Citrus Sinensis ID: 011595
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FNL7 | 582 | Peptide transporter PTR3- | yes | no | 0.966 | 0.800 | 0.700 | 0.0 | |
| Q9FNL8 | 586 | Peptide transporter PTR3- | no | no | 0.962 | 0.791 | 0.648 | 1e-172 | |
| Q8VZR7 | 583 | Probable peptide/nitrate | no | no | 0.964 | 0.797 | 0.497 | 1e-127 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.935 | 0.791 | 0.460 | 1e-116 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.939 | 0.794 | 0.446 | 1e-110 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.931 | 0.767 | 0.422 | 1e-108 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.921 | 0.752 | 0.425 | 1e-103 | |
| Q9M1I2 | 555 | Probable peptide/nitrate | no | no | 0.904 | 0.785 | 0.412 | 1e-99 | |
| Q9M331 | 602 | Probable peptide/nitrate | no | no | 0.939 | 0.752 | 0.401 | 2e-98 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.844 | 0.746 | 0.433 | 2e-97 |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/468 (70%), Positives = 390/468 (83%), Gaps = 2/468 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M+VLTLSV++PG+KPP C N ++C+KAS LQL +FF ALYTLA+GTGGTKPNISTIGA
Sbjct: 113 MMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGA 172
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD F+PKEK KLSFFNWWMFSIFFG LFANTVLVY+QDN+GWTLGYGLPTLGL+ISI
Sbjct: 173 DQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISI 232
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF GTPFYRHK PTGSPFT+MA+VIVA+ RK N P+ + +EL +Y +K +
Sbjct: 233 TIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFP 292
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
I T +LRF ++A++KT + + W LC+ T+VEETKQML M+P+L TFVPS MLAQINTL
Sbjct: 293 IHPTPSLRFLDRASLKTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTL 352
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
FVKQGTTLDR + SF IPPASL GFVTLSMLI +VLYDR FVKI R++T NPRGITLLQ
Sbjct: 353 FVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQ 412
Query: 301 RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEK-GQQVPLTIFVLLPQFVLMGTADAF 359
RMGIGL+ HI+IM++AS TERYRL VA DH ++ + G ++PLTIF LLPQFVLMG AD+F
Sbjct: 413 RMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSF 472
Query: 360 LEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419
LEVAK+EFFYDQAPE+MKSLGTSYS T+L +GNF S+FLLSTVS ITK+ G +GWILNNL
Sbjct: 473 LEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRG-RGWILNNL 531
Query: 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELK 467
N S LDYYY FFA+LN++NFV FLVV KFYVY+AEV+DS++V E+K
Sbjct: 532 NESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579
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Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 605 bits (1560), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/466 (64%), Positives = 373/466 (80%), Gaps = 2/466 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLSVSLPGLKPP C N ++C+KAS +QL +FF ALYTLA+GTGGTKPNISTIGA
Sbjct: 113 MALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGA 172
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFDEF+PK+K HK SFFNWWMFSIFFG FA TVLVY+QDN+GW +GYGL TLGL+ SI
Sbjct: 173 DQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSI 232
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF GT YRHK P GSPFT+MA+VIVA++RK P+ ++ YEL +YA K +
Sbjct: 233 FIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFP 292
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
I ST +LRF N+A++KT ST+ W LC++T+VEETKQML M+P+L TFVPS MLAQI TL
Sbjct: 293 IHSTSSLRFLNRASLKTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTL 352
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
F+KQGTTLDR + ++F IPPASL+GF T SML+ +V+YDR FVK MR+ T NPRGITLLQ
Sbjct: 353 FIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQ 412
Query: 301 RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEK-GQQVPLTIFVLLPQFVLMGTADAF 359
RMGIG+++HI+IM+IAS TERYRL VA +H + + +PL+IF LLPQ+VLMG ADAF
Sbjct: 413 RMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAF 472
Query: 360 LEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419
+E+AK+EFFYDQAPE+MKSLGTSY+ T++ VG F S+ LLS+VS ITK+ G +GWI NNL
Sbjct: 473 IEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQG-RGWIQNNL 531
Query: 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEE 465
N S LD YY FFA+LN+LNF+ FLVV +FY Y+A+V+ S V +E
Sbjct: 532 NESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKE 577
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Peptide transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 236/474 (49%), Positives = 322/474 (67%), Gaps = 9/474 (1%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
MI+LT++V++ L+P + C KAS+LQ+ F+ +LYT+A+G GGTKPNIST GA
Sbjct: 110 MILLTMAVTVKSLRPTCENGV----CNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGA 165
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD + +EK K+SFFNWWMFS F GALFA LVYIQ+N+GW LGYG+PT+GL +S+
Sbjct: 166 DQFDSYSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSL 225
Query: 121 AIFFAGTPFYRHKK-PTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKY 179
+F+ GTPFYRHK T + + +V +AA + + P + ELYELD Y K+
Sbjct: 226 VVFYIGTPFYRHKVIKTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKH 285
Query: 180 MIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINT 239
+ T RF +KAA+KTSS P C+VT+VE K++L +I I + T +PST+ AQ+NT
Sbjct: 286 QVHHTPVFRFLDKAAIKTSSRVP---CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNT 342
Query: 240 LFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLL 299
LFVKQGTTLDR IGS+F+IP ASL FVTLSML+ V +YD+ FV MR+ T NPRGITLL
Sbjct: 343 LFVKQGTTLDRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLL 402
Query: 300 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAF 359
QR+G+G I I+ + IAS E R+ V K+ I Q VP++IF LLPQ+ L+G D F
Sbjct: 403 QRLGVGFAIQIVAIAIASAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVF 462
Query: 360 LEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419
+ +EFFYDQ+PE M+SLGT++ + +G+GNF ++FL++ + IT + G K WI NNL
Sbjct: 463 NAIGLLEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNL 522
Query: 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKVMRSRA 473
N S LDYYY F +++++N F+ A YVYK++ D+ E M ++A
Sbjct: 523 NDSRLDYYYGFLVVISIVNMGLFVWAASKYVYKSD-DDTKEFSGGGCVQMEAKA 575
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/463 (46%), Positives = 311/463 (67%), Gaps = 12/463 (2%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLS S+PGLKP C N+ C S+ Q +FF ALY +A+GTGG KP +S+ GA
Sbjct: 110 MTLLTLSASVPGLKPGNC---NADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGA 165
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFDE + EK K SFFNW+ FSI GAL A TVLV+IQ N+GW G+G+PT+ + I++
Sbjct: 166 DQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAV 225
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
FF G+ FYR ++P GSP TR+ +VIVAA RK +V +P + L+E ++ K
Sbjct: 226 CFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRK 285
Query: 181 IDSTQNLRFFNKAAVKTSS-------TNPWMLCSVTQVEETKQMLAMIPILVATFVPSTM 233
+ T NL+FF+KAAV++ S NPW LCSVTQVEE K ++ ++P+ V +T+
Sbjct: 286 LVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATV 345
Query: 234 LAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNP 293
+Q++T+FV QG T+D+ +G +F+IP ASL F T+S+L +YD++ + + R++T+N
Sbjct: 346 YSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNE 405
Query: 294 RGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353
RG T LQRMGIGLV+ I M+ A E RL K H+ ++ +Q+ ++IF +PQ++L+
Sbjct: 406 RGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQ-KQIHMSIFWQIPQYLLI 464
Query: 354 GTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413
G A+ F + ++EFFYDQAP+ M+SL ++ S+TT+ +GN+ ST L++ V ITK++G G
Sbjct: 465 GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPG 524
Query: 414 WILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVS 456
WI +NLN HLDY++ A L+ LNF+ +L ++K Y YK V
Sbjct: 525 WIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAVG 567
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/466 (44%), Positives = 301/466 (64%), Gaps = 13/466 (2%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LT+S S+PGL P S + A+ Q I F ALY +A+GTGG KP +S+ GA
Sbjct: 111 MTLLTISASVPGLTPTC-----SGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGA 165
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+ + KEK K SFFNW+ F I GA+ A++VLV+IQ N+GW G G+PT+ ++I++
Sbjct: 166 DQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAV 225
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
FFAG+ FYR +KP GSP TRM +VIVA+ RK V +P + LYE + +
Sbjct: 226 VFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRK 285
Query: 181 IDSTQNLRFFNKAAVKTSSTN-------PWMLCSVTQVEETKQMLAMIPILVATFVPSTM 233
++ T+ L FF+KAAV+T S N W LC+VTQVEE K ++ ++PI V +++
Sbjct: 286 LEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASV 345
Query: 234 LAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNP 293
+Q+ T+FV QG TLD+ +G +FKIP ASL F TLS+L +YD+ V R++T +
Sbjct: 346 YSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHE 405
Query: 294 RGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353
RG T LQR+GIGLVI I MV A E RL+ + H++ + + +P+TIF +PQ+ L+
Sbjct: 406 RGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE-ETIPMTIFWQVPQYFLV 464
Query: 354 GTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413
G A+ F + ++EFFYDQAP+ M+SL ++ S+T + GN+ STFL++ V+ +T+ G G
Sbjct: 465 GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPG 524
Query: 414 WILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSM 459
WI NLN HLDY++ A L+ LNF+ +L +AK+Y YK ++
Sbjct: 525 WIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHAL 570
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/461 (42%), Positives = 301/461 (65%), Gaps = 12/461 (2%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M LTLS S+P LKP C C A+ Q +FF LY +A+GTGG KP +S+ GA
Sbjct: 127 MSALTLSASVPALKPAECI---GDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGA 183
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+ + +E+ K SFFNW+ FSI GAL ++++LV+IQ+N GW LG+G+PT+ + ++I
Sbjct: 184 DQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAI 243
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
A FF GTP YR +KP GSP TR+++V+VA+ RK +V +P + LYE ++ A
Sbjct: 244 ASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRK 303
Query: 181 IDSTQNLRFFNKAAVKTSS-------TNPWMLCSVTQVEETKQMLAMIPILVATFVPSTM 233
I+ T + ++ +KAAV + +N W LC+VTQVEE K ++ M PI + + S +
Sbjct: 304 IEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAV 363
Query: 234 LAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNP 293
AQ++T+FV+QG ++ IG SF++PPA+L F T S++I V LYDR+ V + R++T
Sbjct: 364 YAQMSTMFVQQGRAMNCKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVD 422
Query: 294 RGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353
+G T +QRMGIGL + ++ M A+ E RL +A D +VE G VP+++ +PQ+ ++
Sbjct: 423 KGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFIL 482
Query: 354 GTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413
G A+ F + ++EFFYDQ+P+ M+SL ++ ++ T +GN+ S+ +L+ V+ T R+G +G
Sbjct: 483 GAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEG 542
Query: 414 WILNNLNVSHLDYYYAFFAILNVLNF-VFFLVVAKFYVYKA 453
WI +NLN HLDY++ A L+++N V+F A++ KA
Sbjct: 543 WISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQKKA 583
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/461 (42%), Positives = 296/461 (64%), Gaps = 17/461 (3%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLS SLP LKP AC + + C A+T+Q +FF LY +A+GTGG KP +S+ GA
Sbjct: 138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+ +P+E+ K SFFNW+ FSI G+ ++T+LV++Q+N+GW LG+ +PT+ + +SI
Sbjct: 198 DQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSI 257
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
A FF GTP YR +KP GSP TR+ +V+VAA RK + LP + LYE ++
Sbjct: 258 ASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRK 317
Query: 181 IDSTQNLRFFNKAAV-------KTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTM 233
I T +F +KAAV + +NPW LC+VTQVEE K ++ M PI + V S +
