Citrus Sinensis ID: 011565
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 483 | 2.2.26 [Sep-21-2011] | |||||||
| P93051 | 463 | Sugar transporter ERD6-li | yes | no | 0.952 | 0.993 | 0.665 | 0.0 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.964 | 0.966 | 0.582 | 1e-157 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.960 | 0.987 | 0.579 | 1e-157 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.952 | 0.978 | 0.535 | 1e-140 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.900 | 0.877 | 0.480 | 1e-120 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.935 | 0.961 | 0.465 | 1e-119 | |
| Q94CI7 | 474 | Sugar transporter ERD6-li | no | no | 0.946 | 0.964 | 0.455 | 1e-115 | |
| Q94AF9 | 467 | Sugar transporter ERD6-li | no | no | 0.948 | 0.980 | 0.439 | 1e-115 | |
| Q93Z80 | 458 | Sugar transporter ERD6-li | no | no | 0.942 | 0.993 | 0.439 | 1e-113 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.898 | 0.907 | 0.451 | 1e-111 |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/473 (66%), Positives = 382/473 (80%), Gaps = 13/473 (2%)
Query: 11 NAADDKMTEPLLRGEQNLADENGGSGKKTGSK-DSLYMVYLSTLVAVSGSYSFGTGVGYS 69
+ A D + EPL+ ++N+A GSK D +MVYLST VAV GS++FG+ GYS
Sbjct: 2 SKASDAVREPLV--DKNMA----------GSKPDQPWMVYLSTFVAVCGSFAFGSCAGYS 49
Query: 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGW 129
SP Q AIR DLSL++AE+S+FGS+LTFGAMIGAITSGPIAD +GRKGAMRVSS C+ GW
Sbjct: 50 SPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGW 109
Query: 130 LAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGAST 189
LAI F++G ++LDLGRLATGYGMG FSYVVP+F AEIAPK RGALT+ NQ+LI G S
Sbjct: 110 LAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSV 169
Query: 190 FFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDAD 249
FIIGT+ TWR LAL+G+IPCA LGLF IPESPRWLAK+G+ EFEAAL+KLRGK AD
Sbjct: 170 SFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKAD 229
Query: 250 ISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANI 309
IS+EA EIQ+YIETLERLPKA++LDLFQ+RY+ SV I GLMV QQFGGIN I FY ++I
Sbjct: 230 ISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTSSI 289
Query: 310 FQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLK 369
F+ AG G I YA+LQVV+T N ++DRAGRKPLLL +ATGL++GCL+ A +F+LK
Sbjct: 290 FEQAGFPTRLGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLK 349
Query: 370 TYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGA 429
+ +A E+VP L + G++VYIGSFS+GMGA PWV+MSEIFPINIKGV G + TLVNWFGA
Sbjct: 350 VHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGA 409
Query: 430 WAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
WA+SYTFNFL +WSSYGTFL+YAA+N L IVF+ +VPETKG+TLE+IQA +N
Sbjct: 410 WAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAIVPETKGKTLEQIQAIVN 462
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/477 (58%), Positives = 351/477 (73%), Gaps = 11/477 (2%)
Query: 7 NVVNNAADDKMTEPLLRGEQNLADENGGSGKKTGSKDSLYMVYLSTLVAVSGSYSFGTGV 66
+VN D + +P L E DE K++ + +S MV ST VAV GS+ FG+ V
Sbjct: 13 EIVNKVED--LGKPFLTHED---DE-----KESENNESYLMVLFSTFVAVCGSFEFGSCV 62
Query: 67 GYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126
GYS+PTQ++IR+DL+LSLAE+S+FGSILT GAM+GA+ SG I+DF GRKGAMR S+ CI
Sbjct: 63 GYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTSACFCI 122
Query: 127 AGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIG 186
GWLA++F++GAL LD+GR TGYG+G+FSYVVPV+ AEI+PK LRG LT+ NQL+IVIG
Sbjct: 123 TGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIG 182
Query: 187 ASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGK 246
+S F+IG++ +W+TLAL G+ PC VLL GL IPESPRWLAK G +EF ALQKLRGK
Sbjct: 183 SSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFRVALQKLRGK 242
Query: 247 DADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYA 306
DADI+ EA IQ I+ LE LPKAR+ DL K+Y SV IGV LMV QQF GIN I FYA
Sbjct: 243 DADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFVGINGIGFYA 302
Query: 307 ANIFQTAGL-SPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAA 365
+ F AG S GTI+ A +QV +T I+ID++GR+PL++ +A G+ LGC+L +
Sbjct: 303 SETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIFLGCILTGTS 362
Query: 366 FFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVN 425
F LK L LE VP+L + GVL+Y+ +FS GMG PWV+MSEIFPIN+KG+ GSL LVN
Sbjct: 363 FLLKGQSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEIFPINVKGIAGSLVVLVN 422
Query: 426 WFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
W GAWA+SYTFNFL +WSS GTF LY+A I+F+ +VPETKG+TLEEIQA +
Sbjct: 423 WSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAKMVPETKGKTLEEIQACIR 479
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 555 bits (1429), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/469 (57%), Positives = 347/469 (73%), Gaps = 5/469 (1%)
Query: 14 DDKMTEPLLRGEQNLADENGGSGKKTGSKDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQ 73
D M + + E L ENG S+++ +MVYLST++AV GSY FGT VGYS+PTQ
Sbjct: 5 KDDMEKRNDKSEPLLLPENGSDV----SEEASWMVYLSTIIAVCGSYEFGTCVGYSAPTQ 60
Query: 74 NAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY 133
I E+L+LS +++SVFGSIL GA++GAITSG I+DFIGRKGAMR+SS + GWL IY
Sbjct: 61 FGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSVISAIGWLIIY 120
Query: 134 FSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFII 193
++G + LD GR TGYG G S+VVPVF AEI+P++LRGAL + NQL IVIG ++ F+I
Sbjct: 121 LAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASMFLI 180
Query: 194 GTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQE 253
G V WRTLAL GV PC VL G + IPESPRWL +G+H +FE ALQKLRG A+I++E
Sbjct: 181 GAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKLRGPQANITRE 240
Query: 254 ATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTA 313
A EIQEY+ +L LPKA L+DL K+ + V +GVGLM QQF GIN + FYA IF +A
Sbjct: 241 AGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSA 300
Query: 314 GLSPSTGTISYALLQVVVTFFN-IIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYG 372
G SP+ G+I Y++ QVV+T ++IDR GR+PLL+ +A G+L+GCLL+ +F LK +G
Sbjct: 301 GASPTLGSILYSIEQVVLTALGATLLIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKAHG 360
Query: 373 LALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAI 432
LAL+ +PAL ++GVLVYIGSFS GMGA PWV+MSEIFPIN+KG G L T+VNW +W +
Sbjct: 361 LALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLV 420
Query: 433 SYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATM 481
S+TFNFL WS +GTF +Y V +L I+FI +VPETKGRTLEEIQA M
Sbjct: 421 SFTFNFLMIWSPHGTFYVYGGVCVLAIIFIAKLVPETKGRTLEEIQAMM 469
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 497 bits (1280), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/465 (53%), Positives = 333/465 (71%), Gaps = 5/465 (1%)
Query: 22 LRGE---QNLADENGGSGKKT--GSKDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAI 76
+RGE NLA E K+ S + L+T VAVSGS+ FG+ +GYSSP Q+ +
Sbjct: 1 MRGEIDEANLAPETSLINKENQDSSATITTTLLLTTFVAVSGSFVFGSAIGYSSPVQSDL 60
Query: 77 REDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE 136
++L+LS+AEYS+FGSILT GAMIGA SG IAD IGR+ M S CI GWLAIY S+
Sbjct: 61 TKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSK 120
Query: 137 GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV 196
A+ LD+GR GYGMG+FS+VVPV+ AEI PK LRG T+ +QLLI +G S +++G+
Sbjct: 121 VAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSF 180
Query: 197 ATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATE 256
WR LAL+G+IPC V ++GLF+IPESPRWLAK+GK EEFE ALQ+LRG+ ADIS E+ E
Sbjct: 181 IGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNE 240
Query: 257 IQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLS 316
I++Y L L + ++DLFQ +Y S+ +GVGLMV+QQFGG+N IAFYA++IF++AG+S
Sbjct: 241 IKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVS 300
Query: 317 PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376
G I+ ++Q+ +T ++++D++GR+PLLL +ATG +GC L+ +F L+
Sbjct: 301 SKIGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISATGTCIGCFLVGLSFSLQFVKQLSG 360
Query: 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTF 436
L L GVLVY GSFS GMG PWV+MSEIFPI+IKG GSL T+V+W G+W IS+TF
Sbjct: 361 DASYLALTGVLVYTGSFSLGMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTF 420
Query: 437 NFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATM 481
NFL W+ GTF ++A V ++F+ +VPETKGRTLEEIQ ++
Sbjct: 421 NFLMNWNPAGTFYVFATVCGATVIFVAKLVPETKGRTLEEIQYSI 465
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/435 (48%), Positives = 295/435 (67%)
Query: 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGP 107
V+LST VAVSGS+ G GVG+SS Q I +DLSLS+AEYS+FGSILT G +IGA+ SG
Sbjct: 58 VFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGK 117
Query: 108 IADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIA 167
+AD +GRK M F CI GWL + ++ A+ LD GRL G G+GIFSYV+PV+ AEIA
Sbjct: 118 VADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIA 177
Query: 168 PKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWL 227
PK +RG+ ANQL+ G S FFIIG WR L +VG++PC + LF IPESPRWL
Sbjct: 178 PKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWL 237
Query: 228 AKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG 287
AK+G+ +E ++LQ+LRG D DIS+EA I++ I+ E + ++ +LFQ+RY + + IG
Sbjct: 238 AKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIG 297
Query: 288 VGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPL 347
VGLM +QQ G + + +YA+++F G + GT A + V +++D+ GR+ L
Sbjct: 298 VGLMFLQQLCGSSGVTYYASSLFNKGGFPSAIGTSVIATIMVPKAMLATVLVDKMGRRTL 357
Query: 348 LLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSE 407
L+ + + + L LLL+ ++ +++G+ E P T GVL +I SF+ GMG PW++M+E
Sbjct: 358 LMASCSAMGLSALLLSVSYGFQSFGILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAE 417
Query: 408 IFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVP 467
IFP+N+K G+L T+ NW W I+YTFNF+ W++ G FL+++ V+ IVFI +VP
Sbjct: 418 IFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVFIYFLVP 477
Query: 468 ETKGRTLEEIQATMN 482
ETKGR+LEEIQA +N
Sbjct: 478 ETKGRSLEEIQALLN 492
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/462 (46%), Positives = 306/462 (66%), Gaps = 10/462 (2%)
Query: 21 LLRGEQNLADENGGSGKKTGSKDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDL 80
LLR QN +E + T +V ST V+V GS+ FG GYSS Q I DL
Sbjct: 15 LLRKNQNDINEC----RITA------VVLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDL 64
Query: 81 SLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALS 140
LS+A+YS+FGSI+TFG MIGAI SG +AD +GRKG M + CI GW+A+ ++ ++
Sbjct: 65 GLSVAQYSMFGSIMTFGGMIGAIFSGKVADLMGRKGTMWFAQIFCIFGWVAVALAKDSMW 124
Query: 141 LDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVATWR 200
LD+GRL+TG+ +G+ SYV+PV+ AEI PK +RGA ANQL+ G S F++IG WR
Sbjct: 125 LDIGRLSTGFAVGLLSYVIPVYIAEITPKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWR 184
Query: 201 TLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEY 260
LAL+G+IPCA+ ++ LF IPESPR L K G +E A+LQ LRG DADIS+EA I+E
Sbjct: 185 NLALIGLIPCALQVVTLFFIPESPRLLGKWGHEKECRASLQSLRGDDADISEEANTIKET 244
Query: 261 IETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTG 320
+ + PK+R++DLFQ+RY SV IGVGLM++QQ G + + +Y ++F G S G
Sbjct: 245 MILFDEGPKSRVMDLFQRRYAPSVVIGVGLMLLQQLSGSSGLMYYVGSVFDKGGFPSSIG 304
Query: 321 TISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPA 380
++ A++ + +I++++ GR+PLLL + G+ LLL+ +F ++YG+ E P
Sbjct: 305 SMILAVIMIPKALLGLILVEKMGRRPLLLASTGGMCFFSLLLSFSFCFRSYGMLDELTPI 364
Query: 381 LTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440
T GV+ +I SF+ GMG PW++MSEIFP+N+K G+L TL NW W +++ +NF+
Sbjct: 365 FTCIGVVGFISSFAVGMGGLPWIIMSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFML 424
Query: 441 TWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
W++ GTFL++ + GIVFI +VPETKGRTLE+IQA++
Sbjct: 425 EWNASGTFLIFFTICGAGIVFIYAMVPETKGRTLEDIQASLT 466
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/461 (45%), Positives = 303/461 (65%), Gaps = 4/461 (0%)
Query: 25 EQNLADENGGSGKKTGSKDS----LYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDL 80
E+ + E G K + DS V LST VAV GS+SFG GY+S + + +DL
Sbjct: 4 EEGRSIEEGLLQLKNKNDDSECRITACVILSTFVAVCGSFSFGVATGYTSGAETGVMKDL 63
Query: 81 SLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALS 140
LS+A++S FGS T GA IGA+ G +A IGR+G M VS F+CI GWL+I F++ +
Sbjct: 64 DLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVL 123
Query: 141 LDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVATWR 200
L+ GR+ +G G G+ SYVVPV+ AEI PK +RG T +NQLL G + + G TWR
Sbjct: 124 LNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWR 183
Query: 201 TLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEY 260
TLAL+G +PC + ++GLF +PESPRWLAK+G +E E +L +LRG+DADIS+EA+EIQ
Sbjct: 184 TLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELENSLFRLRGRDADISREASEIQVM 243
Query: 261 IETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTG 320
+ +E K+ DLFQ++Y +++ +G+GLM+IQQF G A+ YA+ IF+ AG S + G
Sbjct: 244 TKMVENDSKSSFSDLFQRKYRYTLVVGIGLMLIQQFSGSAAVISYASTIFRKAGFSVAIG 303
Query: 321 TISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPA 380
T + + +I++D+ GR+PLL+ +A G+ + C+LL AF L+ L E P
Sbjct: 304 TTMLGIFVIPKAMIGLILVDKWGRRPLLMTSAFGMSMTCMLLGVAFTLQKMQLLSELTPI 363
Query: 381 LTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440
L+ V++YI +++ G+G PWV+MSEIFPINIK GS+ TLV++ + ++Y FNFL
Sbjct: 364 LSFICVMMYIATYAIGLGGLPWVIMSEIFPINIKVTAGSIVTLVSFSSSSIVTYAFNFLF 423
Query: 441 TWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATM 481
WS+ GTF ++A + ++FI +VPETKG +LEEIQ ++
Sbjct: 424 EWSTQGTFFIFAGIGGAALLFIWLLVPETKGLSLEEIQVSL 464
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/460 (43%), Positives = 295/460 (64%), Gaps = 2/460 (0%)
Query: 25 EQNLADENGGSGKKTGSKDSLY--MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSL 82
E+N + E G + D V LST VAV ++S+G GY+S + AI ++L L
Sbjct: 5 EENRSMEEGLLQHQNDRDDRRITACVILSTFVAVCSAFSYGCAAGYTSGAETAIMKELDL 64
Query: 83 SLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLD 142
S+A++S FGS L G +GA+ SG +A +GR+ + F C+ GWL+I F++ LD
Sbjct: 65 SMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRTLWACDFFCVFGWLSIAFAKNVFWLD 124
Query: 143 LGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVATWRTL 202
LGR++ G G+G+ SYVVPV+ AEI PK +RGA T++NQLL G S + GTV WR +
Sbjct: 125 LGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVM 184
Query: 203 ALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIE 262
A++G IPC + +G+F IPESPRWLAKI +E E++L +LRGKD D+S EA EIQ +
Sbjct: 185 AVIGAIPCILQTIGIFFIPESPRWLAKIRLSKEVESSLHRLRGKDTDVSGEAAEIQVMTK 244
Query: 263 TLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTI 322
LE K+ D+FQK+Y ++ +G+GLM+IQQ G + I +Y+ IF+ AG S G++
Sbjct: 245 MLEEDSKSSFSDMFQKKYRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFSERLGSM 304
Query: 323 SYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALT 382
+ + + +I++DR GR+PLLL +A G+ +G LL+ +F L+ + E +P
Sbjct: 305 IFGVFVIPKALVGLILVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQQMNVLPELIPIFV 364
Query: 383 LAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETW 442
+LVY G F+ G+G PWV+MSEIFPINIK G++ L +W W +SY FNF+ W
Sbjct: 365 FVNILVYFGCFAFGIGGLPWVIMSEIFPINIKVSAGTIVALTSWTSGWFVSYAFNFMFEW 424
Query: 443 SSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
S+ GTF ++AAV + +FI +VPETKG++LEE+QA++
Sbjct: 425 SAQGTFYIFAAVGGMSFIFIWMLVPETKGQSLEELQASLT 464
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/466 (43%), Positives = 296/466 (63%), Gaps = 11/466 (2%)
Query: 17 MTEPLLRGEQNLADENGGSGKKTGSKDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAI 76
M E LLR E + D + V LST VAV S+S+G GY+S + AI
Sbjct: 1 MEEGLLRHENDRDD-----------RRITACVILSTFVAVCSSFSYGCANGYTSGAETAI 49
Query: 77 REDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE 136
++L LS+A++S FGS L G +GA+ SG +A +GR+ + CI GWL+I F++
Sbjct: 50 MKELDLSMAQFSAFGSFLNLGGAVGALFSGQLAVILGRRRTLWACDLFCIFGWLSIAFAK 109
Query: 137 GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV 196
L LDLGR++ G G+G+ SYVVPV+ AEI PK +RGA +++ LL G S + GTV
Sbjct: 110 NVLWLDLGRISLGIGVGLTSYVVPVYIAEITPKHVRGAFSASTLLLQNSGISLIYFFGTV 169
Query: 197 ATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATE 256
WR LA++G +PC + ++G++ IPESPRWLAKIG +E E +L +LRGKDAD+S EA E
Sbjct: 170 INWRVLAVIGALPCFIPVIGIYFIPESPRWLAKIGSVKEVENSLHRLRGKDADVSDEAAE 229
Query: 257 IQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLS 316
IQ + LE K+ D+FQK+Y ++ +G+GLM+IQQ G + I +Y+ IF+ AG S
Sbjct: 230 IQVMTKMLEEDSKSSFCDMFQKKYRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFS 289
Query: 317 PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376
G++ + + + +I++DR GR+PLLL +A G+ +G LL+ +F L+ L E
Sbjct: 290 ERLGSMIFGVFVIPKALVGLILVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQEMNLFPE 349
Query: 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTF 436
+P +LVY G F+ G+G PW++MSEIFPINIK GS+ L +W W +SY F
Sbjct: 350 FIPVFVFINILVYFGFFAIGIGGLPWIIMSEIFPINIKVSAGSIVALTSWTTGWFVSYGF 409
Query: 437 NFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
NF+ WS+ GTF ++A V L ++FI +VPETKG++LEE+QA++
Sbjct: 410 NFMFEWSAQGTFYIFAMVGGLSLLFIWMLVPETKGQSLEELQASLT 455
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/434 (45%), Positives = 292/434 (67%)
Query: 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGP 107
V LST +AV GS+SFG +GY+S + I +DL LS+A++S F S+ T GA IGA+ SG
Sbjct: 35 VILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGK 94
Query: 108 IADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIA 167
+A +GR+ M VS +CI GW +I F++ + L+ GR+++G G+G+ SYVVPV+ AEI+
Sbjct: 95 MAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEIS 154
Query: 168 PKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWL 227
PK +RG T NQLL G + + G WR LAL+G +PC + ++GLF +PESPRWL
Sbjct: 155 PKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESPRWL 214
Query: 228 AKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG 287
AK+G +E E +L +LRG +ADIS+EA++I+ + +E K+ DLFQ++Y +++ +G
Sbjct: 215 AKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVG 274
Query: 288 VGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPL 347
+GLM+IQQF G +A+ YA+ I + AG S + G+ L + +I++D+ GR+PL
Sbjct: 275 IGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTLLGLFMIPKAMIGVILVDKWGRRPL 334
Query: 348 LLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSE 407
LL + +G+ + +L+ AF L+ L E P T V +YIG+++ G+G PWV+MSE
Sbjct: 335 LLTSVSGMCITSMLIGVAFTLQKMQLLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSE 394
Query: 408 IFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVP 467
IFP+NIK GS+ TLV+W + ++Y FNFL WS+ GTF ++ AV L ++FI +VP
Sbjct: 395 IFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFGAVGGLALLFIWLLVP 454
Query: 468 ETKGRTLEEIQATM 481
ETKG +LEEIQA++
Sbjct: 455 ETKGLSLEEIQASL 468
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 483 | ||||||
| 224068735 | 484 | predicted protein [Populus trichocarpa] | 0.985 | 0.983 | 0.725 | 0.0 | |
| 255567600 | 481 | sugar transporter, putative [Ricinus com | 0.968 | 0.972 | 0.701 | 0.0 | |
| 359479783 | 490 | PREDICTED: sugar transporter ERD6-like 7 | 0.991 | 0.977 | 0.694 | 0.0 | |
| 297824915 | 464 | hypothetical protein ARALYDRAFT_483991 [ | 0.956 | 0.995 | 0.665 | 0.0 | |
| 296086671 | 437 | unnamed protein product [Vitis vinifera] | 0.902 | 0.997 | 0.738 | 0.0 | |
| 350539447 | 480 | st3 protein [Solanum lycopersicum] gi|23 | 0.985 | 0.991 | 0.656 | 0.0 | |
| 18407508 | 463 | sugar transporter ERD6-like 7 [Arabidops | 0.952 | 0.993 | 0.665 | 0.0 | |
| 21536914 | 463 | putative sugar transporter [Arabidopsis | 0.952 | 0.993 | 0.663 | 0.0 | |
| 356504884 | 471 | PREDICTED: sugar transporter ERD6-like 7 | 0.973 | 0.997 | 0.653 | 0.0 | |
| 224128648 | 436 | predicted protein [Populus trichocarpa] | 0.902 | 1.0 | 0.699 | 1e-180 |
| >gi|224068735|ref|XP_002302812.1| predicted protein [Populus trichocarpa] gi|222844538|gb|EEE82085.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/477 (72%), Positives = 408/477 (85%), Gaps = 1/477 (0%)
Query: 6 QNVVNNAADDKMTEPLLRGEQNLADENGGSGKKTGSKDSLYMVYLSTLVAVSGSYSFGTG 65
+ N A +++ EPL+ ++N + E GS ++ SK+S +MVYLST VAV GS++FG+
Sbjct: 8 EQCKNRAEHEEVREPLMD-KKNQSGEQDGSFAQSSSKESAWMVYLSTFVAVCGSFAFGSC 66
Query: 66 VGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVC 125
GYSSPT+NA+REDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGA+RV++ C
Sbjct: 67 AGYSSPTENAVREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGALRVATSFC 126
Query: 126 IAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVI 185
IAGWLAIYF++G L+LDLGRLATGYGMG+FSYVVPVF AEIAPK LRGALT+ NQL+I
Sbjct: 127 IAGWLAIYFAQGVLALDLGRLATGYGMGVFSYVVPVFIAEIAPKNLRGALTATNQLMICG 186
Query: 186 GASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRG 245
G S FIIGTV TWR LAL G++PCA+L+ GLFLIPESPRWLAK G+ EEF+ ALQKLRG
Sbjct: 187 GVSVAFIIGTVLTWRALALTGLVPCAILVFGLFLIPESPRWLAKRGREEEFQTALQKLRG 246
Query: 246 KDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFY 305
K+ADI QEATEI+EYIETLERLPKAR LDLFQ+RYL SV IGVGLMV QQFGGIN + FY
Sbjct: 247 KEADIYQEATEIKEYIETLERLPKARFLDLFQRRYLRSVIIGVGLMVFQQFGGINGVCFY 306
Query: 306 AANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAA 365
+NIF++AG SPS GTI YA+LQVVVT N I+ID+AGRKPLLL +A+GL+LGCL+ A +
Sbjct: 307 VSNIFESAGFSPSLGTIIYAILQVVVTALNTIVIDKAGRKPLLLVSASGLILGCLITAIS 366
Query: 366 FFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVN 425
F+LK LA++SVPALTL G+L+YIGSFS+GMGA PWV+MSEIFPINIKGV GSL TLVN
Sbjct: 367 FYLKVNELAVKSVPALTLTGILLYIGSFSAGMGAVPWVIMSEIFPINIKGVAGSLATLVN 426
Query: 426 WFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
WFGAWAISYT+N+L +WSSYGTF+LYAA+N L IVF+ VVPETKGRTLE+IQA +N
Sbjct: 427 WFGAWAISYTYNYLMSWSSYGTFILYAAINALAIVFVVMVVPETKGRTLEQIQAAIN 483
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567600|ref|XP_002524779.1| sugar transporter, putative [Ricinus communis] gi|223535963|gb|EEF37622.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/473 (70%), Positives = 401/473 (84%), Gaps = 5/473 (1%)
Query: 10 NNAADDKMTEPLLRGEQNLADENGGSGKKTGSKDSLYMVYLSTLVAVSGSYSFGTGVGYS 69
+N +++ EPL+ +NLADE GS ++ S +MVYLST V+V GS+ FG GYS
Sbjct: 13 DNDVQEEVREPLM--GKNLADEENGSREQNISN---WMVYLSTFVSVCGSFEFGCCAGYS 67
Query: 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGW 129
SPTQ+AI EDLSLSLAEYSVFGSILTFGAMIGAITSG IADFIGRKGAMRV++ +C+AGW
Sbjct: 68 SPTQDAITEDLSLSLAEYSVFGSILTFGAMIGAITSGLIADFIGRKGAMRVAAALCVAGW 127
Query: 130 LAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGAST 189
L IYF++GAL+LD+GRLATGYGMG+FSYVVPVF AEIAPK LRGALT+ NQL+I G S
Sbjct: 128 LFIYFAKGALALDIGRLATGYGMGVFSYVVPVFVAEIAPKNLRGALTTLNQLMICSGVSV 187
Query: 190 FFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDAD 249
F+IIGTV TWRTLAL G++PCA+L+ GLFLIPESPRWLAK+G+ ++FE AL+ LRGKD D
Sbjct: 188 FYIIGTVITWRTLALCGLVPCAILIFGLFLIPESPRWLAKMGREKQFETALKTLRGKDTD 247
Query: 250 ISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANI 309
IS EA EI++YIETLERLPKA+LLDLFQ+RYL SVTIGVGLMV QQFGGIN + FY +NI
Sbjct: 248 ISHEADEIKDYIETLERLPKAKLLDLFQRRYLRSVTIGVGLMVFQQFGGINGVCFYTSNI 307
Query: 310 FQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLK 369
F++AG S + GTI+YA++QVVVT N +ID+AGRKPLLL +ATGL++ CL+ +F+LK
Sbjct: 308 FESAGFSATIGTITYAIIQVVVTALNTTVIDKAGRKPLLLVSATGLVIACLITGTSFYLK 367
Query: 370 TYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGA 429
T LAL++VPAL + G+L+YIGSFS+GMGA PWV+MSEIFPINIKGV GSL TL+NWFGA
Sbjct: 368 TNDLALKAVPALAVTGILLYIGSFSAGMGAVPWVVMSEIFPINIKGVAGSLATLMNWFGA 427
Query: 430 WAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
W ISYT+NFL +WSSYGTF++YAA+N LGIVF+ VVPETKGRTLE+IQA +N
Sbjct: 428 WTISYTYNFLMSWSSYGTFIIYAAINALGIVFVAKVVPETKGRTLEQIQAAIN 480
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479783|ref|XP_002270927.2| PREDICTED: sugar transporter ERD6-like 7-like [Vitis vinifera] gi|310877884|gb|ADP37173.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/484 (69%), Positives = 401/484 (82%), Gaps = 5/484 (1%)
Query: 3 NKDQNVVNNAADDKMTEPLLRGEQNLADENGGSGKK----TGSKDSLYMVYLSTLVAVSG 58
+D ++ +++ +PL++G++NL D GGSG + SK+ L+MVYLST VAV G
Sbjct: 7 KQDVEKGEDSTQEEIRKPLMQGQKNLPDA-GGSGSEDQTDQSSKEHLWMVYLSTFVAVCG 65
Query: 59 SYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAM 118
S+ FG+ GYSSPTQ AIREDL LSL EYSVFGSILTFGAMIGAITSGPIADFIGRKGAM
Sbjct: 66 SFEFGSCAGYSSPTQTAIREDLDLSLGEYSVFGSILTFGAMIGAITSGPIADFIGRKGAM 125
Query: 119 RVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSA 178
RVSS C AGWLAIYF+EGAL+LD+GRLATGYGMG+FSYVVPVF AEIAPK LRGALT+
Sbjct: 126 RVSSAFCAAGWLAIYFAEGALALDIGRLATGYGMGVFSYVVPVFIAEIAPKNLRGALTTL 185
Query: 179 NQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEA 238
NQL+I G S FIIGTV TWR LAL G++PCAV+L GLFLIPESPRWLAK G+ +EFEA
Sbjct: 186 NQLMICTGVSVAFIIGTVLTWRVLALTGLVPCAVVLFGLFLIPESPRWLAKTGREKEFEA 245
Query: 239 ALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGG 298
ALQ+LRGKDADIS EA EIQ+YIETL++LPKA+++DLFQ+RYL SV IGVGLM QQFGG
Sbjct: 246 ALQRLRGKDADISLEAAEIQDYIETLQQLPKAKIMDLFQRRYLPSVIIGVGLMFFQQFGG 305
Query: 299 INAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLG 358
IN I FY +NIF++AG S S GTI+YA+LQV+VT +IDRAGRKPLLL +A+GL+L
Sbjct: 306 INGICFYVSNIFESAGFSSSVGTITYAILQVIVTAMGAALIDRAGRKPLLLVSASGLVLS 365
Query: 359 CLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGG 418
C+L +F+ K++ LAL++ PAL + G+L+YIGSFS GMGA PWV+MSEIFPINIKGV G
Sbjct: 366 CVLAGLSFYFKSHELALKAAPALAVTGILLYIGSFSVGMGAVPWVVMSEIFPINIKGVAG 425
Query: 419 SLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQ 478
SL TL+NWFGAWAISYTFN+L +WSSYGTF++Y +N L IVF+ VVPETKGRTLE+IQ
Sbjct: 426 SLATLMNWFGAWAISYTFNYLMSWSSYGTFIIYGVINALAIVFVVKVVPETKGRTLEQIQ 485
Query: 479 ATMN 482
AT+N
Sbjct: 486 ATIN 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824915|ref|XP_002880340.1| hypothetical protein ARALYDRAFT_483991 [Arabidopsis lyrata subsp. lyrata] gi|297326179|gb|EFH56599.1| hypothetical protein ARALYDRAFT_483991 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/475 (66%), Positives = 383/475 (80%), Gaps = 13/475 (2%)
Query: 9 VNNAADDKMTEPLLRGEQNLADENGGSGKKTGSK-DSLYMVYLSTLVAVSGSYSFGTGVG 67
++ A D + EPL+ ++N+A GSK D +MVYLST VAV GS++FG+ G
Sbjct: 1 MSKAKSDAVREPLV--DKNMA----------GSKPDQPWMVYLSTFVAVCGSFAFGSCAG 48
Query: 68 YSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127
YSSP Q AIR DLSL++AE+S+FGS+LTFGAMIGAITSGPIAD +GRKGAMRVSS C+
Sbjct: 49 YSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVV 108
Query: 128 GWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGA 187
GWLAI+F++G + LDLGRLATGYGMG FSYVVP+F AEIAPK RGALT+ NQ+LI G
Sbjct: 109 GWLAIFFAKGVVPLDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGV 168
Query: 188 STFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKD 247
S FIIGT+ TWR LAL+G+IPCA LGLF IPESPRWLAK+G+ EFEAAL+KLRGK
Sbjct: 169 SVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKMGRDTEFEAALRKLRGKK 228
Query: 248 ADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAA 307
ADISQEA EIQ+YIETLERLPKA++LDLFQ+RY+ SV I GLMV QQFGGIN I FY +
Sbjct: 229 ADISQEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTS 288
Query: 308 NIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFF 367
+IF+ AG G I YA+LQVV+T N ++DRAGRKPLLL +ATGL++GCL+ A +F+
Sbjct: 289 SIFEQAGFPTRLGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFY 348
Query: 368 LKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWF 427
LK + +A E+VP L + G++VYIGSFS+GMGA PWV+MSEIFPINIKGV G + TLVNWF
Sbjct: 349 LKVHDMAPEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWF 408
Query: 428 GAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
GAWA+SYTFNFL +WSSYGTFL+YAA+N L IVF+ +VPETKG+TLE+IQA +N
Sbjct: 409 GAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAIVPETKGKTLEQIQAVVN 463
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086671|emb|CBI32306.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/436 (73%), Positives = 373/436 (85%)
Query: 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSG 106
MVYLST VAV GS+ FG+ GYSSPTQ AIREDL LSL EYSVFGSILTFGAMIGAITSG
Sbjct: 1 MVYLSTFVAVCGSFEFGSCAGYSSPTQTAIREDLDLSLGEYSVFGSILTFGAMIGAITSG 60
Query: 107 PIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEI 166
PIADFIGRKGAMRVSS C AGWLAIYF+EGAL+LD+GRLATGYGMG+FSYVVPVF AEI
Sbjct: 61 PIADFIGRKGAMRVSSAFCAAGWLAIYFAEGALALDIGRLATGYGMGVFSYVVPVFIAEI 120
Query: 167 APKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRW 226
APK LRGALT+ NQL+I G S FIIGTV TWR LAL G++PCAV+L GLFLIPESPRW
Sbjct: 121 APKNLRGALTTLNQLMICTGVSVAFIIGTVLTWRVLALTGLVPCAVVLFGLFLIPESPRW 180
Query: 227 LAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTI 286
LAK G+ +EFEAALQ+LRGKDADIS EA EIQ+YIETL++LPKA+++DLFQ+RYL SV I
Sbjct: 181 LAKTGREKEFEAALQRLRGKDADISLEAAEIQDYIETLQQLPKAKIMDLFQRRYLPSVII 240
Query: 287 GVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKP 346
GVGLM QQFGGIN I FY +NIF++AG S S GTI+YA+LQV+VT +IDRAGRKP
Sbjct: 241 GVGLMFFQQFGGINGICFYVSNIFESAGFSSSVGTITYAILQVIVTAMGAALIDRAGRKP 300
Query: 347 LLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMS 406
LLL +A+GL+L C+L +F+ K++ LAL++ PAL + G+L+YIGSFS GMGA PWV+MS
Sbjct: 301 LLLVSASGLVLSCVLAGLSFYFKSHELALKAAPALAVTGILLYIGSFSVGMGAVPWVVMS 360
Query: 407 EIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVV 466
EIFPINIKGV GSL TL+NWFGAWAISYTFN+L +WSSYGTF++Y +N L IVF+ VV
Sbjct: 361 EIFPINIKGVAGSLATLMNWFGAWAISYTFNYLMSWSSYGTFIIYGVINALAIVFVVKVV 420
Query: 467 PETKGRTLEEIQATMN 482
PETKGRTLE+IQAT+N
Sbjct: 421 PETKGRTLEQIQATIN 436
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350539447|ref|NP_001233882.1| st3 protein [Solanum lycopersicum] gi|23504385|emb|CAC00697.2| putative sugar transporter [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/481 (65%), Positives = 390/481 (81%), Gaps = 5/481 (1%)
Query: 3 NKDQNVVNNAADDKMTEPLL-RGEQNLADENGGSGKKTGSKDSLYMVYLSTLVAVSGSYS 61
+D N ++++T PL+ + + + +ENG KK +D MVYLSTLVAV GSYS
Sbjct: 2 KEDIEHSENRVNEEITTPLIIQTNKRVKEENGCYEKK---QDRC-MVYLSTLVAVRGSYS 57
Query: 62 FGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVS 121
G+ GYSSPTQ+AIREDL+LS+A+ S+FGSI TFGAMIGAITSGPIAD+IGRKGAMR+S
Sbjct: 58 LGSCAGYSSPTQSAIREDLNLSIAQISLFGSIWTFGAMIGAITSGPIADYIGRKGAMRMS 117
Query: 122 SFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQL 181
S C+AGWLAI+F++GAL+LD+GRLATGYGMG+FSYVVPVF AEIAPK+LRGALT+ NQL
Sbjct: 118 SGFCVAGWLAIFFAQGALALDIGRLATGYGMGVFSYVVPVFIAEIAPKDLRGALTTINQL 177
Query: 182 LIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQ 241
+I G S FIIGT+ TWRTLAL G+IPCA+LL GLF+IPESPRWLAKIG +EFE AL+
Sbjct: 178 MICCGVSVSFIIGTMMTWRTLALTGLIPCAILLFGLFIIPESPRWLAKIGHQKEFELALR 237
Query: 242 KLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINA 301
KLRGKDADIS+EA EI++YIETLE+LPK L DLFQ+RY S+ +GVGLMV QQFGGIN
Sbjct: 238 KLRGKDADISEEAAEIKDYIETLEKLPKVNLFDLFQRRYSSSLIVGVGLMVFQQFGGING 297
Query: 302 IAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLL 361
I FY +IF+++G S GTI YA++QV +T +IDR GRKPLLL + TGL++GC+L
Sbjct: 298 ICFYTGSIFESSGFSSDIGTIIYAIIQVPITALGAALIDRTGRKPLLLVSGTGLVIGCIL 357
Query: 362 LAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLT 421
+F++K + +A+++ P L + G+LVYIGSFS GMGA PWV+MSEI+PINIKG GSL
Sbjct: 358 TGISFYMKGHEMAIKAAPILAVTGILVYIGSFSVGMGAVPWVVMSEIYPINIKGAAGSLA 417
Query: 422 TLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATM 481
TLVNWFGAWA SYTFNFL TW+S+GTF+LYAAVN L I+F+ +VPETKGRTLE+IQA +
Sbjct: 418 TLVNWFGAWACSYTFNFLMTWNSFGTFVLYAAVNALSILFVIKIVPETKGRTLEQIQAAI 477
Query: 482 N 482
N
Sbjct: 478 N 478
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18407508|ref|NP_566120.1| sugar transporter ERD6-like 7 [Arabidopsis thaliana] gi|30690868|ref|NP_850483.1| sugar transporter ERD6-like 7 [Arabidopsis thaliana] gi|117940159|sp|P93051.2|ERDL7_ARATH RecName: Full=Sugar transporter ERD6-like 7 gi|20197560|gb|AAD13706.2| putative sugar transporter [Arabidopsis thaliana] gi|21539441|gb|AAM53273.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|23197690|gb|AAN15372.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|330255830|gb|AEC10924.1| sugar transporter ERD6-like 7 [Arabidopsis thaliana] gi|330255831|gb|AEC10925.1| sugar transporter ERD6-like 7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/473 (66%), Positives = 382/473 (80%), Gaps = 13/473 (2%)
Query: 11 NAADDKMTEPLLRGEQNLADENGGSGKKTGSK-DSLYMVYLSTLVAVSGSYSFGTGVGYS 69
+ A D + EPL+ ++N+A GSK D +MVYLST VAV GS++FG+ GYS
Sbjct: 2 SKASDAVREPLV--DKNMA----------GSKPDQPWMVYLSTFVAVCGSFAFGSCAGYS 49
Query: 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGW 129
SP Q AIR DLSL++AE+S+FGS+LTFGAMIGAITSGPIAD +GRKGAMRVSS C+ GW
Sbjct: 50 SPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGW 109
Query: 130 LAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGAST 189
LAI F++G ++LDLGRLATGYGMG FSYVVP+F AEIAPK RGALT+ NQ+LI G S
Sbjct: 110 LAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSV 169
Query: 190 FFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDAD 249
FIIGT+ TWR LAL+G+IPCA LGLF IPESPRWLAK+G+ EFEAAL+KLRGK AD
Sbjct: 170 SFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKAD 229
Query: 250 ISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANI 309
IS+EA EIQ+YIETLERLPKA++LDLFQ+RY+ SV I GLMV QQFGGIN I FY ++I
Sbjct: 230 ISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTSSI 289
Query: 310 FQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLK 369
F+ AG G I YA+LQVV+T N ++DRAGRKPLLL +ATGL++GCL+ A +F+LK
Sbjct: 290 FEQAGFPTRLGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLK 349
Query: 370 TYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGA 429
+ +A E+VP L + G++VYIGSFS+GMGA PWV+MSEIFPINIKGV G + TLVNWFGA
Sbjct: 350 VHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGA 409
Query: 430 WAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
WA+SYTFNFL +WSSYGTFL+YAA+N L IVF+ +VPETKG+TLE+IQA +N
Sbjct: 410 WAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAIVPETKGKTLEQIQAIVN 462
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21536914|gb|AAM61246.1| putative sugar transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/473 (66%), Positives = 381/473 (80%), Gaps = 13/473 (2%)
Query: 11 NAADDKMTEPLLRGEQNLADENGGSGKKTGSK-DSLYMVYLSTLVAVSGSYSFGTGVGYS 69
+ A D + EPL+ ++N+A GSK D +MVYLST VAV G ++FG+ GYS
Sbjct: 2 SKASDAVREPLV--DKNMA----------GSKPDQPWMVYLSTFVAVCGPFAFGSCAGYS 49
Query: 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGW 129
SP Q AIR DLSL++AE+S+FGS+LTFGAMIGAITSGPIAD +GRKGAMRVSS C+ GW
Sbjct: 50 SPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGW 109
Query: 130 LAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGAST 189
LAI F++G ++LDLGRLATGYGMG FSYVVP+F AEIAPK RGALT+ NQ+LI G S
Sbjct: 110 LAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSV 169
Query: 190 FFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDAD 249
FIIGT+ TWR LAL+G+IPCA LGLF IPESPRWLAK+G+ EFEAAL+KLRGK AD
Sbjct: 170 SFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKAD 229
Query: 250 ISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANI 309
IS+EA EIQ+YIETLERLPKA++LDLFQ+RY+ SV I GLMV QQFGGIN I FY ++I
Sbjct: 230 ISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTSSI 289
Query: 310 FQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLK 369
F+ AG G I YA+LQVV+T N ++DRAGRKPLLL +ATGL++GCL+ A +F+LK
Sbjct: 290 FEQAGFPTRLGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLK 349
Query: 370 TYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGA 429
+ +A E+VP L + G++VYIGSFS+GMGA PWV+MSEIFPINIKGV G + TLVNWFGA
Sbjct: 350 VHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGA 409
Query: 430 WAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482
WA+SYTFNFL +WSSYGTFL+YAA+N L IVF+ +VPETKG+TLE+IQA +N
Sbjct: 410 WAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAIVPETKGKTLEQIQAVVN 462
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504884|ref|XP_003521224.1| PREDICTED: sugar transporter ERD6-like 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/482 (65%), Positives = 381/482 (79%), Gaps = 12/482 (2%)
Query: 1 MANKDQNVVNNAADDKMTEPLLRGEQNLADENGGSGKKTGSKDSLYMVYLSTLVAVSGSY 60
MA K+ V + + EPL+ GEQN +K +MVY ST +AV GSY
Sbjct: 1 MAIKED--VEDRTQKGIREPLVVGEQN----------HHANKGHPWMVYFSTFIAVCGSY 48
Query: 61 SFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRV 120
FG GYSSPTQ+AIR+DLSLSLAEYS+FGSILTFGAM+GAITSGP+ADFIGRKGAMRV
Sbjct: 49 EFGACAGYSSPTQDAIRKDLSLSLAEYSLFGSILTFGAMVGAITSGPLADFIGRKGAMRV 108
Query: 121 SSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQ 180
SS C+AGWL IYFSEG + LD+GRLATGYGMG+FSYVVPVF AEIAPKELRGALT+ NQ
Sbjct: 109 SSAFCVAGWLVIYFSEGPVPLDIGRLATGYGMGVFSYVVPVFVAEIAPKELRGALTTLNQ 168
Query: 181 LLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAAL 240
+IV S FIIG V +WR LA++G++P AVLLLGLF IPESPRWLAK G ++F AAL
Sbjct: 169 FMIVTAVSVSFIIGNVLSWRALAIIGLVPTAVLLLGLFFIPESPRWLAKRGHKKDFVAAL 228
Query: 241 QKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGIN 300
Q LRGKDADIS+EA EIQ+YI +LE+LPK+ LL+LF +RYL SVTIG+GLMV QQFGGIN
Sbjct: 229 QILRGKDADISEEAEEIQDYITSLEQLPKSSLLELFHRRYLRSVTIGIGLMVCQQFGGIN 288
Query: 301 AIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCL 360
I FYA++IF+ AG SP+ GTI+YA LQ+V+T ID+AGRKPLLL + +GL+ GC+
Sbjct: 289 GICFYASSIFEQAGFSPTIGTITYACLQIVITGLGAAFIDKAGRKPLLLLSGSGLVAGCI 348
Query: 361 LLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSL 420
A AF+LK + + +E+VPAL + G+LVYIGSFS GMGA PWV+MSEIFP+N+KG+ GS+
Sbjct: 349 FAAVAFYLKVHEVGVEAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNVKGLAGSV 408
Query: 421 TTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQAT 480
TL NWFGAW SYTFNFL +WSSYGTF+LYAA+N L I+FI VPETKG++LE++QA
Sbjct: 409 ATLTNWFGAWLCSYTFNFLMSWSSYGTFILYAAINALAILFIIVAVPETKGKSLEQLQAD 468
Query: 481 MN 482
+N
Sbjct: 469 IN 470
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128648|ref|XP_002320384.1| predicted protein [Populus trichocarpa] gi|222861157|gb|EEE98699.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 305/436 (69%), Positives = 363/436 (83%)
Query: 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSG 106
MVYLST VAV+GS+ G+ GYSSPTQNAIREDLSLS+AEYS+FGSILT GAMIGAITSG
Sbjct: 1 MVYLSTFVAVAGSFEVGSCSGYSSPTQNAIREDLSLSIAEYSLFGSILTVGAMIGAITSG 60
Query: 107 PIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEI 166
PIAD+IGRKGAMR SS C AGWLAIYF++GAL+LD+GRLATGYGMG S+VVPVF AEI
Sbjct: 61 PIADYIGRKGAMRFSSTSCAAGWLAIYFAKGALALDIGRLATGYGMGALSFVVPVFIAEI 120
Query: 167 APKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRW 226
APK LRG LT+ QL++ G S FIIGTV WR LAL G+IPC +L +GLFLIPESPRW
Sbjct: 121 APKNLRGTLTAVTQLMVATGVSVAFIIGTVLRWRVLALTGLIPCVILHVGLFLIPESPRW 180
Query: 227 LAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTI 286
LAK G+ +EFE LQKLRG+ ADIS EA EI++YIETLERLPKA+LLDLFQ+R LHSV I
Sbjct: 181 LAKRGREKEFETTLQKLRGRAADISYEAIEIKDYIETLERLPKAKLLDLFQRRNLHSVLI 240
Query: 287 GVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKP 346
GVGLMV+QQFGGINA+ FY ++IF+ AG SPS GTI YA+LQVVV N +ID+ GRKP
Sbjct: 241 GVGLMVLQQFGGINAVCFYVSSIFEVAGFSPSVGTIIYAILQVVVVALNTTIIDKVGRKP 300
Query: 347 LLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMS 406
LLL +A+GL++ CL+ +F+LK + LAL+S P L + G+L+YIG+FS+GMG PWV+MS
Sbjct: 301 LLLVSASGLVIACLITGLSFYLKVHELALKSAPMLAVTGILLYIGTFSAGMGPIPWVIMS 360
Query: 407 EIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVV 466
EIFP+NIKGV GSL TLVNWF AWA+S+TFNFL +WSSYGTF+LYAA+N + I F+ +V
Sbjct: 361 EIFPLNIKGVSGSLATLVNWFCAWAVSFTFNFLMSWSSYGTFILYAAINAMTIAFVALLV 420
Query: 467 PETKGRTLEEIQATMN 482
PETKGRTLE+IQA +
Sbjct: 421 PETKGRTLEQIQAAIR 436
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 483 | ||||||
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.904 | 0.943 | 0.643 | 7.6e-151 | |
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.896 | 0.898 | 0.576 | 4e-129 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.902 | 0.927 | 0.558 | 1.7e-128 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.888 | 0.912 | 0.508 | 8.2e-115 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.900 | 0.877 | 0.457 | 6e-103 | |
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.898 | 0.915 | 0.430 | 5.8e-98 | |
| TAIR|locus:505006329 | 467 | AT3G05165 [Arabidopsis thalian | 0.898 | 0.929 | 0.419 | 7.4e-98 | |
| TAIR|locus:2092379 | 488 | AT3G20460 [Arabidopsis thalian | 0.900 | 0.891 | 0.409 | 4.1e-97 | |
| TAIR|locus:2096234 | 458 | AT3G05160 [Arabidopsis thalian | 0.898 | 0.947 | 0.421 | 1.8e-96 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.898 | 0.907 | 0.419 | 2e-95 |
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
Identities = 281/437 (64%), Positives = 334/437 (76%)
Query: 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITS 105
+MVYLST VAV GS++FG+ GYSSP Q AIR DLSL++AE+S+FGS+LTFGAMIGAITS
Sbjct: 26 WMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITS 85
Query: 106 GPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAE 165
GPIAD +GRKGAMRVSS C+ GWLAI F++G ++LDLGRLATGYGMG FSYVVP+F AE
Sbjct: 86 GPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAE 145
Query: 166 IAPKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPR 225
IAPK RGALT+ NQ+LI G S FIIGT+ TWR LAL+G+IPCA LGLF IPESPR
Sbjct: 146 IAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPR 205
Query: 226 WLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVT 285
WLAK+G+ EFEAAL+KLRGK ADIS+EA EIQ+YIETLERLPKA++LDLFQ+RY+ SV
Sbjct: 206 WLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVL 265
Query: 286 IGVGLMVIQQXXXXXXXXXXXXXXXQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRK 345
I GLMV QQ + AG G I YA+LQVV+T N ++DRAGRK
Sbjct: 266 IAFGLMVFQQFGGINGICFYTSSIFEQAGFPTRLGMIIYAVLQVVITALNAPIVDRAGRK 325
Query: 346 PXXXXXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLM 405
P K + +A E+VP L + G++VYIGSFS+GMGA PWV+M
Sbjct: 326 PLLLVSATGLVIGCLIAAVSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVM 385
Query: 406 SEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTV 465
SEIFPINIKGV G + TLVNWFGAWA+SYTFNFL +WSSYGTFL+YAA+N L IVF+ +
Sbjct: 386 SEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAI 445
Query: 466 VPETKGRTLEEIQATMN 482
VPETKG+TLE+IQA +N
Sbjct: 446 VPETKGKTLEQIQAIVN 462
|
|
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
Identities = 250/434 (57%), Positives = 308/434 (70%)
Query: 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSG 106
MV ST VAV GS+ FG+ VGYS+PTQ++IR+DL+LSLAE+S+FGSILT GAM+GA+ SG
Sbjct: 43 MVLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSG 102
Query: 107 PIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEI 166
I+DF GRKGAMR S+ CI GWLA++F++GAL LD+GR TGYG+G+FSYVVPV+ AEI
Sbjct: 103 KISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEI 162
Query: 167 APKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRW 226
+PK LRG LT+ NQL+IVIG+S F+IG++ +W+TLAL G+ PC VLL GL IPESPRW
Sbjct: 163 SPKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRW 222
Query: 227 LAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTI 286
LAK G +EF ALQKLRGKDADI+ EA IQ I+ LE LPKAR+ DL K+Y SV I
Sbjct: 223 LAKAGHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVII 282
Query: 287 GVGLMVIQQXXXXXXXXXXXXXXXQTAGL-SPSTGTISYALLQVVVTFFNIIMIDRAGRK 345
GV LMV QQ AG S GTI+ A +QV +T I+ID++GR+
Sbjct: 283 GVSLMVFQQFVGINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRR 342
Query: 346 PXXXXXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLM 405
P K L LE VP+L + GVL+Y+ +FS GMG PWV+M
Sbjct: 343 PLIMISAGGIFLGCILTGTSFLLKGQSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIM 402
Query: 406 SEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTV 465
SEIFPIN+KG+ GSL LVNW GAWA+SYTFNFL +WSS GTF LY+A I+F+ +
Sbjct: 403 SEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAKM 462
Query: 466 VPETKGRTLEEIQA 479
VPETKG+TLEEIQA
Sbjct: 463 VPETKGKTLEEIQA 476
|
|
| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 244/437 (55%), Positives = 307/437 (70%)
Query: 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITS 105
+MVYLST++AV GSY FGT VGYS+PTQ I E+L+LS +++SVFGSIL GA++GAITS
Sbjct: 33 WMVYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITS 92
Query: 106 GPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAE 165
G I+DFIGRKGAMR+SS + GWL IY ++G + LD GR TGYG G S+VVPVF AE
Sbjct: 93 GKISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAE 152
Query: 166 IAPKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPR 225
I+P++LRGAL + NQL IVIG ++ F+IG V WRTLAL GV PC VL G + IPESPR
Sbjct: 153 ISPRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPR 212
Query: 226 WLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVT 285
WL +G+H +FE ALQKLRG A+I++EA EIQEY+ +L LPKA L+DL K+ + V
Sbjct: 213 WLEMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVI 272
Query: 286 IGVGLMVIQQXXXXXXXXXXXXXXXQTAGLSPSTGTISYALLQVVVTFFNI-IMIDRAGR 344
+GVGLM QQ +AG SP+ G+I Y++ QVV+T ++IDR GR
Sbjct: 273 VGVGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVVLTALGATLLIDRLGR 332
Query: 345 KPXXXXXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVL 404
+P K +GLAL+ +PAL ++GVLVYIGSFS GMGA PWV+
Sbjct: 333 RPLLMASAVGMLIGCLLIGNSFLLKAHGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVI 392
Query: 405 MSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITT 464
MSEIFPIN+KG G L T+VNW +W +S+TFNFL WS +GTF +Y V +L I+FI
Sbjct: 393 MSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCVLAIIFIAK 452
Query: 465 VVPETKGRTLEEIQATM 481
+VPETKGRTLEEIQA M
Sbjct: 453 LVPETKGRTLEEIQAMM 469
|
|
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
Identities = 218/429 (50%), Positives = 290/429 (67%)
Query: 50 LSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIA 109
L+T VAVSGS+ FG+ +GYSSP Q+ + ++L+LS+AEYS+FGSILT GAMIGA SG IA
Sbjct: 34 LTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIA 93
Query: 110 DFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPK 169
D IGR+ M S CI GWLAIY S+ A+ LD+GR GYGMG+FS+VVPV+ AEI PK
Sbjct: 94 DMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPK 153
Query: 170 ELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAK 229
LRG T+ +QLLI +G S +++G+ WR LAL+G+IPC V ++GLF+IPESPRWLAK
Sbjct: 154 GLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAK 213
Query: 230 IGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVG 289
+GK EEFE ALQ+LRG+ ADIS E+ EI++Y L L + ++DLFQ +Y S+ +GVG
Sbjct: 214 VGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVG 273
Query: 290 LMVIQQXXXXXXXXXXXXXXXQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPXXX 349
LMV+QQ ++AG+S G I+ ++Q+ +T ++++D++GR+P
Sbjct: 274 LMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPLLL 333
Query: 350 XXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIF 409
+ L L GVLVY GSFS GMG PWV+MSEIF
Sbjct: 334 ISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTGVLVYTGSFSLGMGGIPWVIMSEIF 393
Query: 410 PINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPET 469
PI+IKG GSL T+V+W G+W IS+TFNFL W+ GTF ++A V ++F+ +VPET
Sbjct: 394 PIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAKLVPET 453
Query: 470 KGRTLEEIQ 478
KGRTLEEIQ
Sbjct: 454 KGRTLEEIQ 462
|
|
| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 199/435 (45%), Positives = 272/435 (62%)
Query: 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGP 107
V+LST VAVSGS+ G GVG+SS Q I +DLSLS+AEYS+FGSILT G +IGA+ SG
Sbjct: 58 VFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGK 117
Query: 108 IADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIA 167
+AD +GRK M F CI GWL + ++ A+ LD GRL G G+GIFSYV+PV+ AEIA
Sbjct: 118 VADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIA 177
Query: 168 PKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWL 227
PK +RG+ ANQL+ G S FFIIG WR L +VG++PC + LF IPESPRWL
Sbjct: 178 PKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWL 237
Query: 228 AKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG 287
AK+G+ +E ++LQ+LRG D DIS+EA I++ I+ E + ++ +LFQ+RY + + IG
Sbjct: 238 AKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIG 297
Query: 288 VGLMVIQQXXXXXXXXXXXXXXXQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPX 347
VGLM +QQ G + GT A + V +++D+ GR+
Sbjct: 298 VGLMFLQQLCGSSGVTYYASSLFNKGGFPSAIGTSVIATIMVPKAMLATVLVDKMGRRTL 357
Query: 348 XXXXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSE 407
+++G+ E P T GVL +I SF+ GMG PW++M+E
Sbjct: 358 LMASCSAMGLSALLLSVSYGFQSFGILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAE 417
Query: 408 IFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVP 467
IFP+N+K G+L T+ NW W I+YTFNF+ W++ G FL+++ V+ IVFI +VP
Sbjct: 418 IFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVFIYFLVP 477
Query: 468 ETKGRTLEEIQATMN 482
ETKGR+LEEIQA +N
Sbjct: 478 ETKGRSLEEIQALLN 492
|
|
| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 187/434 (43%), Positives = 270/434 (62%)
Query: 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGP 107
V LST VAV GS+SFG GY+S + + +DL LS+A++S FGS T GA IGA+ G
Sbjct: 31 VILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGN 90
Query: 108 IADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIA 167
+A IGR+G M VS F+CI GWL+I F++ + L+ GR+ +G G G+ SYVVPV+ AEI
Sbjct: 91 LAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEIT 150
Query: 168 PKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWL 227
PK +RG T +NQLL G + + G TWRTLAL+G +PC + ++GLF +PESPRWL
Sbjct: 151 PKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWL 210
Query: 228 AKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG 287
AK+G +E E +L +LRG+DADIS+EA+EIQ + +E K+ DLFQ++Y +++ +G
Sbjct: 211 AKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVG 270
Query: 288 VGLMVIQQXXXXXXXXXXXXXXXQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPX 347
+GLM+IQQ + AG S + GT + + +I++D+ GR+P
Sbjct: 271 IGLMLIQQFSGSAAVISYASTIFRKAGFSVAIGTTMLGIFVIPKAMIGLILVDKWGRRPL 330
Query: 348 XXXXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSE 407
+ L E P L+ V++YI +++ G+G PWV+MSE
Sbjct: 331 LMTSAFGMSMTCMLLGVAFTLQKMQLLSELTPILSFICVMMYIATYAIGLGGLPWVIMSE 390
Query: 408 IFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVP 467
IFPINIK GS+ TLV++ + ++Y FNFL WS+ GTF ++A + ++FI +VP
Sbjct: 391 IFPINIKVTAGSIVTLVSFSSSSIVTYAFNFLFEWSTQGTFFIFAGIGGAALLFIWLLVP 450
Query: 468 ETKGRTLEEIQATM 481
ETKG +LEEIQ ++
Sbjct: 451 ETKGLSLEEIQVSL 464
|
|
| TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
Identities = 182/434 (41%), Positives = 264/434 (60%)
Query: 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGP 107
V LST VAV ++S+G GY+S + AI ++L LS+A++S FGS L G +GA+ SG
Sbjct: 30 VILSTFVAVCSAFSYGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVGALFSGQ 89
Query: 108 IADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIA 167
+A +GR+ + F C+ GWL+I F++ LDLGR++ G G+G+ SYVVPV+ AEI
Sbjct: 90 LAVILGRRRTLWACDFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEIT 149
Query: 168 PKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWL 227
PK +RGA T++NQLL G S + GTV WR +A++G IPC + +G+F IPESPRWL
Sbjct: 150 PKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIPESPRWL 209
Query: 228 AKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG 287
AKI +E E++L +LRGKD D+S EA EIQ + LE K+ D+FQK+Y ++ +G
Sbjct: 210 AKIRLSKEVESSLHRLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKYRRTLVVG 269
Query: 288 VGLMVIQQXXXXXXXXXXXXXXXQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPX 347
+GLM+IQQ + AG S G++ + + + +I++DR GR+P
Sbjct: 270 IGLMLIQQLSGASGITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVGLILVDRWGRRPL 329
Query: 348 XXXXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSE 407
+ + E +P +LVY G F+ G+G PWV+MSE
Sbjct: 330 LLASAVGMSIGSLLIGVSFTLQQMNVLPELIPIFVFVNILVYFGCFAFGIGGLPWVIMSE 389
Query: 408 IFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVP 467
IFPINIK G++ L +W W +SY FNF+ WS+ GTF ++AAV + +FI +VP
Sbjct: 390 IFPINIKVSAGTIVALTSWTSGWFVSYAFNFMFEWSAQGTFYIFAAVGGMSFIFIWMLVP 449
Query: 468 ETKGRTLEEIQATM 481
ETKG++LEE+QA++
Sbjct: 450 ETKGQSLEELQASL 463
|
|
| TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 178/435 (40%), Positives = 272/435 (62%)
Query: 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSG 106
++ +T A+ G++S+GT G++SP Q I L+LSLAE+S FG++LT G ++GA SG
Sbjct: 52 ILLFTTFTALCGTFSYGTAAGFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGAAMSG 111
Query: 107 PIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEI 166
+AD GR+GA+ VS+ C+AGWL I FS+ SLD+GRL G G+ SYVVPV+ EI
Sbjct: 112 KLADVFGRRGALGVSNSFCMAGWLMIAFSQATWSLDIGRLFLGVAAGVASYVVPVYIVEI 171
Query: 167 APKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRW 226
APK++RG ++ N L++ + +++G+V +W+ LAL+ +PC +GLF IPESPRW
Sbjct: 172 APKKVRGTFSAINSLVMCASVAVTYLLGSVISWQKLALISTVPCVFEFVGLFFIPESPRW 231
Query: 227 LAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTI 286
L++ G+ +E E +LQ+LRG + DI++EA EI++Y++ L+ + DLF RY VT+
Sbjct: 232 LSRNGRVKESEVSLQRLRGNNTDITKEAAEIKKYMDNLQEFKEDGFFDLFNPRYSRVVTV 291
Query: 287 GVGLMVIQQXXXXXXXXXXXXXXXQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKP 346
G+GL+V+QQ + +G + G + +++Q V + I+++D+ GR+
Sbjct: 292 GIGLLVLQQLGGLSGYTFYLSSIFKKSGFPNNVGVMMASVVQSVTSVLGIVIVDKYGRRS 351
Query: 347 XXXXXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMS 406
++YGL P T GVLV++ S + G+G PWV++S
Sbjct: 352 LLTVATIMMCLGSLITGLSFLFQSYGLLEHYTPISTFMGVLVFLTSITIGIGGIPWVMIS 411
Query: 407 EIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVV 466
E+ PINIKG G+L L +W W +SYTFNFL WSS G F +Y ++ +GI+F+ +V
Sbjct: 412 EMTPINIKGSAGTLCNLTSWSSNWFVSYTFNFLFQWSSSGVFFIYTMISGVGILFVMKMV 471
Query: 467 PETKGRTLEEIQATM 481
PET+GR+LEEIQA +
Sbjct: 472 PETRGRSLEEIQAAI 486
|
|
| TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 183/434 (42%), Positives = 264/434 (60%)
Query: 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGP 107
V LST VAV S+S+G GY+S + AI ++L LS+A++S FGS L G +GA+ SG
Sbjct: 21 VILSTFVAVCSSFSYGCANGYTSGAETAIMKELDLSMAQFSAFGSFLNLGGAVGALFSGQ 80
Query: 108 IADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIA 167
+A +GR+ + CI GWL+I F++ L LDLGR++ G G+G+ SYVVPV+ AEI
Sbjct: 81 LAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLGRISLGIGVGLTSYVVPVYIAEIT 140
Query: 168 PKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWL 227
PK +RGA +++ LL G S + GTV WR LA++G +PC + ++G++ IPESPRWL
Sbjct: 141 PKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAVIGALPCFIPVIGIYFIPESPRWL 200
Query: 228 AKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG 287
AKIG +E E +L +LRGKDAD+S EA EIQ + LE K+ D+FQK+Y ++ +G
Sbjct: 201 AKIGSVKEVENSLHRLRGKDADVSDEAAEIQVMTKMLEEDSKSSFCDMFQKKYRRTLVVG 260
Query: 288 VGLMVIQQXXXXXXXXXXXXXXXQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPX 347
+GLM+IQQ + AG S G++ + + + +I++DR GR+P
Sbjct: 261 IGLMLIQQLSGASGITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVGLILVDRWGRRPL 320
Query: 348 XXXXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSE 407
+ L E +P +LVY G F+ G+G PW++MSE
Sbjct: 321 LLASAVGMSIGSLLIGVSFTLQEMNLFPEFIPVFVFINILVYFGFFAIGIGGLPWIIMSE 380
Query: 408 IFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVP 467
IFPINIK GS+ L +W W +SY FNF+ WS+ GTF ++A V L ++FI +VP
Sbjct: 381 IFPINIKVSAGSIVALTSWTTGWFVSYGFNFMFEWSAQGTFYIFAMVGGLSLLFIWMLVP 440
Query: 468 ETKGRTLEEIQATM 481
ETKG++LEE+QA++
Sbjct: 441 ETKGQSLEELQASL 454
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
Identities = 182/434 (41%), Positives = 269/434 (61%)
Query: 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGP 107
V LST +AV GS+SFG +GY+S + I +DL LS+A++S F S+ T GA IGA+ SG
Sbjct: 35 VILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGK 94
Query: 108 IADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIA 167
+A +GR+ M VS +CI GW +I F++ + L+ GR+++G G+G+ SYVVPV+ AEI+
Sbjct: 95 MAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEIS 154
Query: 168 PKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWL 227
PK +RG T NQLL G + + G WR LAL+G +PC + ++GLF +PESPRWL
Sbjct: 155 PKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESPRWL 214
Query: 228 AKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG 287
AK+G +E E +L +LRG +ADIS+EA++I+ + +E K+ DLFQ++Y +++ +G
Sbjct: 215 AKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVG 274
Query: 288 VGLMVIQQXXXXXXXXXXXXXXXQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPX 347
+GLM+IQQ + AG S + G+ L + +I++D+ GR+P
Sbjct: 275 IGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTLLGLFMIPKAMIGVILVDKWGRRPL 334
Query: 348 XXXXXXXXXXXXXXXXXXXXXKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSE 407
+ L E P T V +YIG+++ G+G PWV+MSE
Sbjct: 335 LLTSVSGMCITSMLIGVAFTLQKMQLLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSE 394
Query: 408 IFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVP 467
IFP+NIK GS+ TLV+W + ++Y FNFL WS+ GTF ++ AV L ++FI +VP
Sbjct: 395 IFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFGAVGGLALLFIWLLVP 454
Query: 468 ETKGRTLEEIQATM 481
ETKG +LEEIQA++
Sbjct: 455 ETKGLSLEEIQASL 468
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P93051 | ERDL7_ARATH | No assigned EC number | 0.6659 | 0.9523 | 0.9935 | yes | no |
| Q9JIF3 | GTR8_MOUSE | No assigned EC number | 0.3340 | 0.9047 | 0.9161 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3253 | 0.8198 | 0.8665 | yes | no |
| Q9UGQ3 | GTR6_HUMAN | No assigned EC number | 0.3115 | 0.9420 | 0.8974 | yes | no |
| Q9JJZ1 | GTR8_RAT | No assigned EC number | 0.3394 | 0.9171 | 0.9267 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 483 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 6e-85 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 3e-80 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 8e-56 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-20 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-19 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 6e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-13 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-12 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-09 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-07 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 9e-07 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 1e-06 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-06 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 8e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 9e-04 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 6e-85
Identities = 150/449 (33%), Positives = 222/449 (49%), Gaps = 24/449 (5%)
Query: 52 TLVAVSGSYSFGTGVGYSSPTQNAI-----------REDLSLSLAEYSVFGSILTFGAMI 100
LVA G + FG G I + S + SI + G +I
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 101 GAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGA--LSLDLGRLATGYGMGIFSYV 158
G++ +G + D GRK ++ + + + + G L F++G L +GR+ G G+G S +
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121
Query: 159 VPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV-------ATWRTLALVGVIPCA 211
VP++ +EIAPK+LRGAL S QL I G IIG WR + +P
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 212 VLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKAR 271
+LL+GL +PESPRWL GK EE A L KLRG + E ++E +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241
Query: 272 LLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPST-GTISYALLQVV 330
L K + +GV L + QQ GINAI +Y+ IF+T GLS S TI ++ V
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301
Query: 331 VTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYI 390
TF I ++DR GR+PLLL A G+ + L+L A + + + +L++I
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVA---KSKGAGIVAIVFILLFI 358
Query: 391 GSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLL 450
F+ G G PWV++SE+FP+ ++ ++ T NW + I + F + FL+
Sbjct: 359 AFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLV 418
Query: 451 YAAVNILGIVFITTVVPETKGRTLEEIQA 479
+A + +L I+F+ VPETKGRTLEEI
Sbjct: 419 FAGLLVLFILFVFFFVPETKGRTLEEIDE 447
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 3e-80
Identities = 157/481 (32%), Positives = 245/481 (50%), Gaps = 28/481 (5%)
Query: 24 GEQNLADENGGSGKKTGSKDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDL--- 80
+ NLAD + G + + V L +L+A G FG G +
Sbjct: 2 SDANLADASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFT 61
Query: 81 -----SLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS 135
S S + + + SI G IGA+ +G ++D GRK ++ + + + + G + + +
Sbjct: 62 SANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA 121
Query: 136 EGALSLDL---GRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFI 192
ALS+++ GR+ G G+GI S +VP++ +EIAPK LRGALTS QL I G +
Sbjct: 122 AFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181
Query: 193 IGTVAT-------WRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRG 245
G+ WR + +IP +L LGLF +PESPRWL G+ EE +L +LRG
Sbjct: 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRG 241
Query: 246 ---KDADISQEATEIQEYIETLERLPKARLLDLF--QKRYLHSVTIGVGLMVIQQFGGIN 300
+D ++ E I +R + LF +R + +GV L QQF GIN
Sbjct: 242 TSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGIN 301
Query: 301 AIAFYAANIFQTAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLL 357
AI +Y+ IF+ AG+S +I + TF I ++DR GR+PLLL A G+ +
Sbjct: 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI 361
Query: 358 GCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVG 417
+L G + +S + + +L++I F+ G G PWV++SEIFP++++ G
Sbjct: 362 CLFVLGILGASFVTGSS-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420
Query: 418 GSLTTLVNWFGAWAISYTFNF-LETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEE 476
S+ NW + + + F LE+ G F+ + +N+LG++F+ +PETKGRTLEE
Sbjct: 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480
Query: 477 I 477
I
Sbjct: 481 I 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 8e-56
Identities = 136/486 (27%), Positives = 224/486 (46%), Gaps = 62/486 (12%)
Query: 39 TGSKDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIR----------EDLSLSLAEYS 88
+S Y+ + TLVA G FG S T ++ E + SL +
Sbjct: 2 NTQYNSSYIFSI-TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFC 60
Query: 89 VFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEG----------- 137
V +++ G +IG G ++ GR+ ++++++ + L + E
Sbjct: 61 VASALI--GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTG 118
Query: 138 -ALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGA-----STFF 191
+ R+ G G+G+ S + P++ AEIAP +RG L S NQ I+ G +F
Sbjct: 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF 178
Query: 192 IIGTVAT-------WRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLR 244
I + WR + IP + L+ L+ +PE+PR+L GK E+ E L+K+
Sbjct: 179 IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIM 238
Query: 245 GKDADISQEATEIQEYIETLE-RLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIA 303
G + +QE +L+ L +F + IGV L V QQF GIN +
Sbjct: 239 GN----TLATQALQEIKHSLDHGRKTGGKLLMFGVGV---IVIGVMLSVFQQFVGINVVL 291
Query: 304 FYAANIFQTAGLSPSTG---TISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCL 360
+YA IF+T G S TI ++ + T I+ +D+ GRKPL + A G+ +G
Sbjct: 292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 351
Query: 361 LLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSL 420
L AF+ + G+ + L +L Y+ +F+ G WVL+SEIFP I+G ++
Sbjct: 352 SLGTAFYTQAPGI-------VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAI 404
Query: 421 TTLVNWFGAWAISYTFNFLETWSSYG-------TFLLYAAVNILGIVFITTVVPETKGRT 473
W + +S+TF ++ S ++ +Y + +L +F+ VPETKG+T
Sbjct: 405 AVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 464
Query: 474 LEEIQA 479
LEE++A
Sbjct: 465 LEEMEA 470
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-20
Identities = 92/405 (22%), Positives = 163/405 (40%), Gaps = 54/405 (13%)
Query: 92 SILTFGAMIGAITSGPIADFIGRKGAMRVSSFV-CIAGWLAIYFSEGALSLDLGRLATGY 150
S G ++G+ G ++D GRK + +S+ V ++G L FS + RL G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRLLVGM 192
Query: 151 GMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVA---------TWRT 201
G+G V E PK+ R ++ FF +G V WR
Sbjct: 193 GIGGIWVQAVVLNTEFLPKKQRA--------IVGTLIQVFFSLGLVLLPLVAYFIPDWRW 244
Query: 202 LALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKD-ADISQEATEIQEY 260
L L +P + L + +PESPRWL G+ EE LQ++ + + E +
Sbjct: 245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLE 304
Query: 261 IETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYA---------ANIFQ 311
+ + LDLF+ L T+ LM++ F A ++Y NI+
Sbjct: 305 KDLSSSKKQYSFLDLFRTPNLRKTTL--CLMML-WFT--TAFSYYGLVLDLGNLGGNIYL 359
Query: 312 TAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTY 371
+S L+++ +++IDR GR+ + LLLA L
Sbjct: 360 DLFIS--------GLVELPAKLITLLLIDRLGRRY--------TMAASLLLAGVALLLLL 403
Query: 372 GLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWA 431
+ ++ + L A ++ +S ++ +E++P ++ +G + + + G+
Sbjct: 404 FVPVD-LYFLRTALAVLGKFGITSAFQMV-YLYTAELYPTVVRNLGVGVCSTMARVGS-I 460
Query: 432 ISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEE 476
IS +L + +L+ + +L + T +PETKG L E
Sbjct: 461 ISPFLVYLGEKWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-19
Identities = 83/364 (22%), Positives = 128/364 (35%), Gaps = 38/364 (10%)
Query: 67 GYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126
G+++P AI + L + S G GA+ GP+AD IGR+ + S +
Sbjct: 37 GFAAP---AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFS 93
Query: 127 AGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIG 186
L + L + R G G+G + +E APK RG IG
Sbjct: 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153
Query: 187 ASTFFIIGTVAT----WRTLALVG-VIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQ 241
A+ + WR+L VG + P +LLL + +PES +L E +
Sbjct: 154 AAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRP----ETVRR 209
Query: 242 KLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINA 301
+ + EA + + ++ LFQ + + L + G
Sbjct: 210 IVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVG---- 265
Query: 302 IAFYAANIF-----QTAGLSPSTGTISYALLQ---VVVTFFNIIMIDRAGRKPLLLFAAT 353
Y + G S S AL V+ + + DR G + L
Sbjct: 266 --VYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL---- 319
Query: 354 GLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINI 413
LLL A F G L S L L G + G F +G + + LM+ +P I
Sbjct: 320 ------LLLLGAVFAVLVGSTLFSPTLLLLLGAIA--GFFVNGGQSGLYALMALFYPTAI 371
Query: 414 KGVG 417
+ G
Sbjct: 372 RATG 375
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 6e-14
Identities = 107/449 (23%), Positives = 173/449 (38%), Gaps = 85/449 (18%)
Query: 97 GAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLG------RLATGY 150
G + G + G +AD +GRK + + I +A S G+ + R G
Sbjct: 68 GTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV 127
Query: 151 GMGIFSYVVPVFTAEIAPKELRGALTS---ANQ----------LLIVIGA--STFFIIGT 195
G+G + + T+E A K+ RGA+ + A Q LIV+ +
Sbjct: 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187
Query: 196 VAT------------WRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQK- 242
A+ WR L G +P + L IPE+PR+ A + K E A+
Sbjct: 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA 247
Query: 243 -LRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINA 301
L+ K E + +E PKA D F + G L+ +
Sbjct: 248 VLQVKIEAEPDEVEKASTAVEV----PKASWSDFFTHFFKWRH--GKHLLGTAGSWFLLD 301
Query: 302 IAFYAANIFQTAGLS------PSTGTISY------ALLQVVVT--------FFNIIMIDR 341
IAFY N+ Q LS P+ +Y A+ +++ + + ++D
Sbjct: 302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI 361
Query: 342 AGRKPLLL--FAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGA 399
GRKP+ L F +L +L A L T+G L + + + +F G A
Sbjct: 362 IGRKPIQLMGFFILTVLF-FVLGFAYNHLSTHGF-------LAIYVLAQFFANF--GPNA 411
Query: 400 TPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSS----------YGTFL 449
T +++ E+FP + ++ GA + F +L G L
Sbjct: 412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVL 471
Query: 450 L-YAAVNILGIVFITTVVPETKGRTLEEI 477
+A LGI+F T ++PETKG++LEE+
Sbjct: 472 EIFALFMFLGILF-TLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 4/174 (2%)
Query: 52 TLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF 111
L+ G + G G SP + EDL LS ++ + S + G +G++ +G ++D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 112 IGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKEL 171
GR+ + + + G L + F+ L +GR G G G AE P +
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 172 RGALTSANQLLIVIGASTFFIIGTV----ATWRTLALVGVIPCAVLLLGLFLIP 221
RG +GA ++G + WR L L+ I +L L L +
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 68/363 (18%), Positives = 121/363 (33%), Gaps = 50/363 (13%)
Query: 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF 134
+ EDL +S E + + + G + +G ++D GR+ + + + G L + F
Sbjct: 22 YLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF 81
Query: 135 SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG 194
+ L + R+ G G G A+ P E RG +GA+ ++G
Sbjct: 82 ASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLG 141
Query: 195 ----TVATWRTLALVGVIPCAVL-LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDAD 249
++ WR L+ I + +L L+P P + EE A L
Sbjct: 142 GLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVP------- 194
Query: 250 ISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANI 309
K L + + L ++ A+ Y
Sbjct: 195 --------------------------AWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLY 228
Query: 310 FQTAGLSPSTGTISYALLQVVVTFFNII---MIDRAGRKPLLLFAATGLLLGCLLLAAAF 366
+ GLS + L ++ ++ + DR GR+ LL A L+L L LA
Sbjct: 229 QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS 288
Query: 367 FLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNW 426
++ L L+ +G + + L+S++ P +G L
Sbjct: 289 LTESSLWLL---------VALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGS 339
Query: 427 FGA 429
G
Sbjct: 340 LGG 342
|
Length = 346 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 2e-12
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 24/189 (12%)
Query: 66 VGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVC 125
VG+ P+ +DL + + + G I+ G M+GA G +AD +GRK + + +
Sbjct: 186 VGFVLPSA---EKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC--LS 240
Query: 126 IAGWLAIY--FSEGALSLDLGRLATGYGMG-----IFSYVVPVFTAEIAPKELR------ 172
+ G+ A + F +G RL +G+G+G +FSY E + L
Sbjct: 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300
Query: 173 ---GALTSANQLLIVIGASTFFIIGTV---ATWRTLALVGVIPCAVLLLGLFLIPESPRW 226
G +A I+ F +G+ +WR +V PC + L +PESPR+
Sbjct: 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
Query: 227 LAKIGKHEE 235
+ GKH+E
Sbjct: 361 FLENGKHDE 369
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 89/417 (21%), Positives = 153/417 (36%), Gaps = 51/417 (12%)
Query: 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGW 129
S ++EDL LS A+Y S ++G ++G G + D G R + V I W
Sbjct: 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFG----ARKTLAVFIVIW 69
Query: 130 ----LAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTS----ANQL 181
F+ +SL + R+ G F + + A P R S A L
Sbjct: 70 GVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL 129
Query: 182 LIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLI----PESPRWLAKIGKHEEFE 237
+IG I +W+ ++ + + + P+ +WL + K+
Sbjct: 130 GGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVG 189
Query: 238 AALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMV----- 292
L + +GK +T + I+ L + + L L Q V IG+G +
Sbjct: 190 GLLAEQQGK-----GPSTPKKYQIKELLKDRRVWGLALGQ----FLVNIGLGFFLTWFPT 240
Query: 293 -IQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFA 351
+ Q G++ + AG ++ + + + + R L+FA
Sbjct: 241 YLVQERGLSIL---------EAGF---MASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA 288
Query: 352 ATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPI 411
++ L+L+ F A V A LV +G F G GA W L+S+ P
Sbjct: 289 RKTAIIAGLVLSLLMF------ATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPG 342
Query: 412 NIKGVGGSLTTLVNWFGAWAISYTFNFLE--TWSSYGTFLLYAAVNILGIVFITTVV 466
NI G+ G L + G + T S G ++ AA+ ++G + +V
Sbjct: 343 NIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLLV 399
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 85/367 (23%), Positives = 127/367 (34%), Gaps = 47/367 (12%)
Query: 100 IGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVV 159
GA+ G D GR+ M S + AG LA F+ G +++ + RL G GMG
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121
Query: 160 PVFTAEIAPKELR----GALTSANQLLIVIGASTFFIIGTV--ATWRTLALVGVIPCAVL 213
+ E PK LR G L S + V+ A + ++ V WR L + ++P
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181
Query: 214 LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLL 273
L IPE+ W K + L G + I+ + A ++
Sbjct: 182 LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLA-----------AAMV 230
Query: 274 DLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTF 333
KR+ V + V L++ + GLSP T +V F
Sbjct: 231 QSAGKRWPTFVYLVV-LVLFANLYSHPIQDLLPTYLKADLGLSPHTVA-------NIVVF 282
Query: 334 FNIIMI----------DRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTL 383
NI I D GR+ + + G LL+ F + +V L L
Sbjct: 283 SNIGAIVGGCVFGFLGDWLGRRKAYVCSLL---AGQLLIIPVFAIGA------NVAVLGL 333
Query: 384 AGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLT-TLVNWFGAWAISYTFNFLETW 442
+ G+ + E FP + + G T L N GA A +
Sbjct: 334 GLFFQQM--LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL 391
Query: 443 SSYGTFL 449
YGT L
Sbjct: 392 DEYGTAL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 38/184 (20%), Positives = 60/184 (32%), Gaps = 16/184 (8%)
Query: 284 VTIGVGLMVIQQFGGINAIAFYAANIFQTA-GLSPSTGTISYALLQVVVTFFNII---MI 339
+ + + L G + Y Q GLS + + +L + ++ +
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 340 DRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGA 399
DR GR+ LLL L LLL A L L+ +G
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAP-----------SLALLLVALLLLGFGLGFAFP 284
Query: 400 TPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFL-ETWSSYGTFLLYAAVNILG 458
L SE+ P +G L G L +T G FL+ AA+ +L
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 459 IVFI 462
+ +
Sbjct: 345 ALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 94/418 (22%), Positives = 153/418 (36%), Gaps = 100/418 (23%)
Query: 80 LSLSLAEYSVFGSILTFGAM-IGAITSGPIADFIGRKGAMRVS------SFVCIAGWLAI 132
L LA ++ F F A +GAI G D IGRK + ++ + I G L
Sbjct: 31 LVALLATFATFA--AGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI-GLLPS 87
Query: 133 YFSEGA---LSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLL----IVI 185
Y + G + L L RL G+ +G ++ AE AP RG S Q+ +++
Sbjct: 88 YATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLL 147
Query: 186 GASTFFIIGTVAT--------WRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFE 237
A T ++ + WR LV + + L + E+P FE
Sbjct: 148 AALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP----------VFE 197
Query: 238 AALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFG 297
A +K + +R P A L ++ +G+GL++
Sbjct: 198 KAQEKHK-------------------KKRGPIAETL----TKHRKPFLLGLGLVIAT--- 231
Query: 298 GINAIAFYAANIF------QTAGLSPSTGTISYALLQVVVTFFNII-----MIDRAGRKP 346
FY + QT GLS ++ + L+ ++ FF I + DR GR+P
Sbjct: 232 ---TTTFYLITTYLPTYLTQTLGLSANSALL--VLMLSLILFFITIPLSGALSDRIGRRP 286
Query: 347 LLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWV-LM 405
+L+ + AA +AL + TL LV + GM P +
Sbjct: 287 VLI---------IFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFL 337
Query: 406 SEIFPINIKGVGGSLT---------TLVNWFGAWAISYTFNFLETWSSYGTFLLYAAV 454
E+FP ++ G SL + A ++ T + W + G +L A+
Sbjct: 338 PELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD----WYAIGYYLAALAL 391
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 9/178 (5%)
Query: 76 IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY-- 133
+ ++ L +A+ S G + GA+ G +AD IGRK + VS V + G ++
Sbjct: 41 MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS--VALFGLFSLATA 98
Query: 134 FSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFII 193
+ SL + RL TG G+G + T+E LRG S + G + +I
Sbjct: 99 QAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158
Query: 194 GTVAT----WRTLALV-GVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGK 246
G +A WR + V GV P ++ L + +PES + G ++ L+ L G+
Sbjct: 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGE 216
|
Length = 406 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 101 GAITSGPIADFIGRKGAMRVSSFVCIA-GWLAIYFSEGALSLDLGRLATGYGM-GIFS-- 156
G + G + D GR+ AM V S V + G LA F+ G +L + RL G GM G +
Sbjct: 71 GGLLLGAMGDRYGRRLAM-VISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSS 129
Query: 157 --YVVPVFTAEIAPKELR----GALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPC 210
YV+ E PK LR G L S + V+ A + ++ V WR L +G++P
Sbjct: 130 ATYVI-----ESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI 184
Query: 211 AVLLLGLFLIPESPRWLAKIGKHEEFEAALQKL 243
L +PE+ W K + L
Sbjct: 185 IFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 2/170 (1%)
Query: 53 LVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI 112
L+A++ G + ++E L LS AE + S+ G ++GA+ G ++D +
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 113 GRK-GAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKEL 171
GR+ + + + G L + + L + L G+G+G + +E+AP E
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 172 RGALTSANQLLIVIGASTF-FIIGTVATWRTLALVGVIPCAVLLLGLFLI 220
RG + +G + + G + V +I A+ LL L+
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 8e-04
Identities = 87/402 (21%), Positives = 142/402 (35%), Gaps = 54/402 (13%)
Query: 76 IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS 135
I+ DL L+ E + + G G G +AD GRK M S G +
Sbjct: 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103
Query: 136 EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGA----LTSANQLLIVIGASTFF 191
G + L L R G GM + E PK L+ L S + +I A
Sbjct: 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163
Query: 192 IIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADIS 251
WR VG++P +++ PES W KL GK
Sbjct: 164 SFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEE------------AKLSGKG---- 207
Query: 252 QEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGG---INAI--AFYA 306
++ ++ + + LF + +T+ V +++ FG I + + A
Sbjct: 208 -------KHSQSAWSVFSLSMKGLFNRAQF-PLTLCVFIVLFSIFGANWPIFGLLPTYLA 259
Query: 307 ANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAF 366
F T + S + A V+ + DR G K + GLL+ L + F
Sbjct: 260 GEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTF---SIGLLMSFLFIFPLF 314
Query: 367 FLKTYGLALESVPALTLAGVLVYIGSFSS-GMGATPWVLMSEIFPINIKGVGGSLTTLVN 425
+ L G ++ ++ G+G + + FP+ ++G+G L
Sbjct: 315 RI--------PQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLI---- 362
Query: 426 WFGAWAISYTFN-FLETWSSYGTFLLYAAVNILGIVFITTVV 466
+ A S TFN TW T L AA+ + + T++
Sbjct: 363 -YNLAATSGTFNSMAATWLG-ITMGLGAALTFIVAFWTATIL 402
|
Length = 426 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 9e-04
Identities = 72/406 (17%), Positives = 119/406 (29%), Gaps = 54/406 (13%)
Query: 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF 134
I DL +S + G +GA + + R+ + + I L
Sbjct: 38 PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97
Query: 135 SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGA----LTSANQLLIVIGASTF 190
+ L L R G G+F + A + P RG + + L V+G
Sbjct: 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157
Query: 191 FIIGTVATWR-TLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDAD 249
+G + WR T + V+ LLL L+P S + G
Sbjct: 158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPG------------------ 199
Query: 250 ISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANI 309
P LL L ++ + + L + F I + ++
Sbjct: 200 ------------------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV 241
Query: 310 FQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLK 369
AG S S ++ + N++ A R P A LLL LLA F
Sbjct: 242 ---AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGA 298
Query: 370 TYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGA 429
+ LAL L+++ F+ + + GSL G
Sbjct: 299 SPALAL----------ALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGI 348
Query: 430 WAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLE 475
+ + Y A +L + + + RT
Sbjct: 349 ALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDRRTAA 394
|
Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 13/136 (9%)
Query: 97 GAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFS 156
G +I + SG + D GRK + V F+ + S L + R G+G
Sbjct: 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69
Query: 157 YVVPVFTAEIAPKELRG--------ALTSANQLLIVIGASTFFIIGTVATWR-TLALVGV 207
A+I P E RG + L +G ++ WR + +
Sbjct: 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGG----VLAQFLGWRAPFLFLAI 125
Query: 208 IPCAVLLLGLFLIPES 223
+ A +L FL+PE+
Sbjct: 126 LALAAFILLAFLLPET 141
|
Length = 141 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 483 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.98 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.98 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.98 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.98 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.98 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.87 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.87 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.84 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.82 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.81 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.77 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.74 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.73 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.71 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.69 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.58 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.58 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.54 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.53 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.51 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.49 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.48 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.47 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.46 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.46 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.45 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.44 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.44 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.43 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.41 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.41 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.4 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.4 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.39 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.39 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.38 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.38 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.36 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.35 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.35 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.34 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.34 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.33 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.33 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.33 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.32 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.32 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.31 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.31 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.31 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.3 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.29 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.29 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.28 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.27 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.27 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.26 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.26 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.26 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.25 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.25 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.24 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.24 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.24 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.23 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.22 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.22 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.22 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.21 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.21 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.21 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.2 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.2 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.2 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.2 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.19 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.18 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.18 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.18 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.17 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.17 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.17 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.17 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.17 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.17 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.16 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.16 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.15 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.15 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.13 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.12 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.1 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.1 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.09 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.08 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.07 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.07 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.07 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.06 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.05 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.04 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.04 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.03 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.03 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.03 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.02 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.0 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.98 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.97 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.94 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.94 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.93 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.93 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.93 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.92 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.88 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.88 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.84 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.83 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.81 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.8 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.78 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.76 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.75 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.74 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.74 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.73 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.71 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.7 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.69 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.66 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.64 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.63 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.59 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.59 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.59 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.59 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.58 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.54 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.53 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.52 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.51 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.41 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.4 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.39 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.36 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.27 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.26 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.24 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.22 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.1 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.89 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.85 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.85 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.83 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.8 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.77 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.66 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.51 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.36 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.31 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.31 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 97.26 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.97 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.89 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.79 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.68 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.58 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.32 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.1 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.87 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.86 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.77 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.58 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 94.45 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 94.22 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.33 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.94 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.95 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 91.75 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 90.88 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 90.27 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 88.38 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 88.03 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 83.08 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 82.75 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.62 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 80.19 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=324.30 Aligned_cols=437 Identities=32% Similarity=0.521 Sum_probs=363.6
Q ss_pred chhHHHHHHHHHHHhhhhhcccccccCcchHHHHh--------hhc--Cchh----HHHHHHHHHHHHHHHHHHhHHHhh
Q 011565 44 SLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIRE--------DLS--LSLA----EYSVFGSILTFGAMIGAITSGPIA 109 (483)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~--~s~~----~~~~~~s~~~l~~~~~~~~~G~l~ 109 (483)
..++......+..++.+-.+++.+..++..+.+.+ .+| .+++ ..+.+.+++.+|.++|++..|+++
T Consensus 5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la 84 (485)
T KOG0569|consen 5 LTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA 84 (485)
T ss_pred ccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777779999999999998765543 344 3333 357889999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHH
Q 011565 110 DFIGRKGAMRVSSFVCIAGWLAIYFS---EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIG 186 (483)
Q Consensus 110 dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG 186 (483)
||+|||..+.++.++..++.++..++ +++..++++|++.|+..|.......-++.|..|++.||......+.+..+|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 99999999999998888877777654 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHh-hCCHHHHHHHHHHHhcCcccchHHHHHHHH
Q 011565 187 ASTFFIIGT------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAK-IGKHEEFEAALQKLRGKDADISQEATEIQE 259 (483)
Q Consensus 187 ~~~~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (483)
.+++..++. .-.|++.+.+..+++++..+.+.++||||+|+.. +++.++|++.++++++.+++..+...+.++
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e 244 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLRE 244 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 999976654 4469999999999999999999999999999987 899999999999999887655544443333
Q ss_pred HHHHH-ccCchhhhHHhhhcCCcc-hHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHH
Q 011565 260 YIETL-ERLPKARLLDLFQKRYLH-SVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFF 334 (483)
Q Consensus 260 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 334 (483)
..+++ ++.++.+++++++++..+ ...+...+.....+.+.+...+|...++++.|++.. ......++..++.+++
T Consensus 245 ~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~ 324 (485)
T KOG0569|consen 245 IEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLV 324 (485)
T ss_pred HHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 334677899999987655 456666777788888899999999999999998864 5566678888999999
Q ss_pred HHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccc
Q 011565 335 NIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIK 414 (483)
Q Consensus 335 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 414 (483)
+.++.||.|||+++..+..++.+..+++.......+... ++..+..+...+++...+..+..|+.+-+.+|++|++.|
T Consensus 325 ~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R 402 (485)
T KOG0569|consen 325 SPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR 402 (485)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence 999999999999999999999988888887766554311 122233456666777778888899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHhhc
Q 011565 415 GVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482 (483)
Q Consensus 415 ~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (483)
+.+.++...++.+..++-...+..+.+.-+...|+++.+.+++..+..++.+||||+|+.+|+.++++
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 99999999999999999999999998833347888899999999999999999999999999988765
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=356.08 Aligned_cols=415 Identities=20% Similarity=0.226 Sum_probs=319.9
Q ss_pred hhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHH
Q 011565 45 LYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFV 124 (483)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 124 (483)
.++.|.+++++.++.+..+++...+++.+|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45677778888888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc---------
Q 011565 125 CIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT--------- 195 (483)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~--------- 195 (483)
++++.++++++++++.++++|+++|++.|+..+...+++.|++|+++|++.+++...++.+|.++++.++.
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999888876542
Q ss_pred --------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccc---hHHH---HHHHHHH
Q 011565 196 --------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADI---SQEA---TEIQEYI 261 (483)
Q Consensus 196 --------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~ 261 (483)
..+||+.+++.++++++.++..+++||+|+|+..+++.+++.+.++++...+... ..+. .+.+...
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 1369999999888888888888899999999999999999999999887654321 1110 0000000
Q ss_pred HH------HccC-----------------chhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHc-----
Q 011565 262 ET------LERL-----------------PKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTA----- 313 (483)
Q Consensus 262 ~~------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 313 (483)
.. .+.. ...+++++++.+.. +..+...+.++.....++.+..|+|.+++..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~-~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~ 480 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVR-EITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDY 480 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 01135556655444 4444445555555556677777777654321
Q ss_pred -------------------------------------CC---------------------C-------------------
Q 011565 314 -------------------------------------GL---------------------S------------------- 316 (483)
Q Consensus 314 -------------------------------------~~---------------------~------------------- 316 (483)
|. +
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 560 (742)
T TIGR01299 481 AALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTD 560 (742)
T ss_pred Hhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccc
Confidence 00 0
Q ss_pred ------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHH
Q 011565 317 ------------------------------------PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCL 360 (483)
Q Consensus 317 ------------------------------------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 360 (483)
......+..++.+++.+++++++||+|||+++..+.++.+++++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~l 640 (742)
T TIGR01299 561 FEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCF 640 (742)
T ss_pred hhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 00113344678889999999999999999999888888887777
Q ss_pred HHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 361 LLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
++.+. .+...+++..++.+++..+..+...++++|++|++.|++++|+.+....+|.+++|++++.+.
T Consensus 641 l~~~~------------~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 641 FLSFG------------NSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHH------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66553 222333333445555555666778899999999999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 011565 441 TWSSYGTFLLYAAVNILGIVFITTVVPETKGRT 473 (483)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (483)
+.+...++++.+++.++++++.+ ++||++++.
T Consensus 709 ~~~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 709 GITKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 76556667777776666655544 568888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=334.18 Aligned_cols=425 Identities=22% Similarity=0.265 Sum_probs=304.7
Q ss_pred chhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhh-----cCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHH
Q 011565 44 SLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDL-----SLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAM 118 (483)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~ 118 (483)
..++.+..+.++.++.+.++++.+..+...|.+.+++ +.++.+.+++.+.+.+++.++++++|+++||+|||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~ 89 (502)
T TIGR00887 10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVY 89 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3456667777888889999999999999988887753 34566789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc------hhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHH
Q 011565 119 RVSSFVCIAGWLAIYFSEG------ALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFI 192 (483)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~ 192 (483)
.++.+++.++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|..+++.
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 90 GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 7889999999999999999999999999999999999999999999988888776
Q ss_pred hhc---------------------------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHH-HHHHHHHHHh
Q 011565 193 IGT---------------------------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHE-EFEAALQKLR 244 (483)
Q Consensus 193 l~~---------------------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~-~~~~~~~~~~ 244 (483)
++. ..+||+.|.+.++++++..+..+++||+|+|+..+++.+ ++.+.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~ 249 (502)
T TIGR00887 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVL 249 (502)
T ss_pred HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence 642 137999999988888887777889999999998877764 4555555554
Q ss_pred cCcccchHHHHHHHHHHHHHccCchhhhHHhhhcC---CcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCch--
Q 011565 245 GKDADISQEATEIQEYIETLERLPKARLLDLFQKR---YLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPST-- 319 (483)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 319 (483)
..+.+.+.+ +.++. +++++..+.+++++++++ ..++..+......+.....++....+.|.+++..|.+...
T Consensus 250 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~ 326 (502)
T TIGR00887 250 QVKIEAEPD--EVEKA-STAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAAT 326 (502)
T ss_pred ccccccCcc--cccch-hccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccc
Confidence 322111111 00000 001111223567777532 2222222222222222222333445566666666664321
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHH
Q 011565 320 -------------GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGV 386 (483)
Q Consensus 320 -------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (483)
......++.+++.+++++++||+|||+.+..+..+..+++.++..... .. .....+...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~--~~------~~~~~~~~~ 398 (502)
T TIGR00887 327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN--HL------STHGFLAIY 398 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH--hc------chhHHHHHH
Confidence 122334466678899999999999999988887777766655554311 00 111112222
Q ss_pred HHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHH
Q 011565 387 LVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWS-----------SYGTFLLYAAVN 455 (483)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~-----------~~~~~~~~~~~~ 455 (483)
.+...++..+..+..+.+..|.+|++.|+++.|+.+..+.+|++++|.+.+.+.+.+ ....+.++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 478 (502)
T TIGR00887 399 VLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFM 478 (502)
T ss_pred HHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHH
Confidence 222233344556777888899999999999999999999999999999999987721 234667777777
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHh
Q 011565 456 ILGIVFITTVVPETKGRTLEEIQAT 480 (483)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (483)
+++.++ .+++||+++++.+|+++|
T Consensus 479 ~~~~i~-~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 479 FLGILF-TLLIPETKGKSLEELSGE 502 (502)
T ss_pred HHHHHH-heEeccCCCCCHHhhhCC
Confidence 766554 467799999999888764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=324.44 Aligned_cols=424 Identities=29% Similarity=0.527 Sum_probs=308.3
Q ss_pred hHHHHHHHHHHHhhhhhcccccccCcchHHHHhhh--------cCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHH
Q 011565 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDL--------SLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGA 117 (483)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~ 117 (483)
+.....+++..++.+..+++.+.+++..|.+++++ +.++.+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34555666677788999999999999999999988 8889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh------------hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHH
Q 011565 118 MRVSSFVCIAGWLAIYFS------------EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVI 185 (483)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~i 185 (483)
++++.++++++.+.++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999999888763 23567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc------------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHH
Q 011565 186 GASTFFIIGT------------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQE 253 (483)
Q Consensus 186 G~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
|..+++.++. ..+||+.|++.+++.++..+..+++||+|+++..+++.+++++..++..+.+.. ...
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HHH
Confidence 9988876542 358999999988887776666778999999988788777776666655433211 111
Q ss_pred HHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHH
Q 011565 254 ATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVV 330 (483)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 330 (483)
.++.++..+.++ ...+..+. ..............+......+...+|.|.+.+..|.+.. ......++..++
T Consensus 247 ~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHGR----KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHhh----hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 111111110000 00011111 0001111111122222233344456677877777776543 344556778889
Q ss_pred HHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC
Q 011565 331 VTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP 410 (483)
Q Consensus 331 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 410 (483)
+.+++++++||+|||+.+..+..+.+++.+++...... +...........++.........+..+.++.|.+|
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 394 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 394 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCC
Confidence 99999999999999999998888888877766543210 11112222222233333333445777899999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHH------h-hhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHhhc
Q 011565 411 INIKGVGGSLTTLVNWFGAWAISYTFNFLE------T-WSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATMN 482 (483)
Q Consensus 411 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (483)
++.|+++.|+.+..+++|.++++.+.+.+. + .+....+.+.+++++++.++.+++.+|+|+++.+|++++++
T Consensus 395 ~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 395 NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 999999999999999999999987777555 2 44556677777777777777777789999999998887764
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=320.02 Aligned_cols=439 Identities=33% Similarity=0.554 Sum_probs=356.2
Q ss_pred chhHHHHHHHHHHHhhhhhccc--ccccCcchHHHHhhhc-----Cch--hHHHHHHHHHHHHHHHHHHhHHHhhhhhch
Q 011565 44 SLYMVYLSTLVAVSGSYSFGTG--VGYSSPTQNAIREDLS-----LSL--AEYSVFGSILTFGAMIGAITSGPIADFIGR 114 (483)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~-----~s~--~~~~~~~s~~~l~~~~~~~~~G~l~dr~Gr 114 (483)
.............++.+..+++ .+...+....+.++.. .+. .+.+|+.+++.++..++++++|+++|++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GR 118 (513)
T KOG0254|consen 39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGR 118 (513)
T ss_pred CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445556666667777777775 6777787777777432 222 355999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhh
Q 011565 115 KGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG 194 (483)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~ 194 (483)
|+.++++.+++.++.+++++++|+++++++|+++|+|.|....+...+++|..|++.||...+..+....+|..++..++
T Consensus 119 k~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 119 KKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred ccc-----hhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcC-cccchHHHHHHH-HHHHHHccC
Q 011565 195 TVA-----TWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGK-DADISQEATEIQ-EYIETLERL 267 (483)
Q Consensus 195 ~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~ 267 (483)
... +||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++. +.+.+.+..+.+ +...+....
T Consensus 199 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
T KOG0254|consen 199 YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVA 278 (513)
T ss_pred hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 633 7999999999999887777999999999999999999999999999883 334444433333 111111111
Q ss_pred c-hhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC--chHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011565 268 P-KARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP--STGTISYALLQVVVTFFNIIMIDRAGR 344 (483)
Q Consensus 268 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~ 344 (483)
. +..+.+++++...++..+...+..+.++.......+|.+.+++..+.+. .......++..+++.+++.++.||+||
T Consensus 279 ~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gR 358 (513)
T KOG0254|consen 279 EGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGR 358 (513)
T ss_pred cccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 2235566654456667778888888888999999999999999888774 455667788888999999999999999
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHHHhcCC-cccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHH
Q 011565 345 KPLLLFAATGLLLGCLLLAAAFFLKTYGL-ALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTL 423 (483)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 423 (483)
|+.+..+...+.++++++.........+. ......+..+...+++...+..+..++.+.+.+|.+|.+.|+.+.++...
T Consensus 359 r~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~ 438 (513)
T KOG0254|consen 359 RKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVA 438 (513)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHH
Confidence 99999999999999998888766554321 12334566777788888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH-HHHhcccCCCCCCHHHHHHhhc
Q 011565 424 VNWFGAWAISYTFNFLETWSS-YGTFLLYAAVNILGIV-FITTVVPETKGRTLEEIQATMN 482 (483)
Q Consensus 424 ~~~~g~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 482 (483)
.+.+.+.+-........+... ...+..+.+++.+... +.+++.||+|+++.+|+++.++
T Consensus 439 ~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 439 VNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence 999988877666665555433 5667777777777767 7888999999999999987654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=319.34 Aligned_cols=432 Identities=33% Similarity=0.561 Sum_probs=316.1
Q ss_pred CchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCc--------hhHHHHHHHHHHHHHHHHHHhHHHhhhhhch
Q 011565 43 DSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLS--------LAEYSVFGSILTFGAMIGAITSGPIADFIGR 114 (483)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Gr 114 (483)
+..++.+....++.++.+...++.....+..+.+..+++.+ ..+.+++.+++.++..++++++|+++||+||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr 100 (481)
T TIGR00879 21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGR 100 (481)
T ss_pred cccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence 34455666677777777888889999999999888888877 8999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHH
Q 011565 115 KGAMRVSSFVCIAGWLAIYFSE---GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFF 191 (483)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~ 191 (483)
|++++.+.++++++.+++.+.+ +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++
T Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999996654 4558999999999999999999999999999999999999999999999999999
Q ss_pred Hhh---c----cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHH---HHHH
Q 011565 192 IIG---T----VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEI---QEYI 261 (483)
Q Consensus 192 ~l~---~----~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 261 (483)
.++ . ..+||+.|++.++..++.++..+++||+|++...+++.++..+...+....+.......... ....
T Consensus 181 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 988 3 56899999997777777767778889999887776666665555444433222211111100 0001
Q ss_pred HHHccCchhhhHHhhhcC--CcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHH
Q 011565 262 ETLERLPKARLLDLFQKR--YLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNI 336 (483)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g 336 (483)
+.+.+..+..+.+.++.. ..++..+...+..+..........++.+.+.+..|.+. +.......++.+++.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (481)
T TIGR00879 261 SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAI 340 (481)
T ss_pred HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111133333321 23444444455555544455566777788777777776 3455566778889999999
Q ss_pred HHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchh
Q 011565 337 IMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGV 416 (483)
Q Consensus 337 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 416 (483)
++.||++||+.+..+..+.+++++++........... ........+....++.++...+..+....+..|.+|++.|++
T Consensus 341 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (481)
T TIGR00879 341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS-SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK 419 (481)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc-ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHH
Confidence 9999999999988887777776666653221111000 000123333444444455555556777788899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Q 011565 417 GGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVPETKGRTLE 475 (483)
Q Consensus 417 ~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (483)
+.|+.+...++|.+++|.+.+.+.+ .+....+++.++++++++++..++.+|+|+++.+
T Consensus 420 ~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 420 GISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 9999999999999999999999887 5666677778888777777777777887766554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=325.42 Aligned_cols=390 Identities=19% Similarity=0.267 Sum_probs=299.1
Q ss_pred cchHHHHhhhcCc---hhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 011565 71 PTQNAIREDLSLS---LAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLA 147 (483)
Q Consensus 71 ~~~~~i~~~~~~s---~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 147 (483)
+..|.+.+|+|++ +.+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5567799999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc-chhHHHHHHhHHHHHHHHHHhhcCCCChhH
Q 011565 148 TGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV-ATWRTLALVGVIPCAVLLLGLFLIPESPRW 226 (483)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 226 (483)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.. .+||+.|++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 9999999999999999999999999999999999999999999988763 369999999888888777677889999999
Q ss_pred HHhhCCHHHHHHHHHHHhcCcccch-HHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHh
Q 011565 227 LAKIGKHEEFEAALQKLRGKDADIS-QEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFY 305 (483)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (483)
+..+++.+++.+.+++..+.+.... .+..+.+...+..++.++..++++++++..+...+...+..+.....++....+
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD 349 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999888887776654332211 111111111111112223567888988887776666555444333222223333
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHH
Q 011565 306 AANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAG 385 (483)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (483)
.+ ..+.+........++..+++.++.+++.||+|||+.+..+.++.+++++++... +.........
T Consensus 350 ~~----~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~ 415 (505)
T TIGR00898 350 LG----NLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV----------PVDLYFLRTA 415 (505)
T ss_pred cc----ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc----------CCCchHHHHH
Confidence 22 224444555666788888999999999999999999988887777776665543 1111223333
Q ss_pred HHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Q 011565 386 VLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTV 465 (483)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (483)
..++.+++.....+..+.+..|.+|++.|+++.|+.+....+|++++|.+.+ +.+.+...++.+++++.+++.++. ++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~ 493 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LF 493 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-Hc
Confidence 3334444444555677889999999999999999999999999999999998 656666777777777777765554 46
Q ss_pred ccCCCCCCHHH
Q 011565 466 VPETKGRTLEE 476 (483)
Q Consensus 466 ~~~~~~~~~~~ 476 (483)
+||+++++.+|
T Consensus 494 lpet~~~~l~~ 504 (505)
T TIGR00898 494 LPETKGVPLPE 504 (505)
T ss_pred CcCCCCCCCCC
Confidence 78888876543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=300.26 Aligned_cols=401 Identities=16% Similarity=0.150 Sum_probs=310.2
Q ss_pred CchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHH
Q 011565 43 DSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSS 122 (483)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~ 122 (483)
..++.++.+.+.+.+++....+.+-.++...|.+.+|.++|.+|.|++.+.++++|.++..+.|.++||.+.|+.+.+++
T Consensus 22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL 101 (448)
T COG2271 22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence 34556677777778888888888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhh--c----c
Q 011565 123 FVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG--T----V 196 (483)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~--~----~ 196 (483)
++.++.+++++++++++.+.++.+++|..+|..+|.+...+..|+|++|||+..++++++.++|..+.+++. + +
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877 4 4
Q ss_pred chhHHHHHHhHHHHHH-HHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHH-HHHHHHH-ccCchhhhH
Q 011565 197 ATWRTLALVGVIPCAV-LLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEI-QEYIETL-ERLPKARLL 273 (483)
Q Consensus 197 ~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 273 (483)
.+||..|++.++++++ +++.++..+|+|+..-- .+.++.. ++ ..+. +++.+.+ ....+.-++
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~~~-------~d-------~~e~~~~~~~~~~ls~~~i~~~ 246 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEEYR-------GD-------PLEIYEEEKENEGLTAWQIFVK 246 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHHhh-------cC-------chhhhhhhccCCCccHHHHHHH
Confidence 5899999998888777 55668888988863100 0011100 00 0000 0000000 011123345
Q ss_pred HhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhc--CCccchhhH
Q 011565 274 DLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRA--GRKPLLLFA 351 (483)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~ 351 (483)
.+++||..|.+.+...+....-++...|.|.|+.+..+.+..++......+-.++++|++++|+++||+ |||....+.
T Consensus 247 YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i 326 (448)
T COG2271 247 YVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALI 326 (448)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHH
Confidence 578999999999999999999999999999998886544344456777888899999999999999996 456554433
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHH-HHH
Q 011565 352 ATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWF-GAW 430 (483)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~ 430 (483)
+.+....+++.... .+..+.....+++...|+...+..-..-..+.|..|++..|++.|+...++++ |.+
T Consensus 327 ~~~~i~~~~~~~w~---------~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~ 397 (448)
T COG2271 327 FMLLITASLVLYWL---------APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAA 397 (448)
T ss_pred HHHHHHHHHHHHHc---------CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHH
Confidence 33322222222221 22235566677777777777777666677889999999999999999999999 999
Q ss_pred HHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhccc
Q 011565 431 AISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVP 467 (483)
Q Consensus 431 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
.+....|++.| .++...|.++.+.++++.++......
T Consensus 398 ~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 398 LAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988 47777777776666666655554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=284.17 Aligned_cols=368 Identities=17% Similarity=0.142 Sum_probs=282.1
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH
Q 011565 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127 (483)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 127 (483)
.+..+..+.++.|..+....+....+|++.+|+|+|..+.|+..|.|.+++.++.++...+.||+.||++++..+.++.+
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34455667777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhh----ccchhHHHH
Q 011565 128 GWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG----TVATWRTLA 203 (483)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~----~~~~wr~~f 203 (483)
+++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|..++ ..+|||+.|
T Consensus 91 ~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F 170 (394)
T COG2814 91 SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170 (394)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988888777766554 478999999
Q ss_pred HHhHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcc
Q 011565 204 LVGVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLH 282 (483)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (483)
++.+.++++..+. +..+| |+... ++++.+..+..+.+|+|..+
T Consensus 171 ~~ia~l~ll~~~~~~~~lP--~~~~~----------------------------------~~~~~~~~~~~~~l~~p~v~ 214 (394)
T COG2814 171 LAIAVLALLALLLLWKLLP--PSEIS----------------------------------GSLPGPLRTLLRLLRRPGVL 214 (394)
T ss_pred HHHHHHHHHHHHHHHHhCC--CccCC----------------------------------CCCCcchhHHHHHhcCchHH
Confidence 9998888886554 78888 21000 00112233455678888888
Q ss_pred hHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHH
Q 011565 283 SVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGC 359 (483)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (483)
..++...+.....+..+ .|.-|...+..|++. +.....++++.++|+.++|++.|| +.|+.+.....+.++..
T Consensus 215 ~~l~~t~l~~~g~F~~f---tYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~ 290 (394)
T COG2814 215 LGLLATFLFMTGHFALY---TYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL 290 (394)
T ss_pred HHHHHHHHHHcchhhhH---HhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHH
Confidence 77777666666555443 333344444456664 466777899999999999999999 88888887777777777
Q ss_pred HHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 360 LLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
+.+.+.. .+.........+.++..............+. -++.+..+.+++....++|..+|..++|.+
T Consensus 291 l~l~~~~-----------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~lGG~v 358 (394)
T COG2814 291 LALTFTG-----------ASPALALALLFLWGFAFSPALQGLQTRLARL-APDAADLAGSLNVAAFNLGIALGAALGGLV 358 (394)
T ss_pred HHHHHhc-----------chHHHHHHHHHHHHHHhhhhhhHHHHHhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665541 2222233333333333333333334445553 358889999999999999999999999999
Q ss_pred Hh-hhhhHHHHHHHHHHHHHHHHHHhccc
Q 011565 440 ET-WSSYGTFLLYAAVNILGIVFITTVVP 467 (483)
Q Consensus 440 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
.| .+.....+..+...+++.++.....+
T Consensus 359 ~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 359 LDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 55555666666666666555544433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=304.91 Aligned_cols=387 Identities=16% Similarity=0.136 Sum_probs=258.7
Q ss_pred HHHHHHHhhhhhcccccccCcchHHHHhhhcCchhH-HHH-----HHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHH
Q 011565 51 STLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAE-YSV-----FGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFV 124 (483)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 124 (483)
......++.+.+.++...++...|.+.++++.+.++ .++ +.++.++++.+++++.|+++||+|||+++.+++++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445567788889999999999999999999654322 122 25788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhH--------HHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-
Q 011565 125 CIAGWLAIYFSEGALS--------LDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT- 195 (483)
Q Consensus 125 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~- 195 (483)
++++++++++++|+++ ++++|+++|++.|+.++...+++.|++|+++||++.++...+..+|..+++.+..
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 8999999999999999999999999999999999999999888888877764421
Q ss_pred -----------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHH
Q 011565 196 -----------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETL 264 (483)
Q Consensus 196 -----------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (483)
.+|||+.|++.++++++.+++...+||+|++...+++.++..+ +..
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-----------------------~~~ 233 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-----------------------EGL 233 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-----------------------ccc
Confidence 4689999999887777666667788999986543222111000 000
Q ss_pred ccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHH-HcCCCCc---hHHHHHHHHHHHHHHHHHHHHh
Q 011565 265 ERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQ-TAGLSPS---TGTISYALLQVVVTFFNIIMID 340 (483)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d 340 (483)
++.++.++++++++. .+........ .+.....++....|.|.+++ ..+.+.. .......++.+++.++.|+++|
T Consensus 234 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 234 QDGPKVSFKEIATKH-WRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred cccccCCHHHHHHHh-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122455555531 1222222111 11112223344456666654 3365542 3334446677788899999999
Q ss_pred hcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHH
Q 011565 341 RAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSL 420 (483)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 420 (483)
|+|||+.+..+.....+....+.... . ......+....++.++..+...+....+..|.+|++.|+++.|+
T Consensus 312 r~grr~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~ 382 (490)
T PRK10642 312 RFGRRPFVILGSVALFVLAIPAFILI--N-------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAA 382 (490)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHH--h-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHH
Confidence 99999987766654333322211110 0 01222222333333333333334455677789999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-h-hhHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 011565 421 TTLVNWFGAWAISYTFNFLETW-S-SYGTFLLYAAVNILGIVFITTVVPETKGR 472 (483)
Q Consensus 421 ~~~~~~~g~~~~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (483)
.+....+++.++|.+.+++.+. + ...++++..+.++++.+. .++.||++++
T Consensus 383 ~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~ 435 (490)
T PRK10642 383 AFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCC
Confidence 7777778888999999988772 2 244444444444444433 3445776443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=293.97 Aligned_cols=364 Identities=17% Similarity=0.135 Sum_probs=261.6
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH
Q 011565 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127 (483)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 127 (483)
+|.....+.+..+..........+.+|.+.+|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34334444444444444444566678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHH
Q 011565 128 GWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLA 203 (483)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f 203 (483)
+++.+++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++ ..|||+.|
T Consensus 87 ~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 166 (390)
T PRK03545 87 SHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF 166 (390)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999888775 56999999
Q ss_pred HHhHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcc
Q 011565 204 LVGVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLH 282 (483)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (483)
++.++++++..+. +..+||+|+. +. .+..+.++.+|++.++
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~-----~~---------------------------------~~~~~~~~~~~~~~~~ 208 (390)
T PRK03545 167 LAIGGGALITLLLLIKLLPLLPSE-----HS---------------------------------GSLKSLPLLFRRPALV 208 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC-----Cc---------------------------------chHHHHHHHHhCcHHH
Confidence 9988777665433 5556665320 00 0011234566777665
Q ss_pred hHHHHHHhhhhhhccchhhhHHhHHHHHH-HcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHH
Q 011565 283 SVTIGVGLMVIQQFGGINAIAFYAANIFQ-TAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLG 358 (483)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 358 (483)
......++......... .+.+.+.+ ..|.+.. ......+++.++++++.+++.||+++|.. ..+..+..++
T Consensus 209 ~~~~~~~~~~~~~~~~~----~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~ 283 (390)
T PRK03545 209 SLYLLTVVVVTAHFTAY----SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVC 283 (390)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHH
Confidence 54443333333222222 23333333 3455543 44455677889999999999999998754 3343333333
Q ss_pred HHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011565 359 CLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNF 438 (483)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 438 (483)
...+... ..+...+....++.+.......+.....+.+..| +.++++.|+.+...++|..+||.+.|+
T Consensus 284 ~~~l~~~-----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~ 351 (390)
T PRK03545 284 LLLLLPA-----------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQ 351 (390)
T ss_pred HHHHHHH-----------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322221 0223333444445555555555555667777766 688999999999999999999999999
Q ss_pred HHh-hhhhHHHHHHHHHHHHHHHHHHhcc
Q 011565 439 LET-WSSYGTFLLYAAVNILGIVFITTVV 466 (483)
Q Consensus 439 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (483)
+.| .+....+...+.+.+++.++.+...
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 352 VSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 998 6666777777777766666655544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=308.03 Aligned_cols=390 Identities=15% Similarity=0.070 Sum_probs=264.8
Q ss_pred hHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHH
Q 011565 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVC 125 (483)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 125 (483)
+..+....+.++..+....+...+++..|.+.+|+|++.++.|++.+++.+++++++++.|+++||+|||+++.++.+++
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 33555666777777777778889999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH-----hhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----c
Q 011565 126 IAGWLAIYF-----SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----V 196 (483)
Q Consensus 126 ~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~ 196 (483)
+++.+..++ +++++.+++.|+++|++.+...|...+++.||+|+++||+++++...+..+|.++++.+.. .
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 887776665 5899999999999999999999999999999999999999999999999999999887754 1
Q ss_pred ---chhHHHHHHhHHHHHHH-HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhh-
Q 011565 197 ---ATWRTLALVGVIPCAVL-LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKAR- 271 (483)
Q Consensus 197 ---~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 271 (483)
.+||..|.+.+++.++. ++.+++.+++|+..... +.++ . .. +. ...+. + ..+.++......
T Consensus 185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~-~~--~~~~~---~-~~~~~~~~~~~~~ 250 (467)
T PRK09556 185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FG-EP--ISEED---K-ETESTDMTKWQIF 250 (467)
T ss_pred hccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---cc-Cc--cchhh---h-ccccccCcHHHHH
Confidence 15999888877766654 44456667776421111 1110 0 00 00 00000 0 000000000111
Q ss_pred hHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHH-HcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 011565 272 LLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQ-TAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPL 347 (483)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 347 (483)
.+..++++.+|...+..++....... ...|.|.+++ ..|.+. +.......++.+++.++.|+++||++||+.
T Consensus 251 ~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~ 326 (467)
T PRK09556 251 VEYVLKNPVIWLLCFANIFLYIVRIG----IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA 326 (467)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 22366777776665555544444333 3444554443 346654 344455677889999999999999999887
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHH
Q 011565 348 LLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWF 427 (483)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 427 (483)
+........++...+... . ..+........+..+....+..........|.+|++.+|++.|+.+...++
T Consensus 327 ~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l 396 (467)
T PRK09556 327 LVACIALALIIFTLGVYQ---H-------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYL 396 (467)
T ss_pred HHHHHHHHHHHHHHHHHH---h-------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 655443333322221111 0 022223333333344333332222235667999999999999999999997
Q ss_pred -HHHHHHHHHHHHHh-------------hhhhHHHHHHHHHHHHHHHHHH
Q 011565 428 -GAWAISYTFNFLET-------------WSSYGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 428 -g~~~~~~~~g~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 463 (483)
|.+++|.+.|++.| .++...+.+..++.+++.+..+
T Consensus 397 ~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 397 FGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 77999999999988 2345556666555555544443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=299.51 Aligned_cols=395 Identities=14% Similarity=0.102 Sum_probs=266.0
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH
Q 011565 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127 (483)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 127 (483)
++.......+..+...++...+++.+|.+.+++|+|+++.+++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 33444455566666666677778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHH
Q 011565 128 GWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLA 203 (483)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f 203 (483)
+.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+.+ ..+||+.|
T Consensus 101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 180 (434)
T PRK11663 101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM 180 (434)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887665 56999999
Q ss_pred HHhHHHHHHH-HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhh-hH-HhhhcCC
Q 011565 204 LVGVIPCAVL-LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKAR-LL-DLFQKRY 280 (483)
Q Consensus 204 ~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 280 (483)
++.+++.++. ++.++++||+|++...+...++.++ . .+. .++ .+.++.+..+ ++ ..++++.
T Consensus 181 ~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------~---~~~---~~~--~~~~~~~~~~~~~~~~~~~~~ 244 (434)
T PRK11663 181 MIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD--------A---LEL---AQQ--QEGAGLSRKEILTKYVLLNPY 244 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc--------c---ccc---chh--ccccCCChhhhHHHHHhcChH
Confidence 9987776553 4445677887753211110000000 0 000 000 0000001111 11 2445565
Q ss_pred cchHHHHHHhhhhhhccchhhhHHhHHHHHH-HcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcC--Cccchh-hHhH
Q 011565 281 LHSVTIGVGLMVIQQFGGINAIAFYAANIFQ-TAGLSP---STGTISYALLQVVVTFFNIIMIDRAG--RKPLLL-FAAT 353 (483)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~-~~~~ 353 (483)
.+...+...+.... ...+..+.|.+++ ..|.+. +.....+.++.++++++.|+++||+. +|+... ....
T Consensus 245 ~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~ 320 (434)
T PRK11663 245 IWLLSFSYVLVYVV----RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAA 320 (434)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHH
Confidence 55544443333332 2334445555553 346654 34455667888999999999999983 333322 2111
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHH
Q 011565 354 GLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAIS 433 (483)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (483)
...+....+... .. .+...........+++..+..........|.+|++.|+++.|+.++..++|.+++|
T Consensus 321 ~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p 390 (434)
T PRK11663 321 GILLSVGSLWLM---------PF-ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSG 390 (434)
T ss_pred HHHHHHHHHHHc---------cc-ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhc
Confidence 222222111111 00 11222222222233322222223345668999999999999999999999999999
Q ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 011565 434 YTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVPETKGR 472 (483)
Q Consensus 434 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (483)
.+.|++.| .++...+...+++.++.++..+...++++++
T Consensus 391 ~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 391 YPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred ccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999 6666677777777777666665555554444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=291.68 Aligned_cols=371 Identities=21% Similarity=0.188 Sum_probs=272.5
Q ss_pred hhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHH
Q 011565 45 LYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFV 124 (483)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 124 (483)
.++.|....+.++..+.++++....++..|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 34778788888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhH
Q 011565 125 CIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWR 200 (483)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr 200 (483)
.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++. ..+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888764 56899
Q ss_pred HHHHHhHHHHHHHH-HHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcC
Q 011565 201 TLALVGVIPCAVLL-LGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKR 279 (483)
Q Consensus 201 ~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (483)
+.|++.++..++.. +...++||+|++..++++.++.+ ...+..++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~ 217 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA--------------------------------PVLRALFGEG 217 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh--------------------------------hhHHHHhhhh
Confidence 99999776655543 44667898876432211110000 0000111111
Q ss_pred ---CcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhH
Q 011565 280 ---YLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAAT 353 (483)
Q Consensus 280 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 353 (483)
..+.......+... .......+.|.+.++.|.+. +.......++.++++++.|++.||++||+.+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 293 (406)
T PRK11551 218 RATATLLLWISYFFTLI----VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYA 293 (406)
T ss_pred hhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11111111111111 22334445666666667654 445556677888999999999999999988877655
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHH
Q 011565 354 GLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAIS 433 (483)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (483)
...++++.+... .+...+....++.+....+..+...++..|.+|++.|+++.|+.+....+|..++|
T Consensus 294 ~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~ 361 (406)
T PRK11551 294 GILASLAALAAA------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGP 361 (406)
T ss_pred HHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHh
Confidence 555544433321 22233334444555555555677778899999999999999999999999999999
Q ss_pred HHHHHHHhh-hhhHH-HHHHHHHHHHHHHHHH
Q 011565 434 YTFNFLETW-SSYGT-FLLYAAVNILGIVFIT 463 (483)
Q Consensus 434 ~~~g~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 463 (483)
.+.|.+.+. +.+.. +.....+.+++.+..+
T Consensus 362 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 362 LLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred hhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999884 33333 3333333334333333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=293.44 Aligned_cols=372 Identities=17% Similarity=0.131 Sum_probs=245.1
Q ss_pred hHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhc---CchhHHHHHHHHHHHHH---HHHHHhHHHhhhhhchhHHHH
Q 011565 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLS---LSLAEYSVFGSILTFGA---MIGAITSGPIADFIGRKGAMR 119 (483)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~s~~~l~~---~~~~~~~G~l~dr~Grr~~~~ 119 (483)
++++..+....++.+.+.++...++...|.+.++++ .+..+.++..+.+.+++ .++++++|+++||+|||+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~ 97 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 345556666677888889999999999999999985 55665555555554444 499999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhchh--------HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHH
Q 011565 120 VSSFVCIAGWLAIYFSEGAL--------SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFF 191 (483)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~ 191 (483)
.+.++++++++++++++++. .++++|+++|++.|+.++...+++.|++|+++|+++.++.+.+...|..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 5899999999999999999999999999999999999998888888877776
Q ss_pred Hhhc------------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHH
Q 011565 192 IIGT------------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQE 259 (483)
Q Consensus 192 ~l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (483)
.+.. ..|||+.|++.++++++.......+||+|++..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~------------------------------ 227 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR------------------------------ 227 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh------------------------------
Confidence 5421 4699999999888877766666667887642100
Q ss_pred HHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCCch---HHHHHHHHHHHHHHHH
Q 011565 260 YIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSPST---GTISYALLQVVVTFFN 335 (483)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~ 335 (483)
++.+..+++++++++..+...+...+. .....+.+..|.|.++++ .+.+... ......+...++.++.
T Consensus 228 -----~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~ 299 (432)
T PRK10406 228 -----ALKEAGSLKGLWRNRRAFIMVLGFTAA---GSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLI 299 (432)
T ss_pred -----hhcccccHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112355666665444333322221 111223344556665543 4665433 3334455667778888
Q ss_pred HHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccch
Q 011565 336 IIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKG 415 (483)
Q Consensus 336 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (483)
|+++||++||+.+.....+..+....+... .. .............+..+..+...+....+.+|.+|++.|+
T Consensus 300 G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~ 371 (432)
T PRK10406 300 GALSDKIGRRTSMLCFGSLAALFTVPILSA--LQ------NVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRA 371 (432)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHH--HH------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccc
Confidence 999999999987765554433222211111 00 0011111111111111222222344567889999999999
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHH
Q 011565 416 VGGSLTTLVNWF-GAWAISYTFNFLETWSSYGT-FLLYAAVNILGIVFIT 463 (483)
Q Consensus 416 ~~~g~~~~~~~~-g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 463 (483)
++.|+.+..+++ .+...|.+.+.+.+.+.+.. ++..+++.+++.+..+
T Consensus 372 t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 372 LGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999988665 34457787776644443333 3334444444444333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=293.60 Aligned_cols=383 Identities=14% Similarity=0.097 Sum_probs=257.7
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH
Q 011565 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127 (483)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 127 (483)
+|....++++..+.+.++....+...|.+.+|+|++.++.|++.+++.+++++++++.|+++||+|||+++..+++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 45556666667777888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----------cc
Q 011565 128 GWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----------VA 197 (483)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----------~~ 197 (483)
+++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++ ..
T Consensus 86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (412)
T TIGR02332 86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALK 165 (412)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999998887765 24
Q ss_pred hhHHHHHHhHHHHHHH-HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhh
Q 011565 198 TWRTLALVGVIPCAVL-LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLF 276 (483)
Q Consensus 198 ~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (483)
|||+.|++.+++.++. .+.++++||+|+.... -+.++.+...+..+....+.++. + +..++.+...+..+++++
T Consensus 166 gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 240 (412)
T TIGR02332 166 GWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQP-E---GAFAHAAMPQRSMLREIF 240 (412)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhcccccccc-c---cccccccccHHHHHHHhc
Confidence 8999999988777664 4557788998852100 01111111111111110000000 0 000000001112233333
Q ss_pred hcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHc--CCC---CchHHHHHHHHHHHHHHHHHHHHhhcCCccch-hh
Q 011565 277 QKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTA--GLS---PSTGTISYALLQVVVTFFNIIMIDRAGRKPLL-LF 350 (483)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~ 350 (483)
++.++...+..++ .......+..|+|.++++. +.+ .+.......++.++++++.|+++||+++|+.. ..
T Consensus 241 -~~~~~~~~~~~~~----~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~ 315 (412)
T TIGR02332 241 -TPAIMLYTLAYFC----LTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTAL 315 (412)
T ss_pred -ChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHH
Confidence 3333333332222 2223444556677776653 333 24455666888899999999999999977643 33
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHH
Q 011565 351 AATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAW 430 (483)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 430 (483)
......++. ++... ...+...+ ...++.+.+.....+.......|.+|++.|+++.|+.+...++|++
T Consensus 316 ~~~~~~~~~-~~~~~----------~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~ 383 (412)
T TIGR02332 316 PYLFAAAGW-LLASA----------TDHNLIQL-LGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSA 383 (412)
T ss_pred HHHHHHHHH-HHHHh----------cCCHHHHH-HHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhh
Confidence 333333222 11111 00111111 1112222222222333445567789999999999999999999999
Q ss_pred HHHHHHHHHHh-hh-hhHHHHHHH
Q 011565 431 AISYTFNFLET-WS-SYGTFLLYA 452 (483)
Q Consensus 431 ~~~~~~g~~~~-~~-~~~~~~~~~ 452 (483)
++|.+.|.+.| .+ +...+.+.+
T Consensus 384 ~~p~~~g~i~~~~g~~~~~~~~~~ 407 (412)
T TIGR02332 384 LSPFLIGILKDATGSFNSGLWFVA 407 (412)
T ss_pred hhhhhcccccccCCCCchhHHHHH
Confidence 99999999988 33 344444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=281.43 Aligned_cols=348 Identities=16% Similarity=0.057 Sum_probs=243.9
Q ss_pred cccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011565 65 GVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLG 144 (483)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (483)
....+.|.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++|++.++++
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34457889999999999999999999999999999999999999999999998776655554544333334799999999
Q ss_pred HHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHH-HHHHhhc
Q 011565 145 RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAV-LLLGLFL 219 (483)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~-~~~~~~~ 219 (483)
|+++|++.+. .+.....++|++|+++|++++++...+..+|..+++.++. ..|||+.|++.++++++ .++.+++
T Consensus 86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 5566667799999999999999999999999998887766 56999999997776665 4455778
Q ss_pred CCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccch
Q 011565 220 IPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGI 299 (483)
Q Consensus 220 ~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (483)
+||+|++.. +.. +.+ + ...+++++++++..|...+..++.....+
T Consensus 165 lp~~p~~~~---~~~----------------~~~-----~--------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--- 209 (368)
T TIGR00903 165 LPALPFQAA---EGF----------------GFK-----D--------AVKEFGALAGRKDLWIIGAILGFGVALFD--- 209 (368)
T ss_pred cCCCCCCCC---CCc----------------chH-----H--------HHHHHHHHHcChhHHHHHHHHHHHHHHHH---
Confidence 899875311 000 000 0 01235678888888776666665555544
Q ss_pred hhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCcc---chhh-HhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 300 NAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKP---LLLF-AATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
.+..|+|.++++.+.+.. ......+..+.+.+..++++||..||+ .... .....++.+..+...
T Consensus 210 -~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~---------- 277 (368)
T TIGR00903 210 -NLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE---------- 277 (368)
T ss_pred -HHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 344566666655565542 344445555566666788888876542 2221 222222222222211
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVN 455 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 455 (483)
.+.........+.+++.....+..+++.+|.+|++.|+++.|+.+..+++|+..+|.+.+.+.. +....|.++++..
T Consensus 278 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~ 354 (368)
T TIGR00903 278 --LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILI 354 (368)
T ss_pred --cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 1122223333334444455556677899999999999999999999999999999999887774 4455666777766
Q ss_pred HHHHHHHH
Q 011565 456 ILGIVFIT 463 (483)
Q Consensus 456 ~~~~~~~~ 463 (483)
+++.+...
T Consensus 355 ~i~~~~~~ 362 (368)
T TIGR00903 355 TIAFAIAL 362 (368)
T ss_pred HHHHHHHH
Confidence 66666543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=288.45 Aligned_cols=361 Identities=19% Similarity=0.142 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHH
Q 011565 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126 (483)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 126 (483)
.++.......++.+..+++.....+..|.+++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 33444556667777788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHH
Q 011565 127 AGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTL 202 (483)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~ 202 (483)
++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+.. ..+||+.
T Consensus 95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~ 174 (426)
T PRK12307 95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA 174 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998887654 5699999
Q ss_pred HHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcc
Q 011565 203 ALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLH 282 (483)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (483)
|++.++..++........||++++..++.+. +++..+ ...+..+.+++++++++.++
T Consensus 175 f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 231 (426)
T PRK12307 175 FFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKHSQ-----------SAWSVFSLSMKGLFNRAQFP 231 (426)
T ss_pred HHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cccccc-----------cchhhhhHHHHHHHhhchHH
Confidence 9986554444333334456665432111000 000000 00001123456777777665
Q ss_pred hHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHH
Q 011565 283 SVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGC 359 (483)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (483)
.......... ..+.....+..+.+.+.+..+.+.. .......++.++++++.+++.||++||+.+..+.++..+..
T Consensus 232 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 310 (426)
T PRK12307 232 LTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFI 310 (426)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4443322222 2222222234455666665666643 33455567888999999999999999998877766655544
Q ss_pred HHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 360 LLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
+.+... ...............+....+..+....++.|.+|++.|+++.|+.+....+|+.++|.+.|++
T Consensus 311 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 311 FPLFRI----------PQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHHHHH----------ccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 333321 0011111111122222222233445567788999999999999999999999999999999999
Q ss_pred Hh
Q 011565 440 ET 441 (483)
Q Consensus 440 ~~ 441 (483)
.+
T Consensus 381 ~~ 382 (426)
T PRK12307 381 GI 382 (426)
T ss_pred HH
Confidence 88
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=285.62 Aligned_cols=377 Identities=14% Similarity=0.067 Sum_probs=250.5
Q ss_pred HHHHHHHHhhhhhcccccccCcchHH-HHhhh--cCchhHHHHHH-----HHHHHHHHHHHHhHHHhhhhhchhHHHHHH
Q 011565 50 LSTLVAVSGSYSFGTGVGYSSPTQNA-IREDL--SLSLAEYSVFG-----SILTFGAMIGAITSGPIADFIGRKGAMRVS 121 (483)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~ 121 (483)
.......++.+.+.++...++...|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++..+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~ 100 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 35566667788888888888877764 55565 67766 45554 345567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhchh--------HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHh
Q 011565 122 SFVCIAGWLAIYFSEGAL--------SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFII 193 (483)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l 193 (483)
.+++++++++++++++++ .++++|+++|++.|+.++....++.|++|+++|++..+....+..+|.+++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~ 180 (438)
T PRK09952 101 VWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGL 180 (438)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 588999999999999999999999999999999999999999999999888654
Q ss_pred hc------------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 011565 194 GT------------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYI 261 (483)
Q Consensus 194 ~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (483)
.. .++||+.|++.+++.++........||+|++..++++.++.
T Consensus 181 ~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~------------------------- 235 (438)
T PRK09952 181 VSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA------------------------- 235 (438)
T ss_pred HHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-------------------------
Confidence 32 46999999998877666555566778887653322111000
Q ss_pred HHHccCchhhhHHhhhcCCcchHHHH-HHhhhhhhccchhhhHHhHHHHHH-HcCCCCc---hHHHHHHHHHHHHHHHHH
Q 011565 262 ETLERLPKARLLDLFQKRYLHSVTIG-VGLMVIQQFGGINAIAFYAANIFQ-TAGLSPS---TGTISYALLQVVVTFFNI 336 (483)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g 336 (483)
+ .+....+.+++++..+..... .....+. .+....|.+.+.+ ..+.+.. ......++..+++.++.|
T Consensus 236 ---~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g 307 (438)
T PRK09952 236 ---K-KRIPVIEALLRHPGAFLKIIALRLCELLT----MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFA 307 (438)
T ss_pred ---c-ccCCHHHHHHHchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011123344433332221 1111121 2223334444432 3355543 233445666778888999
Q ss_pred HHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchh
Q 011565 337 IMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGV 416 (483)
Q Consensus 337 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 416 (483)
+++||++||+.+..+.++..++...+.... . .......+....++.++..+...+..+++..|.+|++.|++
T Consensus 308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~t 379 (438)
T PRK09952 308 WLADRFGRRRVYITGALIGTLSAFPFFMAL--E------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYS 379 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHH--H------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHH
Confidence 999999999988776655444333222211 0 01122222223333344444445667788999999999999
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHh-h-h-hhHHHHHHHHHHHHHHHHHHhcccCC
Q 011565 417 GGSLTTLVN-WFGAWAISYTFNFLET-W-S-SYGTFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 417 ~~g~~~~~~-~~g~~~~~~~~g~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
+.|+.+... .+|+.++|.+.+++.+ . + +...+...+++.+++.+.. +..+++
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 999976664 4899999999999987 2 2 3344444555555544443 445553
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=282.07 Aligned_cols=369 Identities=12% Similarity=0.069 Sum_probs=259.0
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH
Q 011565 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127 (483)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 127 (483)
.|.+....+.+.+... .....++.+|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..++++
T Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~ 86 (393)
T PRK09705 8 NFMLLVLVLIGLNMRP-LLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV 86 (393)
T ss_pred HHHHHHHHHHHHHcch-hhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence 4554554444444433 336678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----c-chhHHH
Q 011565 128 GWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----V-ATWRTL 202 (483)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~-~~wr~~ 202 (483)
+.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+...|..+++.++. + .+||+.
T Consensus 87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999997 78999999998777677666666554 3 389998
Q ss_pred HHHhHHHHHHHHHHhhcC-CCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCc
Q 011565 203 ALVGVIPCAVLLLGLFLI-PESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYL 281 (483)
Q Consensus 203 f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (483)
+.+.++..++..+.++.. ++.|+ ++ + ++ +...++.++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~------------------------------~~--~~~~~~~l~~~~~ 207 (393)
T PRK09705 166 LAWWALPAVVALFAWWWQSAREVA-----SS-H------------------------------KT--TTTPVRVVFTPRA 207 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc-----cc-c------------------------------CC--CcCCcccccCHhH
Confidence 877655554443333322 22121 00 0 00 0011233444444
Q ss_pred chHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHH
Q 011565 282 HSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLG 358 (483)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 358 (483)
+...+...+.... +.....+.+.++++.|.+. +....+++++.++++++.+++.||++||+....+..+..++
T Consensus 208 ~~l~~~~~~~~~~----~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 208 WTLGVYFGLINGG----YASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVG 283 (393)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4444333333333 2334445555555556654 45566778889999999999999999998888877666666
Q ss_pred HHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC-CccchhhhHHHHHHHHHHHHHHHHHHH
Q 011565 359 CLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP-INIKGVGGSLTTLVNWFGAWAISYTFN 437 (483)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~~~g 437 (483)
..++... + .+...+. .++.+.+.+...+.......+..+ ++.+++..|+.+...+++..++|.+.|
T Consensus 284 ~~~~~~~---------~--~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G 350 (393)
T PRK09705 284 FCGFIWL---------P--LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSG 350 (393)
T ss_pred HHHHHHc---------c--chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544322 0 1111111 223344444555655555556664 678899999999999999999999999
Q ss_pred HHHh-hh-hhHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 011565 438 FLET-WS-SYGTFLLYAAVNILGIVFITTVVPETKGRT 473 (483)
Q Consensus 438 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (483)
++.| .+ +...+.+.++++++..++.+.+.+|++++.
T Consensus 351 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 351 VLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 9999 44 344455556666666566566677766553
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=258.47 Aligned_cols=413 Identities=19% Similarity=0.183 Sum_probs=308.8
Q ss_pred hHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHH
Q 011565 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVC 125 (483)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 125 (483)
+.+|........+.....+-.-...-..|.+.+.+|.+..|..++......+..+++..+|.++|++|||+.+.+..+..
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 44555555556665555544444455566688899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHH
Q 011565 126 IAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRT 201 (483)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~ 201 (483)
++...+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|+..+-.. ..+.+|.++...+.. .+||||
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~ 231 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY 231 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999998 899999999999999998766555 777888777766554 779999
Q ss_pred HHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccc----------hHHHH----HHHHHHHHHccC
Q 011565 202 LALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADI----------SQEAT----EIQEYIETLERL 267 (483)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~----~~~~~~~~~~~~ 267 (483)
.......+..+.....+++||+||+...+++++++.+.++++...|... .++.+ +..+......+.
T Consensus 232 ~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke 311 (528)
T KOG0253|consen 232 LLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKE 311 (528)
T ss_pred HHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccc
Confidence 9999888777788888999999999999999999999988886543321 01111 111111112223
Q ss_pred chhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcC---C-----------------CC---chHHHHH
Q 011565 268 PKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAG---L-----------------SP---STGTISY 324 (483)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------~~---~~~~~~~ 324 (483)
...+..+++ .|.+++..+.....++.+...++.........++... . +. ..-..+.
T Consensus 312 ~rg~~~nLl-sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllit 390 (528)
T KOG0253|consen 312 VRGGTTNLL-SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLIT 390 (528)
T ss_pred cccchHhhc-ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHH
Confidence 344455555 3444444555555555544444555555444443211 0 00 1224556
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhh
Q 011565 325 ALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVL 404 (483)
Q Consensus 325 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (483)
.+..+.|.++.+++.||+|||+++...+++..+..+++... .......+..+..-.+..+.+.+.+.|
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c------------~~rn~~tvllf~arafisg~fqvaYvY 458 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC------------KTRNAYTVLLFTARAFISGAFQVAYVY 458 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh------------cCcchhHHHHHHHHHHHhchheEEEEe
Confidence 78889999999999999999999998888877776666554 122223333334445555666778899
Q ss_pred ccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCH
Q 011565 405 MSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTL 474 (483)
Q Consensus 405 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (483)
..|++|+..|+++.|.....+.+|+++.|.+. ...+.....+..+++++++++++...++-.|+|+|..
T Consensus 459 tPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 459 TPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred cCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999999999999999999999999999998 5556666778889999999998888887789998753
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=295.49 Aligned_cols=380 Identities=16% Similarity=0.052 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHH
Q 011565 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126 (483)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 126 (483)
++|..+..++++.+....+.+.++..+|.+.+|+|.+.++.+|+.+.|.+++.++++++|+++||+|||++++++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhccc-CccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHH
Q 011565 127 AGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIA-PKELRGALTSANQLLIVIGASTFFIIGT----VATWRT 201 (483)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~ 201 (483)
++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|++++++......+|..+||.+++ ..+|||
T Consensus 83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~ 162 (495)
T PRK14995 83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS 162 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 99999999999999999999999999998888888887766 6789999999999999999999888876 569999
Q ss_pred HHHHhHHHHHHHH-HHhhcCCCChhHHHhhCCHHHHHHHH---------HHHhcCcccc-hH-HHHH--------HH-HH
Q 011565 202 LALVGVIPCAVLL-LGLFLIPESPRWLAKIGKHEEFEAAL---------QKLRGKDADI-SQ-EATE--------IQ-EY 260 (483)
Q Consensus 202 ~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~-~~~~--------~~-~~ 260 (483)
.|++...++++.+ +.++++||+++.. +++.+...... ..+....... .. .... .. -.
T Consensus 163 ~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~ 240 (495)
T PRK14995 163 VFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI 240 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence 9999887776644 4466778765321 11111111100 0000000000 00 0000 00 00
Q ss_pred HHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCC---chHHHHHHHHHHHHHHHHH
Q 011565 261 IETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSP---STGTISYALLQVVVTFFNI 336 (483)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g 336 (483)
..+.+..++.-..+++|++.+....+..++...... ...++.+.+++. .|.++ +....+..++..++.++.|
T Consensus 241 ~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g 316 (495)
T PRK14995 241 RTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLV----GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAG 316 (495)
T ss_pred HHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222223467888776655554444444332 233344444432 35554 5566667788889999999
Q ss_pred HHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchh
Q 011565 337 IMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGV 416 (483)
Q Consensus 337 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 416 (483)
++.||+++|+.+..+..+..++..++... ....+.+......++.+.+.+...+.....+.+..|+++++.
T Consensus 317 ~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~ 387 (495)
T PRK14995 317 ILVSRLGLRLVATGGMALSALSFYGLAMT---------DFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAA 387 (495)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHh---------cCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcch
Confidence 99999999988877777776666554432 111223334445556666666666666777788899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 417 GGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 417 ~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
+.++.++..++|..+|+.+.|.+.+
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=285.75 Aligned_cols=375 Identities=18% Similarity=0.140 Sum_probs=262.3
Q ss_pred chhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHH
Q 011565 44 SLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSF 123 (483)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 123 (483)
.++++|.......++.+...++.....+..|.+++++|+++++.+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34556666777788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cch-
Q 011565 124 VCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VAT- 198 (483)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~- 198 (483)
+.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+..+|..+++.++. ..+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999888765 334
Q ss_pred -hHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhh
Q 011565 199 -WRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQ 277 (483)
Q Consensus 199 -wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (483)
||+.|++.++..++.++....+||++++..++++.++..+..++..+.+.... ...+......++.
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-- 232 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA-----------NIVMTLAAAMVQS-- 232 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh-----------hhhhhhhHHhhhh--
Confidence 99999987777766666667788887544322221111111111110000000 0000000011111
Q ss_pred cCCcchHHHHHHhhhhhhccchhhhHHhHHHHHH-HcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhH
Q 011565 278 KRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQ-TAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAAT 353 (483)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 353 (483)
.+..+......................+.+.+.+ ..+.+. +.......++.++++++.+++.||++||+.+..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~ 312 (405)
T TIGR00891 233 AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLL 312 (405)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHH
Confidence 1111111111111111111111122223333332 345554 344556677888999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHH
Q 011565 354 GLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAIS 433 (483)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (483)
...+........ ..+...+.....+.+....+..+....++.|.+|++.|+++.|+.+...++|..++|
T Consensus 313 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~ 381 (405)
T TIGR00891 313 AGQLLIIPVFAI-----------GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAP 381 (405)
T ss_pred HHHHHHHHHHHh-----------CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHH
Confidence 443322222111 022233333334445555555666778889999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 011565 434 YTFNFLETW 442 (483)
Q Consensus 434 ~~~g~~~~~ 442 (483)
.+.|.+.|.
T Consensus 382 ~~~g~l~~~ 390 (405)
T TIGR00891 382 IIGALLAQR 390 (405)
T ss_pred HHHHHHHHh
Confidence 999999993
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=337.06 Aligned_cols=421 Identities=34% Similarity=0.557 Sum_probs=321.4
Q ss_pred HHhhhhhcccccccCcchHHHH--hhhcC---------chhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHH
Q 011565 56 VSGSYSFGTGVGYSSPTQNAIR--EDLSL---------SLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFV 124 (483)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~---------s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 124 (483)
.++.+..+++....+...+... .+++. ++.+.+++.++..+|..+|+++.|+++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3444666666666655554333 22222 223578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----c-
Q 011565 125 CIAGWLAIYFSE---GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----V- 196 (483)
Q Consensus 125 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~- 196 (483)
..++.++.++++ |++.+.++|+++|++.|+..+....++.|..|+++|++..++.+.+..+|..++..++. .
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 99999999999999999999999999999999999999999999999999888877654 2
Q ss_pred --chhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHH
Q 011565 197 --ATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLD 274 (483)
Q Consensus 197 --~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (483)
.+||+.+.+.++++++..+..+++||||+|+..+++.+++++.++++++.+...++..+..++..+ .++.+..+++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 243 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKE--SQESKASWRD 243 (451)
T ss_pred ccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccc--ccccceeeee
Confidence 249999999999998877788899999999999999999999988865553222222111111111 1111255777
Q ss_pred hhhcCC-cchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHh
Q 011565 275 LFQKRY-LHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS-TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAA 352 (483)
Q Consensus 275 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 352 (483)
+++++. .++......+..+..........+|.+.+++..+.+.. .......+..+++.+++.++.||+|||+.+..+.
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~ 323 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL 323 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777754 44555555555555566666677788888877777665 4555666777788888889999999999999888
Q ss_pred HHHHHHHHHHH-HHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHH
Q 011565 353 TGLLLGCLLLA-AAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWA 431 (483)
Q Consensus 353 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 431 (483)
..+.++.+.+. ........ +.......+....+....+..+..+..+.+..|.+|++.|+++.|+....+++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i 400 (451)
T PF00083_consen 324 LLMAICSLILGIIFFLGVSS---SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI 400 (451)
T ss_pred cccccccccccccccccccc---ccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 88777776665 11100000 001123333344444445555677888899999999999999999999999999999
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHhh
Q 011565 432 ISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQATM 481 (483)
Q Consensus 432 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (483)
++.+...+.+ .+....+.++++++++..++.++++||+|+++.+|++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 401 IPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 9999888877 3447778888888888888889999999999999999876
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=270.39 Aligned_cols=369 Identities=12% Similarity=0.037 Sum_probs=260.4
Q ss_pred HHHHHHhhhhhcccccccCcchHHHHh-hhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHH
Q 011565 52 TLVAVSGSYSFGTGVGYSSPTQNAIRE-DLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWL 130 (483)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~ 130 (483)
+.+..++.+.........+|+.+.+.+ |+|+|++|.+++.+++.+++.+++++.|++.||+|.|+++.++.+++++.++
T Consensus 36 l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~ 115 (462)
T PRK15034 36 LWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCV 115 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 334444445555566777888888776 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHH----HHHhhc------
Q 011565 131 AIYFS-----EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGAST----FFIIGT------ 195 (483)
Q Consensus 131 ~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~----~~~l~~------ 195 (483)
+.+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++++.....++|..+ +|.+..
T Consensus 116 ~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~ 194 (462)
T PRK15034 116 WLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAF 194 (462)
T ss_pred HHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99987 8999999999999998 6788999999999999999999999996555556544 443221
Q ss_pred ------------cchhHHHHHHhHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 011565 196 ------------VATWRTLALVGVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIE 262 (483)
Q Consensus 196 ------------~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (483)
..+||..+++.+++.++..++ +++.++.|+
T Consensus 195 ~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------------------------------- 237 (462)
T PRK15034 195 LGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------------------------------------- 237 (462)
T ss_pred hccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-------------------------------------
Confidence 234888888877776665444 555554331
Q ss_pred HHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhc
Q 011565 263 TLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRA 342 (483)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 342 (483)
++....+.++.+|++..|...+.+++.+..+.+..+++|+|....+. ..+......+..+...+.++++|+++||+
T Consensus 238 --~~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi 313 (462)
T PRK15034 238 --SRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF 313 (462)
T ss_pred --cccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 11123345668889988887777766655544444455555433221 11111223334667888899999999999
Q ss_pred CCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCC-----------
Q 011565 343 GRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPI----------- 411 (483)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------- 411 (483)
|+++++.++.+.+.+....+.... .. ....+.......++......+..+...+-++.+.+|+
T Consensus 314 G~~~vl~~~~i~~~i~~~~~~l~l--p~----~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 314 GGVRVTLINFIFMAIFSALLFLTL--PG----TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHh--cc----ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 999999888877766654433321 00 0012233333333333344444445556667777763
Q ss_pred ----------ccchhhhHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHhcccC
Q 011565 412 ----------NIKGVGGSLTTLVNWFGAWAISYTFNFLET--WSSYGTFLLYAAVNILGIVFITTVVPE 468 (483)
Q Consensus 412 ----------~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (483)
++.|.+.|+....+.+|+++.|.+.|...+ .++...+..+.+..+++.++.+++..+
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 156899999999999999999999998887 334555677777777777777665543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=282.56 Aligned_cols=391 Identities=12% Similarity=0.104 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHH
Q 011565 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126 (483)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 126 (483)
++|..+...++.......+.....+..|.+.++ |+++++.+++.+++.+++++++++.|+++||+|||++++.+.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 344444444444454454544456677888888 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHH-HHHHhhc----cc
Q 011565 127 AGWLAIYFSE----GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGAS-TFFIIGT----VA 197 (483)
Q Consensus 127 ~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~-~~~~l~~----~~ 197 (483)
++.+.+++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++.+.+..+|.. .++.++. ..
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 184 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN 184 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 9999888764 7888899999999999988888888899999999999999999999988864 4554322 34
Q ss_pred hhHHHHHHhHHHHHH-HHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhh-HHh
Q 011565 198 TWRTLALVGVIPCAV-LLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARL-LDL 275 (483)
Q Consensus 198 ~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 275 (483)
+||+.|++.+++.++ .++.++++||+|+....+ +.++.++ +... +. ++ .+.++...+..+ ..+
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~---~~~~-------~~---~~-~~~~~~~~~~~~~~~~ 249 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN---DYPD-------DY---NE-KHEQELTAKQIFMQYV 249 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh---cccc-------cc---cc-ccCCCccHHHHHHHHH
Confidence 899999998777666 445577788887532111 1111000 0000 00 00 000000011111 235
Q ss_pred hhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCC---chHHHHHHHHHHHHHHHHHHHHhhcC--Cccchh
Q 011565 276 FQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSP---STGTISYALLQVVVTFFNIIMIDRAG--RKPLLL 349 (483)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~ 349 (483)
+|++.+|...+...+.....+ ....|.|.++++ .+.+. +....+..++.+++.++.|+++||++ ||+...
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~----~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~ 325 (452)
T PRK11273 250 LPNKLLWYIAIANVFVYLLRY----GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 325 (452)
T ss_pred HcChHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence 667766665555555444333 334455555544 35553 34445567788889999999999984 443322
Q ss_pred h-HhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHH
Q 011565 350 F-AATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFG 428 (483)
Q Consensus 350 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 428 (483)
. ...+..++...+... ...+...........+....+.......+..|.+|++.+|++.|+.+...++|
T Consensus 326 ~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 395 (452)
T PRK11273 326 VFFMTLVTIATIVYWLN----------PAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 395 (452)
T ss_pred HHHHHHHHHHHHHHHHh----------cccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHH
Confidence 1 112222222222111 01122222222233333222222233356679999999999999999999998
Q ss_pred HHH-HHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhccc
Q 011565 429 AWA-ISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVP 467 (483)
Q Consensus 429 ~~~-~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
+.+ +|.+.|.+.| .++...+.+.+++++++.+....+.+
T Consensus 396 ~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 396 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 765 7999999988 56666777777766666555554443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=275.29 Aligned_cols=356 Identities=16% Similarity=0.061 Sum_probs=259.5
Q ss_pred chhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHH
Q 011565 44 SLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSF 123 (483)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 123 (483)
.+++.++..+.+.+..+...++...+.|.+|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 86 (406)
T PRK15402 7 LGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA 86 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 34677888888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchh
Q 011565 124 VCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATW 199 (483)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~w 199 (483)
+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|++..++......+|..++|.+++ ..+|
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w 166 (406)
T PRK15402 87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW 166 (406)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 999999999999999999999999999999888889999999999999999888887777777777776654 5699
Q ss_pred HHHHHHhHHHHHHHHH-HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhc
Q 011565 200 RTLALVGVIPCAVLLL-GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQK 278 (483)
Q Consensus 200 r~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (483)
|+.|++.++..++..+ .++..||+++.. ++..+ .++...++++++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------------------------~~~~~~~~~~~~~~ 214 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLS-----------------------------LKELGRDYKLVLKN 214 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc-----------------------------HHHHHHHHHHHHcC
Confidence 9999997777666544 355677764310 00000 00012234566777
Q ss_pred CCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHH
Q 011565 279 RYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGL 355 (483)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 355 (483)
+.++...+...+............+.+.. +..+.++.. ......++.+++.++.+++.||+++|+.+..+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 291 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILI---SGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM 291 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 76665544444333322221222233322 234555432 333445677889999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHH
Q 011565 356 LLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYT 435 (483)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 435 (483)
.++..++...... ...+..+.....++.+.+.+...+......... +++++|++.++.+....+|..+|+.+
T Consensus 292 ~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~ 363 (406)
T PRK15402 292 VAGLLLAALATVI-------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIEL 363 (406)
T ss_pred HHHHHHHHHHHHc-------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 6666665543111 012233344444445555444444444444333 45899999999999999999999999
Q ss_pred HHHHHhh
Q 011565 436 FNFLETW 442 (483)
Q Consensus 436 ~g~~~~~ 442 (483)
.+.+.+.