Sbjct: 318 IQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVL 377
Query: 234 LAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNP 293
+QI+TLFV+QG +++R I SF+IPPAS F TL +LI + +YDR+ V +RR+T P
Sbjct: 378 YSQISTLFVQQGRSMNRII-RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIP 436
Query: 294 RGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353
+G+T LQRMGIGL + ++ + A+ E RL +A+D V ++IF +PQ++LM
Sbjct: 437 KGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDF--------VAMSIFWQIPQYILM 488
Query: 354 GTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413
G A+ F + ++EFFYD++P+ M+S+ ++ ++ VG++ S+ +L+ V+ T G G
Sbjct: 489 GIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDG 548
Query: 414 WILNNLNVSHLDYYYAFFAILNVLNF-VFFLVVAKFYVYKA 453
W+ ++LN HLDY++ L ++N V+ L+ K KA
Sbjct: 549 WVPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVKHTKKKA 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 185/448 (41%), Positives = 273/448 (60%), Gaps = 12/448 (2%)
Query: 29 ASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFG 88
A ++ +FF ALY +AVG GG KP + T ADQF E +EKA K SFFN+W +I
Sbjct: 109 ARRMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLA 168
Query: 89 ALFANTVLVYIQDNMGWTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIV 148
+ A L++IQ+ + W+LG+ + + I+I IF G P YR + P GSPFTR+A+V+V
Sbjct: 169 SSIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMV 228
Query: 149 AAIRKWNVPLPTNP-----KELYELDLEDYAQKWKYMIDSTQNLRFFNKAAV-----KTS 198
AA++KW + + +E E LE Y++ T RF +KA +
Sbjct: 229 AALKKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNK 288
Query: 199 STNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKI 258
+ NPW LC+V QVEE K +L +IPI ++ + L Q+NT F+KQG+ +DR IG+ F I
Sbjct: 289 NRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTI 348
Query: 259 PPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASF 318
PPA+ V +++LI + LYDR FV ++R+ T + GIT LQR+G+GL + MVI
Sbjct: 349 PPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGL 408
Query: 319 TERYRLSVAKDHSIVEKGQQ-VPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMK 377
E RL VA+DH +++ ++ VP++ LLPQ++L+G D F V E FYDQ PE M+
Sbjct: 409 VEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMR 468
Query: 378 SLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVL 437
S+G + ++ +GVG+F ST ++STV I+K HG + W++NNLN +HLDYYY A LN +
Sbjct: 469 SIGAAIFISVVGVGSFVSTGIISTVQTISKSHGEE-WLVNNLNRAHLDYYYWIIASLNAV 527
Query: 438 NFVFFLVVAKFYVYKAEVSDSMEVLTEE 465
+ F+L +A ++YK +V +E
Sbjct: 528 SLCFYLFIANHFLYKKLQDKDDDVESER 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 190/473 (40%), Positives = 292/473 (61%), Gaps = 20/473 (4%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
+I+LTLS +PGLK AC + + +KA + FF A+Y +++GTGG KP++ + GA
Sbjct: 123 LILLTLSWFIPGLK--ACHEDMCVEPRKAHEIA---FFIAIYLISIGTGGHKPSLESFGA 177
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQF++ P+E+ K+S+FNWW + G L A TV+VYI+D +GW + + T+ ++ S
Sbjct: 178 DQFEDGHPEERKMKMSYFNWWNAGLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATSF 237
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF G PFYR++ P+GSP T M +V VAAI K N+P P++ L+EL E+Y + +
Sbjct: 238 FIFRIGKPFYRYRAPSGSPLTPMLQVFVAAIAKRNLPCPSDSSLLHELTNEEYTK--GRL 295
Query: 181 IDSTQNLRFFNKAAV--------KTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPST 232
+ S++NL+F +KAAV K +PW L +VT+VEE K ++ MIPI T
Sbjct: 296 LSSSKNLKFLDKAAVIEDRNENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGV 355
Query: 233 MLAQINTLFVKQGTTLDRAI-GSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTK 291
Q +TLF+KQ +DR I G+SF +PPASL + LS++I V +Y++ V ++RR T
Sbjct: 356 CATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRATG 415
Query: 292 NPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351
N RGI++LQR+G+G+V + M+IA+ E+ RL AK+H + + + L+ L PQF+
Sbjct: 416 NERGISILQRIGVGMVFSLFAMIIAALIEKKRLDYAKEHHM---NKTMTLSAIWLAPQFL 472
Query: 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGH 411
++G ADAF V E+FYDQ P++M+SLG ++ ++ LG +F + L++ ++ +
Sbjct: 473 VLGVADAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVLGAASFVNNLLITVSDHLAEEISG 532
Query: 412 KGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTE 464
KGW +LN S LD +Y A L N F++VA Y YK V S+ V+ +
Sbjct: 533 KGWFGKDLNSSRLDRFYWMLAALTAANICCFVIVAMRYTYKT-VQPSLAVVAD 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/448 (43%), Positives = 280/448 (62%), Gaps = 41/448 (9%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M+ LTLS S+PGLKP C I S C A+ +Q + F+ LY +A+GTGG KP +S+ GA
Sbjct: 128 MVALTLSASVPGLKPAEC--IGSL-CPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGA 184
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+ +P E+ K SFFNW+ F+I GA ++TVLV+IQ+N GW LG+ +PT+ + ++
Sbjct: 185 DQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLAT 244
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
FF GTP YR +KP GSP T + +V+VAA RK N+ +P
Sbjct: 245 MSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVPE-------------------- 284
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
DST ++TNPW LC+VTQVEE K +L ++PI + + S + +QI TL
Sbjct: 285 -DSTDE---------GDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTL 334
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
FV+QG + R IG F+IPPA+L F T S+LI V +YDR V ++RR+T +G T LQ
Sbjct: 335 FVQQGRCMKRTIGL-FEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQ 393
Query: 301 RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFL 360
RMGIGL + ++ + A+ E RL +A+D +VE G VPL IF +PQ+ LMGTA F
Sbjct: 394 RMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFF 453
Query: 361 EVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWI-LNNL 419
V +IEFFY+Q+P++M+SL +++++ T +GN+ S+ +++ V+ ++ G WI +N+
Sbjct: 454 FVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS---GKDCWIPSDNI 510
Query: 420 NVSHLDYYYAFFAILNVLN---FVFFLV 444
N HLDY++ L +N FVFF V
Sbjct: 511 NNGHLDYFFWLLVSLGSVNIPVFVFFSV 538
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| 224107477 | 589 | predicted protein [Populus trichocarpa] | 0.985 | 0.806 | 0.804 | 0.0 | |
| 225433219 | 592 | PREDICTED: peptide transporter PTR3-A [V | 0.991 | 0.807 | 0.782 | 0.0 | |
| 147806162 | 586 | hypothetical protein VITISV_015576 [Viti | 0.956 | 0.786 | 0.803 | 0.0 | |
| 357441053 | 593 | Peptide transporter PTR3-A [Medicago tru | 0.966 | 0.785 | 0.771 | 0.0 | |
| 255575829 | 564 | oligopeptide transporter, putative [Rici | 0.991 | 0.847 | 0.782 | 0.0 | |
| 224099963 | 547 | predicted protein [Populus trichocarpa] | 0.898 | 0.791 | 0.815 | 0.0 | |
| 356533306 | 590 | PREDICTED: peptide transporter PTR3-A-li | 0.966 | 0.789 | 0.758 | 0.0 | |
| 356501795 | 635 | PREDICTED: peptide transporter PTR3-A-li | 0.966 | 0.733 | 0.756 | 0.0 | |
| 356576503 | 594 | PREDICTED: peptide transporter PTR3-A-li | 0.966 | 0.784 | 0.756 | 0.0 | |
| 449458852 | 592 | PREDICTED: peptide transporter PTR3-A-li | 0.985 | 0.802 | 0.716 | 0.0 |
| >gi|224107477|ref|XP_002314492.1| predicted protein [Populus trichocarpa] gi|222863532|gb|EEF00663.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/476 (80%), Positives = 430/476 (90%), Gaps = 1/476 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLSVSLP L+PP CK+ N ++CK+ASTLQL +FF ALYTLA+GTGGTKPNISTIGA
Sbjct: 111 MSLLTLSVSLPALRPPICKNANVENCKEASTLQLAVFFGALYTLAIGTGGTKPNISTIGA 170
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F PKEKA+KLSFFNWWMFSIFFG LFANT+LVYIQDN+GW LGYGLPTLGL IS+
Sbjct: 171 DQFDDFHPKEKAYKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWALGYGLPTLGLVISV 230
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
AIF AGTPFYRH++PTGSPFTRMAKVIVAA+RKW V +P +PKEL+ELDLE+YA+ K+
Sbjct: 231 AIFLAGTPFYRHRQPTGSPFTRMAKVIVAALRKWKVSVPNDPKELHELDLEEYAKAGKFR 290
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
IDST LRF NKAAVKT ST+PWMLCSVTQVEETKQML MIPIL++TFVPSTM+AQINTL
Sbjct: 291 IDSTPTLRFLNKAAVKTGSTDPWMLCSVTQVEETKQMLRMIPILISTFVPSTMIAQINTL 350
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
FVKQGTTLDR IG +F++PPASL GFVTLSML+CVVLYDR+FV+I+RRWTKNPRGITLLQ
Sbjct: 351 FVKQGTTLDRQIG-NFEVPPASLAGFVTLSMLVCVVLYDRFFVRIVRRWTKNPRGITLLQ 409
Query: 301 RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFL 360
RMGIGLV HIIIM+ AS ER+RLSVA+ H +VEKG QVPLTIF+LLPQFVLMG ADAFL
Sbjct: 410 RMGIGLVFHIIIMITASLIERHRLSVARQHGLVEKGGQVPLTIFILLPQFVLMGAADAFL 469
Query: 361 EVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420
EVAK+EFFYDQAPE+MKSLGTSYS T+LGVGNF S+FLLSTVS+ITK+HGH+GWILNNLN
Sbjct: 470 EVAKLEFFYDQAPESMKSLGTSYSTTSLGVGNFISSFLLSTVSHITKKHGHRGWILNNLN 529
Query: 421 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKVMRSRASAQ 476
SHLDYYYAFFAILN LNF+FFL V +FYVYKAEVSDSMEVL EELK MR R Q
Sbjct: 530 ASHLDYYYAFFAILNFLNFIFFLGVIRFYVYKAEVSDSMEVLAEELKAMRLREPNQ 585
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433219|ref|XP_002285402.1| PREDICTED: peptide transporter PTR3-A [Vitis vinifera] gi|296083701|emb|CBI23690.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/479 (78%), Positives = 422/479 (88%), Gaps = 1/479 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LT++VS+PGLKPP C + DCKKASTLQL +FF ALYTLAVGTGGTKPNISTIGA
Sbjct: 113 MSLLTVAVSVPGLKPPRCVATDMADCKKASTLQLAVFFGALYTLAVGTGGTKPNISTIGA 172
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F+PKEK HKLSFFNWWMFSIFFG LFANT+LVYIQDN+GWTLGYGLPT GL+ISI
Sbjct: 173 DQFDDFDPKEKGHKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWTLGYGLPTAGLAISI 232
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF AGTPFYRH+ P+GSPFTRMAKVI+AA+RKW P+PT+PKELYELDLE+YA+K K+
Sbjct: 233 VIFLAGTPFYRHRVPSGSPFTRMAKVIIAALRKWKTPVPTDPKELYELDLEEYAKKGKFR 292
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
IDST LRF NKA VKT S +PWMLCSVTQVEETKQML MIPIL+ATFVPSTM+AQINTL
Sbjct: 293 IDSTPTLRFLNKACVKTGSKDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINTL 352
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
FVKQGTTLDR IG SF IPPASL GFVTLSML+ VVLYDR+FV I RR TKNPRGITLLQ
Sbjct: 353 FVKQGTTLDRGIG-SFNIPPASLTGFVTLSMLVSVVLYDRFFVTITRRLTKNPRGITLLQ 411
Query: 301 RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFL 360
RMGIGLV HI IM++AS ER RLSVAKDH +VE G QVPL+I +LLPQF+LMGTADAFL
Sbjct: 412 RMGIGLVFHIFIMMVASLVERRRLSVAKDHGVVESGGQVPLSILILLPQFILMGTADAFL 471
Query: 361 EVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420
EVAKIEFFYDQAPE+MKSLGTSYSMT+LG+GNF S+FLL+TVS+ITK+HGH GWILNNLN
Sbjct: 472 EVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFLSSFLLTTVSHITKKHGHHGWILNNLN 531
Query: 421 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKVMRSRASAQEAT 479
SHLDYYYAFFAILN LNF+FF+VV K+YVYKAEV+DSMEVL +L+ + + QE +
Sbjct: 532 ASHLDYYYAFFAILNFLNFIFFIVVTKYYVYKAEVTDSMEVLEGQLRGLTPAVTNQEES 590
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147806162|emb|CAN63331.1| hypothetical protein VITISV_015576 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/462 (80%), Positives = 415/462 (89%), Gaps = 1/462 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LT++VS+PGLKPP C + DCKKASTLQL +FF ALYTLAVGTGGTKPNISTIGA
Sbjct: 113 MSLLTVAVSVPGLKPPRCVATDMADCKKASTLQLAVFFGALYTLAVGTGGTKPNISTIGA 172
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F+PKEK HKLSFFNWWMFSIFFG LFANT+LVYIQDN+GWTLGYGLPT GL+ISI
Sbjct: 173 DQFDDFDPKEKGHKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWTLGYGLPTAGLAISI 232
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF AGTPFYRH+ P+GSPFTRMAKVI+AA+RKW P+PT+PKELYELDLE+Y +K K+
Sbjct: 233 MIFLAGTPFYRHRVPSGSPFTRMAKVIIAALRKWKTPVPTDPKELYELDLEEYGKKGKFR 292
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
IDST LRF NKA VKT S +PWMLCSVTQVEETKQML MIPIL+ATFVPSTM+AQINTL
Sbjct: 293 IDSTPTLRFLNKACVKTGSKDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINTL 352
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
FVKQGTTLDR IG SF IPPASL GFVT+SML+ VVLYDR+FV IMRR TKNPRGITLLQ
Sbjct: 353 FVKQGTTLDRGIG-SFNIPPASLTGFVTISMLVSVVLYDRFFVTIMRRLTKNPRGITLLQ 411
Query: 301 RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFL 360
RMGIGLV HI+IM++AS ER RLSVAKDH +VE G QVPL+I +LLPQF+LMGTADAFL
Sbjct: 412 RMGIGLVFHIVIMMVASLVERRRLSVAKDHGVVESGGQVPLSILILLPQFILMGTADAFL 471
Query: 361 EVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420