T Consensus 364 ~~~l~~~ 370 (406)
T PRK15402 364 SKHAYLG 370 (406)
T ss_pred HHhcccC
Confidence 9999884
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=279.97 Aligned_cols=379 Identities=20% Similarity=0.162 Sum_probs=261.5
Q ss_pred hcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHH
Q 011565 62 FGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSL 141 (483)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (483)
..++...++...|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (399)
T TIGR00893 6 NYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL 85 (399)
T ss_pred HHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence 33455667777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH-
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLG- 216 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~- 216 (483)
++.|+++|++.+...+...+++.|++|+++|++++++......+|..+++.+++ ..+||+.|++.++..++..+.
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLW 165 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988776 468999999987777665444
Q ss_pred hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhc
Q 011565 217 LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQF 296 (483)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (483)
+++.||+|+.... .++++......+...+ ...++.++..+...++.++++..+...+..++......
T Consensus 166 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (399)
T TIGR00893 166 LKFIPDPPQKAKW-LTEEEKYIVVGGLLAE------------QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLG 232 (399)
T ss_pred hheecCCCCcccc-CCHHHHhhcchhhccc------------cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHH
Confidence 5566766532110 0111100000000000 00011122233456677777766655555555444433
Q ss_pred cchhhhHHhHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhh-HhHHHHHHHHHHHHHHHHHhcC
Q 011565 297 GGINAIAFYAANIFQTAGLS---PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLF-AATGLLLGCLLLAAAFFLKTYG 372 (483)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 372 (483)
....+.+.|..+. .+.+ .+.......+..+++.++.+++.||++||+.... ......++.+..........
T Consensus 233 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 307 (399)
T TIGR00893 233 FFLTWFPTYLVQE---RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN-- 307 (399)
T ss_pred HHHHHHHHHHHHH---hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc--
Confidence 3333333333332 3443 3455666778888999999999999999862211 11111111111111111110
Q ss_pred CcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hh-hhHHHHH
Q 011565 373 LALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WS-SYGTFLL 450 (483)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~-~~~~~~~ 450 (483)
..+...........+....+..+...++..|..|++.|+++.|+.+....+|..++|.+.|.+.+ .+ +...+.+
T Consensus 308 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~ 383 (399)
T TIGR00893 308 ----YVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMV 383 (399)
T ss_pred ----cchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHH
Confidence 01122222333333444444677888999999999999999999999999999999999999988 44 5555666
Q ss_pred HHHHHHHHHHHH
Q 011565 451 YAAVNILGIVFI 462 (483)
Q Consensus 451 ~~~~~~~~~~~~ 462 (483)
.+++.+++.+..
T Consensus 384 ~~~~~~~~~~~~ 395 (399)
T TIGR00893 384 VAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHH
Confidence 666655555443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=275.27 Aligned_cols=347 Identities=20% Similarity=0.194 Sum_probs=228.7
Q ss_pred HHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHH-HHH-----HHHHHHHHHhHHHhhhhhchhHHHHHHHHH
Q 011565 51 STLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFG-SIL-----TFGAMIGAITSGPIADFIGRKGAMRVSSFV 124 (483)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~-s~~-----~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 124 (483)
....++++.+.+.++...+++..|.+.+|++.++.+.+++. +.. .++..+++++.|+++||+|||++++.+.++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 56677788899999999999999999999999888765443 322 222347899999999999999999999999
Q ss_pred HHHHHHHHHHhhchhH--------HHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-
Q 011565 125 CIAGWLAIYFSEGALS--------LDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT- 195 (483)
Q Consensus 125 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~- 195 (483)
+++++++++++++++. ++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.++.
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 6899999999999999999999999999999999999988776666555544433
Q ss_pred -----------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHH
Q 011565 196 -----------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETL 264 (483)
Q Consensus 196 -----------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (483)
..|||+.|++.++..++........||++++..+++
T Consensus 176 l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~--------------------------------- 222 (434)
T PRK15075 176 LNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH--------------------------------- 222 (434)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh---------------------------------
Confidence 468999999865543333333333444332110000
Q ss_pred ccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCCc---hHHHHHHHHHHHHHHHHHHHHh
Q 011565 265 ERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSPS---TGTISYALLQVVVTFFNIIMID 340 (483)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~g~l~d 340 (483)
+.+.+..+++..+++.. .....+..+........+..|.|.++++ .|.+.. ....+..++.+++.++.|+++|
T Consensus 223 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D 299 (434)
T PRK15075 223 RPSMREIFRSLAANWRI---VLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD 299 (434)
T ss_pred ccccccHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111122222211 1111111111222334456667776654 466543 3445567778899999999999
Q ss_pred hcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHH
Q 011565 341 RAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSL 420 (483)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 420 (483)
|++||+.+..+.....+........ .. .............+.+.+.+...+....+..|.+|++.|+++.|+
T Consensus 300 r~g~r~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~ 371 (434)
T PRK15075 300 RIGRRPVLIAFTVLAILTAYPALSW--LV------AAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSL 371 (434)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHH--HH------cCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeH
Confidence 9999988766544332211111100 00 011221222222223333334445556788999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHh
Q 011565 421 TTLVNW-FGAWAISYTFNFLET 441 (483)
Q Consensus 421 ~~~~~~-~g~~~~~~~~g~~~~ 441 (483)
.+.... +++.++|.+.|++.|
T Consensus 372 ~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 372 AYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 766555 458889999999988
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=273.65 Aligned_cols=359 Identities=16% Similarity=0.110 Sum_probs=248.7
Q ss_pred HHhhhhhcccccccCcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Q 011565 56 VSGSYSFGTGVGYSSPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF 134 (483)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (483)
.+..+...++.++..|.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++++++.+.+++
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 100 (399)
T PRK05122 21 VMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLL 100 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 33344455556667888885 67899999999999999999999999999999999999999999999998888776655
Q ss_pred hh--------chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHH
Q 011565 135 SE--------GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTL 202 (483)
Q Consensus 135 ~~--------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~ 202 (483)
+. +++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+|+.+++ ..+||+.
T Consensus 101 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~ 180 (399)
T PRK05122 101 AGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGL 180 (399)
T ss_pred hhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHH
Confidence 32 56788999999999999999999999999999999999999988887777777776655 6789999
Q ss_pred HHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcc
Q 011565 203 ALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLH 282 (483)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (483)
+++.++..++..+.....|++++ ++++ +.++++.+++ .+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------------------------~~~~~~~~~~--~~ 219 (399)
T PRK05122 181 GLLIMLLALLGLLLARPRPAVPP---VKGE------------------------------------RLPFRRVLGR--VW 219 (399)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCC---CCcc------------------------------------chhHHHHHHH--HH
Confidence 88866665544433333333221 0000 0001111111 11
Q ss_pred hHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCC-CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHH
Q 011565 283 SVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLS-PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLL 361 (483)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 361 (483)
.......+..+.. .....+.+.+..+.+.+ .+.......++.+++++..+++.||+++|+.+..+..+..++..+
T Consensus 220 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 295 (399)
T PRK05122 220 PYGMGLALASIGF----GTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLL 295 (399)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 1111111222221 12223333333333433 344455667788899999999999999999888777766666655
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 362 LAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
+... .+.+......++.+.+.+...+.......|..|++.|+++.|+.+....+|..++|.+.|.+.+
T Consensus 296 ~~~~------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 363 (399)
T PRK05122 296 LWLA------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS 363 (399)
T ss_pred HHHh------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442 2233344445555555555556656667788899999999999999999999999999999988
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 011565 442 -WSSYGTFLLYAAVNILGIVFITTVVPETKGR 472 (483)
Q Consensus 442 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (483)
.++...+.+.+++.+++.+...+ .++++++
T Consensus 364 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 394 (399)
T PRK05122 364 WFGYPSIFLAAALAALLGLALTWL-LYRRAPR 394 (399)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHH-hcccccc
Confidence 56666666666666665544443 4444443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=276.05 Aligned_cols=346 Identities=13% Similarity=0.040 Sum_probs=251.3
Q ss_pred ccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 011565 66 VGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGR 145 (483)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (483)
.....+..|.+.+++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH-hhcC
Q 011565 146 LATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLG-LFLI 220 (483)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~-~~~~ 220 (483)
++.|++.+...+.....+.|++| ++|+++.++...+..+|..+++.+.. ..+||+.|++.++..++..+. ++++
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999888888888999986 57999999999999998876554443 458999999988877765444 5555
Q ss_pred CCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchh
Q 011565 221 PESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGIN 300 (483)
Q Consensus 221 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (483)
+|+|+... +++.+ .+.++.+.++.++++..+.......+..+.. .
T Consensus 178 ~~~~~~~~-~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 222 (377)
T TIGR00890 178 GYPPGQLI-KTNIE------------------------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSG----L 222 (377)
T ss_pred ecCchhcc-ccCcc------------------------------cchhhhhHHHHHcCccHHHHHHHHHHHhHHH----H
Confidence 55442100 00000 0001122345666666655444433333222 1
Q ss_pred hhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccc
Q 011565 301 AIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALES 377 (483)
Q Consensus 301 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (483)
....+.+.+.++.+.+. +.......+..++++++.+++.||++||+.+..+.....++.+.+... +.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------~~ 292 (377)
T TIGR00890 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI----------PM 292 (377)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc----------cc
Confidence 22223333444445554 344556677888999999999999999999888877777766655442 11
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Q 011565 378 VPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNI 456 (483)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 456 (483)
...........+.+...+...+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+ .++...+.+.+++.+
T Consensus 293 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~ 372 (377)
T TIGR00890 293 LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFAL 372 (377)
T ss_pred chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 1122222233344444455555666788999999999999999999999999999999999988 555555555555444
Q ss_pred H
Q 011565 457 L 457 (483)
Q Consensus 457 ~ 457 (483)
+
T Consensus 373 ~ 373 (377)
T TIGR00890 373 T 373 (377)
T ss_pred H
Confidence 4
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=266.63 Aligned_cols=351 Identities=14% Similarity=0.102 Sum_probs=245.5
Q ss_pred HHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Q 011565 55 AVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF 134 (483)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (483)
+.+..+..........+.+|.+.+++|+++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 104 (394)
T PRK10213 25 VAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF 104 (394)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333335556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHH
Q 011565 135 SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPC 210 (483)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~ 210 (483)
+++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|.+++ ..+||+.|++.++++
T Consensus 105 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~ 184 (394)
T PRK10213 105 ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG 184 (394)
T ss_pred HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988888888887776 569999999987766
Q ss_pred HHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHH
Q 011565 211 AVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVG 289 (483)
Q Consensus 211 ~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (483)
++..+. ....||+|++ + + +...+.++.+++|..+...+..+
T Consensus 185 ~~~~l~~~~~~p~~~~~----~--~--------------------------------~~~~~~~~~l~~~~~~~~~~~~~ 226 (394)
T PRK10213 185 VLCIFWIIKSLPSLPGE----P--S--------------------------------HQKQNTFRLLQRPGVMAGMIAIF 226 (394)
T ss_pred HHHHHHHHHHCCCCCcc----c--c--------------------------------cchhHHHHHhcCHHHHHHHHHHH
Confidence 654433 4456765320 0 0 00112334566666655444333
Q ss_pred hhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHH
Q 011565 290 LMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAF 366 (483)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (483)
+.....+. ...+..|.+.+..|.+.. ......+++.+++.++.+++.||.+ |+.+..+..+..+..+.+....
T Consensus 227 ~~~~~~~~---~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~ 302 (394)
T PRK10213 227 MSFAGQFA---FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG 302 (394)
T ss_pred HHHHHHHH---HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh
Confidence 33332221 122223444455576653 4445556788899999999999954 4433333333222222222110
Q ss_pred HHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhh
Q 011565 367 FLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSY 445 (483)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~ 445 (483)
.+.+.+....++.+.+.....+...+.+.+..| ++++...++.....++|..+||.+.|++.| .+..
T Consensus 303 -----------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~ 370 (394)
T PRK10213 303 -----------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLT 370 (394)
T ss_pred -----------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 223334444555565555556666667777777 556778888888889999999999999999 5544
Q ss_pred HHHHHHHHHHHHHH
Q 011565 446 GTFLLYAAVNILGI 459 (483)
Q Consensus 446 ~~~~~~~~~~~~~~ 459 (483)
..+...+.+..+..
T Consensus 371 ~~~~~~~~~~~~~~ 384 (394)
T PRK10213 371 SPLMLSGTLMLLTA 384 (394)
T ss_pred hHHHHHHHHHHHHH
Confidence 44555444444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=274.01 Aligned_cols=398 Identities=16% Similarity=0.123 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHH
Q 011565 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126 (483)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 126 (483)
+.+.....+.+..+...++.....+.+|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44455666667777788888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHH
Q 011565 127 AGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTL 202 (483)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~ 202 (483)
++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+.+ ..+||+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998887765 5689999
Q ss_pred HHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHH---HHHHHHccCchhhh-------
Q 011565 203 ALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQ---EYIETLERLPKARL------- 272 (483)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------- 272 (483)
|++.++..++.++....+||++++..++++.++..+..+.....+........... .............+
T Consensus 177 f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (496)
T PRK03893 177 FFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGL 256 (496)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 98866655555555566788765432222111111111100000000000000000 00000000000000
Q ss_pred ------HHh-h-hcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHH-HcCCCC---chHHHHHHHHHHHHHHHHHHHHh
Q 011565 273 ------LDL-F-QKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQ-TAGLSP---STGTISYALLQVVVTFFNIIMID 340 (483)
Q Consensus 273 ------~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d 340 (483)
... . .++..++.........+..+........++|.+++ ..|.+. +.......++.++++++.|++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d 336 (496)
T PRK03893 257 LCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD 336 (496)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 01111121111111111111111223445566653 446664 44556667788899999999999
Q ss_pred hcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHH
Q 011565 341 RAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSL 420 (483)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 420 (483)
|++||+.+..+..+..+..+.+... .....+.......+.++...+..+....++.|.+|++.|++++|+
T Consensus 337 r~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 406 (496)
T PRK03893 337 WLGTRKAYVCSLLISQLLIIPVFAI----------GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGF 406 (496)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhhc----------cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccch
Confidence 9999988777665544443332221 111222222233333333344455666788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHH
Q 011565 421 TTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAV 454 (483)
Q Consensus 421 ~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~ 454 (483)
.+....+|..++|.+.|.+.+ .+....+...+..
T Consensus 407 ~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 407 TYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred hhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 999999999999999999988 5555455444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=278.54 Aligned_cols=359 Identities=14% Similarity=0.130 Sum_probs=228.9
Q ss_pred cccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011565 65 GVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLG 144 (483)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (483)
......|..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++
T Consensus 51 ~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 130 (476)
T PLN00028 51 STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAV 130 (476)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHH----Hhhc---------cchhHHHHHHhHHHHH
Q 011565 145 RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFF----IIGT---------VATWRTLALVGVIPCA 211 (483)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~----~l~~---------~~~wr~~f~~~~~~~~ 211 (483)
|+++|++.+... ....++.|++|+++||+++++......+|..+++ .+.. ..|||+.|++.+++.+
T Consensus 131 r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l 209 (476)
T PLN00028 131 RFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHI 209 (476)
T ss_pred HHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence 999999987654 4566889999999999999998766555555543 3321 1489999999888777
Q ss_pred HHHHHhhcCC-CChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHh
Q 011565 212 VLLLGLFLIP-ESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGL 290 (483)
Q Consensus 212 ~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (483)
+..+.+++++ +.|+ ++.++..+ +. +.++......+++.++++..|...+..++
T Consensus 210 ~~~l~~~~~~~~~p~-----~~~~~~~~-------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (476)
T PLN00028 210 IMGILVLTLGQDLPD-----GNYRELKK-------SG--------------TMPKDSFSKVLRYGVTNYRTWILALTYGY 263 (476)
T ss_pred HHHHHHHHHcCcCCC-----CchhhHHh-------cC--------------ccccccHHHHHHHHHcCchhHHHHHHHHH
Confidence 6555544444 3332 00000000 00 00000112234556677766655444433
Q ss_pred hhhhhccchhhhHHhHHHHHH-HcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccc----hhhHhHHHHHH-HHH
Q 011565 291 MVIQQFGGINAIAFYAANIFQ-TAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPL----LLFAATGLLLG-CLL 361 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~----~~~~~~~~~~~-~~~ 361 (483)
....... ...+.+.++. ..|.+. +....+..++.+++++++|+++||++||+. .........+. ..+
T Consensus 264 ~~~~~~~----~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~ 339 (476)
T PLN00028 264 SFGVELT----MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFC 339 (476)
T ss_pred HHHHHHH----HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Confidence 3332222 2333444433 346664 345556678888999999999999987531 11111111111 111
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 362 LAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
+... ...+.......+++.+.+.....+..+++..+..| +.+|++.|+.+..+++|+.++|.+.+.-..
T Consensus 340 ~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~ 408 (476)
T PLN00028 340 IWLG----------RANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSS 408 (476)
T ss_pred HHhc----------ccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCC
Confidence 1111 00112222222233333332333344555666644 789999999988888888888877652111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhc
Q 011565 442 WSSYGTFLLYAAVNILGIVFITTV 465 (483)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~ 465 (483)
.++...+.+.+++.+++.++.++.
T Consensus 409 ~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 409 YSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred ccHhhHHHHHHHHHHHHHHHHHhe
Confidence 345566767766666665555443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=276.06 Aligned_cols=428 Identities=19% Similarity=0.180 Sum_probs=306.2
Q ss_pred CCCccccccCchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhc
Q 011565 34 GSGKKTGSKDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIG 113 (483)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G 113 (483)
+.++..+.++..+.++......+.............++..+ .+.++.+.....+..+++.+|..+|++++|+++||+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~G 146 (521)
T KOG0255|consen 69 TLDPANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFG 146 (521)
T ss_pred ccCcCCccccccccccccccccccceeEecCCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcc
Confidence 34445555556666665555555655655555566555543 4667778889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHh
Q 011565 114 RKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFII 193 (483)
Q Consensus 114 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l 193 (483)
||++++.++++..++.+..++++|++.+++.|+++|++.++.......++.|++++++|+.+..+ ......++.+++.+
T Consensus 147 Rk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~ 225 (521)
T KOG0255|consen 147 RKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAG 225 (521)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 55555555555554
Q ss_pred hc--cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCc---ccchHHHHHH--HHHHHHHcc
Q 011565 194 GT--VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKD---ADISQEATEI--QEYIETLER 266 (483)
Q Consensus 194 ~~--~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~ 266 (483)
++ .-+||+.+++..++.++.++.+++.||+|+|+..+++.+++.+.+++....+ ....+..... ....+....
T Consensus 226 ~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~ 305 (521)
T KOG0255|consen 226 AAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFT 305 (521)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhcc
Confidence 44 3389999999999998877778888899999999999999999988876543 1111111111 111111122
Q ss_pred CchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 011565 267 LPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKP 346 (483)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 346 (483)
.++..+.++++.+..+...+...+..+.....++.+.... ...|.+........+.....+....+...|+.|||.
T Consensus 306 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~----~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~ 381 (521)
T KOG0255|consen 306 EPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNV----SGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRP 381 (521)
T ss_pred CCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhh----hhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHH
Confidence 2335577888877655555554544432222222222222 223555555556666677788888899999999999
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHH
Q 011565 347 LLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNW 426 (483)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 426 (483)
....+..+..++++...+... ............+..++........+.+..|++|+..|..+.+..+....
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~ 452 (521)
T KOG0255|consen 382 PLFLSLFLAGIGLLLFGWLPD---------DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAAR 452 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 999999888888888877521 11111222222233333333334448899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHH
Q 011565 427 FGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEI 477 (483)
Q Consensus 427 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (483)
+|.+++|.+.-..........+..++....+.+++...++||++++.+.+.
T Consensus 453 ~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t 503 (521)
T KOG0255|consen 453 LGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGT 503 (521)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchh
Confidence 999999998755544222223333566667777777788999988876554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=268.76 Aligned_cols=357 Identities=13% Similarity=0.080 Sum_probs=251.0
Q ss_pred HHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHH
Q 011565 52 TLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLA 131 (483)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 131 (483)
....++..+..+......++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l 88 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAG 88 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33445566666667778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-----cchhHHHHHHh
Q 011565 132 IYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT-----VATWRTLALVG 206 (483)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~-----~~~wr~~f~~~ 206 (483)
++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+ ..+||+.|.+.
T Consensus 89 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~ 168 (394)
T PRK03699 89 LMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACI 168 (394)
T ss_pred HHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888888888777776643 46899999987
Q ss_pred HHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHH
Q 011565 207 VIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTI 286 (483)
Q Consensus 207 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (483)
+++.++..+..++ .+.|+. ++++.+ ++ ++. .++.+ ++..+...+
T Consensus 169 ~~~~~~~~~~~~~-~~~p~~--~~~~~~-----------~~-----------------~~~----~~~~~-~~~~~~~~~ 212 (394)
T PRK03699 169 GLVYVAIFILTLF-SEFPAL--GKHAPK-----------AD-----------------KPV----AKEKW-GIGVLFLAI 212 (394)
T ss_pred HHHHHHHHHHHHh-cCCccc--cccCcc-----------cc-----------------Ccc----ccccC-ChHHHHHHH
Confidence 7776665444332 222210 000000 00 000 00000 122222222
Q ss_pred HHHhhhhhhccchhhhHHhHHHHHH-HcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHH
Q 011565 287 GVGLMVIQQFGGINAIAFYAANIFQ-TAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLL 362 (483)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 362 (483)
..++.... ...+..|.|.+.+ ..+.+. +.....+.++..+++++.++++||+++|+.+.....+..+.+.++
T Consensus 213 ~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 213 AALLYILA----QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 22222222 2234455555553 346654 444555677889999999999999999988876665555443333
Q ss_pred HHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-
Q 011565 363 AAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET- 441 (483)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~- 441 (483)
... .+........+..+....+..+...+...+..| +.++...+......++|..++|.+.|++.+
T Consensus 289 ~~~------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~ 355 (394)
T PRK03699 289 VNT------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH 355 (394)
T ss_pred HHc------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 221 122233334445555555555666666667665 456778899999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 011565 442 WSSYGTFLLYAAVNILGIVF 461 (483)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~ 461 (483)
.+....++..+++.+++.+.
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 356 FGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred hCchhhhhhhHHHHHHHHHH
Confidence 56666666666665555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=267.45 Aligned_cols=354 Identities=14% Similarity=0.083 Sum_probs=241.2
Q ss_pred HHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Q 011565 55 AVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF 134 (483)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (483)
..+..+..........+.+|.+++|+|.+.++.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~ 87 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL 87 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHH
Q 011565 135 SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPC 210 (483)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~ 210 (483)
++|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++ ..+||+.|++.++..
T Consensus 88 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~ 167 (382)
T PRK10091 88 SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFN 167 (382)
T ss_pred hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHH
Confidence 9999999999999999999888888899999999999999999999988888888877655 568999999988776
Q ss_pred HHHHH-HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHH
Q 011565 211 AVLLL-GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVG 289 (483)
Q Consensus 211 ~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (483)
++..+ .++++||.++ +.+.+. +. ..+.++++..+.......
T Consensus 168 ~~~~~~~~~~lp~~~~----~~~~~~---------------------------------~~-~~~~~~~~~~~~~~~~~~ 209 (382)
T PRK10091 168 IAVLASIYFWVPDIRD----EAKGGL---------------------------------RE-QFHFLRSPAPWLIFAATM 209 (382)
T ss_pred HHHHHHHHHhCCCCCc----ccccCH---------------------------------HH-HHHHhcChHHHHHHHHHH
Confidence 66443 4566787532 000000 00 011233443333222222
Q ss_pred hhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHH
Q 011565 290 LMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAF 366 (483)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (483)
+... ....+..+..+...+..|.+.. .......++.++++++.+++.||+++|+.+..+..+..++.+++....
T Consensus 210 ~~~~---~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (382)
T PRK10091 210 FGNA---GVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG 286 (382)
T ss_pred HHHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1111222222223333566653 445566778889999999999999999998888777766665443320
Q ss_pred HHHhcCCcccccchHHHHHHHHHHHHhhcccccc-hhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-h-h
Q 011565 367 FLKTYGLALESVPALTLAGVLVYIGSFSSGMGAT-PWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-W-S 443 (483)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~-~ 443 (483)
..........+..+.+..+..+. ......+..|++.++.+ ..+....+|..+||.+.|++.| . +
T Consensus 287 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~ 353 (382)
T PRK10091 287 -----------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLA 353 (382)
T ss_pred -----------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccC
Confidence 11112222222222222222322 22334444454555544 3467789999999999999998 3 4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 011565 444 SYGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~ 462 (483)
+...+...++++.+.....
T Consensus 354 ~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 354 YNYVALPAALLSFAAMSSL 372 (382)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 4445555444444443333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=273.71 Aligned_cols=372 Identities=17% Similarity=0.108 Sum_probs=259.1
Q ss_pred HHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Q 011565 55 AVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF 134 (483)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (483)
++++.+...++....++.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+..+.+++.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 94 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL 94 (471)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHH
Q 011565 135 SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPC 210 (483)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~ 210 (483)
+++++.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..++|.+++ ..+||+.|++..+..
T Consensus 95 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 95 SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG 174 (471)
T ss_pred hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888888888887765 579999999987776
Q ss_pred HHHHHH-hhcCCCChhHHHhhCCHHHHHHHHH-------H--HhcCcc-cchH-HHHHH---------HHHHHHHccCch
Q 011565 211 AVLLLG-LFLIPESPRWLAKIGKHEEFEAALQ-------K--LRGKDA-DISQ-EATEI---------QEYIETLERLPK 269 (483)
Q Consensus 211 ~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~-------~--~~~~~~-~~~~-~~~~~---------~~~~~~~~~~~~ 269 (483)
++..+. ....|+.+. ++.+.+....... . ..+.+. .... ..... ....++++..++
T Consensus 175 ~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (471)
T PRK10504 175 IIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRA 251 (471)
T ss_pred HHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 664444 445555432 1112222111100 0 011100 0000 00000 000011111112
Q ss_pred hhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 011565 270 ARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKP 346 (483)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 346 (483)
....+++|++.++......++............++|.... .|.++ +....+..++.+++.++.+++.||++||+
T Consensus 252 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~ 328 (471)
T PRK10504 252 LFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG---LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRR 328 (471)
T ss_pred ccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 2123577888777666555555544333333344444332 35554 34445556667777889999999999999
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHH
Q 011565 347 LLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNW 426 (483)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 426 (483)
.+..+..+..+...++... ....+.........+.+.+.+...+.......+..|++.++.+.|+.++...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 399 (471)
T PRK10504 329 VLVATTLGLALVSLLFMLV---------ALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQ 399 (471)
T ss_pred HHHHHHHHHHHHHHHHHhc---------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHH
Confidence 9888877777665555442 1112222222333344444444455666777888999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011565 427 FGAWAISYTFNFLET 441 (483)
Q Consensus 427 ~g~~~~~~~~g~~~~ 441 (483)
+|..+|+.+.|.+.+
T Consensus 400 ~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 400 LSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999877
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=276.71 Aligned_cols=392 Identities=15% Similarity=0.054 Sum_probs=257.6
Q ss_pred hHHHHHHHHHHHhhhhhcccccccCcchHHHHh----------------------hhcCchhHHHHHHHHHHHHHHHHHH
Q 011565 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIRE----------------------DLSLSLAEYSVFGSILTFGAMIGAI 103 (483)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~~~s~~~l~~~~~~~ 103 (483)
+.+|....+++++......+....+...+.+.+ |++++..+.|++.+.+.+++.++++
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~ 94 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI 94 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence 344555555555555555566666666655665 8899999999999999999999999
Q ss_pred hHHHhhhhhchhHHHHHHHHHHHHHHHHHHHh--hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHH
Q 011565 104 TSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS--EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQL 181 (483)
Q Consensus 104 ~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~ 181 (483)
+.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.||+|+++|++++++...
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 174 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS 174 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999887554 5688899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----c-chhHHHHHHhHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHH
Q 011565 182 LIVIGASTFFIIGT----V-ATWRTLALVGVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEAT 255 (483)
Q Consensus 182 ~~~iG~~~~~~l~~----~-~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
+..+|..+++.+.+ . .+||+.|++.++..++..+. +.+.+|+|+...+ .++++.+. ..+..
T Consensus 175 ~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~-i~~~~----------- 241 (465)
T TIGR00894 175 GFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC-ISKFEKKY-INSSL----------- 241 (465)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC-CCHHHHHH-HHhhc-----------
Confidence 99999999888766 4 49999999988887775554 4556666642111 11111100 00000
Q ss_pred HHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCC---chHHHHHHHHHHHH
Q 011565 256 EIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSP---STGTISYALLQVVV 331 (483)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ 331 (483)
..+..+...+.+++++++++..+...+..+..... ...+..|+|.++++ .+.+. +....+..++.+++
T Consensus 242 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~ 313 (465)
T TIGR00894 242 ----QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWL----YTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLC 313 (465)
T ss_pred ----ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHH
Confidence 00000111233577788887766655555444443 34455555555543 35553 45555667888899
Q ss_pred HHHHHHHHhhcCCccchhh---HhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhcccc
Q 011565 332 TFFNIIMIDRAGRKPLLLF---AATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEI 408 (483)
Q Consensus 332 ~~~~g~l~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (483)
.+++|+++||+++|+.... ......++..+......... ....+.......+.+.+.+.....+.......|.
T Consensus 314 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 389 (465)
T TIGR00894 314 SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP----YLSAAFYLTIIILTLANAVSSGPLAGVLINSLDL 389 (465)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH----HcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhc
Confidence 9999999999865432211 11111111111111000000 0011222223333333333333334444555666
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHHHHHHHH
Q 011565 409 FPINIKGVGGSLTTLVNWFGAWAISYTFNFLETW---S-SYGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 409 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~---~-~~~~~~~~~~~~~~~~~~~~ 463 (483)
.| +.+|.+.|+.+..+.+|+.++|.+.|.+.+. + +...+.+.+++.+++.++..
T Consensus 390 ~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 390 AP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred Ch-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 66 4899999999999999999999999988762 2 44555666666666554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=276.50 Aligned_cols=368 Identities=15% Similarity=0.073 Sum_probs=267.2
Q ss_pred cccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH-----hhchh
Q 011565 65 GVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF-----SEGAL 139 (483)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~ 139 (483)
......+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+. .++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (417)
T PRK10489 32 GLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLL 111 (417)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHH
Confidence 4455677788899999999999999999999999999999999999999999999988888877666543 56788
Q ss_pred HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHH
Q 011565 140 SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLL 215 (483)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~ 215 (483)
.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..+|+.+++ ..+|++.|++.++..++..+
T Consensus 112 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T PRK10489 112 AIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLL 191 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999998888888999999999999999999999999999888888776 45899999998777777666
Q ss_pred HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhh
Q 011565 216 GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQ 295 (483)
Q Consensus 216 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (483)
..+.+||+++.. .+.++ . .+.....++..++++..+...+...+... .
T Consensus 192 ~~~~l~~~~~~~---~~~~~-----------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (417)
T PRK10489 192 PLLRLPALPPPP---QPREH-----------------P-----------LRSLLAGFRFLLASPVVGGIALLGGLLTM-A 239 (417)
T ss_pred HHHhCCCCCCCC---ccccc-----------------c-----------hHHHHHHHHHHHcChHHHHHHHHHHHHHH-H
Confidence 666777754310 00000 0 00001223345555554444333322221 1
Q ss_pred ccchhhhHHhHHHHHHH-cCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhc
Q 011565 296 FGGINAIAFYAANIFQT-AGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTY 371 (483)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (483)
.....+.|.+.++ .+.++ +.......++.+++.++.+++.||.++++.+..+..+..++.+.+...
T Consensus 240 ----~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~------ 309 (417)
T PRK10489 240 ----SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM------ 309 (417)
T ss_pred ----HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc------
Confidence 1223344444444 45554 344555677888999999999999777777777666666555444332
Q ss_pred CCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHH
Q 011565 372 GLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLL 450 (483)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~ 450 (483)
.+........++.+.+.+...+...+++.|..|++.||++.|+.+...++|..++|.+.|++.+ .+....+..
T Consensus 310 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~ 383 (417)
T PRK10489 310 ------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASA 383 (417)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHH
Confidence 2233333444444544444445566788999999999999999999999999999999999999 566667777
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCHHHHHHh
Q 011565 451 YAAVNILGIVFITTVVPETKGRTLEEIQAT 480 (483)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (483)
.+++.++..++.....++.|+++++|+|++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 384 SGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCC
Confidence 777777777777777788888888887765
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=263.29 Aligned_cols=348 Identities=17% Similarity=0.119 Sum_probs=240.8
Q ss_pred hhcccccccCcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH-----
Q 011565 61 SFGTGVGYSSPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF----- 134 (483)
Q Consensus 61 ~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~----- 134 (483)
......++..|.+|. +.+|+|.|.++.|++.+++.+++.++++++|+++||+||||+++.+.+...++.+....
T Consensus 26 ~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 105 (392)
T PRK12382 26 LTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILP 105 (392)
T ss_pred HHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccc
Confidence 334456667788885 67899999999999999999999999999999999999999999998887776543322
Q ss_pred ---hhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhH
Q 011565 135 ---SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGV 207 (483)
Q Consensus 135 ---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~ 207 (483)
.++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++ ..|||+.+.+..
T Consensus 106 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~ 185 (392)
T PRK12382 106 VSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTM 185 (392)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 3578899999999999999888888899999999999999999999888888888877765 568998877655
Q ss_pred HHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHH
Q 011565 208 IPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG 287 (483)
Q Consensus 208 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (483)
+..++........||.++. +++ +.+.++.++. .+...+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~---~~~------------------------------------~~~~~~~~~~--~~~~~~~ 224 (392)
T PRK12382 186 VLPLLAWAFNGTVRKVPAH---AGE------------------------------------RPSLWSVVGL--IWKPGLG 224 (392)
T ss_pred HHHHHHHHHHHhccCCCCC---ccc------------------------------------CchHHHHHHH--HHHhHHH
Confidence 5444333322333332210 000 0000111110 0010111
Q ss_pred HHhhhhhhccchhhhHHhHHHHHHHcCCCC-chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHH
Q 011565 288 VGLMVIQQFGGINAIAFYAANIFQTAGLSP-STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAF 366 (483)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (483)
..+..... .....+.+.++++.+.+. +.......++.+++++..+++.||+++|+.+..+..+..++..++...
T Consensus 225 ~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~- 299 (392)
T PRK12382 225 LALQGVGF----AVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA- 299 (392)
T ss_pred HHHHHHHH----hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-
Confidence 11111111 122333344444445443 344445566778899999999999999999888877777766554432
Q ss_pred HHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhh
Q 011565 367 FLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSY 445 (483)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~ 445 (483)
.+.........+.+...+...+...+...|..|+++|+++.|+.+....+|..++|.+.|++.+ .++.
T Consensus 300 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~ 368 (392)
T PRK12382 300 -----------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYP 368 (392)
T ss_pred -----------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 2223333344444555555556666777888999999999999999999999999999999998 5666
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 011565 446 GTFLLYAAVNILGIVFITTV 465 (483)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~ 465 (483)
..+.+.+++.+++.++.+..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 369 SVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66667666666665554433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=267.92 Aligned_cols=375 Identities=20% Similarity=0.228 Sum_probs=259.0
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH
Q 011565 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127 (483)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 127 (483)
.+.......+..+..+++.....+..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444445555566666666777888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHH
Q 011565 128 GWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLA 203 (483)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f 203 (483)
+.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++ ..+||+.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~ 174 (398)
T TIGR00895 95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLF 174 (398)
T ss_pred HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999888887765 56899999
Q ss_pred HHhHHHHHH-HHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcc
Q 011565 204 LVGVIPCAV-LLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLH 282 (483)
Q Consensus 204 ~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (483)
++.++..++ ..+.+.++||++++..++ +.++..+..++.........++ +.++. +..++..+...+.+++++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 250 (398)
T TIGR00895 175 YVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQ-KATQGTKRSVFKALFQGKTAR 250 (398)
T ss_pred hhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--ccccc-ccccchhhHHHHHHhcchhHH
Confidence 997655444 455577789887655443 3333222222221111000000 00000 000011111122233333222
Q ss_pred hHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHH
Q 011565 283 SVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGC 359 (483)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (483)
.... ..+..+...........+.+.+.+..+.+. +.......++.++++++.+++.||+++|+.. ....+..+..
T Consensus 251 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 328 (398)
T TIGR00895 251 ITVL-LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFA 328 (398)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHH
Confidence 2222 222222222233344555665666666664 3445566778889999999999999998433 3333333322
Q ss_pred HHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 360 LLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
.++... . .+........++.+.+.+...+...++..|.+|++.|+++.|+.+....+|..++|.+.|++
T Consensus 329 ~~~~~~--~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 329 VLVGST--L---------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHH--h---------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 222221 0 22333444555566666666777889999999999999999999999999999999999875
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=271.38 Aligned_cols=396 Identities=14% Similarity=0.105 Sum_probs=257.5
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH
Q 011565 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127 (483)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 127 (483)
++..+....+...........+....|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3444445555555555555555666777775 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-----cch
Q 011565 128 GWLAIYFS----EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT-----VAT 198 (483)
Q Consensus 128 ~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~-----~~~ 198 (483)
+.+++++. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+.. ..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 183 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND 183 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence 98888765 467788899999999999988988999999999999999999999999999888876543 358
Q ss_pred hHHHHHHhHHHHHHH-HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhh-hHHhh
Q 011565 199 WRTLALVGVIPCAVL-LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKAR-LLDLF 276 (483)
Q Consensus 199 wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 276 (483)
||+.|++.++.+++. ++.++++||+|++...+ +.++. +.+...... +. ++.+.+.+.. .+..+
T Consensus 184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~------~~-~~~~~~~~~~~~~~~~ 248 (438)
T TIGR00712 184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEY-------RNDYPDDYN------EK-AEQELTAKEIFMQYVL 248 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhc-------ccccccccc------cc-cccccchHHHHHHHHc
Confidence 999999988777664 45567778876532100 00000 000000000 00 0000001111 12356
Q ss_pred hcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHh
Q 011565 277 QKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAA 352 (483)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 352 (483)
+++.++...+...+.....+ ....|.|.++++ .|.++ +....+..+.+++++++++++.||+++++....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~ 324 (438)
T TIGR00712 249 PNKLLWYIAIANVFVYLLRY----GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGV 324 (438)
T ss_pred cCchHHHHHHHHHHHHHHHH----HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHH
Confidence 77777665554444443332 333455555543 35554 45556677788999999999999996543333333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHH-HH
Q 011565 353 TGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGA-WA 431 (483)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~ 431 (483)
....+......... . .+..+........+..+....+..........|.+|++.|+++.|+.+...++|+ ++
T Consensus 325 ~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~ 397 (438)
T TIGR00712 325 FFMTLVTIAVIVYW-M------NPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 397 (438)
T ss_pred HHHHHHHHHHHHHH-h------cCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhh
Confidence 22222111111110 0 0111122222222223322222222223456789999999999999999988874 68
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhcccCCC
Q 011565 432 ISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVPETK 470 (483)
Q Consensus 432 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (483)
+|.+.|.+.| .++...+.+..++.+++.+.....++|.|
T Consensus 398 gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 398 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred cchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999988 56666667777777777776666676655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=282.32 Aligned_cols=377 Identities=17% Similarity=0.159 Sum_probs=270.9
Q ss_pred HHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHH
Q 011565 52 TLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLA 131 (483)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 131 (483)
+..++++.+...++....++.+|.+.+++|.++++.+|+.+.+.++..++.++.|+++||+|||++++.+.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 44556677777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhH
Q 011565 132 IYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGV 207 (483)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~ 207 (483)
+++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++ ..+||+.|++.+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999988888776 569999999988
Q ss_pred HHHHHHHH-HhhcCCCChhHHHhhCCHHHHHHHHH---------HH-hcCcccc--hHHHHHH---------HHHHHHHc
Q 011565 208 IPCAVLLL-GLFLIPESPRWLAKIGKHEEFEAALQ---------KL-RGKDADI--SQEATEI---------QEYIETLE 265 (483)
Q Consensus 208 ~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~---------~~-~~~~~~~--~~~~~~~---------~~~~~~~~ 265 (483)
+++++..+ .+++.||+++. ++++.+....... .. ++.+.+. +.+.... ....++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT 241 (485)
T ss_pred HHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 77766444 35566765431 1112221111100 00 1111111 0000000 00001111
Q ss_pred cCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhc
Q 011565 266 RLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRA 342 (483)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~ 342 (483)
++++....++++++.++...+..++..+..+......+.|.... .|.++ +....+..++.+++.++.|++.||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~ 318 (485)
T TIGR00711 242 DDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV---LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI 318 (485)
T ss_pred CCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12222234577888777666665555554444344444444332 35554 4555566778889999999999999
Q ss_pred CCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHH
Q 011565 343 GRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTT 422 (483)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 422 (483)
+||+.+..+..+.+++..++.... .+..+........++.+.+.+...+.......+..|+++++++.|+.+
T Consensus 319 ~~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 390 (485)
T TIGR00711 319 DPRKLVTIGLILYAVGFYWRAFTF--------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSN 390 (485)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHH
Confidence 999988888777777666554211 112233344444555555555555455566677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011565 423 LVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 423 ~~~~~g~~~~~~~~g~~~~ 441 (483)
....+|+.+|+.+.+.+.+
T Consensus 391 ~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 391 FTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=261.78 Aligned_cols=337 Identities=17% Similarity=0.215 Sum_probs=245.9
Q ss_pred hhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchh
Q 011565 60 YSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGAL 139 (483)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 139 (483)
+....+.....|..|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 33455667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHH
Q 011565 140 SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLL 215 (483)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~ 215 (483)
.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++ ..+||+.|++.++..++..+
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888887776 56899999997777666443
Q ss_pred -HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhh
Q 011565 216 -GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQ 294 (483)
Q Consensus 216 -~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (483)
.+++.||+++.. ++.+ .+.....+++.++++..+...+...+....
T Consensus 175 ~~~~~~~~~~~~~---~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (385)
T TIGR00710 175 LIFFILPETLPYE---ARIQ------------------------------ISTYFETFLLLLKSKMFWGYALIYGASFGG 221 (385)
T ss_pred HHHHhCCCCCCCc---ccCC------------------------------HHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 455667754210 0000 000112345566777666555444443333
Q ss_pred hccchhhhHHhHHHHHH-HcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHh
Q 011565 295 QFGGINAIAFYAANIFQ-TAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKT 370 (483)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (483)
... ...+.|.+++ ..+.++. .......++.+++.++.+++.||+++|+.+..+..+..++..++......
T Consensus 222 ~~~----~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 295 (385)
T TIGR00710 222 FFA----FFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL-- 295 (385)
T ss_pred HHH----HHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 222 2223333332 3455543 44455677888999999999999999998887777766666555443111
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 371 YGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
.............+.+.+.....+.......|..| +.++++.++.+...+.++.+.+.+.+...+
T Consensus 296 -----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 296 -----GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00122233333444555555556666677778776 678999999999887766666666665444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=261.02 Aligned_cols=366 Identities=14% Similarity=0.067 Sum_probs=250.3
Q ss_pred HHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHH
Q 011565 49 YLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAG 128 (483)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~ 128 (483)
........+..+....+...+.|.+|.+.+++|.+.++.++..+++.++++++++++|+++||+|||++++.+.++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 94 (413)
T PRK15403 15 LFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA 94 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence 33444446666777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHH
Q 011565 129 WLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLAL 204 (483)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~ 204 (483)
.+++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+||.+++ ..+||+.|+
T Consensus 95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~ 174 (413)
T PRK15403 95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA 174 (413)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999998777777888999999999999999999988888888888776 569999999
Q ss_pred HhHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcch
Q 011565 205 VGVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHS 283 (483)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (483)
+.++..++..+. ++.+||+++. +++..+ .+....++++++|++.++.
T Consensus 175 ~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~-----------------------------~~~~~~~~~~ll~~~~~~~ 222 (413)
T PRK15403 175 IIAVMGLIAFVGLLLAMPETVKR---GAVPFS-----------------------------AKSVLRDFRNVFRNRLFLT 222 (413)
T ss_pred HHHHHHHHHHHHHHHhCCCCccc---cCCCCC-----------------------------hHHHHHHHHHHHcCHHHHH
Confidence 988877765544 5667886431 000000 0001234567778887776
Q ss_pred HHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCCchH---HHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHH
Q 011565 284 VTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSPSTG---TISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGC 359 (483)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (483)
..+...+.....+. ...+.|.+.++ .+.++... ......+.+++..+.+++.++..+++.......+..++.
T Consensus 223 ~~l~~~~~~~~~~~----~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~ 298 (413)
T PRK15403 223 GAATLSLSYIPMMS----WVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGL 298 (413)
T ss_pred HHHHHHHHHHHHHH----HHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 55554444443322 22333444433 36665433 333455666767777776655444444333333333333
Q ss_pred HHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 360 LLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
.++....... ...+........+.+.+.+...|......... ....+|++.++.+.....+...++...+++
T Consensus 299 ~l~~~~~~~~-------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 299 ALLIVGNLLW-------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221100 01222223333444444444445444322221 223479999999999999999999999998
Q ss_pred HhhhhhHHHHHHHHHHHHH
Q 011565 440 ETWSSYGTFLLYAAVNILG 458 (483)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~ 458 (483)
.+.+....+....+++.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 371 WFNGGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHcCCchHHHHHHHHHHHH
Confidence 8866666666655555444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=263.91 Aligned_cols=342 Identities=11% Similarity=-0.016 Sum_probs=256.3
Q ss_pred HhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 011565 57 SGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE 136 (483)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 136 (483)
.+.+...+..+...+.+|.+..+++.++.+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677888889999999999999999999999999999999999999999999999999999999988888
Q ss_pred -----chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhH
Q 011565 137 -----GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGV 207 (483)
Q Consensus 137 -----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~ 207 (483)
+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++ ..+||+.|++.+
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888876 568999999977
Q ss_pred HHHHHHHHHhhcC--CCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHH
Q 011565 208 IPCAVLLLGLFLI--PESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVT 285 (483)
Q Consensus 208 ~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (483)
+..++..+..+.+ ||+++ +++.+. + ++. .++....+++.+|++..+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~----~~~~~~-~-------------~~~-----------~~~~~~~~~~~~~~~~~~~~~ 216 (365)
T TIGR00900 166 VGFAISALLIVSVRIPELAA----SEIQAL-S-------------NAV-----------LRDTREGIKFVLKNPLLRTLL 216 (365)
T ss_pred HHHHHHHHHHHhcccccCCC----cccccc-c-------------hhH-----------HHHHHhHHHHHHcCcHHHHHH
Confidence 7666654443333 33221 000000 0 000 001122345667777766655
Q ss_pred HHHHhhhhhhccch-hhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHH
Q 011565 286 IGVGLMVIQQFGGI-NAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLL 361 (483)
Q Consensus 286 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 361 (483)
....+......... ...+++..+. .+.+. +.......++.+++.++.+++.||.+||+.+..+.....+++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (365)
T TIGR00900 217 LLALLFNLVFAPAIVALFPYVQSKY---LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV 293 (365)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH---hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 55554444433222 3444444433 34443 44555667788899999999999999998887776666655555
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 362 LAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
+... + .+.+......++.+.+.+...+...++..|..|++.|+++.|+.+...+++..++|.+.|.+.|
T Consensus 294 ~~~~----------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 294 VGLT----------P-PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHhh----------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4442 1 1234445555666666666677788899999999999999999999999999999999999877
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=246.83 Aligned_cols=366 Identities=16% Similarity=0.145 Sum_probs=277.9
Q ss_pred hhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchh-
Q 011565 61 SFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGAL- 139 (483)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~- 139 (483)
...+.....+++.+.|.+|+|+|++|.+++.++..+..++..++.|.+.||||.|++..+++++..+..+..+++.+.+
T Consensus 25 v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~ 104 (417)
T COG2223 25 VGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS 104 (417)
T ss_pred HHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 3334455667777889999999999999999999999999999999999999999999999999999999999987555
Q ss_pred --HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHH----HHHHhhccch---hHHHHHHhHHHH
Q 011565 140 --SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGAS----TFFIIGTVAT---WRTLALVGVIPC 210 (483)
Q Consensus 140 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~----~~~~l~~~~~---wr~~f~~~~~~~ 210 (483)
++++++.+.|++. +.+.....++++|+||+++|.++|+.. ..++|.. ++|.+....+ ||....+..+..
T Consensus 105 ~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l 182 (417)
T COG2223 105 TWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVAL 182 (417)
T ss_pred hHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999985 578899999999999999999999998 6666655 4566666677 999999877777
Q ss_pred HH-HHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHH
Q 011565 211 AV-LLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVG 289 (483)
Q Consensus 211 ~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (483)
++ .++.++.+.|.|.....+++ ..+..++.++++++.|.+.+.+.
T Consensus 183 ~v~~v~~~~~~~d~p~~r~~~~~----------------------------------~~~~~~~~v~~~~~~W~lsllY~ 228 (417)
T COG2223 183 AIAAVLAWLGMNDVPEHRASVKP----------------------------------QLPAQLKAVFSNKDTWLLSLLYF 228 (417)
T ss_pred HHHHHHHHHHhCCChhhhccccc----------------------------------cchhHHHHHhcCcchHHHHHHHH
Confidence 66 55558888887753111110 00144566778888888877777
Q ss_pred hhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHH
Q 011565 290 LMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLK 369 (483)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (483)
..+..+.....+++.|+...+.....+++.......+.+.+.++++|+++||+|.+|.+...+..++++...+.......
T Consensus 229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~ 308 (417)
T COG2223 229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF 308 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc
Confidence 77666555555555555555544444456667777788889999999999999999999988888888777776541100
Q ss_pred hcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hh-hhHH
Q 011565 370 TYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WS-SYGT 447 (483)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~-~~~~ 447 (483)
....+........+....+.+......+.++...+| ++.|.+.|+....+.+|+..-|...|...+ .+ +...
T Consensus 309 -----~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~ 382 (417)
T COG2223 309 -----GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGA 382 (417)
T ss_pred -----ccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHH
Confidence 001233444444455555555555666777788877 477999999999999999999999999988 33 5666
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 011565 448 FLLYAAVNILGIVFITTVVPE 468 (483)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~ 468 (483)
+.++..+.+++.+..+....+
T Consensus 383 f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 383 FMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777666655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=256.42 Aligned_cols=348 Identities=15% Similarity=0.103 Sum_probs=246.2
Q ss_pred HHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHH
Q 011565 54 VAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY 133 (483)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 133 (483)
.+.++.+......+...|.+|.+.+++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhccch---hHHHHHHhHHHH
Q 011565 134 FSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVAT---WRTLALVGVIPC 210 (483)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~~---wr~~f~~~~~~~ 210 (483)
+++|++.++++|+++|++.+...+...+.+.+..++++|+++++....+..+|..+|+.+++... ++...+..+...
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 169 (381)
T PRK03633 90 LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVL 169 (381)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999999999999887321 122223322222
Q ss_pred HHHH-HHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHH
Q 011565 211 AVLL-LGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVG 289 (483)
Q Consensus 211 ~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (483)
...+ +.+...+++++ + ++++.+.++.++++.++.......
T Consensus 170 ~~~~~~~~~~~~~~~~------~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 210 (381)
T PRK03633 170 AAILPLLFTRILNQQA------E---------------------------------NHDSTSIWPMLKLRQARLGVNGCI 210 (381)
T ss_pred HHHHHHHHhcccCCCC------C---------------------------------CCCCCCHHHHHHhcchHHHHHHHH
Confidence 2211 11222222100 0 000112344566666554332222
Q ss_pred hhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHH
Q 011565 290 LMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAF 366 (483)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (483)
....... ....+.|.+.++.+.+.. .......+..+++++..+++.||+++|+.+..+.....++.+.+..
T Consensus 211 ~~~~~~~----~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-- 284 (381)
T PRK03633 211 ISGIVLG----SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS-- 284 (381)
T ss_pred HHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh--
Confidence 2222222 222344555555566643 3344556777899999999999999999887777666665543321
Q ss_pred HHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhh
Q 011565 367 FLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSY 445 (483)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~ 445 (483)
.. .......+.+.......|...+.+.|..|+++++...+..+...++|..++|.+.|++.| .+..
T Consensus 285 -----------~~--~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~ 351 (381)
T PRK03633 285 -----------QA--AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDN 351 (381)
T ss_pred -----------hH--HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 01 111222233333445567777888898888888888888888899999999999999988 5555
Q ss_pred HHHHHHHHHHHHHH
Q 011565 446 GTFLLYAAVNILGI 459 (483)
Q Consensus 446 ~~~~~~~~~~~~~~ 459 (483)
..+.+.+.+.++..
T Consensus 352 ~~f~~~~~~~l~~~ 365 (381)
T PRK03633 352 LLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666555555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=257.78 Aligned_cols=363 Identities=12% Similarity=-0.006 Sum_probs=245.1
Q ss_pred hhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhch
Q 011565 59 SYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGA 138 (483)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 138 (483)
.+...+.........+.+.+|+|.++.+.+++.+.+.+++.+.++++|+++||+|||++++++.++.+++++.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~ 91 (393)
T PRK11195 12 QFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP 91 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455566789999999999999999999999999999999999999999999999999999988887764
Q ss_pred hHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc---chhHHHHHHhHHHHHHHHH
Q 011565 139 LSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV---ATWRTLALVGVIPCAVLLL 215 (483)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~---~~wr~~f~~~~~~~~~~~~ 215 (483)
++.|+++|++.+...|...+++.|++|+++|++++++.+....+|..+||.+++. ..|+..+.+.+...++..+
T Consensus 92 ---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 92 ---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAAL 168 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999988872 2466666665555444555
Q ss_pred HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhh
Q 011565 216 GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQ 295 (483)
Q Consensus 216 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (483)
..+.+||+|++..+++. +. ... .++ ...+.+.+++++..+.......+.....
T Consensus 169 ~~~~l~~~~~~~~~~~~-~~-~~~-----------------~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (393)
T PRK11195 169 FNLFIPRLGARRPGQSW-NP-IAL-----------------LRD--------FFHACRVLWRDKLGRFSLAGTTLFWGAG 221 (393)
T ss_pred HHhcCCCCcccccccCC-CH-HHH-----------------HHH--------HHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 56778886532110000 00 000 000 0112345667776655444433333333
Q ss_pred ccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 296 FGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
.......+.|.+..++......+......+++.+++.+..+++.||.++++.+..+.. ..+....+...
T Consensus 222 ~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~---------- 290 (393)
T PRK11195 222 ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ---------- 290 (393)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH----------
Confidence 3333344455555442222223455566678888999999999999888877666542 22222222211
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCcc-chhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINI-KGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAV 454 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 454 (483)
.+.+......++.+.+.+...+...+...+..|++. +|++.++.+...+++..++..+.+.+...+-...+.+.+..
T Consensus 291 --~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (393)
T PRK11195 291 --HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFG 368 (393)
T ss_pred --hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223333444445555555555556677777755554 79999999999999999999999977666655555555444
Q ss_pred HHHHHHHHHh
Q 011565 455 NILGIVFITT 464 (483)
Q Consensus 455 ~~~~~~~~~~ 464 (483)
.+++..+...
T Consensus 369 ~~~~~~~~~~ 378 (393)
T PRK11195 369 LLVALAMALL 378 (393)
T ss_pred HHHHHHHHHH
Confidence 4444444333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=256.01 Aligned_cols=363 Identities=15% Similarity=0.058 Sum_probs=253.4
Q ss_pred hhhhhcccccccCcchHHHHhhhcCchhH-----HHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHH
Q 011565 58 GSYSFGTGVGYSSPTQNAIREDLSLSLAE-----YSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAI 132 (483)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~ 132 (483)
+.+......+...|.+|.+.+++|.+..+ .|++.+++.++..++++++|+++||+|||+++..+.++.+++.+++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence 44455556667888999999999998654 4899999999999999999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHH
Q 011565 133 YFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVI 208 (483)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~ 208 (483)
.++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..+++.+++ ..+||+.|++.++
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 180 (408)
T PRK09874 102 GLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS 180 (408)
T ss_pred HHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999999999865 56777888999999999999999999988888888887776 4689999999887
Q ss_pred HHHHHHH-HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHH
Q 011565 209 PCAVLLL-GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG 287 (483)
Q Consensus 209 ~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (483)
..++..+ .++++||+++.. ++.++ .+..+..+.++++..+.....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 226 (408)
T PRK09874 181 VLFLCFLVTLFCIRENFQPV---SKKEM-------------------------------LHMREVVTSLKNPKLVLSLFV 226 (408)
T ss_pred HHHHHHHHHHHHhccCcccc---cchhh-------------------------------hHHHHHHHhCcCCchHHHHHH
Confidence 7666444 355666653210 00000 000111233445544332222
Q ss_pred -HHhhhhhhccchhhhHHhHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHH
Q 011565 288 -VGLMVIQQFGGINAIAFYAANIFQTAGLS---PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLA 363 (483)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 363 (483)
..+...........++.|.....+..... .+......+++.+++.+..+++.||++||+.+..+.....++.+.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 227 TTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 11111111111122233332221110000 12223344567778888999999999999988877766655554433
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-h
Q 011565 364 AAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-W 442 (483)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~ 442 (483)
.. .+.+.+....++.+.+.+...+...+...+..|++.+++..++.+....+|..++|.+.|.+.+ .
T Consensus 307 ~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~ 374 (408)
T PRK09874 307 FV------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY 374 (408)
T ss_pred Hh------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 32 2233344444555666666667777777888899999999999999999999999999999988 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccc
Q 011565 443 SSYGTFLLYAAVNILGIVFITTVVP 467 (483)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
++...+.+.+++.++..++.++..+
T Consensus 375 g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 375 GFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777766665554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=268.07 Aligned_cols=359 Identities=15% Similarity=0.101 Sum_probs=246.6
Q ss_pred hhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchh
Q 011565 60 YSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGAL 139 (483)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 139 (483)
+....+....++..|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 84 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLW 84 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHH
Confidence 44455667778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHH-hhc----cchhHHHHHHhHHHHHH-H
Q 011565 140 SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFI-IGT----VATWRTLALVGVIPCAV-L 213 (483)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~-l~~----~~~wr~~f~~~~~~~~~-~ 213 (483)
.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++. ++. ..+||+.|++.+++.++ .
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (379)
T TIGR00881 85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVS 164 (379)
T ss_pred HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888883 333 56899999987776655 4
Q ss_pred HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhh
Q 011565 214 LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVI 293 (483)
Q Consensus 214 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (483)
++.+++.||+|+....+.+.++. .+ +.+. .++..+++.+..+...+++++++..+...+...+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (379)
T TIGR00881 165 LICFLLLRDSPQSCGLPPAEEMP---------NE-EPDG----DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYV 230 (379)
T ss_pred HHHheeeCCCccccccCccccCc---------cc-cccc----ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 45566777765421111000000 00 0000 0000001111223345667777777666555555544
Q ss_pred hhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHh
Q 011565 294 QQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKT 370 (483)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (483)
.......+.+.|..+ ..+.+. +.......++.++++++.+++.||..+++...............+.....
T Consensus 231 ~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--- 304 (379)
T TIGR00881 231 VRTGILDWSPLYLTQ---EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--- 304 (379)
T ss_pred HHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc---
Confidence 433333333333322 235553 44555667788899999999999864433322222221111111111100
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011565 371 YGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETW 442 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 442 (483)
....+...........+....+..+....+..|..|++.|+++.|+.+....+|..++|.+.|.+.|.
T Consensus 305 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 305 ----NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred ----CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence 00112223333334444444444455567789999999999999999999999999999999999883
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=267.41 Aligned_cols=384 Identities=13% Similarity=0.043 Sum_probs=250.8
Q ss_pred HHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH
Q 011565 48 VYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127 (483)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 127 (483)
+|.++..+.+...........++...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 96 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL 96 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 34444444444433333345567778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHH-HHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHH
Q 011565 128 GWLAIYFSEGALSLDL-GRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTL 202 (483)
Q Consensus 128 ~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~ 202 (483)
+.++++++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++...+..+|..+++.+++ ..|||+.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~ 175 (455)
T TIGR00892 97 GMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS 175 (455)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence 9999999999998865 5799999998777777888899995 78999999999999988888877665 5699999
Q ss_pred HHHhHHHHHHHHHHhhcC-CCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCc
Q 011565 203 ALVGVIPCAVLLLGLFLI-PESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYL 281 (483)
Q Consensus 203 f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (483)
|++.+++.++..+..+++ ++.+.. ++.+.++ ++ ...... . .+.... ....++..+....+.++++.+
T Consensus 176 f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~~---~~~~~~-~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 243 (455)
T TIGR00892 176 FLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-KE---GLPPDG-S--TKKLSK---KSTAEKINRFLDFSLFTHRGF 243 (455)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-cc---cCCCCC-c--cccccc---cchhhhhhhhcchHHhcCchH
Confidence 999888776654443333 322210 0000000 00 000000 0 000000 000000001111246677766
Q ss_pred chHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhc--CCccchhhHhHHH-
Q 011565 282 HSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRA--GRKPLLLFAATGL- 355 (483)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~- 355 (483)
+......++........ ..+++.+.++.+.+.. ....+.+++.++++++.+++.||. ++|+.........
T Consensus 244 ~~~~~~~~l~~~~~~~~----~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 244 LVYLSGNVIMFLGFFAP----IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred HHHHHHHHHHHHHccch----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 65555444444433332 3344444455566643 344455677778888999999973 3333333322222
Q ss_pred -HHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHH
Q 011565 356 -LLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISY 434 (483)
Q Consensus 356 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 434 (483)
.++.+++... .+.+.++...++.+...+...+...+.+.|.+|+++++++.|+++....+|.+++|.
T Consensus 320 ~~l~~ll~~~~------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~ 387 (455)
T TIGR00892 320 NGLTHLLCALA------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPP 387 (455)
T ss_pred HHHHHHHHHHh------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccc
Confidence 2222222111 233444555666666666666777888899999999999999999999999999999
Q ss_pred HHHHHHh-h-hhhHHHHHHHHHHHHHHH
Q 011565 435 TFNFLET-W-SSYGTFLLYAAVNILGIV 460 (483)
Q Consensus 435 ~~g~~~~-~-~~~~~~~~~~~~~~~~~~ 460 (483)
+.|.+.+ . ++...+.+.+++.+++.+
T Consensus 388 i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 388 LAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred ceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999888 3 344566665555544433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=258.02 Aligned_cols=349 Identities=16% Similarity=0.086 Sum_probs=244.7
Q ss_pred HHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHH
Q 011565 52 TLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLA 131 (483)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 131 (483)
+..+.+..+..++......+..|.+++++|+|+.+.+++.+.+.+++.+++++.|++.||+|||+++..+..+++++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l 107 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 33444455666666777888899999999999999999999999999999999999999999999999999999999988
Q ss_pred H---HHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc------------
Q 011565 132 I---YFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV------------ 196 (483)
Q Consensus 132 ~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~------------ 196 (483)
+ .++++++.++++|+++|+|.|...+..++++.|+.|+++|.+.+++.+..+.+|..+++.++..
T Consensus 108 ~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~ 187 (438)
T PRK10133 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchh
Confidence 6 5688999999999999999999999999999998777777777888888888888888766430
Q ss_pred ------------------chhHHHHHH-hHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHH
Q 011565 197 ------------------ATWRTLALV-GVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATE 256 (483)
Q Consensus 197 ------------------~~wr~~f~~-~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (483)
.+||++|+. .++..++.++. ....||.+.. +.+ +
T Consensus 188 ~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~~-~---------------------- 241 (438)
T PRK10133 188 VLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-D---------------------- 241 (438)
T ss_pred hhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---ccc-c----------------------
Confidence 246666654 33333333222 3334543210 000 0
Q ss_pred HHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHH-HcCCCC---chHHHHHHHHHHHHH
Q 011565 257 IQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQ-TAGLSP---STGTISYALLQVVVT 332 (483)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 332 (483)
+++.....+.++++++|.++...+..++..........+.+.|+ .+ ..|.++ +.....+.++.++++
T Consensus 242 ------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l---~~~~~g~s~~~ag~~~~~~~~~~~vG~ 312 (438)
T PRK10133 242 ------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYA---VEEIPGMTAGFAANYLTGTMVCFFIGR 312 (438)
T ss_pred ------ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00001122345677788776655554444444333333333232 22 346665 345567788889999
Q ss_pred HHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCc
Q 011565 333 FFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPIN 412 (483)
Q Consensus 333 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 412 (483)
++++++.||+++|+.+..+..+..+.+++.... ... .....+.+.+++.+...|..++...+..|+
T Consensus 313 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~- 378 (438)
T PRK10133 313 FTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ- 378 (438)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-
Confidence 999999999999998887766665554443321 111 223345556777778889988999998775
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHh-hh-hhHHHHH
Q 011565 413 IKGVGGSLTTLVNWFGAWAISYTFNFLET-WS-SYGTFLL 450 (483)
Q Consensus 413 ~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~-~~~~~~~ 450 (483)
+.+.+.++.. ...+|+.++|.+.|.+.| .+ ....+++
T Consensus 379 ~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v 417 (438)
T PRK10133 379 DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_pred hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence 4677888876 455788999999999888 33 2344443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=255.02 Aligned_cols=353 Identities=14% Similarity=0.110 Sum_probs=239.3
Q ss_pred hhhhhcccccccCcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHH-HHHHHHHHHHHHHHHh
Q 011565 58 GSYSFGTGVGYSSPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMR-VSSFVCIAGWLAIYFS 135 (483)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~ 135 (483)
.++...+..+...|.+|. +++++|.|+++.|++.+.+.+...+.+++.|+++||+||||.++ .+..+.+++.++++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 345566667778888885 57899999999999999999999999999999999999988765 4666667788888999
Q ss_pred hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhH--HhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHH
Q 011565 136 EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGAL--TSANQLLIVIGASTFFIIGT----VATWRTLALVGVIP 209 (483)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~--~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~ 209 (483)
++++.+++.|+++|.+.+...|...+++.|+.|+++|++. .+....+.++|..+++.+++ ..+||+.|++.++.
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999988888888888889999887777654 56666666777777776655 67899999998887
Q ss_pred HHHHHH-HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHH
Q 011565 210 CAVLLL-GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGV 288 (483)
Q Consensus 210 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (483)
.++..+ .++++||+|++..++ + .+.+.++.++++.++......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~---~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T TIGR00899 165 FVLCGVLVWLFLPSYPRGAPGA---L---------------------------------TRLEVRGLLASRDTRLLFVAC 208 (375)
T ss_pred HHHHHHHHHHhCCCcccCcccc---c---------------------------------CcchhhhhhcCcchHHHHHHH
Confidence 666544 456688876421000 0 000112234455554443333
Q ss_pred HhhhhhhccchhhhHHhHHHHHHHcCCCCchHHH---HHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHH
Q 011565 289 GLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTI---SYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAA 365 (483)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (483)
++............+.|.. +..+.+...... ......+++.++.+++.||++||+.+..+.....+....+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 285 (375)
T TIGR00899 209 TLMWGCNILYIINMPLLII---HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD 285 (375)
T ss_pred HHHHHHHHHHHhhhHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3333322222222333322 334555543333 3344556778899999999999998776655444433332221
Q ss_pred HHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhh
Q 011565 366 FFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSS 444 (483)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~ 444 (483)
.+.+.......+.+...+...+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+ .++
T Consensus 286 ------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~ 352 (375)
T TIGR00899 286 ------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSY 352 (375)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1223333333444444444456666778888875 56799999999999999999999999988 555
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 011565 445 YGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (483)
...+.+.+++.+++.+..
T Consensus 353 ~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 353 HAVYWFAIVMLIVALFCL 370 (375)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 566666666655554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=252.54 Aligned_cols=424 Identities=21% Similarity=0.233 Sum_probs=302.0
Q ss_pred ccCchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhh-c-------CchhHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q 011565 41 SKDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDL-S-------LSLAEYSVFGSILTFGAMIGAITSGPIADFI 112 (483)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~ 112 (483)
.....|+....+++...+.+.+.++...++++.|.+...+ | .++...+.+..+..+|.++||++.|+++||+
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~ 111 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF 111 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445778888899999999999999999999988777654 2 3456678999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHH
Q 011565 113 GRKGAMRVSSFVCIAGWLAIYFSE-------GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVI 185 (483)
Q Consensus 113 Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~i 185 (483)
|||+++...++++.+++++++++. -.+++...|++.|+|.|+-+|++.++.+|...+++||...+........
T Consensus 112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 999999999999999999887753 2567899999999999999999999999999999999877766555555
Q ss_pred HHHHHHHh----hc---------------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhC-CHHHHHHHHHHHhc
Q 011565 186 GASTFFII----GT---------------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIG-KHEEFEAALQKLRG 245 (483)
Q Consensus 186 G~~~~~~l----~~---------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~-~~~~~~~~~~~~~~ 245 (483)
|...|.++ .. ..-||..+.+++++++..+...+.+||++++..-.. +.+.+. .+..+
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k 268 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKK 268 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccc
Confidence 54444433 22 013999999999999999999999999998752222 222222 11111
Q ss_pred Cccc-chHHHHHHHHHHHHHccCchh---hhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHH
Q 011565 246 KDAD-ISQEATEIQEYIETLERLPKA---RLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGT 321 (483)
Q Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (483)
+... .+++.. .+...+.++. .+...+..+ .-+.++.....++..-..++....+...+++..+..++...
T Consensus 269 ~~~~~~~~~~~-----~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~ 342 (538)
T KOG0252|consen 269 VLSVDIEAEST-----AESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANT 342 (538)
T ss_pred ccccccchhhc-----cccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcch
Confidence 1100 000000 0111111111 133333333 33556666777777777777888888888887666643221
Q ss_pred H--H--HH--------HHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHH
Q 011565 322 I--S--YA--------LLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVY 389 (483)
Q Consensus 322 ~--~--~~--------~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (483)
. . .+ ...++|..+..+++|++|||+....++.++.+..+.+...... ........+...+.
T Consensus 343 ~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~-------~~~~~Gf~v~y~l~ 415 (538)
T KOG0252|consen 343 YHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ-------LENTIGFVVLYSLT 415 (538)
T ss_pred HHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc-------ccccCceeehHHHH
Confidence 1 1 11 1222344555668999999999999999988888777764210 11222233333444
Q ss_pred HHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHH
Q 011565 390 IGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET------WSSYGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~ 463 (483)
..+...+.......+.+|.+|.+.|+++.|+....+..|++++...+.++.+ .+....++++++++++..++ .
T Consensus 416 ~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~-T 494 (538)
T KOG0252|consen 416 FFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF-T 494 (538)
T ss_pred HHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe-e
Confidence 4455566677778899999999999999999999999999999999998877 34566777777777777555 4
Q ss_pred hcccCCCCCCHHHHHHhh
Q 011565 464 TVVPETKGRTLEEIQATM 481 (483)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~ 481 (483)
+++||+++++.+|++++.
T Consensus 495 ~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 495 LLIPETKGKSLEEISNEE 512 (538)
T ss_pred EEeecccccCHHHhcChh
Confidence 557799999999886553
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=253.52 Aligned_cols=331 Identities=15% Similarity=0.137 Sum_probs=238.3
Q ss_pred cccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 011565 63 GTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLD 142 (483)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (483)
.+....+.|.+|.+.+++|.++++.+++.+++.+++.++++++|+++||+|||+++..+..+.+++.++++++++++.++
T Consensus 19 ~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (401)
T PRK11043 19 FLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLL 98 (401)
T ss_pred HHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhh
Q 011565 143 LGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLF 218 (483)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~ 218 (483)
+.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++ ..+||+.|++.++..++..+..+
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888889999999999988888877777777777766654 67999999998877777655555
Q ss_pred cCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccc
Q 011565 219 LIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGG 298 (483)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (483)
+++|+++. ++ + ++++.++++++|++..+...+...+.....
T Consensus 179 ~~~~~~~~----~~-~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 219 (401)
T PRK11043 179 RLKPSKKA----RK-Q-------------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAF--- 219 (401)
T ss_pred HcCCCCCc----cc-c-------------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHH---
Confidence 55554320 00 0 001223455666665554333333222222
Q ss_pred hhhhHHhHHHHHHHcCCCCchHH---HHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 299 INAIAFYAANIFQTAGLSPSTGT---ISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
.....+.|.+.++.|.+..... ....++.+++++..+++.||+++|+..........++...+.......
T Consensus 220 -~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 292 (401)
T PRK11043 220 -FAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS------ 292 (401)
T ss_pred -HHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 2223344555555577654433 334567778889999999999998876655555444443333221110
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
............+.+...+...+.......+..| +.++++.|+.+..+..+...++.+.|.+.+
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 293 -HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred -cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1222333333444555555666666666667666 579999999999999999999999998877
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=261.46 Aligned_cols=339 Identities=22% Similarity=0.260 Sum_probs=246.0
Q ss_pred HhhhhhcccccccCcchH-HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q 011565 57 SGSYSFGTGVGYSSPTQN-AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS 135 (483)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 135 (483)
+..+...+......+.+| .+.+++|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 344455556666788888 8999999999999999999999999999999999999999999999999999997777777
Q ss_pred hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHH
Q 011565 136 EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCA 211 (483)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~ 211 (483)
+|++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++ ..+||+.|++.++..+
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 888899999999999999999999999999999999999999999999999999988877 4589999999888888
Q ss_pred HHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHh
Q 011565 212 VLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGL 290 (483)
Q Consensus 212 ~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (483)
+..++ ..+++++++...++++.++. ++.++.....++.+++++..|.......+
T Consensus 163 ~~~il~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
T PF07690_consen 163 IAAILFILFLPEPPPPRERESPKESE-------------------------SKKPKPLKPGFKSLFKNPVLWILLIAFFL 217 (352)
T ss_dssp HHHHHHHCCC---STTTT--SSTTTT---------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHH
T ss_pred hhhhhHhhhhhhcccccccccccccc-------------------------cccccccccccccccccchhhhhhhhhhH
Confidence 76553 45555543211111110000 00011111135666777766633333333
Q ss_pred hhhhhccchhhhHHhHHHH-HHHcCCC-Cch---HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHH
Q 011565 291 MVIQQFGGINAIAFYAANI-FQTAGLS-PST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAA 365 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (483)
..+.... ...+.+.+ .+..+.+ ... ......+..++++++.+++.||+++|+..........+....+...
T Consensus 218 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 218 FFFVFSG----FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HHHHHHH----HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHH----hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 33444443 3333555 333 3455566777779999999999999887777666666555555443
Q ss_pred HHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHH
Q 011565 366 FFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAIS 433 (483)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (483)
... .+........++.+.+.+...+...++..|..|+++++++.|+.+...++|..++|
T Consensus 294 ~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 294 PFS---------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHH---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 211 22334444555666666667788899999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=247.99 Aligned_cols=331 Identities=20% Similarity=0.225 Sum_probs=228.7
Q ss_pred ccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 011565 64 TGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDL 143 (483)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (483)
+...++.|.+|.+.+++|+++++.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY 84 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHH-HHhh
Q 011565 144 GRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLL-LGLF 218 (483)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~-~~~~ 218 (483)
.|+++|++.+...+...+++.|++|+++|++++++......+|..+++.+++ ..+||+.|++.++..++.. +..+
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888766 4689999999777776644 4456
Q ss_pred cCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccc
Q 011565 219 LIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGG 298 (483)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (483)
++||+++.. ++++ . + .+....++++.++++..+...+...+........
T Consensus 165 ~~~~~~~~~-~~~~-~--------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (377)
T PRK11102 165 FIPETLPKE-RRQP-F--------------H---------------LRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSF 213 (377)
T ss_pred hCCccCccc-ccCC-C--------------C---------------hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 677754210 0000 0 0 0001123445666665544433333322222111
Q ss_pred hhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 299 INAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
....+.+ +.+..+.++ +.......++.+++.++.+++.||+++|+.+..+.....+..+.+......
T Consensus 214 ~~~~~~~---~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~------- 283 (377)
T PRK11102 214 LTAGPFV---YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL------- 283 (377)
T ss_pred HHcCHHH---HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 1122222 223346554 344555677788999999999999999998887776544433332222110
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHH-HHHHHHHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVN-WFGAWAISYTFN 437 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~g 437 (483)
+...+.................+.......|..| +.++++.++.+... .+|..+++.+.+
T Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 284 -DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred -hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112222222222222223333444556677766 78899999987764 466666666544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=247.52 Aligned_cols=353 Identities=14% Similarity=0.071 Sum_probs=236.0
Q ss_pred cCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHH---H-hhchhHHHHH
Q 011565 69 SSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY---F-SEGALSLDLG 144 (483)
Q Consensus 69 ~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~ 144 (483)
..+.++.+.+|+|.|+++.+++.+.+.+++.+++++.|++.||+||||++..+..+++++.+++. + .++++.+++.
T Consensus 32 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (402)
T TIGR00897 32 EQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF 111 (402)
T ss_pred HHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 33455667789999999999999999999999999999999999999999999999998877653 3 3578888999
Q ss_pred HHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHH-HHHHHhhc----cchhHHHHHHhHHHHHHH-HHHhh
Q 011565 145 RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGA-STFFIIGT----VATWRTLALVGVIPCAVL-LLGLF 218 (483)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~-~~~~~l~~----~~~wr~~f~~~~~~~~~~-~~~~~ 218 (483)
|+++|++.+...+...+.+.+++|+++|++++++...+.++|. .+++.+++ ..||+..++......++. ++..+
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888888889999999999999999999999886 57777664 467665555543333332 22334
Q ss_pred cCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccc
Q 011565 219 LIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGG 298 (483)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (483)
+.+|.++.. ++++++ + .++.+..+++++|+|..+...+..++....
T Consensus 192 ~~~~~~~~~-~~~~~~------------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 237 (402)
T TIGR00897 192 SNKDIFTPQ-HMQTRE------------------K-----------FSELGKAATILFTNPNVLLGGMVRIINTIG---- 237 (402)
T ss_pred ccCCCCCcc-cccCCc------------------c-----------hhhHHHHHHHHHcChhHHHHHHHHHHHHHH----
Confidence 444432100 000000 0 000112345677777766555444443333
Q ss_pred hhhhHHhHHHHHHHcCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCccchh-hHhHHHHHHHHHHHHHHHHHhcCCc
Q 011565 299 INAIAFYAANIFQTAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLL-FAATGLLLGCLLLAAAFFLKTYGLA 374 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (483)
......+.|.+.+..|.+... ......++.+++++..|+++||++||+.+. .+.....++...+.... .
T Consensus 238 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~---~---- 310 (402)
T TIGR00897 238 LFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIP---Q---- 310 (402)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH---H----
Confidence 233445556666666766543 334556788899999999999999888764 22222333222222110 0
Q ss_pred ccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHH
Q 011565 375 LESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAA 453 (483)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~ 453 (483)
....+........++.+.+.....+. .....|.. +++|+++.|+.+....+|..++|.+.|.+.+ .+....+++.++
T Consensus 311 ~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~ 388 (402)
T TIGR00897 311 HFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAA 388 (402)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 00112233333444444444444333 34556654 4689999999999999999999999999998 676777777777
Q ss_pred HHHHHHHHHHh
Q 011565 454 VNILGIVFITT 464 (483)
Q Consensus 454 ~~~~~~~~~~~ 464 (483)
+.++..+...+
T Consensus 389 ~~~i~~~~~~~ 399 (402)
T TIGR00897 389 LYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHH
Confidence 76666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=248.05 Aligned_cols=343 Identities=12% Similarity=0.083 Sum_probs=235.5
Q ss_pred cccCcchH-HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 011565 67 GYSSPTQN-AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGR 145 (483)
Q Consensus 67 ~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (483)
....|.++ .+.+++|+|+.+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSC 106 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34456655 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc---cchhHHHHHHhHHHHHHHH-HHhhcCC
Q 011565 146 LATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT---VATWRTLALVGVIPCAVLL-LGLFLIP 221 (483)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~---~~~wr~~f~~~~~~~~~~~-~~~~~~~ 221 (483)
+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++ ..+||+.|++.++..++.. +..++.|
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998888999999999999999999999999888888888888776 5689999999877766543 3345555
Q ss_pred CChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhh
Q 011565 222 ESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINA 301 (483)
Q Consensus 222 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (483)
|.+. ++. +++.+.++++.++++.++...+.......... .
T Consensus 187 ~~~~-----~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 226 (400)
T PRK11646 187 AYKL-----STV-------------------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLAV----Q 226 (400)
T ss_pred cccc-----ccc-------------------------------chhhHHHHHHHHcCchHHHHHHHHHHHHHHHH----H
Confidence 5311 000 00011234556666655443333222222111 1
Q ss_pred hHHhHHHHHHHcCCCCchHHHH---HHHHHHHHHHHHHHHHh-hcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccc
Q 011565 302 IAFYAANIFQTAGLSPSTGTIS---YALLQVVVTFFNIIMID-RAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALES 377 (483)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (483)
...+.|.+.++.+.++...... .++....+....+++.| |.+.++.+..+..+..++..++...
T Consensus 227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------ 294 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------ 294 (400)
T ss_pred HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------------
Confidence 2233444444433343333333 33334444444455554 5665655666666666655544432
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHH
Q 011565 378 VPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWS-----SYGTFLLYA 452 (483)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~-----~~~~~~~~~ 452 (483)
.+...+.....+.+.+.....|...+++.+..|+++||++.|+.+....+|..++|.+.|++.|.+ ....+...+
T Consensus 295 ~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~ 374 (400)
T PRK11646 295 SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLG 374 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHH
Confidence 222223333333444444555677788899999999999999999999999999999999999843 233444444
Q ss_pred HHHHHHHHH
Q 011565 453 AVNILGIVF 461 (483)
Q Consensus 453 ~~~~~~~~~ 461 (483)
.+.+++.+.
T Consensus 375 ~~~~~~~~~ 383 (400)
T PRK11646 375 IIGLITLLA 383 (400)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=249.70 Aligned_cols=337 Identities=19% Similarity=0.137 Sum_probs=228.8
Q ss_pred hcccccccCcchHHHHhhhc--CchhHHHHHHHH-----HHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Q 011565 62 FGTGVGYSSPTQNAIREDLS--LSLAEYSVFGSI-----LTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF 134 (483)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~s~-----~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (483)
+.++...+++..+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 84 (394)
T TIGR00883 5 EWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 34444455556666666654 445666555443 33344578999999999999999999999999999999999
Q ss_pred hhchh--------HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-----------
Q 011565 135 SEGAL--------SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----------- 195 (483)
Q Consensus 135 ~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----------- 195 (483)
+++++ .+++.|+++|++.+...+...+++.|++|+++|++..++...+..+|..+++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~ 164 (394)
T TIGR00883 85 LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDAL 164 (394)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 99875 47899999999999999999999999999999999999999999999999887642
Q ss_pred -cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHH
Q 011565 196 -VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLD 274 (483)
Q Consensus 196 -~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (483)
..+||+.|++.++..++..+.....||++++..++++ ++..+.+.++
T Consensus 165 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~ 212 (394)
T TIGR00883 165 LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK--------------------------------HKKKRGPIRE 212 (394)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc--------------------------------cccccCCHHH
Confidence 4589999998877776666666667776542211100 1111223445
Q ss_pred hhhcCC--cchHHHHHHhhhhhhccchhhhHHhHHHHH-HHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccch
Q 011565 275 LFQKRY--LHSVTIGVGLMVIQQFGGINAIAFYAANIF-QTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLL 348 (483)
Q Consensus 275 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 348 (483)
.++++. ++.......+... .......+.+.+. +..+.+.. .......+..+++.++.+++.||++||+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 213 TLTKHRKPFLLGLGLVIATTT----TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHhchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 555543 2222222222222 2233444555555 33455543 344455677889999999999999999877
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHH-HHHHHH
Q 011565 349 LFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLT-TLVNWF 427 (483)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~ 427 (483)
.....+..+......... ....+........++.+...+...+...++..|.+|++.|+++.++. +....+
T Consensus 289 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 360 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMAL--------LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAI 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHH--------hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHH
Confidence 655443333221111111 01122333344445555555566677789999999999999999985 455678
Q ss_pred HHHHHHHHHHHHHhh
Q 011565 428 GAWAISYTFNFLETW 442 (483)
Q Consensus 428 g~~~~~~~~g~~~~~ 442 (483)
|..++|.+.|++.+.
T Consensus 361 g~~~~p~~~g~l~~~ 375 (394)
T TIGR00883 361 FGGFAPYIAAALVAM 375 (394)
T ss_pred HhhHHHHHHHHHHHH
Confidence 899999999999883
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=249.33 Aligned_cols=265 Identities=18% Similarity=0.161 Sum_probs=195.8
Q ss_pred hcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHH
Q 011565 62 FGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSL 141 (483)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (483)
.........+.+|.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus 15 ~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~ 94 (392)
T PRK10473 15 YPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLF 94 (392)
T ss_pred HHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 34444556688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHH-HH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLL-LG 216 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~-~~ 216 (483)
++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++ ..+||+.|++.++..++.. +.
T Consensus 95 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 95 LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999889999999999999999999999999888888888887765 5689999999877766644 34
Q ss_pred hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhc
Q 011565 217 LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQF 296 (483)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (483)
.+++||+++. +++.+ .......++.++++.++.......+......
T Consensus 175 ~~~~~~~~~~---~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (392)
T PRK10473 175 LFILKETRPA---RAPAA-------------------------------SSKPRENSESLLNRFFLSRLVITTLSVTVIL 220 (392)
T ss_pred HHHcCCCCCc---ccCCc-------------------------------cchHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 5667776421 00000 0001112234455544433333222222211
Q ss_pred cchhhhHHhHHHHH-HHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHH
Q 011565 297 GGINAIAFYAANIF-QTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAA 364 (483)
Q Consensus 297 ~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 364 (483)
. ...+.+.+. +..|.+.. ......++..+++.++.+++.||++||+.+..+..+..++.+++..
T Consensus 221 ~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 288 (392)
T PRK10473 221 T----FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL 288 (392)
T ss_pred H----HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222222 33466653 3445567778899999999999999999988887777766665554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=246.43 Aligned_cols=333 Identities=16% Similarity=0.090 Sum_probs=230.3
Q ss_pred hcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHH
Q 011565 62 FGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSL 141 (483)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (483)
..+......|.+|.+.+++|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++.++++++.+
T Consensus 20 ~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (394)
T PRK11652 20 GQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVL 99 (394)
T ss_pred HHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 33455667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHH-HHH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVL-LLG 216 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~-~~~ 216 (483)
++.|++.|++.+...+....+..|.+++++|+++.+....+..+|..++|.+++ ..+||+.|++.++..++. .+.
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888888999999999999999999999888888877765 568999999977766554 344
Q ss_pred hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhc
Q 011565 217 LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQF 296 (483)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (483)
.++.||+++.. ++++ ..+..+++.++++..+...+........
T Consensus 180 ~~~~~~~~~~~---~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 222 (394)
T PRK11652 180 ARWMPETRPAD---ARRT--------------------------------RVLASYRTLLSNRRFNCYLLMLIGTLAG-- 222 (394)
T ss_pred HHhCCccCccc---cchh--------------------------------HHHHHHHHHHcChHHHHHHHHHHHHHHH--
Confidence 56678764310 0000 0122344556666555433333222221
Q ss_pred cchhhhHHhHHHHHHH-cCCCCchH---HHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcC
Q 011565 297 GGINAIAFYAANIFQT-AGLSPSTG---TISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYG 372 (483)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (483)
......+.+.+.++ .+.+.... .....++.+++..+.+++.||.+++. ........++...+......
T Consensus 223 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---- 294 (394)
T PRK11652 223 --IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPGWF---- 294 (394)
T ss_pred --HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh----
Confidence 11122222333333 46555333 33345566677777777777777322 22222222222222111000
Q ss_pred CcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011565 373 LALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWS 443 (483)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~ 443 (483)
.....+.......+.+.+.+...+...++..|..| +.++++.++.+....+|..+++.+.+.+.+..
T Consensus 295 ---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 295 ---GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 01122333444445555555566777788888887 57899999999999999999999998876643
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=244.74 Aligned_cols=368 Identities=17% Similarity=0.130 Sum_probs=264.3
Q ss_pred hHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHH
Q 011565 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVC 125 (483)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 125 (483)
...+..+.+.++.+.+..++...+....+.+++.+|++++..|++.+.+.+.+.+++|+.|+++|||+||+++.+|..+|
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 34556677788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-----cchhH
Q 011565 126 IAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT-----VATWR 200 (483)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~-----~~~wr 200 (483)
.++.++++++..||+++++|.+.|+|.+...|.++++++|.+|.++|++++++++.+..+|..+|.+.+. ...||
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 9999999999999999999999999999999999999999999999999999999999999998887776 23499
Q ss_pred HHHHHhHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcC
Q 011565 201 TLALVGVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKR 279 (483)
Q Consensus 201 ~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (483)
|.|++.++++++..++ .++++|+++- ..++.. +++.. ........++.+.+.|++
T Consensus 189 ~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~-------~~~~~------------~~~~ts~~kDl~~l~~~~ 244 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVD-------GENKM------------VKPFTSVWKDLKVLAKIK 244 (493)
T ss_pred EEEEeehHHHHHHHHHHHhhccCcccc-----cccccc-------cCCcC------------CCCccchHHHHHHHHccC
Confidence 9999999998885544 7777776431 111100 00000 000112233445556667
Q ss_pred CcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCC----ccchhhHh
Q 011565 280 YLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGR----KPLLLFAA 352 (483)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~----~~~~~~~~ 352 (483)
.+....+.+....+...+...+.|.+.+...+..+++. .....+...++.+|.+.+|.++||+.| -......-
T Consensus 245 v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q 324 (493)
T KOG1330|consen 245 VFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQ 324 (493)
T ss_pred ceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHH
Confidence 66666677777777777777777888877777666543 345566677888999999999998432 12222222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcc-cccchhhhccccCCCccchhhhHHHHHHH-HHHHH
Q 011565 353 TGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSG-MGATPWVLMSEIFPINIKGVGGSLTTLVN-WFGAW 430 (483)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~ 430 (483)
+..+.+............ ............+++.+..... -.....-+..|++|++.|.++.++...+. .+|.+
T Consensus 325 ~~~~~g~~~s~~~L~~~~----~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~ 400 (493)
T KOG1330|consen 325 LSAALGAPLSIPFLFLFP----AFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDA 400 (493)
T ss_pred HHHhhhhhHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccC
Confidence 222222211111111100 0011222222222222222222 22334466788899999999999998775 55677
Q ss_pred HHHHHHHHHHh
Q 011565 431 AISYTFNFLET 441 (483)
Q Consensus 431 ~~~~~~g~~~~ 441 (483)
-+|++.|.+.|
T Consensus 401 ~~p~ivGilsd 411 (493)
T KOG1330|consen 401 ASPYIVGILSD 411 (493)
T ss_pred CCcceehhHHH
Confidence 77779999988
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=245.45 Aligned_cols=354 Identities=16% Similarity=0.108 Sum_probs=249.6
Q ss_pred hcccccccCcchH-HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhH
Q 011565 62 FGTGVGYSSPTQN-AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALS 140 (483)
Q Consensus 62 ~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (483)
.....+...|.+| .+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.
T Consensus 19 ~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (395)
T PRK10054 19 LTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTL 98 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344455566665 466789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc---cchhHHHHHHhHHHHHHHHH-H
Q 011565 141 LDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT---VATWRTLALVGVIPCAVLLL-G 216 (483)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~---~~~wr~~f~~~~~~~~~~~~-~ 216 (483)
++++|++.|.+.+...+...++..|.+|+++|++++++.....++|..++|.+++ ..+||..|++.++..++.++ .
T Consensus 99 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 99 VVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 9999999998888788888999999999999999999999999999999988877 34899999988777766543 3
Q ss_pred hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhc
Q 011565 217 LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQF 296 (483)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (483)
.+++||+++. ++.++ ++..+.++.+|++.++...+..++..+...
T Consensus 179 ~~~~~~~~~~----~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (395)
T PRK10054 179 QIWVQRSEKA----IATET-------------------------------GSVWSPSVLLQDKALLWFTCSGFLASFVSG 223 (395)
T ss_pred HHHHhccccc----cccch-------------------------------hhhhhhhhhccCceehHHHHHHHHHHHHHH
Confidence 4556654310 00000 000112456777877766665555444433
Q ss_pred cchhhhHHhHHHHHHHcCCCCchHH---HHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCC
Q 011565 297 GGINAIAFYAANIFQTAGLSPSTGT---ISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGL 373 (483)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (483)
....+.+.|.+.. .+.+.+..... ....+..+......+++.||.++|+.+..+..+..++...+...
T Consensus 224 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------- 294 (395)
T PRK10054 224 AFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-------- 294 (395)
T ss_pred HhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc--------
Confidence 3333455555443 22233332222 22333444556778899999999998887777666666555432
Q ss_pred cccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHH
Q 011565 374 ALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYA 452 (483)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~ 452 (483)
..+.+.+.....+.+.+.....|...+.+.+..|++.++++.+..+ ...+|..+||.+.|.+.| .+....+.+.+
T Consensus 295 ---~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~ 370 (395)
T PRK10054 295 ---GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILA 370 (395)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHH
Confidence 0122233334445555555555677778889999999999988765 677999999999999999 44445555544
Q ss_pred HHHHHHHHHHH
Q 011565 453 AVNILGIVFIT 463 (483)
Q Consensus 453 ~~~~~~~~~~~ 463 (483)
.+..+..++..
T Consensus 371 ~~~~~~~~~~~ 381 (395)
T PRK10054 371 LAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-31 Score=249.93 Aligned_cols=375 Identities=14% Similarity=0.038 Sum_probs=248.7
Q ss_pred HHHHHHHHHhhhhhccccc-ccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH
Q 011565 49 YLSTLVAVSGSYSFGTGVG-YSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA 127 (483)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 127 (483)
+.++..+++..+....+.. ...+.+..+.+|.+....+.+++.++|+++|+++++++|.|.||++..+.+....+.+++
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~ 123 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGL 123 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHH
Confidence 3334444444444444433 333334456689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----------cc
Q 011565 128 GWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----------VA 197 (483)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----------~~ 197 (483)
..++.....|++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+...+|.++|++++. ..
T Consensus 124 ~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~ 203 (495)
T KOG2533|consen 124 FGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA 203 (495)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence 99899889999999999999999999999999999999999999999999999999999888888765 34
Q ss_pred hhHHHHHHhHHHHHH-HHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhh
Q 011565 198 TWRTLALVGVIPCAV-LLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLF 276 (483)
Q Consensus 198 ~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (483)
||||.|++.+++.++ .++.++++|+.|....- .+.+|..-..++.+..+. ....++.++..+++.+
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f-l~~~ek~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~ 270 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF-LTDEEKELVVERLRESPS------------GGIENKFKWKGFKEAL 270 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecCChhhccc-cchHHHHHHHHHHHhccC------------CCcccccCHHHHHHHH
Confidence 899999998887777 55668999999862100 011111000111110000 0001125667888999
Q ss_pred hcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhc----CCccchhhHh
Q 011565 277 QKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRA----GRKPLLLFAA 352 (483)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~~~~~~~~~~ 352 (483)
+++..|...++.++......+..++.|.++..-.+....++.....+..++++++.+++|+++||+ .+|.......
T Consensus 271 ~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~ 350 (495)
T KOG2533|consen 271 KDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFL 350 (495)
T ss_pred hchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999988887777776555555555554441001123357788899999999999999999995 4444433333
Q ss_pred HHHHHHH-HHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC-CccchhhhHHHHHHHHHHHH
Q 011565 353 TGLLLGC-LLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP-INIKGVGGSLTTLVNWFGAW 430 (483)
Q Consensus 353 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~ 430 (483)
.+..+.. ..+... ..........+..........+......++... ..++-+..+........+++
T Consensus 351 ~~~~~~g~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~ 418 (495)
T KOG2533|consen 351 CLYAIIGAISLLAA------------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGA 418 (495)
T ss_pred HHHHHHHHHHHHhh------------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHH
Confidence 3332222 222221 112222222222222222333444555555554 34445555555666667777
Q ss_pred HHHHHHHHHHh--hhhhHHH
Q 011565 431 AISYTFNFLET--WSSYGTF 448 (483)
Q Consensus 431 ~~~~~~g~~~~--~~~~~~~ 448 (483)
++|.+...... ......+
T Consensus 419 ~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 419 ISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred hhhhhcccccCcchhhhhHH
Confidence 76666544333 3444444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=247.62 Aligned_cols=337 Identities=14% Similarity=0.078 Sum_probs=246.9
Q ss_pred HHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHH
Q 011565 52 TLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLA 131 (483)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 131 (483)
..+++...+..++..+...|.+|.+++++|+++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 33455566667777788899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH---hhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc------------
Q 011565 132 IYF---SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV------------ 196 (483)
Q Consensus 132 ~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~------------ 196 (483)
+.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 654 46899999999999999999999999999999999999999999999998888888877541
Q ss_pred ------------------chhHHHHHHhHHHHHHHHHHhhc--CCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHH
Q 011565 197 ------------------ATWRTLALVGVIPCAVLLLGLFL--IPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATE 256 (483)
Q Consensus 197 ------------------~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (483)
.+||++|++.+++.++..+.+.+ .||.++ ++ +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~---------------------- 216 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-A---------------------- 216 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-c----------------------
Confidence 25999999877766654444333 333211 00 0
Q ss_pred HHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHc--CCCCc---hHHHHHHHHHHHH
Q 011565 257 IQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTA--GLSPS---TGTISYALLQVVV 331 (483)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~ 331 (483)
++.....+.++++|+|.++...+..+++...+... ..|++.+.++. +.+.+ ...........+|
T Consensus 217 -------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~----~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vG 285 (410)
T TIGR00885 217 -------KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMC----WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFIS 285 (410)
T ss_pred -------ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 00001123345667777666555555555554333 34444444332 22222 2233344667899
Q ss_pred HHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCC
Q 011565 332 TFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPI 411 (483)
Q Consensus 332 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 411 (483)
+++++++.||+++|+.+.+......+.+++.... .... ....+.+.+++....+|..++...+..++
T Consensus 286 R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~------------~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~ 352 (410)
T TIGR00885 286 RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA------------GGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQ 352 (410)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998877776666665555542 1222 23444555666666779999999999987
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011565 412 NIKGVGGSLTTLVNWFGAWAISYTFNFLETW 442 (483)
Q Consensus 412 ~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~ 442 (483)
+.+..+.++.... +|+.+.|++.|++.|.
T Consensus 353 ~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 353 DTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred hhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 7665555555544 9999999999999993
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=243.61 Aligned_cols=335 Identities=24% Similarity=0.287 Sum_probs=269.7
Q ss_pred HHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Q 011565 55 AVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF 134 (483)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (483)
..+..+...++.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 34455666777788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHH
Q 011565 135 SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPC 210 (483)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~ 210 (483)
+++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++ ..+||+.+++.++..
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988877 457999999988777
Q ss_pred HHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHh
Q 011565 211 AVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGL 290 (483)
Q Consensus 211 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (483)
++..+...+++ | ..+...+...+
T Consensus 164 ~~~~~~~~~~~--~-------------------------------------------------------~~~~~~~~~~~ 186 (352)
T cd06174 164 LLLALLLLFLL--R-------------------------------------------------------LLLLLALAFFL 186 (352)
T ss_pred HHHHHHHHHHH--H-------------------------------------------------------HHHHHHHHHHH
Confidence 76555444332 1 11122222222
Q ss_pred hhhhhccchhhhHHhHHHHHHHc-CCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCcc-chhhHhHHHHHHHHHHHHH
Q 011565 291 MVIQQFGGINAIAFYAANIFQTA-GLSP---STGTISYALLQVVVTFFNIIMIDRAGRKP-LLLFAATGLLLGCLLLAAA 365 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 365 (483)
... .......+.+.+.++. +.+. +.......++.+++.++.+++.||++||+ .+..+..+..++...+...
T Consensus 187 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 187 LSF----GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHh----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 222 2344445555555443 4443 45556667888899999999999999999 8888888777777766653
Q ss_pred HHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhh
Q 011565 366 FFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSS 444 (483)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~ 444 (483)
.+.........+.+.+.+...+...++..|..|+++|++..|+.+....+|..++|.+.+.+.+ .+.
T Consensus 263 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~ 330 (352)
T cd06174 263 ------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY 330 (352)
T ss_pred ------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 3345566667777777777888889999999999999999999999999999999999999987 566
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 011565 445 YGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (483)
...+.+.+++.+++.+..
T Consensus 331 ~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 331 GGVFLILAALALLAALLL 348 (352)
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 666777777666665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=245.10 Aligned_cols=358 Identities=16% Similarity=0.130 Sum_probs=257.8
Q ss_pred HhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHhhhcccc
Q 011565 77 REDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE--GALSLDLGRLATGYGMGI 154 (483)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 154 (483)
..++++|++|.+++.+++..|+.+++++.|++.||+|-|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999998875 566789999999999999
Q ss_pred cccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----c-chhHHHHHHhHHHHHHHHHH-hhcCCCChhHHH
Q 011565 155 FSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----V-ATWRTLALVGVIPCAVLLLG-LFLIPESPRWLA 228 (483)
Q Consensus 155 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~-~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~ 228 (483)
.+|+...+...|.|++||++..++...+..+|.+++..+++ . +||++.|++.++.+++..++ +++..|+|...
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h- 223 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH- 223 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC-
Confidence 99999999999999999999999999999999888776665 3 89999999999998886655 55666777531
Q ss_pred hhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHH--ccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhH
Q 011565 229 KIGKHEEFEAALQKLRGKDADISQEATEIQEYIETL--ERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYA 306 (483)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (483)
+.-..+|.+ .+++...++ ++..+.+++++++++.+|...+..+...........+.|.|+
T Consensus 224 ~~is~~El~------------------~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~ 285 (466)
T KOG2532|consen 224 PNISEKELK------------------YIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYL 285 (466)
T ss_pred CCCCHHHHH------------------HHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 111111111 111111111 122577899999999888877777777666555555556665
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCc---------cchhhHhHHHHHHHHHHHHHHHHHhcCCcccc
Q 011565 307 ANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRK---------PLLLFAATGLLLGCLLLAAAFFLKTYGLALES 377 (483)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (483)
.++++..-.+.+....+..+...+..+++|.++||..+| ..-.++....++.++.+.+. ...
T Consensus 286 ~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~---------~~~ 356 (466)
T KOG2532|consen 286 KEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT---------SDE 356 (466)
T ss_pred HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec---------CCC
Confidence 555543333457888888899999999999999998663 11123333333333333332 111
Q ss_pred cchHHHHHHHHHHHHhhcccc-cchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHH
Q 011565 378 VPALTLAGVLVYIGSFSSGMG-ATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET----WSSYGTFLLYA 452 (483)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~----~~~~~~~~~~~ 452 (483)
.. .....++.......+.. +....-..+. .+++.+..+|+.+....+.++++|.+.|.+.. ..+...|++.+
T Consensus 357 ~~--~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a 433 (466)
T KOG2532|consen 357 HR--LLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAA 433 (466)
T ss_pred cc--hHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHH
Confidence 22 22222222223333333 3333333333 45888999999999999999999999999883 35566777777
Q ss_pred HHHHHHHHHHHhc
Q 011565 453 AVNILGIVFITTV 465 (483)
Q Consensus 453 ~~~~~~~~~~~~~ 465 (483)
++.+++.++..++
T Consensus 434 ~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 434 GILIVGNIIFLFF 446 (466)
T ss_pred HHHHHhchheeEe
Confidence 7777776555444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=244.64 Aligned_cols=376 Identities=12% Similarity=0.082 Sum_probs=249.6
Q ss_pred cCchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-----chhH
Q 011565 42 KDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI-----GRKG 116 (483)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~ 116 (483)
++.++++...+..+++ ..+.......+.+|...++.|.+.++++.+ +.....+ ++.+++|+++||+ |||+
T Consensus 7 ~~~~~~~~~~~~~l~~---~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr 81 (491)
T PRK11010 7 RIFQQPNSAILLILGF---ASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRR 81 (491)
T ss_pred HHHcccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCch
Confidence 4444555554444443 344455567788888999999999999997 4444444 6899999999999 9988
Q ss_pred H-HHHHHHHHHHHHHHHHHh---hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHH
Q 011565 117 A-MRVSSFVCIAGWLAIYFS---EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFI 192 (483)
Q Consensus 117 ~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~ 192 (483)
. +..+.++.+++...+++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.
T Consensus 82 ~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~ 161 (491)
T PRK11010 82 GWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG 161 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5 667878787887777775 478889999999999999999999999999999999999999999999999888875
Q ss_pred hhc-----cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccC
Q 011565 193 IGT-----VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERL 267 (483)
Q Consensus 193 l~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (483)
+.. ..|||..|++.++..++..+..+++||+++.. +++++ . ++.
T Consensus 162 l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~----------------~------------~~~ 210 (491)
T PRK11010 162 LALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKT----------------L------------EQA 210 (491)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccc----------------h------------hhh
Confidence 544 35999999998877777666655678864310 00000 0 000
Q ss_pred chhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHH----HHHHHHHHHHHHHHHhhcC
Q 011565 268 PKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISY----ALLQVVVTFFNIIMIDRAG 343 (483)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~d~~~ 343 (483)
...++++.++++..+.......+..........+.+.| +.+..|.+........ .++.+++.+++|+++||++
T Consensus 211 ~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~---l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g 287 (491)
T PRK11010 211 VVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTF---LIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLS 287 (491)
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12235566666665554444433333322222223333 2234577765443332 3577799999999999999
Q ss_pred CccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHH
Q 011565 344 RKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTL 423 (483)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 423 (483)
+|+.+..+..+..+..+.+..... . ..+...+....++.....+...+...++..+..+++.+++..|+.+.
T Consensus 288 ~~~~l~i~~~l~~l~~l~~~~l~~-------~-~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s 359 (491)
T PRK11010 288 LFRALMIFGILQGVSNAGYWLLSI-------T-DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSA 359 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 988776655544444333322110 0 01222222222222222222224456777888898899999999999
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHh
Q 011565 424 VNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITT 464 (483)
Q Consensus 424 ~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 464 (483)
...+|..+++.+.|++.| .|+...|.+.+++++.+.+....
T Consensus 360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 55555566666666665554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=244.57 Aligned_cols=334 Identities=17% Similarity=0.147 Sum_probs=223.4
Q ss_pred hhhhcccccccCcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh-
Q 011565 59 SYSFGTGVGYSSPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE- 136 (483)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~- 136 (483)
.+..........+..|. +++++|+|+.+.+++.+.+.+++++++++.|+++||+|||+.++++.++.+++.+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~ 89 (366)
T TIGR00886 10 FFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ 89 (366)
T ss_pred HHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445567888884 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhh----c----------cchhHHH
Q 011565 137 GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG----T----------VATWRTL 202 (483)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~----~----------~~~wr~~ 202 (483)
+++.+++.|+++|++.+ ..+....++.|++|+++|++++++......+|..+++.++ . ..+||+.
T Consensus 90 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~ 168 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWA 168 (366)
T ss_pred hHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999999999965 4566788999999999999999998865555555554443 2 2379999
Q ss_pred HHH-hHHHHHH-HHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCC
Q 011565 203 ALV-GVIPCAV-LLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRY 280 (483)
Q Consensus 203 f~~-~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (483)
|++ .++...+ .++.+.+.+|+|+.. ++.++.. ....... .++......++.++++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~--------------~~~~~~~~~~~~~~~~~ 226 (366)
T TIGR00886 169 FVIVPAGILLLPALLIFFVGADTPPGK---PATGKLS-----FKGARWS--------------VGTGALGDQLKVFRDRH 226 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCccc---ccchhcc-----ccccccc--------------ccchhHHHHHHHHhccc
Confidence 944 3444433 444456667665311 0000000 0000000 00001113455677777
Q ss_pred cchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHH
Q 011565 281 LHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLL 357 (483)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 357 (483)
.+...+...+..........+.+.|..+. .+.+. +.......+..++++++.+++.||+++|+.+..+......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 303 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQ---FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAM 303 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHH
Confidence 66655554444443333333344443332 35544 3445556777889999999999999999887777665555
Q ss_pred HHHHHHHHHHHHhcCCccccc-chHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHH
Q 011565 358 GCLLLAAAFFLKTYGLALESV-PALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFG 428 (483)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 428 (483)
+..++.... ... +.........+.....+...+..+....+..| +++|+++|+.+..+++|
T Consensus 304 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 304 GAFLVVLGL---------VSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHhcC---------CCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 554444321 111 23333333333444444445566677788877 68999999999888765
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=235.68 Aligned_cols=349 Identities=12% Similarity=0.055 Sum_probs=212.8
Q ss_pred hcccccccCcchHH-HHhhhcCchhHHHHHHHHHHH-HHHHHHHhHHHhhhhhchhHHH-HHHHHHHHHHHHHHHHhhch
Q 011565 62 FGTGVGYSSPTQNA-IREDLSLSLAEYSVFGSILTF-GAMIGAITSGPIADFIGRKGAM-RVSSFVCIAGWLAIYFSEGA 138 (483)
Q Consensus 62 ~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~~~ 138 (483)
.+.......|.+|. +.+++|+++++.|++.+...+ ++.++.++.|+ +||+||||.+ ..+.++.+++..+.++++++
T Consensus 27 ~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 105 (393)
T PRK15011 27 TGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNY 105 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33344445676664 678999999999999876655 55555555555 9999999875 55667677888888999999
Q ss_pred hHHHHHHHHhhhcccccccccchhhhcccCccch--hhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHH
Q 011565 139 LSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELR--GALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAV 212 (483)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~ 212 (483)
+.+++.+.+.|...+...|...+++.|+.++++| +...++.+.+.++|.+++|.+++ ..|||..|++.++..++
T Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~ 185 (393)
T PRK15011 106 FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIV 185 (393)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 9887666555544556788888888888776655 34557777778888888877775 56999999998877666
Q ss_pred HH-HHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcC-CcchHHHHHHh
Q 011565 213 LL-LGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKR-YLHSVTIGVGL 290 (483)
Q Consensus 213 ~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 290 (483)
.. +.++++||+++. +++.++ + .+ ...+++ ..+.......+
T Consensus 186 ~~~~~~~~~~~~~~~---~~~~~~-----------~-----------------~~-------~~~~~~~~~~~~~~~~~~ 227 (393)
T PRK15011 186 CGVMVWLFLPSMRKE---LPLATG-----------T-----------------LE-------APRRNRRDTLLLFVICTL 227 (393)
T ss_pred HHHHHHhhcCccCCC---Cccccc-----------c-----------------cc-------ccccccccHHHHHHHHHH
Confidence 44 446667876431 000000 0 00 000111 11111122222
Q ss_pred hhhhhccchhhhHHhHHHHHH-HcCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHH
Q 011565 291 MVIQQFGGINAIAFYAANIFQ-TAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAF 366 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (483)
.... ......+.|.+.+ ..+.+... ......+..+++.++.|+++||++||+.+..+.....+.+..+...
T Consensus 228 ~~~~----~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~- 302 (393)
T PRK15011 228 MWGT----NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA- 302 (393)
T ss_pred HHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-
Confidence 2221 2222233444432 33555433 3333345567788999999999999987766554444333222111
Q ss_pred HHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhh
Q 011565 367 FLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSY 445 (483)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~ 445 (483)
.+........++.+...+...+....+..|..|+ +++++.++++...++|..++|.+.|.+.+ .++.
T Consensus 303 -----------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~ 370 (393)
T PRK15011 303 -----------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYH 370 (393)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1122222222222222222223345667788885 59999999999999999999999999998 5555
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 011565 446 GTFLLYAAVNILGIVFITTVVP 467 (483)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
..+.+.+++.+++.+ ..+..|
T Consensus 371 ~~~~~~~~~~~~~~~-~~~~~~ 391 (393)
T PRK15011 371 AVFWFALVMIIATLF-CLLRIK 391 (393)
T ss_pred HHHHHHHHHHHHHHH-HHHhhc
Confidence 555555555555443 334444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=237.12 Aligned_cols=350 Identities=12% Similarity=0.017 Sum_probs=249.8
Q ss_pred HhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHH----HHHHHHHHHHHHHH
Q 011565 57 SGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAM----RVSSFVCIAGWLAI 132 (483)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~----~~~~~~~~~~~~~~ 132 (483)
+..+......+...|.+|.+.+|+|.|.+++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence 34455555667889999999999999999999999999999999999999999999985433 233222222 344
Q ss_pred HHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHH
Q 011565 133 YFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVI 208 (483)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~ 208 (483)
..+++++.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|.+++ ..|||..|++.+.
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~ 166 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA 166 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 5678999999999999999988899988887665 467888899888888888888887766 5699999988655
Q ss_pred HHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHH
Q 011565 209 PCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGV 288 (483)
Q Consensus 209 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (483)
..++.++.....|+.++. ++.++ ++..+..+.++++|+|.++...+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~----~~~~~----------------------------~~~~~~~~~~~~l~~~~~~~~l~~~ 214 (382)
T TIGR00902 167 GLAFMLIGFLIKPTIPPK----DAIPE----------------------------DESQGDSAFIALLKNPMNLRFLAAV 214 (382)
T ss_pred HHHHHHHHHHcCCCCCCC----ccccc----------------------------cccccchhHHHHHcChHHHHHHHHH
Confidence 433333333333332210 00000 0011123456788888877776666
Q ss_pred HhhhhhhccchhhhHHhHHHHHHHcCCCCchHH---HHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHH
Q 011565 289 GLMVIQQFGGINAIAFYAANIFQTAGLSPSTGT---ISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAA 365 (483)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (483)
++.......... +.+.+.++.|.+..... ....+..+++.+..+++.||+++|+.+.++.+...+...++...
T Consensus 215 ~l~~~~~~~~~~----~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T TIGR00902 215 CLIQGAHAAYYG----FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI 290 (382)
T ss_pred HHHHHHHHHHHH----HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 665554443333 44444455677764443 33455666788889999999999999988888888887766553
Q ss_pred HHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 011565 366 FFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTL-VNWFGAWAISYTFNFLETWSS 444 (483)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~g~~~~~~~ 444 (483)
.+.+.++...++.+...+...+....++.+. |++.+++..++++. ...+|..++|.+.|++.|.-+
T Consensus 291 ------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 291 ------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555566677777777777777888887 88899999999874 567999999999999999434
Q ss_pred hHHHHHHHHHHHHHH
Q 011565 445 YGTFLLYAAVNILGI 459 (483)
Q Consensus 445 ~~~~~~~~~~~~~~~ 459 (483)
...++..+++.+++.
T Consensus 358 ~~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 358 AGTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777776666553
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=235.33 Aligned_cols=361 Identities=14% Similarity=0.064 Sum_probs=225.8
Q ss_pred cccCcchH-HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHH---HHhhc-----
Q 011565 67 GYSSPTQN-AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAI---YFSEG----- 137 (483)
Q Consensus 67 ~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~----- 137 (483)
+...|.+| .+.+++|+++.+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++.... ..++.
T Consensus 27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (420)
T PRK09528 27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNI 106 (420)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666 4555699999999999999999999999999999999999999988766655543322 11111
Q ss_pred hhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc---cchhHHHHHHhHHHHHHHH
Q 011565 138 ALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT---VATWRTLALVGVIPCAVLL 214 (483)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~---~~~wr~~f~~~~~~~~~~~ 214 (483)
....++++++.|.+.....+....+..+ . .+++++.++......++|..+++.+++ ..+|++.|++.++.+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~ 184 (420)
T PRK09528 107 LLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILL 184 (420)
T ss_pred HHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHH
Confidence 1112333444444333333333333222 2 345566777777777777777777766 3489999999887777665
Q ss_pred HHhhcC-CCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhh
Q 011565 215 LGLFLI-PESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVI 293 (483)
Q Consensus 215 ~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (483)
+..++. +|+++.... .+.++ +++++.+..+.++.+|++.++...+.......
T Consensus 185 ~~~~~~~~~~~~~~~~-~~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~ 237 (420)
T PRK09528 185 VLLFFAKPDAPSTAKV-ANALG--------------------------ANASAVSLKDALALLKLPKFWFLVLYVIGVAC 237 (420)
T ss_pred HHHhcccccccchhhh-ccchh--------------------------cccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence 554444 333221000 00000 00011122345567778877665554433333
Q ss_pred hhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHh
Q 011565 294 QQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKT 370 (483)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (483)
.........+.|.....+..+.+.. .......+...++.++.|++.||+++|+.+..+..+..++..++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~----- 312 (420)
T PRK09528 238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA----- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----
Confidence 3333333456666655544344432 33444556677899999999999999999888777777766665542
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHH-HHHHHHHHHHHHHHHHHHHHh-hhhhHHH
Q 011565 371 YGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSL-TTLVNWFGAWAISYTFNFLET-WSSYGTF 448 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~~~~-~~~~~~~ 448 (483)
.+.+.+.....+.+.......+....++.|.+|++.+++..+. .++...+|.+++|.+.|++.| .++...+
T Consensus 313 -------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f 385 (420)
T PRK09528 313 -------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTY 385 (420)
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence 2233333444444444433344455777888899999888766 677789999999999999999 5666777
Q ss_pred HHHHHHHHHHHHHHHhcccC
Q 011565 449 LLYAAVNILGIVFITTVVPE 468 (483)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~ 468 (483)
...+++.++..++.+...++
T Consensus 386 ~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 386 LILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77777776666555554443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=234.66 Aligned_cols=366 Identities=13% Similarity=0.027 Sum_probs=240.0
Q ss_pred cccccccCc-chHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhch-hHHHHHHHHHHHHHHHHHHHhhchhH
Q 011565 63 GTGVGYSSP-TQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGR-KGAMRVSSFVCIAGWLAIYFSEGALS 140 (483)
Q Consensus 63 ~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (483)
....+...| ..+.+.+++|++..|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.
T Consensus 15 ~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (418)
T TIGR00889 15 WFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAG 94 (418)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 334444444 4446778899999999999999999999999999999999965 77888889999899999999999999
Q ss_pred HHHHHHHhhhcccccccccchhhh--------cccCccchhhHHhHHHHHHHHHHHHHHHhhccchhHHHHHHhHHHHHH
Q 011565 141 LDLGRLATGYGMGIFSYVVPVFTA--------EIAPKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAV 212 (483)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~~wr~~f~~~~~~~~~ 212 (483)
+++.|++.|++.+...+...++.. |......|.+..|. .++.+|+.+++.+.....|+. |++.++..++
T Consensus 95 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~--lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~ 171 (418)
T TIGR00889 95 MFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT--IGFIAAMWAVSLLDIELSNIQ-LYITAGSSAL 171 (418)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh--HHHHHHHHHHHHhcccchhHH-HHHHHHHHHH
Confidence 999999999987777666555432 22222334455542 455555555555533334553 5555555555
Q ss_pred HHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhh
Q 011565 213 LLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMV 292 (483)
Q Consensus 213 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (483)
..+..+++||+|+. +++++. + .++..+.+.++++|++.++...+..++..
T Consensus 172 ~~~~~~~~~e~~~~---~~~~~~-------------~--------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 221 (418)
T TIGR00889 172 LGVFALTLPDIPVA---KSTAKM-------------S--------------IKVMLGLDAFILFKNKRMAIFFFFSMLLG 221 (418)
T ss_pred HHHHHhcCCCCCCC---cccccc-------------C--------------HHHHhhhhHHHHhcCCCeeeHHHHHHHHH
Confidence 44556678887531 000000 0 00001112345677887766655555543
Q ss_pred hhhccchhhhHHhHHHHHHHcCCCC-----------chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHH
Q 011565 293 IQQFGGINAIAFYAANIFQTAGLSP-----------STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLL 361 (483)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 361 (483)
.... ....+.+.+.++.+.++ +.......+..+++.+..+++.||+|+|+.+..+.++..++..+
T Consensus 222 ~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l 297 (418)
T TIGR00889 222 APLQ----ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGF 297 (418)
T ss_pred hHHH----HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3221 22233344444334221 34444556677788999999999999999998888877776555
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHH-HHHHHHHHHHHHHHHHHH
Q 011565 362 LAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTT-LVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~~~ 440 (483)
+.... ........++...++.+...+...+....++.|.+|++.|+++.|+.+ ....+|.+++|.+.|++.
T Consensus 298 ~~~~~--------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 298 FAYGD--------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred HHHcC--------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54320 000112233334445555544555666788899999999999999997 567899999999999998
Q ss_pred hh-h------hhHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 011565 441 TW-S------SYGTFLLYAAVNILGIVFITTVVPETKGRT 473 (483)
Q Consensus 441 ~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (483)
+. + +...+.+.+++.++++++.+++.+|++++-
T Consensus 370 ~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 370 EKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 83 2 345666777777777777777777765543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=232.18 Aligned_cols=325 Identities=16% Similarity=0.146 Sum_probs=230.5
Q ss_pred hcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHH
Q 011565 62 FGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSL 141 (483)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (483)
.........|.+|.+.+|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+.+ .+++++.+
T Consensus 12 ~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l 90 (355)
T TIGR00896 12 LRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL 90 (355)
T ss_pred ccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 33344667899999999999999999999999999999999999999999999999999999988888887 78899999
Q ss_pred HHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cc--hhHHHHHHhHHHHHHHHH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VA--TWRTLALVGVIPCAVLLL 215 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~--~wr~~f~~~~~~~~~~~~ 215 (483)
++.|++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+.. .. +||+.|.+.++..++...
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999888888889999886 68999999999988888888876654 22 399998876654443322
Q ss_pred HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhh
Q 011565 216 GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQ 295 (483)
Q Consensus 216 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (483)
.++|+.++ +++.+ ++..+...++.+|++..+...+...+.....
T Consensus 170 --~~~~~~~~----~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (355)
T TIGR00896 170 --AWIPQVRR----RVAAN------------------------------QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLY 213 (355)
T ss_pred --HHhhhhcc----ccCCC------------------------------CCCCCCCCchhhcCHhHHHHHHHHHHHHHHH
Confidence 23344321 00000 0001122345666666655444434333333
Q ss_pred ccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcC-CccchhhHhHHHHHHHHHHHHHHHHHhc
Q 011565 296 FGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAG-RKPLLLFAATGLLLGCLLLAAAFFLKTY 371 (483)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (483)
. ....++|.+.++.+.+. +.......++.++++++.|++.||++ ||+.+..+..+..++.+.+....
T Consensus 214 ~----~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~----- 284 (355)
T TIGR00896 214 Y----SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP----- 284 (355)
T ss_pred H----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----
Confidence 2 33445555555556654 34555667788899999999999995 55566666666666655444321
Q ss_pred CCcccccchHHHHHHHHHHHHhhcccccchhhhccccC-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 372 GLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIF-PINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
...... ...+.+.+.+...+...+...+.. +++.++...++.+...+++..++|.+.|++.|
T Consensus 285 ------~~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 285 ------MHGLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred ------hhHHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 234455555555666555555444 45677899999999999999999999999988
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=228.15 Aligned_cols=346 Identities=13% Similarity=0.020 Sum_probs=231.7
Q ss_pred hhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchh----HHHHHHHHHHHHHHHHHHHh
Q 011565 60 YSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRK----GAMRVSSFVCIAGWLAIYFS 135 (483)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr----~~~~~~~~~~~~~~~~~~~~ 135 (483)
+......+...|.+|.+.+|+|.|.+++|++.+++.++..++++++|+++||+||| +.+.++..+. .......+
T Consensus 14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGA 91 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhc
Confidence 33344567788999999999999999999999999999999999999999999984 3333322222 22334456
Q ss_pred hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHH
Q 011565 136 EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCA 211 (483)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~ 211 (483)
+++|.+++.|++.|++.+...|...+++.++ +++|+++.+......++|..+||.+++ .+|||..|++.++..+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~ 169 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVA 169 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 8899999999999999988899888887776 345677777777666777777777666 5799999988776555
Q ss_pred HHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhh
Q 011565 212 VLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLM 291 (483)
Q Consensus 212 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (483)
+..+..++.||.++ +++.++ ..++...++++++|++.++...+..++.
T Consensus 170 ~~~~~~~~~~~~~~----~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 217 (382)
T PRK11128 170 SMLLGQLLRPTIMP----QGESRQ----------------------------QESAGWPAWKALLKEPTVWRFLLCVSLL 217 (382)
T ss_pred HHHHHHHccCCCCC----cccccc----------------------------ccccccchHHHHHcChhHHHHHHHHHHH
Confidence 44444444555321 000000 0011134567888888887766655555
Q ss_pred hhhhccchhhhHHhHHHHHHHcCCCCchHHH---HHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHH
Q 011565 292 VIQQFGGINAIAFYAANIFQTAGLSPSTGTI---SYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFL 368 (483)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (483)
...........+. +.++.|.+...... ...+..++..++.+++.||+++|+.+..+....+++.+.+...
T Consensus 218 ~~~~~~~~~~~~~----~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--- 290 (382)
T PRK11128 218 QGSHAAYYGFSAI----YWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--- 290 (382)
T ss_pred HHHhHhHHHHHHH----HHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh---
Confidence 4443333333333 33445666543333 3455666777889999999999999888887777766555432
Q ss_pred HhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHH-HHHHHHHHHHHHHHHHHHhhhhhHH
Q 011565 369 KTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTT-LVNWFGAWAISYTFNFLETWSSYGT 447 (483)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~~~~~~~~~~ 447 (483)
.+.+.++...++.+...+...+....+..+. +++++++..++.+ .....|..++|.+.|.+.|..+...
T Consensus 291 ---------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~ 360 (382)
T PRK11128 291 ---------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGV 360 (382)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 2333444445555555454555666676676 5566788888887 4456788999999999999433445
Q ss_pred HHHHHHHHHHH
Q 011565 448 FLLYAAVNILG 458 (483)
Q Consensus 448 ~~~~~~~~~~~ 458 (483)
++..+++.+++
T Consensus 361 ~~~~~~~~~~~ 371 (382)
T PRK11128 361 FWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=225.11 Aligned_cols=359 Identities=14% Similarity=0.075 Sum_probs=230.7
Q ss_pred ccccccCcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHH---HHh----
Q 011565 64 TGVGYSSPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAI---YFS---- 135 (483)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~---- 135 (483)
...+...|.+|. +.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++.... .+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (396)
T TIGR00882 16 FIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ 95 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344456677775 456789999999999999999999999999999999999999988777665544332 112
Q ss_pred -hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc---cchhHHHHHHhHHHHH
Q 011565 136 -EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT---VATWRTLALVGVIPCA 211 (483)
Q Consensus 136 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~---~~~wr~~f~~~~~~~~ 211 (483)
+.+..+++.|++.|++.+...+....+..|..+ +++...+......++|..+++.+++ ..+||+.|++.++..+
T Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~ 173 (396)
T TIGR00882 96 SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFAL 173 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHH
Confidence 123345677899999888888888777766432 3344555555666666666666665 4599999999887777
Q ss_pred HHHHHh-hcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHh
Q 011565 212 VLLLGL-FLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGL 290 (483)
Q Consensus 212 ~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (483)
+..+.. ...||+|+.. +.++. . + .+.++.+..+.++++|++.++...+....
T Consensus 174 ~~~~~~~~~~~~~~~~~----~~~~~-------~-~---------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 226 (396)
T TIGR00882 174 ILMLLLMFAKPKAPSSA----TVANA-------L-G---------------ANASAFSLKLALELFRQRKFWMFVLYVVG 226 (396)
T ss_pred HHHHHHHHhCCCCchhh----hhhcc-------c-c---------------cccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence 755443 3344443210 00000 0 0 00011223456778888876655444333
Q ss_pred hhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHH
Q 011565 291 MVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFF 367 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (483)
..........+.+.|.+...+..+.+. +.......+...++.+..+++.||+++|+.+.++..+.++...+....
T Consensus 227 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-- 304 (396)
T TIGR00882 227 VACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-- 304 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--
Confidence 333222233345556555543323333 233344455667788999999999999999888877776655544332
Q ss_pred HHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHH-HHHHHHHHHHHHHHHHHHHHh-hhhh
Q 011565 368 LKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSL-TTLVNWFGAWAISYTFNFLET-WSSY 445 (483)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~~~~-~~~~ 445 (483)
.+.+.+....++.+............+..+..|++.+++..+. .+....+|+.+++.+.|++.| .++.
T Consensus 305 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~ 374 (396)
T TIGR00882 305 ----------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQ 374 (396)
T ss_pred ----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccH
Confidence 2233333334444443322223344566777788888887776 678899999999999999999 6777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011565 446 GTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~ 463 (483)
..+.+.+++.++..+...
T Consensus 375 ~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 375 GAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777766665543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=224.09 Aligned_cols=358 Identities=15% Similarity=0.087 Sum_probs=240.0
Q ss_pred hhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-----chhH-HHHHHHHHHHHHHHH
Q 011565 58 GSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI-----GRKG-AMRVSSFVCIAGWLA 131 (483)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~-~~~~~~~~~~~~~~~ 131 (483)
.++..+...+.....+|.+.++.|+|.+++|++..+... .+..+++|+++||+ |||| .+.++.++.+++..+
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 345566677778888998999999999999999777775 69999999999999 8875 788888888888888
Q ss_pred HHHh---hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-----cchhHHHH
Q 011565 132 IYFS---EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT-----VATWRTLA 203 (483)
Q Consensus 132 ~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~-----~~~wr~~f 203 (483)
.++. .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|..+++.++. ..|||..|
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f 164 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY 164 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence 8887 357778888888888888889999999999999999999999999999999888877554 24999999
Q ss_pred HHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcch
Q 011565 204 LVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHS 283 (483)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (483)
++.++..++..+..+++||+++. +++.++. +++.+.++++++|+|.++.
T Consensus 165 ~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~ 213 (402)
T PRK11902 165 LLMAGLMLAGALTTLWAPEPEVP---ARPPRSL----------------------------GEAVVGPLRDFFSRRGAWA 213 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCccc---ccccchh----------------------------HHHHHHHHHHHHhCcCHHH
Confidence 99887776655556667776431 0000000 0011234667788887776
Q ss_pred HHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHH---H-HHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHH
Q 011565 284 VTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISY---A-LLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGC 359 (483)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (483)
..+...+........... ..+...+..|.+........ + ++.+++.++++++.||+++|+.+..+..+..+..
T Consensus 214 ~l~~~~l~~~~~~~~~~~---~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 214 LLLLIVLYKLGDAFAGSL---STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN 290 (402)
T ss_pred HHHHHHHHHhHHHHHHHH---HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 655544444332211112 22223344577765554443 2 3467889999999999999988766665555444
Q ss_pred HHHHHHHHHHhcCCcccccchHHHHHHH----HHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHH
Q 011565 360 LLLAAAFFLKTYGLALESVPALTLAGVL----VYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYT 435 (483)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 435 (483)
+.+..... ...+.+.+.... +..+............++.+.+|.+ ..++.+....++..+++.+
T Consensus 291 l~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 291 LGYWVLAV--------TPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPT 358 (402)
T ss_pred HHHHHHHh--------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHH
Confidence 33322110 001222222222 2223333333445556666666644 4566666677788777778
Q ss_pred HHHHHh-hhhhHHHHHHHHHHHHHHHHHH
Q 011565 436 FNFLET-WSSYGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 436 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 463 (483)
.|.+.| .|+...+.+.+.+++++.++.+
T Consensus 359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 359 SGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 999988 6666666666666656544443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=209.33 Aligned_cols=354 Identities=17% Similarity=0.118 Sum_probs=270.9
Q ss_pred HHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHH
Q 011565 54 VAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY 133 (483)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 133 (483)
.+....++.++......+.+|.+++.|+++..|.+++..+++.+|.+.+++.|++.+|+|+|+.++.|+.++++++.++.
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 34444566677777889999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ---HhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhccc-------------
Q 011565 134 ---FSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVA------------- 197 (483)
Q Consensus 134 ---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~------------- 197 (483)
...++..++++-++.|.|.+.....++.+++...++++-.+.+++.+..+++|..++|++++.+
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence 5568899999999999999999999999999999998889999999999999999999887611
Q ss_pred ----------hhHHHHHHhHHHHHHHHHHhhc--CCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHc
Q 011565 198 ----------TWRTLALVGVIPCAVLLLGLFL--IPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLE 265 (483)
Q Consensus 198 ----------~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (483)
.||++|...+...++..+.... .|+.+.. +. +..
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-----~~-----------------------------~~~ 222 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA-----AP-----------------------------SLG 222 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----cc-----------------------------ccc
Confidence 3788888866666555444333 3443210 00 001
Q ss_pred cCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHHHHHhhc
Q 011565 266 RLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLS---PSTGTISYALLQVVVTFFNIIMIDRA 342 (483)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~ 342 (483)
+.+.....+++++|+.+.-.+..+++...+.....+++.|+.+. .|.+ +......+.++.++|++++.++.+|+
T Consensus 223 ~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~---~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~ 299 (422)
T COG0738 223 ASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL---LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI 299 (422)
T ss_pred ccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111567888999988888888888887777666666665554 3433 35666777888999999999999999
Q ss_pred CCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHH
Q 011565 343 GRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTT 422 (483)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 422 (483)
...+.+....++..+.++...+. .. ........+.+.+.+..+|..++...+..| ++ ....|...
T Consensus 300 ~~~k~Laf~a~~~ill~~~~~l~------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l 364 (422)
T COG0738 300 KPEKYLAFYALIAILLLLAVALI------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLL 364 (422)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceee
Confidence 99988887776655555555543 22 445555667788888889999999999998 33 34444555
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHH
Q 011565 423 LVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGI 459 (483)
Q Consensus 423 ~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 459 (483)
.+..+|+++.|++.|++.| .+....+......|.+..
T Consensus 365 ~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 365 VMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5678899999999999999 554545554455554444
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-29 Score=236.81 Aligned_cols=398 Identities=15% Similarity=0.126 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHH
Q 011565 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126 (483)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 126 (483)
+-|.+++..++......-....++...+.++++++-+.++++|+.++....+.+..++.+.+.||+|.|++.+.|.++.+
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 34555555544443333233444577888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhHHHH-HHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHH
Q 011565 127 AGWLAIYFSEGALSLDL-GRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRT 201 (483)
Q Consensus 127 ~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~ 201 (483)
++.++.+|++++|++++ .-++.|+|.|..+.....++..+| +|+|+.+.|+...+.++|..+-|.+.. .+|||+
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~ 201 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRG 201 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHH
Confidence 99999999999998855 578899999999999999999888 567999999999999999988887765 679999
Q ss_pred HHHHhHHHHHHHHHH-hhcCCCChhHHHh-hCCHHHHHHHH--------HHHhcCcccchH----HHHHHHHH-HHHHcc
Q 011565 202 LALVGVIPCAVLLLG-LFLIPESPRWLAK-IGKHEEFEAAL--------QKLRGKDADISQ----EATEIQEY-IETLER 266 (483)
Q Consensus 202 ~f~~~~~~~~~~~~~-~~~~~e~p~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~-~~~~~~ 266 (483)
.+++.+.+.+-.++. ...-|.+++.... ..+.+...... ++....+..... +....++. .+.+..
T Consensus 202 ~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (509)
T KOG2504|consen 202 ALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNS 281 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccccc
Confidence 999977777665555 4444433221101 00000000000 000000000000 00000000 000100
Q ss_pred Cchhhh----HHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHH
Q 011565 267 LPKARL----LDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMI 339 (483)
Q Consensus 267 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~ 339 (483)
..+... .++++++.++...+...+..+ .+.....+++.+.+..+.+. .....+.++..++++++.|++.
T Consensus 282 ~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~----g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~la 357 (509)
T KOG2504|consen 282 PLQAFLSMLDLSLLKDPKFLLLALSNLFAYL----GFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLA 357 (509)
T ss_pred chhhhhhhhhHHHHcCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhc
Confidence 112222 467777666554444444444 34455666677766667764 4556666888899999999999
Q ss_pred hhcCCccchh--hHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhh
Q 011565 340 DRAGRKPLLL--FAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVG 417 (483)
Q Consensus 340 d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 417 (483)
|+...++... ++.+..+++.+.+... .+...+...+++.+...+.........+.|+.+.++-..+
T Consensus 358 D~~~~~~~~~~~~~ll~~gl~~~~~p~~------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a 425 (509)
T KOG2504|consen 358 DKPGIRALVLFLLTLLIAGLARLFLPFA------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNA 425 (509)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchH
Confidence 9988544433 3444444444333332 5566777777788887777777777788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-hh-hhHHHHHHHHHHHHHHHH
Q 011565 418 GSLTTLVNWFGAWAISYTFNFLET-WS-SYGTFLLYAAVNILGIVF 461 (483)
Q Consensus 418 ~g~~~~~~~~g~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~~ 461 (483)
.|+...+..++..+||++.|++.| .+ +...+...+.+.++++.+
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence 999999999999999999999988 44 555555555555555543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=256.15 Aligned_cols=330 Identities=14% Similarity=0.062 Sum_probs=228.6
Q ss_pred cchHHHHhhhcCch--hHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHH---HHhhchhHHHHHH
Q 011565 71 PTQNAIREDLSLSL--AEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAI---YFSEGALSLDLGR 145 (483)
Q Consensus 71 ~~~~~i~~~~~~s~--~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r 145 (483)
...+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++. ..+++++.++++|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 110 (1146)
T PRK08633 31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVT 110 (1146)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 33445666676654 447999999999999999999999999999999999887766555544 3457899999999
Q ss_pred HHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhccc-------------hhHHHHHHhHH-HHH
Q 011565 146 LATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVA-------------TWRTLALVGVI-PCA 211 (483)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~-------------~wr~~f~~~~~-~~~ 211 (483)
+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+ +|++.+.+.++ ..+
T Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1146)
T PRK08633 111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAV 190 (1146)
T ss_pred HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887621 24444444333 333
Q ss_pred HHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhh
Q 011565 212 VLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLM 291 (483)
Q Consensus 212 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (483)
+.++..+.+||.|++...+.+.++ . . ..+.....++.+++++.++...+...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 191 LGLIFAYRLPKVPAAAPEVFDKKK-------------Y--L-----------FPKLLWRNLKLLRSDRVLWLAIIGLSYF 244 (1146)
T ss_pred HHHHHHhcCcCCCCCCcccccccc-------------c--c-----------cHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344455667877542111000000 0 0 0000122355566777666555544444
Q ss_pred hhhhccchhhhHHhHHHHHHHcCCCCc----hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHH
Q 011565 292 VIQQFGGINAIAFYAANIFQTAGLSPS----TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFF 367 (483)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (483)
.+........++.|.... .+.+.. .......++.+++.++.+++.||+++++.+.++.++.+++.+++...
T Consensus 245 ~~~~~~~~~~~~~~~~~~---~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-- 319 (1146)
T PRK08633 245 WFISQLAQANFPAYAKEV---LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-- 319 (1146)
T ss_pred HHHHHHHHHhhHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--
Confidence 443333333334443332 355443 44455577778899999999999998888877777666665555443
Q ss_pred HHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 368 LKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
.+.+...+..++.+++.+...+...+++.+..|++.||+++|+.+++..+|.++++.+.+.+..
T Consensus 320 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 320 ----------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444555555666666666677888999999999999999999999999888887776654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=226.33 Aligned_cols=386 Identities=13% Similarity=0.033 Sum_probs=243.1
Q ss_pred hHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh-hchhHHHHHHHHHHHHHHHHHHHhhchhH-HHHHHHHhhh
Q 011565 73 QNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF-IGRKGAMRVSSFVCIAGWLAIYFSEGALS-LDLGRLATGY 150 (483)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~ 150 (483)
...+.+++|++.++.+++.+.+.....+..+++|+++|| +||||+++++.++++++++.++++++... ++++|+++|+
T Consensus 38 ~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~i 117 (489)
T PRK10207 38 AVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAV 117 (489)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHh
Confidence 446788999999999999999999999999999999999 99999999999999999999999887555 4589999999
Q ss_pred cccccccccchhhhcccCcc--chhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCCCCh
Q 011565 151 GMGIFSYVVPVFTAEIAPKE--LRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIPESP 224 (483)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (483)
|.|...|...+++.|.+|++ +|++++++++.+.++|..+||.+++ ..|||+.|++.++..++.++.+...++..
T Consensus 118 g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 118 GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 99999999999999999877 4577888899898888888777665 67999999996554444444443333221
Q ss_pred hHHH--hhCC-HHHHHHHHH---------HH--hcCcccchHHHHH-H------HHHHHHHccCchhhhHHhhhcCCcch
Q 011565 225 RWLA--KIGK-HEEFEAALQ---------KL--RGKDADISQEATE-I------QEYIETLERLPKARLLDLFQKRYLHS 283 (483)
Q Consensus 225 ~~~~--~~~~-~~~~~~~~~---------~~--~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (483)
+... .+++ .|.....+. .. ...... ...... . .....++.+.+ +.+|++.+..
T Consensus 198 ~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~f~~~~~~~~-----~~~r~r~~~~ 271 (489)
T PRK10207 198 KDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVE-VANLVLIVLSIVVTIIFFREAFKLD-----KTGRNKMFVA 271 (489)
T ss_pred cccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHH
Confidence 1100 0011 111110000 00 000000 000000 0 00000011111 3344443322
Q ss_pred HHHH--HHhhhhhhccchhhhHHhHHHHHHHc--CCC--CchHHHHHHHHHHHHHHHHHHHHhhcCCccc-------hhh
Q 011565 284 VTIG--VGLMVIQQFGGINAIAFYAANIFQTA--GLS--PSTGTISYALLQVVVTFFNIIMIDRAGRKPL-------LLF 350 (483)
Q Consensus 284 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~~~ 350 (483)
..+. ..+.+..+......++.|.+...+.. |.. +........+..++..++.+++.||.++|+. +.+
T Consensus 272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~ 351 (489)
T PRK10207 272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTL 351 (489)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 1111 22233333333344455544322111 222 2333344456666778888999999998863 566
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHH
Q 011565 351 AATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAW 430 (483)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 430 (483)
+.++.+++++.+......... .....+.++++...++.+.+.....+...+++.+..|++.++.++|+.+....+|+.
T Consensus 352 G~~l~~~~~~~~~~~~~~~~~--~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~ 429 (489)
T PRK10207 352 GMFLCSLGFLTAAAAGMWFAD--AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL 429 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 777766665544322111110 011234566677788888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----------hhhhHHHHHHHHHHHHHHHHHHhcc
Q 011565 431 AISYTFNFLET-----------WSSYGTFLLYAAVNILGIVFITTVV 466 (483)
Q Consensus 431 ~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (483)
++..+...... ......|...++..+++.++.+...
T Consensus 430 lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 430 LGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred HHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888765421 1234455555655555555544433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=220.94 Aligned_cols=382 Identities=15% Similarity=0.104 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHH
Q 011565 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126 (483)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 126 (483)
+.+..+...++......+........++.+.+|+|- .....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..
T Consensus 41 ~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v 119 (599)
T PF06609_consen 41 RFIASFAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV 119 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 334334344444444444555566778899999994 5778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHH
Q 011565 127 AGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTL 202 (483)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~ 202 (483)
+|+++++.++|...++++..+.|+|.|... .....++|..|.|.|+...++......+....++.++. .-+|||.
T Consensus 120 vG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~ 198 (599)
T PF06609_consen 120 VGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI 198 (599)
T ss_pred hHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence 999999999999999999999999987665 45566899999999988777766655554444444443 5689999
Q ss_pred HHHhHHHHHHHHHH--hhcCCCChhHHHhhC-CHHHHHHHHHHH------------------hcCc-cc--chHHHHH--
Q 011565 203 ALVGVIPCAVLLLG--LFLIPESPRWLAKIG-KHEEFEAALQKL------------------RGKD-AD--ISQEATE-- 256 (483)
Q Consensus 203 f~~~~~~~~~~~~~--~~~~~e~p~~~~~~~-~~~~~~~~~~~~------------------~~~~-~~--~~~~~~~-- 256 (483)
|++.++...+.++. +++.|.+.+.++.++ ..++.-+.++.+ .+.. .+ .......
T Consensus 199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv 278 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV 278 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence 99988876664433 333333222111111 111111111111 0111 00 0000000
Q ss_pred -------HHHHHHHHc-cCchhhhHHhhhcC-CcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCC---CCchHHHHH
Q 011565 257 -------IQEYIETLE-RLPKARLLDLFQKR-YLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGL---SPSTGTISY 324 (483)
Q Consensus 257 -------~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 324 (483)
.--..|... .+++.-..+++|++ .+...+++.++....++......|.....++..... ..+....+.
T Consensus 279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~ 358 (599)
T PF06609_consen 279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPV 358 (599)
T ss_pred HHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhH
Confidence 001112211 12333445677764 333333333333333332222223332223322222 234566777
Q ss_pred HHHHHHHHHHHHHHHhhcCCccc-hhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhh
Q 011565 325 ALLQVVVTFFNIIMIDRAGRKPL-LLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWV 403 (483)
Q Consensus 325 ~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (483)
+++..++.++.+.+..+++|-|. +.++..++.+++.++... .+++. ...+...++.+++.+........
T Consensus 359 ~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~---------~~~n~-~~~i~~~~l~g~giG~~~~~~~~ 428 (599)
T PF06609_consen 359 GFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV---------RPDNK-NAAIAFLVLAGFGIGGILVPAIV 428 (599)
T ss_pred HHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc---------cCCCc-chHHHHHHHHHHhHHHHHHHHHH
Confidence 88888999999999998887544 456666666555555543 11122 22234444555555555555556
Q ss_pred hccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 404 LMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
.++-..|++..+++.|+...++.+|+.++..+...+.
T Consensus 429 ~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 429 IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6667789999999999999999999999998876654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-27 Score=250.94 Aligned_cols=336 Identities=11% Similarity=-0.017 Sum_probs=230.4
Q ss_pred HHHhhhcCch-hHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHH---HHHHHHHHHHHHHHhhchhHHHHHHHHhhh
Q 011565 75 AIREDLSLSL-AEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRV---SSFVCIAGWLAIYFSEGALSLDLGRLATGY 150 (483)
Q Consensus 75 ~i~~~~~~s~-~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (483)
.+..+.+.+. ...++..+++.+.+.++++++|+++||+|||+++.. +.+...+..+.+...++++.++++|+++|+
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi 120 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGI 120 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444433 457888999999999999999999999999997633 333333333444445899999999999999
Q ss_pred cccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCCCChhH
Q 011565 151 GMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIPESPRW 226 (483)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 226 (483)
+.+...|...+++.|++|+++|++++++.+++.++|.++||.+++ ..+|++.|+..++..++.++.++++|+++..
T Consensus 121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1140)
T PRK06814 121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA 200 (1140)
T ss_pred HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999999999999999999999999998887 5689999966666666666666777765421
Q ss_pred HHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhH
Q 011565 227 LAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYA 306 (483)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (483)
.++...+ . . . .+.....++.+.+++.++...+...+..+.......+++.|+
T Consensus 201 --~~~~~~~-~-------------~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 252 (1140)
T PRK06814 201 --APDLKID-R-------------N----I--------IRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA 252 (1140)
T ss_pred --CCCCeec-c-------------c----h--------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0000000 0 0 0 000122456677777777766666655555444444455554
Q ss_pred HHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCC--------cc
Q 011565 307 ANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGL--------AL 375 (483)
Q Consensus 307 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 375 (483)
...+ +.++ +......+++.+++.++.+++.++..+++.+..+.++..++.+.+.+......... ..
T Consensus 253 ~~~~---g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 329 (1140)
T PRK06814 253 KETL---GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFL 329 (1140)
T ss_pred HHHc---CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhh
Confidence 4433 4443 45556667888999999999998877766665555544444433332100000000 00
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
...+.+.+.+..++.+++.+...+...+++++..|++.+|+++|+.++...+|..+++.+.+.+.+
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 330 SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 002233444555556666666666778999999999999999999999999999999999998875
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=219.51 Aligned_cols=369 Identities=16% Similarity=0.120 Sum_probs=259.8
Q ss_pred cCchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHH
Q 011565 42 KDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVS 121 (483)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~ 121 (483)
++..+..|..-.+..++..+.. ..++-+..+..-|+...+++..+..+...+.+++.|.++||+.|||+++.+
T Consensus 9 ~~~Fr~lw~a~~iS~lG~~~~~-------va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~ 81 (524)
T PF05977_consen 9 NRNFRRLWIAQLISNLGDWMQT-------VALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILS 81 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 4455566666666666655544 334445667777999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-----hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-
Q 011565 122 SFVCIAGWLAIYFS-----EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT- 195 (483)
Q Consensus 122 ~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~- 195 (483)
.++.++..+..++. .+.|.+++.-++.|++.+...|...+++.|..|+++...+.++.+...++...+||.+++
T Consensus 82 ~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~ 161 (524)
T PF05977_consen 82 QLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI 161 (524)
T ss_pred HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 98877665555442 378889999999999999999999999999999999999999999988888888888777
Q ss_pred ---cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhh
Q 011565 196 ---VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARL 272 (483)
Q Consensus 196 ---~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (483)
..|-.+.|.+.++..++.++.....+..++ ++...++ ...+.-+.++
T Consensus 162 Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e---------------------------~~~~~l~~G~ 211 (524)
T PF05977_consen 162 LVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRE---------------------------RFFSALREGL 211 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchh---------------------------hhhhhHHHHH
Confidence 457788898887766665544444433211 0000000 0011112334
Q ss_pred HHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchh
Q 011565 273 LDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLL 349 (483)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 349 (483)
+-+.+++..+..++...+..+........+|.+.... .+.++ +......+++.++|.++.+++.+|+++++.+.
T Consensus 212 ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~---l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~ 288 (524)
T PF05977_consen 212 RYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV---LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVL 288 (524)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH---hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhH
Confidence 4444455544444333333332222223334443333 34444 45556668888999999999999999888888
Q ss_pred hHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHH
Q 011565 350 FAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGA 429 (483)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 429 (483)
.+.+..+++++.+.+. .+.+.....+++.|.+.........+..++..|++.||++.+++.+....+.
T Consensus 289 ~~~~~~a~~~~~lal~------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~ 356 (524)
T PF05977_consen 289 LASLLFALALLLLALS------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM 356 (524)
T ss_pred HHHHHHHHHHHHHhcc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH
Confidence 8877777766666553 3444455555666666666666677888999999999999999999999999
Q ss_pred HHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHH
Q 011565 430 WAISYTFNFLET-WSSYGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 430 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 462 (483)
.+|..+.|.+.+ .+....+.+.+++.+++.++.
T Consensus 357 ~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 357 PLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 555556555555444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-28 Score=212.48 Aligned_cols=343 Identities=13% Similarity=0.012 Sum_probs=240.9
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhccccccccc
Q 011565 80 LSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVV 159 (483)
Q Consensus 80 ~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 159 (483)
.+-+++++|++.+++.+...+.+++.|.+.||+|+|..+++|++.+...++++++.++++.+++.|.+||+|.+......
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccCccc-hhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHH
Q 011565 160 PVFTAEIAPKEL-RGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHE 234 (483)
Q Consensus 160 ~~~i~~~~~~~~-rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 234 (483)
.++++|.+|+++ |++++|+.-.+.++|..+||..++ ..|.+.+|.+.++++++-..+.+++-|..+ .+
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~-- 253 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MD-- 253 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cC--
Confidence 999999998665 799999999999999999999988 569999999999998886666444433211 00
Q ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcC
Q 011565 235 EFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAG 314 (483)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (483)
++...+..++++++++|..+................--.++.|..+.+...+
T Consensus 254 ----------------------------~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~ 305 (464)
T KOG3764|consen 254 ----------------------------PDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPG 305 (464)
T ss_pred ----------------------------ccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCC
Confidence 0012234557788888876654443333333322223334444443333334
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhh
Q 011565 315 LSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFS 394 (483)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (483)
...+...+...+...++..+.|.+.||++..+.+.....+..++..+.... ..+++ ..-+.......+..+...
T Consensus 306 w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP-~~~~~-----~~L~vp~~~l~~~i~~~d 379 (464)
T KOG3764|consen 306 WEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIP-FATSI-----AQLWVPNFGLGFGIGLAD 379 (464)
T ss_pred cceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhH-hhhhH-----HHHhhhhHHHHHHHHHHH
Confidence 456777888899999999999999999995444333333333332222221 11110 011111222222222233
Q ss_pred cccccchhhhccccCCCc---cchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHh
Q 011565 395 SGMGATPWVLMSEIFPIN---IKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITT 464 (483)
Q Consensus 395 ~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 464 (483)
....|.. .+..+....+ ..|.++++......+|.++||.++|.+.+ .|..+...+.+...++-+-++.+
T Consensus 380 asl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 380 ASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433 3344443333 67999999999999999999999999988 77777777777766666554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=216.82 Aligned_cols=404 Identities=13% Similarity=0.007 Sum_probs=249.1
Q ss_pred hhhcccccccCcchHHH-Hhh--hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh-hchhHHHHHHHHHHHHHHHHHHHh
Q 011565 60 YSFGTGVGYSSPTQNAI-RED--LSLSLAEYSVFGSILTFGAMIGAITSGPIADF-IGRKGAMRVSSFVCIAGWLAIYFS 135 (483)
Q Consensus 60 ~~~~~~~~~~~~~~~~i-~~~--~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~ 135 (483)
+...+......+.+|.+ .++ +|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.+++
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~ 99 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444455666655 445 89999999999999999999999999999999 899999999999999999999999
Q ss_pred hchhHHHHHHHHhhhcccccccccchhhhcccCccc---hhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHH
Q 011565 136 EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKEL---RGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVI 208 (483)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~ 208 (483)
++++.+++.|++.|+|.|...+...++++|++|+++ |+.+.++.+.+.++|..+|+.+++ ..+||+.|++.++
T Consensus 100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~ 179 (475)
T TIGR00924 100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV 179 (475)
T ss_pred ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999999999999999999999999999999998764 888999999999999999988876 4689999999776
Q ss_pred HHHHHHHHhhcCCC----ChhHHHhhCCHHHHHHHHHH--------------HhcCcccchHHHHH---H--HHHHHHHc
Q 011565 209 PCAVLLLGLFLIPE----SPRWLAKIGKHEEFEAALQK--------------LRGKDADISQEATE---I--QEYIETLE 265 (483)
Q Consensus 209 ~~~~~~~~~~~~~e----~p~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---~--~~~~~~~~ 265 (483)
..++..+.+++.++ .|+.. ++.+.++.+..... ....+......... . ........
T Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (475)
T TIGR00924 180 GMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLA 258 (475)
T ss_pred HHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444433332 21100 00000100000000 00000000000000 0 00000000
Q ss_pred cCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHc--CCC--CchHHHHHHHHHHHHHHHHHHHHhh
Q 011565 266 RLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTA--GLS--PSTGTISYALLQVVVTFFNIIMIDR 341 (483)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~g~l~d~ 341 (483)
.++.....+-.|......+++...+.+..+......++.+..+..+.. +.+ ++.......+..++..++..++..|
T Consensus 259 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~ 338 (475)
T TIGR00924 259 FKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTR 338 (475)
T ss_pred HhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 000000000011111122223333333333222333333333322111 111 3345555555555555554443333
Q ss_pred cCC-----ccch--hhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccc
Q 011565 342 AGR-----KPLL--LFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIK 414 (483)
Q Consensus 342 ~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 414 (483)
.+| +... .++.++.++++..+.+.....+ .....+.++++...++.+.+.....|...++..+..|++.|
T Consensus 339 l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~---~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~ 415 (475)
T TIGR00924 339 LGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFAD---AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLM 415 (475)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 333 3333 5566777766666654321111 01135677788888888899999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhccc
Q 011565 415 GVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVP 467 (483)
Q Consensus 415 ~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
|+.+|+......+|..+++.+.....+ .+....+...+..+++..++.++..|
T Consensus 416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887655 34455555666666655555544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=206.91 Aligned_cols=356 Identities=11% Similarity=0.085 Sum_probs=227.2
Q ss_pred ccccCcchHHHHhhhcCchhH-HHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011565 66 VGYSSPTQNAIREDLSLSLAE-YSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLG 144 (483)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~-~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (483)
........|.+.+|+|+|++| .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++..++.+++++++.+.+.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677899999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc---cchhHHHHHHh---HHHHHHHHHHhh
Q 011565 145 RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT---VATWRTLALVG---VIPCAVLLLGLF 218 (483)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~---~~~wr~~f~~~---~~~~~~~~~~~~ 218 (483)
|++.|++.|..+ ....++..|+|+++|+++.++...+..+|.+++++++. .+|||+.+.+. .....++++..+
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999988876 56898766553 333344566678
Q ss_pred cCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHH-HHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhcc
Q 011565 219 LIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATE-IQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFG 297 (483)
Q Consensus 219 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (483)
++|..++.+.-+++.+.......+.+....+...+..+ .+......-..-..++++..+++....-.+- +.....
T Consensus 201 ~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlW----wa~a~~ 276 (511)
T TIGR00806 201 FLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLW----WVFNSA 276 (511)
T ss_pred hCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHH----HHHHhh
Confidence 88866553322221110000000000000000000000 0000000011223445556666644332222 222223
Q ss_pred chhhhHHhHHHHHHHcCC-CC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCC
Q 011565 298 GINAIAFYAANIFQTAGL-SP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGL 373 (483)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (483)
++..+..|.+.+.+...- +. +..-.+..+.+.+..+..|++-.+..+...+.++.....-+.+++...
T Consensus 277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-------- 348 (511)
T TIGR00806 277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-------- 348 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh--------
Confidence 455667777776654422 22 233344445566677777877444433222222222222222222211
Q ss_pred cccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 011565 374 ALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTF 436 (483)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 436 (483)
...+.+...+..++.........++...-+++....+.-|...|+++++..+-..+-..+.
T Consensus 349 --~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 349 --QSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred --cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 1245555566666665555555566666666666767779999999988877776655443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=234.01 Aligned_cols=293 Identities=14% Similarity=0.118 Sum_probs=205.3
Q ss_pred HHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHh
Q 011565 56 VSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS 135 (483)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 135 (483)
++..+......+..++.++.++++|+++.++.|++.+.+.++++++.++.|+++||+|||+.+.++.++++++++++++.
T Consensus 39 ~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 39 TCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 34555555667888889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred h---------------------------------------------------chhHHHHHHHHhhhcccccccccchhhh
Q 011565 136 E---------------------------------------------------GALSLDLGRLATGYGMGIFSYVVPVFTA 164 (483)
Q Consensus 136 ~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (483)
+ .+..++++|+++|+|.+..++...+++.
T Consensus 119 hf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~ 198 (633)
T TIGR00805 119 HFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYID 198 (633)
T ss_pred HHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence 3 2456789999999999999999999999
Q ss_pred cccCccchhhHHhHHHHHHHHHHHHHHHhhcc----c----------------------hhHHHHHHhHHHHHHHHHHhh
Q 011565 165 EIAPKELRGALTSANQLLIVIGASTFFIIGTV----A----------------------TWRTLALVGVIPCAVLLLGLF 218 (483)
Q Consensus 165 ~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~----~----------------------~wr~~f~~~~~~~~~~~~~~~ 218 (483)
|++|+++|+++++++..+..+|+.+|+++++. + +||..|++.+++.++..+.++
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888761 1 277788887777777555556
Q ss_pred cCCCC-hhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhcc
Q 011565 219 LIPES-PRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFG 297 (483)
Q Consensus 219 ~~~e~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (483)
++|++ |+.. .+.+.+..++. ... .... +.. .......+.....++++++++.++...+..++.......