EVAKIEFFYDQAPE+MKSLGTSYSMT+LG+GNF S+FLL+TVS+ITK+HGH GWILNNLN
Sbjct: 472 EVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFLSSFLLTTVSHITKKHGHHGWILNNLN 531
Query: 421 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVL 462
SHLDYYYAFFAILN LNF+FF+VV K+YVYKAEV+DSMEVL
Sbjct: 532 ASHLDYYYAFFAILNFLNFIFFIVVTKYYVYKAEVTDSMEVL 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441053|ref|XP_003590804.1| Peptide transporter PTR3-A [Medicago truncatula] gi|355479852|gb|AES61055.1| Peptide transporter PTR3-A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/469 (77%), Positives = 412/469 (87%), Gaps = 3/469 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTL+VSLP LKPP C +++ CKK STLQL +F+ ALYTLA+GTGGTKPNISTIGA
Sbjct: 114 MSLLTLAVSLPTLKPPECHELDVTKCKKLSTLQLAVFYGALYTLAIGTGGTKPNISTIGA 173
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F PKEK+HKLSFFNWWMFSIFFG LFANTVLVYIQDN+GWTLGY LPTLGL+ISI
Sbjct: 174 DQFDDFHPKEKSHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYALPTLGLAISI 233
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWK-- 178
IF GTPFYRHK P GS FTRMA+VIVA++RKW VP+P + K+LYELD+E+YA+K
Sbjct: 234 MIFLGGTPFYRHKLPAGSTFTRMARVIVASLRKWKVPVPDDTKKLYELDMEEYAKKGSNT 293
Query: 179 YMIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQIN 238
Y IDST LRF +KA+VKT ST+PWMLC+VT VEETKQML MIPILVATFVPSTM+AQ+N
Sbjct: 294 YRIDSTPTLRFLDKASVKTGSTSPWMLCTVTHVEETKQMLRMIPILVATFVPSTMMAQVN 353
Query: 239 TLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITL 298
TLFVKQGTTLDR IGS FKIPPASL FVTLS+L+CVVLYDR+FV+IM+R TKNPRGITL
Sbjct: 354 TLFVKQGTTLDRHIGS-FKIPPASLAAFVTLSLLVCVVLYDRFFVRIMQRLTKNPRGITL 412
Query: 299 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADA 358
LQRMGIGLV+H IIMV+AS TE YRL VAK+H +VE G QVPL+IF+LLPQF+LMGTADA
Sbjct: 413 LQRMGIGLVLHTIIMVVASVTENYRLRVAKEHGLVESGGQVPLSIFILLPQFILMGTADA 472
Query: 359 FLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNN 418
FLEVAKIEFFYDQAPE+MKS+GTSYS TTLGVGNF S+FLLSTVS+IT+ HGHKGWILNN
Sbjct: 473 FLEVAKIEFFYDQAPESMKSIGTSYSSTTLGVGNFISSFLLSTVSHITQEHGHKGWILNN 532
Query: 419 LNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELK 467
LN SHLDYYYAFFA+LN LN FF V +FYVY+AEVSDS+++L ELK
Sbjct: 533 LNDSHLDYYYAFFAVLNFLNLAFFAFVTRFYVYRAEVSDSIDMLANELK 581
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575829|ref|XP_002528812.1| oligopeptide transporter, putative [Ricinus communis] gi|223531724|gb|EEF33546.1| oligopeptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/479 (78%), Positives = 421/479 (87%), Gaps = 1/479 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M VLTLSVSLP L+PP CK+ N DC+KAS LQL +FF ALYTLA+GTGGTKPNISTIGA
Sbjct: 82 MSVLTLSVSLPALRPPPCKEANVDDCRKASPLQLAVFFGALYTLAIGTGGTKPNISTIGA 141
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F+PKEK HKLSFFNWWMFSIFFG LFANTVLVYIQDN+GW LGYGLPTLGL ISI
Sbjct: 142 DQFDDFDPKEKDHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWALGYGLPTLGLLISI 201
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
+IF AGTP+YRHK P GSPFTRMA IVAAIRK +P+P +PKELYELDLE+YA+ K+
Sbjct: 202 SIFLAGTPYYRHKIPAGSPFTRMAMAIVAAIRKIKMPIPNDPKELYELDLEEYARNGKFR 261
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
IDST LRF NKAAV+T ST+PWMLCSVTQVEETKQML MIP+L+ATFVPSTM+AQI+TL
Sbjct: 262 IDSTPGLRFLNKAAVRTGSTDPWMLCSVTQVEETKQMLRMIPVLIATFVPSTMIAQISTL 321
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
FVKQGTTLDR IG SFKIPPASL GFVT++MLI VVLYDR+FV+I R+ T NPRG+TLLQ
Sbjct: 322 FVKQGTTLDRNIG-SFKIPPASLSGFVTIAMLISVVLYDRFFVRITRKLTNNPRGVTLLQ 380
Query: 301 RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFL 360
RMGIG+V HIIIM+IAS ERYRLSVAK+H +VE G QVPLTIF+LLPQFVLMG ADAFL
Sbjct: 381 RMGIGIVFHIIIMIIASLIERYRLSVAKEHGLVENGGQVPLTIFILLPQFVLMGMADAFL 440
Query: 361 EVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420
EVAK+EFFYDQAPE+MKSLGTSYS T+LG+GNF S+FLLSTVS +T ++GH+GWILNNLN
Sbjct: 441 EVAKLEFFYDQAPESMKSLGTSYSTTSLGIGNFLSSFLLSTVSRLTSKNGHQGWILNNLN 500
Query: 421 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKVMRSRASAQEAT 479
SHLDYYYAFFAILN NF+FFLVV KFYVYKAE SDSMEVL E+LK MR +A QE +
Sbjct: 501 ASHLDYYYAFFAILNFFNFLFFLVVIKFYVYKAEASDSMEVLAEQLKGMRLQAPNQEVS 559
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099963|ref|XP_002311689.1| predicted protein [Populus trichocarpa] gi|222851509|gb|EEE89056.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/434 (81%), Positives = 393/434 (90%), Gaps = 1/434 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLSVSLP L+PP CKD NS +C+KAST+QL +FF ALYTLAVGTGGTKPNISTIGA
Sbjct: 115 MSLLTLSVSLPALRPPPCKDANSDNCRKASTMQLAVFFGALYTLAVGTGGTKPNISTIGA 174
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F PKEKAHKLSFFNWWMFSIFFG LFANTVLVYIQDN+GW LGYGLPTLGL IS+
Sbjct: 175 DQFDDFHPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWALGYGLPTLGLLISV 234
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
AIF AGTP+YRH+ PTGSPFTRMAKVIVAA+RK V +P++PKELYELDLE+YA+ K+
Sbjct: 235 AIFLAGTPYYRHRLPTGSPFTRMAKVIVAALRKSKVSVPSDPKELYELDLEEYAKGGKFR 294
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
IDST LRF KAAVKT T+PWMLCSVTQVEETKQML MIPIL+ATFVPSTM+AQINTL
Sbjct: 295 IDSTPTLRFLTKAAVKTGRTDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINTL 354
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
FVKQGTTLDR IG SFKIPPASL+GFVTLSML+CVVLYDR+FV I RRWTKNPRGITLLQ
Sbjct: 355 FVKQGTTLDRNIG-SFKIPPASLVGFVTLSMLVCVVLYDRFFVSIARRWTKNPRGITLLQ 413
Query: 301 RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFL 360
RMGIGLV HIIIM+ AS ER+RLSVA++H +VE G Q+PLTIF+LLPQFVLMG ADAFL
Sbjct: 414 RMGIGLVFHIIIMIAASLIERHRLSVAREHGLVENGGQIPLTIFILLPQFVLMGVADAFL 473
Query: 361 EVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420
EVAK+EFFYDQAPE+MKSLGTSYS T+LG+GNF S+FLLSTVS+ITK+HGH+GWILNNLN
Sbjct: 474 EVAKLEFFYDQAPESMKSLGTSYSTTSLGIGNFLSSFLLSTVSDITKKHGHRGWILNNLN 533
Query: 421 VSHLDYYYAFFAIL 434
SHLDYYYAFFAIL
Sbjct: 534 ASHLDYYYAFFAIL 547
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533306|ref|XP_003535206.1| PREDICTED: peptide transporter PTR3-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/468 (75%), Positives = 409/468 (87%), Gaps = 2/468 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLSVSLP LKPP C +++ C+KASTL L +F+ ALYTLA+GTGGTKPNISTIGA
Sbjct: 113 MSLLTLSVSLPSLKPPECHELDVTKCEKASTLHLAVFYGALYTLALGTGGTKPNISTIGA 172
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F+ KEK KLSFFNWWMFSIF G LFAN+VLVYIQDN+GWTLGY LPTLGL+ISI
Sbjct: 173 DQFDDFDSKEKKLKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAISI 232
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF AGTPFYRHK PTGSPFT+MAKVIVAAIRKW V +P++ KELYELDLE+YA++ +
Sbjct: 233 IIFLAGTPFYRHKLPTGSPFTKMAKVIVAAIRKWKVHIPSDTKELYELDLEEYAKRGRVR 292
Query: 181 IDSTQNLRFFNKAAVKT-SSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINT 239
IDST LRF NKA V T SST+ W L VT VEETKQML MIPIL AT +PS M+AQI T
Sbjct: 293 IDSTPTLRFLNKACVNTDSSTSGWKLSPVTHVEETKQMLRMIPILAATLIPSAMVAQIGT 352
Query: 240 LFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLL 299
LFVKQG TLDR IGS F IPPASL FVTLSML+CVVLYDR+FVKIM+R+TKNPRGITLL
Sbjct: 353 LFVKQGITLDRGIGS-FNIPPASLATFVTLSMLVCVVLYDRFFVKIMQRFTKNPRGITLL 411
Query: 300 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAF 359
QR+GIGL+IHI+IMVIAS TERYRL VAK+H ++E G QVPL+IF+LLPQ+VLMG ADAF
Sbjct: 412 QRIGIGLIIHIVIMVIASLTERYRLRVAKEHGLLENGGQVPLSIFILLPQYVLMGAADAF 471
Query: 360 LEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419
+EVAKIEFFYDQAPE+MKSLGTSYSMTTLG+GNF STFLL+T+S++TK+HGH+GW+LNNL
Sbjct: 472 VEVAKIEFFYDQAPESMKSLGTSYSMTTLGIGNFLSTFLLTTISHVTKKHGHRGWVLNNL 531
Query: 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELK 467
N SHLDYYYA AILN++NFVFF+VV KFYVY+AE+SDS++VL EELK
Sbjct: 532 NASHLDYYYALLAILNLVNFVFFMVVTKFYVYRAEISDSIKVLEEELK 579
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501795|ref|XP_003519709.1| PREDICTED: peptide transporter PTR3-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/468 (75%), Positives = 407/468 (86%), Gaps = 2/468 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLSVSLP LKPP C +++ C+KAS L L +F+ ALYTLA+GTGGTKPNISTIGA
Sbjct: 113 MSLLTLSVSLPSLKPPECHELDVTKCEKASILHLAVFYGALYTLALGTGGTKPNISTIGA 172
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F+ KEK KLSFFNWWMFSIF G LFAN+VLVYIQDN+GWTLGY LPTLGL+ISI
Sbjct: 173 DQFDDFDSKEKKLKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAISI 232
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF AGTPFYRHK PTGSPFT+MAKVIVAAIRKW V +P++ KELYELDLE+YA+K +
Sbjct: 233 IIFLAGTPFYRHKLPTGSPFTKMAKVIVAAIRKWKVHIPSDTKELYELDLEEYAKKGRVR 292
Query: 181 IDSTQNLRFFNKAAVKT-SSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINT 239
IDST LR NKA V T S+T+ WML VT VEETKQML MIPIL AT +PS M+AQI T
Sbjct: 293 IDSTPTLRLLNKACVNTDSTTSGWMLSPVTHVEETKQMLRMIPILAATLIPSAMVAQIGT 352
Query: 240 LFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLL 299
LFVKQG TLDR IGS F IPPASL FVTLSML+CVVLYDR+FVKIM+R+TKNPRGITLL
Sbjct: 353 LFVKQGITLDRGIGS-FNIPPASLATFVTLSMLVCVVLYDRFFVKIMQRFTKNPRGITLL 411
Query: 300 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAF 359
QR+GIGL+IHI+IMV+AS TERYRL VAK+H +VE G QVPL+IF+LLPQ+VLMG ADAF
Sbjct: 412 QRIGIGLIIHIVIMVVASLTERYRLRVAKEHGLVENGGQVPLSIFILLPQYVLMGAADAF 471
Query: 360 LEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419
+EVAKIEFFYDQAPE+MKSLGTSYSMTTLG+GNF STFLL+T+S++TK+HGH+GW+LNNL
Sbjct: 472 VEVAKIEFFYDQAPESMKSLGTSYSMTTLGIGNFLSTFLLTTISHVTKKHGHRGWVLNNL 531
Query: 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELK 467
N SHLDYYYA AILN LNF+FF+VV KFYVY+AE+SDS++VL EELK
Sbjct: 532 NASHLDYYYALLAILNFLNFIFFMVVTKFYVYRAEISDSIKVLEEELK 579
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576503|ref|XP_003556370.1| PREDICTED: peptide transporter PTR3-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/468 (75%), Positives = 408/468 (87%), Gaps = 2/468 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTL+VSLP LKPP C + C KASTLQL +F+ ALYTLAVGTGGTKPNISTIGA
Sbjct: 116 MSLLTLAVSLPSLKPPQCFVKDVTKCAKASTLQLAVFYGALYTLAVGTGGTKPNISTIGA 175
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F PKEK HKLSFFNWWMFSIFFG LFAN+VLVYIQDN+GWTLGY LPTLGL +SI
Sbjct: 176 DQFDDFHPKEKLHKLSFFNWWMFSIFFGTLFANSVLVYIQDNVGWTLGYALPTLGLLVSI 235
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF AGTPFYRHK P GS FTRMA+V+VAA+RK VP+P++ KELYELD E+YA+K Y
Sbjct: 236 MIFVAGTPFYRHKVPAGSTFTRMARVVVAALRKSKVPVPSDSKELYELDKEEYAKKGSYR 295
Query: 181 IDSTQNLRFFNKAAVKT-SSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINT 239
ID T L+F +KA VKT S+T+ W LC+VTQVEETKQM+ MIPILVATFVPSTM+AQINT
Sbjct: 296 IDHTPTLKFLDKACVKTDSNTSAWTLCTVTQVEETKQMIRMIPILVATFVPSTMMAQINT 355
Query: 240 LFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLL 299
LFVKQGTTLDR +GS FKIPPASL FVT+S+L+C+VLYDR+FVKIM+R+TKNPRGITLL
Sbjct: 356 LFVKQGTTLDRHLGS-FKIPPASLAAFVTVSLLVCIVLYDRFFVKIMQRFTKNPRGITLL 414
Query: 300 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAF 359
QRMGIGLVIH +IM+IAS TE YRL VA++H +VE G QVPL+IF+LLPQF+LMGTADAF
Sbjct: 415 QRMGIGLVIHTLIMIIASGTESYRLKVAREHGVVESGGQVPLSIFILLPQFILMGTADAF 474
Query: 360 LEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419
LEVAKIEFFYDQ+PE+MKS+GTSYS TTLG+GNF S+FLLSTVSN+TK++GHKGWILNNL
Sbjct: 475 LEVAKIEFFYDQSPEHMKSIGTSYSTTTLGLGNFISSFLLSTVSNVTKKNGHKGWILNNL 534
Query: 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELK 467
N SHLDYYYAFFAILN LN +FF V +FYVY+ EVSDS++ L +ELK
Sbjct: 535 NESHLDYYYAFFAILNFLNLIFFAYVTRFYVYRVEVSDSIDKLAKELK 582
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458852|ref|XP_004147160.1| PREDICTED: peptide transporter PTR3-A-like [Cucumis sativus] gi|449498602|ref|XP_004160581.1| PREDICTED: peptide transporter PTR3-A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/479 (71%), Positives = 415/479 (86%), Gaps = 4/479 (0%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LT++VSLP L+PP C D S C+KAS+LQL ++F ALY LA+GTGGTKPNISTIGA
Sbjct: 114 MSLLTMAVSLPTLRPPPCADPTSGHCEKASSLQLAVYFGALYILAIGTGGTKPNISTIGA 173
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+F PKEK KLSFFNWWMFSIFFG LFAN +LVYIQDN+GWTLGYGLPTLGL+ISI
Sbjct: 174 DQFDDFHPKEKKQKLSFFNWWMFSIFFGTLFANIILVYIQDNIGWTLGYGLPTLGLAISI 233