T Consensus 279 ~~p~~lp~~~-~~~~~~~~~~~--~~~-~~~~--~~~----~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~ 348 (633)
T TIGR00805 279 FFPKALPKEG-KRVNVDVHETE--KLE-KSED--KSR----KKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNG 348 (633)
T ss_pred hCccccCCcc-cccchhhhhhh--ccc-cccc--ccc----hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 66654 3210 00000000000 000 0000 000 000000111234567788998877766666666665544
Q ss_pred chhhhHHhHHHHHHHcCCCCchHHHHH---HH-HHHHHHHHHHHHHhhcCC--ccchhhHhHHHHHHHHH
Q 011565 298 GINAIAFYAANIFQTAGLSPSTGTISY---AL-LQVVVTFFNIIMIDRAGR--KPLLLFAATGLLLGCLL 361 (483)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~ 361 (483)
...++|.|+... .+.++....... .+ +.+++.+++|+++||++. |+.+.++.....++.++
T Consensus 349 ~~~~lP~yl~~~---~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 349 YITFLPKYLENQ---YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHH---cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 444444444433 366654444333 33 456889999999999884 45666666665555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=222.07 Aligned_cols=326 Identities=14% Similarity=0.074 Sum_probs=225.1
Q ss_pred hHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh----hchhH-HHHHHHHHHHHHHHHHHHhhc------hhHH
Q 011565 73 QNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF----IGRKG-AMRVSSFVCIAGWLAIYFSEG------ALSL 141 (483)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~l 141 (483)
.+.+.+++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++.+.++ ++.+
T Consensus 23 ~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (437)
T TIGR00792 23 LFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA 102 (437)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 445778899999999999999999999999999999997 67744 677788888888888877764 4566
Q ss_pred HHHHHHhhhcccccccccchhhhccc-CccchhhHHhHHHHHHHHHHHHHHHhh-----------ccchhHHHHHHhHHH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIA-PKELRGALTSANQLLIVIGASTFFIIG-----------TVATWRTLALVGVIP 209 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~iG~~~~~~l~-----------~~~~wr~~f~~~~~~ 209 (483)
++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+. ...+||+.+.+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 77888999988887777788888987 578899999988887777765544332 135899999998877
Q ss_pred HHHHHH-HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHH
Q 011565 210 CAVLLL-GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGV 288 (483)
Q Consensus 210 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (483)
+++..+ .++..||+++. .+.++ +++......+++++++|.++......
T Consensus 183 ~~~~~~~~~~~~~e~~~~----~~~~~---------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (437)
T TIGR00792 183 GVVSLIICFFGTKERYSE----IPKNI---------------------------EKKLSLKQIFKALFKNDQLLILCLAY 231 (437)
T ss_pred HHHHHHHHHcCCEecCCC----CCccc---------------------------ccCCCHHHHHHHHhCCHHHHHHHHHH
Confidence 766544 46667775420 00000 00111233456677777766655555
Q ss_pred HhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHH
Q 011565 289 GLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFL 368 (483)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (483)
++............++|.....+ .....+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--- 307 (437)
T TIGR00792 232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--- 307 (437)
T ss_pred HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---
Confidence 54444433222223333332221 01111233444577888999999999999999999888877777666555432
Q ss_pred HhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC-------CccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 369 KTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP-------INIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
+ .+........++.+++.+...+..+++..|..+ ++.+|...|+.++...+|..+++.+.|.+.+
T Consensus 308 -------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 308 -------G-SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred -------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122333344445555555556667778777754 5567999999999999999999999999887
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=216.02 Aligned_cols=323 Identities=11% Similarity=0.019 Sum_probs=218.2
Q ss_pred ccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-----chhHH-HHHHHHHHHHHHHHHHHh---h
Q 011565 66 VGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI-----GRKGA-MRVSSFVCIAGWLAIYFS---E 136 (483)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~ 136 (483)
.+..++..|.+.+|+|+|.++.|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++. .
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3456778899999999999999999765 555555 99999999998 89887 467788888887777777 4
Q ss_pred chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cch--------hHHHHH
Q 011565 137 GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VAT--------WRTLAL 204 (483)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~--------wr~~f~ 204 (483)
+++.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++. ..+ ||..|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 66677788888898888888999999999999999999999999999999999888775 456 999999
Q ss_pred HhHHHHHHHHHHh-hcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCC---
Q 011565 205 VGVIPCAVLLLGL-FLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRY--- 280 (483)
Q Consensus 205 ~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 280 (483)
+.++..++..+.. +..||+++. +.+.++ + +++.+..++++++++.
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~-----------------~-----------~~~~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQED---ASVPKP-----------------L-----------TQAVLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc---cccchh-----------------H-----------HHHHHHHHHHHHHhcCchH
Confidence 9888777755553 345664220 000000 0 0001224556666665
Q ss_pred cchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHH---H-HHHHHHHHHHHHHHhhcCCccchhhHhHHHH
Q 011565 281 LHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISY---A-LLQVVVTFFNIIMIDRAGRKPLLLFAATGLL 356 (483)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 356 (483)
.+...+...+......... .+.+.+.++.|.+........ + +..+++.++++++.||+|+|+.+..+.++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 286 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAAT----VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3333333333333322223 333333344577765544333 2 4567899999999999999998887777766
Q ss_pred HHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHH
Q 011565 357 LGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNW 426 (483)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 426 (483)
+...++........... ......+.+....++.++..+...+...++..|.+|+++||+..|+.+...+
T Consensus 287 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 287 LTNAGFVWLASNGHHDG-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhcCcccc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 65544433210000000 0001223344444455565566678888999999999999999999887654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=188.79 Aligned_cols=360 Identities=19% Similarity=0.203 Sum_probs=272.5
Q ss_pred HHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHH
Q 011565 49 YLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAG 128 (483)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~ 128 (483)
+..+..+.+..+.-....+.+.|.++.+++|+|+|.+..|++.+...+...+.+++..++++|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555556666777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cc-hhHHHH
Q 011565 129 WLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VA-TWRTLA 203 (483)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~-~wr~~f 203 (483)
.++-... +.+.++.+-.+.|.|.+......+..+.+.||+ +-+..++++....++|..+++.+.- +. +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9999887 888899999999999999999999999999975 4699999999988888777765543 44 799999
Q ss_pred HHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcch
Q 011565 204 LVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHS 283 (483)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (483)
.+-+.++++.++.|+.-...++ . ...+.+..+-..++|+|.-|.
T Consensus 169 ~~WAl~allAl~~WlPq~~r~~-------~-----------------------------~~~~~~~~~~~~vw~~~~aW~ 212 (395)
T COG2807 169 GFWALLALLALLIWLPQALREQ-------A-----------------------------ASIATKLVSVRKVWRSPLAWQ 212 (395)
T ss_pred HHHHHHHHHHHHHHhhhccccc-------c-----------------------------cccccccccccccccCchhHH
Confidence 9999998888877764321110 0 001122233345788888888
Q ss_pred HHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHH---HHHHHHHHHHHHHHHHHHhhc-CCccchhhHhHHHHHHH
Q 011565 284 VTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGT---ISYALLQVVVTFFNIIMIDRA-GRKPLLLFAATGLLLGC 359 (483)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~ 359 (483)
..+.+.+..+. ++....|+|.++.+.|.++...+ ....+.+++.++....+.+|. ++|+.......++.++.
T Consensus 213 vtLfmGlqS~~----~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 213 VTLFMGLQSLL----YYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred HHHHHHhhHHH----HHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 87777777665 45666777888888899875544 455667778888999999875 45666666666667776
Q ss_pred HHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccC-CCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011565 360 LLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIF-PINIKGVGGSLTTLVNWFGAWAISYTFNF 438 (483)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 438 (483)
+.+.+. +....+.+ .++.|.+.++.++...+.+.... .++..+.-.|+.+.++++-..+||.+.|+
T Consensus 289 ~G~~~~---------P~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~ 355 (395)
T COG2807 289 VGLLLA---------PGQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF 355 (395)
T ss_pred HHHHHh---------hhhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence 666543 11112222 35667777777777776666654 35667888999999999999999999999
Q ss_pred HHh-hhh-hHHHHHHHHHHHHHHHHHH
Q 011565 439 LET-WSS-YGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 439 ~~~-~~~-~~~~~~~~~~~~~~~~~~~ 463 (483)
+.| .+. ......+..+.++..+.-+
T Consensus 356 lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 356 LHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 999 443 3344444444444444433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-26 Score=198.13 Aligned_cols=329 Identities=13% Similarity=0.070 Sum_probs=210.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccch
Q 011565 82 LSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPV 161 (483)
Q Consensus 82 ~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (483)
.+....|.+.|.|.++..+.++.+|.++||+|||+++++|++..++..++.+.++|+..+++.|++.|+..| ...+..+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rA 143 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRA 143 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHH
Confidence 345567999999999999999999999999999999999999999999999999999777778999999986 6678889
Q ss_pred hhhcccCccchhhHHhHHHHHHHHHHHHHHHhhccchh------HHHHHHhH----HHHHH-HHHHhhcCCCChhHHHhh
Q 011565 162 FTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVATW------RTLALVGV----IPCAV-LLLGLFLIPESPRWLAKI 230 (483)
Q Consensus 162 ~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~~w------r~~f~~~~----~~~~~-~~~~~~~~~e~p~~~~~~ 230 (483)
+++|.+++|+|+++++..++.+++|.++||.+++.+.- +++|.... ++... .....+++||+-+...++
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~ 223 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRN 223 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhc
Confidence 99999999999999999999999999999999984422 22233322 22222 233467889983211111
Q ss_pred CCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHH---HHhhhhhhccchhhhHHhHH
Q 011565 231 GKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIG---VGLMVIQQFGGINAIAFYAA 307 (483)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 307 (483)
+++.+..+. .+..++..+..+..--..+|++........ +.+..+.+...+....++..
T Consensus 224 ~~~~~~~~~------------------~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~ 285 (451)
T KOG2615|consen 224 DEHSTLQEA------------------ADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVL 285 (451)
T ss_pred ccccchhhh------------------hhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 000100000 000000111111111122333333221222 22222222222333333333
Q ss_pred HH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCcc-----chhhHhHHHHHHHHHHHHHHHHHhcCCcccccchH
Q 011565 308 NI-FQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKP-----LLLFAATGLLLGCLLLAAAFFLKTYGLALESVPAL 381 (483)
Q Consensus 308 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (483)
.+ .+..|+++...+-++...++.+.++.+.+..+..|.+ .+..+..++.-.++++.. .....
T Consensus 286 ~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~------------~~~~~ 353 (451)
T KOG2615|consen 286 FLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL------------ARTPV 353 (451)
T ss_pred HhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc------------cccch
Confidence 33 1344666666565666666666666666666655544 222222222222222221 13334
Q ss_pred HHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 382 TLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
.+.....+..+......+....++....|+++||+.+|+....+.++.++||.+.|.+..
T Consensus 354 ~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 354 VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 555555555666666667778888999999999999999999999999999999998877
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-24 Score=204.70 Aligned_cols=402 Identities=15% Similarity=0.092 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHH
Q 011565 47 MVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126 (483)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 126 (483)
++|..+..........+.. ..++...+.+++++|+|.++.+++.++. ..+..++++.|++.||+|+|+++.++.++++
T Consensus 25 ~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4444444433333333321 2233556679999999999999998874 4556788899999999999999999999999
Q ss_pred HHHHHHHHh------hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHH-HHhhcc--c
Q 011565 127 AGWLAIYFS------EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTF-FIIGTV--A 197 (483)
Q Consensus 127 ~~~~~~~~~------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~-~~l~~~--~ 197 (483)
++.++++++ ++++.+.+.|+++|+|.+...+.....+.+|+| ++||++.++...+.++|.++. ++.... .
T Consensus 103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~ 181 (591)
T PTZ00207 103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD 181 (591)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 689999999999999999988999999999996 679999999999999999764 443332 3
Q ss_pred hhHHHHHHhHHHHHHH-HHHhhcCCCC--hhHHHhhCCHHHHHHHHHHHhc-----------------------------
Q 011565 198 TWRTLALVGVIPCAVL-LLGLFLIPES--PRWLAKIGKHEEFEAALQKLRG----------------------------- 245 (483)
Q Consensus 198 ~wr~~f~~~~~~~~~~-~~~~~~~~e~--p~~~~~~~~~~~~~~~~~~~~~----------------------------- 245 (483)
+|+..|++.+++.++. ++.+.++++. +++..++++.++.++..++..+
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~ 261 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL 261 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence 7888888877666553 4444444443 3332222111111111000000
Q ss_pred -----------------------------------------Cc-c-cchHHHHHH-H---H--HHHH---------HccC
Q 011565 246 -----------------------------------------KD-A-DISQEATEI-Q---E--YIET---------LERL 267 (483)
Q Consensus 246 -----------------------------------------~~-~-~~~~~~~~~-~---~--~~~~---------~~~~ 267 (483)
.+ . +.+.+..+. + + ..+. ..++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 341 (591)
T PTZ00207 262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQ 341 (591)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCC
Confidence 00 0 000000000 0 0 0000 0011
Q ss_pred chhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHc-CCCC----ch-HHHHHHHHHHHHHHHHHHHHhh
Q 011565 268 PKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTA-GLSP----ST-GTISYALLQVVVTFFNIIMIDR 341 (483)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~-~~~~~~~~~~~~~~~~g~l~d~ 341 (483)
...++++.+++..+|.+++.+++....... ....+.++.+.. |.+. .. ...+.++++.+|++..|+++..
T Consensus 342 ~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~----~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~ 417 (591)
T PTZ00207 342 FQETFIEGLKTARLWCLLWSIFCCVGAHFV----IIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW 417 (591)
T ss_pred CcchHHHHHhchhHHHHHHHHHHhhCchhe----eeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH
Confidence 122677778888888877776666555443 344455555555 5422 22 5677899999999999998733
Q ss_pred cCCcc----c-----hhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCc
Q 011565 342 AGRKP----L-----LLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPIN 412 (483)
Q Consensus 342 ~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 412 (483)
..+|+ . +.+..+ +.++.++++.. .+...+.+..++.++..+..+++....++|++. +
T Consensus 418 ~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~------------~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k 483 (591)
T PTZ00207 418 SQKRRAEDRVPITIALFIPSV-CIITMLTLFLT------------LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-K 483 (591)
T ss_pred HHhhccccccchhHHHHHHHH-HHHHHHHHHHH------------CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-c
Confidence 22221 1 222222 44444444432 222466777777888888888888999999999 8
Q ss_pred cchhhhHHHHHHHHHHHHHH-HHHHHHHHhhh--------------hhHHHHHHHHHHHHHHHHHHhcccCC
Q 011565 413 IKGVGGSLTTLVNWFGAWAI-SYTFNFLETWS--------------SYGTFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 413 ~~~~~~g~~~~~~~~g~~~~-~~~~g~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
+-|+-+-+.....-+|..+- ..+.|.++|.. ...++++.++++.++.+....+..++
T Consensus 484 ~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 484 DPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred chHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 88888777777777777776 45778777721 14578888888888877765554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=196.20 Aligned_cols=388 Identities=12% Similarity=0.055 Sum_probs=252.3
Q ss_pred hhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhh----hhchhHHHHH-HHHHHHHHHHHHHH
Q 011565 60 YSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIAD----FIGRKGAMRV-SSFVCIAGWLAIYF 134 (483)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~~~~-~~~~~~~~~~~~~~ 134 (483)
+...+..+...+.++.+.+++|.+..+.+++..+..+...+.+++.|+++| |+||||.++. +.....++.++.++
T Consensus 14 ~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~ 93 (477)
T TIGR01301 14 AGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF 93 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 334445556667777788999999999999999999999999999999999 5999999877 46667777777778
Q ss_pred hhchh-----------------HHHHHHHHhhhcccccccccchhhhcccCccch--hhHHhHHHHHHHHHHHHHHHhhc
Q 011565 135 SEGAL-----------------SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELR--GALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 135 ~~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
+++++ .++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++|+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76653 223333344457777888889999999998865 67899999999999999888775
Q ss_pred cc-------------------hhHHHHHHhHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHH
Q 011565 196 VA-------------------TWRTLALVGVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEAT 255 (483)
Q Consensus 196 ~~-------------------~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
.. +.|+.|++.++..++..+. .+..+|.|... +++.++ + +.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~---~~~~---------- 236 (477)
T TIGR01301 174 YSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S---EAAP---------- 236 (477)
T ss_pred HHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h---hccc----------
Confidence 21 4678899988877775544 77889875311 000000 0 0000
Q ss_pred HHHHHHHHHccCchhhhHHhhh-----cCCcchHHHHHHhhhhhhccchhhhHHhHH-HHHHHcCCCC----------ch
Q 011565 256 EIQEYIETLERLPKARLLDLFQ-----KRYLHSVTIGVGLMVIQQFGGINAIAFYAA-NIFQTAGLSP----------ST 319 (483)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~ 319 (483)
.++......++++++ .+..+.+.+..++.++.++........|.. ++++....+. ..
T Consensus 237 -------~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~ 309 (477)
T TIGR01301 237 -------PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAF 309 (477)
T ss_pred -------ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHH
Confidence 000000112222222 234455555555555554443333333332 2222111011 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-ccchhhHhHHHHHHHHHHHHHHHHHhcC-C-------cccc-cchHHHHHHHHH
Q 011565 320 GTISYALLQVVVTFFNIIMIDRAGR-KPLLLFAATGLLLGCLLLAAAFFLKTYG-L-------ALES-VPALTLAGVLVY 389 (483)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~-~~~~~~~~~~~~ 389 (483)
.....++...+.+++..++.+|+|+ |+....+.++.++++....+.....+.. . ..+. .........+..
T Consensus 310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (477)
T TIGR01301 310 GLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI 389 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence 2344455556777778888999985 6666778777777777776543211100 0 0000 012455566667
Q ss_pred HHHhhcccccchhhhccccCCC--ccchhhhHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHh
Q 011565 390 IGSFSSGMGATPWVLMSEIFPI--NIKGVGGSLTTLVNWFGAWAISYTFNFLET---WSSYGTFLLYAAVNILGIVFITT 464 (483)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 464 (483)
.|........+.++++++..|+ +..|..+|+.|.+..+.+++.....|.+.+ .+....+.+.++..++++++.++
T Consensus 390 ~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 390 LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 7777777778889999999884 556999999999999999999988888665 23345566667777777788888
Q ss_pred cccCCCC
Q 011565 465 VVPETKG 471 (483)
Q Consensus 465 ~~~~~~~ 471 (483)
.+|+.+.
T Consensus 470 ~~~~~~~ 476 (477)
T TIGR01301 470 LLPRPRV 476 (477)
T ss_pred hCCCCCC
Confidence 8877653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=197.34 Aligned_cols=362 Identities=10% Similarity=-0.055 Sum_probs=230.3
Q ss_pred HHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHH--HHHHHHHHHHHHHhHH-HhhhhhchhHHHHHHHHHH-HHH
Q 011565 53 LVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVF--GSILTFGAMIGAITSG-PIADFIGRKGAMRVSSFVC-IAG 128 (483)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~--~s~~~l~~~~~~~~~G-~l~dr~Grr~~~~~~~~~~-~~~ 128 (483)
..+...++..+...+...|.+|.+.+|.|.|.+++|++ .+...+...+.+++++ +..||+||||..++...+. ++.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 34455567788888889999999999999999999997 4677888888888885 4799999999876655332 222
Q ss_pred HHHHH---Hhhc-hhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHh----hccchhH
Q 011565 129 WLAIY---FSEG-ALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFII----GTVATWR 200 (483)
Q Consensus 129 ~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l----~~~~~wr 200 (483)
....+ ...+ ...++..-++.++..+...+...++..|..++++++...+....+..+|..+|+.. ....|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 22222 1222 33444555556666777777777788888888888888888888888888888854 3467999
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCC
Q 011565 201 TLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRY 280 (483)
Q Consensus 201 ~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (483)
..|++.++..++..+..++++|+++. +++.+ +.+..++++.+|+|.
T Consensus 164 ~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~~~~~~~~~l~~~~ 209 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLWLKDRAVA---SPEAP-------------------------------LARRASLFRFFRRPL 209 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcC---ccccc-------------------------------hhhHHHHHHHHcCcC
Confidence 99999888777655554444433210 00000 001223567778887
Q ss_pred cchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHH----HHHHHHHHHHHHHHhhcCCccchhhHhHHHH
Q 011565 281 LHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYA----LLQVVVTFFNIIMIDRAGRKPLLLFAATGLL 356 (483)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 356 (483)
.+......++........+. +.+.+.++.|.+......... ...+++.++.|++.||+++|+.+..+..+..
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~----~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 285 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFG----LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAG 285 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66655555554443333333 334444556888766555543 2455778899999999999998877665543
Q ss_pred HHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCC-ccchhhhHHHHHHHHHHHHHHHHH
Q 011565 357 LGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPI-NIKGVGGSLTTLVNWFGAWAISYT 435 (483)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~ 435 (483)
+..+...... ..+ .............+.+...+...+...+...+..++ +.+++..++.+...++|..++|.+
T Consensus 286 ~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~ 359 (390)
T TIGR02718 286 SLALLWFAQA--AFW----LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSI 359 (390)
T ss_pred HHHHHHHHHH--Hcc----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222110 000 001111222222222222333334445555555555 889999999999999999999999
Q ss_pred HHHHHh-hhhhHHHHHHHHHHHHH
Q 011565 436 FNFLET-WSSYGTFLLYAAVNILG 458 (483)
Q Consensus 436 ~g~~~~-~~~~~~~~~~~~~~~~~ 458 (483)
.|.+.| .++...+...+++.+++
T Consensus 360 ~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 360 AGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHH
Confidence 999999 45445555555544444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=200.65 Aligned_cols=352 Identities=12% Similarity=0.041 Sum_probs=214.7
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh-hchhHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHhhhcc
Q 011565 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF-IGRKGAMRVSSFVCIAGWLAIYFSE-GALSLDLGRLATGYGM 152 (483)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~ 152 (483)
.+.+++|++.++.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.+.++|+++|+|.
T Consensus 47 yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~ 126 (500)
T PRK09584 47 YLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGN 126 (500)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 5678999999999999988887777777899999999 5999999999999999999999875 5666778899999999
Q ss_pred cccccccchhhhcccCccc--hhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH----hhcCCC
Q 011565 153 GIFSYVVPVFTAEIAPKEL--RGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLG----LFLIPE 222 (483)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~----~~~~~e 222 (483)
|...+...+++.|++|+++ |..++++++.+.++|..+||.+++ ..|||+.|++.++..++.++. ...++|
T Consensus 127 g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 127 GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 9999999999999998654 456788888888999988888776 569999999977654443322 223333
Q ss_pred ChhHHHhhCCHHHHHHHH-----------HHHhcCcccchHHHHH------HHHHHHHHccCchhhhHHhhhcCCcchHH
Q 011565 223 SPRWLAKIGKHEEFEAAL-----------QKLRGKDADISQEATE------IQEYIETLERLPKARLLDLFQKRYLHSVT 285 (483)
Q Consensus 223 ~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (483)
.++. .++++.+...... ......+.+....... .........+.++ .-+++.. . .
T Consensus 207 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~-~ 278 (500)
T PRK09584 207 YGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKG-----AARRKMI-V-A 278 (500)
T ss_pred CCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCH-----HHHHHHH-H-H
Confidence 2110 0000011100000 0000000000000000 0000000000000 1111111 1 1
Q ss_pred HHHHhhhhhhccchhhhHHhHHHHHHH------cCCC--CchHHHHHHHHHHHHHHHHHHHHhhcCC----ccchhhHhH
Q 011565 286 IGVGLMVIQQFGGINAIAFYAANIFQT------AGLS--PSTGTISYALLQVVVTFFNIIMIDRAGR----KPLLLFAAT 353 (483)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~----~~~~~~~~~ 353 (483)
+..++....++..+...+.++...... .|.. ++.......+..++..++..++-+|.++ .+.+.+++.
T Consensus 279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~ 358 (500)
T PRK09584 279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMV 358 (500)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHH
Confidence 111222222222333334443332111 1222 3344455555556666666555555444 455667777
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHH
Q 011565 354 GLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAIS 433 (483)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (483)
+.+++++.+.......+ .....+.++.+...++.+.+.....|...+++.+..|++.||.++|+......+|..++.
T Consensus 359 l~~l~f~~l~~~~~~~~---~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g 435 (500)
T PRK09584 359 LCSGAFLVLPLGAKFAN---DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAG 435 (500)
T ss_pred HHHHHHHHHHHHHHhcC---CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665422111 011233456777788888888888999999999999999999999988877777777776
Q ss_pred HHHH
Q 011565 434 YTFN 437 (483)
Q Consensus 434 ~~~g 437 (483)
.+.+
T Consensus 436 ~~~~ 439 (500)
T PRK09584 436 YVAN 439 (500)
T ss_pred HHHH
Confidence 6664
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-24 Score=179.70 Aligned_cols=352 Identities=14% Similarity=0.075 Sum_probs=234.0
Q ss_pred CchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh-hchhHHHHHH
Q 011565 43 DSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF-IGRKGAMRVS 121 (483)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~ 121 (483)
....++.+.+..+|+..|...+.......+..+...|.+++.++..++.+.|++...+.+++.|++.|| +|.|..-++-
T Consensus 37 S~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~ 116 (459)
T KOG4686|consen 37 SALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL 116 (459)
T ss_pred hhhhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence 344567788888888888888888888888888899999999999999999999999999999999995 6888877776
Q ss_pred HHHHHHHHHHHH---HhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc---
Q 011565 122 SFVCIAGWLAIY---FSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT--- 195 (483)
Q Consensus 122 ~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~--- 195 (483)
+....+|.++++ ..+.+|.++++||+.|+|.-......++++.-|+..||.+.++|+.....-+|..+--.+..
T Consensus 117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 677777777775 46899999999999999998888899999999999999999999999988888765433322
Q ss_pred -cc------------hhHHHHHH-hHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 011565 196 -VA------------TWRTLALV-GVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYI 261 (483)
Q Consensus 196 -~~------------~wr~~f~~-~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (483)
.. |-...+-. .+...++..+..-+.. +.+++.+++-++..
T Consensus 197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D------------~rAerilh~e~g~~-------------- 250 (459)
T KOG4686|consen 197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSD------------DRAERILHLEEGFL-------------- 250 (459)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------hHHHHHHhhhcCcc--------------
Confidence 11 11011110 1111122111111111 11111111111000
Q ss_pred HHHccCchhhhHHhhh-cCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHH
Q 011565 262 ETLERLPKARLLDLFQ-KRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNII 337 (483)
Q Consensus 262 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~ 337 (483)
.+..++.+... .+.+|.+.+.+.++....+-....-+.+.+.- .|+++ +.+.........+.+++.|.
T Consensus 251 -----Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r---fGlS~~~a~~i~s~vy~Isav~spvfg~ 322 (459)
T KOG4686|consen 251 -----GEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR---FGLSAVSAGNILSTVYGISAVLSPVFGA 322 (459)
T ss_pred -----cCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh---hCCChhhccchhhhhhhhhhhhhhhHHH
Confidence 00011111111 35566666666666655544444444444433 36654 44444445566677889999
Q ss_pred HHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhh
Q 011565 338 MIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVG 417 (483)
Q Consensus 338 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 417 (483)
++||.|++-..+.+..+..+..-.+... +.+.....+.+.|..........|..+..+.|.++.|++
T Consensus 323 i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-------------t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTa 389 (459)
T KOG4686|consen 323 ISDKYGFNLWWVASACILTLLGHSGLFF-------------TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTA 389 (459)
T ss_pred hHhhhcceehhHHHHHHHHHHHhhhHHh-------------hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcch
Confidence 9999999977766554443332222221 112222333444444444445567788888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 418 GSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 418 ~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
.|.++...++|-.+.|.+.|.+.|
T Consensus 390 ygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 390 YGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred HHHHHHHHhhhhhHHhhhhheeec
Confidence 999999999999999999999988
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=180.55 Aligned_cols=361 Identities=17% Similarity=0.132 Sum_probs=237.7
Q ss_pred hcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhc-hhHHHHHHHHHHHHHHHHHHHhhchhH
Q 011565 62 FGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIG-RKGAMRVSSFVCIAGWLAIYFSEGALS 140 (483)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (483)
..+..+...|.++.+-++.|.|..|+|.+.+...+...++++++|.++||++ +|+++.+..++.++........++++.
T Consensus 14 ~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~ 93 (400)
T PF03825_consen 14 YFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWW 93 (400)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3344556778888899999999999999999999999999999999999986 577888888888887777788889999
Q ss_pred HHHHHHHhhhcccccccccchhhhcccCcc--chhhHHhHHHHHHHHHHHH-HHHhhccch---hHHHHHHhHHHHHHHH
Q 011565 141 LDLGRLATGYGMGIFSYVVPVFTAEIAPKE--LRGALTSANQLLIVIGAST-FFIIGTVAT---WRTLALVGVIPCAVLL 214 (483)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~iG~~~-~~~l~~~~~---wr~~f~~~~~~~~~~~ 214 (483)
+++.-++..+......|...++..+...++ +-|+.=.+-..++.++... +..+.+..+ ..+.+++.+...++..
T Consensus 94 ~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~ 173 (400)
T PF03825_consen 94 LFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA 173 (400)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH
Confidence 988888888888888888888888877532 2243333333444444322 222333222 2345666665555555
Q ss_pred HHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhh
Q 011565 215 LGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQ 294 (483)
Q Consensus 215 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (483)
...+.+|+.|+.. ..++ ..++....+..+++|+|+....++..++....
T Consensus 174 ~~~l~lp~~~~~~---~~~~----------------------------~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~ 222 (400)
T PF03825_consen 174 GFALFLPKTPPKR---SAKE----------------------------SVKKLLGLDALKLLKNPRFLVFLLAAFLIGIS 222 (400)
T ss_pred HHHHhCCCCcccc---ccCC----------------------------CcccccchHHHHHhcCccHHHHHHHHHHHHHH
Confidence 5556678776210 0000 00111122345788888877666666665554
Q ss_pred hccchhhhHHhHHHHHHHcC-CCCchHH---HHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHh
Q 011565 295 QFGGINAIAFYAANIFQTAG-LSPSTGT---ISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKT 370 (483)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (483)
.... ..|.+.++++.| .+..... .+..+..++.-...+++.+|+|.++++.++.+..++=..++....
T Consensus 223 ~~~~----~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~---- 294 (400)
T PF03825_consen 223 HAAY----YTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS---- 294 (400)
T ss_pred HHHH----HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 4433 334444455555 4433333 344556778888999999999999999988888777766666530
Q ss_pred cCCcccccchHHHHHH----HHHHHHhhcccccchhhhccccCCCccchhhhHHHHHH-HHHHHHHHHHHHHHHHh-hhh
Q 011565 371 YGLALESVPALTLAGV----LVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLV-NWFGAWAISYTFNFLET-WSS 444 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~~~~-~~~ 444 (483)
.+.+..... .++-+...+........++.+..|++.|+++.++++.. ..+|..+|..++|++.| .+.
T Consensus 295 -------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 295 -------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred -------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 122222222 22345555555667778999999999999999999876 57999999999999998 332
Q ss_pred hH------HHHHHHHHHHHHHHHHHhcccC
Q 011565 445 YG------TFLLYAAVNILGIVFITTVVPE 468 (483)
Q Consensus 445 ~~------~~~~~~~~~~~~~~~~~~~~~~ 468 (483)
.. .+.+.+++.++..++.+++.||
T Consensus 368 ~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 368 RGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 22 2333444444444444444444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=190.56 Aligned_cols=324 Identities=10% Similarity=0.034 Sum_probs=211.3
Q ss_pred hHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh----hchh-HHHHHHHHHHHHHHHHHHHhhc------hhHH
Q 011565 73 QNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF----IGRK-GAMRVSSFVCIAGWLAIYFSEG------ALSL 141 (483)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l 141 (483)
...+.+++|+++.++|.+.++..+..++..|+.|.++|| +||| +.++.+....++..++....++ ++.+
T Consensus 33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 446788899999999999999999999999999999998 7774 5566777777777766555543 3455
Q ss_pred HHHHHHhhhcccccccccchhhhccc-CccchhhHHhHHHHHHHHHHHHHHHhh----c-------cchhHHHHHHhHHH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIA-PKELRGALTSANQLLIVIGASTFFIIG----T-------VATWRTLALVGVIP 209 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~iG~~~~~~l~----~-------~~~wr~~f~~~~~~ 209 (483)
++..++.+.+.........++..|+. ++++|++..++...+..+|..+++.+. . ..+|+..+.+.+++
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii 192 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL 192 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 66666777666667777778999988 568899887777777777666554322 1 24788888877766
Q ss_pred HHHHHH-HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHH
Q 011565 210 CAVLLL-GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGV 288 (483)
Q Consensus 210 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (483)
+++..+ .++..+|.++. + + +++......+++++|++.++......
T Consensus 193 ~~v~~~~~~~~~~e~~~~-----~-~----------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~ 238 (444)
T PRK09669 193 GVVLFFCCFFMTKERYTP-----E-V----------------------------DNSSSVWKDLKLLLGNSQWRIMFIFN 238 (444)
T ss_pred HHHHHHHHhCCeEEecCC-----C-C----------------------------cCCCCHHHHHHHHhCCchHHHHHHHH
Confidence 655443 35555553210 0 0 00112234566778888777665554
Q ss_pred HhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHH
Q 011565 289 GLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFL 368 (483)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (483)
++.............+|.....+... ..........+..+++.++.+++.||+|+|+.+..+.....+..+.+...
T Consensus 239 ~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~--- 314 (444)
T PRK09669 239 VVLLTAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI--- 314 (444)
T ss_pred HHHHHHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---
Confidence 44433332222222333332221100 01122233345667888899999999999998887766554433322221
Q ss_pred HhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC-------CccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 369 KTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP-------INIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
+..+...+....++.+.+.+...+..+++.+|..+ .+..|...|..++...+|..+++.+.|.+.+
T Consensus 315 -------~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 315 -------PPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred -------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233344455556666666677778888888764 3345778899999999999999999999877
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-21 Score=171.71 Aligned_cols=391 Identities=14% Similarity=0.093 Sum_probs=272.6
Q ss_pred ccCchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHH
Q 011565 41 SKDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRV 120 (483)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~ 120 (483)
..+..+++|.++++.++..+..++..--+++.......-+| +....-|..-+|.+.+....+++-|+.||+|-|...++
T Consensus 36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll 114 (480)
T KOG2563|consen 36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL 114 (480)
T ss_pred ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence 34567789999999999999999988888888888888888 77888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh------chh--HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHH
Q 011565 121 SSFVCIAGWLAIYFSE------GAL--SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFI 192 (483)
Q Consensus 121 ~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~ 192 (483)
+..+.++|..+-..+. .++ ....+..+.+.+.-.....-..+..-||+++||..+..+-..+..+|.+++.+
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 9999999999987763 345 66788999998887777776778888999999999999888888888888776
Q ss_pred hhc----------cchhHH--HHHHhHHHHHH-HHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHH
Q 011565 193 IGT----------VATWRT--LALVGVIPCAV-LLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQE 259 (483)
Q Consensus 193 l~~----------~~~wr~--~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (483)
+.. ...|.. .|+....++.+ ..+..+..++.|+.. .....+
T Consensus 195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP---ps~s~~----------------------- 248 (480)
T KOG2563|consen 195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP---PSASQA----------------------- 248 (480)
T ss_pred ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---CchhHh-----------------------
Confidence 654 234654 34433333333 222233334433210 000000
Q ss_pred HHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCC---CCchHHHHHHHHHHHHHHHHH
Q 011565 260 YIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGL---SPSTGTISYALLQVVVTFFNI 336 (483)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g 336 (483)
+..+..-..+.++.++++.+....+++.+.... ++.++..+...+...+. .++.......+.+++++++.|
T Consensus 249 --~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~----F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~g 322 (480)
T KOG2563|consen 249 --ALQDASFPKSIKSCFKNRQFIILAICYGIGLGL----FNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASG 322 (480)
T ss_pred --hhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHH----HHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHH
Confidence 000122456677888888776666655555443 44444444433433343 467888888999999999999
Q ss_pred HHHhhcCCccc-hhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccch
Q 011565 337 IMIDRAGRKPL-LLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKG 415 (483)
Q Consensus 337 ~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (483)
.+.||.++-+. +.+......++...+... . ......+.++..+...+.+..+..|+..-+..|..-|..-+
T Consensus 323 ii~Dktk~fk~~~~v~~~~~~v~~~~l~~~--t------~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~ 394 (480)
T KOG2563|consen 323 IIADKTKKFKLTTLVLYLFALVGTLMLLTC--T------LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEG 394 (480)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHh--h------ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCc
Confidence 99999887544 333333333332111111 1 11234556677777888888999999999999987677889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-hh----hhHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 011565 416 VGGSLTTLVNWFGAWAISYTFNFLET-WS----SYGTFLLYAAVNILGIVFITTVVPETKGR 472 (483)
Q Consensus 416 ~~~g~~~~~~~~g~~~~~~~~g~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (483)
+..|+.+..+++-+++-..+.+...+ .+ ....-+.....+.+..++..++.++.+++
T Consensus 395 tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 395 TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 99999999999998888888888777 33 23333444444455555555544444333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-20 Score=175.74 Aligned_cols=359 Identities=12% Similarity=0.032 Sum_probs=213.4
Q ss_pred cchH-HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-chhHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHH
Q 011565 71 PTQN-AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI-GRKGAMRVSSFVCIAGWLAIYFSE-GALSLDLGRLA 147 (483)
Q Consensus 71 ~~~~-~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l 147 (483)
..+| .+.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++.+..+ +...+.++..+
T Consensus 30 ~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~l 109 (493)
T PRK15462 30 ALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAI 109 (493)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3444 45677999999999999999999999999999999999 999999999999999988777643 22334444455
Q ss_pred hhhcccccccccchhhhcccCcc--chhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCC
Q 011565 148 TGYGMGIFSYVVPVFTAEIAPKE--LRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIP 221 (483)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (483)
.++|.|...+...++++|.+|++ +|..++++...+.++|..++|.+.+ ..|||+.|.+.++..++.++.++..+
T Consensus 110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~ 189 (493)
T PRK15462 110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGN 189 (493)
T ss_pred HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667777788889999999875 6888999999999999999988876 46899999987665544444333221
Q ss_pred CChhHH-H-hhCCHHHHHHHHHH-----Hhc------CcccchHHHHH-HHH---------HH-HHHccCchhhhHHhhh
Q 011565 222 ESPRWL-A-KIGKHEEFEAALQK-----LRG------KDADISQEATE-IQE---------YI-ETLERLPKARLLDLFQ 277 (483)
Q Consensus 222 e~p~~~-~-~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~-~~~---------~~-~~~~~~~~~~~~~~~~ 277 (483)
+..... . ++++.++.+..... ... ......++... .-. .. -..++.++.+ |
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-----r 264 (493)
T PRK15462 190 RHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQ-----R 264 (493)
T ss_pred hhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-----H
Confidence 110000 0 00000000000000 000 00000000000 000 00 0000000000 1
Q ss_pred cCCcchHHHHHHhhhhhhcc----chhhhHHhHHHHHHH--cC--CCCchHHHHHHHHHHHHHHHHHHHHhhcCC--cc-
Q 011565 278 KRYLHSVTIGVGLMVIQQFG----GINAIAFYAANIFQT--AG--LSPSTGTISYALLQVVVTFFNIIMIDRAGR--KP- 346 (483)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~- 346 (483)
+| . ...+..++....++. ....+..|..+..+. .| .+++....+..+..++.+++..++-.|..| |.
T Consensus 265 ~r-~-~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~ 342 (493)
T PRK15462 265 KE-L-GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTV 342 (493)
T ss_pred hh-H-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 11 1 111122222222222 222233333222211 12 224555666677777777776676555532 21
Q ss_pred --c--hhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHH
Q 011565 347 --L--LLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTT 422 (483)
Q Consensus 347 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 422 (483)
. ..+++++.+++++.+.......+. ....+.++++...++...+.....|+..+.++++.|++.+|..+|+..
T Consensus 343 s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~---~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~ 419 (493)
T PRK15462 343 RIWGKFALGLGLMSAGFCILTLSARWSAM---YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYM 419 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHH
Confidence 1 456677777777666554322221 112456677888888888999999999999999999999999999996
Q ss_pred HHH-HHHHHHHHHHHHHH
Q 011565 423 LVN-WFGAWAISYTFNFL 439 (483)
Q Consensus 423 ~~~-~~g~~~~~~~~g~~ 439 (483)
... .+|..++..+.+..
T Consensus 420 l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 420 LLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 643 67777776666655
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=179.89 Aligned_cols=326 Identities=15% Similarity=0.135 Sum_probs=247.5
Q ss_pred hHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhh----hhchhHHH-HHHHHHHHHHHHHHHHh-h-------chh
Q 011565 73 QNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIAD----FIGRKGAM-RVSSFVCIAGWLAIYFS-E-------GAL 139 (483)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~~-~~~~~~~~~~~~~~~~~-~-------~~~ 139 (483)
.+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+||||.. ++|..+.+++.+++... | ...
T Consensus 25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 44577788999999999999999999999999999999 89986654 56888888888877766 4 233
Q ss_pred HHHHHHHHhhhcccccccccchhhhcccC-ccchhhHHhHHHHHHHHHHHHHHHhhc----------c-chhHHHHHHhH
Q 011565 140 SLDLGRLATGYGMGIFSYVVPVFTAEIAP-KELRGALTSANQLLIVIGASTFFIIGT----------V-ATWRTLALVGV 207 (483)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~iG~~~~~~l~~----------~-~~wr~~f~~~~ 207 (483)
.+.+..++..++.........++..|..+ +++|.+..+.-..+..+|..+...+.. . .+|++..++.+
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~ 184 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA 184 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence 45777777799999899999999999997 578999999888888887764443332 1 17999998888
Q ss_pred HHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHH
Q 011565 208 IPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTI 286 (483)
Q Consensus 208 ~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (483)
++.++..+. .+..+|.++ +.+ .++++..-++.+++++++|.++....
T Consensus 185 iv~~v~~~i~~~~~ke~~~------~~~--------------------------~~~~~~~~~~~~~~~~~nr~~~~l~~ 232 (428)
T PF13347_consen 185 IVGLVFFLITFFFVKERSV------EVT--------------------------EQEKKISLRDSLRSLFRNRPFRILLL 232 (428)
T ss_pred HHHHHHhhhhhheeeeccc------ccc--------------------------ccccccccccchhhhcccchHHHHHH
Confidence 777775444 677777211 000 00112233455778888988888777
Q ss_pred HHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHH
Q 011565 287 GVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAF 366 (483)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (483)
...+..+.........++|.....+..+ ..+.......+..+++.++.++++||+|+|+.+..+..+.+++.+++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 7777777766666667777777765442 234455566788889999999999999999999999999888888776651
Q ss_pred HHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC-------CccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 367 FLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP-------INIKGVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
..+.+.......+.+.+.+......+++.+|..+ ++..|...|+.++...++..+++.+.+.+
T Consensus 312 ----------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 312 ----------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ----------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 1345666677777788878888888889998876 34459999999999999999999999988
Q ss_pred Hh
Q 011565 440 ET 441 (483)
Q Consensus 440 ~~ 441 (483)
.+
T Consensus 382 l~ 383 (428)
T PF13347_consen 382 LA 383 (428)
T ss_pred HH
Confidence 66
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=186.99 Aligned_cols=327 Identities=12% Similarity=0.019 Sum_probs=206.1
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhh----hhch-hHHHHHHHHHHHHHHHHHHHhhc------hhHHHH
Q 011565 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIAD----FIGR-KGAMRVSSFVCIAGWLAIYFSEG------ALSLDL 143 (483)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~ 143 (483)
.+.+.+|+++.++|.+..+.-+.-++..|+.|.++| |+|| |+.++.+....+++.+++-..++ +..+++
T Consensus 32 yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~ 111 (473)
T PRK10429 32 YYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCV 111 (473)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 566777999999999999999999999999999999 6698 56666788887777666644332 334566
Q ss_pred HHHHhhhcccccccccchhhhccc-CccchhhHHhHHHHHHHHHHHHHHHh--------hc---cchhHHHHHHhHHHHH
Q 011565 144 GRLATGYGMGIFSYVVPVFTAEIA-PKELRGALTSANQLLIVIGASTFFII--------GT---VATWRTLALVGVIPCA 211 (483)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~iG~~~~~~l--------~~---~~~wr~~f~~~~~~~~ 211 (483)
..++.+++.........++..|.. ++++|.+..++.....++|..+.+.+ +. ..+|+....+.+++.+
T Consensus 112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~ 191 (473)
T PRK10429 112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFI 191 (473)
T ss_pred HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 667778888888888889999998 68999998888666666654443322 11 2357777767666655
Q ss_pred HHH-HHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHh
Q 011565 212 VLL-LGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGL 290 (483)
Q Consensus 212 ~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (483)
+.. +.++..||.++. ++.+. .++++...+..++.+++|+.++..+...++
T Consensus 192 ~~~~~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~ 242 (473)
T PRK10429 192 VSTIITLRNVHEVYSS----DNQVS-------------------------AEGSHLTLKDIVALIYKNDQLSCLLGMALA 242 (473)
T ss_pred HHHHHHHcCceecCCc----ccccc-------------------------ccccCCCHHHHHHHHhcCHHHHHHHHHHHH
Confidence 533 345556765310 00000 000011123334445567665554444444
Q ss_pred hhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHH
Q 011565 291 MVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFF 367 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (483)
............++|..... + +. +.......+..+++.++.+++.||+|+|+.+..+..+..++.+.+.....
T Consensus 243 ~~~~~~~~~~~~~y~~~y~~---~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
T PRK10429 243 YNIASNIINGFAIYYFTYVI---G-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL 318 (473)
T ss_pred HHHHHHHHhhheeeEEEEEC---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43332222222222322221 1 22 22333345677888899999999999999988777665555544433210
Q ss_pred HHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC-------CccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 368 LKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP-------INIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
. ...+.+.+.+..++.+.+.+...+..+++.+|..+ .+..|...|...+...+|..+++.+.|++.
T Consensus 319 ~-------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 319 A-------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred c-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11223333444444555555566667788888854 344577999999999999999999999987
Q ss_pred h
Q 011565 441 T 441 (483)
Q Consensus 441 ~ 441 (483)
+
T Consensus 392 ~ 392 (473)
T PRK10429 392 G 392 (473)
T ss_pred H
Confidence 6
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=182.24 Aligned_cols=360 Identities=13% Similarity=0.008 Sum_probs=216.5
Q ss_pred hhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhc-----hhHHHHHHHHHHH-HHHHHH
Q 011565 59 SYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIG-----RKGAMRVSSFVCI-AGWLAI 132 (483)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~~~~~~~~~~-~~~~~~ 132 (483)
++..+.......+..+.+.+++|+++++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ +.....
T Consensus 35 y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l 113 (468)
T TIGR00788 35 LFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLL 113 (468)
T ss_pred HHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhc
Confidence 344555433334455567778999999999999999999999666 999999998 7787888877763 443333
Q ss_pred HHhhchhHH-HHHHHHhhhcccccccccchhhhcccCccchhhHH---hHHHHHHHHHHHHHHHhhc----cchhHHHHH
Q 011565 133 YFSEGALSL-DLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALT---SANQLLIVIGASTFFIIGT----VATWRTLAL 204 (483)
Q Consensus 133 ~~~~~~~~l-~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~---~~~~~~~~iG~~~~~~l~~----~~~wr~~f~ 204 (483)
+..++.... .+..++.+++.+...+..-++..|..+ +++.... +.......+|..+++.+++ ..+||..|+
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~ 192 (468)
T TIGR00788 114 PGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFL 192 (468)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Confidence 444554444 448899999999999999999999998 5544332 2222222345555555444 679999999
Q ss_pred HhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchH
Q 011565 205 VGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSV 284 (483)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (483)
+.+.+.++..+..++++|++.....+.+.++ .. .. .... .... ...++...+.++.+++|..+..
T Consensus 193 ~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~~--------~~-~~~~----~~~~-~~~~~~~~~l~~~l~~~~i~~~ 257 (468)
T TIGR00788 193 ITAALLLLQLFVSNLSKERRAFVRPRIGTYL-EM--------NM-ALLT----LGVL-ANVKVQILGLRGAIQLLEIAKP 257 (468)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccc-hh--------hh-hhhh----hhHH-HHHHHHHHHHHHHHhcHHHHHH
Confidence 9887777766666777886310000000000 00 00 0000 0000 0001112234445666666554
Q ss_pred HHHHHh-hhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHH
Q 011565 285 TIGVGL-MVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCL 360 (483)
Q Consensus 285 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 360 (483)
.+..++ +...... .....++.+. ..|.++. ......+++.+++....+++.+|++.|+.+.++.++.+++.+
T Consensus 258 l~fifl~~~~~~~~-~~~~f~~~~~---~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~ 333 (468)
T TIGR00788 258 LIFIFLSYANLPGA-SGSVFCATTQ---CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSL 333 (468)
T ss_pred HHHHHHHHhhcCCC-CceeEEEEcc---cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHh
Confidence 444444 2211111 1111112222 3466654 445556677778888888888899988888887777766654
Q ss_pred HHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 361 LLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
...... ..++..........+....++.....+........++.+..|++.+|+..++.+.+.++|..+++.+++.+.
T Consensus 334 ~~~~l~--~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~ 411 (468)
T TIGR00788 334 FDLILV--KRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLM 411 (468)
T ss_pred Cceeee--eccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432110 001000000112223333334444444444555788999999999999999999999999999999999888
Q ss_pred h
Q 011565 441 T 441 (483)
Q Consensus 441 ~ 441 (483)
+
T Consensus 412 ~ 412 (468)
T TIGR00788 412 E 412 (468)
T ss_pred H
Confidence 7
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=181.73 Aligned_cols=320 Identities=14% Similarity=0.093 Sum_probs=198.7
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh----chhHHH-HHHHHHHHHHHHHHHHhh-------chhHH
Q 011565 74 NAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI----GRKGAM-RVSSFVCIAGWLAIYFSE-------GALSL 141 (483)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~----Grr~~~-~~~~~~~~~~~~~~~~~~-------~~~~l 141 (483)
+.+.+.+|+++.++|.+.+...+..++..++.|+++||. ||||.. .++.+...+..++....+ ..+.+
T Consensus 33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (448)
T PRK09848 33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA 112 (448)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence 357777899999999999999999999999999999996 777754 556555554444432111 12234
Q ss_pred HHHHHHhhhcccccccccchhhhcccC-ccchhhHHhHHHHH-----HHHHHHHHHHhhccc------hhHHHHHHhHHH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIAP-KELRGALTSANQLL-----IVIGASTFFIIGTVA------TWRTLALVGVIP 209 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~-----~~iG~~~~~~l~~~~------~wr~~f~~~~~~ 209 (483)
+...++.+++.+...+...++..+..+ +++|.+..+.-..+ ..++..++|.+.... +|.....+.+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~ 192 (448)
T PRK09848 113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA 192 (448)
T ss_pred HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 455667788888888777777777664 46788776655433 334455555554321 122111222222
Q ss_pred HHHH-HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHH
Q 011565 210 CAVL-LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGV 288 (483)
Q Consensus 210 ~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (483)
+++. ++.....||+++. +. ++...+..+++++|++.++...+..
T Consensus 193 ~~~~~~~~~~~~~e~~~~---~~--------------------------------~~~~~~~~~~~l~~n~~f~~~~~~~ 237 (448)
T PRK09848 193 GMVLYFICFKSTRENVVR---IV--------------------------------AQPSLKISLQTLKRNRPLFMLCIGA 237 (448)
T ss_pred HHHHHHHHHcCcEeccCC---Cc--------------------------------cCCCHHHHHHHHhCCchHHHHHHHH
Confidence 2222 2234445554210 00 0111233466788888877666665
Q ss_pred HhhhhhhccchhhhHHhHHHHHHHcCCCCchH---HHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHH
Q 011565 289 GLMVIQQFGGINAIAFYAANIFQTAGLSPSTG---TISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAA 365 (483)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (483)
++............++|..+.+ +.+.... .....+..+++.++.+++.||+++|+.+..+..+..++.+.+.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 238 LCVLISTFAVSASSLFYVRYVL---NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred HHHHHHHHHHhhhheeeEeeec---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 5555544443334444444333 3332211 222245567788899999999999999998888777776655432
Q ss_pred HHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCc-------cchhhhHHHHHHHHHHHHHHHHHHHH
Q 011565 366 FFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPIN-------IKGVGGSLTTLVNWFGAWAISYTFNF 438 (483)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~~~~~g~ 438 (483)
+..+.+......++.+.+.+...+...++..|..|.+ .+|...|+.++...+|..+++.+.+.
T Consensus 315 ----------~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 315 ----------SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333444455556666666667777777776543 45999999999999999999999988
Q ss_pred HHh
Q 011565 439 LET 441 (483)
Q Consensus 439 ~~~ 441 (483)
+.+
T Consensus 385 ~l~ 387 (448)
T PRK09848 385 ILG 387 (448)
T ss_pred HHH
Confidence 765
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-21 Score=175.11 Aligned_cols=369 Identities=15% Similarity=0.082 Sum_probs=222.8
Q ss_pred cccccccCcchHHHHh-hhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHH--HHHHH-HHHHh---
Q 011565 63 GTGVGYSSPTQNAIRE-DLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVC--IAGWL-AIYFS--- 135 (483)
Q Consensus 63 ~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~--~~~~~-~~~~~--- 135 (483)
.+..+...|..+...+ +.|+|.+|+|.+.++..+...+.+++.|.++||+|.||-++...... ..+.+ ...+.
T Consensus 20 Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll 99 (412)
T PF01306_consen 20 FFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLL 99 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777775555 58999999999999999999999999999999999777654433222 22222 22232
Q ss_pred -hchh-HHHHHHHHhhhcccccccccchhhhcccCc--cchhhHHhHHHHHHHHHHHHHHHhhccchhHHHHHHhHHHHH
Q 011565 136 -EGAL-SLDLGRLATGYGMGIFSYVVPVFTAEIAPK--ELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCA 211 (483)
Q Consensus 136 -~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~iG~~~~~~l~~~~~wr~~f~~~~~~~~ 211 (483)
.|++ ..+++-+..|+......|+.-+++.++..+ -|-|++=.+-+.++.++..+++.+.. .+-+..||+....++
T Consensus 100 ~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~ 178 (412)
T PF01306_consen 100 QSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAI 178 (412)
T ss_dssp HTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHH
Confidence 2332 234444555555555566666666555321 12255555555555555555554443 355678888666655
Q ss_pred HHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHh
Q 011565 212 VLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGL 290 (483)
Q Consensus 212 ~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (483)
+..++ ++.-|+.++....++..+ +++++.+.+...+++|+|++|...+....
T Consensus 179 il~lll~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g 231 (412)
T PF01306_consen 179 ILLLLLLLLKPDVPPQAEVADALG---------------------------AKKDKVSLKDVLSLFKMRNFWFFVLFVIG 231 (412)
T ss_dssp HHHHHHHSS---SSSSS-SSTTSS---------------------------S------HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCchhhhhhcccc---------------------------cCCCCCcHHHHHHHhcchhHHHHHHHHHH
Confidence 54444 333333322100000000 00011122345677888888876665554
Q ss_pred hhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHH
Q 011565 291 MVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFF 367 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (483)
....+......++.|...+++..+.+. +.....--+..++...+..++.+|+|.|+.+.++..++.+=....++.
T Consensus 232 ~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-- 309 (412)
T PF01306_consen 232 VAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-- 309 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--
Confidence 444433333334444443332222222 223333345667888899999999999999999988888887777764
Q ss_pred HHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHH-HHHHHHHHHHHHHHHHHHHh-hhhh
Q 011565 368 LKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLT-TLVNWFGAWAISYTFNFLET-WSSY 445 (483)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~~~~-~~~~ 445 (483)
.+.+.+...-++-+.-.........-++.+.+|++..++...+. +...++|.++.+.+.|.+.| .|..
T Consensus 310 ----------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~ 379 (412)
T PF01306_consen 310 ----------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ 379 (412)
T ss_dssp -----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence 45555666666655555555556678999999999988999885 67789999999999999999 6667
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCC
Q 011565 446 GTFLLYAAVNILGIVFITTVVPETKG 471 (483)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (483)
.++++.+.+.+...++..+.+++.++
T Consensus 380 ~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 380 HTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCc
Confidence 78888888888777777777765544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-19 Score=169.81 Aligned_cols=354 Identities=16% Similarity=0.147 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHH-HHHHHHHHHHHHHHh-h-chhHHHHHHHHhhhcccccccccch
Q 011565 85 AEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRV-SSFVCIAGWLAIYFS-E-GALSLDLGRLATGYGMGIFSYVVPV 161 (483)
Q Consensus 85 ~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (483)
+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999998776654 555555666666663 3 3444455566666777778888899
Q ss_pred hhhcccCccch--------------------------hhHHhHHHHHHHHHHHHHHHhhc------------cchhHHHH
Q 011565 162 FTAEIAPKELR--------------------------GALTSANQLLIVIGASTFFIIGT------------VATWRTLA 203 (483)
Q Consensus 162 ~i~~~~~~~~r--------------------------g~~~~~~~~~~~iG~~~~~~l~~------------~~~wr~~f 203 (483)
++.|..+++++ ++..+.-.....+|.++.-.+.- ..+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999988888 88888877777777776554432 12358888
Q ss_pred HHhHHHHHH-HHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcc
Q 011565 204 LVGVIPCAV-LLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLH 282 (483)
Q Consensus 204 ~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (483)
.+.++.-++ .+..++++||.|+....+....-..... ++-...++++.|.|...
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~-------------------------~~l~~t~k~~~~~~~~~ 284 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF-------------------------KRLWRTFKEIRKLRQLF 284 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH-------------------------HHHHHHHHHHHhChHHH
Confidence 887766554 5666888888764100000000001111 11122334444444444
Q ss_pred hHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCc--cchhhHhHHHHH
Q 011565 283 SVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRK--PLLLFAATGLLL 357 (483)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~ 357 (483)
..++..+++.-...........|... ..+++.. ...+...+.+++|+++.+++.||+|.| +++..+.....+
T Consensus 285 ~fLia~~l~~dg~~ti~~~~~i~a~~---~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~ 361 (477)
T PF11700_consen 285 LFLIAYFLYSDGVNTIISFAGIYATE---VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII 361 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 44444444444333333333333333 3466643 455666788899999999999999998 666665554433
Q ss_pred HHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 011565 358 GCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFN 437 (483)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 437 (483)
..+...+...... ....+.+.+.+..++.|.+.++..+..-++.+++.|+++.+...|++...+...+.+||.+.|
T Consensus 362 i~~~g~~G~~~~~----~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g 437 (477)
T PF11700_consen 362 IPLYGLFGFWPSF----FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG 437 (477)
T ss_pred HHHHHHHHhhhcc----cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222110100 011344556667778888888889999999999999999999999999999999999999999
Q ss_pred HHHh-hh-hhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 011565 438 FLET-WS-SYGTFLLYAAVNILGIVFITTVVPETKG 471 (483)
Q Consensus 438 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (483)
.+.+ .+ ....+....++.+++.++ +...+..|+
T Consensus 438 ~i~~~tg~~r~g~~~l~~lf~~gl~l-l~~v~~~~g 472 (477)
T PF11700_consen 438 LITDATGSQRYGFLFLLVLFLIGLIL-LFFVDVEKG 472 (477)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHH-Hhhccchhh
Confidence 9998 33 344444445554444444 344444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-19 Score=163.67 Aligned_cols=327 Identities=16% Similarity=0.132 Sum_probs=240.0
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh----hchh-HHHHHHHHHHHHHHHHHHHhhc------hhHHHH
Q 011565 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF----IGRK-GAMRVSSFVCIAGWLAIYFSEG------ALSLDL 143 (483)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~ 143 (483)
.+.+.+|+++..+|.+..+--+--++.-|+.|.+.|| +||| +.++.+.+-.++.+.++-.+++ .....+
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 4667889999999999999999999999999999995 7875 5567788889998888888773 445577
Q ss_pred HHHHhhhcccccccccchhhhccc-CccchhhHHhHHHHHHHHHHHHHHHhhc-----------cchhHHHHHHhHHHHH
Q 011565 144 GRLATGYGMGIFSYVVPVFTAEIA-PKELRGALTSANQLLIVIGASTFFIIGT-----------VATWRTLALVGVIPCA 211 (483)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~iG~~~~~~l~~-----------~~~wr~~f~~~~~~~~ 211 (483)
...+.+++.......-.++..|.. +++||.+..++-+.+..+|..+...+.. ..||+....+.+++++
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 788899999988888889999988 5788999999998888888665443321 3478888888777766
Q ss_pred HHH-HHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHh
Q 011565 212 VLL-LGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGL 290 (483)
Q Consensus 212 ~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (483)
+.. .+++-.+|.+.. +.+.+ +..+.+.+..+..+++|+.+..+.+...+
T Consensus 198 i~~l~~~~~v~ER~~~---~~~~~---------------------------~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~ 247 (467)
T COG2211 198 ILLLFCFFNVKERVVE---TQPTK---------------------------TGVKLKLKDSFLLIFKNRPLLLLLLMNLL 247 (467)
T ss_pred HHHHHHHHHhhcccCc---cccCc---------------------------ccccccHHHHHHHHHccchHHHHHHHHHH
Confidence 644 446667775420 00000 00112223344567788877776665555
Q ss_pred hhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHh
Q 011565 291 MVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKT 370 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (483)
.............+|....++.....+...........+++.++..++.+|+|+|++..++.++.+++.+.+.+.
T Consensus 248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~----- 322 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT----- 322 (467)
T ss_pred HHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh-----
Confidence 555555445555666655553333333445555566677778999999999999999999999999988888875
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC-------CccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 371 YGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP-------INIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
+..+...+++..++.+.+.+...+..+++++|... .+..|...|.+.++..+|.+++..+.|+..+
T Consensus 323 -----~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 323 -----PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred -----cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445556666677777888888899999998753 3455999999999999999999999998876
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=167.91 Aligned_cols=321 Identities=12% Similarity=0.055 Sum_probs=202.3
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh----hchhHH-HHHHHHHHHHHHHHHHHhhc------hhHHHH
Q 011565 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF----IGRKGA-MRVSSFVCIAGWLAIYFSEG------ALSLDL 143 (483)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~ 143 (483)
.+.+.+|+++..+|.+..+.-+--++..|+.|.++|| +||||. ++++....+++.+++-..|+ ...+.+
T Consensus 35 fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~ 114 (460)
T PRK11462 35 FYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI 114 (460)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence 4667889999999999999999999999999999995 688655 55677777777776655553 344566
Q ss_pred HHHHhhhcccccccccchhhhcccC-ccchhhHHhHHHHHHHHHHHHHHHhhc-----------cchhHHHHHHhHHHHH
Q 011565 144 GRLATGYGMGIFSYVVPVFTAEIAP-KELRGALTSANQLLIVIGASTFFIIGT-----------VATWRTLALVGVIPCA 211 (483)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~iG~~~~~~l~~-----------~~~wr~~f~~~~~~~~ 211 (483)
.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+.. ..+|+....+.+++.+
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~ 194 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF 194 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 6677788888888888889999885 789999999999888888766654422 1357777766666655
Q ss_pred HHHH-HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHh
Q 011565 212 VLLL-GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGL 290 (483)
Q Consensus 212 ~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (483)
++.+ .+...+|.++. + + ++...+..++..++|+.++.......+
T Consensus 195 i~~~i~~~~~kE~~~~-----~-~-----------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~ 239 (460)
T PRK11462 195 MMLAFCFFTTKERVEA-----P-P-----------------------------TTTSMREDLRDIWQNDQWRIVGLLTIF 239 (460)
T ss_pred HHHHHHHhcceeccCC-----C-c-----------------------------cCCCHHHHHHHHhCChHHHHHHHHHHH
Confidence 5443 34445554210 0 0 001112345566677766555444334
Q ss_pred hhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHh
Q 011565 291 MVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKT 370 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (483)
.............+|.....+... ..+.......+..+++.++++++.||+++|+....+.....+...++.+.
T Consensus 240 ~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~----- 313 (460)
T PRK11462 240 NILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV----- 313 (460)
T ss_pred HHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----
Confidence 333333333334444444332111 11233445567788899999999999999987765544333333222221
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC-------CccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 371 YGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP-------INIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
+ ..+........++.+.+.+...+..+++..|... .+..|...+.......+|..+++.+.|.+.+
T Consensus 314 ----~-~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 314 ----P-MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred ----c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112122223333444444444555666666644 3333666677778899999999999988876
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-18 Score=150.36 Aligned_cols=316 Identities=15% Similarity=0.124 Sum_probs=217.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHH-HHHHHHHHHHHHHHHHhhc--hh-HHHHHHHHhhhccccccccc
Q 011565 84 LAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAM-RVSSFVCIAGWLAIYFSEG--AL-SLDLGRLATGYGMGIFSYVV 159 (483)
Q Consensus 84 ~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~g~~~~~~ 159 (483)
.+.++...++..+..++..|+.|.++|+.|+||.. -+...+..++..+..++++ ++ ..++.-.+..++.......-
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 35578889999999999999999999999976655 4455556666666677665 44 45677788889998889999
Q ss_pred chhhhcccCccchhhHHhHHHHHHHHHHHHHHHhh------c----------------cchhHHHHHHhHHHHHH-HHHH
Q 011565 160 PVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG------T----------------VATWRTLALVGVIPCAV-LLLG 216 (483)
Q Consensus 160 ~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~------~----------------~~~wr~~f~~~~~~~~~-~~~~ 216 (483)
.+++.+..++++-++..++-.....+|..+.-+.. + ...=|..+.+.++..++ .+..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 99999999988877776655444444443332221 1 12467788887766555 5556
Q ss_pred hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhc
Q 011565 217 LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQF 296 (483)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (483)
++.+++.++-. ........ ..-++-+.+++++.+++.....++..+++.-...
T Consensus 217 ~~~v~~~~~~~--~~~~~~l~-------------------------~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~ 269 (438)
T COG2270 217 ILNVHDAEKIS--SPPPTALR-------------------------NGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVN 269 (438)
T ss_pred Hhccccccccc--ccchHHHH-------------------------HHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHH
Confidence 77777654300 00000000 0111224456666666666555555555444332
Q ss_pred cchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCC
Q 011565 297 GGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGL 373 (483)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (483)
+....-..|... ..|.+. ........+..++|+++.|++.||+|.|+++..+.++..+.++...+.
T Consensus 270 til~~~~~fg~~---~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-------- 338 (438)
T COG2270 270 TILAMGGVFGAA---DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-------- 338 (438)
T ss_pred HHHHHHHHHHHH---HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--------
Confidence 222222233222 346654 455666788899999999999999999999888887776665555443
Q ss_pred cccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 374 ALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
..........++.+...++.....-++..+++|+++.++..|+++..+...+..||...+.+.+
T Consensus 339 ----~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~ 402 (438)
T COG2270 339 ----EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ 402 (438)
T ss_pred ----cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 2344455556677888888888999999999999999999999999999999999999999988
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-19 Score=159.95 Aligned_cols=268 Identities=15% Similarity=0.076 Sum_probs=180.3
Q ss_pred HHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc----------------
Q 011565 133 YFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV---------------- 196 (483)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~---------------- 196 (483)
+...+++.++++-++.|.|.+...+..+.++.+..+++++.+.+++.+..+++|..++|.+++.
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3567899999999999999999999999999999999999999999999999999999998871
Q ss_pred ----chhHHHHHHhHHHHHHHHHHhhc--CCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchh
Q 011565 197 ----ATWRTLALVGVIPCAVLLLGLFL--IPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKA 270 (483)
Q Consensus 197 ----~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (483)
.+|+++|++.+.+.++..+.+.+ +||..+ ++.++. .+++ ..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~--------------------------~~~~--~~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV--------------------------SSGD--TT 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc--------------------------cccc--cc
Confidence 36999999755554443333333 454311 000000 0000 00
Q ss_pred hhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 011565 271 RLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPL 347 (483)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 347 (483)
+.++.++++..+...+..+++.........+.+.|+.+. +..+.+. +.....+..+.++|+++++++.||+++|+.
T Consensus 132 ~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~-~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~ 210 (310)
T TIGR01272 132 QKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDP-HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY 210 (310)
T ss_pred chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 111244555555555555555555555555566555422 1124443 445566677888999999999999999998
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHH
Q 011565 348 LLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWF 427 (483)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 427 (483)
+..+..+..++.++.... ...... ....+.+++.+..+|...+...+..|+ +.+++.++. ..+.+
T Consensus 211 l~~~~~l~~~~~~l~~~~------------~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~ 275 (310)
T TIGR01272 211 LAFNAFLAVLLSIGAALT------------HGYVAM-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIV 275 (310)
T ss_pred HHHHHHHHHHHHHHHHHc------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHh
Confidence 877776666655333321 112222 234456677777888888888888775 356677775 56789
Q ss_pred HHHHHHHHHHHHHh-hhhhHHHH
Q 011565 428 GAWAISYTFNFLET-WSSYGTFL 449 (483)
Q Consensus 428 g~~~~~~~~g~~~~-~~~~~~~~ 449 (483)
|+++.|.+.|.+.| .+....++
T Consensus 276 Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 276 GGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred cchHHHHHHHHHHHhccchHHHH
Confidence 99999999999988 55444444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-17 Score=147.91 Aligned_cols=392 Identities=14% Similarity=0.045 Sum_probs=251.5
Q ss_pred CcchHHHHhhhc----CchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-chhHHHHHHHHHHHHHHHHHHHhh--chhHHH
Q 011565 70 SPTQNAIREDLS----LSLAEYSVFGSILTFGAMIGAITSGPIADFI-GRKGAMRVSSFVCIAGWLAIYFSE--GALSLD 142 (483)
Q Consensus 70 ~~~~~~i~~~~~----~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 142 (483)
.++.-.+..+++ .++++..-+.+.|..-.-+..+++|+++||+ |+|++++.|.++..+|.+..+.++ +...+.
T Consensus 42 aiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~ 121 (498)
T COG3104 42 AILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLY 121 (498)
T ss_pred HHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHH
Confidence 334445666666 9999999999999988889999999999996 999999999999999999999984 788999
Q ss_pred HHHHHhhhcccccccccchhhhcccCccc--hhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH
Q 011565 143 LGRLATGYGMGIFSYVVPVFTAEIAPKEL--RGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~ 216 (483)
++-++.++|.|..-+...++++|.+|+++ |-..++++.++.++|..++|.+.+ ..||+..|.+.++-....++.
T Consensus 122 i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 122 IGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred HHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997543 556778888888888888887766 678999999988877776665
Q ss_pred hhcCCCC---------hhHHHhhCCHHHHHHHHHHHhcC---cccchHHHHHHHH---------HHHHHccCch--hhhH
Q 011565 217 LFLIPES---------PRWLAKIGKHEEFEAALQKLRGK---DADISQEATEIQE---------YIETLERLPK--ARLL 273 (483)
Q Consensus 217 ~~~~~e~---------p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~--~~~~ 273 (483)
+...+.. |..+..+.............-.. .....+....... ...+..+.++ .+-+
T Consensus 202 f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~ 281 (498)
T COG3104 202 FLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERR 281 (498)
T ss_pred HHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHH
Confidence 5444321 11010000000000100000000 0000000000000 0000000111 1111
Q ss_pred HhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHc--C--CCCchHHHHHHHHHHHHHHHHHHHHhhcCCc----
Q 011565 274 DLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTA--G--LSPSTGTISYALLQVVVTFFNIIMIDRAGRK---- 345 (483)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---- 345 (483)
+++ ...++++...+.+..+-...+.+..|.....+.. | .++.+......+.-++..++..++..|.+++
T Consensus 282 r~~---~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~p 358 (498)
T COG3104 282 RLL---AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQP 358 (498)
T ss_pred HHH---HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCC
Confidence 111 1223444444555555555566666666554433 2 3456666777777778887777777774332
Q ss_pred -cc--hhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHH
Q 011565 346 -PL--LLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTT 422 (483)
Q Consensus 346 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 422 (483)
.. ..++..++..+++++......... +....+.++++...++..++.....|+..+++..+.|+...+..+++..
T Consensus 359 s~~~KFalGl~l~g~~fl~l~~~~~~~~~--~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wf 436 (498)
T COG3104 359 STPIKFALGLILAGLGFLILLLAGIWFGG--PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWF 436 (498)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHH
Confidence 11 234445555555555544222221 1344677888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-------HHhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 011565 423 LVNWFGAWAISYTFNF-------LETWSSYGTFLLYAAVNILGIVFITTVV 466 (483)
Q Consensus 423 ~~~~~g~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (483)
.....|+.++..+.+. .........|..++.+.++.........
T Consensus 437 Lt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 437 LTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred HHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 8888888888887773 2123444556666666666555544433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=157.38 Aligned_cols=171 Identities=18% Similarity=0.159 Sum_probs=133.7
Q ss_pred HHHHhhhhhcccccccCcchHHHHhh--hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhch-hHHHHHHHHHHHHHHH
Q 011565 54 VAVSGSYSFGTGVGYSSPTQNAIRED--LSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGR-KGAMRVSSFVCIAGWL 130 (483)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~~~~~~~~~~~~~~ 130 (483)
+..+.+++.....+.+.+..-++.++ .+.+.+..||+.++..++.+++++..|+.+.|.++ |+.++.|.++..++++
T Consensus 38 l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~l 117 (488)
T KOG2325|consen 38 LALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNL 117 (488)
T ss_pred HHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHH
Confidence 34444555666666666665555555 67778889999999999999999999999999997 8889999999999999
Q ss_pred HH-HHh---h-chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhccc------h-
Q 011565 131 AI-YFS---E-GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVA------T- 198 (483)
Q Consensus 131 ~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~------~- 198 (483)
+. ++. + ..+.++++|++.|+|.| ......+|+++....++|.++++....+..+|..+||.++..+ |
T Consensus 118 lY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~ 196 (488)
T KOG2325|consen 118 LYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF 196 (488)
T ss_pred HHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce
Confidence 98 432 3 67789999999999986 5678889999998899999999999888888888887765411 1
Q ss_pred ----------hHHHHHHhHHHHHHHH-HHhhcCCCChh
Q 011565 199 ----------WRTLALVGVIPCAVLL-LGLFLIPESPR 225 (483)
Q Consensus 199 ----------wr~~f~~~~~~~~~~~-~~~~~~~e~p~ 225 (483)
+..+-|+.+++.++.+ .+.++++|.++
T Consensus 197 ~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 197 MILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred EEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 3456677777777744 44677788654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=136.29 Aligned_cols=324 Identities=13% Similarity=0.036 Sum_probs=222.2
Q ss_pred HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhc-----hhHHHHH-HHHHHHHHHHHHHHh-----h-------c
Q 011565 76 IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIG-----RKGAMRV-SSFVCIAGWLAIYFS-----E-------G 137 (483)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~-------~ 137 (483)
+..|++++..-.+.+.+...+... ..+.+|+.+|+.+ ||..+++ |..+...+..+..++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 667899999999999988877665 6999999999999 8876655 666666666666543 2 1
Q ss_pred h--h--HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc----c-hhHHHHHHh--
Q 011565 138 A--L--SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV----A-TWRTLALVG-- 206 (483)
Q Consensus 138 ~--~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~----~-~wr~~f~~~-- 206 (483)
. + ...+.-.+.|+|.+.......+++.|..|+++|+++.++......+|.+++..+.+. + .-|..-.+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 2 2 235567788999999999999999999999999999999999999999999887762 1 223222222
Q ss_pred HHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHH
Q 011565 207 VIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTI 286 (483)
Q Consensus 207 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (483)
++..+...++..+-.|.+.....+. .++++......++++..+|..++.+.
T Consensus 165 a~i~~~l~~ia~wg~E~r~~~~~~~-----------------------------~~~~~~~f~~a~~~~~~~~~a~~f~~ 215 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRRSRRAAA-----------------------------AERPRPPFREAWRQVWASPQARRFFV 215 (403)
T ss_pred HHHHHHHHHHHHHhcccCCcccccC-----------------------------CCCCCccHHHHHHHHHhCCChhHHHH
Confidence 2222222222233333321000000 00112233455667777888877776
Q ss_pred HHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHh-hcCCccchhhHhHHHHHHHHHH
Q 011565 287 GVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMID-RAGRKPLLLFAATGLLLGCLLL 362 (483)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~ 362 (483)
..++..+.++.-...+.-|--+++ |.+.+ ......+.+.++|....+++.. |.++++...+++....+++.++
T Consensus 216 fl~l~t~a~~~QD~iLEPygg~Vf---gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGGEVF---GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI 292 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchhHHc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 666655554443333444444443 55543 4555667788888888888766 6788888888888888877776
Q ss_pred HHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 363 AAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
..... ..+.+.+.....+.|++.+.+.....+.+.++.++++.|..+|.....+.+...++..++|.+.|
T Consensus 293 i~a~~---------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 293 ILAGP---------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHHHh---------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66521 23345555666666777666666667888899888999999999999999999999999999888
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-19 Score=172.66 Aligned_cols=380 Identities=13% Similarity=0.145 Sum_probs=3.0
Q ss_pred HHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Q 011565 55 AVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF 134 (483)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 134 (483)
.++..+...+..+.....+..|++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++++++++++++
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 34444555667777888888999999999999999999999999999999999999988888999999999999999875
Q ss_pred hh--------------------------------------------------chhHHHHHHHHhhhcccccccccchhhh
Q 011565 135 SE--------------------------------------------------GALSLDLGRLATGYGMGIFSYVVPVFTA 164 (483)
Q Consensus 135 ~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (483)
-+ -++.+++++++.|+|....++...+|+-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 10 1456789999999999999999999999
Q ss_pred cccCccchhhHHhHHHHHHHHHHHHHHHhhccc--------------------------hhHHHHHHhHHHHHHHHHHhh
Q 011565 165 EIAPKELRGALTSANQLLIVIGASTFFIIGTVA--------------------------TWRTLALVGVIPCAVLLLGLF 218 (483)
Q Consensus 165 ~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~--------------------------~wr~~f~~~~~~~~~~~~~~~ 218 (483)
|..++++-+...|+......+|+++|.++++.. .|-.-|++.+...++..+.++
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~ 247 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF 247 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888610 154555555555555555556
Q ss_pred cCCCC-hhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhcc
Q 011565 219 LIPES-PRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFG 297 (483)
Q Consensus 219 ~~~e~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (483)
++|+. |.... ..++.+....+....+.+...+. +.........+.-....+++++|+.+....+.........
T Consensus 248 ~FPk~lp~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~-- 321 (539)
T PF03137_consen 248 FFPKKLPGTSE---RQEEKESSERKEEDSDKDSFKDP-KSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIV-- 321 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCccCCCccc---ccchhhhhhcchhhhhhhccccc-ccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHH--
Confidence 66655 32200 00000000000000000000000 0000011122334556677788876655555544444443
Q ss_pred chhhhHHhHHHHHHH-cCCCCchHHHHHHH----HHHHHHHHHHHHHhhcC--CccchhhHhHHHHHHHHHHHHHHHHH-
Q 011565 298 GINAIAFYAANIFQT-AGLSPSTGTISYAL----LQVVVTFFNIIMIDRAG--RKPLLLFAATGLLLGCLLLAAAFFLK- 369 (483)
Q Consensus 298 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~- 369 (483)
..+..|.|.+++. .+.+++......++ +..+|.+++|++.+|++ .|..+.+..+...++.++........
T Consensus 322 --~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C 399 (539)
T PF03137_consen 322 --SGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGC 399 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecC
Confidence 4444555554442 25554444444333 55688999999999875 44555544444444443311111110
Q ss_pred ----------hc----------C------C----------c----cc-ccchHHHHHHHHHHHHhhcccccchhhhcccc
Q 011565 370 ----------TY----------G------L----------A----LE-SVPALTLAGVLVYIGSFSSGMGATPWVLMSEI 408 (483)
Q Consensus 370 ----------~~----------~------~----------~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (483)
.+ + . . .. ........+...+..+................
T Consensus 400 ~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~ 479 (539)
T PF03137_consen 400 PNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRC 479 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeecc
Confidence 00 0 0 0 00 01112222222222222222333334556688
Q ss_pred CCCccchhhhHHHHHHH-HHHHHHHHHHHHHHHhh
Q 011565 409 FPINIKGVGGSLTTLVN-WFGAWAISYTFNFLETW 442 (483)
Q Consensus 409 ~p~~~~~~~~g~~~~~~-~~g~~~~~~~~g~~~~~ 442 (483)
+|+++|+.+.|+...+. -+|.+-+|.++|.+.|.