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF AG PFYRHK P GSPF+RM KV+VAAIRK +PLP + KELYELDLE+Y +K K+
Sbjct: 234 GIFVAGIPFYRHKVPAGSPFSRMGKVLVAAIRKRKLPLPRDVKELYELDLEEYTKKRKFR 293
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
+++T +L F NKA++KT ST+PW LC+VT+VEETKQM+ MIPIL ATFVPS MLAQ+NTL
Sbjct: 294 MEATPSLSFLNKASIKTGSTHPWRLCTVTEVEETKQMIRMIPILFATFVPSIMLAQVNTL 353
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
F+KQGTTL+R IG +F+IPPASL GFVT+S+LI + LYDR FVKIMR++TKNPRGITLLQ
Sbjct: 354 FIKQGTTLNRKIG-NFEIPPASLSGFVTVSLLISIGLYDRVFVKIMRKFTKNPRGITLLQ 412
Query: 301 RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFL 360
RMGIG+V+H++IMV+ S ER RL+VAK+H +V+ G QVPL+IF+LLPQF+LMGTADAF+
Sbjct: 413 RMGIGIVLHMLIMVVCSLVERRRLAVAKEHGVVQSGAQVPLSIFILLPQFILMGTADAFM 472
Query: 361 EVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420
EV+KIEFFYDQAPE+MKSLGTSYS T +G GNF S+FLLSTV+N+T+R+G KGWILNNLN
Sbjct: 473 EVSKIEFFYDQAPESMKSLGTSYSTTAIGTGNFLSSFLLSTVANLTRRNGRKGWILNNLN 532
Query: 421 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAEVSDSMEVLTEELKVMRSRASAQEAT 479
SHLDYYY FFAILN LNF+FFLVV+++YVYKAEVSDS+ +LTEELK +A ++E++
Sbjct: 533 ASHLDYYYGFFAILNFLNFIFFLVVSRYYVYKAEVSDSIRLLTEELK---EKAPSKESS 588
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.966 | 0.800 | 0.662 | 3e-165 | |
| TAIR|locus:2161428 | 586 | AT5G46040 [Arabidopsis thalian | 0.962 | 0.791 | 0.609 | 2e-152 | |
| TAIR|locus:2061843 | 583 | AT2G40460 [Arabidopsis thalian | 0.937 | 0.775 | 0.496 | 5.8e-114 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.933 | 0.789 | 0.432 | 9.4e-98 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.925 | 0.782 | 0.424 | 2.4e-92 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.869 | 0.710 | 0.425 | 6.3e-92 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.887 | 0.731 | 0.416 | 2.7e-91 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.470 | 0.416 | 0.426 | 1.9e-87 | |
| TAIR|locus:1006230253 | 555 | AT3G54450 [Arabidopsis thalian | 0.863 | 0.749 | 0.404 | 1.9e-83 | |
| TAIR|locus:2084500 | 602 | AT3G53960 [Arabidopsis thalian | 0.939 | 0.752 | 0.384 | 3.9e-83 |
| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 310/468 (66%), Positives = 366/468 (78%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M+VLTLSV++PG+KPP C N ++C+KAS LQL +FF ALYTLA+GTGGTKPNISTIGA
Sbjct: 113 MMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGA 172
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD F+PKEK KLSFFNWWMFSIFFG LFANTVLVY+QDN+GWTLGYGLPTLGL+ISI
Sbjct: 173 DQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISI 232
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF GTPFYRHK PTGSPFT+MA+VIVA+ RK N P+ + +EL +Y +K +
Sbjct: 233 TIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFP 292
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
I T +LRF ++A++KT + + W LC+ T+VEETKQML M+P+L TFVPS MLAQINTL
Sbjct: 293 IHPTPSLRFLDRASLKTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTL 352
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
FVKQGTTLDR + SF IPPASL GFVTLSMLI +VLYDR FVKI R++T NPRGITLLQ
Sbjct: 353 FVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQ 412
Query: 301 RXXXXXXXXXXXXXXASFTERYRLSVAKDHSIVEK-GQQVPLTIFVLLPQFVLMGTADAF 359
R AS TERYRL VA DH ++ + G ++PLTIF LLPQFVLMG AD+F
Sbjct: 413 RMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSF 472
Query: 360 LEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419
LEVAK+EFFYDQAPE+MKSLGTSYS T+L +GNF S+FLLSTVS ITK+ G +GWILNNL
Sbjct: 473 LEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRG-RGWILNNL 531
Query: 420 NVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKAEVSDSMEVLTEELK 467
N S LDYYY FFA+ KFYVY+AEV+DS++V E+K
Sbjct: 532 NESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579
|
|
| TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
Identities = 284/466 (60%), Positives = 348/466 (74%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLSVSLPGLKPP C N ++C+KAS +QL +FF ALYTLA+GTGGTKPNISTIGA
Sbjct: 113 MALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGA 172
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFDEF+PK+K HK SFFNWWMFSIFFG FA TVLVY+QDN+GW +GYGL TLGL+ SI
Sbjct: 173 DQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSI 232
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF GT YRHK P GSPFT+MA+VIVA++RK P+ ++ YEL +YA K +
Sbjct: 233 FIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFP 292
Query: 181 IDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTL 240
I ST +LRF N+A++KT ST+ W LC++T+VEETKQML M+P+L TFVPS MLAQI TL
Sbjct: 293 IHSTSSLRFLNRASLKTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTL 352
Query: 241 FVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQ 300
F+KQGTTLDR + ++F IPPASL+GF T SML+ +V+YDR FVK MR+ T NPRGITLLQ
Sbjct: 353 FIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQ 412
Query: 301 RXXXXXXXXXXXXXXASFTERYRLSVAKDHSIVEK-GQQVPLTIFVLLPQFVLMGTADAF 359
R AS TERYRL VA +H + + +PL+IF LLPQ+VLMG ADAF
Sbjct: 413 RMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAF 472
Query: 360 LEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419
+E+AK+EFFYDQAPE+MKSLGTSY+ T++ VG F S+ LLS+VS ITK+ G +GWI NNL
Sbjct: 473 IEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQG-RGWIQNNL 531
Query: 420 NVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKAEVSDSMEVLTEE 465
N S LD YY FFA+ +FY Y+A+V+ S V +E
Sbjct: 532 NESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKE 577
|
|
| TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 229/461 (49%), Positives = 304/461 (65%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
MI+LT++V++ L+P C+ N C KAS+LQ+ F+ +LYT+A+G GGTKPNIST GA
Sbjct: 110 MILLTMAVTVKSLRP-TCE--NGV-CNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGA 165
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD + +EK K+SFFNWWMFS F GALFA LVYIQ+N+GW LGYG+PT+GL +S+
Sbjct: 166 DQFDSYSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSL 225
Query: 121 AIFFAGTPFYRHKK-PTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKY 179
+F+ GTPFYRHK T + + +V +AA + + P + ELYELD Y K+
Sbjct: 226 VVFYIGTPFYRHKVIKTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKH 285
Query: 180 MIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINT 239
+ T RF +KAA+KTSS P C+VT+VE K++L +I I + T +PST+ AQ+NT
Sbjct: 286 QVHHTPVFRFLDKAAIKTSSRVP---CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNT 342
Query: 240 LFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLL 299
LFVKQGTTLDR IGS+F+IP ASL FVTLSML+ V +YD+ FV MR+ T NPRGITLL
Sbjct: 343 LFVKQGTTLDRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLL 402
Query: 300 QRXXXXXXXXXXXXXXASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAF 359
QR AS E R+ V K+ I Q VP++IF LLPQ+ L+G D F
Sbjct: 403 QRLGVGFAIQIVAIAIASAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVF 462
Query: 360 LEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419
+ +EFFYDQ+PE M+SLGT++ + +G+GNF ++FL++ + IT + G K WI NNL
Sbjct: 463 NAIGLLEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNL 522
Query: 420 NVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKAEVSDSME 460
N S LDYYY F + A YVYK++ D+ E
Sbjct: 523 NDSRLDYYYGFLVVISIVNMGLFVWAASKYVYKSD-DDTKE 562
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 200/462 (43%), Positives = 292/462 (63%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLS S+PGLKP C N+ C S+ Q +FF ALY +A+GTGG KP +S+ GA
Sbjct: 110 MTLLTLSASVPGLKPGNC---NADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGA 165
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFDE + EK K SFFNW+ FSI GAL A TVLV+IQ N+GW G+G+PT+ + I++
Sbjct: 166 DQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAV 225
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
FF G+ FYR ++P GSP TR+ +VIVAA RK +V +P + L+E ++ K
Sbjct: 226 CFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRK 285
Query: 181 IDSTQNLRFFNKAAVKTSS-------TNPWMLCSVTQVEETKQMLAMIPILVATFVPSTM 233
+ T NL+FF+KAAV++ S NPW LCSVTQVEE K ++ ++P+ V +T+
Sbjct: 286 LVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATV 345
Query: 234 LAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNP 293
+Q++T+FV QG T+D+ +G +F+IP ASL F T+S+L +YD++ + + R++T+N
Sbjct: 346 YSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNE 405
Query: 294 RGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353
RG T LQR A E RL K H+ ++ +Q+ ++IF +PQ++L+
Sbjct: 406 RGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQ-KQIHMSIFWQIPQYLLI 464
Query: 354 GTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413
G A+ F + ++EFFYDQAP+ M+SL ++ S+TT+ +GN+ ST L++ V ITK++G G
Sbjct: 465 GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPG 524
Query: 414 WILNNLNVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKAEV 455
WI +NLN HLDY++ A +K Y YK V
Sbjct: 525 WIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAV 566
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
Identities = 195/459 (42%), Positives = 282/459 (61%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LT+S S+PGL P C + + C A+ Q I F ALY +A+GTGG KP +S+ GA
Sbjct: 111 MTLLTISASVPGLTP-TC---SGETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGA 165
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+ + KEK K SFFNW+ F I GA+ A++VLV+IQ N+GW G G+PT+ ++I++
Sbjct: 166 DQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAV 225
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
FFAG+ FYR +KP GSP TRM +VIVA+ RK V +P + LYE + +
Sbjct: 226 VFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRK 285
Query: 181 IDSTQNLRFFNKAAVKTSSTNP-------WMLCSVTQVEETKQMLAMIPILVATFVPSTM 233
++ T+ L FF+KAAV+T S N W LC+VTQVEE K ++ ++PI V +++
Sbjct: 286 LEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASV 345
Query: 234 LAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNP 293
+Q+ T+FV QG TLD+ +G +FKIP ASL F TLS+L +YD+ V R++T +
Sbjct: 346 YSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHE 405
Query: 294 RGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353
RG T LQR A E RL+ + H++ + + +P+TIF +PQ+ L+
Sbjct: 406 RGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE-ETIPMTIFWQVPQYFLV 464
Query: 354 GTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413
G A+ F + ++EFFYDQAP+ M+SL ++ S+T + GN+ STFL++ V+ +T+ G G
Sbjct: 465 GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPG 524
Query: 414 WILNNLNVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYK 452
WI NLN HLDY++ A AK+Y YK
Sbjct: 525 WIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 185/435 (42%), Positives = 278/435 (63%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M +LTLS SLP LKP AC + + C A+T+Q +FF LY +A+GTGG KP +S+ GA
Sbjct: 138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+ +P+E+ K SFFNW+ FSI G+ ++T+LV++Q+N+GW LG+ +PT+ + +SI
Sbjct: 198 DQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSI 257
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
A FF GTP YR +KP GSP TR+ +V+VAA RK + LP + LYE ++
Sbjct: 258 ASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRK 317
Query: 181 IDSTQNLRFFNKAAV------KTSS-TNPWMLCSVTQVEETKQMLAMIPILVATFVPSTM 233
I T +F +KAAV K+ + +NPW LC+VTQVEE K ++ M PI + V S +
Sbjct: 318 IQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVL 377
Query: 234 LAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNP 293
+QI+TLFV+QG +++R I SF+IPPAS F TL +LI + +YDR+ V +RR+T P
Sbjct: 378 YSQISTLFVQQGRSMNRII-RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIP 436
Query: 294 RGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353
+G+T LQR A+ E RL +A+D V ++IF +PQ++LM
Sbjct: 437 KGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDF--------VAMSIFWQIPQYILM 488
Query: 354 GTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413
G A+ F + ++EFFYD++P+ M+S+ ++ ++ VG++ S+ +L+ V+ T G G
Sbjct: 489 GIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDG 548
Query: 414 WILNNLNVSHLDYYY 428
W+ ++LN HLDY++
Sbjct: 549 WVPDDLNKGHLDYFF 563
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
Identities = 183/439 (41%), Positives = 280/439 (63%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
M LTLS S+P LKP C C A+ Q +FF LY +A+GTGG KP +S+ GA
Sbjct: 127 MSALTLSASVPALKPAECI---GDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGA 183
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFD+ + +E+ K SFFNW+ FSI GAL ++++LV+IQ+N GW LG+G+PT+ + ++I
Sbjct: 184 DQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAI 243
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
A FF GTP YR +KP GSP TR+++V+VA+ RK +V +P + LYE ++ A
Sbjct: 244 ASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRK 303
Query: 181 IDSTQNLRFFNKAAV------KTSS-TNPWMLCSVTQVEETKQMLAMIPILVATFVPSTM 233
I+ T + ++ +KAAV K+ +N W LC+VTQVEE K ++ M PI + + S +
Sbjct: 304 IEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAV 363
Query: 234 LAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNP 293
AQ++T+FV+QG ++ IGS F++PPA+L F T S++I V LYDR+ V + R++T
Sbjct: 364 YAQMSTMFVQQGRAMNCKIGS-FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVD 422
Query: 294 RGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353
+G T +QR A+ E RL +A D +VE G VP+++ +PQ+ ++
Sbjct: 423 KGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFIL 482
Query: 354 GTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413
G A+ F + ++EFFYDQ+P+ M+SL ++ ++ T +GN+ S+ +L+ V+ T R+G +G
Sbjct: 483 GAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEG 542
Query: 414 WILNNLNVSHLDYYYAFFA 432
WI +NLN HLDY++ A
Sbjct: 543 WISDNLNSGHLDYFFWLLA 561
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 99/232 (42%), Positives = 149/232 (64%)
Query: 198 SSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFK 257
++TNPW LC+VTQVEE K +L ++PI + + S + +QI TLFV+QG + R IG F+
Sbjct: 292 ANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGL-FE 350
Query: 258 IPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRXXXXXXXXXXXXXXAS 317
IPPA+L F T S+LI V +YDR V ++RR+T +G T LQR A+
Sbjct: 351 IPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAA 410
Query: 318 FTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMK 377
E RL +A+D +VE G VPL IF +PQ+ LMGTA F V +IEFFY+Q+P++M+
Sbjct: 411 IVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMR 470
Query: 378 SLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWI-LNNLNVSHLDYYY 428
SL +++++ T +GN+ S+ +++ V+ ++ G WI +N+N HLDY++
Sbjct: 471 SLCSAWALLTTTLGNYLSSLIITLVAYLS---GKDCWIPSDNINNGHLDYFF 519
|
|
| TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 173/428 (40%), Positives = 250/428 (58%)
Query: 36 IFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTV 95
+FF ALY +AVG GG KP + T ADQF E +EKA K SFFN+W +I + A
Sbjct: 116 VFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLA 175
Query: 96 LVYIQDNMGWTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWN 155
L++IQ+ + W+LG+ + + I+I IF G P YR + P GSPFTR+A+V+VAA++KW
Sbjct: 176 LIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWR 235
Query: 156 VPLPTNPKEL-YELD----LEDYAQKWKYMIDSTQNLRFFNKAAV-----KTSSTNPWML 205
+ + L YE + LE Y++ T RF +KA + + NPW L
Sbjct: 236 LSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKNRNPWRL 295
Query: 206 CSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIG 265
C+V QVEE K +L +IPI ++ + L Q+NT F+KQG+ +DR IG+ F IPPA+
Sbjct: 296 CTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQS 355
Query: 266 FVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRXXXXXXXXXXXXXXASFTERYRLS 325
V +++LI + LYDR FV ++R+ T + GIT LQR E RL
Sbjct: 356 IVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLK 415
Query: 326 VAKDHSIVEKGQQV-PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYS 384
VA+DH +++ ++V P++ LLPQ++L+G D F V E FYDQ PE M+S+G +
Sbjct: 416 VARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIF 475
Query: 385 MTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAIXXXXXXXXXXX 444
++ +GVG+F ST ++STV I+K HG + W++NNLN +HLDYYY A
Sbjct: 476 ISVVGVGSFVSTGIISTVQTISKSHGEE-WLVNNLNRAHLDYYYWIIASLNAVSLCFYLF 534
Query: 445 XAKFYVYK 452
A ++YK
Sbjct: 535 IANHFLYK 542
|
|
| TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 182/473 (38%), Positives = 277/473 (58%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
+I+LTLS +PGLK AC + + +KA + FF A+Y +++GTGG KP++ + GA
Sbjct: 123 LILLTLSWFIPGLK--ACHEDMCVEPRKAHEIA---FFIAIYLISIGTGGHKPSLESFGA 177
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQF++ P+E+ K+S+FNWW + G L A TV+VYI+D +GW + + T+ ++ S
Sbjct: 178 DQFEDGHPEERKMKMSYFNWWNAGLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATSF 237
Query: 121 AIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYM 180
IF G PFYR++ P+GSP T M +V VAAI K N+P P++ L+EL E+Y K + +
Sbjct: 238 FIFRIGKPFYRYRAPSGSPLTPMLQVFVAAIAKRNLPCPSDSSLLHELTNEEYT-KGR-L 295
Query: 181 IDSTQNLRFFNKAAV--------KTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPST 232
+ S++NL+F +KAAV K +PW L +VT+VEE K ++ MIPI T
Sbjct: 296 LSSSKNLKFLDKAAVIEDRNENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGV 355
Query: 233 MLAQINTLFVKQGTTLDRAI-GSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTK 291
Q +TLF+KQ +DR I G+SF +PPASL + LS++I V +Y++ V ++RR T
Sbjct: 356 CATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRATG 415
Query: 292 NPRGITLLQRXXXXXXXXXXXXXXASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351
N RGI++LQR A+ E+ RL AK+H + + + L+ L PQF+
Sbjct: 416 NERGISILQRIGVGMVFSLFAMIIAALIEKKRLDYAKEHHM---NKTMTLSAIWLAPQFL 472
Query: 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGH 411
++G ADAF V E+FYDQ P++M+SLG ++ ++ LG +F + L++ ++ +
Sbjct: 473 VLGVADAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVLGAASFVNNLLITVSDHLAEEISG 532
Query: 412 KGWILNNLNVSHLDYYYAFFAIXXXXXXXXXXXXAKFYVYKAEVSDSMEVLTE 464
KGW +LN S LD +Y A A Y YK V S+ V+ +
Sbjct: 533 KGWFGKDLNSSRLDRFYWMLAALTAANICCFVIVAMRYTYKT-VQPSLAVVAD 584
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FNL7 | PTR3_ARATH | No assigned EC number | 0.7008 | 0.9668 | 0.8006 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 482 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 7e-81 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-13 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 4e-09 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 5e-08 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 6e-04 | |
| PRK10207 | 489 | PRK10207, PRK10207, dipeptide/tripeptide permease | 0.003 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 7e-81
Identities = 123/389 (31%), Positives = 181/389 (46%), Gaps = 34/389 (8%)
Query: 1 MIVLTLSVSLPGLKPPACKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGA 60
++LTL P L P +Q+ +F+ LY +A+GTGG KPN+S GA
Sbjct: 15 HVLLTLGAIPPSLSP----------------VQVALFYIGLYLIALGTGGIKPNVSAFGA 58
Query: 61 DQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120
DQFDE + + FF+W+ FSI G+L A + Y+Q N+G+ LG+GLP +G+ +++
Sbjct: 59 DQFDETQDPRRD---GFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLAL 115
Query: 121 AIFFAGTPFYRHK-KPTGSPFTRMAKVIVAAIRKWNVP-LPTNPKELYELDLEDYAQKWK 178
+F G+ Y+ K P GSPFT I+ A K LP + LY + +
Sbjct: 116 LVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWALEKYNKRSIS 175
Query: 179 YMIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQIN 238
T + K + V + +L M+PI +P M Q+
Sbjct: 176 QTKVHT-RVAVIFIPLPKFWALF----DQQGSVWLLQAILLMLPIWAFWILPDQMWTQLA 230
Query: 239 TLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITL 298
TL V+Q T+DR I F+IPPAS F L++LI + + D ++R RG+TL
Sbjct: 231 TLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLR----LKRGLTL 286
Query: 299 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADA 358
QR G+G+ I I+ +A+ E R A + G VPL I LP+ + G
Sbjct: 287 PQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSLPELFISGVG-- 344
Query: 359 FLEVAKIEFFYDQAPENMKSLGTSYSMTT 387
+EF D P +M SL T S
Sbjct: 345 --LAGALEFAPDALPSSMMSLWTLLSAAA 371
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 71/369 (19%), Positives = 132/369 (35%), Gaps = 44/369 (11%)
Query: 30 STLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGA 89
S G + L + VGTG KPNIS++ + + PK+ + F + I G+
Sbjct: 113 SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELY----PKDDPRRDGGFTLFYMGINIGS 168
Query: 90 LFANTVLVYIQDNMGWTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVA 149
L A + + N GW +G+GL +G+ I + IF G RH K G
Sbjct: 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR---RHVKGIGGV---------- 215
Query: 150 AIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNKAAVKTSSTNP-----WM 204
P P + L + ++ N F+ + S
Sbjct: 216 -----PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEA 270
Query: 205 LCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTT-LDRAIGSSFKIPPASL 263
S +E +++LA IP+ + + + Q+ + ++R I F++PPA
Sbjct: 271 FRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWF 329
Query: 264 IGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYR 323
+++ + + K+ R K P + +GL++ + +I +
Sbjct: 330 QSLNPFFIILFSPILAALWTKLGRG-NKQPSTPI---KFALGLILAGLGFLILLLAGIWF 385
Query: 324 LSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSY 383
+ S ++ L+ +VL + F+ + AP +KS +
Sbjct: 386 GGPSGLVS-----------VWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAM 434
Query: 384 SMTTLGVGN 392
T+ G
Sbjct: 435 WFLTVAAGQ 443
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 30/118 (25%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 44 LAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM 103
LA+ GT + A D+FE ++ + + FF+++ F+I G+LF+ + ++ ++
Sbjct: 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDV 151
Query: 104 G-------WTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKW 154
G + L +G+P + +++++ +F G+ Y+ K P G+ +++ K IV A++K
Sbjct: 152 GCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 29 ASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFG 88
A ++ + F L T+AVG+G K N S++ ++ + + + F SI G
Sbjct: 97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLF---YMSINIG 153
Query: 89 ALFANTVLVYIQDNMGWTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAK 145
+ + + I +N G+ +G+ L +G+ I + FFAG R P + K
Sbjct: 154 SFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGK 210
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLS 400
++I LPQ+VL + V +EF Y QAP NMKS+ + + T+ +GN ++
Sbjct: 550 VSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN-----IIV 604
Query: 401 TVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFY 449
+ + N++ + F+ L ++ F ++A Y
Sbjct: 605 LIIAEFE------------NMAVQWAEFVLFSSLMLVVMAIFSILAYTY 641
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 30 STLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGA 89
S L+ + F AL T+AVG G K N +++ + + PK+ +F ++M SI G+
Sbjct: 101 SLLKPDLIFIALGTIAVGNGLFKANPASLLSKCY---PPKDPRLDGAFTLFYM-SINIGS 156
Query: 90 LFANTVLVYIQDNMGWTLGYGLPTLGLSISIAIFFA 125
L + ++ I D G+++ Y L GL I++ ++FA
Sbjct: 157 LISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFA 192
|