T Consensus 480 V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 480 VPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------
T ss_pred CChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 89999999999998775 56889999999999883
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=147.38 Aligned_cols=379 Identities=13% Similarity=0.128 Sum_probs=250.7
Q ss_pred HHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHH
Q 011565 50 LSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGW 129 (483)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~ 129 (483)
..+.+.++..+..++..+.+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|.+++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 33455566667777777888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh--------------------h-----------------------------c--hh-HHHHHHHHhhhccccccc
Q 011565 130 LAIYFS--------------------E-----------------------------G--AL-SLDLGRLATGYGMGIFSY 157 (483)
Q Consensus 130 ~~~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~g~~~~ 157 (483)
+++++- + + ++ .++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 999861 0 0 23 468889999999999999
Q ss_pred ccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc-------c----------------hhHHHHHHhHHHHHHHH
Q 011565 158 VVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV-------A----------------TWRTLALVGVIPCAVLL 214 (483)
Q Consensus 158 ~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~-------~----------------~wr~~f~~~~~~~~~~~ 214 (483)
...+|+-|...+++-...+|+......+|+++|.++++. + -|..-|++.+.+.++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998871 1 17777777777777777
Q ss_pred HHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhh
Q 011565 215 LGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQ 294 (483)
Q Consensus 215 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (483)
+.++++|...+. .++..+++ ..+..+.++..... .....+.-++-+...+++++|+.+....+...+.
T Consensus 337 ~p~f~fPk~lp~---~~~~~~~~-~~~~~k~~~~~~~~-----~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~--- 404 (735)
T KOG3626|consen 337 VPLFFFPKELPK---SQKRKRAR-DLHVLKTESGGAKS-----DKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIE--- 404 (735)
T ss_pred HHHHhCcccCcc---ccccchhh-hhcccccccccccC-----CcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHH---
Confidence 777777765321 11100000 00000000000000 0000001122345567777777655444444443
Q ss_pred hccchhhhHHhHHHHHHH-cCCCCchHHHHHHHH----HHHHHHHHHHHHhhcCC--ccchhhHhHHHHHHHHHHHHHHH
Q 011565 295 QFGGINAIAFYAANIFQT-AGLSPSTGTISYALL----QVVVTFFNIIMIDRAGR--KPLLLFAATGLLLGCLLLAAAFF 367 (483)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 367 (483)
...+..+..|+|.+++. .+.++..+....+.. ..+|.+++|++.+|+.. |....+.++...+..+.....++
T Consensus 405 -~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~ 483 (735)
T KOG3626|consen 405 -SLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFF 483 (735)
T ss_pred -HHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHE
Confidence 44455566666666653 477776665555443 34778889999998753 44555555444444444222222
Q ss_pred HH----------------------h-----c---------------------------------CCc-------------
Q 011565 368 LK----------------------T-----Y---------------------------------GLA------------- 374 (483)
Q Consensus 368 ~~----------------------~-----~---------------------------------~~~------------- 374 (483)
.+ . + +..
T Consensus 484 igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv 563 (735)
T KOG3626|consen 484 IGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCV 563 (735)
T ss_pred ecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeecccccc
Confidence 10 0 0 000
Q ss_pred c----------------c-ccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHH-HHHHHHHHHHH
Q 011565 375 L----------------E-SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVN-WFGAWAISYTF 436 (483)
Q Consensus 375 ~----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~ 436 (483)
+ + ......+++.+++..+.........+.++...+|++.|..++|+..+.. -+|.+-+|.++
T Consensus 564 ~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIif 643 (735)
T KOG3626|consen 564 PTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIF 643 (735)
T ss_pred ccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhh
Confidence 0 0 0111223333333333333333445677788899999999999998875 66888999999
Q ss_pred HHHHh
Q 011565 437 NFLET 441 (483)
Q Consensus 437 g~~~~ 441 (483)
|++.|
T Consensus 644 G~~ID 648 (735)
T KOG3626|consen 644 GAVID 648 (735)
T ss_pred hhhHh
Confidence 99987
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=153.91 Aligned_cols=175 Identities=14% Similarity=0.048 Sum_probs=131.2
Q ss_pred cchHHH-HhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHH---HHHhhchhHHHHHHH
Q 011565 71 PTQNAI-REDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLA---IYFSEGALSLDLGRL 146 (483)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~ 146 (483)
..+|.+ .+++|.+..+.++..+...++..++.+..|+++||+|||+++..+.++..++.+. ...+++...++++++
T Consensus 271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
T PRK10642 271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLL 350 (490)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345544 4678999888888888999999999999999999999999988877654443332 223456777888999
Q ss_pred HhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-----cchhHHHHHHhHHHHHHHHHHhhcCC
Q 011565 147 ATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT-----VATWRTLALVGVIPCAVLLLGLFLIP 221 (483)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (483)
+.|++.+........++.|.+|++.|+.++++......++..++|.+.+ ..+|+..+++..+.+++.++..+++|
T Consensus 351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9998877777777888899999999999998643333344455555544 23578777776667777666667789
Q ss_pred CChhHHHhh-----CCHHHHHHHHHHHhc
Q 011565 222 ESPRWLAKI-----GKHEEFEAALQKLRG 245 (483)
Q Consensus 222 e~p~~~~~~-----~~~~~~~~~~~~~~~ 245 (483)
|+|+|+.++ ++.+|+++.+.++++
T Consensus 431 es~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 431 ETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccCCCCCCccccccchhhHHHHhhcccc
Confidence 999987654 888899998888863
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-15 Score=118.28 Aligned_cols=132 Identities=24% Similarity=0.294 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCcc
Q 011565 91 GSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKE 170 (483)
Q Consensus 91 ~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 170 (483)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+...+++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH-hhcCCC
Q 011565 171 LRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLG-LFLIPE 222 (483)
Q Consensus 171 ~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~-~~~~~e 222 (483)
+|++..++......+|..+++.+.+ ..+|++.+++.+...++..+. +++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999988887776 458999999977776665444 555555
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-13 Score=125.68 Aligned_cols=350 Identities=15% Similarity=0.096 Sum_probs=214.7
Q ss_pred HHHHHHhhhhhcccccccCcchHHHHhhhcCchh-HHHHHHH----HHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHH
Q 011565 52 TLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLA-EYSVFGS----ILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCI 126 (483)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~~~~s----~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 126 (483)
.....+-.+..++......+..+.....++.+.. ..+.... ...+...+.++..|.++||+|||..+....+...
T Consensus 24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~ 103 (463)
T KOG2816|consen 24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTI 103 (463)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHH
Confidence 3344444455555555555555555555543322 2233333 3467888999999999999999999999999998
Q ss_pred HHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHH
Q 011565 127 AGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTL 202 (483)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~ 202 (483)
+..+...+.. +|.++ .--+.|. .+.......++++|....++|....++....+..+..++|.+++ ..|.-..
T Consensus 104 l~~~~~~~~~-~~~~~-~~~l~g~-~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~ 180 (463)
T KOG2816|consen 104 LPALCLLFQG-YWFFL-LLGLSGG-FSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALV 180 (463)
T ss_pred HhHHHHHHHH-HHHhh-hcccccc-hhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHH
Confidence 8888888776 33333 2222222 23457778899999999999999999999977777777777776 5577788
Q ss_pred HHHhHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhh---c
Q 011565 203 ALVGVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQ---K 278 (483)
Q Consensus 203 f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 278 (483)
|.+..+..++..+. ++++||+-....++ + ...+......... ......++...+ +
T Consensus 181 f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~---~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 239 (463)
T KOG2816|consen 181 FLIAAASGILSLLYMLLFLPESLQEKERS---D---ATLRELTPGSLDS---------------SHVADAFQSLTKVGPD 239 (463)
T ss_pred HHHHHHHHHHHHHHHhhccccccCccccc---c---ccccccCCCcccc---------------hhhhhhhhhhcccCCC
Confidence 88888887776555 78899974211111 0 0000000000000 000001111111 1
Q ss_pred CCcchHHHHHHhhhhhhccchh-hhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHH-HHHhhcCCccchhhHhH
Q 011565 279 RYLHSVTIGVGLMVIQQFGGIN-AIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNI-IMIDRAGRKPLLLFAAT 353 (483)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~ 353 (483)
|....+.....+.......... ...+|+..- .+++. +......+....++.++.. .+...++.|+....|..
T Consensus 240 r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~---f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~ 316 (463)
T KOG2816|consen 240 RLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK---FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLL 316 (463)
T ss_pred ccchHHHHHHHHHHHHHhcCceeEEEEEEeee---cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHH
Confidence 2222211221221111111111 223333222 24544 3344455666667777666 67777898888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHH
Q 011565 354 GLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAIS 433 (483)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (483)
...+......+. ...+ ..........+.....+...+.++...+++++|.+.++...+..+...++|
T Consensus 317 ~~~~~~~~~af~------------~~~w-~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~ 383 (463)
T KOG2816|consen 317 SEFLQLLLFAFA------------TETW-MMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP 383 (463)
T ss_pred HHHHHHHHHHHh------------ccch-hhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence 888888888775 2222 222333344455566677788889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 011565 434 YTFNFLET 441 (483)
Q Consensus 434 ~~~g~~~~ 441 (483)
.+.+.+..
T Consensus 384 ~~~~~i~~ 391 (463)
T KOG2816|consen 384 ALYGNIFA 391 (463)
T ss_pred HHHHHHHH
Confidence 99988755
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=130.44 Aligned_cols=150 Identities=14% Similarity=0.121 Sum_probs=122.3
Q ss_pred chH-HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhh
Q 011565 72 TQN-AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGY 150 (483)
Q Consensus 72 ~~~-~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (483)
..| .+++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+.......+++.+.+++.+++.++
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344 4567789999999999888888888999999999999999998888777666655555667788888889999988
Q ss_pred cccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCCC
Q 011565 151 GMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIPE 222 (483)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (483)
+.|...+....+..|.+|+ +|++++++.+....+|..+++.+++ ..+|+..|++.++..++.++..++.||
T Consensus 318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8877777777888898875 5899999988888888888887776 468999999888888887777666665
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=137.55 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=120.6
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccc
Q 011565 79 DLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYV 158 (483)
Q Consensus 79 ~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (483)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778999999999999999999999999999999999999999999999999999999999999999998888788
Q ss_pred cchhhhcccCccchhhHHhH-HHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHH-HHhhcCCCCh
Q 011565 159 VPVFTAEIAPKELRGALTSA-NQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLL-LGLFLIPESP 224 (483)
Q Consensus 159 ~~~~i~~~~~~~~rg~~~~~-~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p 224 (483)
...++.|.+|++.|+...+. ++....+|.++++.+.+ ..|||..|.+.+++.++.. +.++.+++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88899999999988876554 55666777777776665 5689999998777766544 4455555543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-14 Score=134.68 Aligned_cols=151 Identities=18% Similarity=0.188 Sum_probs=124.0
Q ss_pred hHHHHhhhcCch--------hHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh----chhH
Q 011565 73 QNAIREDLSLSL--------AEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE----GALS 140 (483)
Q Consensus 73 ~~~i~~~~~~s~--------~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~ 140 (483)
.+...++.|.++ ++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.
T Consensus 231 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~ 310 (418)
T TIGR00889 231 GNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYAL 310 (418)
T ss_pred HHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence 344556666443 6679999999999999999999999999999999999999988877776632 2456
Q ss_pred HHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHH-HHHHHHHHHHHHhhc----c------chhHHHHHHhHHH
Q 011565 141 LDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQ-LLIVIGASTFFIIGT----V------ATWRTLALVGVIP 209 (483)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~iG~~~~~~l~~----~------~~wr~~f~~~~~~ 209 (483)
+++.+++.|++.+...+....++.|++|+++|++++++.+ ....+|..+||.+++ . .||+..|.+.++.
T Consensus 311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~ 390 (418)
T TIGR00889 311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGY 390 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 7788999999999888888999999999999999999997 567888888888876 2 4699999987777
Q ss_pred HHHH-HHHhhcCCCC
Q 011565 210 CAVL-LLGLFLIPES 223 (483)
Q Consensus 210 ~~~~-~~~~~~~~e~ 223 (483)
.++. ++.++++||+
T Consensus 391 ~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 391 IAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHhCCc
Confidence 6664 4456777776
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=130.06 Aligned_cols=143 Identities=15% Similarity=0.007 Sum_probs=122.5
Q ss_pred chHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHhh
Q 011565 72 TQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGA--LSLDLGRLATG 149 (483)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G 149 (483)
..+.+.+++|.++.+.+++.+.+.++..+++++.|++.||+|||+.+.++..+.+++.++..+.++. ..+++..++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 3445678899999999999999999999999999999999999999999999999988888777643 33456678889
Q ss_pred hcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHH
Q 011565 150 YGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLL 214 (483)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~ 214 (483)
++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+ ..||++.|++.++..++.+
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 8888888888889999999999999999999999999999988766 5689999998777666543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=135.93 Aligned_cols=138 Identities=17% Similarity=0.051 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcc
Q 011565 87 YSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEI 166 (483)
Q Consensus 87 ~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 166 (483)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++.+.+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677899999999999999999999999999999999999999999988899999999998888899999999999
Q ss_pred cCccchhhHHhHHHHHHHHHHHHHHHhhcc---chhHHHHHHhHHHHHHHHHHhhcCCCCh
Q 011565 167 APKELRGALTSANQLLIVIGASTFFIIGTV---ATWRTLALVGVIPCAVLLLGLFLIPESP 224 (483)
Q Consensus 167 ~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~---~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (483)
+|.++|++++|+......+|.+++|.+++. .+...+|++.+++.+++.++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999988762 3445677777777777666666779874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-13 Score=126.93 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=123.9
Q ss_pred chHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhc
Q 011565 72 TQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYG 151 (483)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (483)
.++.+.++.|. ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++
T Consensus 238 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 238 FITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred HHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444455565 3456777888999999999999999999999999999999898888888888988888999999999
Q ss_pred ccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCCCC
Q 011565 152 MGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIPES 223 (483)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (483)
.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+ ..||++.|++.++..++..+...+++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99888888888889999999999999999988888877776655 4589999999888777766654445443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=124.41 Aligned_cols=147 Identities=15% Similarity=0.134 Sum_probs=123.1
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccc
Q 011565 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGI 154 (483)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (483)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..+...+.++.+.+.+.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999998888888888999999999999999999888877776666666778888888899999999988
Q ss_pred cccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCCC
Q 011565 155 FSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIPE 222 (483)
Q Consensus 155 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (483)
..+....++.|..|+ +++++.++.+....+|..++|.+.+ ..||+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888888899998875 5679999998888888888887766 468999999988888777766666554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=123.03 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=138.3
Q ss_pred cccccccCcchHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhH-HHHHHHHHHHHHHHHHHHhhchhH
Q 011565 63 GTGVGYSSPTQNAIREDL-SLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKG-AMRVSSFVCIAGWLAIYFSEGALS 140 (483)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~-~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~ 140 (483)
...........|.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (352)
T cd06174 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267 (352)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 333444455566566655 899999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH
Q 011565 141 LDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~ 216 (483)
+.+..++.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+ ..+|++.+++.++..++..+.
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888876 468999999988888876665
Q ss_pred hhc
Q 011565 217 LFL 219 (483)
Q Consensus 217 ~~~ 219 (483)
.++
T Consensus 348 ~~~ 350 (352)
T cd06174 348 LLL 350 (352)
T ss_pred hee
Confidence 444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-13 Score=128.55 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=125.5
Q ss_pred chHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhc
Q 011565 72 TQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYG 151 (483)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (483)
..|.+.++.|.++.+.+++.+.+.++..++.++.|++.||+|||+.+..+....+++.++..+.++.+.+.+..++.|++
T Consensus 242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (406)
T PRK11551 242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321 (406)
T ss_pred HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999999999999888777777777777788888888888899998
Q ss_pred ccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc-----chhHHHHHHhHHHHHHHHHHhhcC
Q 011565 152 MGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV-----ATWRTLALVGVIPCAVLLLGLFLI 220 (483)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~-----~~wr~~f~~~~~~~~~~~~~~~~~ 220 (483)
.++..+...+++.|.+|+++|++..++.+....+|..++|.+.+. .+|...++......++..+..+++
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999999988873 256666666666665555444433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-11 Score=107.70 Aligned_cols=238 Identities=13% Similarity=0.010 Sum_probs=152.5
Q ss_pred cCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q 011565 69 SSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLAT 148 (483)
Q Consensus 69 ~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (483)
.+|..-.+-+++|.+..|++.+....+...++..++.|.++||+|||+.-+...++.+++++ +-..++++.++++|++.
T Consensus 53 QGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlg 131 (354)
T PF05631_consen 53 QGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLG 131 (354)
T ss_pred hcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHH
Confidence 45665667789999999999999999999999999999999999999999999999998886 45568999999999999
Q ss_pred hhcccccccccchhhh-ccc----CccchhhHHhHHH-HHHHHHHHHHHHhh----ccc--hhHHHHHHhHHHHHHHHHH
Q 011565 149 GYGMGIFSYVVPVFTA-EIA----PKELRGALTSANQ-LLIVIGASTFFIIG----TVA--TWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 149 G~~~g~~~~~~~~~i~-~~~----~~~~rg~~~~~~~-~~~~iG~~~~~~l~----~~~--~wr~~f~~~~~~~~~~~~~ 216 (483)
|++....+.+--++.. |+- |++..+..++... ..+++-.+++..++ ... |-..+|....++.++..++
T Consensus 132 GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~ 211 (354)
T PF05631_consen 132 GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL 211 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999988887766553 442 2222233333222 22233333333333 333 3477888877777665444
Q ss_pred -hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhh
Q 011565 217 -LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQ 295 (483)
Q Consensus 217 -~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (483)
...-+|.... ..+..+ ..+.-+..++.+.++++.+. ......+..
T Consensus 212 I~~~W~ENyg~---~~~~~~----------------------------~~~~~~~a~~~i~~d~ril~---LG~~qslFE 257 (354)
T PF05631_consen 212 ILKTWPENYGD---TSSSSS----------------------------LSGSFREAWRAILSDPRILL---LGLIQSLFE 257 (354)
T ss_pred HHhcccccCCC---cccccc----------------------------hHHHHHHHHHHHHcCchhHH---HHHHHHHHH
Confidence 4444554320 000000 00111223445555665443 344444445
Q ss_pred ccchhhhHHhHHHHHHHc-CCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 011565 296 FGGINAIAFYAANIFQTA-GLSPSTGTISYALLQVVVTFFNIIMIDR 341 (483)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 341 (483)
...+.....|.|.+.... +..-+.+...+.+..++|+.+..++..+
T Consensus 258 ~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 258 GSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555556666777665221 2334677777778888888888665543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=121.88 Aligned_cols=347 Identities=15% Similarity=0.118 Sum_probs=191.4
Q ss_pred cchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhc-----hhHHHHHHHHHHHHHHHHHHHhh----chhHH
Q 011565 71 PTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIG-----RKGAMRVSSFVCIAGWLAIYFSE----GALSL 141 (483)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~~----~~~~l 141 (483)
+..+.+++++|+++++.....+...+... ..+++|.++|.+- ||+.++++.++.+++.+..+..+ +....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 34567899999999999998888877776 4678999999763 56666777777766666665543 46666
Q ss_pred HHHHHHhhhcccccccccchhhhcccC--ccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIAP--KELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLL 215 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~ 215 (483)
.+.-++..+|......++-+++.|... ++.||...+.......+|.+++..+++ ..++|..|.+.+++..+..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 677788889998899999999999883 334677888888888888888877776 55788889887776666544
Q ss_pred H-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHH-HHHhhhh
Q 011565 216 G-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTI-GVGLMVI 293 (483)
Q Consensus 216 ~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 293 (483)
. .+..+|.++ .++.+..... .+ .... .....++.....++.++.+..+...+ ..++...
T Consensus 170 ~~~~~~~e~~~--~~~~~~~~~~-------~~--~~~~--------~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 230 (433)
T PF03092_consen 170 VALFLLEERKV--RPADEVFSFG-------KE--EVPC--------LFGSFREQLSELWRALQQRAIWQPILFFIFFFNL 230 (433)
T ss_pred HHHHhhhhccc--cccchhhccc-------cc--ccch--------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4 444444211 0000000000 00 0000 00001112333445555665554444 2222222
Q ss_pred hhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhc----CCccchhhHhHHHHHHHHHHHHHHHHH
Q 011565 294 QQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRA----GRKPLLLFAATGLLLGCLLLAAAFFLK 369 (483)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (483)
..........++.....+..+++........ +.+.++.+++..+-+++ .-|+++.+..++.++..+.-... ..
T Consensus 231 ~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~-~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~l--v~ 307 (433)
T PF03092_consen 231 PPSISSASSFYFQTDALGGPHFSPSFYGTLS-IVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLL--VT 307 (433)
T ss_pred ccCCCCccEEEEEeccccccccCHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEE--EE
Confidence 2221111112222222222235554444443 44444444444444444 33444433333222211110000 00
Q ss_pred hcCCcc-cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 370 TYGLAL-ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 370 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
.++... -+..+..+.-..+........+.| ....++|+.|+...|+..++...+.++|..++..+...+.+
T Consensus 308 ~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP-~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 308 RWNLDLGIPDQWFALGDTILEEVIGMIAFMP-SLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred EEeeeeCcCCeEEEEEhHHHHHHHHHHHHHH-HHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 001111122222222222222223 34678899999999999999999999999999999888876
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=121.88 Aligned_cols=147 Identities=12% Similarity=0.031 Sum_probs=124.5
Q ss_pred CcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q 011565 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATG 149 (483)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (483)
....|.+.+|+|.++.+.|++.+...++..+..++.+++.||+|+|+.+.++.++.++..++.+++++.+.+++.+++.|
T Consensus 225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g 304 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC 304 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 33455566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccchhhhcccCccchhhHHhHHH-HHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhh
Q 011565 150 YGMGIFSYVVPVFTAEIAPKELRGALTSANQ-LLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLF 218 (483)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~ 218 (483)
++.+...+....++.+. |+++|++..++++ ....+|..+++.+++ ..|+ ..|++.+.++++..++..
T Consensus 305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 9999999898875 456777777777766 5565 556666666665544433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=122.40 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=121.6
Q ss_pred chHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhc
Q 011565 72 TQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYG 151 (483)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (483)
..+.+.++.|.+ +.++..+.+.++..+++++.|++.||+|+||.+..+..+.+++.++..+.++.+.+++..++.|++
T Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 315 (392)
T PRK12382 238 FVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAG 315 (392)
T ss_pred HHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455566655 356667778888899999999999999999999999999999988888888888888999999999
Q ss_pred ccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHh
Q 011565 152 MGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGL 217 (483)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~ 217 (483)
.+...+...+.+.|.+|+++||++.++.+....+|..+++.+.+ ..||++.|.+.++..++..+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 98888888888899999999999999999998888888887776 5689999999888777755543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=122.94 Aligned_cols=146 Identities=18% Similarity=0.058 Sum_probs=104.1
Q ss_pred HHcCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHH
Q 011565 311 QTAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVL 387 (483)
Q Consensus 311 ~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (483)
++.|.+... ......+..+++.+..|+++||+|||+.+..+.....++.+.+.+. ++.+.++...
T Consensus 36 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 103 (395)
T PRK10054 36 RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV------------NNVTLVVLFF 103 (395)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH------------hHHHHHHHHH
Confidence 445776544 4444566778889999999999999999888887777776655543 2233333333
Q ss_pred HHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc
Q 011565 388 VYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVP 467 (483)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
.+.+.......+...++..|..|+++|+++.|+.+...++|..++|.+.+++.+.++...+...+++.++..+...+..+
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 183 (395)
T PRK10054 104 ALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQ 183 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445667788899999999999999999999999999999999987766666777666666655444444444
Q ss_pred C
Q 011565 468 E 468 (483)
Q Consensus 468 ~ 468 (483)
+
T Consensus 184 ~ 184 (395)
T PRK10054 184 R 184 (395)
T ss_pred c
Confidence 3
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-11 Score=109.10 Aligned_cols=339 Identities=12% Similarity=0.086 Sum_probs=200.3
Q ss_pred HHHhh-hcCchhHHH-HHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcc
Q 011565 75 AIRED-LSLSLAEYS-VFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGM 152 (483)
Q Consensus 75 ~i~~~-~~~s~~~~~-~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 152 (483)
.+.+. .|+|..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++.+.+-+..++-|++.
T Consensus 29 yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~ 108 (412)
T PF01770_consen 29 YLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLAT 108 (412)
T ss_pred HHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 34444 788888874 6777888888999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc------cchhHHHHHHhHHHHHHHHHHhhcCCCChhH
Q 011565 153 GIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT------VATWRTLALVGVIPCAVLLLGLFLIPESPRW 226 (483)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 226 (483)
+. ..+-++++-...|+++-.++.+....+..+|-.++..++. ..+.+...++......++++..+++|..++.
T Consensus 109 a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S 187 (412)
T PF01770_consen 109 AA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRS 187 (412)
T ss_pred HH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 64 6777889998899888888888777777777666666655 3456777777776666667777778876543
Q ss_pred HHhhCCHHHHHHHHHHHhcCcccchHHHH--------HHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccc
Q 011565 227 LAKIGKHEEFEAALQKLRGKDADISQEAT--------EIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGG 298 (483)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (483)
..-+++.++... ..+.+.++.+..++.. ..+......-..-...+++..+++....- .+.+.....+
T Consensus 188 ~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~W----SlWWa~atcg 262 (412)
T PF01770_consen 188 LFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLW----SLWWAFATCG 262 (412)
T ss_pred cceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHH----HHHHHHHHhH
Confidence 211111110000 0000000000000000 00000000011123344455556544332 2222233334
Q ss_pred hhhhHHhHHHHHHHc---CCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHH--HHHHHHHHHHHHHHh
Q 011565 299 INAIAFYAANIFQTA---GLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGL--LLGCLLLAAAFFLKT 370 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 370 (483)
+.....|.+.+.+.. .... +..-....+.+.++.+..|++..+..+..-+..+.... +..++++...
T Consensus 263 y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t----- 337 (412)
T PF01770_consen 263 YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT----- 337 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 555666777666654 1112 34444455566667777788744444433333332222 2222222221
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHH
Q 011565 371 YGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWA 431 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 431 (483)
.+.+......++.........++...-++.....+.-+...|++.+...+-..+
T Consensus 338 -------~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 338 -------GNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 344455555555444444444444455555556667788888877766555444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=124.10 Aligned_cols=146 Identities=10% Similarity=-0.017 Sum_probs=120.6
Q ss_pred CcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh--hchhHHHH--HHHHHHHHHHHHHHHhhchhHHHHHH
Q 011565 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF--IGRKGAMR--VSSFVCIAGWLAIYFSEGALSLDLGR 145 (483)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr--~Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r 145 (483)
...+|.+.+++|.+..+.+++.+...++..+++++.|+++|| +++|+... .+.++.+++.+++...++++.+++.+
T Consensus 261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 345566778899999999999999999999999999999997 34444333 34444555566677788999999999
Q ss_pred HHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cc-hhHHHHHHhHHHHHHHHH
Q 011565 146 LATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VA-TWRTLALVGVIPCAVLLL 215 (483)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~-~wr~~f~~~~~~~~~~~~ 215 (483)
++.|++.+...+...+++.|.+|++++++.+++.+....+|..+||.+++ .. +|++.|++.++..++..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888 23 599999998776665443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=112.20 Aligned_cols=174 Identities=17% Similarity=0.087 Sum_probs=150.6
Q ss_pred chHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHH
Q 011565 282 HSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLG 358 (483)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 358 (483)
+...+...+..+..........-.+|.+-++.+.+. ++....++.+..++.++...+.||++||+++.....++.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 344444555555555555566667788888888885 56677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011565 359 CLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNF 438 (483)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 438 (483)
.++..+. .++..+.+.=++.+...+.+++...+.+.++.|+++|+++.++......++.++|.+++.+
T Consensus 92 n~l~alA------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ 159 (394)
T COG2814 92 NLLSALA------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF 159 (394)
T ss_pred HHHHHHh------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence 9998886 6778888888888999899999999999999999999999999999999999999999999
Q ss_pred HHh-hhhhHHHHHHHHHHHHHHHHHHhccc
Q 011565 439 LET-WSSYGTFLLYAAVNILGIVFITTVVP 467 (483)
Q Consensus 439 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
+-| .|+..+|+..+.+.+++.+..+..+|
T Consensus 160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 160 LGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999 88999999999999999988888888
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=121.42 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=106.4
Q ss_pred cCcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhH--HHH------HHHHHHHHHHHHHHHhhchh
Q 011565 69 SSPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKG--AMR------VSSFVCIAGWLAIYFSEGAL 139 (483)
Q Consensus 69 ~~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~--~~~------~~~~~~~~~~~~~~~~~~~~ 139 (483)
.....|. +.+++|.++.+.+++.+...++..++.++.|+++||+|||+ ... .+.++.++........++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (399)
T TIGR00893 234 FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPY 313 (399)
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 3344453 45678999999999999999999999999999999999996 111 11111112122222223444
Q ss_pred HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cch-hHHHHHHhHHHHHHHH
Q 011565 140 SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VAT-WRTLALVGVIPCAVLL 214 (483)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~-wr~~f~~~~~~~~~~~ 214 (483)
..+...++.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+ ..+ |++.|++.++..++..
T Consensus 314 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 392 (399)
T TIGR00893 314 AALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392 (399)
T ss_pred HHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHH
Confidence 44545555555554 78899999999999999999999999999999999988876 446 9999988777776654
Q ss_pred HH
Q 011565 215 LG 216 (483)
Q Consensus 215 ~~ 216 (483)
+.
T Consensus 393 ~~ 394 (399)
T TIGR00893 393 LS 394 (399)
T ss_pred HH
Confidence 44
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=118.13 Aligned_cols=177 Identities=13% Similarity=0.038 Sum_probs=132.0
Q ss_pred chHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHH
Q 011565 282 HSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLG 358 (483)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 358 (483)
|...+..++.+...+.-...+....+.+.++.+.+.. .....+.++..++.+..|++.||+|||+.+..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 3444444555454444445556666666667777754 4455556677889999999999999999998888888888
Q ss_pred HHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011565 359 CLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNF 438 (483)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 438 (483)
..+..+. .+...+...-++.|.+.+...+....++.|.+|+++|+.+.|+.+....+|..+++.+.++
T Consensus 87 ~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 154 (412)
T TIGR02332 87 STATMFA------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY 154 (412)
T ss_pred HHHHHHh------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777654 4455666667777877777778777889999999999999999999999999999999988
Q ss_pred HHh-------hhhhHHHHHHHHHHHHHHHHHHhcccCCC
Q 011565 439 LET-------WSSYGTFLLYAAVNILGIVFITTVVPETK 470 (483)
Q Consensus 439 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (483)
+.+ .++...+.+.++..++..++.+++++|++
T Consensus 155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 764 36667777766666666666666677654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-12 Score=118.05 Aligned_cols=147 Identities=18% Similarity=0.120 Sum_probs=118.2
Q ss_pred chHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhc
Q 011565 72 TQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYG 151 (483)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (483)
.+|.+.++.|.++++.++..+.+.++..+++++.|++.||+|+|+++..+..+.+++.+... + ........++.|++
T Consensus 222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~ 298 (381)
T PRK03633 222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAA 298 (381)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHH
Confidence 35667778899999999999999999999999999999999999999988888777665443 2 23445567888888
Q ss_pred ccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCC
Q 011565 152 MGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIP 221 (483)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (483)
.....|...+.+.|..|+++++...+.......+|..+||.+++ ..+|++.|.+.+...++..+.+++..
T Consensus 299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 372 (381)
T PRK03633 299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRKA 372 (381)
T ss_pred HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhcc
Confidence 77788999999999998888888888877778888888887776 56899999998777776655554443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=119.99 Aligned_cols=155 Identities=15% Similarity=-0.034 Sum_probs=115.5
Q ss_pred CcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh--ch-h-HHHHHH
Q 011565 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE--GA-L-SLDLGR 145 (483)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r 145 (483)
....|.+.+++|.+.....+......+...++.++.|+++||+|||++++.+.++.+++.++.+... +. + ....+-
T Consensus 291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3445778888999888778888888889999999999999999999999999999988888776442 21 1 223334
Q ss_pred HHhhhcccc-cccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----------cchhHHHHHHhHHHHHHHH
Q 011565 146 LATGYGMGI-FSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----------VATWRTLALVGVIPCAVLL 214 (483)
Q Consensus 146 ~l~G~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----------~~~wr~~f~~~~~~~~~~~ 214 (483)
++.+++.+. ..+....++.|.+|+++|++++++......+|..+++.+.. ..+|++.|++.++.+++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence 444444433 33677899999999999999999998888888777643322 4678888888777766654
Q ss_pred HH-hhcCCCCh
Q 011565 215 LG-LFLIPESP 224 (483)
Q Consensus 215 ~~-~~~~~e~p 224 (483)
+. +++.||+.
T Consensus 451 ~~~~~~~~e~~ 461 (479)
T PRK10077 451 LFMWKFVPETK 461 (479)
T ss_pred HHHHhccccCC
Confidence 44 56677763
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.1e-12 Score=118.74 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=121.4
Q ss_pred cchHHHH-hhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q 011565 71 PTQNAIR-EDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATG 149 (483)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (483)
...|.+. +++|.+..+.+++.+.+.++..++.+..|+++||+|||+.+.....+..+...+....++.+.+.+..++.|
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 305 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG 305 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3455444 678999999999999999999999999999999999999999888877777777777788877778888999
Q ss_pred hcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCCC
Q 011565 150 YGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIPE 222 (483)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (483)
++.+..++...++..|..| +++++..+.......+|..++|.+.+ ..||+..+++.++..++..+....+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9888888888878888765 44677777777777888888887766 568999999877777766555544443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-11 Score=115.29 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=117.6
Q ss_pred HhHHHHHHHcCCCCchHHH---HHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccch
Q 011565 304 FYAANIFQTAGLSPSTGTI---SYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPA 380 (483)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (483)
..+|.+.++.+.+...... .+.++..++.+..|++.||+|||+.+..+..+..++.+..... .+.
T Consensus 30 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~~ 97 (390)
T PRK03545 30 GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------WNF 97 (390)
T ss_pred cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------ccH
Confidence 3457777777877655444 4455667888889999999999999999988888887776654 445
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHH
Q 011565 381 LTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGI 459 (483)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 459 (483)
+.+.+..++.+...+...+...+++.|.+|+++|+++.|+......+|..++|.+.+.+.+ .++...+++.+++.++..
T Consensus 98 ~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~ 177 (390)
T PRK03545 98 TVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITL 177 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 5555555566666655667777888999999999999999999999999999999998877 577777777777776665
Q ss_pred HHHHhcccCC
Q 011565 460 VFITTVVPET 469 (483)
Q Consensus 460 ~~~~~~~~~~ 469 (483)
+......|+.
T Consensus 178 ~~~~~~~~~~ 187 (390)
T PRK03545 178 LLLIKLLPLL 187 (390)
T ss_pred HHHHHhCCCC
Confidence 5555555543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-12 Score=123.48 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=121.7
Q ss_pred cCcchHHHHhhhcCchh----HHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 011565 69 SSPTQNAIREDLSLSLA----EYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLG 144 (483)
Q Consensus 69 ~~~~~~~i~~~~~~s~~----~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (483)
..+..+.+.++.+.+.. ..+.+.+++.++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34445555555433332 34666777888889999999999999999999999998888888888888888999999
Q ss_pred HHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHh
Q 011565 145 RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGL 217 (483)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~ 217 (483)
+++.|++.+...+...+++.+..|+++||+.+++......+|..+||.+++ ..||++.|++.++..++..+..
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888888888887776 5689999999888777755543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-11 Score=114.91 Aligned_cols=153 Identities=19% Similarity=0.150 Sum_probs=117.9
Q ss_pred hHHHHHHHcCCCCchH---HHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchH
Q 011565 305 YAANIFQTAGLSPSTG---TISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPAL 381 (483)
Q Consensus 305 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (483)
.++.+.++.+.+.... .....++..++.++.|++.||+|||+.+..+..+.+++.++.... .+.+
T Consensus 42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------~~~~ 109 (394)
T PRK10213 42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------NSFS 109 (394)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------ChHH
Confidence 4566667777776443 345577778899999999999999999999998888877666553 4455
Q ss_pred HHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHH
Q 011565 382 TLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIV 460 (483)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 460 (483)
.++...++.+...+...+...+++.|.+|+++|+.+.++......+|..++|.+.+.+.+ .++...+.+.+++.+++.+
T Consensus 110 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 110 LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 666666777777777778888899999999999999999999999999999999999988 5666677766665555544
Q ss_pred HHHhcccCC
Q 011565 461 FITTVVPET 469 (483)
Q Consensus 461 ~~~~~~~~~ 469 (483)
......||.
T Consensus 190 ~~~~~~p~~ 198 (394)
T PRK10213 190 WIIKSLPSL 198 (394)
T ss_pred HHHHHCCCC
Confidence 444445553
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-12 Score=121.17 Aligned_cols=142 Identities=17% Similarity=0.094 Sum_probs=108.3
Q ss_pred CcchHHHH-hhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHH--HHHHH--hhchhHHHHH
Q 011565 70 SPTQNAIR-EDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGW--LAIYF--SEGALSLDLG 144 (483)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~ 144 (483)
....|.+. +++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+++.
T Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (394)
T TIGR00883 239 TTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL 318 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455444 7789999999999999999999999999999999999998876555444333 22222 2467777788
Q ss_pred HHHhhhcccccccccchhhhcccCccchhhHHhH-HHHHHHHHHHHHHHhhc----cch-hHHHHHHhHHHHH
Q 011565 145 RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSA-NQLLIVIGASTFFIIGT----VAT-WRTLALVGVIPCA 211 (483)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~-~~~~~~iG~~~~~~l~~----~~~-wr~~f~~~~~~~~ 211 (483)
.++.|++.+...+...+++.|.+|+++|+++.++ ...+..+|..++|.+++ ..| |++.++..+..++
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 319 VLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 8999999988999999999999999999998887 45556677777776665 445 8877766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=119.26 Aligned_cols=158 Identities=13% Similarity=-0.014 Sum_probs=120.6
Q ss_pred cccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHh-----h-----
Q 011565 67 GYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS-----E----- 136 (483)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~----- 136 (483)
.......|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++. +
T Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (481)
T TIGR00879 301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS 380 (481)
T ss_pred eehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence 334445677888999999889999999999999999999999999999999999988888877777621 1
Q ss_pred -chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHH
Q 011565 137 -GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCA 211 (483)
Q Consensus 137 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~ 211 (483)
+...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+ ..+|++.|++.+++++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 460 (481)
T TIGR00879 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNV 460 (481)
T ss_pred hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHH
Confidence 22233333333333333345667778899999999999999999999999999888766 4589999998887777
Q ss_pred HHHHH-hhcCCCCh
Q 011565 212 VLLLG-LFLIPESP 224 (483)
Q Consensus 212 ~~~~~-~~~~~e~p 224 (483)
+..+. .++.||++
T Consensus 461 ~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 461 LGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHheecccCC
Confidence 75544 55667653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=117.13 Aligned_cols=154 Identities=18% Similarity=0.076 Sum_probs=127.5
Q ss_pred cchHHHHhh-hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q 011565 71 PTQNAIRED-LSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATG 149 (483)
Q Consensus 71 ~~~~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (483)
...|.+.++ +|.++.+.+++.+.+.++..++.++.+++.||.++|+.+..+.++.+++.++..+.++.+.+.++.++.|
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 345556666 8999999999999999999999999999999988888888888888888888888888888888999999
Q ss_pred hcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHH-HHHHhhcCCCCh
Q 011565 150 YGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAV-LLLGLFLIPESP 224 (483)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p 224 (483)
++.+...+...+++.|..|+++||+++++......+|..+|+.+.+ ..|++..+++.+...++ ..+.+..+||.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 9988777788889999999999999999998888888888877766 55778788775555444 555566677654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=114.41 Aligned_cols=155 Identities=20% Similarity=0.082 Sum_probs=117.5
Q ss_pred HhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccch
Q 011565 304 FYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPA 380 (483)
Q Consensus 304 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (483)
...|.+.++.+.+.. .......++..++.++.|++.||+|||+.+..+..+..++.+..... .+.
T Consensus 26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------------~~~ 93 (385)
T TIGR00710 26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS------------NNI 93 (385)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------------ccH
Confidence 345666666677654 44455567788999999999999999999998888877777766553 344
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHH
Q 011565 381 LTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGI 459 (483)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 459 (483)
..+....++.+.+.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+++.++..
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLS 173 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 4555555666666666667778899999999999999999999999999999999998887 566666777676666666
Q ss_pred HHHHhcccCCC
Q 011565 460 VFITTVVPETK 470 (483)
Q Consensus 460 ~~~~~~~~~~~ 470 (483)
+..++..||++
T Consensus 174 ~~~~~~~~~~~ 184 (385)
T TIGR00710 174 ALIFFILPETL 184 (385)
T ss_pred HHHHHhCCCCC
Confidence 66555566544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=117.81 Aligned_cols=149 Identities=12% Similarity=0.157 Sum_probs=109.9
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH---h-hchhHHHHHHHHhhh
Q 011565 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF---S-EGALSLDLGRLATGY 150 (483)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~ 150 (483)
.+.+++|.+..+...+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456778888887766666777778889999999999999999998887766555443322 2 234444556677788
Q ss_pred cccccccccchhhhcccCccchhhHHhHH-HHHHHHHHHHHHHhhcc------chhHHHHHHhHHHHHHHHHHhhcCCCC
Q 011565 151 GMGIFSYVVPVFTAEIAPKELRGALTSAN-QLLIVIGASTFFIIGTV------ATWRTLALVGVIPCAVLLLGLFLIPES 223 (483)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~-~~~~~iG~~~~~~l~~~------~~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (483)
+.+...+...+++.|.+|.+.|+...++. ..+..+|..++|.+.+. .+|+..+...++.+++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88888888889999999999998888774 44455777777766652 248888888777777766666666764
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-11 Score=113.14 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=125.9
Q ss_pred CcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHH
Q 011565 280 YLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLL 356 (483)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 356 (483)
..|+.....++..+.............+.+.++.+.+.. .......++..++.++.|++.||+|||+.+..+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS 88 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555555555555556666677777777777754 44455567788999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 011565 357 LGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTF 436 (483)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 436 (483)
++.++.... .+...+....++.+.+.+...+...+++.|..|+++|+.+.++.+....+|..+++.+.
T Consensus 89 ~~~~~~~~~------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 156 (405)
T TIGR00891 89 AGTLACGFA------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVY 156 (405)
T ss_pred HHHHHHHHh------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777666553 34555566666777777777777888999999999999999999999999999999999
Q ss_pred HHHHh-hh--hhHHHHHHHHHHHHHHHHHHhcccCC
Q 011565 437 NFLET-WS--SYGTFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 437 g~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
+.+.+ .+ +...+.+. ++..+..++.....||+
T Consensus 157 ~~l~~~~~~~w~~~f~~~-~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 157 SLVVPVWGDGWRALFFIS-ILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHhcCccHHHHHHHH-HHHHHHHHHHHHhCCCC
Confidence 88876 33 34444443 33333333334445554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=116.79 Aligned_cols=159 Identities=22% Similarity=0.190 Sum_probs=118.3
Q ss_pred hhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 299 INAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
......+.|.+.+..+.+.. .......++.+++.++.|+++||+|||+.+..+..+..++.+++...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 102 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA---------- 102 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc----------
Confidence 34455667777777777654 34445566778999999999999999999988887777776665543
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAV 454 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~ 454 (483)
.+...+....++.+.+.+...+...+++.|.+|++.|+++.++.+....+|..+++.+.+++.+ .++...+.+.+++
T Consensus 103 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~ 180 (398)
T TIGR00895 103 --TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIA 180 (398)
T ss_pred --cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhH
Confidence 3344555556666776677778888999999999999999999999999999999999998887 5555556665555
Q ss_pred HHHHHHHHHhcccCC
Q 011565 455 NILGIVFITTVVPET 469 (483)
Q Consensus 455 ~~~~~~~~~~~~~~~ 469 (483)
..+..++.....+++
T Consensus 181 ~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 181 PLLLLLLLMRFLPES 195 (398)
T ss_pred HHHHHHHHHHhCCCC
Confidence 555555555555554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-11 Score=115.00 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=110.4
Q ss_pred HHHHcCCCCchHHHHH---HHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHH
Q 011565 309 IFQTAGLSPSTGTISY---ALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAG 385 (483)
Q Consensus 309 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (483)
+.+..|.+........ .+...+..++.|+++||+|||+.+..+.....++++.+... ++.+.+..
T Consensus 37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~ 104 (400)
T PRK11646 37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA------------HEPWLLWL 104 (400)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh------------ccHHHHHH
Confidence 3345577765544444 45556668899999999999999999988888887776553 33444555
Q ss_pred HHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Q 011565 386 VLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTV 465 (483)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (483)
..++.+...+...+...+++.+..|+++|+++.|+.+....+|..++|.+.+++.+.++...+++.+...++..++..+.
T Consensus 105 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 105 SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666555567777888999999999999999999999999999999999987666677777666666555554455
Q ss_pred ccC
Q 011565 466 VPE 468 (483)
Q Consensus 466 ~~~ 468 (483)
.++
T Consensus 185 ~~~ 187 (400)
T PRK11646 185 LPA 187 (400)
T ss_pred CCc
Confidence 554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-11 Score=114.63 Aligned_cols=157 Identities=12% Similarity=0.067 Sum_probs=116.6
Q ss_pred hhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc
Q 011565 300 NAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376 (483)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (483)
.....+.+.+.++.|.+.. .......++..++.++.|++.||+|||+.+..+.++..++.++....
T Consensus 40 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 108 (434)
T PRK11663 40 KSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS----------- 108 (434)
T ss_pred hhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----------
Confidence 3455667777777787753 44455677888999999999999999999988888888777766553
Q ss_pred ccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH
Q 011565 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVN 455 (483)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 455 (483)
.+.+.+....++.+...+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+++.+ .++...+.+.+++.
T Consensus 109 -~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~ 187 (434)
T PRK11663 109 -SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIA 187 (434)
T ss_pred -hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344444444455665655667778899999999999999999999999999999999999887 56666666666655
Q ss_pred HHHHHHHHhcccC
Q 011565 456 ILGIVFITTVVPE 468 (483)
Q Consensus 456 ~~~~~~~~~~~~~ 468 (483)
++..++..+.++|
T Consensus 188 ~~~~~~~~~~~~~ 200 (434)
T PRK11663 188 IVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHcCC
Confidence 5554444444443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=118.41 Aligned_cols=149 Identities=12% Similarity=0.074 Sum_probs=108.6
Q ss_pred CcchH-HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHH--HHHhhchhHHHHHHH
Q 011565 70 SPTQN-AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLA--IYFSEGALSLDLGRL 146 (483)
Q Consensus 70 ~~~~~-~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~ 146 (483)
....| .+.+++|.+..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+ ....++.+.+.+.++
T Consensus 278 ~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (467)
T PRK09556 278 DNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF 357 (467)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455 456779999999999999999999999999999999999998877655444443322 233456666778888
Q ss_pred HhhhcccccccccchhhhcccCccchhhHHhHHHHHHHH-HHHHHHHhhc----------------cchhHHHHHHhHHH
Q 011565 147 ATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVI-GASTFFIIGT----------------VATWRTLALVGVIP 209 (483)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~i-G~~~~~~l~~----------------~~~wr~~f~~~~~~ 209 (483)
+.|++.............|.+|+++||.+.|+.+....+ |..++|.+.+ ..+|+..|++.++.
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 888654333333345677999999999999999877775 6566655543 24699999887777
Q ss_pred HHHHHHHhh
Q 011565 210 CAVLLLGLF 218 (483)
Q Consensus 210 ~~~~~~~~~ 218 (483)
.++..+..+
T Consensus 438 ~~~~~~~~~ 446 (467)
T PRK09556 438 AIGCICLMA 446 (467)
T ss_pred HHHHHHHHH
Confidence 766555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.5e-11 Score=113.16 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=116.2
Q ss_pred cchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHhh
Q 011565 71 PTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE-GALSLDLGRLATG 149 (483)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G 149 (483)
...|.+.+++|.+..+.++..+.+.++..++.+..|++.||+|||+.+..+..+..++.++....+ +...+ .-++.|
T Consensus 226 ~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g 303 (393)
T PRK09705 226 AWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCG 303 (393)
T ss_pred HHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHH
Confidence 345556667899999999999999999999999999999999999999998888777766554333 22222 234668
Q ss_pred hcccccccccchhhhcccC-ccchhhHHhHHHHHHHHHHHHHHHhhc----cc-hhHHHHHHhHHHHHHHHHH-hhcCCC
Q 011565 150 YGMGIFSYVVPVFTAEIAP-KELRGALTSANQLLIVIGASTFFIIGT----VA-TWRTLALVGVIPCAVLLLG-LFLIPE 222 (483)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~-~wr~~f~~~~~~~~~~~~~-~~~~~e 222 (483)
++.+...+.......+..+ +++|++..++.+....++..++|.+.+ .. +|+..|++.++.+++..+. ..+.||
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888877777777774 578899999988888888888887766 33 4788888877766664444 667777
Q ss_pred Ch
Q 011565 223 SP 224 (483)
Q Consensus 223 ~p 224 (483)
++
T Consensus 384 ~~ 385 (393)
T PRK09705 384 RF 385 (393)
T ss_pred cc
Confidence 64
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=114.29 Aligned_cols=147 Identities=15% Similarity=0.082 Sum_probs=112.5
Q ss_pred cchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHH-HHHHHHHHHHHHHHH-----hhchhHHHHH
Q 011565 71 PTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMR-VSSFVCIAGWLAIYF-----SEGALSLDLG 144 (483)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~ 144 (483)
...|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++.+.+.+.
T Consensus 243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (402)
T TIGR00897 243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII 322 (402)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence 3566677889999999999999999999999999999999999988764 333444444333332 2356677788
Q ss_pred HHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhc
Q 011565 145 RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFL 219 (483)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~ 219 (483)
.++.|++.+...+. ...+.|.. +++|+++.++.+....+|..++|.+.+ ..||+..+++.++..++..+...+
T Consensus 323 ~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 323 AIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 88999888766543 45667765 568999999999999999998888776 568999999988777775555444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-09 Score=98.72 Aligned_cols=312 Identities=15% Similarity=0.079 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCcc
Q 011565 91 GSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKE 170 (483)
Q Consensus 91 ~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 170 (483)
.++-...+.+++++.+.+.|+.|.|..++++...+....+..-+ +|-+.++++-.+.|+|.+..+...-.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77788889999999999999999999999999999887777665 56777889999999999999999999999999999
Q ss_pred chhhHHhHHHHHHHHHHHHHHHhhccc------------hhH-H----------HHHHhHHH---HHHHHHHhhcCCCCh
Q 011565 171 LRGALTSANQLLIVIGASTFFIIGTVA------------TWR-T----------LALVGVIP---CAVLLLGLFLIPESP 224 (483)
Q Consensus 171 ~rg~~~~~~~~~~~iG~~~~~~l~~~~------------~wr-~----------~f~~~~~~---~~~~~~~~~~~~e~p 224 (483)
++.+..++.......+.++|..+.... +-+ . ...+.+++ .++.++...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999998888888888886554311 111 1 11111111 111222233333221
Q ss_pred hHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhh---HHhhhcCCcchHHHHHHhhhhhhccchhh
Q 011565 225 RWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARL---LDLFQKRYLHSVTIGVGLMVIQQFGGINA 301 (483)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (483)
. . .+.+ ..+......+ .+++++++...+....+..++. ...+
T Consensus 215 ~-~------~~~~-------------------------~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~---~Sf~ 259 (461)
T KOG3098|consen 215 V-V------NCKS-------------------------SSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLE---TSFW 259 (461)
T ss_pred h-h------hhhh-------------------------hccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH---HHHH
Confidence 0 0 0000 0000111122 2333444433333333322222 2223
Q ss_pred hHHhHHHHHH--HcCCCC----chHHHHHHHHHHHHHHHHHHHHhh---cCCccchhhHhHHHHHHHHHHHHHHHHHhcC
Q 011565 302 IAFYAANIFQ--TAGLSP----STGTISYALLQVVVTFFNIIMIDR---AGRKPLLLFAATGLLLGCLLLAAAFFLKTYG 372 (483)
Q Consensus 302 ~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (483)
...|...+.- ..+.+. +......+++.+++....+.+.+| +|+++++.++..+..+++++.........+-
T Consensus 260 ~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~ 339 (461)
T KOG3098|consen 260 ISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPL 339 (461)
T ss_pred HhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCC
Confidence 3333222221 223332 334455566777777777777765 5778888777777766666655443222110
Q ss_pred Cc------ccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 373 LA------LESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 373 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
.+ ...+......+...+.|..-..+....+.++...+ ++.|..+.++..+-..++..++-...+..
T Consensus 340 ~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 340 RPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred CCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 00 00112334555556666666677777788888888 47888888888888888887766555443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=122.37 Aligned_cols=139 Identities=16% Similarity=0.088 Sum_probs=107.2
Q ss_pred cchHHHH-hhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHh--hchhHHHHHHHH
Q 011565 71 PTQNAIR-EDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS--EGALSLDLGRLA 147 (483)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l 147 (483)
..+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.+..... .+.+.+.+..++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4566565 5899999999999999999999999999999999999999988877766665544433 334444455555
Q ss_pred hhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHH
Q 011565 148 TGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIP 209 (483)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~ 209 (483)
.++...+..+...+++.|.+|+++|++.+++......+|..+||.+++ ..||+..+.+.+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 544444455677788999999999999999988888888888887766 56888887664443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-11 Score=108.26 Aligned_cols=175 Identities=11% Similarity=0.092 Sum_probs=139.4
Q ss_pred hHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHH
Q 011565 283 SVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGC 359 (483)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 359 (483)
..++..++.+..++..=-.+..-.|.+.++.+++.. .....+.+..-++-++.|.++||.+.|..+..++++.++..
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n 108 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence 444455554444444444455556677777677754 45555667777999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHH--H
Q 011565 360 LLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTF--N 437 (483)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--g 437 (483)
+++.+. .+...+.+...+-+.+.+...|.+...+..-+|+++||+..++-|+..++|+.+.|++. +
T Consensus 109 il~Gfs------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la 176 (448)
T COG2271 109 ILFGFS------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA 176 (448)
T ss_pred HHHhhh------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence 999886 45666777777888888888899989999999999999999999999999999999998 7
Q ss_pred HHHh-hhhhHHHHHHHHHHHHHHHHHHhcccCC
Q 011565 438 FLET-WSSYGTFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 438 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
++.+ .+....|++-++++++.+++.++..+++
T Consensus 177 ~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 177 FFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7776 4667778888888888888888877654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=110.98 Aligned_cols=141 Identities=9% Similarity=-0.037 Sum_probs=114.3
Q ss_pred chHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhc
Q 011565 72 TQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYG 151 (483)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (483)
..|.+.+|.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+++++.+.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33445578999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred ccccccccchhhhcccCccchhhHHhHHH-HHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHH
Q 011565 152 MGIFSYVVPVFTAEIAPKELRGALTSANQ-LLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLL 214 (483)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~ 214 (483)
.+...+....++.+. +++++++..+... ....+|..+|+.+++ ..++ ..|+..+++.++.+
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 998888888888887 5666788888775 545566666666665 4566 45555555555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-11 Score=111.61 Aligned_cols=138 Identities=12% Similarity=0.001 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhccc
Q 011565 318 STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGM 397 (483)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (483)
+.......++..++.++.|+++||+|||+.+..+..+..++..+....... ...+.+.+.....+.+.+.+..
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL-------GGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHHHHHH
Confidence 445555677788899999999999999999998887777766665554211 0124555566666667777777
Q ss_pred ccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHH
Q 011565 398 GATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 462 (483)
.+...+++.|..|+++|+++.|+.+....+|..++|.+.+.+.+ .++...+.+.++..++..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999887 555555655555544444333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-11 Score=118.18 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=123.2
Q ss_pred hhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 299 INAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
........|.+.++.+.+. +.....+.++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 18 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 87 (485)
T TIGR00711 18 STIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA---------- 87 (485)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc----------
Confidence 3445566777777777664 456667788889999999999999999999999888888877766543
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAV 454 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~ 454 (483)
.+...+....++.+.+.+...+...+++.|.+|+++|+.+.++......+|..++|.+.+++.+ .++...+++.+.+
T Consensus 88 --~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~ 165 (485)
T TIGR00711 88 --PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPI 165 (485)
T ss_pred --CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHH
Confidence 3455666666777777777778888999999999999999999999999999999999999887 5666666666666
Q ss_pred HHHHHHHHHhcccCC
Q 011565 455 NILGIVFITTVVPET 469 (483)
Q Consensus 455 ~~~~~~~~~~~~~~~ 469 (483)
.++..++..+..++.
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 166 GIIVVVVAFFILPRD 180 (485)
T ss_pred HHHHHHHHHHHcCCc
Confidence 555555555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=109.63 Aligned_cols=158 Identities=20% Similarity=0.090 Sum_probs=119.3
Q ss_pred hhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccc
Q 011565 301 AIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALES 377 (483)
Q Consensus 301 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (483)
.....+|.+.++.|.+. +.......++..++.++.|++.||+|||+.+..+..+.+++.++....
T Consensus 21 ~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~------------ 88 (382)
T PRK10091 21 GIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS------------ 88 (382)
T ss_pred HHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh------------
Confidence 34445566666667764 455566788888999999999999999999999988888887776654
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Q 011565 378 VPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNI 456 (483)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 456 (483)
.+.+.+.....+.+.+.+...+.......|..|+++|+.+.++......+|..++|.+.+++.+ .++...+.+.+.+.+
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~ 168 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNI 168 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHH
Confidence 4455566666666666665556666778899999899999999999999999999999998877 566677777776666
Q ss_pred HHHHHHHhcccCCC
Q 011565 457 LGIVFITTVVPETK 470 (483)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (483)
+..+..+...||.+
T Consensus 169 ~~~~~~~~~lp~~~ 182 (382)
T PRK10091 169 AVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHhCCCCC
Confidence 65555555566643
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=110.92 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=115.9
Q ss_pred hhhHHhHHHHHHHcCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc
Q 011565 300 NAIAFYAANIFQTAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376 (483)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (483)
......+|.+.++.+.+... ......++..++.++.|+++||+|||+.+..+.....++..++...
T Consensus 20 ~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----------- 88 (392)
T PRK10473 20 DMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----------- 88 (392)
T ss_pred HHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----------
Confidence 34445667777777777543 3444566777889999999999999999988888777777666543
Q ss_pred ccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH
Q 011565 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVN 455 (483)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 455 (483)
.+...+....++.+.+.+...+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+ .++...+.+.+++.
T Consensus 89 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~ 167 (392)
T PRK10473 89 -ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMG 167 (392)
T ss_pred -CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 2333444444555555555566677889999999999999999999999999999999888776 55566677777666
Q ss_pred HHHHHHHHhcccCCC
Q 011565 456 ILGIVFITTVVPETK 470 (483)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (483)
++..++.....+|++
T Consensus 168 ~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 168 ILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666555566543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-10 Score=110.60 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=112.5
Q ss_pred HHHHhhhcCchhHHHHHHH-HHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHH---HHh-hchhHHHHHHHHh
Q 011565 74 NAIREDLSLSLAEYSVFGS-ILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAI---YFS-EGALSLDLGRLAT 148 (483)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s-~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~ 148 (483)
|.+.+++|.+.++.+++.. ...++..++.++.|+++||+|+|+.+.++.++.++..+.. +.. ++.+.+.+.-+++
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~ 326 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE 326 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3456779999999999985 6668999999999999999999998877666555544332 333 3555555556665
Q ss_pred hhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcCCCC
Q 011565 149 GYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLIPES 223 (483)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (483)
.++.|...+...++..+..+++.++...++.+....+|..+++.+.+ ..||+..|.+.++.+++.++...+++++
T Consensus 327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555666788889999888999999998888888777665555 5689999999888888876665555543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=114.41 Aligned_cols=173 Identities=17% Similarity=0.051 Sum_probs=126.0
Q ss_pred HHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHH
Q 011565 285 TIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLL 361 (483)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 361 (483)
+....+..+....-.+....-+|.+.++.+.+. ++....+.++...+.+..|+++||+|||+.+..+..+..++.++
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 333344444444344456666777777777654 34555567777788899999999999999999999988888877
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccC-CCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 362 LAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIF-PINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
.... .+...++..-.+.+.+.+...+.....+.+.+ |+++|+++.|+......+|..++|.+.+++.
T Consensus 88 ~~~a------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 88 AAFS------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7664 45555666666677766666666555555554 6789999999999999999999999999998
Q ss_pred h-hhhhHHHHHHHHHHHHHHHHHHhcccCC
Q 011565 441 T-WSSYGTFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 441 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
+ .++.+.|++...+.++..++..+..|+.
T Consensus 156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 156 EHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8 5667777777666666666666666654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=105.88 Aligned_cols=173 Identities=10% Similarity=0.075 Sum_probs=121.3
Q ss_pred HhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhh
Q 011565 274 DLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLF 350 (483)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 350 (483)
.++.++.....++...++.+.... +.+++--.+++.+... +.....--.+.++.-+..+++.+|+|+-+++..
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~l----v~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~l 441 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGL----VFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYL 441 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHH----HHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeee
Confidence 445566555544444444443322 2333333344444333 334444455677888889999999999999998
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHH-HHHHH
Q 011565 351 AATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLV-NWFGA 429 (483)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~ 429 (483)
++.+..+=++.+... .++|.+..+-++-+......+....+|++...||+.+.++.++.... ..+|-
T Consensus 442 gLa~~~~Rf~~~S~L------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~ 509 (618)
T KOG3762|consen 442 GLACNVGRFLYYSYL------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGK 509 (618)
T ss_pred hhhHHHHHHHHHHHh------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCc
Confidence 888877777776665 55666666667777777777777789999999999999999999776 47899
Q ss_pred HHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHH
Q 011565 430 WAISYTFNFLET-WSSYGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 430 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 462 (483)
.+|.+++|.+.+ .+...+|.++++.+++..++.
T Consensus 510 g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 510 GLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred chhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 999999999888 676777777777776665544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.3e-11 Score=110.89 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=115.7
Q ss_pred hHHhHH-HHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccc
Q 011565 302 IAFYAA-NIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALES 377 (483)
Q Consensus 302 ~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (483)
.....+ .+.++.+.+. +.......+...++.+..|+++||+|||+.+..+..+.+++.++..+.
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------------ 82 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA------------ 82 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh------------
Confidence 333444 4444556555 344555677888999999999999999999998888888884444432
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Q 011565 378 VPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNI 456 (483)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 456 (483)
.+.+.+....++.+.+.+...+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+ .++...+++.+++.+
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 2334666677777777777788889999999999999999999999999999999999999886 566677777777777
Q ss_pred HHHHHHHhccc
Q 011565 457 LGIVFITTVVP 467 (483)
Q Consensus 457 ~~~~~~~~~~~ 467 (483)
+..++...+.+
T Consensus 163 ~~~il~~~~~~ 173 (352)
T PF07690_consen 163 IAAILFILFLP 173 (352)
T ss_dssp HHHHHHHCCC-
T ss_pred hhhhhHhhhhh
Confidence 77664334443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-11 Score=114.91 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=98.4
Q ss_pred CcchHHHH-hhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh--chhHHH-HHHHHHHHHHHHHHHH--hhchhHHHH
Q 011565 70 SPTQNAIR-EDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI--GRKGAM-RVSSFVCIAGWLAIYF--SEGALSLDL 143 (483)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~~-~~~~~~~~~~~~~~~~--~~~~~~l~~ 143 (483)
...+|.+. ++.|.+..+.++....+.++..++.++.|+++||+ |||+.. +....+..++.+...+ ..+.+...+
T Consensus 273 ~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 352 (452)
T PRK11273 273 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMA 352 (452)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 34555444 45789999999999999999999999999999999 555433 2223333333333322 234444455
Q ss_pred HHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHH-HHHHhhc----cchhHHHHHHhHHHHHHHHHH
Q 011565 144 GRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGAS-TFFIIGT----VATWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~-~~~~l~~----~~~wr~~f~~~~~~~~~~~~~ 216 (483)
..++.|.+..........+..|.+|+++||+++++.+....+|.. ++|.+.+ ..||+..|++.+..+++.++.
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 430 (452)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 555555543322233345677999999999999999877666654 3565554 568999999877777765544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=111.95 Aligned_cols=124 Identities=20% Similarity=0.148 Sum_probs=93.3
Q ss_pred chHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhh-
Q 011565 72 TQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGY- 150 (483)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~- 150 (483)
.+|.+.++.|.++.+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++.++..+.....++.....+.-++.|+
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (426)
T PRK12307 253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLM 332 (426)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 4566677789999999999999999999999999999999999999998888776665555443322222222233333
Q ss_pred -cccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 151 -GMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 151 -~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
+..+..+....++.|.+|+++||+++++......+|..++|.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g 378 (426)
T PRK12307 333 ATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAAT 378 (426)
T ss_pred HhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHH
Confidence 222334456678899999999999999988888888888888776
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-10 Score=109.02 Aligned_cols=175 Identities=17% Similarity=0.147 Sum_probs=119.4
Q ss_pred HHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHH
Q 011565 284 VTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCL 360 (483)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 360 (483)
..+...+..+........+...++.+.++.+.+... ....+.++..++.++.|+++||+|||+.+..+.....++..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 93 (406)
T PRK15402 14 FPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCL 93 (406)
T ss_pred HHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 333334444333333333333445566666776543 34555677788899999999999999999888877777766
Q ss_pred HHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 361 LLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
..... .+...+.....+.+...+...+...+.+.|.+|++.|....++......++..++|.+.+.+.
T Consensus 94 ~~~~~------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 94 AILLA------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHH------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 234444455555555555555667788889999999999999998888899999999999887
Q ss_pred h-hhhhHHHHHHHHHHHHHHHHHHhcccCCC
Q 011565 441 T-WSSYGTFLLYAAVNILGIVFITTVVPETK 470 (483)
Q Consensus 441 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (483)
+ .++...+++.+++.++..+..+...||++
T Consensus 162 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 162 HVLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7 56666777666666666555555566554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=109.25 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=111.4
Q ss_pred HHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHH
Q 011565 307 ANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTL 383 (483)
Q Consensus 307 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (483)
|.+.++.+.+.. .....+.++..++.+..|+++||+|||+.+..+..+..++.++.... .+...+
T Consensus 40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------~~~~~l 107 (413)
T PRK15403 40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------------TSMTQF 107 (413)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------------CCHHHH
Confidence 344455566543 34455567778899999999999999999998888777776666553 344455
Q ss_pred HHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHH
Q 011565 384 AGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 462 (483)
...-++.+.+.+...+....+..|.+|+++++++.++.+....+|..++|.+++.+.+ .++...|.+.++..++..+..
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544345556778899999999999999999999999999999998887 466777777777666665555
Q ss_pred HhcccCCC
Q 011565 463 TTVVPETK 470 (483)
Q Consensus 463 ~~~~~~~~ 470 (483)
++..||++
T Consensus 188 ~~~lp~~~ 195 (413)
T PRK15403 188 LLAMPETV 195 (413)
T ss_pred HHhCCCCc
Confidence 55567653
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-10 Score=111.06 Aligned_cols=158 Identities=21% Similarity=0.150 Sum_probs=116.6
Q ss_pred hhhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 299 INAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
......+.|.+.++.|.+.. .....+.++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 95 (471)
T PRK10504 26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS---------- 95 (471)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh----------
Confidence 33445567777777787754 34455566777899999999999999999888877777666554432
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAV 454 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~ 454 (483)
.+...+....++.+.+.+...+...+++.|.+|+++|+++.|+.+....+|..++|.+.|.+.+ .++...|.+....
T Consensus 96 --~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~ 173 (471)
T PRK10504 96 --GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPV 173 (471)
T ss_pred --CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHH
Confidence 3344555566677777777777788888999999999999999999999999999999999988 5556666666655
Q ss_pred HHHHHHHHHhcccC
Q 011565 455 NILGIVFITTVVPE 468 (483)
Q Consensus 455 ~~~~~~~~~~~~~~ 468 (483)
..+..+......++
T Consensus 174 ~~l~~~~~~~~~~~ 187 (471)
T PRK10504 174 GIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHhCCC
Confidence 55555555444443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-11 Score=112.13 Aligned_cols=185 Identities=10% Similarity=0.019 Sum_probs=146.4
Q ss_pred chHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHH
Q 011565 282 HSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLS---PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLG 358 (483)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 358 (483)
+.......+....+..--+.++.-.+.+.+..+.+ .++....+.+...+.++++|++.||++|++++.+|..+-.++
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A 111 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA 111 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence 34445555555555555555665555555555554 467788888999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011565 359 CLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNF 438 (483)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 438 (483)
.+...+. ...+.+.+.-.+.|.+...+.|+..++++|.+|..+|+++.++.++...+|..+|-.+...
T Consensus 112 v~~~~fs------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~ 179 (493)
T KOG1330|consen 112 VFASGFS------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV 179 (493)
T ss_pred HHHHHHH------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence 8887775 4567777788888999999999999999999999999999999999999999999888887
Q ss_pred HHh--hhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Q 011565 439 LET--WSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQ 478 (483)
Q Consensus 439 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (483)
+.+ ..+.+.+...+++.++++++..++.+|.+++..++.+
T Consensus 180 va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~ 221 (493)
T KOG1330|consen 180 VASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD 221 (493)
T ss_pred eccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence 777 2356677788888888888888888877655444433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-10 Score=106.13 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=113.6
Q ss_pred chHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh---chh------HHH
Q 011565 72 TQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE---GAL------SLD 142 (483)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~------~l~ 142 (483)
....+-++-|++..+..+..........+..+++.++.||+|||+.++.+..++.+..+++.... +.. ..+
T Consensus 292 Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i 371 (485)
T KOG0569|consen 292 YSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCI 371 (485)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34468888899999999999999999999999999999999999999999999998888876542 111 123
Q ss_pred HHHHHhhhcccc-cccccchhhhcccCccchhhHHhHHHHHHHHHHHHHH----HhhccchhHHHHHHhHHHHHH-HHHH
Q 011565 143 LGRLATGYGMGI-FSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFF----IIGTVATWRTLALVGVIPCAV-LLLG 216 (483)
Q Consensus 143 ~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~----~l~~~~~wr~~f~~~~~~~~~-~~~~ 216 (483)
++.++..++.+. .-|...-+.+|.+|++.|..++++.....-+...+-. .+...+|- +.|++..+++++ .+..
T Consensus 372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~ 450 (485)
T KOG0569|consen 372 AAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYL 450 (485)
T ss_pred HHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHH
Confidence 444444333332 3677888999999999999999888777666655433 33334444 667777777666 4555
Q ss_pred hhcCCCCh
Q 011565 217 LFLIPESP 224 (483)
Q Consensus 217 ~~~~~e~p 224 (483)
++.+||+.
T Consensus 451 ~~~lPETk 458 (485)
T KOG0569|consen 451 YRYLPETK 458 (485)
T ss_pred HHhCcccC
Confidence 89999984
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-10 Score=107.27 Aligned_cols=154 Identities=17% Similarity=0.170 Sum_probs=109.5
Q ss_pred hHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchH
Q 011565 305 YAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPAL 381 (483)
Q Consensus 305 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (483)
..|.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+.....++.+..... .+..
T Consensus 30 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------~~~~ 97 (394)
T PRK11652 30 AIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA------------HSLT 97 (394)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------------ccHH
Confidence 34556666677754 34455566778899999999999999999988887777766655442 3344
Q ss_pred HHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHH
Q 011565 382 TLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIV 460 (483)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 460 (483)
.+.....+.+.+.+...+....+..|.+++++++.+.+..+....++..++|.+.+.+.+ .++...+.+.++..++..+
T Consensus 98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 444555555555444445556677888888899999999999999999999999998887 5666666666665555555
Q ss_pred HHHhcccCCC
Q 011565 461 FITTVVPETK 470 (483)
Q Consensus 461 ~~~~~~~~~~ 470 (483)
...+..||++
T Consensus 178 ~~~~~~~~~~ 187 (394)
T PRK11652 178 SMARWMPETR 187 (394)
T ss_pred HHHHhCCccC
Confidence 4455566643
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=112.92 Aligned_cols=153 Identities=17% Similarity=0.035 Sum_probs=102.4
Q ss_pred chHHHHhhhcCchhHHHH------------HHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhc--
Q 011565 72 TQNAIREDLSLSLAEYSV------------FGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEG-- 137 (483)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~------------~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-- 137 (483)
..|.+.++.|.+..+.+. ......++..++.++.++++||+|||++++++..+.+++.++.++..+
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356677788876542211 233444566678899999999999999999888887777666654321
Q ss_pred --hhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc---c-----------chhHH
Q 011565 138 --ALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT---V-----------ATWRT 201 (483)
Q Consensus 138 --~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~---~-----------~~wr~ 201 (483)
...+...-+...++..+..+....+..|.+|.+.|+++.++.+....+|.++++.+.+ . .++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 1111111111122222345566778899999999999999999999999988887654 1 23456
Q ss_pred HHHHhHHHHHHHHHHhhcCCCCh
Q 011565 202 LALVGVIPCAVLLLGLFLIPESP 224 (483)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~~~e~p 224 (483)
.|++.++.+++..+..+++||+.
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCC
Confidence 77777777666555667789874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=111.34 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=110.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccc
Q 011565 81 SLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVP 160 (483)
Q Consensus 81 ~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 160 (483)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.+++..+...+++.+.+++.++++|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789999999999999999999999999999999999999999888888889999999999999999876666666
Q ss_pred hhhhcccCccchhhHHhH-HHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHH
Q 011565 161 VFTAEIAPKELRGALTSA-NQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLL 215 (483)
Q Consensus 161 ~~i~~~~~~~~rg~~~~~-~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~ 215 (483)
.+..+..+++.++...+. .+....+|..+++.+++ ..||+..|.+.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 777777777777765554 55667777777776655 56899999997777666443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=110.54 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=115.7
Q ss_pred hhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccc
Q 011565 301 AIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALES 377 (483)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (483)
.+....+.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+..+..++.+++...
T Consensus 13 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 80 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS------------ 80 (379)
T ss_pred hhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh------------
Confidence 344445555555576654 45556677888999999999999999999999988888887777664
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHH-HHHHHHh-hhhhHHHHHHHHHH
Q 011565 378 VPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISY-TFNFLET-WSSYGTFLLYAAVN 455 (483)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~-~~g~~~~-~~~~~~~~~~~~~~ 455 (483)
.+.+.+.+..++.+.+.+...+...+++.|.+|+++|+.+.++.+....+|..++|. +.+.+.+ .++...+.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA 160 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 345556666666777777777888899999999999999999999999999999994 5555555 45555666666666
Q ss_pred HHHHHHHHhcccC
Q 011565 456 ILGIVFITTVVPE 468 (483)
Q Consensus 456 ~~~~~~~~~~~~~ 468 (483)
++..++.++..++
T Consensus 161 ~~~~~~~~~~~~~ 173 (379)
T TIGR00881 161 IIVSLICFLLLRD 173 (379)
T ss_pred HHHHHHHheeeCC
Confidence 6555555555554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=112.23 Aligned_cols=147 Identities=18% Similarity=0.134 Sum_probs=106.8
Q ss_pred hhhHHhHHHHHHH---cCCCC---chHHHHHHHHHHHHHHHHHHHHhh-cCCccchhhHhHHHHHHHHHHHHHHHHHhcC
Q 011565 300 NAIAFYAANIFQT---AGLSP---STGTISYALLQVVVTFFNIIMIDR-AGRKPLLLFAATGLLLGCLLLAAAFFLKTYG 372 (483)
Q Consensus 300 ~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (483)
+....+++.+++. .|.+. +.....+.+...++.+++|+++|| +|||+++..+..+..++.+++...
T Consensus 27 ~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~------- 99 (475)
T TIGR00924 27 YGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS------- 99 (475)
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3334444444443 45554 445556677888999999999999 899999999999888888777653
Q ss_pred CcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCcc---chhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHH
Q 011565 373 LALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINI---KGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTF 448 (483)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~ 448 (483)
.+...+.....+.+.+.+...+...++..+.+|+++ |+.+.++.+...++|..++|.+.+++.+ .++...|
T Consensus 100 -----~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f 174 (475)
T TIGR00924 100 -----IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGF 174 (475)
T ss_pred -----ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 223334444555666666667777888889888654 8889999999999999999999999988 4666666
Q ss_pred HHHHHHHHHH
Q 011565 449 LLYAAVNILG 458 (483)
Q Consensus 449 ~~~~~~~~~~ 458 (483)
.+.++..+++
T Consensus 175 ~~~~~~~~~~ 184 (475)
T TIGR00924 175 NLAAVGMVIG 184 (475)
T ss_pred HHHHHHHHHH
Confidence 6655444444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=92.58 Aligned_cols=134 Identities=22% Similarity=0.248 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchh
Q 011565 323 SYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPW 402 (483)
Q Consensus 323 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (483)
...++.+++.+..+++.||++||+.+..+.....++.+.+... .+.+.......+.+...+...+...
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~ 73 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------------SNITVLIIARFLQGFGAAFALVAGA 73 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3467788899999999999999999888877777666655442 2344445555566666666667778
Q ss_pred hhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhcccC
Q 011565 403 VLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVPE 468 (483)
Q Consensus 403 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (483)
.+..|..|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+...++..+...+..+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 889999999999999999999999999999999999988 454566666666666666555555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=113.57 Aligned_cols=135 Identities=13% Similarity=0.041 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHhhhcccccccccchhhhccc
Q 011565 90 FGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGA--LSLDLGRLATGYGMGIFSYVVPVFTAEIA 167 (483)
Q Consensus 90 ~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 167 (483)
......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344566777889999999999999999999999999988888877654 45556667777777778888899999999
Q ss_pred CccchhhHHhHHHHHHHHHHHHHHHhhc--cchhHHHHHHhHHHHHHHHHHhhcCCCCh
Q 011565 168 PKELRGALTSANQLLIVIGASTFFIIGT--VATWRTLALVGVIPCAVLLLGLFLIPESP 224 (483)
Q Consensus 168 ~~~~rg~~~~~~~~~~~iG~~~~~~l~~--~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (483)
|++.|+.++++.+....+|.+++|.+.+ ..++...+++.+...++..+..+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999998877 33456777777777777666677888874
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-10 Score=106.19 Aligned_cols=130 Identities=20% Similarity=0.157 Sum_probs=95.4
Q ss_pred hhhhHHhHHH-HHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCc
Q 011565 299 INAIAFYAAN-IFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLA 374 (483)
Q Consensus 299 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (483)
......+.|. +.++.+.+. +.......++..++.++.|+++||+|||+.+..+..+..++.+++...
T Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--------- 87 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--------- 87 (366)
T ss_pred HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---------
Confidence 3445555553 445567665 455566677888999999999999999999999988888887776654
Q ss_pred cccc-chHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 375 LESV-PALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 375 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
. +...+....++.+.... ..+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+
T Consensus 88 ---~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 88 ---VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred ---hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2 34444455555555543 344566788999999999999999998888888888877766554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=106.45 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=103.9
Q ss_pred hhHHhHHHHHHHcCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccc
Q 011565 301 AIAFYAANIFQTAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALES 377 (483)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (483)
....+.+.+.++.|.+... ......++..++.++.|+++||+|||+.+..+.+...++.++....
T Consensus 54 ~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------------ 121 (476)
T PLN00028 54 AAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV------------ 121 (476)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh------------
Confidence 3445566677777876543 3445566777899999999999999999888777777766655543
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh----------hhhhHH
Q 011565 378 VPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET----------WSSYGT 447 (483)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~----------~~~~~~ 447 (483)
.+...+....++.+++.+... ....++.|.+|+++|+.+.|+.+...++|..+++.+.+.+.. .++...