Length = 489 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.68 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.66 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.65 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.62 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.61 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.61 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.6 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.6 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.59 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.59 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.58 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.58 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.57 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.57 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.56 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.55 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.55 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.55 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.54 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.54 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.54 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.53 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.52 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.51 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.5 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.49 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.49 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.48 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.47 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.47 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.47 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.47 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.47 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.46 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.46 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.46 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.45 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.45 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.45 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.44 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.44 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.44 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.43 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.4 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.4 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.39 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.39 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.39 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.39 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.39 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.39 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.38 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.38 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.37 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.36 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.36 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.36 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.35 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.34 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.34 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.33 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.31 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.31 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.31 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.31 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.29 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.26 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.26 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.24 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.23 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.23 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.21 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.21 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.19 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.18 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.18 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.17 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.17 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.13 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.05 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.04 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.99 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.9 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.89 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.88 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.84 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.7 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.68 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.65 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.55 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.54 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.54 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.54 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.53 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.51 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.5 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.5 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.49 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.49 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.48 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.48 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.48 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.45 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.44 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.44 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.44 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.44 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.42 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.39 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.38 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.37 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.37 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.34 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.34 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.33 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.33 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.33 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.32 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.31 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.31 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.3 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.29 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.29 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.27 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.26 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.26 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.21 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.21 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.17 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.17 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.16 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.15 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.14 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.14 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.11 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.11 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.09 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.09 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.08 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.07 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.06 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.05 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.04 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.03 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.03 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.02 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 97.99 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.99 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 97.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 97.96 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.95 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.95 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 97.91 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.88 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.88 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.87 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.87 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.86 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.84 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.83 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.83 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.82 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.82 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.78 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.77 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.76 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.75 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.74 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.73 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.72 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.68 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.66 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.64 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.63 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.62 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.61 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.6 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.58 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.53 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.52 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.49 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.46 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.44 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.44 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.43 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 97.37 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 97.36 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.32 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 97.27 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.25 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.22 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.22 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.19 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.12 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 96.88 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.86 | |
| PRK11462 | 460 | putative transporter; Provisional | 96.85 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 96.65 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 96.6 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.57 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 96.56 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.34 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.33 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 96.26 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 96.22 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 96.18 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.16 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 96.13 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 95.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 95.9 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 95.73 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 95.72 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 95.58 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 95.52 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 95.5 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 95.43 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.38 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 94.9 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 94.86 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.84 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 94.57 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 94.31 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 93.86 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 93.82 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 93.01 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 92.91 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 92.29 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 91.04 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.16 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 89.71 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 89.62 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 89.5 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 88.92 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 87.59 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 87.1 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 86.98 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 86.79 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 86.34 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 84.71 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 84.16 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 83.26 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 82.46 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 81.96 | |