T Consensus 122 ~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~ 200 (476)
T PLN00028 122 SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA 200 (476)
T ss_pred cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 233344444445555544433 344567899999999999999998888888888776655432 245667
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 011565 448 FLLYAAVNILGIVFITTVV 466 (483)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~ 466 (483)
+.+.+++.++..++.+++.
T Consensus 201 f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 201 FFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 7777776666655554443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-10 Score=95.71 Aligned_cols=173 Identities=17% Similarity=0.214 Sum_probs=126.8
Q ss_pred HHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHH
Q 011565 49 YLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAG 128 (483)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~ 128 (483)
|..+......+...+ ....++..-|.+++.+|.|.+|...+.+.-.+|..+ .++.|.+.|++|+|.++.+|.+...+|
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 444444444444443 333444556679999999999999999999999986 588999999999999999999999999
Q ss_pred HHHHHHh-------hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc-c--h
Q 011565 129 WLAIYFS-------EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV-A--T 198 (483)
Q Consensus 129 ~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~-~--~ 198 (483)
..+...+ +++|.+.+..++.|.+.+.....+.....+.|| ++||.+.++.-...+++..+-..+... + +
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~ 158 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD 158 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence 9888653 367888888888888877666666666678887 579999999999999998876665541 1 2
Q ss_pred -hHHHHHHhHHHHHHHHHHhhcCCCCh
Q 011565 199 -WRTLALVGVIPCAVLLLGLFLIPESP 224 (483)
Q Consensus 199 -wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (483)
-+..+.+.....++.++...+++..|
T Consensus 159 ~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 159 PSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 33444444445555555555555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-10 Score=107.13 Aligned_cols=149 Identities=18% Similarity=0.127 Sum_probs=130.6
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchh--HHHHHHHHHHHHHHHHHHH--------hhchhHHHHH
Q 011565 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRK--GAMRVSSFVCIAGWLAIYF--------SEGALSLDLG 144 (483)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~ 144 (483)
.-.+++|++..+...+.-+..+..++|++++|++.||+|.| ++++++++++.+..+...+ .++.+.+.+.
T Consensus 307 ~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~ 386 (477)
T PF11700_consen 307 YATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL 386 (477)
T ss_pred HHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence 45568999999999999999999999999999999999999 8999998888766666665 6788899999
Q ss_pred HHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc----c-hhHHHHHHhHHHHHHHHHHhhc
Q 011565 145 RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV----A-TWRTLALVGVIPCAVLLLGLFL 219 (483)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~----~-~wr~~f~~~~~~~~~~~~~~~~ 219 (483)
-++.|+..|..++.+.++.+|..|+++.+..+|++....-....+||++.+. . +-|+.+....++.++.+++.++
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988772 2 4788888888887787777777
Q ss_pred CCCC
Q 011565 220 IPES 223 (483)
Q Consensus 220 ~~e~ 223 (483)
++++
T Consensus 467 v~~~ 470 (477)
T PF11700_consen 467 VDVE 470 (477)
T ss_pred ccch
Confidence 7654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-10 Score=107.88 Aligned_cols=146 Identities=17% Similarity=0.133 Sum_probs=97.7
Q ss_pred hHHhHHHHHH-HcCCCCch---HHHHHHHHHHHHHHHHHHHHhhc-CCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc
Q 011565 302 IAFYAANIFQ-TAGLSPST---GTISYALLQVVVTFFNIIMIDRA-GRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376 (483)
Q Consensus 302 ~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (483)
+..+++.++. ..|.+... ....+.....++.+++|+++||+ |||+.+..+.++..++.+++... .
T Consensus 28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----------~ 97 (493)
T PRK15462 28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----------E 97 (493)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----------h
Confidence 3334444333 24666543 34444566678899999999999 99999999988888887655431 0
Q ss_pred ccchHHHHHHHHHHHHhhcccccchhhhccccCCCc--cchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHH
Q 011565 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPIN--IKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAA 453 (483)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~ 453 (483)
...........+...+.+...+...+++.|.+|++ .|.++.++.+...++|+.++|.+.+++.+ .++...|.+.++
T Consensus 98 -~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 98 -IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred -cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 11111222222333334444566678899999875 69999999999999999999999999987 566666666544
Q ss_pred HHHHH
Q 011565 454 VNILG 458 (483)
Q Consensus 454 ~~~~~ 458 (483)
..+++
T Consensus 177 gm~l~ 181 (493)
T PRK15462 177 GMIAG 181 (493)
T ss_pred HHHHH
Confidence 43333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.2e-10 Score=105.40 Aligned_cols=147 Identities=16% Similarity=0.033 Sum_probs=104.6
Q ss_pred HHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHH
Q 011565 307 ANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTL 383 (483)
Q Consensus 307 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (483)
+.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+..+..++.++.... .+...+
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~l 97 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------------ESAAQL 97 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------------cCHHHH
Confidence 445556676654 44455566778999999999999999999988887777766665543 334444
Q ss_pred HHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHH
Q 011565 384 AGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 462 (483)
....++.+.+.+...+...+.+.|.+|+++++...+..+....++..++|.+.+++.+ .++...+.+.++..++..+..
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 177 (401)
T PRK11043 98 LVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT 177 (401)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 4444454544444445556778899999889999999998999999999999999888 566666666666666555544
Q ss_pred Hhc
Q 011565 463 TTV 465 (483)
Q Consensus 463 ~~~ 465 (483)
++.
T Consensus 178 ~~~ 180 (401)
T PRK11043 178 LRL 180 (401)
T ss_pred HHc
Confidence 433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.4e-10 Score=109.12 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=125.5
Q ss_pred cchHHHH-hhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q 011565 71 PTQNAIR-EDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATG 149 (483)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (483)
..+|.+. +++|.++..+|++.+++.+|..++.+..+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4466554 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHH
Q 011565 150 YGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLL 215 (483)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~ 215 (483)
++.........+.+.+..|++.|||.++++.+....+..+|.++.+ ..|-+..+.+.++..++..+
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 9999888888999999999999999999988777777666666655 66888888877665555433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=108.45 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=104.5
Q ss_pred HHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHH
Q 011565 310 FQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGV 386 (483)
Q Consensus 310 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (483)
.++.+.+. +.....+.+...+..++.|++.||+|||+++..+..+..++.+.+... .+. ...
T Consensus 30 ~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~------------~~~---~~~ 94 (393)
T PRK11195 30 LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG------------IHP---LLA 94 (393)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH------------HHH---HHH
Confidence 44445444 344556677788899999999999999999999988887766655432 111 333
Q ss_pred HHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 011565 387 LVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVV 466 (483)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (483)
.++.+.+.+...|...+++.|.+|+++|++++|+.+....+|..+||.++|++.+......+.+.+.+.++. .+..+.+
T Consensus 95 r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~-~~~~~~l 173 (393)
T PRK11195 95 YGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA-ALFNLFI 173 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcC
Confidence 455677777778888999999999999999999999999999999999999998865444444444333333 3334455
Q ss_pred cCC
Q 011565 467 PET 469 (483)
Q Consensus 467 ~~~ 469 (483)
||.
T Consensus 174 ~~~ 176 (393)
T PRK11195 174 PRL 176 (393)
T ss_pred CCC
Confidence 543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.1e-10 Score=105.72 Aligned_cols=153 Identities=23% Similarity=0.186 Sum_probs=115.0
Q ss_pred hHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchH
Q 011565 305 YAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPAL 381 (483)
Q Consensus 305 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (483)
.++.+.++.+.+.. .......++..++.++.|++.||+|||+.+..+..+..++...+... .+..
T Consensus 13 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------------~~~~ 80 (377)
T PRK11102 13 ALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------------QTID 80 (377)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH------------ccHH
Confidence 34455555677654 34455667788999999999999999999998888888877776653 3344
Q ss_pred HHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHH
Q 011565 382 TLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIV 460 (483)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 460 (483)
.+.....+.+.+.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+.+.++..+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 455555566666666667777889999999999999999999999999999999998887 5666667776766666655
Q ss_pred HHHhcccCC
Q 011565 461 FITTVVPET 469 (483)
Q Consensus 461 ~~~~~~~~~ 469 (483)
...+..+|+
T Consensus 161 ~~~~~~~~~ 169 (377)
T PRK11102 161 LVFFFIPET 169 (377)
T ss_pred HHHHhCCcc
Confidence 555555554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=9e-10 Score=103.33 Aligned_cols=158 Identities=13% Similarity=0.014 Sum_probs=109.3
Q ss_pred hhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc
Q 011565 300 NAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376 (483)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (483)
..+...+|.+.++.+.+.. .....+.++..++.+..|+++||+|||+.+.........+.......
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 76 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP----------- 76 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh-----------
Confidence 3445556666666677654 44455567788999999999999998887654433333322111110
Q ss_pred ccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH
Q 011565 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVN 455 (483)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 455 (483)
.+...+...-++.+.+.+. .........|.+|+++|+++.++.+....+|..+++.+.+++.+ .++...+.+.+++.
T Consensus 77 -~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~ 154 (368)
T TIGR00903 77 -FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVA 154 (368)
T ss_pred -ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 2345555555566655543 33444556889999999999999999999999999999998887 66666777777777
Q ss_pred HHHHHHHHhcccCCC
Q 011565 456 ILGIVFITTVVPETK 470 (483)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (483)
++..++.++..||.+
T Consensus 155 ~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 155 AAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHcCCCC
Confidence 777676677777643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-10 Score=107.52 Aligned_cols=156 Identities=12% Similarity=0.002 Sum_probs=107.2
Q ss_pred HhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccch
Q 011565 304 FYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPA 380 (483)
Q Consensus 304 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (483)
...|.+.+ .|.+. +.......++..++.+..|+++||+|||+.+..+..+.+++.+++.... ....+.
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 118 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVP--------WATSSI 118 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccc--------cccchH
Confidence 33444443 36664 4445566777889999999999999999998888777777766554320 001223
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHH
Q 011565 381 LTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET--WSSYGTFLLYAAVNILG 458 (483)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~ 458 (483)
..+....++.+.+.+...+.....+.|.+|+++|+++.|+.+....+|+.+++.+.+...+ .++...+++.+++.++.
T Consensus 119 ~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~ 198 (438)
T TIGR00712 119 AIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIV 198 (438)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3334444455655555566667788899999999999999999999999999988776544 45566677767766666
Q ss_pred HHHHHhcccC
Q 011565 459 IVFITTVVPE 468 (483)
Q Consensus 459 ~~~~~~~~~~ 468 (483)
.+..+++.+|
T Consensus 199 ~~~~~~~~~~ 208 (438)
T TIGR00712 199 ALFAFAMMRD 208 (438)
T ss_pred HHHHHHhccC
Confidence 5555555554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=106.18 Aligned_cols=151 Identities=11% Similarity=0.138 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhh----hhchhHHHHH-
Q 011565 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIAD----FIGRKGAMRV- 120 (483)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~~~~- 120 (483)
++...+..+.+-..|......+.. +++.+++|++....+.+--..-+...+.+++.|..+| ||||||.++.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~----tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~ 107 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYL----TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILA 107 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc----cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHH
Confidence 334444444444445554444444 4478899999998888888888999999999999999 5899877665
Q ss_pred HHHHHHHHHHHHHHhhch-----------------hHHHHHHHHhhhcccccccccchhhhcccCccchhh-HHhHHHHH
Q 011565 121 SSFVCIAGWLAIYFSEGA-----------------LSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGA-LTSANQLL 182 (483)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~-----------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~-~~~~~~~~ 182 (483)
+.++.+++.++..++.++ ..++++--+.=++.-.....+.+++.|...++++.+ +.+.+...
T Consensus 108 ~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f 187 (498)
T KOG0637|consen 108 GSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFF 187 (498)
T ss_pred hhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHH
Confidence 556677777777776542 234444455556666778889999999997766666 99999999
Q ss_pred HHHHHHHHHHhhccchhH
Q 011565 183 IVIGASTFFIIGTVATWR 200 (483)
Q Consensus 183 ~~iG~~~~~~l~~~~~wr 200 (483)
.++|..+|..++...+|+
T Consensus 188 ~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 188 MAVGNVLGYALGSYLGLY 205 (498)
T ss_pred HHhcceeeeecccccCce
Confidence 999999999999877765
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.2e-10 Score=105.62 Aligned_cols=143 Identities=13% Similarity=-0.036 Sum_probs=107.8
Q ss_pred HHHHhhhcCchhHHHHHHHHHHH-HHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH------hhchhHHHHHHH
Q 011565 74 NAIREDLSLSLAEYSVFGSILTF-GAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF------SEGALSLDLGRL 146 (483)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~ 146 (483)
+.+.+|.|.++++.|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++.+.+.....
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 44566789999999999888764 66677899999999999999998877765333333221 123334455556
Q ss_pred HhhhcccccccccchhhhcccCc-cchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH
Q 011565 147 ATGYGMGIFSYVVPVFTAEIAPK-ELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~-~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~ 216 (483)
+.+++.+...+...+.+.+..++ +++++.+++.+....+|..++|.+++ ..||+..|++.++..++..+.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 66777777777888887777766 78899999999999999999998877 458889998877766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-10 Score=108.48 Aligned_cols=145 Identities=15% Similarity=0.104 Sum_probs=95.2
Q ss_pred hHHhHHHHH-HHcCCCCchHHHHH---HHHHHHHHHHHHHHHhh-cCCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc
Q 011565 302 IAFYAANIF-QTAGLSPSTGTISY---ALLQVVVTFFNIIMIDR-AGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376 (483)
Q Consensus 302 ~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (483)
...+++.++ +..|.+........ ........+++|+++|| +|||+.+..+..+..++..++... .
T Consensus 40 ~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~----------~ 109 (500)
T PRK09584 40 LQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS----------G 109 (500)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----------c
Confidence 333444443 34566654333222 22333445689999999 599999999988888876666542 0
Q ss_pred ccchHHHHHHHHHHHHhhcccccchhhhccccCCCcc--chhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHH
Q 011565 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINI--KGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAA 453 (483)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~ 453 (483)
.....+.....+.+.+.+...+...++..|.+|++. +..+.++.+...++|..++|.+.|++.+ .++...|.+.++
T Consensus 110 -~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 110 -HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred -ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 122233344445555666566777788999998643 4567888899999999999999999988 566666666554
Q ss_pred HHHH
Q 011565 454 VNIL 457 (483)
Q Consensus 454 ~~~~ 457 (483)
...+
T Consensus 189 ~~~i 192 (500)
T PRK09584 189 GMLI 192 (500)
T ss_pred HHHH
Confidence 3333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.6e-10 Score=105.51 Aligned_cols=148 Identities=15% Similarity=0.157 Sum_probs=108.8
Q ss_pred HHHHhhhcCchhHHHHHHHHHH-HHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHH---HHh-hchhHHHHHH---
Q 011565 74 NAIREDLSLSLAEYSVFGSILT-FGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAI---YFS-EGALSLDLGR--- 145 (483)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~-l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r--- 145 (483)
+.+.+++|.++++.+++.+... .+..++.++.|++.||+|+|+.+..+..+..+..+.. ++. ++.+.+++.-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3467789999999999987654 5689999999999999999998887777666554433 344 3556555444
Q ss_pred -HHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhccchhHHHHHHhHHHHHHHHHHhhcCC
Q 011565 146 -LATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLFLIP 221 (483)
Q Consensus 146 -~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (483)
+..|++.+...+....++.+.+|.++++...+....+..++..++..+....||+..|.+.++++++.++.....+
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777888888999999888777655555555555555666666688999999998888877665554433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-10 Score=107.03 Aligned_cols=131 Identities=16% Similarity=0.103 Sum_probs=95.7
Q ss_pred HHcCCCCchHH---HHHHHHHHHHHHHHHHHHhh-cCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHH
Q 011565 311 QTAGLSPSTGT---ISYALLQVVVTFFNIIMIDR-AGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGV 386 (483)
Q Consensus 311 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (483)
+..|.+..... ..+.....+..+++|+++|| +|||+++..+.++..++.+.+.... .....+...
T Consensus 43 ~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~-----------~~~~ll~~~ 111 (489)
T PRK10207 43 KQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL-----------LKPDLIFIA 111 (489)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc-----------cchhHHHHH
Confidence 34466554333 33344455666789999999 9999999999999999887777531 112223344
Q ss_pred HHHHHHhhcccccchhhhccccCCCc--cchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHH
Q 011565 387 LVYIGSFSSGMGATPWVLMSEIFPIN--IKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYA 452 (483)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~ 452 (483)
..+.+.+.+...+...+++.|.+|++ +|+.+.++.+...++|..++|.+.|++.+ .++...|++.+
T Consensus 112 ~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~ 180 (489)
T PRK10207 112 LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG 180 (489)
T ss_pred HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 55566666777788889999999877 45788999999999999999999999988 56555665543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=105.11 Aligned_cols=127 Identities=19% Similarity=0.121 Sum_probs=89.0
Q ss_pred cCcchHHHHh-hhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHH-HH---HhhchhHHHH
Q 011565 69 SSPTQNAIRE-DLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLA-IY---FSEGALSLDL 143 (483)
Q Consensus 69 ~~~~~~~i~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~ 143 (483)
.....|.+.+ .+|.+..+.++....+.++..++.+++|+++||+|||++++.+.++..+.... .. ..+++..+.+
T Consensus 257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (434)
T PRK15075 257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA 336 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 3344565554 48999999999999999999999999999999999999988765544332221 11 1234444445
Q ss_pred HHHHhhhcccccccccchhhhcccCccchhhHHhHH-HHHHHHHHHHHHHhhc
Q 011565 144 GRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSAN-QLLIVIGASTFFIIGT 195 (483)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~-~~~~~iG~~~~~~l~~ 195 (483)
..++.|++.+...+....++.|.+|+++|+...++. +.+..++..++|.+.+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g 389 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST 389 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence 556666776666666778899999999999999885 3344444555665554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.7e-10 Score=106.60 Aligned_cols=113 Identities=17% Similarity=0.249 Sum_probs=96.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHhhhcccccccccch
Q 011565 83 SLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS-EGALSLDLGRLATGYGMGIFSYVVPV 161 (483)
Q Consensus 83 s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (483)
++.+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888899999999999999999999999999998888888777765 36677778888999999988999999
Q ss_pred hhhcccC-------ccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 162 FTAEIAP-------KELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 162 ~i~~~~~-------~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
+++|..+ ++++|.+.++.+....+|..+++.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 456799999999888888888887765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=103.82 Aligned_cols=151 Identities=11% Similarity=0.026 Sum_probs=95.5
Q ss_pred chHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHH--H--hhchhHHHHHHH
Q 011565 72 TQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY--F--SEGALSLDLGRL 146 (483)
Q Consensus 72 ~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~ 146 (483)
.+|. +.+++|.+..+.++..+...++..+++++.|+++||+|||+.+.++..+.++...... . .++.+..+..-.
T Consensus 265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (432)
T PRK10406 265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVM 344 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3454 4567899999999999998888899999999999999999988776655443332221 1 123332222222
Q ss_pred HhhhcccccccccchhhhcccCccchhhHHhHHHHHHHH-HHHHHHHhhc---cch-hHHHHHHhHHHHHHHHHHhhcCC
Q 011565 147 ATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVI-GASTFFIIGT---VAT-WRTLALVGVIPCAVLLLGLFLIP 221 (483)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~i-G~~~~~~l~~---~~~-wr~~f~~~~~~~~~~~~~~~~~~ 221 (483)
+.+++.+...+....++.|++|++.|+.++|+.+....+ .....|.+.. ..| |...++..++..++..+..++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 345 CALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 222333333445667889999999999999987654332 2333444433 223 55566666666666555544444
Q ss_pred C
Q 011565 222 E 222 (483)
Q Consensus 222 e 222 (483)
+
T Consensus 425 ~ 425 (432)
T PRK10406 425 R 425 (432)
T ss_pred h
Confidence 3
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-10 Score=107.49 Aligned_cols=168 Identities=17% Similarity=0.128 Sum_probs=145.3
Q ss_pred HHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhc--hhHHHHHHHHHHHHHHHH
Q 011565 54 VAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIG--RKGAMRVSSFVCIAGWLA 131 (483)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~G--rr~~~~~~~~~~~~~~~~ 131 (483)
...++..............+|.+.++.+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..++++..+++.+.
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~ 381 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF 381 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence 334444444444555566688899999999999999999999999999999999999988 566778899999999999
Q ss_pred HHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc-----chhHHHHHHh
Q 011565 132 IYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV-----ATWRTLALVG 206 (483)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~-----~~wr~~f~~~ 206 (483)
++++++++.++..-.+.|++.|........++.|..+.++-..+.|+.....+++.++||.+++. -+|...|+..
T Consensus 382 ~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~ 461 (509)
T KOG2504|consen 382 LPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFC 461 (509)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhc
Confidence 99999999999999999999999888888899999999999999999999999999999999882 2499999998
Q ss_pred HHHHHHHHHHhhcCC
Q 011565 207 VIPCAVLLLGLFLIP 221 (483)
Q Consensus 207 ~~~~~~~~~~~~~~~ 221 (483)
++..++....++..+
T Consensus 462 g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 462 GLCFLLSAVLLLILR 476 (509)
T ss_pred ChHHHHHHHHHHHhH
Confidence 888888777776666
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.8e-09 Score=99.52 Aligned_cols=149 Identities=11% Similarity=0.098 Sum_probs=98.3
Q ss_pred HcCCCCchH---HHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHH
Q 011565 312 TAGLSPSTG---TISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLV 388 (483)
Q Consensus 312 ~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (483)
+.+.+.... ..+..+.+.+.++..|++.||+|.|+.+.++.++..+..+.+.+.. . ....+...+.+..+
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~--~-----~~~~s~~~lli~r~ 136 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV--Q-----NPNTPFGIFIVIAL 136 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--c-----ccCCCHHHHHHHHH
Confidence 456776444 3444566668888899999999999999888888877776665421 0 01134555555566
Q ss_pred HHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH-----h--------------hhhhHHHH
Q 011565 389 YIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE-----T--------------WSSYGTFL 449 (483)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~-----~--------------~~~~~~~~ 449 (483)
+.+.. +...+.....+++.+|+++||++.|+....+++|..+++.+.+.+. + .+.....+
T Consensus 137 l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~ 215 (462)
T PRK15034 137 LCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAW 215 (462)
T ss_pred HHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHH
Confidence 66665 4456777888999999999999999997777777766655554432 1 11333444
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 011565 450 LYAAVNILGIVFITTVVPE 468 (483)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~ 468 (483)
+.....++..++.++..++
T Consensus 216 ~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 216 IWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 5555555555555555554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=119.11 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=117.2
Q ss_pred HHHhhhcCchh-HHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhccc
Q 011565 75 AIREDLSLSLA-EYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMG 153 (483)
Q Consensus 75 ~i~~~~~~s~~-~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 153 (483)
.+.+++|.+.. +.+++.+...++..++.++.|+++||+++|+++.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45677899998 99999999999999999999999999999999999999988888888888899999999999999999
Q ss_pred ccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc-----chhHHHHHHhHHHHH
Q 011565 154 IFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV-----ATWRTLALVGVIPCA 211 (483)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~-----~~wr~~f~~~~~~~~ 211 (483)
...+...+++.+..|+++||+++++.+....+|.++++.++.. .++...|++.+.+.+
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9888999999999999999999999998888888776666552 345555655444433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=115.23 Aligned_cols=187 Identities=10% Similarity=0.003 Sum_probs=117.2
Q ss_pred HhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHc-CCC----CchHHHHHHHHHHHHHHHHHHHHhhcCCccch
Q 011565 274 DLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTA-GLS----PSTGTISYALLQVVVTFFNIIMIDRAGRKPLL 348 (483)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 348 (483)
.+++++.++++++..++..+........+..+........ +.+ .+.....+.+..++..++.|+++||++||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 4567777777766666655543322222232322222211 111 12334445667778899999999999999976
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHH
Q 011565 349 LFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFG 428 (483)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 428 (483)
........+...+..... . ..+.+.+++..++.+.+.+...|...+++.+.+|+++++.++|+.++...+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~-~--------~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig 156 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGF-H--------LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIA 156 (1140)
T ss_pred HHHHHHHHHHHHHHHHHH-H--------HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHH
Confidence 442222222221111111 0 0345667777777788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccCC
Q 011565 429 AWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 429 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
.++||.++|++.+...+..+++..++..+..+++.+..++.
T Consensus 157 ~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 157 ILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999884434444344444444444444445443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.2e-08 Score=97.01 Aligned_cols=147 Identities=19% Similarity=0.108 Sum_probs=119.5
Q ss_pred cchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh-hchhHHHHHHHHHHHHHHHHHHHhhc--------hhHH
Q 011565 71 PTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADF-IGRKGAMRVSSFVCIAGWLAIYFSEG--------ALSL 141 (483)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l 141 (483)
.+...+.+.+|.+.++...+...+....-+..+++|+++|+ +||++.+.++.++..+|.++.+++.. ....
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~ 88 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD 88 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence 34445677899999999999999999999999999999995 69999999999999999988877531 2235
Q ss_pred HHHHHHhhhcccccccccchhhhcccCccc---hhhHHhHHHHHHHHHHHHHHHhhc----c-------chhHHHHHHhH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIAPKEL---RGALTSANQLLIVIGASTFFIIGT----V-------ATWRTLALVGV 207 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---rg~~~~~~~~~~~iG~~~~~~l~~----~-------~~wr~~f~~~~ 207 (483)
+++-.+..+|.|+.-|+..+...|.+++++ |-..+.++..+.++|..+++.+.. . .+|...|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 677888889999999999999999997543 566788888899999988876654 1 25999999988
Q ss_pred HHHHHHHHHh
Q 011565 208 IPCAVLLLGL 217 (483)
Q Consensus 208 ~~~~~~~~~~ 217 (483)
+..+++++.+
T Consensus 169 i~m~ia~lvf 178 (654)
T TIGR00926 169 ILMILALIVF 178 (654)
T ss_pred HHHHHHHHHH
Confidence 8777755543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=96.38 Aligned_cols=112 Identities=21% Similarity=0.181 Sum_probs=90.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcc
Q 011565 317 PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSG 396 (483)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (483)
.+..+..+++..++.++..|.++||+|||.++..+....++..++.+.. .+...++..-++.|. .-+
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S------------~~F~afv~aR~l~Gi-~kg 136 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS------------RNFAAFVLARFLGGI-FKG 136 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhh-ccC
Confidence 3677788899999999999999999999999999988888876666653 333222222334444 445
Q ss_pred cccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 397 MGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
-..+..++++|++++++|+.+++.++....+|.++||.++|++..
T Consensus 137 nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 137 NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 556678999999999999999999999999999999999999877
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=97.92 Aligned_cols=148 Identities=22% Similarity=0.193 Sum_probs=131.4
Q ss_pred HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhccccc
Q 011565 76 IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIF 155 (483)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 155 (483)
-.+++|++..+...+.-...+..+++++++|+|.||+|.|+++.++++++.+.++..-+...-..+.++-.+.|...|+.
T Consensus 279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~ 358 (438)
T COG2270 279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA 358 (438)
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence 34599999999999999999999999999999999999999999999999999998888887777888889999999999
Q ss_pred ccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc-----cchhHHHHHHhHHHHHHHHHHhhcCCCC
Q 011565 156 SYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT-----VATWRTLALVGVIPCAVLLLGLFLIPES 223 (483)
Q Consensus 156 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (483)
+..+.++..+..|+++-++.+|++....-.+..+||++.+ .-+-|..+....++..+.++..+.+|++
T Consensus 359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999998876 2246777777777777777777777765
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-09 Score=95.40 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=100.2
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccc
Q 011565 79 DLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYV 158 (483)
Q Consensus 79 ~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (483)
.+|.++++.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++....++... ...-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999888888887766666554433 34566889999999999
Q ss_pred cchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhH
Q 011565 159 VPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGV 207 (483)
Q Consensus 159 ~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~ 207 (483)
..+...+..|++ .+.+.++. ....+|..+.|.+.+ ..|.+..|++..
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 999999988654 45666665 456678888887655 457777776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=97.89 Aligned_cols=132 Identities=13% Similarity=-0.007 Sum_probs=101.0
Q ss_pred hhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc
Q 011565 300 NAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376 (483)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (483)
.......|.+.++.+.+. +.......++..++++..+++.||+|||+.+..+..+.+++.+++.... .
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~---------~ 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA---------E 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH---------h
Confidence 334455566666667765 4555666788889999999999999999999999999888877654431 1
Q ss_pred ccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
..+...+....++.+.+.+...+....++.+..|++++++..++.+....+|..++|.+.+.+.
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344555556666677666666777778888889899999999999999999999999988774
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-09 Score=103.66 Aligned_cols=151 Identities=15% Similarity=0.032 Sum_probs=102.0
Q ss_pred CcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHH--------HHHHHHH--HHHHHHHHH-hhc
Q 011565 70 SPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAM--------RVSSFVC--IAGWLAIYF-SEG 137 (483)
Q Consensus 70 ~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~--------~~~~~~~--~~~~~~~~~-~~~ 137 (483)
...+|. +.+++|.+..+.+++.+...++..++.++.|+++||+++|+.. ..+.... ++..+.... ..+
T Consensus 281 ~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (465)
T TIGR00894 281 PTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA 360 (465)
T ss_pred HHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 334553 4567899999999999999999999999999999998755321 1111111 111111122 234
Q ss_pred hhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc-------chhHHHHHHhHHHH
Q 011565 138 ALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV-------ATWRTLALVGVIPC 210 (483)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~-------~~wr~~f~~~~~~~ 210 (483)
.+..++.-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+. .+|+..|++.++..
T Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~ 439 (465)
T TIGR00894 361 FYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVN 439 (465)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHH
Confidence 44444555555555555555555555676654 89999999999999999999988762 24889999988777
Q ss_pred HHHHHHhhcCC
Q 011565 211 AVLLLGLFLIP 221 (483)
Q Consensus 211 ~~~~~~~~~~~ 221 (483)
++..+...+.+
T Consensus 440 ~i~~i~~~~~~ 450 (465)
T TIGR00894 440 ILCVIFYLIFG 450 (465)
T ss_pred HHHHHHeeeee
Confidence 77666544443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-10 Score=98.95 Aligned_cols=145 Identities=20% Similarity=0.110 Sum_probs=125.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcc
Q 011565 317 PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSG 396 (483)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (483)
.+......++.+++.+++.|.+.||+|+|..+.+|+..+..+..++.+. .....++++-.+-+.+...
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------------~sy~~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------------NSYPMLFVARSLQGVGSAF 175 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------------chhHHHHHHHHHhhhhHHH
Confidence 3566677788999999999999999999999999999999988888875 5667788888888888888
Q ss_pred cccchhhhccccCCCcc-chhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 011565 397 MGATPWVLMSEIFPINI-KGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVPETKGRT 473 (483)
Q Consensus 397 ~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (483)
......+++++.+|.+. |++++|+.-.+..+|-.+||+++|.+++ .|...+|.+++.++++-..+.++.++.++.++
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 88888899999999765 6999999999999999999999999999 78899999999999998888777766544443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-07 Score=85.58 Aligned_cols=358 Identities=14% Similarity=0.001 Sum_probs=178.3
Q ss_pred cCcchHHHHhhhcC-chhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHH------Hhh-----
Q 011565 69 SSPTQNAIREDLSL-SLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY------FSE----- 136 (483)
Q Consensus 69 ~~~~~~~i~~~~~~-s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~------~~~----- 136 (483)
.....+.+..+..- +---.+...-.-.+...+.++..|.+.||..|.++...+.+..-++..+++ +..
T Consensus 21 w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~ 100 (432)
T PF06963_consen 21 WEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSS 100 (432)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 33334434444421 333334444445567788889999999999999988777665433332222 111
Q ss_pred -chhH---HHHHHHHhhhccc-ccccccchhhhcccC------ccchhhHHhHHH----HHHHHHHHHHHHhhccchhHH
Q 011565 137 -GALS---LDLGRLATGYGMG-IFSYVVPVFTAEIAP------KELRGALTSANQ----LLIVIGASTFFIIGTVATWRT 201 (483)
Q Consensus 137 -~~~~---l~~~r~l~G~~~g-~~~~~~~~~i~~~~~------~~~rg~~~~~~~----~~~~iG~~~~~~l~~~~~wr~ 201 (483)
+-+. +++.-.+.|.-.- .......++=.||.. ++.+.+..+... ....+|+++.+.+....+.+.
T Consensus 101 ~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~ 180 (432)
T PF06963_consen 101 QSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVI 180 (432)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence 1122 2222222222111 112222333345542 333445555443 444555555555544667777
Q ss_pred HHHHhHHHHHHHHHH-hhcC----CCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhh
Q 011565 202 LALVGVIPCAVLLLG-LFLI----PESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLF 276 (483)
Q Consensus 202 ~f~~~~~~~~~~~~~-~~~~----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (483)
...+.+...++.++. ++++ ...|. +..+++.++.+....... . ..............+.-+....+++..+
T Consensus 181 ~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~w~~Y~ 256 (432)
T PF06963_consen 181 AAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEES--S-SESSSDPSILKRLWNPLRTIIRGWRTYF 256 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCccccccccccc--c-ccccchhhHHHHHHHHHHHHhccHHHHH
Confidence 776666666554443 3332 22232 222222111110000000 0 0000000111111111122244566666
Q ss_pred hcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHH---HHHHHHHHHHHHHHHHhhcCCccchhhHhH
Q 011565 277 QKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTIS---YALLQVVVTFFNIIMIDRAGRKPLLLFAAT 353 (483)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 353 (483)
+.+.+...+....++.. ..+... .+..+....|.++...+.. -.+.++.+.++..++.+|+|..+.-.++..
T Consensus 257 ~q~vflas~alalLY~T-VLsf~~----lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~ 331 (432)
T PF06963_consen 257 RQPVFLASFALALLYFT-VLSFGG----LMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLW 331 (432)
T ss_pred hCHHHHHHHHHHHHHHH-HhcCcH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 66655544443333333 222222 3333444558887655444 456777889999999999998877777766
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHH
Q 011565 354 GLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAIS 433 (483)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 433 (483)
...++..+........+.+ .+..+...++....+.-.+.-++--...-+++|..|+++||...|+.+..+++...+.-
T Consensus 332 ~q~~~L~~~v~~~~~~~~~--~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 332 WQWVCLALCVVSFWAPGSP--FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred HHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5544443333332222100 01122233333334444444445555677889999999999999999999999887766
Q ss_pred HHHH
Q 011565 434 YTFN 437 (483)
Q Consensus 434 ~~~g 437 (483)
.+.-
T Consensus 410 ~~~i 413 (432)
T PF06963_consen 410 VLTI 413 (432)
T ss_pred HHHh
Confidence 5543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=97.15 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=110.7
Q ss_pred chhhhHHhHHHHHHHcCCCCchHHHHHHHHHH--HHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 298 GINAIAFYAANIFQTAGLSPSTGTISYALLQV--VVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
..+.+..+.+.+.+..|.+......+..++.. ...+..|++.||+|+|+++.++.++..++.++.++.....
T Consensus 42 ~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~------ 115 (591)
T PTZ00207 42 FMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV------ 115 (591)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 34566677788877788887655554444333 3445789999999999999999999999888777641000
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVN 455 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 455 (483)
-..+.+.+.+...+.+.+.+...+.....+.+.+| ++||.+.|+......+|+++.+.+...+...+....+++.+++.
T Consensus 116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~ 194 (591)
T PTZ00207 116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFA 194 (591)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 01234455555556666655555555667778887 78899999999999999986555544444434455666667666
Q ss_pred HHHHHHHHhcccC
Q 011565 456 ILGIVFITTVVPE 468 (483)
Q Consensus 456 ~~~~~~~~~~~~~ 468 (483)
++..++.+.+++.
T Consensus 195 ~vv~ll~~~~vr~ 207 (591)
T PTZ00207 195 LVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHhheeC
Confidence 6666666555543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=95.57 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=121.1
Q ss_pred ccccCcchHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHh-hchhHHHH
Q 011565 66 VGYSSPTQNAIREDLS-LSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS-EGALSLDL 143 (483)
Q Consensus 66 ~~~~~~~~~~i~~~~~-~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 143 (483)
.+.+....+...+|.| .+....+.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+
T Consensus 223 ~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~ 302 (400)
T PF03825_consen 223 HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVA 302 (400)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3334444555677777 677778888888888999999999999999999999999999999988888887 55554333
Q ss_pred ----HHHHhhhcccccccccchhhhcccCccchhhHHhHHHH-HHHHHHHHHHHhhc----c------chhHHHHHHhHH
Q 011565 144 ----GRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQL-LIVIGASTFFIIGT----V------ATWRTLALVGVI 208 (483)
Q Consensus 144 ----~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~-~~~iG~~~~~~l~~----~------~~wr~~f~~~~~ 208 (483)
...++|+..+..+..+..++.+..|++.|+++.+++.. ..++|..+|..+++ . +.|...+.+.+.
T Consensus 303 ~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~ 382 (400)
T PF03825_consen 303 LQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAV 382 (400)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 35579999999999999999999999999999998765 46788888887777 2 235666666666
Q ss_pred HHHHHHHH-hhcCCC
Q 011565 209 PCAVLLLG-LFLIPE 222 (483)
Q Consensus 209 ~~~~~~~~-~~~~~e 222 (483)
..++..++ +++.+|
T Consensus 383 ~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 383 MALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHhhccC
Confidence 65554433 445554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=102.73 Aligned_cols=151 Identities=13% Similarity=-0.008 Sum_probs=112.8
Q ss_pred hhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHH
Q 011565 291 MVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFF 367 (483)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (483)
..+...........-++.+.+..+.++ +.....+.++..++.++.+++.||.+||+.+.++.++++++.++..+..+
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf 120 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF 120 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence 333333333445555566656666654 55666778888999999999999999999999999999999988876543
Q ss_pred HHhcCCc-------------------------------------cc--ccchHHHHHHHHHHHHhhcccccchhhhcccc
Q 011565 368 LKTYGLA-------------------------------------LE--SVPALTLAGVLVYIGSFSSGMGATPWVLMSEI 408 (483)
Q Consensus 368 ~~~~~~~-------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (483)
..+.... .. ...+..+++.-++.|.+.+...+...+++.|.
T Consensus 121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~ 200 (633)
T TIGR00805 121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDF 200 (633)
T ss_pred hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhcc
Confidence 3210000 00 01244555677788888888888889999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 409 FPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 409 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
+|+++|+...|+.+....+|..+|+.+++++.+
T Consensus 201 ~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 201 AKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred CCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999999999999999999999999998775
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-08 Score=91.27 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=118.3
Q ss_pred hhhHHhHHHHHHHcCCCCc----hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 300 NAIAFYAANIFQTAGLSPS----TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
...++-.+.+.++.|++.. .....+..+..+..+.+|++.||+|.|+.+..+.+...+...++.+.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---------- 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---------- 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----------
Confidence 4566666777677777754 44555567888999999999999999999999988888888777775
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSS--YGTFLLYAA 453 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~ 453 (483)
.+...+.+.-++.|.+.+... ....++...+|+++|+++.|+.+....+|.++++++.+++...++ +.....+..
T Consensus 113 --~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl 189 (511)
T TIGR00806 113 --TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISL 189 (511)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 456677778888888888887 788999999999999999999999999999999999998555332 233333444
Q ss_pred HHHHHHHHHHhccc
Q 011565 454 VNILGIVFITTVVP 467 (483)
Q Consensus 454 ~~~~~~~~~~~~~~ 467 (483)
.....+++..+++|
T Consensus 190 ~s~~~a~~~a~~LP 203 (511)
T TIGR00806 190 VFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHHHHhCC
Confidence 44444444455555
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.6e-09 Score=96.59 Aligned_cols=124 Identities=15% Similarity=0.051 Sum_probs=98.2
Q ss_pred cchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-chhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q 011565 71 PTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI-GRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATG 149 (483)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 149 (483)
..+|.+.++.|.+..+.+++.+.+.++..+++++.|++.||+ +||+.+.++..+.+++.+...+.++..... .-++.|
T Consensus 218 ~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 296 (355)
T TIGR00896 218 GWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLG 296 (355)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 345667778899999999999999999999999999999999 567777788888888877777766543332 457789
Q ss_pred hcccccccccchhhhcccC-ccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 150 YGMGIFSYVVPVFTAEIAP-KELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G 343 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVG 343 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887777765554 566788888888777777778877665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=93.91 Aligned_cols=158 Identities=17% Similarity=0.075 Sum_probs=102.8
Q ss_pred HHhHHHHHHHcCCCCchHHHHHHHHHH-HHHHHHHHHHhhc-----CCccch-hhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 303 AFYAANIFQTAGLSPSTGTISYALLQV-VVTFFNIIMIDRA-----GRKPLL-LFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
..-.+.+.++.|.+.........+... ...++.|+++||+ |||+.+ ..+.....+....+.+. .
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---------~ 78 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLVGLPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---------V 78 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---------C
Confidence 334556666678887655555422211 2388999999997 788864 45555555554444332 1
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hh--------hhH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WS--------SYG 446 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~--------~~~ 446 (483)
+....+.+....++.+.......+...+++.|.+|+++|+.+.|+......+|.++++.+.+.+.+ .+ +..
T Consensus 79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY 158 (356)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence 112333444444445555555567778899999999999999999999999999999999988876 44 555
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC
Q 011565 447 TFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
.+.+.++..++..+..++..+|.
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Confidence 66666665555544444445554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-08 Score=90.26 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=114.0
Q ss_pred hhhhHHhHHHHHHHcCCCCchHHHH---HHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 299 INAIAFYAANIFQTAGLSPSTGTIS---YALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
...+....+.+.++.+++.++...+ ..+.+.+.++.-|.+.||+|.|+....+.++..+-++.+.+..
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~--------- 100 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV--------- 100 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc---------
Confidence 3344444444446667877655444 4556778889999999999999999999999888888887762
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hh---hhHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WS---SYGTFLLY 451 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~---~~~~~~~~ 451 (483)
.+.+.+.+....++.|. .++.+.+....+++.+|++++|.++|+.. .+++|..+...+.+.+.. .+ +.....+.
T Consensus 101 ~~~~~~~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~ 178 (417)
T COG2223 101 TYPSTWQLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIY 178 (417)
T ss_pred cCCchHHHHHHHHHHhc-ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 22333344444444444 44555677789999999999999999999 999999998888888877 44 45555666
Q ss_pred HHHHHHHHHHHHhcccC
Q 011565 452 AAVNILGIVFITTVVPE 468 (483)
Q Consensus 452 ~~~~~~~~~~~~~~~~~ 468 (483)
....++..+..++...+
T Consensus 179 ~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 179 VVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 66666666666666543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-08 Score=95.87 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=96.1
Q ss_pred HhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHhhhcccc
Q 011565 77 REDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE--GALSLDLGRLATGYGMGI 154 (483)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 154 (483)
++.+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 445676665555555555677888999999999999999999999999888888777754 677777788899999999
Q ss_pred cccccchhhhcccCcc-------chhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 155 FSYVVPVFTAEIAPKE-------LRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 155 ~~~~~~~~i~~~~~~~-------~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
..+...++..|..|.+ ++|...++.+....+|..+|+.+.+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888654 3588899999888888888877654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.6e-09 Score=93.49 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchh
Q 011565 94 LTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRG 173 (483)
Q Consensus 94 ~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg 173 (483)
..+.-..|.++.+.+.||+|||+.+..+.++++++.++...+.+-....+.-|..-++..+.+.+.+.|.-|.+|.+-|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34566788999999999999999999999999999998877754433333333333444566778999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHhhccc--hhHHHHHHhHHHHHHHHHHhhcCCCC
Q 011565 174 ALTSANQLLIVIGASTFFIIGTVA--TWRTLALVGVIPCAVLLLGLFLIPES 223 (483)
Q Consensus 174 ~~~~~~~~~~~iG~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (483)
...|.-....-+|.++.|.++-.. +-..+..+.+..++++.+...++|-.
T Consensus 470 tgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 999999999999999999887522 23344555566666666666666643
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=96.88 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=116.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccc
Q 011565 81 SLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVP 160 (483)
Q Consensus 81 ~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 160 (483)
+.+....|.+.+...+.-++...+..++.+|+|.|+.++++..++++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCccchhhHHhHH-HHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHH-HHHHhhcCCCC
Q 011565 161 VFTAEIAPKELRGALTSAN-QLLIVIGASTFFIIGT----VATWRTLALVGVIPCAV-LLLGLFLIPES 223 (483)
Q Consensus 161 ~~i~~~~~~~~rg~~~~~~-~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~-~~~~~~~~~e~ 223 (483)
.|+++.+|+|..+....+. +.+..+|..+.+.+++ ..|.+..|++.+.+.++ .++..+.++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9999999988877666653 5677777777666666 67899999887666655 44456666654
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=95.95 Aligned_cols=129 Identities=18% Similarity=0.211 Sum_probs=107.0
Q ss_pred ccccCcchHHHHhh-hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh--chhHHH
Q 011565 66 VGYSSPTQNAIRED-LSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE--GALSLD 142 (483)
Q Consensus 66 ~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 142 (483)
........+.+.++ +| ++...+++.....++..++.+++++++||+|+|+++..+..+.+++.++..+.+ |.+.++
T Consensus 241 ~~~~~~~~~y~~~~vl~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (428)
T PF13347_consen 241 FALMNTFLPYYFTYVLG-NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVL 319 (428)
T ss_pred hhhhhhHHHHHHHHHhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33344444545555 45 446788999999999999999999999999999999999999999999998886 999999
Q ss_pred HHHHHhhhcccccccccchhhhcccCc-------cchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 143 LGRLATGYGMGIFSYVVPVFTAEIAPK-------ELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
+.-++.|++.+...+...++++|..+. ++.|...+......-+|..+++.+.+
T Consensus 320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999863 23478888888888777777776554
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=91.35 Aligned_cols=149 Identities=23% Similarity=0.321 Sum_probs=122.4
Q ss_pred ccccccCcchHHHHhhhcCch--hHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhc--hh
Q 011565 64 TGVGYSSPTQNAIREDLSLSL--AEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEG--AL 139 (483)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~ 139 (483)
.+.....+..+.+..+++.+. .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+++++..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 455566667777888887666 58899999999999999999999999999999888888776777777777776 89
Q ss_pred HHHHHHHHhhhcccccccccchhhhcccCc-cchhhHHhHHHH-HHHHHHHHHHHhhc------cchhHHHHHHhHHHHH
Q 011565 140 SLDLGRLATGYGMGIFSYVVPVFTAEIAPK-ELRGALTSANQL-LIVIGASTFFIIGT------VATWRTLALVGVIPCA 211 (483)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~rg~~~~~~~~-~~~iG~~~~~~l~~------~~~wr~~f~~~~~~~~ 211 (483)
.+++.|+.+|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.++. ..+||+.|.+......
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999987 678888888877 57778788776655 1379986666555544
Q ss_pred H
Q 011565 212 V 212 (483)
Q Consensus 212 ~ 212 (483)
.
T Consensus 176 ~ 176 (338)
T COG0477 176 L 176 (338)
T ss_pred H
Confidence 3
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.4e-08 Score=92.52 Aligned_cols=133 Identities=14% Similarity=0.009 Sum_probs=99.8
Q ss_pred hhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcc
Q 011565 299 INAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLAL 375 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (483)
......+.|.+.+..+.+. +.....+.++..++.+..|++.||+|||+++..+..+..++.+++....
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~--------- 112 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA--------- 112 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3455666777766777775 4555666788889999999999999999999999999888886653211
Q ss_pred cccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 376 ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
...+...+....++.+.+.+...+....++.+..|++++....++.+....+|..++|.+++.+.
T Consensus 113 ~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 113 EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11345566666667777777777777777788766666666899999999999999998876543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=97.01 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=100.2
Q ss_pred hHHHHHHHcCCCC--chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHH
Q 011565 305 YAANIFQTAGLSP--STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALT 382 (483)
Q Consensus 305 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (483)
-++.+..+.|.+. .+......+...++.++.|+++|.+|||+.++.+.++..++.+..... .+...
T Consensus 66 ~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------~~~~~ 133 (599)
T PF06609_consen 66 ILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------QNMNT 133 (599)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------------CcHHH
Confidence 3455555556554 455666778888999999999999999999999999999998888764 45555
Q ss_pred HHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHH
Q 011565 383 LAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVF 461 (483)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 461 (483)
++....+.+.+. +........++|..|.+.|..+.++.....-.....+|.+...+.. .++.+.+++..+...++.+.
T Consensus 134 ~iag~~l~Gvga-G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 134 FIAGMVLYGVGA-GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 666666666653 3333445668999999999888777766555555566776655544 45556666655555444433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-07 Score=80.85 Aligned_cols=347 Identities=13% Similarity=0.011 Sum_probs=177.3
Q ss_pred HhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhh-----hhchhHHHHH-HHHHHHHHHH
Q 011565 57 SGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIAD-----FIGRKGAMRV-SSFVCIAGWL 130 (483)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~~~~-~~~~~~~~~~ 130 (483)
+.....+.-.+... .+|.+.+.=|+|.++.+...-++ --...-+.|.++.| |+||||.-++ +..+.+....
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~ml 114 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFML 114 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHH
Confidence 33455666677777 88888888888887765443221 11234578899999 9999987554 5555555444
Q ss_pred HHHHh-----------hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc---
Q 011565 131 AIYFS-----------EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV--- 196 (483)
Q Consensus 131 ~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~--- 196 (483)
+.+.- ++...+....++.-+..+.--.+.-.+.-....+++.|.+......+...|..++..+--.
T Consensus 115 lLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s 194 (510)
T KOG3574|consen 115 LLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALES 194 (510)
T ss_pred HHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecC
Confidence 44432 2333343344555555555555555666667788888998888888888888877654221
Q ss_pred --------chhH---------HHHHHhHHHHHHHHHH-hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHH
Q 011565 197 --------ATWR---------TLALVGVIPCAVLLLG-LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQ 258 (483)
Q Consensus 197 --------~~wr---------~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (483)
.+|. ...++.+.+.+++-.+ .++-+|.+... .+
T Consensus 195 ~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~-----~~------------------------ 245 (510)
T KOG3574|consen 195 PDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESV-----DE------------------------ 245 (510)
T ss_pred hhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhh-----hh------------------------
Confidence 1121 2233334444443333 33333322100 00
Q ss_pred HHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Q 011565 259 EYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIM 338 (483)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 338 (483)
+.+...+....-++++++-+..+.+.......-..+...-... +.-+-+.|.+....... .+..++..+..++.
T Consensus 246 -e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t----~LkLle~Gv~ke~Lal~-~v~~~plqI~l~~~ 319 (510)
T KOG3574|consen 246 -ELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALT----SLKLLEHGVPKEELALI-AVPLVPLQIALPLY 319 (510)
T ss_pred -hhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhcc----chHHHHcCCChhHheee-eeehhhHHHhhhhh
Confidence 0000011112245566666655544444333333222211111 22222346654332222 25555555555655
Q ss_pred HhhcC--Cccchh------hHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCC
Q 011565 339 IDRAG--RKPLLL------FAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP 410 (483)
Q Consensus 339 ~d~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 410 (483)
..|+. +|++.. .-.....+...+..........++.-+.......+....+...+....+....+..+++.+
T Consensus 320 ~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisd 399 (510)
T KOG3574|consen 320 IGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISD 399 (510)
T ss_pred heeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC
Confidence 55542 232211 1111111111122111111110000001111222222334444444444555678889999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 411 INIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 411 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
|...|+.+.+.|+..++|+---..+..++.|
T Consensus 400 p~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 400 PAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred cccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 9999999999999999998888888877766
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-08 Score=94.47 Aligned_cols=120 Identities=9% Similarity=0.045 Sum_probs=91.2
Q ss_pred HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH-----hhchhHHHHHHHHhhh
Q 011565 76 IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF-----SEGALSLDLGRLATGY 150 (483)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~ 150 (483)
+.+...-+.+..+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ ..+.+.+++.-++.|+
T Consensus 257 ~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~ 336 (473)
T PRK10429 257 YFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNI 336 (473)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 33333335666778888888899999999999999999999999888877766655433 3456777778888999
Q ss_pred cccccccccchhhhcccC-------ccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 151 GMGIFSYVVPVFTAEIAP-------KELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~-------~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
+.+...+...+++.|..+ +++.|..++......-+|..+++.+.+
T Consensus 337 ~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 337 GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999865 233366888888877777777766554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.3e-06 Score=80.49 Aligned_cols=123 Identities=6% Similarity=-0.053 Sum_probs=93.6
Q ss_pred hHHHHhhhcC-----chhHHHHHHHHHHHHHHHH-HHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHh----h------
Q 011565 73 QNAIREDLSL-----SLAEYSVFGSILTFGAMIG-AITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS----E------ 136 (483)
Q Consensus 73 ~~~i~~~~~~-----s~~~~~~~~s~~~l~~~~~-~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~------ 136 (483)
+-++++.+.+ +.+.+.++-+...+..++. .++.+++++|++|++++-+....+....+++++. +
T Consensus 26 LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~ 105 (472)
T TIGR00769 26 LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPT 105 (472)
T ss_pred HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCc
Confidence 3446777765 3367899999888877777 8999999999999999988777777766666654 1
Q ss_pred ---------------------chhHHHHHHHHhhhccccccc-ccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhh
Q 011565 137 ---------------------GALSLDLGRLATGYGMGIFSY-VVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG 194 (483)
Q Consensus 137 ---------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~ 194 (483)
+.|...+..+...+-...... .-..+..|.++.+|-.|..++.+.+.++|.++++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 106 ALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133333444455555445554 6788999999999999999999999999999999776
Q ss_pred c
Q 011565 195 T 195 (483)
Q Consensus 195 ~ 195 (483)
.
T Consensus 186 ~ 186 (472)
T TIGR00769 186 K 186 (472)
T ss_pred H
Confidence 5
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=69.02 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=73.5
Q ss_pred cccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHH
Q 011565 63 GTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSL 141 (483)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (483)
+.....++|.+|.+++|.++|.++.||+.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.++++..
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 4556678899999999999999999999999999999999999999999999999999999999999999999988765
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-07 Score=83.50 Aligned_cols=132 Identities=16% Similarity=0.032 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcc
Q 011565 87 YSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEI 166 (483)
Q Consensus 87 ~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 166 (483)
.+.+.-+-.+...+..+.+.+..+|+..+.=..+..++..++.++.+++++.+.=+++-++.+++.|........+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 344566666677777888889999988666666677788889999999999999899999999999988888877654 5
Q ss_pred cCccchhhHHhHHHHHHHHHHHHHHHhhc-----cchhHHHHHHhHHHHHHHHH-HhhcCCCC
Q 011565 167 APKELRGALTSANQLLIVIGASTFFIIGT-----VATWRTLALVGVIPCAVLLL-GLFLIPES 223 (483)
Q Consensus 167 ~~~~~rg~~~~~~~~~~~iG~~~~~~l~~-----~~~wr~~f~~~~~~~~~~~~-~~~~~~e~ 223 (483)
+++ ...+.+..+.+.+.++|+..-. .++-|..+.+...+.++..+ .++.+|.+
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 554 3456666666666666654322 23447777776655554443 34555543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=93.00 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=112.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcc
Q 011565 317 PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSG 396 (483)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (483)
......++.++.++|.++.|+++||+|||+++.++.++..++.+..++. .+.....+.-++.|++..+
T Consensus 120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHHHHHHHhhccc
Confidence 3456677788999999999999999999999999999998888777765 6788888888999999999
Q ss_pred cccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccCC
Q 011565 397 MGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
...+...+..|.++++.|+.+..+ ......++.+++...+++.. ++...+++......+..++ +++.+|.
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 999999999999999999999999 88888888889988888776 4455555555555544443 4444453
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.3e-08 Score=82.64 Aligned_cols=144 Identities=16% Similarity=0.070 Sum_probs=106.3
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHH-HHHHHHHHHHhhchhHHHHHHHHhhhccc
Q 011565 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFV-CIAGWLAIYFSEGALSLDLGRLATGYGMG 153 (483)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 153 (483)
..++.||+|+...+.+.+.-..-.++.+++.|.++||+|++...+.+..+ +.++-....| +++.=..+..+.|+...
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 57899999999999999999999999999999999999999887765544 3333333333 23333456677888776
Q ss_pred ccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhcc-------chhHHHHHH-hHHHHHHHHHHhhcC
Q 011565 154 IFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTV-------ATWRTLALV-GVIPCAVLLLGLFLI 220 (483)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~-------~~wr~~f~~-~~~~~~~~~~~~~~~ 220 (483)
.........+....|+++.|.+.+..+...++|-.+.|++++. ..|--.|.+ .+.+++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 6555566777888899999999999999999999999988872 345555554 444455544444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=90.65 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH--hhchhHHHHHHHHhhhcccccccccch
Q 011565 84 LAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF--SEGALSLDLGRLATGYGMGIFSYVVPV 161 (483)
Q Consensus 84 ~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (483)
++..+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777888889999999999999999999888766654443333 346777888889999999999999999
Q ss_pred hhhcccCc-------cchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 162 FTAEIAPK-------ELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 162 ~i~~~~~~-------~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
+++|..+. ++.|...+.......+|..+|+.+++
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998752 22356777777777777777776655
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8e-07 Score=78.25 Aligned_cols=364 Identities=11% Similarity=0.106 Sum_probs=203.9
Q ss_pred hhhcCchhHH-HHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccc
Q 011565 78 EDLSLSLAEY-SVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFS 156 (483)
Q Consensus 78 ~~~~~s~~~~-~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 156 (483)
.+.+++..|. .-+.-...-.+.+.-.+.=.+.|-.-.|++++.-.+.....-.+..+.++.+.+=+.-++.|...+ ..
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE 112 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE 112 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence 3445666554 234445555677777777789999989999988777777778888899999999999999999875 56
Q ss_pred cccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhh
Q 011565 157 YVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKI 230 (483)
Q Consensus 157 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 230 (483)
.+-++++-+..+++++.++.+....+.-.|...|..++. ..+++..-.+......+..+...++|..++...-+
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 788899999999999999998887777777776666654 33455555565555556666677888776543322
Q ss_pred CCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHH
Q 011565 231 GKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIF 310 (483)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (483)
.+.++.. ..+.+..+. ..+.. +........-..++.+..++|....-.+- +.....+++....|.+..-
T Consensus 193 ~~~~~~~--v~~~e~~~~--~~~~~---~~l~~~~~~l~~~l~~~y~np~ll~WSlW----wAl~scg~~QV~nY~Q~LW 261 (433)
T KOG3810|consen 193 RLEDKIS--VGDLEEMNP--QASYM---SYLRGAFVLLWRDLQECYSNPRLLKWSLW----WALASCGYYQVTNYTQILW 261 (433)
T ss_pred cccccce--eccchhcCc--cchhh---HHHHHHHHHHHHHHHHHhcCchhhhhHHH----HHHhhchhHHHHHHHHHHH
Confidence 2222110 000000000 00000 00001111123345556666654332222 2222234455666766666
Q ss_pred HHcCC-CC----chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHH
Q 011565 311 QTAGL-SP----STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAG 385 (483)
Q Consensus 311 ~~~~~-~~----~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (483)
+...- +. +..-.+..+.+.++.+..|++.-...|..-+.++......+.+++... ...+.+....
T Consensus 262 ~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~----------~t~~Iw~~Ya 331 (433)
T KOG3810|consen 262 KEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA----------QTQHIWVCYA 331 (433)
T ss_pred HhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh----------cccceehhhh
Confidence 55422 21 233344456667777888887655555433322222222222222221 1234445555
Q ss_pred HHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHH----HHHHh-----hhhhHHHHHHHHHHH
Q 011565 386 VLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTF----NFLET-----WSSYGTFLLYAAVNI 456 (483)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~----g~~~~-----~~~~~~~~~~~~~~~ 456 (483)
..++.........++....+++....+.-|...|+..++.-+-..+-..+. |.-.+ .-+..-|.+++++.+
T Consensus 332 ~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~ 411 (433)
T KOG3810|consen 332 GYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFL 411 (433)
T ss_pred hHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHH
Confidence 555544444444445545555555667778999988887766555544332 11111 012334556666666
Q ss_pred HHHHHHH
Q 011565 457 LGIVFIT 463 (483)
Q Consensus 457 ~~~~~~~ 463 (483)
+.....+
T Consensus 412 ~~~~~~~ 418 (433)
T KOG3810|consen 412 IGFGIEY 418 (433)
T ss_pred HHHHHHH
Confidence 6654433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.1e-07 Score=87.94 Aligned_cols=183 Identities=13% Similarity=0.092 Sum_probs=109.1
Q ss_pred HHHhhhhhhccchhhhHHhHHHHHHHcCCCCchH---HHHHHHHHHHHHHHHHHHHh----hcCCccchhhH-hHHHHHH
Q 011565 287 GVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTG---TISYALLQVVVTFFNIIMID----RAGRKPLLLFA-ATGLLLG 358 (483)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~ 358 (483)
........++. +.....+.+.+++..|.+.... .....+.+++..++.|+++| |+|||+.+... .....++
T Consensus 9 ~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 9 VASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 33333333333 3344445555667778876444 44456677788899999999 59999988764 4444444
Q ss_pred HHHHHHHHHHHh-cC--Ccccccch--HHHHHHHHHHHHhhcccccchhhhccccCCCccc--hhhhHHHHHHHHHHHHH
Q 011565 359 CLLLAAAFFLKT-YG--LALESVPA--LTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIK--GVGGSLTTLVNWFGAWA 431 (483)
Q Consensus 359 ~~~~~~~~~~~~-~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~ 431 (483)
+.++........ .. ........ +..+....+..+......+...+++.|..|+++| +.+.++.+....+|+++
T Consensus 88 l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il 167 (477)
T TIGR01301 88 VILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL 167 (477)
T ss_pred HHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 444443211000 00 00000011 1222222233334444555667899999998765 67999999999999999
Q ss_pred HHHHHHHHH--hh--------------hhhHHHHHHHHHHHHHHHHHHhcccCCC
Q 011565 432 ISYTFNFLE--TW--------------SSYGTFLLYAAVNILGIVFITTVVPETK 470 (483)
Q Consensus 432 ~~~~~g~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (483)
++.+.+... +. +....|.+.+++.+++.++..+..+|..
T Consensus 168 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 168 GYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 999887652 11 3345666767777777777777777753
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=92.10 Aligned_cols=145 Identities=11% Similarity=0.029 Sum_probs=115.3
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH----------hhchhHHHHHHHH
Q 011565 78 EDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF----------SEGALSLDLGRLA 147 (483)
Q Consensus 78 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l 147 (483)
+++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 578999999999999999999999999999999999999999999999988866431 1344456677788
Q ss_pred hhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cch-------hHHHHHH-hHHHHHHHHH
Q 011565 148 TGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VAT-------WRTLALV-GVIPCAVLLL 215 (483)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~-------wr~~f~~-~~~~~~~~~~ 215 (483)
.+++.+..+.....++.+..|++++|...++.....++|..+++.+++ ..| .++...+ ..+..++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999888887665 223 2333333 3333444444
Q ss_pred HhhcCCC
Q 011565 216 GLFLIPE 222 (483)
Q Consensus 216 ~~~~~~e 222 (483)
..+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 4557885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-06 Score=85.79 Aligned_cols=151 Identities=14% Similarity=0.029 Sum_probs=117.4
Q ss_pred cccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-chhHHHHHHHHHHHHHHHHHHHhhc--------
Q 011565 67 GYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI-GRKGAMRVSSFVCIAGWLAIYFSEG-------- 137 (483)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~-------- 137 (483)
+.....+..+.+++|.+...+.-..+.+.-......+..++++|-| ||-+++.++.++..++.++..++..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 3356677788999999988888999999999999999999999975 8889999999888888666544321
Q ss_pred -----------------hhHHHHHHHHhhhcccccccccchhhhcccC---ccch---hhHHhHHHHHHHHHHHHHHHhh
Q 011565 138 -----------------ALSLDLGRLATGYGMGIFSYVVPVFTAEIAP---KELR---GALTSANQLLIVIGASTFFIIG 194 (483)
Q Consensus 138 -----------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~r---g~~~~~~~~~~~iG~~~~~~l~ 194 (483)
...+..+.-+..+|.|+.-|...+.-+|-++ ++++ ...+.++....++|..++..+.
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 1246667778888999999999999999998 3222 3677888888888888876554
Q ss_pred c----cchhHHHHHHhHHHHHHHHHHh
Q 011565 195 T----VATWRTLALVGVIPCAVLLLGL 217 (483)
Q Consensus 195 ~----~~~wr~~f~~~~~~~~~~~~~~ 217 (483)
. ..+|.+.|.+..+..+++++++
T Consensus 215 vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 215 VYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HhhhhcccceeeccHHHHHHHHHHHHH
Confidence 3 5789999988776666655443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.4e-07 Score=77.63 Aligned_cols=167 Identities=17% Similarity=0.112 Sum_probs=107.8
Q ss_pred hhhccchhhhHHhHHHHHHHcCCCCchHHHHH---HHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHH
Q 011565 293 IQQFGGINAIAFYAANIFQTAGLSPSTGTISY---ALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLK 369 (483)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (483)
....+..+.++.|.+++.+..+.+......+. .++..+ .+..|.+.|+.|++.++.++.....++...+.......
T Consensus 12 ~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~ 90 (250)
T PF06813_consen 12 QLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR 90 (250)
T ss_pred HHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34444567889999999998898875544443 445444 48889999999999999999999999988777653111
Q ss_pred hcCCcccccchHHHHHHHHHHHHhhccc-ccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 011565 370 TYGLALESVPALTLAGVLVYIGSFSSGM-GATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGTF 448 (483)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 448 (483)
.+..+.+.+..... .+..+..+ .........+.+| ++||++.|+.-....+++.+-..+...+.+.+....+
T Consensus 91 -----i~~~~~~~~~~~~~-l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fl 163 (250)
T PF06813_consen 91 -----IPSLPVWLMCLFLF-LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFL 163 (250)
T ss_pred -----cCccchHHHHHHHH-HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHH
Confidence 11123333333333 33333333 3333444557788 6899999999999999998888877777664433344
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 011565 449 LLYAAVNILGIVFITTVVP 467 (483)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~ 467 (483)
.+.+....+..+....+.+
T Consensus 164 l~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 164 LFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHHHHhhhee
Confidence 4444444444444434443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-06 Score=77.82 Aligned_cols=170 Identities=15% Similarity=0.076 Sum_probs=128.3
Q ss_pred cCchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-chhHHHHH
Q 011565 42 KDSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFI-GRKGAMRV 120 (483)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~ 120 (483)
-++++..|.+.+.+.+.++.+.. ...-+|.|..|-|+|..+.|++.+...+.....++....+.+|. .+|+..+.
T Consensus 204 vw~~~~aW~vtLfmGlqS~~~Y~----~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~ 279 (395)
T COG2807 204 VWRSPLAWQVTLFMGLQSLLYYI----VIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVL 279 (395)
T ss_pred cccCchhHHHHHHHHhhHHHHHH----HHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 34555567666666555555443 33347789999999999999999999999999999999999965 67888888
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCccch-hhHHhHHHHHHHHHHHHHHHhhc----
Q 011565 121 SSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELR-GALTSANQLLIVIGASTFFIIGT---- 195 (483)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r-g~~~~~~~~~~~iG~~~~~~l~~---- 195 (483)
..+++.++...+.+.+....+.. -++.|+|.|..++.+...+.+..+..++ ++..++.+....+=..+||++.+
T Consensus 280 ~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 280 ALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 88888899888888875544444 4999999999999999999998855443 45555555555555666777777
Q ss_pred -cchhHHHHHHhHHHHHHHHHH
Q 011565 196 -VATWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 196 -~~~wr~~f~~~~~~~~~~~~~ 216 (483)
.-+|+...+..+...+...+.
T Consensus 359 a~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 359 ATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred hcCChHHHHHHHHHHHHHHHHH
Confidence 347998888766666655444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=79.42 Aligned_cols=128 Identities=13% Similarity=-0.010 Sum_probs=99.7
Q ss_pred hHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchH
Q 011565 305 YAANIFQTAGLS---PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPAL 381 (483)
Q Consensus 305 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (483)
..|...+....+ ++.....+..+..+.++..+++.+|+|.|+.+..++.++++++.++.... ....+.
T Consensus 35 Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa---------~~~~y~ 105 (422)
T COG0738 35 LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA---------SSKSYG 105 (422)
T ss_pred hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh---------hhhhHH
Confidence 334443333444 56667777888889999999999999999999999999999999887542 223455
Q ss_pred HHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 382 TLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
...+.+.+.+.+.+......+.++..+.|++....-+.+.+.++.+|.+++|.+++.+..
T Consensus 106 ~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 106 FFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555555666666666666777888899898888999999999999999999999988765
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-07 Score=87.08 Aligned_cols=141 Identities=11% Similarity=0.005 Sum_probs=120.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhccc
Q 011565 318 STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGM 397 (483)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (483)
+........+.+++.+.++++.||+|-|+++..+.++.+++.++...... ...+.+++.-++.|...+..
T Consensus 76 ~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----------~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 76 GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----------IGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------hcchhhHHHHHHhHHHHhHH
Confidence 45566678899999999999999999999999999999988888887632 23336677778888888888
Q ss_pred ccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHhcccC
Q 011565 398 GATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET--WSSYGTFLLYAAVNILGIVFITTVVPE 468 (483)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (483)
.|....+..+-.|+++|++..++.....++|.+++-++.|++-+ .|+...|++.+++.++..++.+++..+
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999988 588889999998888887776666544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.5e-06 Score=78.57 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=92.9
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHhhhcccccc
Q 011565 79 DLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE--GALSLDLGRLATGYGMGIFS 156 (483)
Q Consensus 79 ~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~ 156 (483)
-+|.++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+ +.+.+++..++.++|.+...
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~ 345 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIAN 345 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccc
Confidence 3455666677788888888888899999999999999999999999999999998876 78888999999999999999
Q ss_pred cccchhhhcccCcc-------chhhHHhHHHHHHHHHHHHHHHh
Q 011565 157 YVVPVFTAEIAPKE-------LRGALTSANQLLIVIGASTFFII 193 (483)
Q Consensus 157 ~~~~~~i~~~~~~~-------~rg~~~~~~~~~~~iG~~~~~~l 193 (483)
+...++++|..+-+ .-|...+......=+|..++..+
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999877522 12666666666655555555543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.3e-07 Score=76.40 Aligned_cols=312 Identities=13% Similarity=0.061 Sum_probs=162.6
Q ss_pred cCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q 011565 69 SSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLAT 148 (483)
Q Consensus 69 ~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (483)
-.|..-.+-++++....++|.+.-..+-..++...+.|.++||-|||+.-+.-.+.+.+++ +.-.++.+-.++++|++-
T Consensus 56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LG 134 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLG 134 (454)
T ss_pred cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhh
Confidence 3455555778889999999998888888888999999999999999997655444443332 234567899999999999
Q ss_pred hhcccccccccchh-hhcccCccchhhHHhH------------HHHHHHHHHHHHHHhhc--cchhHHHHHHhHHHHHHH
Q 011565 149 GYGMGIFSYVVPVF-TAEIAPKELRGALTSA------------NQLLIVIGASTFFIIGT--VATWRTLALVGVIPCAVL 213 (483)
Q Consensus 149 G~~~g~~~~~~~~~-i~~~~~~~~rg~~~~~------------~~~~~~iG~~~~~~l~~--~~~wr~~f~~~~~~~~~~ 213 (483)
|+..+..+..--++ +.|.- ++|+.-.-+ ......+..+.|-.+.. .+|--.+|-..+.+..+.
T Consensus 135 GiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig 212 (454)
T KOG4332|consen 135 GIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG 212 (454)
T ss_pred hHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 99998887776554 45554 233321111 11222222333333332 223445555444333332
Q ss_pred HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhh
Q 011565 214 LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVI 293 (483)
Q Consensus 214 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (483)
..+.+- .|-..-++..+.++.+... +...+.+.++++ ..+...+...
T Consensus 213 mAvil~-----~W~ENygdps~~kdlltqf-------------------------~gaa~aiaSD~k---i~LLG~iqsL 259 (454)
T KOG4332|consen 213 MAVILS-----SWSENYGDPSENKDLLTQF-------------------------KGAARAIASDEK---IALLGAIQSL 259 (454)
T ss_pred HHHHHh-----hhhhccCChhhhHHHHHHh-------------------------hHhHHHHhcchH---HHHHHHHHHH
Confidence 221110 1111111211111111111 111222333332 2222333333
Q ss_pred hhccchhhhHHhHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCc--cchhhHhHHHHHHHHHHHHHHHHHh
Q 011565 294 QQFGGINAIAFYAANIFQ-TAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRK--PLLLFAATGLLLGCLLLAAAFFLKT 370 (483)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (483)
.....+.....|.|..-- ..+...+.+...+.+..+.|+-+..++..|-..| ..+.+.++...+.+.+...... ..
T Consensus 260 FE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-vs 338 (454)
T KOG4332|consen 260 FEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-VS 338 (454)
T ss_pred HhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-cC
Confidence 333334444445554421 2234446666667777777777776766554333 2333444433333332222211 11
Q ss_pred cCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHH
Q 011565 371 YGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLT 421 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 421 (483)
+ ....+...++.+ +..-...+.++|...-+-++..|.+.|++.+-..
T Consensus 339 P---~kes~~~s~i~F-~~~E~cvGlfwPSimkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 339 P---SKESPSESLIGF-CLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred C---CcCCchHHHHHH-HHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence 1 122333334443 3444555677788878888889998887755443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7e-07 Score=88.16 Aligned_cols=138 Identities=25% Similarity=0.187 Sum_probs=109.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhccc
Q 011565 318 STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGM 397 (483)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (483)
+.......++..++.++.|+++|++|||+.+..+.+...++.++.... .+...+.+.-++.|.+.++.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a------------~~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA------------PSWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHhccchhhh
Confidence 466777788999999999999999999999999999999999999886 46777888888888888888
Q ss_pred ccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-h--hhhHHHHHHHHHHHHHHHHHHhcccCC
Q 011565 398 GATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-W--SSYGTFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
..+...+.+|..|++.||...+..+....+|..++ .+.+.... . ++...+.+..+.+++..+. .++.||+
T Consensus 160 ~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 160 SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 88888999999999999999999999999888888 44455444 2 3444444444444444444 6666654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=85.69 Aligned_cols=161 Identities=18% Similarity=0.167 Sum_probs=109.8
Q ss_pred hhhccchhhhHHhHHHHHHH-cCCCCchHHHHHHH---HHHHHHHHHHHHHhh-cCCccchhhHhHHHHHHHHHHHHHHH
Q 011565 293 IQQFGGINAIAFYAANIFQT-AGLSPSTGTISYAL---LQVVVTFFNIIMIDR-AGRKPLLLFAATGLLLGCLLLAAAFF 367 (483)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (483)
+.+++.-..+.+|+....++ .|++.......++. ..-...+++||++|| +|+|+++..+.+++.++.+++...
T Consensus 35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~-- 112 (498)
T COG3104 35 FSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS-- 112 (498)
T ss_pred HhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc--
Confidence 44444444455555544431 23555444444433 333677899999999 599999999999999999988863
Q ss_pred HHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCC--ccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhh
Q 011565 368 LKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPI--NIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSS 444 (483)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~ 444 (483)
.......+.+.+.++..+.+..=+...++..|++|+ .+|-.+.++.++..++|+.++|.+.+++.+ .++
T Consensus 113 --------~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~ 184 (498)
T COG3104 113 --------SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGW 184 (498)
T ss_pred --------ccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCH
Confidence 112344556666666677777778888999999975 346778888899999999999999999998 454
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 011565 445 YGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~ 463 (483)
...|...++-..++.+..+
T Consensus 185 ~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 185 HVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-07 Score=85.06 Aligned_cols=172 Identities=16% Similarity=0.039 Sum_probs=126.0
Q ss_pred HHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHH----HHH-----HHHHHHHHHHHhHHHhhhhhchhHHHHH
Q 011565 50 LSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSV----FGS-----ILTFGAMIGAITSGPIADFIGRKGAMRV 120 (483)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~----~~s-----~~~l~~~~~~~~~G~l~dr~Grr~~~~~ 120 (483)
..+...+..+|+.-......+.....|.+++|+.+.+... -.+ +-..++..+-.+...+.|+.|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4455667777777777777777788888888876544322 111 1222333455667789999999999999
Q ss_pred HHHHHHHHHHHHHHhhc--------hhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHH
Q 011565 121 SSFVCIAGWLAIYFSEG--------ALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFI 192 (483)
Q Consensus 121 ~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~ 192 (483)
+.+++++..+..+...| .....+..++.-+| .......+-+|.+|.+-|+..-++.....-.|+++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999988776 11223333333343 33455667789999999999999999988888888875
Q ss_pred hhc---------cchhHHHHHHhHHHHHHHHHHhhcCCCCh
Q 011565 193 IGT---------VATWRTLALVGVIPCAVLLLGLFLIPESP 224 (483)
Q Consensus 193 l~~---------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (483)
.-. ..+-|+.+++.+...++..+.-+++||+.
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 533 45789999999999999999988899984
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=77.61 Aligned_cols=141 Identities=13% Similarity=0.184 Sum_probs=116.3
Q ss_pred HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhh-hhchhHHHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHhhhc
Q 011565 76 IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIAD-FIGRKGAMRVSSFVCIAGWLAIYF---SEGALSLDLGRLATGYG 151 (483)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~d-r~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~ 151 (483)
=.+-||+|..|...+...+..|..++....|++.. |.++|+.-.+++.+..++..+..+ ..+.+.+...-++.|++
T Consensus 235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g 314 (403)
T PF03209_consen 235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG 314 (403)
T ss_pred hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 44568999999999999999999999999998888 678888877888877776666544 45788999999999999
Q ss_pred ccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc--------------cchhHHHHHHhHHHHHHHHHH
Q 011565 152 MGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT--------------VATWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~--------------~~~wr~~f~~~~~~~~~~~~~ 216 (483)
.|.......+...|..++++.|..+|.+.....++..++..+++ ..+|-.+|.+-++..++++.+
T Consensus 315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888777766 124667777766666555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7e-07 Score=85.78 Aligned_cols=143 Identities=12% Similarity=0.007 Sum_probs=112.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcc
Q 011565 317 PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSG 396 (483)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (483)
-+.....+.++.+++.+.++++.||++-.+.+....+...+..++.... .+...+++.-++.|.+.++
T Consensus 83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------------~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------------HSFPGLIALRFLLGLFESG 150 (495)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHhcc
Confidence 3566778889999999999999999995444433333222222122211 4567788888999999999
Q ss_pred cccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccCC
Q 011565 397 MGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-------WSSYGTFLLYAAVNILGIVFITTVVPET 469 (483)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
.+|....++..-+.+++|+..+|+.+....+|+++|+.+...+.+ .++.+.|++-+++.++.++++++++|+.
T Consensus 151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred cchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence 999999999999999999999999999999999999999887532 5678889999999999998888888764
Q ss_pred CC
Q 011565 470 KG 471 (483)
Q Consensus 470 ~~ 471 (483)
..
T Consensus 231 P~ 232 (495)
T KOG2533|consen 231 PS 232 (495)
T ss_pred hh
Confidence 33
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-09 Score=104.94 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=96.6
Q ss_pred hHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHH--H--hh------chhHHH
Q 011565 73 QNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY--F--SE------GALSLD 142 (483)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~------~~~~l~ 142 (483)
.+.+.++.+.++. -+......+...++.+....+.||+|||++++.+..+.+++.+..+ . .+ +...+.
T Consensus 276 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 353 (451)
T PF00083_consen 276 SPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIV 353 (451)
T ss_pred ccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence 4457777777766 2222333445556677777999999999999999998888877775 1 11 122222
Q ss_pred HHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHH-HHHHh
Q 011565 143 LGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAV-LLLGL 217 (483)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~-~~~~~ 217 (483)
...........+..+....+..|.+|.+.|++..++......++..+++.+.. ..+-...+.+.+..+++ .++.+
T Consensus 354 ~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~ 433 (451)
T PF00083_consen 354 FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVY 433 (451)
T ss_pred eeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhee
Confidence 22222112222345667788899999999999999998888888877776654 22313344444444444 55568
Q ss_pred hcCCCCh
Q 011565 218 FLIPESP 224 (483)
Q Consensus 218 ~~~~e~p 224 (483)
+++||+.
T Consensus 434 ~~lpET~ 440 (451)
T PF00083_consen 434 FFLPETK 440 (451)
T ss_pred EEEeeCC
Confidence 8999984
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-07 Score=87.62 Aligned_cols=145 Identities=16% Similarity=0.069 Sum_probs=122.9
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhccc
Q 011565 74 NAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMG 153 (483)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 153 (483)
---.||++..+...|........+-++.-++.+++..|+|+-+++..++....+=.+..+..+|.|..+...+++|+..+
T Consensus 395 fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~a 474 (618)
T KOG3762|consen 395 FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHA 474 (618)
T ss_pred HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHH
Confidence 33467888788888988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcccCccchhhHHhHHHH-----HHHHHHHHHHHhhccchhHHHHHHhHHHHHHHHHHhh
Q 011565 154 IFSYVVPVFTAEIAPKELRGALTSANQL-----LIVIGASTFFIIGTVATWRTLALVGVIPCAVLLLGLF 218 (483)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~-----~~~iG~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 218 (483)
..+.+..+|++...||+-|..+.++.+. +-++|+++|..+...++=|..|.+.++.+++.++...
T Consensus 475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888876643 3455555555555577889999888887777554433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-05 Score=78.28 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=72.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHhhhcccccccccc
Q 011565 83 SLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE--GALSLDLGRLATGYGMGIFSYVVP 160 (483)
Q Consensus 83 s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~ 160 (483)
++...+++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +.+.+++.-++.|++.+...+...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888899999999999999999999988765555444444433332 233344555667887777676667
Q ss_pred hhhhcccC-------ccchhhHHhHHHHHHHHHHHHHHHhh
Q 011565 161 VFTAEIAP-------KELRGALTSANQLLIVIGASTFFIIG 194 (483)
Q Consensus 161 ~~i~~~~~-------~~~rg~~~~~~~~~~~iG~~~~~~l~ 194 (483)
+++.|..+ +++-|...+......-+|..+++.++
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765 22225555665555555555555443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.1e-06 Score=66.35 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccC
Q 011565 89 VFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAP 168 (483)
Q Consensus 89 ~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 168 (483)
.-.++......+++++.+.+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-++.|++.+..+.....++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 3456666777888889999999999999999999998854444 356788899999999999999999999999999999
Q ss_pred ccchhhHHhHHHHHHHHHHHHHHHhh
Q 011565 169 KELRGALTSANQLLIVIGASTFFIIG 194 (483)
Q Consensus 169 ~~~rg~~~~~~~~~~~iG~~~~~~l~ 194 (483)
+++|++..++.......+.++|.++.
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888777776654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=60.32 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=56.6
Q ss_pred hhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHH
Q 011565 60 YSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVC 125 (483)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 125 (483)
+......+...|.+|...++.|+|+.|+|.+.++..+...++.+++|.++||+|+++..+....++
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 334445666788888888999999999999999999999999999999999999998887766543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=76.37 Aligned_cols=136 Identities=20% Similarity=0.155 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhh
Q 011565 324 YALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWV 403 (483)
Q Consensus 324 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (483)
.++..++.+...|.++||+|||..+........+...++.+. .++.++ ..-..++.........+
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------------~~~~~~--~~~l~g~~~~~~s~~~a 135 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------------GYWFFL--LLGLSGGFSAIFSVGFA 135 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------------HHHHhh--hcccccchhhhhhhhhh
Confidence 367778889999999999999999988887777776666653 222222 22222333344566678
Q ss_pred hccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCH
Q 011565 404 LMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVPETKGRTL 474 (483)
Q Consensus 404 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (483)
++++....+.|....|+.+.....+..++|.+.+.+.+ .+....+.+..+..++..+....++||+..++.
T Consensus 136 ~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 136 YVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred heeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 99999999999999999999999999999999999888 677777888888888888888888888654443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00011 Score=67.60 Aligned_cols=346 Identities=10% Similarity=0.016 Sum_probs=149.7
Q ss_pred hcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHH---HHHHHHHh---
Q 011565 62 FGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIA---GWLAIYFS--- 135 (483)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~---~~~~~~~~--- 135 (483)
.-....++....+...+++-.++. .....+.+.+...+..++...+--+...|....++..+..+ ....+.++
T Consensus 30 ~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~ 108 (406)
T KOG1479|consen 30 TLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLALVK 108 (406)
T ss_pred cccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455566666777777654433 33334444444444444444443333322222222222111 11222222
Q ss_pred ------hchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHH---hhc--cchhHHHHH
Q 011565 136 ------EGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFI---IGT--VATWRTLAL 204 (483)
Q Consensus 136 ------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~---l~~--~~~wr~~f~ 204 (483)
..++..++.-.+.+.+.|......+...++ +|+|.-...++-.+.+..+-.++--. ... ..+=..-|.
T Consensus 109 ~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~ 187 (406)
T KOG1479|consen 109 TDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFI 187 (406)
T ss_pred cCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHH
Confidence 245666777888888888887777776666 46665444333333322222222111 111 112223455
Q ss_pred HhHHHHHHHHHHhhcCCCChhHH--HhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcc
Q 011565 205 VGVIPCAVLLLGLFLIPESPRWL--AKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLH 282 (483)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (483)
+..+..+++++.+..+|+.|-.. .+++..++.+ .+....+ + +...+....+.++++++- +
T Consensus 188 ~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~-----l~~~~~~---~--------~~~~~~~~~~~~~i~~k~--~ 249 (406)
T KOG1479|consen 188 TSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSK-----LAAEGIE---S--------DSSLSNEDDSLWDIFKKI--K 249 (406)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHhhhccccccc-----ccccccc---c--------ccccccccchHHHHHHHH--H
Confidence 56666666777766777766322 2222111110 0000000 0 000011111445555432 1
Q ss_pred hHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHH-HHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHH
Q 011565 283 SVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTIS-YALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLG 358 (483)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 358 (483)
......++.+++ ....+|-+..........+. ...... +.+...+|.+...++-++ +||.+. +...+-.+.
T Consensus 250 ~~~~~i~lvy~V---TLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~-i~v~lR~lf 324 (406)
T KOG1479|consen 250 DLAFNIFLVYFV---TLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP-DPRKLT-IPVLLRLLF 324 (406)
T ss_pred HHhhchheeeee---eeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC-CCceeh-HHHHHHHHH
Confidence 222222332222 23344555444332221111 112222 455666665554444333 233333 222222221
Q ss_pred HHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHH
Q 011565 359 CLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYT 435 (483)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 435 (483)
.-++....+.. .+....+.++.+....+.+...+-.......++.+.+|++++..+-.+....-..|-..|..+
T Consensus 325 iPlF~~cn~~~---~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 325 IPLFLLCNYPP---LPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred HHHHHHhccCC---CCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 11111110000 001112334455555555665555566778888888888877666666666555565555544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.7e-05 Score=70.93 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---c------hhHHHHHHHHhhhcccccccccchhhhcccCcc---chhhHHhHHHHHH
Q 011565 116 GAMRVSSFVCIAGWLAIYFSE---G------ALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKE---LRGALTSANQLLI 183 (483)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~ 183 (483)
|+++++.+++.+|.++..++. + .+.+.++-++.++|.|+.-|...++.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888899999999855543 2 257899999999999999999999999999765 4567888999999
Q ss_pred HHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhcC
Q 011565 184 VIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFLI 220 (483)
Q Consensus 184 ~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (483)
++|..++..+.. ..+|.+.|.+.++..+++++.++.-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999987766 5789999999888877766654443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00015 Score=67.92 Aligned_cols=137 Identities=13% Similarity=0.089 Sum_probs=77.0
Q ss_pred HHHhhhhhcccccccCcchHHHHhh--hcCchhHHHHHHHHHHHHHHHHHHhHHHhhh-----hhchhHHHHH-HHHHHH
Q 011565 55 AVSGSYSFGTGVGYSSPTQNAIRED--LSLSLAEYSVFGSILTFGAMIGAITSGPIAD-----FIGRKGAMRV-SSFVCI 126 (483)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~~~~-~~~~~~ 126 (483)
+.+.++..+.-.+.....+|.+.++ -++|.+|.+...-+ ..-+. .-++|.++.| |+||||.-++ .-.+.+
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g 82 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG 82 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence 4445667777777776778888888 67888887644211 11111 2355666666 8999997654 333333
Q ss_pred HHHHHHHHhh----------------------ch--hHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHH
Q 011565 127 AGWLAIYFSE----------------------GA--LSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLL 182 (483)
Q Consensus 127 ~~~~~~~~~~----------------------~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~ 182 (483)
+..+..+..- ++ ..+...-++.=+-.+.--.+.-.+.-....+++++.+......+
T Consensus 83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG 162 (544)
T PF13000_consen 83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVG 162 (544)
T ss_pred HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhH
Confidence 3333332211 01 11222222222222222333444555566788889988888888
Q ss_pred HHHHHHHHHHh
Q 011565 183 IVIGASTFFII 193 (483)
Q Consensus 183 ~~iG~~~~~~l 193 (483)
.++|..++..+
T Consensus 163 ~~~Gyfls~tv 173 (544)
T PF13000_consen 163 QTAGYFLSFTV 173 (544)
T ss_pred hhhhHHHHHHH
Confidence 88888776544
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.2e-05 Score=72.93 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHH
Q 011565 381 LTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYT 435 (483)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 435 (483)
+..++..++.+...+-.......+..+..++++|..+..+...+-.+|-.+|..+
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555556667788888888999888888888888888887765
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00046 Score=62.43 Aligned_cols=155 Identities=22% Similarity=0.142 Sum_probs=92.9
Q ss_pred hHHHHHHHcCCCCchHHHHH---HHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchH
Q 011565 305 YAANIFQTAGLSPSTGTISY---ALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPAL 381 (483)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (483)
|.-..++..|++...+..++ .....+...+.|.+.||+|||+.-+..+++..++++.... .+..
T Consensus 56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------------~~~~ 122 (354)
T PF05631_consen 56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------------SNYP 122 (354)
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------------cccH
Confidence 34445566788765555444 3445567778899999999999888877777777765432 4455
Q ss_pred HHHHHHHHHHHhhcccccchhhh-ccc----cCCCccchhhhHHHH-HHHHHHHHHHHHHHHHHHh---hhhhHHHHHHH
Q 011565 382 TLAGVLVYIGSFSSGMGATPWVL-MSE----IFPINIKGVGGSLTT-LVNWFGAWAISYTFNFLET---WSSYGTFLLYA 452 (483)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~~~~---~~~~~~~~~~~ 452 (483)
.++..-++.|..........-++ +.| -+|++..+...+... ..+.+-.+.+..+..++.+ .+...+|....
T Consensus 123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~ 202 (354)
T PF05631_consen 123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAI 202 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHH
Confidence 55555566666555554443222 233 245444455555444 2234444555555555555 23466777777
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 011565 453 AVNILGIVFITTVVPETKGR 472 (483)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~ 472 (483)
.+.+++.+++....+|+.+.
T Consensus 203 ~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 203 VLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHHhcccccCCC
Confidence 77777777666656665543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.027 Score=53.24 Aligned_cols=123 Identities=12% Similarity=0.021 Sum_probs=86.3
Q ss_pred hHHHHhhhcC---chhHHHHHHHHHHH-HHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh---------c--
Q 011565 73 QNAIREDLSL---SLAEYSVFGSILTF-GAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE---------G-- 137 (483)
Q Consensus 73 ~~~i~~~~~~---s~~~~~~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---------~-- 137 (483)
+-.+++.+.+ ++..+.++=+...+ +..+..++.+++.+++.+.+++-+.+..+....+++++.- +
T Consensus 46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~ 125 (509)
T COG3202 46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPE 125 (509)
T ss_pred HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHH
Confidence 3346666654 45667888888888 7788899999999999999999888888877777777621 1
Q ss_pred ---------------------hhHHHHHHHHhhhccccccc-ccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 138 ---------------------ALSLDLGRLATGYGMGIFSY-VVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 138 ---------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
.|...+...+.=+-...... .-.....|.+..+|-.|..++++.+.+++..+++.+..
T Consensus 126 ~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~ 205 (509)
T COG3202 126 FSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS 205 (509)
T ss_pred HHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222222 33456678888888899999999999999999887766
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00031 Score=70.47 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=94.2
Q ss_pred HcCCCCchHHHHH---HHHHHHHHHHHHHHHhh-cCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHH
Q 011565 312 TAGLSPSTGTISY---ALLQVVVTFFNIIMIDR-AGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVL 387 (483)
Q Consensus 312 ~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (483)
..+.+......++ ....-+..+++|++.|+ +|+++.+..+.++..++..++.+...... .........+..+
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~----~~~~~~~~~l~gL 92 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS----GHPLHDLLDLLGL 92 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc----ccchHHHHHHHHH
Confidence 3466554333333 33344667788999996 79999999999888888877765311000 0001122234445
Q ss_pred HHHHHhhcccccchhhhccccCCCc---cchhhhHHHHHHHHHHHHHHHHHHHHHHh-h-------hhhHHHHHHHHHHH
Q 011565 388 VYIGSFSSGMGATPWVLMSEIFPIN---IKGVGGSLTTLVNWFGAWAISYTFNFLET-W-------SSYGTFLLYAAVNI 456 (483)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~-------~~~~~~~~~~~~~~ 456 (483)
.++.++.++.-|...+...|.++++ .+.....+.....++|+.+++.+.+++.+ . ++...|.+.+++.+
T Consensus 93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ 172 (654)
T TIGR00926 93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI 172 (654)
T ss_pred HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence 5556666666677778888888643 36778888888899999999999998874 2 24445555555555
Q ss_pred HHHHHHH
Q 011565 457 LGIVFIT 463 (483)
Q Consensus 457 ~~~~~~~ 463 (483)
++.++..
T Consensus 173 ia~lvf~ 179 (654)
T TIGR00926 173 LALIVFM 179 (654)
T ss_pred HHHHHHH
Confidence 5544433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00022 Score=67.67 Aligned_cols=144 Identities=15% Similarity=0.020 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCC-ccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcc
Q 011565 318 STGTISYALLQVVVTFFNIIMIDRAGR-KPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSG 396 (483)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (483)
+.......++..++++..|+...|.+. |+.+..+.+++.++.++.....+.. ....+.+.+.-++.|.+ .+
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-------~~~~y~mL~~R~l~Gvg-~~ 145 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-------NGVKYLMLVARILTGVG-VG 145 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHcCcC-cc
Confidence 555666788888999999999999886 7888899999999988884442211 11333344444443333 33
Q ss_pred cccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh--------------hhhhHHHHHHHHHHHHHHHHH
Q 011565 397 MGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET--------------WSSYGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 462 (483)
.....-.|+++..-.+.|.++.+..+....+|.++||.+...+.. +-+..+.++.+.+.++..++.
T Consensus 146 n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i 225 (488)
T KOG2325|consen 146 NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVII 225 (488)
T ss_pred cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHH
Confidence 345567888887777888888888888888888888876544422 123456777777777777777
Q ss_pred HhcccCC
Q 011565 463 TTVVPET 469 (483)
Q Consensus 463 ~~~~~~~ 469 (483)
..+.+|.
T Consensus 226 ~~~f~E~ 232 (488)
T KOG2325|consen 226 LFFFKEV 232 (488)
T ss_pred Hhheeec
Confidence 7777664
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.012 Score=56.93 Aligned_cols=113 Identities=11% Similarity=-0.019 Sum_probs=77.3
Q ss_pred chhHHHHHHHHHHH-HHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHh---------h----------------
Q 011565 83 SLAEYSVFGSILTF-GAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS---------E---------------- 136 (483)
Q Consensus 83 s~~~~~~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~---------------- 136 (483)
+++.+..+=....+ ...+......++++|++|.+++-+....+.....++++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45556666554444 445567889999999999999887777666666665542 1
Q ss_pred ------chhHHHHHHHHhhhccccccc-ccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 137 ------GALSLDLGRLATGYGMGIFSY-VVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 137 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
+.|...+..+..-+-.....+ .-..+..|.++.+|-.|..++.+.+.++|.++++.+..
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~ 201 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTS 201 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333333333333333333 35778899999999999999999999999999887655
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00046 Score=59.19 Aligned_cols=236 Identities=10% Similarity=0.010 Sum_probs=112.1
Q ss_pred cchhhHHhHHHHHHHHHHHHHH--Hhhc-------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHH
Q 011565 170 ELRGALTSANQLLIVIGASTFF--IIGT-------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAAL 240 (483)
Q Consensus 170 ~~rg~~~~~~~~~~~iG~~~~~--~l~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~ 240 (483)
|+|+..+.+...+.++|.++.- .+.. .-+|++.+.+.+++.++-++++..+-+. -....+++++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~-fd~~~~~~k~------ 74 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN-FDIYSPKEKQ------ 74 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCccccc------
Confidence 5677778888888888887653 3322 3369999998887776655443333111 0000000000
Q ss_pred HHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCC----
Q 011565 241 QKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLS---- 316 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 316 (483)
+.++.+..++....+.+|++..|...+.+........ ....+.+.......++.+
T Consensus 75 -------------------~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V--~p~t~~~~~~~~~~s~~ni~~~ 133 (267)
T PF07672_consen 75 -------------------EKENSTLSKKPSYKSILKEKETWKWILIYGIWLVVVV--FPFTPSWFNILIWISPANIKSV 133 (267)
T ss_pred -------------------ccccccccccchHHHHHccchHHHHHHHHHHHheeEE--EeccchhHhHhhhcCccccccc
Confidence 0011122345677888998887766555544433221 111223333333332221
Q ss_pred --Cc-------hHHHHHHHHHHHHHHHHHHHHhh-cCCccchhhHhHHHHHHHHHHHHHHH-HHhcCCcccccchHHHHH
Q 011565 317 --PS-------TGTISYALLQVVVTFFNIIMIDR-AGRKPLLLFAATGLLLGCLLLAAAFF-LKTYGLALESVPALTLAG 385 (483)
Q Consensus 317 --~~-------~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 385 (483)
.+ ....++-.+.++|.+..|...+. +.||+.+. ....+.+.+..+..... ..+. ..........+
T Consensus 134 ~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~-~~~~~gi~~~~l~~~~~~~~g~---~~~~~~~~f~I 209 (267)
T PF07672_consen 134 VSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIH-FIISLGIVFFVLSIVVVYFVGP---GNAAGFAFFYI 209 (267)
T ss_pred ccccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhCc---chHHHHHHHHH
Confidence 11 11222223333444555555554 34444433 22222222222222211 1111 11123444555
Q ss_pred HHHHHHHhhcccccchhhhcccc--CCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 011565 386 VLVYIGSFSSGMGATPWVLMSEI--FPINIKGVGGSLTTLVNWFGAWAISYTFN 437 (483)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 437 (483)
..++.|.+.-+..++......|. ..|++.|...|+.-.++++...+.-.+..
T Consensus 210 ~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S 263 (267)
T PF07672_consen 210 FGFLAGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILS 263 (267)
T ss_pred HHHHHHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777767777665555554 23455566666666666665555444433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00071 Score=62.69 Aligned_cols=158 Identities=12% Similarity=0.075 Sum_probs=94.3
Q ss_pred CCcchHHHHHHhhhhhh---ccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHH
Q 011565 279 RYLHSVTIGVGLMVIQQ---FGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGL 355 (483)
Q Consensus 279 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 355 (483)
+++|..++...+..+.+ +..+..+..+...+++ .-....+...++.+..++..+.+-|+.||+|-|....++....
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 34455555555554444 3333344445555543 1111346677888889999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHH
Q 011565 356 LLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYT 435 (483)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 435 (483)
+++..+=.......- ++............+.+...........-...--+|+++|+++..+..+.+.+|.+++..+
T Consensus 120 ~iGa~Ir~iss~p~v----~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFV----PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHhhhccCccc----cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 888776665421100 0001111122222222222222222222334456899999999999999988888888777
Q ss_pred HHHHHh
Q 011565 436 FNFLET 441 (483)
Q Consensus 436 ~g~~~~ 441 (483)
...+..
T Consensus 196 ppilV~ 201 (480)
T KOG2563|consen 196 PPILVP 201 (480)
T ss_pred cceecC
Confidence 666543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0005 Score=63.89 Aligned_cols=112 Identities=13% Similarity=-0.020 Sum_probs=83.2
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHH-----HHHHHHHHHHhhchhHHHHHHHHhhhcccc
Q 011565 80 LSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFV-----CIAGWLAIYFSEGALSLDLGRLATGYGMGI 154 (483)
Q Consensus 80 ~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (483)
+.-..++..+...+|.+|-.++.--...+ |+ |++.+.+.+- ..+.....-+.++.|..++.-+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 34345678888888888877775433222 33 4443333322 222223334568999999999999999999
Q ss_pred cccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 155 FSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 155 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
.+......+.|-.++++|..+++....+-++|..++.+++-
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0076 Score=48.30 Aligned_cols=106 Identities=8% Similarity=-0.027 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccc
Q 011565 321 TISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGAT 400 (483)
Q Consensus 321 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (483)
..+......++.++.+.+.+++|.|+.+.++.+...+-...... ...+.++....+.|++.+..+..
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------------~~~~~l~~~s~l~G~~~a~lW~a 109 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------------PNSYTLYPASALLGFGAALLWTA 109 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHhhhhHHhhHh
Confidence 34445556677788899999999999999888776654444332 34566677777778877777777
Q ss_pred hhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 401 PWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
.-.++.+...++.+++..++...+...+.++|..+.-.+
T Consensus 110 qg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 110 QGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888889999999999888888888887665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0022 Score=61.69 Aligned_cols=151 Identities=19% Similarity=0.111 Sum_probs=90.7
Q ss_pred HHHcCCCCchHHHHHHHHHH--HHHHHHHHHHhhcC-----CccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHH
Q 011565 310 FQTAGLSPSTGTISYALLQV--VVTFFNIIMIDRAG-----RKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALT 382 (483)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (483)
.+..+.++........+..+ ...++.|.++|-+. ||+-+.++.++..++.+.+.... ....+...
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~--------~~~~s~~~ 88 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP--------ASESSAAI 88 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc--------cccchhhh
Confidence 34458888777777777666 55678999999863 44445555555544444444321 00112222
Q ss_pred HHHHHHHHHHhhcccccchhhhccccCC--CccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHH
Q 011565 383 LAGVLVYIGSFSSGMGATPWVLMSEIFP--INIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGI 459 (483)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 459 (483)
....+++...+........-++..|... ++.+|...+.......+|++++..+.|.+.+ .+....+.+.+.+..+..
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 2233333333333334445566666652 2337888888899999999999999999888 555555666665555555
Q ss_pred HHHHhcccC
Q 011565 460 VFITTVVPE 468 (483)
Q Consensus 460 ~~~~~~~~~ 468 (483)
+......+|
T Consensus 169 ~~~~~~~~e 177 (433)
T PF03092_consen 169 IVALFLLEE 177 (433)
T ss_pred HHHHHhhhh
Confidence 555555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=61.73 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=95.7
Q ss_pred CcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHH---hh-------chh
Q 011565 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYF---SE-------GAL 139 (483)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~-------~~~ 139 (483)
...+..+...-|+++..+|..-+...+....+.+...++.+|+|..|.=.+++....++..++.. .+ +..
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 44444455556999999999999999999999999999999999988887777655444444332 21 333
Q ss_pred HHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhccch
Q 011565 140 SLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVAT 198 (483)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~~ 198 (483)
.++.+-++.-+|.=+.-.+..-++.|..|+++||...+......++--++...++-.++
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44445555555555556677788899999999999999998888888777766655433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=97.26 E-value=6e-05 Score=68.89 Aligned_cols=116 Identities=10% Similarity=-0.015 Sum_probs=2.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCccchhhHhHHHHHHHHHHHHHHHHHhcC-CcccccchHHHHHHHHHHHHhhccc
Q 011565 320 GTISYALLQVVVTFFNIIMIDRA-GRKPLLLFAATGLLLGCLLLAAAFFLKTYG-LALESVPALTLAGVLVYIGSFSSGM 397 (483)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (483)
....+.++..+|+.+..+..-+. ++|++. ...+.-.+...++...-...... .+..-.+.++.++..++.++..+-.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45567888999999888743221 233333 22222221111111110100000 0000012233344444555555555
Q ss_pred ccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 011565 398 GATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTF 436 (483)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 436 (483)
......+..+..++++|..+..+....-.+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888887788877776653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.026 Score=55.51 Aligned_cols=119 Identities=15% Similarity=-0.013 Sum_probs=68.2
Q ss_pred HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHH-HHHHHH-HHHHHH----HHhhch-hHHHHHHHHh
Q 011565 76 IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRV-SSFVCI-AGWLAI----YFSEGA-LSLDLGRLAT 148 (483)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~-~~~~~~-~~~~~~----~~~~~~-~~l~~~r~l~ 148 (483)
+..-+|-+..+.+.+.+++.+|.++|+...+++.++.-++...+- +..+.+ ++..+. ++...+ ..++..-++.
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 120 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI 120 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888899999999999999999999988744333322111 111111 111111 111111 1223445567
Q ss_pred hhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 149 GYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
++..|+..|....+..+.. .++-|+..|-......+|.++|.++.+
T Consensus 121 ~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~ 166 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFP 166 (521)
T ss_pred HHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHH
Confidence 7888888888776665532 222345555566666666666665554
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.015 Score=58.14 Aligned_cols=158 Identities=13% Similarity=0.010 Sum_probs=111.2
Q ss_pred HHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHH
Q 011565 284 VTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCL 360 (483)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 360 (483)
.+.+..+..+........+..-+..+-+..++++ +.+...+-++.++......+...|..|-+.+-++.++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 3344444444444444455555555555556654 4445556677778888888888898888999999999999998
Q ss_pred HHHHHHHHHhc-------------CC---------------------------cccccchHHHHHHHHHHHHhhcccccc
Q 011565 361 LLAAAFFLKTY-------------GL---------------------------ALESVPALTLAGVLVYIGSFSSGMGAT 400 (483)
Q Consensus 361 ~~~~~~~~~~~-------------~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (483)
+..+-.+..+. +. ..+...+..+++..++.|.+....++.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 88876444221 00 000113445666677778887788888
Q ss_pred hhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 401 PWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
..+|+-|...+++.....|+..++..+|-++|-.+++....
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 89999999999999999999999999999988888887654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0056 Score=42.42 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=43.2
Q ss_pred hccchhhhHHhHHHHHHHcCCCCchHHHHH---HHHHHHHHHHHHHHHhhcCCccchhhHhH
Q 011565 295 QFGGINAIAFYAANIFQTAGLSPSTGTISY---ALLQVVVTFFNIIMIDRAGRKPLLLFAAT 353 (483)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 353 (483)
.++....+.-|.+.+.++.|.++...+.+. .+..+++.++.|.++||.++++.......
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 333455566677777777899976655555 55777899999999999999887765443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0003 Score=69.14 Aligned_cols=149 Identities=17% Similarity=0.017 Sum_probs=2.1
Q ss_pred hhhhccchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHH
Q 011565 292 VIQQFGGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFL 368 (483)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (483)
.+.+.........-++.+-+..++++ +.+...+-++.++..++..++.+|..|-+.+-.+.++++++.+++.+-.+.
T Consensus 12 ~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~ 91 (539)
T PF03137_consen 12 GLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFL 91 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhh
Confidence 33334444455555566656666665 455566677788888888888888888888889999999999888776554
Q ss_pred HhcCC---c-----------------------------------ccccchHHHHHHHHHHHHhhcccccchhhhccccCC
Q 011565 369 KTYGL---A-----------------------------------LESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFP 410 (483)
Q Consensus 369 ~~~~~---~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 410 (483)
.+... . ..+.....+++..++.|.+....++...+|+-|.++
T Consensus 92 ~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~ 171 (539)
T PF03137_consen 92 SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS 171 (539)
T ss_dssp ------------------------------------------------------------SSS-----------------
T ss_pred cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc
Confidence 33100 0 001123445555666677777778888999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 411 INIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 411 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
++..+...|+......+|-++|-.+++...
T Consensus 172 ~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 172 KKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ------------------------------
T ss_pred cccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 999999999999999998888877777554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.084 Score=50.36 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhh---hhchhHHHHHHHHHHHHHHHHHHHh------------------hchhHHHHHHHH
Q 011565 89 VFGSILTFGAMIGAITSGPIAD---FIGRKGAMRVSSFVCIAGWLAIYFS------------------EGALSLDLGRLA 147 (483)
Q Consensus 89 ~~~s~~~l~~~~~~~~~G~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l 147 (483)
.-.-...++..++..+.+.+++ |+||++.+.++..+..++.++.-.. +++...++.-++
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 3333444555556666666665 5799999999988888877777542 245567888899
Q ss_pred hhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 148 TGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
.|++-+......+.++.+.+ +++|..+.++...-..++..++.....
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999998 667888888887777777766555443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.058 Score=53.10 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=46.0
Q ss_pred HHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHH
Q 011565 387 LVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET--WSSYGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~ 462 (483)
.++.++..+...|....+..+. ..+..+...|-.+....+|+++|..+.+++.- .|...+.++.+.+.++++++.
T Consensus 117 ~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 117 VLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3344455555556554443332 22235677888899999999999999887765 555555555555555554433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.27 Score=46.18 Aligned_cols=127 Identities=12% Similarity=0.139 Sum_probs=84.8
Q ss_pred hHHhHHHHHHH-cCCCCchH-HHH---HHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc
Q 011565 302 IAFYAANIFQT-AGLSPSTG-TIS---YALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376 (483)
Q Consensus 302 ~~~~~~~~~~~-~~~~~~~~-~~~---~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (483)
-|+..+...+. .+++.... .-+ ..-..++..+....+.|..+.|++++.+.+...+...++.+.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~----------- 91 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG----------- 91 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 45555555443 45553221 111 222445666777889999999999998888777776666554
Q ss_pred ccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
.+...+-+.-++.|..... -...++++-...|+++-.++.+.......+|..++..++-.+..
T Consensus 92 -~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 92 -TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred -CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544433 33456777777888888999999999999999998888877766
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.05 Score=51.46 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=74.0
Q ss_pred cchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCc---cchhhhHHHH
Q 011565 346 PLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPIN---IKGVGGSLTT 422 (483)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~ 422 (483)
+++.++.++..+|.+++......... ........++..+.+.+.+.++.=|...++..|.++++ ++.+......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~---~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY 78 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL---PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFY 78 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC---------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh---hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHH
Confidence 45667777888888776554321110 11122345666666777787888788889999998765 4566777788
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHH
Q 011565 423 LVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFI 462 (483)
Q Consensus 423 ~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 462 (483)
...++|..+++.+.+++.+ .++...|.+.++..+++.+..
T Consensus 79 ~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 79 WGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 8899999999999999988 555555555555555554433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.25 Score=44.86 Aligned_cols=115 Identities=25% Similarity=0.217 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhccc
Q 011565 318 STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGM 397 (483)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (483)
+.......+...++.+..|.+.||.|||+.+..+.....++....... .......+.......+...+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~ 111 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA----------PNVGLALLLILRLLQGLGGGGL 111 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----------ccchHHHHHHHHHHHHhhhHHH
Confidence 444555566667777999999999999966666655433332222222 0012333333333355555556
Q ss_pred ccchhhhccccCCC-ccchhhhHHHHH-HHHHHHHHHHHHHHHHHhh
Q 011565 398 GATPWVLMSEIFPI-NIKGVGGSLTTL-VNWFGAWAISYTFNFLETW 442 (483)
Q Consensus 398 ~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~~~~~ 442 (483)
.+....+..|..|+ +.|+...+.... ...+|..++|.+.+.+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999887 678888888888 5778888888777666543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.11 Score=50.00 Aligned_cols=106 Identities=9% Similarity=0.096 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhchh--HHHHHHH--HHHHHHHHHHHHh---------hchhHHHHHHHHhhhcccc
Q 011565 88 SVFGSILTFGAMIGAITSGPIADFIGRK--GAMRVSS--FVCIAGWLAIYFS---------EGALSLDLGRLATGYGMGI 154 (483)
Q Consensus 88 ~~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~~~~~~--~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~g~ 154 (483)
-.....|.++-.+|..+..+.. .-++| ++.+.+. +++.-..++|..- ++-+..++.-++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4567777777777777554321 11222 3332221 2233333344322 3566677889999999999
Q ss_pred cccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhh
Q 011565 155 FSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG 194 (483)
Q Consensus 155 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~ 194 (483)
....++.+..+..++++|..+..+...+..+|..+|..++
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888888888887763
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.21 Score=48.32 Aligned_cols=110 Identities=13% Similarity=0.027 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc------------cc-------chHHHHHHHHHHH
Q 011565 331 VTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE------------SV-------PALTLAGVLVYIG 391 (483)
Q Consensus 331 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-------~~~~~~~~~~~~~ 391 (483)
..++-+++++|++|++............++++.+.........+++ +. ..+....+.+..-
T Consensus 60 ~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~e 139 (472)
T TIGR00769 60 FMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAE 139 (472)
T ss_pred HHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHH
Confidence 3677899999999999887776666666666555543322110000 00 1222223333334
Q ss_pred Hhhccccc-chhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 392 SFSSGMGA-TPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 392 ~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
..+....+ ..|.+++|....++..+-.++....+++|..+++.+..++.
T Consensus 140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 67899999999999999999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=3.7 Score=37.20 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcccCc--cc
Q 011565 94 LTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPK--EL 171 (483)
Q Consensus 94 ~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~ 171 (483)
..+..+.++++.+.+.+++|-|.++.++...+... +..-+=+.+..++-.-.+.|++.+..+..--+|+++.-.+ ++
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 34455666677779999999999999887766542 2222336788899999999999999998888888766421 22
Q ss_pred h-------------hhHHhHHHHHHHHHHHHHHHh
Q 011565 172 R-------------GALTSANQLLIVIGASTFFII 193 (483)
Q Consensus 172 r-------------g~~~~~~~~~~~iG~~~~~~l 193 (483)
| |....+++.+..+|..++..+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3 345566666667776665544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.03 Score=49.39 Aligned_cols=132 Identities=8% Similarity=-0.025 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchhhhcc
Q 011565 87 YSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEI 166 (483)
Q Consensus 87 ~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 166 (483)
.|.+.-+-.+-..+..+......||+.--+=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 3555555556666777777888888644333344556677788888999999999999999888888776666554443
Q ss_pred cCccchhhHHhHHHHHHHHHHHHHH----Hhhc--cchhHHHHHHhHHH-HHHHHHHhhcCCCC
Q 011565 167 APKELRGALTSANQLLIVIGASTFF----IIGT--VATWRTLALVGVIP-CAVLLLGLFLIPES 223 (483)
Q Consensus 167 ~~~~~rg~~~~~~~~~~~iG~~~~~----~l~~--~~~wr~~f~~~~~~-~~~~~~~~~~~~e~ 223 (483)
+++.- .+.+..+.+.+.++|. .+.. .++-|...++...+ ++.+...++.++++
T Consensus 143 Y~~~~----i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 143 YPSIV----IAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CCCce----eccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 33322 2222323222233332 2222 34567777775544 44455556666554
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.02 Score=52.40 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhh-chhHHHHHHH--HHHHHHHHHHH----------HhhchhHHHHHHHHhhhccccc
Q 011565 89 VFGSILTFGAMIGAITSGPIADFI-GRKGAMRVSS--FVCIAGWLAIY----------FSEGALSLDLGRLATGYGMGIF 155 (483)
Q Consensus 89 ~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~--~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~g~~ 155 (483)
.....|.++-.+|....++.--+- .+|++...+. +++.-..++|. +-+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 356678888888888777642111 2444433211 22222222221 2235566788899999999999
Q ss_pred ccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhh
Q 011565 156 SYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG 194 (483)
Q Consensus 156 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~ 194 (483)
....+.+..+..++++|..+-.+......+|..+|..++
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888888888887777654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.94 E-value=4.5 Score=38.05 Aligned_cols=85 Identities=14% Similarity=0.048 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHH
Q 011565 380 ALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILG 458 (483)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 458 (483)
...........+.+.+......+-..++ +|++.....++-.+..+.+.+..--..-....+ ......|+..+.+..+.
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~ll 195 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLL 195 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHH
Confidence 3333444444444444445555555444 576766555544444444444333322222222 22233444444444444
Q ss_pred HHHHHhc
Q 011565 459 IVFITTV 465 (483)
Q Consensus 459 ~~~~~~~ 465 (483)
+++.+..
T Consensus 196 C~i~y~~ 202 (406)
T KOG1479|consen 196 CFVLYLV 202 (406)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.95 E-value=3.7 Score=38.08 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=22.9
Q ss_pred hhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 011565 401 PWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTF 436 (483)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 436 (483)
.-........+++.|-+..........|.+++..++
T Consensus 154 VDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 154 VDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 334445556677777777666666677777766554
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.17 Score=47.63 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=85.0
Q ss_pred hHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHH---HHHHHHHHHHHHHHHHhh----cCCccchhh-HhHH
Q 011565 283 SVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTIS---YALLQVVVTFFNIIMIDR----AGRKPLLLF-AATG 354 (483)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~d~----~~~~~~~~~-~~~~ 354 (483)
.+.....+....+++ +..-..|.+.+....|....+...+ ..+.+++..++.|..+|| +||||..+. +...
T Consensus 33 ~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 33 KLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 333333444444443 3444556666666677775544443 355667778889999996 677776554 4445
Q ss_pred HHHHHHHHHHHHHHHhcCCccccc-----chHHHHHHHHHHHHhhcccccchhhhccccCCCccchh-hhHHHHHHHHHH
Q 011565 355 LLLGCLLLAAAFFLKTYGLALESV-----PALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGV-GGSLTTLVNWFG 428 (483)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~g 428 (483)
..+++.++....-....=.+.... .....++..-+.=+.........-++..|+..++++.+ +++....+..+|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 555555554432221100001111 11111111112222222334455678888887666666 999999999999
Q ss_pred HHHHHHHHHH
Q 011565 429 AWAISYTFNF 438 (483)
Q Consensus 429 ~~~~~~~~g~ 438 (483)
+.+|-...++
T Consensus 192 nvLGY~~g~y 201 (498)
T KOG0637|consen 192 NVLGYALGSY 201 (498)
T ss_pred ceeeeecccc
Confidence 9888776653
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=90.88 E-value=1.7 Score=30.55 Aligned_cols=62 Identities=15% Similarity=-0.014 Sum_probs=48.9
Q ss_pred HhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHH
Q 011565 304 FYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAA 365 (483)
Q Consensus 304 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (483)
..+|...++.+++. +.......++.++|.+...++.++.++++.+..+.+...+....+.+.
T Consensus 13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777775 456667788999999999999998888888888888888888777764
|
Note that many members are hypothetical proteins. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.27 E-value=6.2 Score=39.51 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=94.5
Q ss_pred hhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhh-cCCccchhhHhHHHHHHHHHHHHHHHHHhcCCc----
Q 011565 300 NAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDR-AGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLA---- 374 (483)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 374 (483)
..+..|+...++..+..+......+........+.+++++|- .||-+++.++.++..++..++.........-..
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 445555555554444223333444445555777889999997 588889888888888887666665444321100
Q ss_pred --------c-cccchHHHHHHHHHHHHhhcccccchhhhccccCCC----ccc--hhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 375 --------L-ESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPI----NIK--GVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 375 --------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~--~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
. .......+...+.....+.++.-+...+.-.|.++. +.+ ..-........+.|..++..+.-++
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 001122344444455556667778888888888872 222 3556666777888888888888888
Q ss_pred Hh-hhhhHHHHHHHHHHHHH
Q 011565 440 ET-WSSYGTFLLYAAVNILG 458 (483)
Q Consensus 440 ~~-~~~~~~~~~~~~~~~~~ 458 (483)
.+ .++...+.+..++..++
T Consensus 218 q~~~~w~lgf~i~~~~~~la 237 (571)
T KOG1237|consen 218 QDNVGWKLGFGIPTVLNALA 237 (571)
T ss_pred hhcccceeeccHHHHHHHHH
Confidence 66 44444444444444433
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.25 Score=43.85 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=82.9
Q ss_pred hhhcCch-hHHHHHHHHHHHHHHHHHHhHHHhhhhh-chhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhccccc
Q 011565 78 EDLSLSL-AEYSVFGSILTFGAMIGAITSGPIADFI-GRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIF 155 (483)
Q Consensus 78 ~~~~~s~-~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 155 (483)
+.+..+. .|+-|....|.+|..+..--.-..--++ =--.++..-.+++.+...+..+.+++|..++.-+.-|+-.|..
T Consensus 280 ~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGas 359 (409)
T KOG3880|consen 280 HGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGAS 359 (409)
T ss_pred cCCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchH
Confidence 4455544 4688999998887654432211111110 0011222334445556666778899999999999999988888
Q ss_pred ccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc
Q 011565 156 SYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT 195 (483)
Q Consensus 156 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~ 195 (483)
+....--+.+-.++++|-.+++....+-++|..++..++-
T Consensus 360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 8888888888788999999999999999999999888765
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=88.03 E-value=8.2 Score=37.79 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccc----------c---------chHHHHHHHH
Q 011565 328 QVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALES----------V---------PALTLAGVLV 388 (483)
Q Consensus 328 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---------~~~~~~~~~~ 388 (483)
.++...+-.++++++++.++...........+.++++..+....-.+++. . ..|......+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 34455667788999999888776666666655555555443221111000 0 0112222333
Q ss_pred HHHHhhccccc-chhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 389 YIGSFSSGMGA-TPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 389 ~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
..-..+....+ ..|.+++|..+.++..+-+++.....++|.++++.+..++.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 458999999999999999999999999999999988877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.08 E-value=9.9 Score=34.82 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011565 379 PALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET 441 (483)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 441 (483)
..+.+......+|...+.=.|..+.+..... .......+.....-++|...+....+++.-
T Consensus 104 ~~~Vly~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lll 164 (508)
T COG4262 104 SRLVLYALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLL 164 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHh
Confidence 4455666666777777776777766665521 122223333334467777777776666544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=82.75 E-value=14 Score=35.92 Aligned_cols=38 Identities=13% Similarity=0.011 Sum_probs=23.6
Q ss_pred hhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 403 VLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 403 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
-.+-.+..++.++-+..-.....+.|.+++-.++=.+.
T Consensus 141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 34444556677777766666666777777666654443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.62 E-value=7.1 Score=28.46 Aligned_cols=37 Identities=11% Similarity=-0.108 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhHHHhhhhh-chhHHHHHHHHHHHH
Q 011565 91 GSILTFGAMIGAITSGPIADFI-GRKGAMRVSSFVCIA 127 (483)
Q Consensus 91 ~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~ 127 (483)
.++=+++..+.....||+.||| |.++..++..++.+.
T Consensus 48 lssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf 85 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGF 85 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4455566777778889999997 677766555554443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.19 E-value=19 Score=31.84 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhchh--HHHHHHHHHHHHHHHHHHH----hh---chhHHHHHHHHhhhccccccc
Q 011565 87 YSVFGSILTFGAMIGAITSGPIADFIGRK--GAMRVSSFVCIAGWLAIYF----SE---GALSLDLGRLATGYGMGIFSY 157 (483)
Q Consensus 87 ~~~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~~~~~~~~~~~~~~~~~~----~~---~~~~l~~~r~l~G~~~g~~~~ 157 (483)
.|.+.+.+.++..+|+-+..++..|-..| ..+.+..+..++...+... +| +...-+++..+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 58999999999999999998888876554 3444444444433333322 22 122225555666677888999
Q ss_pred ccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhh----ccchhHHHHHHhHHHHHHHHH
Q 011565 158 VVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIG----TVATWRTLALVGVIPCAVLLL 215 (483)
Q Consensus 158 ~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~----~~~~wr~~f~~~~~~~~~~~~ 215 (483)
....+=+++.|++.|...+.++-.-.++=.-++-.-- ...+-|..|-++.....++.+
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence 9999999999999999998887665554433332221 123567888887766665433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 483 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 7e-32 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 41/406 (10%), Positives = 118/406 (29%), Gaps = 43/406 (10%)
Query: 79 DLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRK----GAMRVSSFVCIAGWLAIYF 134
+ S + S ++ G ++D + + +++ V + +
Sbjct: 56 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115
Query: 135 SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRG---ALTSANQLL--IVIGAST 189
+ + + G+ G+ ++ RG ++ + + +
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Query: 190 FFIIGTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDAD 249
+ W + ++ L F + + EE++ + A+
Sbjct: 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE 235
Query: 250 ISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANI 309
A +I + + + L + I + + ++G ++ Y +
Sbjct: 236 QELTAKQI-------------FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY---L 279
Query: 310 FQTAGLSPSTGTISYALLQVVVTFFNII------MIDRAGRKPLLLFAATGLLLGCLLLA 363
+ + + +Y L + ++ + R R +F T + + ++
Sbjct: 280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339
Query: 364 AAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTL 423
+ ++ IG G + E+ P G T L
Sbjct: 340 MNP----------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389
Query: 424 VNWFGAWAISYTFN--FLETWSSYGTFLLYAAVNILGIVFITTVVP 467
+ G + ++ + G F++ +IL ++ + V+
Sbjct: 390 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 5e-05
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 20/62 (32%)
Query: 221 PESPR-WLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARL-LDLFQK 278
PES R W EE LQ+ DA QE+ E KA+ L+ + +
Sbjct: 84 PESIRKW------REEQRKRLQE---LDA---ASKVMEQEWRE------KAKKDLEEWNQ 125
Query: 279 RY 280
R
Sbjct: 126 RQ 127
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 8e-05
Identities = 41/327 (12%), Positives = 84/327 (25%), Gaps = 90/327 (27%)
Query: 15 DKMTEPL--LRGEQNLADEN-GGSGKKTGSKDSLYMVYLSTLVA-VSGSYS----FGTGV 66
K+ + L LR +N+ + GSGK + + V SY +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGK-------------TWVALDVCLSYKVQCKMDFKI 184
Query: 67 GY-SSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGR-KGAMRVSSF- 123
+ + N+ L + T + + I + ++ +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 124 --------VCIAGWLAIYFSEGALSLDLG-R-LATGYGMGIFSYVVPVFTAEIAPKELRG 173
V A F +L + L T + ++ T I+
Sbjct: 245 NCLLVLLNVQNA-KAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 174 ALTSANQLLIVIGASTFFIIGTVATW---RTLAL----VGVIPCAVLLLGLFLIPESPRW 226
LT + + R L + P + ++ + W
Sbjct: 297 TLTPDEVK-------SLL-----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 227 -----LAKIGKHEEFEAALQKL-----RG---------KDADISQEATEI-------QEY 260
+ E++L L R A I + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 261 IETLERLPKARLLDLFQKR---YLHSV 284
+ + +L K L++ K + S+
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSI 431
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 483 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.51 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.37 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.35 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.3 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.3 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.28 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.23 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=368.35 Aligned_cols=427 Identities=28% Similarity=0.499 Sum_probs=339.2
Q ss_pred CchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcC--------chhHHHHHHHHHHHHHHHHHHhHHHhhhhhch
Q 011565 43 DSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSL--------SLAEYSVFGSILTFGAMIGAITSGPIADFIGR 114 (483)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Gr 114 (483)
.++++.+.+.++.+++.+.++++.+.++..+|.+.++++. ++.+.|++.+++.+|..++++++|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456778888888899999999999999999999988743 34567999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH------------------HhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHH
Q 011565 115 KGAMRVSSFVCIAGWLAIY------------------FSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALT 176 (483)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~ 176 (483)
|++++++.+++.+++++++ +++|+++++++|+++|++.|+..+...++++|+.|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999999 4789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhc------------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHh
Q 011565 177 SANQLLIVIGASTFFIIGT------------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLR 244 (483)
Q Consensus 177 ~~~~~~~~iG~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 244 (483)
++.+.+..+|..+++.++. ..+||+.+.+..+..++.++..+++||+|+|+..+++.+++.+.+++..
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 9999999999998887764 2368999999998888888889999999999999999999999888775
Q ss_pred cCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHH
Q 011565 245 GKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGT 321 (483)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 321 (483)
.++...++..+..+...+.++ ...... ....++..+......+..+.....+..|.+.+.+..+.+.. ...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDHGRK---TGGRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQT 318 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HTTHHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhhh---hhhHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHH
Confidence 443222221111111111111 111111 12233445555556666666777888888888887776643 344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccch
Q 011565 322 ISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATP 401 (483)
Q Consensus 322 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (483)
...++..+++.++++++.||+|||+.+..+...+.++++.+...... .......+....++...+..+..++.
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-------QAPGIVALLSMLFYVAAFAMSWGPVC 391 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 56677888999999999999999999998888887777666554321 11333444445555556666777888
Q ss_pred hhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCH
Q 011565 402 WVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-------WSSYGTFLLYAAVNILGIVFITTVVPETKGRTL 474 (483)
Q Consensus 402 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (483)
+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+ .+....+++++++++++.++.++++||||+|+.
T Consensus 392 ~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 392 WVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 8999999999999999999999999999999988877654 233456788888999998888999999999999
Q ss_pred HHHHHhhc
Q 011565 475 EEIQATMN 482 (483)
Q Consensus 475 ~~~~~~~~ 482 (483)
||+|+.||
T Consensus 472 eei~~~f~ 479 (491)
T 4gc0_A 472 EELEALWE 479 (491)
T ss_dssp HHHGGGTC
T ss_pred HHHHHHhC
Confidence 99998886
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=325.61 Aligned_cols=392 Identities=13% Similarity=0.083 Sum_probs=291.2
Q ss_pred hhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHH
Q 011565 45 LYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFV 124 (483)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 124 (483)
++.++......++..+...++.....+.+|.+.+++ .++.+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 345566677777788888888888999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----hhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----c
Q 011565 125 CIAGWLAIYF----SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----V 196 (483)
Q Consensus 125 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~ 196 (483)
.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999988876 4
Q ss_pred ch-hHHHHHHhHHHHHHH-HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHH
Q 011565 197 AT-WRTLALVGVIPCAVL-LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLD 274 (483)
Q Consensus 197 ~~-wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (483)
.+ ||+.|++.+++.++. ++.++++||+|++...+++.+. ....+.+ .++..+++....+...++
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDD---YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccccc---chhhhhcccccccchHHH
Confidence 57 999999988877664 4456778888753211111100 0000000 000001111112222456
Q ss_pred hhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCC---chHHHHHHHHHHHHHHHHHHHHhhc--CCccch
Q 011565 275 LFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSP---STGTISYALLQVVVTFFNIIMIDRA--GRKPLL 348 (483)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~ 348 (483)
.++++.++...+..++..+. ......+.+.++++ .+.+. +.......++.+++.++.+++.||+ +||+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 67776666555554444443 33445556666555 46665 3455566778889999999999999 998887
Q ss_pred hhHhHHHH-HHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHH
Q 011565 349 LFAATGLL-LGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWF 427 (483)
Q Consensus 349 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 427 (483)
..+..+.. ++++++.. .+..+.+......++.+.+.....+....+..|.+|++.|+++.|+.+...++
T Consensus 324 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWM----------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHHHHHHHHHHHHTTS----------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 76665554 44333322 11123444555555666666666677778999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhc
Q 011565 428 -GAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTV 465 (483)
Q Consensus 428 -g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 465 (483)
|..++|.+.|.+.+ .++...+.+.+++.+++.++.++.
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 566666777777666666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=308.11 Aligned_cols=355 Identities=15% Similarity=0.072 Sum_probs=270.3
Q ss_pred HHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHH
Q 011565 52 TLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLA 131 (483)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 131 (483)
..++++..+..+++.....+.+|.+.+++|+++.+.|++.+.+.+++.++++++|+++||+|||++++++.++.+++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34445555666667778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred H---HHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhccc-----h-----
Q 011565 132 I---YFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVA-----T----- 198 (483)
Q Consensus 132 ~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~-----~----- 198 (483)
+ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.. +
T Consensus 108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9 88999999999999999999999999999999999999999999999999999999999887732 2
Q ss_pred --------------------hHHHHHHhHHHHHHHHHHh--hcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHH
Q 011565 199 --------------------WRTLALVGVIPCAVLLLGL--FLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATE 256 (483)
Q Consensus 199 --------------------wr~~f~~~~~~~~~~~~~~--~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (483)
||+.|++.++..++..+.. ...||+++. ++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~----------------------- 241 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD----------------------- 241 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC-----------------------
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc-----------------------
Confidence 9999988766655544333 334555421 0000
Q ss_pred HHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHH-HHHc-CCCC---chHHHHHHHHHHHH
Q 011565 257 IQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANI-FQTA-GLSP---STGTISYALLQVVV 331 (483)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~~~~~~~ 331 (483)
++++..+.++++++|++.++...+..++...... ....+.+.+ .++. |.+. +.......++.+++
T Consensus 242 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 311 (438)
T 3o7q_A 242 ------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG 311 (438)
T ss_dssp ------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH
Confidence 0112234556778888877776666555555433 333444544 4444 6664 34555667788899
Q ss_pred HHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCC
Q 011565 332 TFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPI 411 (483)
Q Consensus 332 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 411 (483)
+++.+++.||++||+.+..+..+..++++++... ... .......+.+++.+...+...++..|.+|+
T Consensus 312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999888887777766555442 222 233334556666677778888888899996
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hh-hhHHHHHHHHHHHH
Q 011565 412 NIKGVGGSLTTLVNWFGAWAISYTFNFLET-WS-SYGTFLLYAAVNIL 457 (483)
Q Consensus 412 ~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~ 457 (483)
+ ++.+.++.. ...+|..++|.+.|++.+ .+ ....+.+.+++.++
T Consensus 379 ~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 379 D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 6 888888877 678999999999999998 44 45555554443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=283.00 Aligned_cols=389 Identities=15% Similarity=0.038 Sum_probs=254.9
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh-hchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccc
Q 011565 80 LSLSLAEYSVFGSILTFGAMIGAITSGPIADF-IGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYV 158 (483)
Q Consensus 80 ~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (483)
+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccCccc--hhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhh-cCCCCh----hHH
Q 011565 159 VPVFTAEIAPKEL--RGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLF-LIPESP----RWL 227 (483)
Q Consensus 159 ~~~~i~~~~~~~~--rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p----~~~ 227 (483)
..+++.|++|+++ |+.++++.+.+.++|..++|.+++ ..+||+.|++.++..++..+..+ ..|+.. +..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence 9999999999988 777888888999999998888877 46899999998776666544432 222110 000
Q ss_pred HhhCCHHHHHHHHHH---------------HhcCcccchHHHHHHHH--------HHHHHccCchhhhHHhhhcCCcchH
Q 011565 228 AKIGKHEEFEAALQK---------------LRGKDADISQEATEIQE--------YIETLERLPKARLLDLFQKRYLHSV 284 (483)
Q Consensus 228 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (483)
.++.+.++.++..+. ......+.++....... ......+..+....+..+.......
T Consensus 209 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (491)
T 4aps_A 209 TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPL 288 (491)
T ss_dssp SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 011122222222221 00011111110000000 0000000000000011111111222
Q ss_pred HHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchh-----hHhHHHHHHH
Q 011565 285 TIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLL-----FAATGLLLGC 359 (483)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~ 359 (483)
.+...+...........++.|.....+......+.......+..+++.++.+++.||++||+... .+..+.++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~ 368 (491)
T 4aps_A 289 FIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSF 368 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Confidence 22333333333333333444443332222234567777788888999999999999999987655 5555555555
Q ss_pred HHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 360 LLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
+++........ .....+........++.+.+.....+....++.|.+|++.|+++.|+.+....+|..++|.+.+++
T Consensus 369 ~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~ 445 (491)
T 4aps_A 369 LLMAIPGALYG---TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445 (491)
T ss_dssp TTTHHHHHHCC---CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhcC---CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444321111 011234555566666777777777788889999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 011565 440 ETWSSYGTFLLYAAVNILGIVFITTVVPETKG 471 (483)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (483)
.+.+....+...+++++++.++.++..++.++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 446 NAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777888887777777776666655444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=278.98 Aligned_cols=359 Identities=14% Similarity=0.064 Sum_probs=268.5
Q ss_pred HHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHH
Q 011565 54 VAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY 133 (483)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 133 (483)
++++..+...++.....+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34555566677778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHH
Q 011565 134 FSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIP 209 (483)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~ 209 (483)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++ ..+||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877 45899999998888
Q ss_pred HHHHHH-HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHH
Q 011565 210 CAVLLL-GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGV 288 (483)
Q Consensus 210 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (483)
.++..+ .++++||++++. ++ +++.+.++++.+|+|..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVD---AP--------------------------------RTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTT---CC--------------------------------CCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCC---cc--------------------------------cccHHHHHHHHhcCcchHHHHHHH
Confidence 777655 567788875420 00 111233455677777777666666
Q ss_pred HhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHH-HHHHHHHHHHHHH
Q 011565 289 GLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATG-LLLGCLLLAAAFF 367 (483)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 367 (483)
.+..........+.+.|..+..+......+.......++.+++.++.+++.||.+++ +..+... ...+...+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 666655555555556665554433322334555666777788888888888888762 2222222 2222221111110
Q ss_pred HHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 011565 368 LKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGT 447 (483)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 447 (483)
. ..+.+......++.+.+.+...+...++..|..| ++|+++.|+.+...++|..++|.+.|.+.+.+.+..
T Consensus 287 ~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 357 (375)
T 2gfp_A 287 G--------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 357 (375)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred c--------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 0 0123334445555666666677888899999998 899999999999999999999999999988554544
Q ss_pred HHHHHHHHHHH
Q 011565 448 FLLYAAVNILG 458 (483)
Q Consensus 448 ~~~~~~~~~~~ 458 (483)
.+...++.+++
T Consensus 358 ~~~~~~~~~~~ 368 (375)
T 2gfp_A 358 GLLMTLMGLLI 368 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-32 Score=258.66 Aligned_cols=367 Identities=13% Similarity=0.046 Sum_probs=224.3
Q ss_pred cccCcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHH---HHHHHhhch-hHH
Q 011565 67 GYSSPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGW---LAIYFSEGA-LSL 141 (483)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~~l 141 (483)
+...|.+|. +++++|+|+.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ....+++.. ..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665 556799999999999999999999999999999999999999999888776532 212233322 123
Q ss_pred HHHHHHhhhcccccccccchhhhcccCc--cchhhHHhHHHHHHHHHHHHHHHhhc---cchhHHHHHHhHHHHHHHHHH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIAPK--ELRGALTSANQLLIVIGASTFFIIGT---VATWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~iG~~~~~~l~~---~~~wr~~f~~~~~~~~~~~~~ 216 (483)
+..+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++ ..+||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 4566777776665555555555555543 34565566665555666666666555 247999999877766555555
Q ss_pred hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhc
Q 011565 217 LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQF 296 (483)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (483)
+++.+|++++ +.+.++ ..+. +.++....+++++++++.++...+..........
T Consensus 184 ~~~~~~~~~~---~~~~~~---------~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (417)
T 2cfq_A 184 LFFAKTDAPS---SATVAN---------AVGA--------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYD 237 (417)
T ss_dssp SCSSCCCCSC---SSCSSS---------SSSS--------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCccccc---cccccc---------cccc--------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHHHH
Confidence 4444443210 000000 0000 0011112344566777666554443333322222
Q ss_pred cchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCC
Q 011565 297 GGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGL 373 (483)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (483)
....+.+.|.+..++..+.+. +.......+..+++.++.++++||++||+.+..+..+.+++.+.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T 2cfq_A 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------- 309 (417)
T ss_dssp HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 222334444433221111112 233344456777889999999999999998877776666554443321
Q ss_pred cccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHH-HHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHH
Q 011565 374 ALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSL-TTLVNWFGAWAISYTFNFLET-WSSYGTFLLY 451 (483)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~ 451 (483)
.+...+.....+.+.......+..+.++.|.+|++.|+++.++ .+....+|++++|.+.|++.+ .+....+.+.
T Consensus 310 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 310 ----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp ----CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 2222333333333333333334456889999999999999999 488889999999999999888 5556667777
Q ss_pred HHHHHHHHHHHHhcccCCCC
Q 011565 452 AAVNILGIVFITTVVPETKG 471 (483)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~ 471 (483)
+++.+++.++.+...+|+++
T Consensus 386 ~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHHhhhcCCCc
Confidence 77777776665555665443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=251.73 Aligned_cols=393 Identities=13% Similarity=-0.007 Sum_probs=221.8
Q ss_pred HHHhhhc------CchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-chhHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHH
Q 011565 75 AIREDLS------LSLAEYSVFGSILTFGAMIGAITSGPIADFI-GRKGAMRVSSFVCIAGWLAIYFSE-GALSLDLGRL 146 (483)
Q Consensus 75 ~i~~~~~------~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 146 (483)
.+.+++| .++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|+
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5678899 9999999999999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HhhhcccccccccchhhhcccCccchhhHHhH---HHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhc
Q 011565 147 ATGYGMGIFSYVVPVFTAEIAPKELRGALTSA---NQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFL 219 (483)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~---~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~ 219 (483)
++|++.+...+...+++.|++|+++|+++.+. ...+.++|..++|.+++ ..+||+.|++.++..++..+.+++
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876666 88899999999998877 468999999988777665554433
Q ss_pred C-CCChhHHHhhCCHHHHHHHHH-HHhcCcccchHHHHHHH-----------------------------HHHHHHccCc
Q 011565 220 I-PESPRWLAKIGKHEEFEAALQ-KLRGKDADISQEATEIQ-----------------------------EYIETLERLP 268 (483)
Q Consensus 220 ~-~e~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 268 (483)
. ++.++...++++..+..+... ..+..... .++..... ...+.+ .
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 273 (524)
T 2xut_A 198 GRKRYIHMPPEPKDPHGFLPVIRSALLTKVEG-KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFV---G 273 (524)
T ss_dssp SSSSCCCCC--------------------CTT-HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHH---H
T ss_pred hcccccccCCCCccchhHHHHHHHHHhhhhcc-cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhccc---c
Confidence 2 221100000000000000000 00000000 00000000 000000 0
Q ss_pred hhhhHHh-----------hhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCC----CCchHHHHHHHHHHHHHH
Q 011565 269 KARLLDL-----------FQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGL----SPSTGTISYALLQVVVTF 333 (483)
Q Consensus 269 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 333 (483)
+.++++. .++++.........+.....+........+........+. ..+.......++.+++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (524)
T 2xut_A 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIP 353 (524)
T ss_dssp TGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGG
T ss_pred cchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHH
Confidence 1111000 0111111111111111111111111111222222222222 112222222233334444
Q ss_pred HHHHHH----hhcCCc----cchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhc
Q 011565 334 FNIIMI----DRAGRK----PLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLM 405 (483)
Q Consensus 334 ~~g~l~----d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (483)
+.+++. +|.++| +.+..+..+.+++++++.... .........+.+.+....++.+.+.+...+...+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 430 (524)
T 2xut_A 354 FNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQ---LMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFA 430 (524)
T ss_dssp GTTTC------------CCHHHHHTHHHHHHHHHHTTTTTT---TTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332 333322 234444444444444333210 000000112344555566666777777778888999
Q ss_pred cccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh---h---------hHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 011565 406 SEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWS---S---------YGTFLLYAAVNILGIVFITTVVPETKGRT 473 (483)
Q Consensus 406 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (483)
.|..|++.|++++|+.++...+|+.++|.+.+.+.+.. + ...+++.+++++++.++.+++.++.++++
T Consensus 431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999887621 0 11255666666666665555555554443
Q ss_pred H
Q 011565 474 L 474 (483)
Q Consensus 474 ~ 474 (483)
.
T Consensus 511 ~ 511 (524)
T 2xut_A 511 H 511 (524)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=135.39 Aligned_cols=152 Identities=14% Similarity=0.155 Sum_probs=127.5
Q ss_pred cCcchHHHHhh-hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh--chhHHHHHHHHHHH-HHHHHHHHh--hchhHHH
Q 011565 69 SSPTQNAIRED-LSLSLAEYSVFGSILTFGAMIGAITSGPIADFI--GRKGAMRVSSFVCI-AGWLAIYFS--EGALSLD 142 (483)
Q Consensus 69 ~~~~~~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l~ 142 (483)
.....|.+.++ +|.++.+.+++.+.+.++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.
T Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 44555656655 899999999999999999999999999999999 99999888877766 666666665 3677788
Q ss_pred HHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHH-HHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHh
Q 011565 143 LGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVI-GASTFFIIGT----VATWRTLALVGVIPCAVLLLGL 217 (483)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~i-G~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~ 217 (483)
+..++.|++.+...+...+++.|.+|+++|+++.++.+....+ |..+++.+.+ ..||+..|++.++..++..+..
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8889999998888888899999999999999999999999888 9888887766 5589999999888777765554
Q ss_pred hcC
Q 011565 218 FLI 220 (483)
Q Consensus 218 ~~~ 220 (483)
+++
T Consensus 431 ~~~ 433 (451)
T 1pw4_A 431 IVV 433 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-13 Score=127.05 Aligned_cols=142 Identities=8% Similarity=0.021 Sum_probs=116.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchh
Q 011565 83 SLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVF 162 (483)
Q Consensus 83 s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 162 (483)
+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999999999999999999999999998888888788888888888888888888877777777889
Q ss_pred hhcccCccchhhHHhH-HHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH-hhcCCCCh
Q 011565 163 TAEIAPKELRGALTSA-NQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLG-LFLIPESP 224 (483)
Q Consensus 163 i~~~~~~~~rg~~~~~-~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 224 (483)
+.|.+|++.|+.+.++ ++....+|..++|.+++ ..|++..|.+.++.+++..+. ++..||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999998888 47667777777777666 457888888888777775544 55567654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-12 Score=120.32 Aligned_cols=134 Identities=14% Similarity=0.006 Sum_probs=108.6
Q ss_pred chhhhHHhHHHHHHHcCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCc
Q 011565 298 GINAIAFYAANIFQTAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLA 374 (483)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (483)
.........+.+.++.+.+... ......++..++.++.|+++||+|||+.+..+..+.+++.++.....
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------- 112 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-------- 112 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc--------
Confidence 3345666677777778888644 44555667778999999999999999999999998888887773321
Q ss_pred ccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 375 LESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
...+.+.+.+..++.+.+.+...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 113 -~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 113 -EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01456666777777888888888888999999999999999999999999999999999999988
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-12 Score=124.44 Aligned_cols=154 Identities=13% Similarity=-0.004 Sum_probs=112.7
Q ss_pred CcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh-----chhHHHHH
Q 011565 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE-----GALSLDLG 144 (483)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~ 144 (483)
....+.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3345667888888888888888888899999999999999999999999999888888777665432 11122222
Q ss_pred -HHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----------cchhHHHHHHhHHHHHHH
Q 011565 145 -RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----------VATWRTLALVGVIPCAVL 213 (483)
Q Consensus 145 -r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----------~~~wr~~f~~~~~~~~~~ 213 (483)
-+..+++. ...+....+.+|.+|.+.|+.++++......+|..+++.+.. ..++.+.|++.++++++.
T Consensus 377 ~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 377 LFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 22222222 345677789999999999999999998888888877765432 234566788877777765
Q ss_pred H-HHhhcCCCCh
Q 011565 214 L-LGLFLIPESP 224 (483)
Q Consensus 214 ~-~~~~~~~e~p 224 (483)
. +.++++||+.
T Consensus 456 ~i~~~~~~PETk 467 (491)
T 4gc0_A 456 ALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHCCCCT
T ss_pred HHHHHheecCCC
Confidence 4 4578899984
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.4e-12 Score=117.40 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=121.9
Q ss_pred hhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc
Q 011565 300 NAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376 (483)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (483)
.......+.+.++.+.+.. .......++..++.+..|+++||+|||+.+..+..+..++..+....
T Consensus 17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 85 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----------- 85 (375)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----------
Confidence 3344455666666677764 44455567778999999999999999999999998888888777664
Q ss_pred ccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH
Q 011565 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVN 455 (483)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 455 (483)
.+...+....++.+.+.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+++.+ .++...+.+.++..
T Consensus 86 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 86 -SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3455566666677777777778888999999999999999999999999999999999999887 46666666666666
Q ss_pred HHHHHHHHhcccCCC
Q 011565 456 ILGIVFITTVVPETK 470 (483)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (483)
++..+...+..||++
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 165 AGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHCcccC
Confidence 666554555566543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-11 Score=118.33 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhc-CCccchhhHhHHHHHHHHHHHHHHHHHhcCCccccc-chHHHHHHHHHHHHhhc
Q 011565 318 STGTISYALLQVVVTFFNIIMIDRA-GRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESV-PALTLAGVLVYIGSFSS 395 (483)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 395 (483)
+.......++..++.++.|+++||+ |||+.+..+.++..++.+++... . +...+....++.+.+.+
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF------------EHSVQGFYTGLFLIALGSG 124 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT------------SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh------------cccHHHHHHHHHHHHHhcc
Confidence 4455566778889999999999999 99999998888888877776653 3 45556666677777777
Q ss_pred ccccchhhhccccCCCccchhhhHH---HHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHH
Q 011565 396 GMGATPWVLMSEIFPINIKGVGGSL---TTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 396 ~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 463 (483)
...+...+++.|.+|+++|+...+. .+....+|..++|.+.+.+.+ .++...+.+.+++.++..+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999876666 889999999999999999887 5666666666666555544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=118.89 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=108.9
Q ss_pred cCCCC---chHHHHHHHHHHHHHHHHHHHHhh-cCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHH
Q 011565 313 AGLSP---STGTISYALLQVVVTFFNIIMIDR-AGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLV 388 (483)
Q Consensus 313 ~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (483)
.+.+. +.......++..++.++.|+++|| +|||+.+..+.++..++.+++... .+...+.+..+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 116 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP------------FGASALFGSII 116 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC------------CSTTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHH
Confidence 46664 345566677888999999999999 899999999988888887766542 34555666666
Q ss_pred HHHHhhcccccchhhhccccCCCcc--chhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHH
Q 011565 389 YIGSFSSGMGATPWVLMSEIFPINI--KGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 463 (483)
+.+.+.+...+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+ .++...+.+.++..+++.+...
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777888899999999988 7788888999999999999999999988 6666677666655555544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 483 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 9e-20 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 89.4 bits (220), Expect = 9e-20
Identities = 57/442 (12%), Positives = 123/442 (27%), Gaps = 31/442 (7%)
Query: 46 YMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITS 105
+ ++L + Y + P + S + S ++
Sbjct: 24 WQIFLGIFFGYAAYYLVRKNFALAMPYL----VEQGFSRGDLGFALSGISIAYGFSKFIM 79
Query: 106 GPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALS----LDLGRLATGYGMGIFSYVVPV 161
G ++D + + + A L + F A S + + G+ G+
Sbjct: 80 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR 139
Query: 162 FTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVAT---WRTLALVGVIPCAVLLLGLF 218
++ RG + S +G ++ + A + + +L+ LF
Sbjct: 140 TMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 199
Query: 219 LIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQK 278
G E + QE T Q + +
Sbjct: 200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ-----------IFMQYVLPN 248
Query: 279 RYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIM 338
+ L + I + + ++G ++ Y + A S Y + T M
Sbjct: 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308
Query: 339 IDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMG 398
D+ R + L + + + ++ IG G
Sbjct: 309 SDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV-------DMICMIVIGFLIYGPV 361
Query: 399 ATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFN--FLETWSSYGTFLLYAAVNI 456
+ E+ P G T L + G + ++ + G F++ +I
Sbjct: 362 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 421
Query: 457 LGIVFITTVVPETKGRTLEEIQ 478
L ++ + V+ K R + +Q
Sbjct: 422 LAVILLIVVMIGEKRRHEQLLQ 443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 50.2 bits (118), Expect = 3e-07
Identities = 34/408 (8%), Positives = 100/408 (24%), Gaps = 32/408 (7%)
Query: 76 IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFS 135
+ + +S ++ + + ++ +++ G ++D +G + + + + +
Sbjct: 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93
Query: 136 EGALSLDLGRLATG--YGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFII 193
L L G+ + A A E ++ + + +
Sbjct: 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153
Query: 194 GTVATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQE 253
G + + ++ + A
Sbjct: 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA--------------- 198
Query: 254 ATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTA 313
L+LF++ L +++ V + A + + F T
Sbjct: 199 ----NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG 254
Query: 314 GLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGL 373
+ +++ A + LLL +++ ++
Sbjct: 255 EQGTRVFGYVTTMGELLNASIMFF----APLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 374 ALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVG-GSLTTLVNWFGAWAI 432
+ V L + + ++ F + +
Sbjct: 311 SALEVVIL-----KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365
Query: 433 SYTFNFL-ETWSSYGTFLLYAAVNILGIVFITTVVPETKGRTLEEIQA 479
S + E+ G +L+ V + + + +L Q
Sbjct: 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQV 413
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 483 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.51 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.36 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-40 Score=319.28 Aligned_cols=399 Identities=12% Similarity=0.058 Sum_probs=277.5
Q ss_pred chhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHH
Q 011565 44 SLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSF 123 (483)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 123 (483)
.++.+|.....++++.+...++...++...|.+. |+|+|.+|.|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 3445677777777777777777777777778665 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh----chhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----
Q 011565 124 VCIAGWLAIYFSE----GALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT---- 195 (483)
Q Consensus 124 ~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~---- 195 (483)
+.+++.+++++++ +++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence 9999999998764 78899999999999999999999999999999999999999999999999988887655
Q ss_pred -cchhHHHHHHhHHHHHHH-HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhH
Q 011565 196 -VATWRTLALVGVIPCAVL-LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLL 273 (483)
Q Consensus 196 -~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (483)
..+||+.|++.++..++. ++.+++.+|+|+........+. ..++.++..+..+++....+...+
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 243 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------KNDYPDDYNEKAEQELTAKQIFMQ 243 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------CCC-------------CCTHHHHH
T ss_pred hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh--------------hhhcccchhhccccccchhhHHHH
Confidence 348999999977776664 4446667776643211111110 000001111111122233344455
Q ss_pred HhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchh
Q 011565 274 DLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLL 349 (483)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 349 (483)
..++++..+......++.... ......+.+.++.+ .+.+. +.......+..+++.++.+++.||++|++...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 319 (447)
T d1pw4a_ 244 YVLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319 (447)
T ss_dssp HTSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHcCchHHHHHHHhhhhhhh----hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence 566666555544444444333 23344444544433 34443 34556667788899999999999999887654
Q ss_pred hHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHH-H
Q 011565 350 FAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWF-G 428 (483)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g 428 (483)
.......+.......... ....+........++.++...+..+....+..|.+|++.|+++.|+.+...++ |
T Consensus 320 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g 392 (447)
T d1pw4a_ 320 TGVFFMTLVTIATIVYWM-------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392 (447)
T ss_dssp HHHHHHHHHHHHHHHTTS-------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHh-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 444333332222222100 11233444455555556666666677788899999999999999999998887 5
Q ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhcccC
Q 011565 429 AWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTVVPE 468 (483)
Q Consensus 429 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (483)
.+++|.+.|++.| .++...+.+.+++.+++.++...+.++
T Consensus 393 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999988 566666666666666666555554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.5e-29 Score=239.10 Aligned_cols=374 Identities=12% Similarity=0.022 Sum_probs=241.4
Q ss_pred cccccccCcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhH-
Q 011565 63 GTGVGYSSPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALS- 140 (483)
Q Consensus 63 ~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (483)
.+..+...|.+|. +.+++|+|++++|++.+++.+++.++++++|+++||+||||+++++..+..++..+..+..+...
T Consensus 20 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T d1pv7a_ 20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3344456777775 67789999999999999999999999999999999999999999999999999888888765544
Q ss_pred ---HHHHHHHhhhcccccccccchhhhcccCcc--chhhHHhHHHHHHHHHHHHHHHhhc---cchhHHHHHHh-HHHHH
Q 011565 141 ---LDLGRLATGYGMGIFSYVVPVFTAEIAPKE--LRGALTSANQLLIVIGASTFFIIGT---VATWRTLALVG-VIPCA 211 (483)
Q Consensus 141 ---l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~iG~~~~~~l~~---~~~wr~~f~~~-~~~~~ 211 (483)
.++.+.+.+.+.+...........+..+++ ++.+..+........+..+++.+++ ..+|+..+... ....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 179 (417)
T d1pv7a_ 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179 (417)
T ss_dssp HTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHH
Confidence 355666666666555555554444444332 3344555666666666666666655 33455555554 44444
Q ss_pred HHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhh
Q 011565 212 VLLLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLM 291 (483)
Q Consensus 212 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (483)
...+.++..+|+++. +.+.++. .+..++.......+.++++..+.........
T Consensus 180 ~~~~~~~~~~~~~~~---~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T d1pv7a_ 180 LAVLLFFAKTDAPSS---ATVANAV------------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp HHHHHHSSCCCSCSS---SCSSHHH------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccc---hhhhhhh------------------------hhhcccccccccccccccccccchhhhhHHH
Confidence 455666777776531 1111100 0001112222233333333333333333322
Q ss_pred hhhhccchhhhHHhHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHH
Q 011565 292 VIQQFGGINAIAFYAANIFQTAGLS---PSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFL 368 (483)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (483)
.............+.....+..+.+ .........++..++..+.+++.||.++|+.+..+..+..++.+.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--- 309 (417)
T d1pv7a_ 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc---
Confidence 2221111111111111110000011 1233444566777888899999999999999988888877777666543
Q ss_pred HhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHH-HHHHHHHHHHHHHHHHHHHh-hhhhH
Q 011565 369 KTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLT-TLVNWFGAWAISYTFNFLET-WSSYG 446 (483)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~~~~-~~~~~ 446 (483)
.+.+......++.+.+.+...+...++..|.+|++.|+++.|+. +....+|..++|.+.|++.| .+...
T Consensus 310 ---------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~ 380 (417)
T d1pv7a_ 310 ---------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ---------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 44555566666667777777788889999999999999999985 55678999999999999998 67777
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCHH
Q 011565 447 TFLLYAAVNILGIVFITTVVPETKGRTLE 475 (483)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (483)
.+++.+++.++..++..+.++++++.+..
T Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 381 AYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 78888888887777777777766655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=6.9e-15 Score=137.37 Aligned_cols=146 Identities=8% Similarity=0.025 Sum_probs=124.1
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhccccccc
Q 011565 78 EDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSY 157 (483)
Q Consensus 78 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 157 (483)
++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 331 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 34445667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcccCccchhhHHhHH-HHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHH-HhhcCCCC
Q 011565 158 VVPVFTAEIAPKELRGALTSAN-QLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLL-GLFLIPES 223 (483)
Q Consensus 158 ~~~~~i~~~~~~~~rg~~~~~~-~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~-~~~~~~e~ 223 (483)
...+++.|.+|+++|+++.++. +....+|..++|.+.+ ..||+..|++.+++.++..+ ..+.++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999875 4566677777776665 57899999997777766444 45555544
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.8e-12 Score=122.34 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=108.8
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHH---H--hhchhHHHHHHHHhh
Q 011565 75 AIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY---F--SEGALSLDLGRLATG 149 (483)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~---~--~~~~~~l~~~r~l~G 149 (483)
.+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+...... . ..+.+...+.-++.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999987654444333332222222 1 346777788888999
Q ss_pred hcccccccccchhhhcccCccchhhHHhHHHHHHHH-HHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH
Q 011565 150 YGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVI-GASTFFIIGT----VATWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~i-G~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~ 216 (483)
++.+...+....+..|.+|+++||.+.++.+....+ |.+++|.+.+ ..||+..|++.+...++..++
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 426 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 426 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 998888889999999999999999999998776555 4556666554 678999998877666665444
|