| PF01891 | 205 | CbiM: Cobalt uptake substrate-specific transmembra | 81.71 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 80.09 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=454.50 Aligned_cols=440 Identities=48% Similarity=0.786 Sum_probs=388.7
Q ss_pred EEEeecccCCCCCCCCCCC-CCCCCCCCcchhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHH
Q 011595 3 VLTLSVSLPGLKPPACKDI-NSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWW 81 (482)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~ 81 (482)
.||++..+|.++|+.|+.. +...|+.++......++.++.++++|.|+.||+..++++|||++.++++++++.++|+|+
T Consensus 120 ~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~ 199 (571)
T KOG1237|consen 120 GLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWF 199 (571)
T ss_pred HHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHH
Confidence 4677888899999998211 244689999999999999999999999999999999999999988888887888999999
Q ss_pred HHHHHHHHHHHhHhHhhhhhcccccchhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCC
Q 011595 82 MFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTN 161 (482)
Q Consensus 82 y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~ 161 (482)
|+.+|+|.+++..+..|++++.||.++|.++++.+++++++|+.+.+.|+.++|.++|+..+.+|+..+.+++....+..
T Consensus 200 yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~ 279 (571)
T KOG1237|consen 200 YFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLD 279 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999987665533
Q ss_pred CccccccchhhhhhhccccccCCccchhhhhhhhccC-------CCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011595 162 PKELYELDLEDYAQKWKYMIDSTQNLRFFNKAAVKTS-------STNPWMLCSVTQVEETKQMLAMIPILVATFVPSTML 234 (482)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~ 234 (482)
......... +.....++++++++|.++.... ..++|+.++.++|||.|.++|++++++..++||..+
T Consensus 280 ~~~~~~~~~------~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~ 353 (571)
T KOG1237|consen 280 PEELYYDCT------DSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVY 353 (571)
T ss_pred chhcccccc------ccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHH
Confidence 222111100 0112233557788898876432 136799999999999999999999999999999999
Q ss_pred hcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 011595 235 AQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMV 314 (482)
Q Consensus 235 ~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~ 314 (482)
.|+.+.++.|+.+||+++++++++|++.++.+..+.++++.|++++...|+.+|..++|++++++.|+.+|+++..+++.
T Consensus 354 aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~ 433 (571)
T KOG1237|consen 354 AQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMA 433 (571)
T ss_pred HhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHH
Confidence 99999999999999999884499999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHH
Q 011595 315 IASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFF 394 (482)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~l 394 (482)
..+.+|.+|...+.+. ....+++|++|++|||+++|+||+|.++.++||.|+++|++||+.++++|.+..++|+.+
T Consensus 434 ~aa~vE~krl~~~~~~----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~l 509 (571)
T KOG1237|consen 434 VAGIVEAKRLKTAVSL----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYL 509 (571)
T ss_pred HHHHHHHHHhhhhhhc----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876551 112358999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccccCCcccccc-CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 011595 395 STFLLSTVSNITKRHGHKGWIL-NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAE 454 (482)
Q Consensus 395 g~~l~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~~~ 454 (482)
+.++..++...++. +.+|++ +|+|.++++++|++++.+..+..+.|..+++||+++..
T Consensus 510 ss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~ 568 (571)
T KOG1237|consen 510 SSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDD 568 (571)
T ss_pred HHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccc
Confidence 99999998876643 468999 99999999999999999999999999999999987654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=361.99 Aligned_cols=364 Identities=18% Similarity=0.286 Sum_probs=281.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhh
Q 011595 32 LQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGL 111 (482)
Q Consensus 32 ~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i 111 (482)
.+...++++++++++|+|++|||++++++|+||++|| |||++|+++|+++|+|++++|++++++.+++||+.+|.+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3678999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecC--CCCCchh------hHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccC
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKK--PTGSPFT------RMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDS 183 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~--p~~~~~~------~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (482)
++++|.+++++++++++++.... |+.+|.. ...+++...+... ++....
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~------------- 247 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL----------LTLLLN------------- 247 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH----------HHHHHH-------------
Confidence 99999999999999998876532 2222221 1112211111100 000000
Q ss_pred Cccchhhhhhh-------hccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhH-hhcccCCCCC
Q 011595 184 TQNLRFFNKAA-------VKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQG-TTLDRAIGSS 255 (482)
Q Consensus 184 ~~~~~~~~~a~-------~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~-~~~~~~~~~g 255 (482)
+-.+-+... ..+. ...++ .++++ +|+|+++..+++++..++||++|+|++|++..++ ++.|++.. |
T Consensus 248 --~~~~~~~~~~~~i~~~~~~~-~~~~~-~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g 321 (498)
T COG3104 248 --QNTFSGVLLVISILIAIIYF-AEAFR-SPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-G 321 (498)
T ss_pred --HHHHHHHHHHHHHHHHHHHH-HHHhc-cCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-c
Confidence 000100000 0000 00011 12344 7899999999999999999999999999997766 45666634 6
Q ss_pred eeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccC
Q 011595 256 FKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEK 335 (482)
Q Consensus 256 ~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 335 (482)
+++|++|+|++|+++++++.|++.++++|+.++. + .+++..|+++|+.+++++++++.....+.. ..
T Consensus 322 ~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~---~ps~~~KFalGl~l~g~~fl~l~~~~~~~~---~~------ 388 (498)
T COG3104 322 FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-K---QPSTPIKFALGLILAGLGFLILLLAGIWFG---GP------ 388 (498)
T ss_pred eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-C---CCCcchHHHHHHHHHHHHHHHHHHHHHhhc---CC------
Confidence 9999999999999999999999999999988875 2 389999999999999999999877643211 00
Q ss_pred CCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccc
Q 011595 336 GQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWI 415 (482)
Q Consensus 336 ~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~ 415 (482)
+..+|++|++++|+++++||++++|++++++++.+|+++++++||.|+++.+.|+.+++.+.+.... ++
T Consensus 389 --~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-------- 457 (498)
T COG3104 389 --SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-------- 457 (498)
T ss_pred --CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc--------
Confidence 2357999999999999999999999999999999999999999999999999999999999885331 10
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 011595 416 LNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKA 453 (482)
Q Consensus 416 ~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~~ 453 (482)
+..+......+|..++...++..+++....++.+|..
T Consensus 458 -~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~ 494 (498)
T COG3104 458 -PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMM 494 (498)
T ss_pred -hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 0111122345788999999999999888888876654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=311.43 Aligned_cols=374 Identities=12% Similarity=0.208 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhhHH
Q 011595 35 GIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTL 114 (482)
Q Consensus 35 ~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~i 114 (482)
..+++++.++++|.|+.+|+.+++++|+||++|+ +|+++|+++|+.+|+|++++|++++++.+++||+++|.++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 3456777888899999999999999999998765 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcceeecCC-CCCchh--hHHH----HHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccc
Q 011595 115 GLSISIAIFFAGTPFYRHKKP-TGSPFT--RMAK----VIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNL 187 (482)
Q Consensus 115 ~~~l~~i~~~~~~~~~~~~~p-~~~~~~--~~~~----v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (482)
++++++++++..++++.+..+ +.+|.+ +... .+....--...-. ...+.. +..++..
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~------------ 240 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALI---TVLFWK-EWSVYAL------------ 240 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHH------------
Confidence 999999888887776543211 111211 1100 0000000000000 000000 0000000
Q ss_pred hhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhH-hhcccCCCCCeeeCccccchh
Q 011595 188 RFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQG-TTLDRAIGSSFKIPPASLIGF 266 (482)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~-~~~~~~~~~g~~i~~~~~~~i 266 (482)
.........+ ....++ .+ .+.+|+|++..++++++..++||+.|+|.++++...+ +++|++++ |+++|++|+|++
T Consensus 241 ~~~~~~~~~~-~~~~~~-~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qsl 316 (493)
T PRK15462 241 IVATIIGLGV-LAKIYR-KA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSI 316 (493)
T ss_pred HHHHHHHHHH-HHHHHH-hc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhH
Confidence 0000000000 000000 01 1236788888899999999999999999999886555 67899888 899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHH
Q 011595 267 VTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVL 346 (482)
Q Consensus 267 n~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~l 346 (482)
|++.++++.|++.++|.++.++. |.++...|+++|+++.++|++++.+.... ..++ ..+|++|+
T Consensus 317 Np~~ii~l~P~~a~lw~~l~~~~----~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~--------~~~s~~wl 380 (493)
T PRK15462 317 NAFAVMLCGVFLAWVVKESVAGN----RTVRIWGKFALGLGLMSAGFCILTLSARW----SAMY--------GHSSLPLM 380 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCC--------CCcCHHHH
Confidence 99999999999999987775432 23899999999999999999988765421 1111 24799999
Q ss_pred HHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHh-hHHHHHhhhhhhhhccccccCCccccccCCCCcchhH
Q 011595 347 LPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTL-GVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLD 425 (482)
Q Consensus 347 i~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~-~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 425 (482)
+..|+++|+||++.+|.+++++.+++|++.+|++||+|++.. ++|+.+++.+.+.....+. .+-...+-....+.
T Consensus 381 ~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~ 456 (493)
T PRK15462 381 VLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF----DASGAINYSINAYI 456 (493)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CccccccchhhhHH
Confidence 999999999999999999999999999999999999999954 7999999999887643110 00000000011345
Q ss_pred HHHHHHHHHHHHH-HH-HHHhhhhccccc
Q 011595 426 YYYAFFAILNVLN-FV-FFLVVAKFYVYK 452 (482)
Q Consensus 426 ~~f~~~~~l~~l~-~l-l~~~~~~~~~~~ 452 (482)
.+|..++.++++. ++ ++....+.++.|
T Consensus 457 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
T PRK15462 457 EVFDQITWGALACVGVVLMIWLYQALKFR 485 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5777777766655 43 333443333333
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=312.42 Aligned_cols=361 Identities=24% Similarity=0.444 Sum_probs=294.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc-------cc
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM-------GW 105 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~-------g~ 105 (482)
.....+++++++++|.|++|||.+++++|||+++++ ++|+++|+|+|+++|+|+++++++.+++++++ +|
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 345678999999999999999999999999987543 26899999999999999999999999998554 69
Q ss_pred cchhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCc
Q 011595 106 TLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQ 185 (482)
Q Consensus 106 ~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (482)
.++|.++++++++++++++.+++++++++|.++++..+.+++..+++++...... ..
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~-----------------------~~ 217 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE-----------------------HW 217 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc-----------------------cc
Confidence 9999999999999999999999988777788888878888887777654321110 00
Q ss_pred cchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccch
Q 011595 186 NLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIG 265 (482)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~ 265 (482)
..+|+|.++... ..++++|+|++++++++++..++||..|.|+.+.+..|+.+++.+++ ++.+|++++++
T Consensus 218 ~~~~ld~a~~~~---------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~ 287 (654)
T TIGR00926 218 PLHWLDYAKDKH---------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQV 287 (654)
T ss_pred chhHHHHhcccc---------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHH
Confidence 135677665433 23568899999999999999999999999999999999998888777 79999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------
Q 011595 266 FVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVA------------------ 327 (482)
Q Consensus 266 in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~------------------ 327 (482)
+|++.++++.|++++.++|.++|++.. +++.+|+++|+++++++++++++.|..+...-
T Consensus 288 ~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (654)
T TIGR00926 288 VNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLNTDC 364 (654)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEecCCC
Confidence 999999999999999889998886433 78999999999999999999999885433000
Q ss_pred -----------------------h-------------h---c-----------------------------C----C---
Q 011595 328 -----------------------K-------------D---H-----------------------------S----I--- 332 (482)
Q Consensus 328 -----------------------~-------------~---~-----------------------------~----~--- 332 (482)
. + + + +
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (654)
T TIGR00926 365 TICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYVLLLS 444 (654)
T ss_pred CcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEEEEEe
Confidence 0 0 0 0 0
Q ss_pred ---c----------------------------------------------------------------------------
Q 011595 333 ---V---------------------------------------------------------------------------- 333 (482)
Q Consensus 333 ---~---------------------------------------------------------------------------- 333 (482)
.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (654)
T TIGR00926 445 QGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDNAKSS 524 (654)
T ss_pred cCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccccccc
Confidence 0
Q ss_pred ------------------cCC--C-----------cccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHH
Q 011595 334 ------------------EKG--Q-----------QVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTS 382 (482)
Q Consensus 334 ------------------~~~--~-----------~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g 382 (482)
++. + .+++|++||+|||++.++||++.+++++|+.++++|++||+..++
T Consensus 525 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a 604 (654)
T TIGR00926 525 TFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQA 604 (654)
T ss_pred cccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHH
Confidence 000 0 123578999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011595 383 YSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFY 449 (482)
Q Consensus 383 ~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~ 449 (482)
+|.++.++|+.+...+...-.. .+....|.++++++++..++|.+.++.|
T Consensus 605 ~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 605 LWLLTVAIGNLIVVVIAEFENF-----------------SVQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-----------------hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998887654221 1124567788889999999998888654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=303.46 Aligned_cols=367 Identities=14% Similarity=0.226 Sum_probs=262.3
Q ss_pred HHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhhHHH
Q 011595 36 IFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLG 115 (482)
Q Consensus 36 ~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~i~ 115 (482)
.++++++++++|.|+++|+..++++|+||++++ ||+++|+++|+++|+|+++||.++|++.+++||+++|++++++
T Consensus 107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 466899999999999999999999999998763 5788999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhcCcceeec--CCCCCchhhHHHHHHHHH-------Hh-cCCCCCCCCccccccchhhhhhhccccccCCc
Q 011595 116 LSISIAIFFAGTPFYRHK--KPTGSPFTRMAKVIVAAI-------RK-WNVPLPTNPKELYELDLEDYAQKWKYMIDSTQ 185 (482)
Q Consensus 116 ~~l~~i~~~~~~~~~~~~--~p~~~~~~~~~~v~~~a~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (482)
+.++++.+++.++++++. +|++++ .|..+.+.... .. ...+. .. ..++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~~~~~~~~~~~~~~---~~------~~~~------------ 240 (489)
T PRK10207 183 LIIALLVYFACRGMVKDIGSEPDHKP-MSFSKLLLVLLGSVVMIFVCAWLMHN---VE------VANL------------ 240 (489)
T ss_pred HHHHHHHHHHcchhhcccCCCCCccc-hhhhhHHHHHHHHHHHHHHHHHHHhh---hh------HHHH------------
Confidence 888888777777666442 333332 23222211110 00 00000 00 0000
Q ss_pred cchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHh-hcccCCCCCeeeCccccc
Q 011595 186 NLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGT-TLDRAIGSSFKIPPASLI 264 (482)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~-~~~~~~~~g~~i~~~~~~ 264 (482)
-....+..... .+.++.++.+. .++++.+..+.+++..++||+.|.|..+.++.+.+ +++.... |+.+++++++
T Consensus 241 --~~~~~~~i~~~-~f~~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~ 315 (489)
T PRK10207 241 --VLIVLSIVVTI-IFFREAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQ 315 (489)
T ss_pred --HHHHHHHHHHH-HHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHH
Confidence 00000000000 00000011222 34555556677777899999999999988876665 4666555 7999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHH
Q 011595 265 GFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIF 344 (482)
Q Consensus 265 ~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~ 344 (482)
++|++.++++.|+.+++++++.+|. +.+++..|+.+|+++.+++++.++..+... ... +..+|+|
T Consensus 316 ~~n~~~iii~~pl~~~l~~rl~~r~----~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~--------~~~~s~~ 380 (489)
T PRK10207 316 ALNPFWVVVASPILAGIYTHLGSKG----KDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA--------QGLTSPW 380 (489)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC--------CCccCHH
Confidence 9999999999999999876665442 237999999999999999988765443110 000 1146889
Q ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchh
Q 011595 345 VLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHL 424 (482)
Q Consensus 345 ~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~ 424 (482)
|+++.|+++|+||.+.+|++++++++.+|++++|.+||+|+++.++|+.+|..+.+.+..... ..++.. ..+.+
T Consensus 381 ~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~--~~~~~~----~~~~~ 454 (489)
T PRK10207 381 FIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN--ITDPLE----TLPVY 454 (489)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccchh----hhhhH
Confidence 999999999999999999999999999999999999999999999999999999886642111 000000 11235
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 011595 425 DYYYAFFAILNVLNFVFFLVVAKFYVYKAE 454 (482)
Q Consensus 425 ~~~f~~~~~l~~l~~ll~~~~~~~~~~~~~ 454 (482)
..+|..+++.+++++++++++.|++++.++
T Consensus 455 ~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~ 484 (489)
T PRK10207 455 TNVFGKIGLVTLGVAVVMALMVPWLNRMIN 484 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677888999999999999998888877654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=299.42 Aligned_cols=361 Identities=13% Similarity=0.187 Sum_probs=259.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.++++++++++|.|+++|+.+++++|++|+++++ +|+++|+++|++.|+|+++||++++++.+++||++.|+++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3566778999999999999999999999999976522 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhh----H-H--HHH----HHHHHhcCCCCCCCCccccccchhhhhhhccccc
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTR----M-A--KVI----VAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMI 181 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~----~-~--~v~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (482)
++.++++++++++.++.+++.++++++..+ . . ..+ ......... ..... ..++.
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~------- 242 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHHVV-------IANIL------- 242 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-HhccH-------HHHHH-------
Confidence 988888888777777666543322221111 0 0 000 000000000 00000 00000
Q ss_pred cCCccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH-hHhhcccCCCCCeeeCc
Q 011595 182 DSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVK-QGTTLDRAIGSSFKIPP 260 (482)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~-~~~~~~~~~~~g~~i~~ 260 (482)
. .....+...+.. ......+.++++ +++...++++++..++||+.|+|+.+++.. +.+++|++.+ ++++|+
T Consensus 243 ~-----~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~ 314 (475)
T TIGR00924 243 L-----MTVTLAVIIFFF-RLAFKPRLDAVA-RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPV 314 (475)
T ss_pred H-----HHHHHHHHHHHH-HHHHhccCCHHH-HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECH
Confidence 0 000000000000 000000112233 344455788888999999999999998854 4566787766 799999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++++++|++.+++++|++++++.++.+| .+ .++...|+.+|+++.+++++.+++.... ..+ ..+
T Consensus 315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~-~~---~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~--------~~~ 378 (475)
T TIGR00924 315 IWFQSLNPFWVVVGSPVLAMIWTRLGRK-GK---DPTTPLKFTLGMLFCGASFLTFAASIWF----ADA--------GGL 378 (475)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhC-CC---CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC--------CCc
Confidence 9999999999999999999876555443 22 2788889999999999999988765211 111 125
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~ 420 (482)
+|+||++++++++|+||++.+|.+++++++++|+++||+++|++.+..++|+.+|+.+.+......
T Consensus 379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~-------------- 444 (475)
T TIGR00924 379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ-------------- 444 (475)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------
Confidence 799999999999999999999999999999999999999999999999999999999988664311
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011595 421 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 451 (482)
Q Consensus 421 ~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~ 451 (482)
....+|..+++++++.+++++++.|+++|
T Consensus 445 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 445 --GVTGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12456788888888888888888887654
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=302.43 Aligned_cols=339 Identities=33% Similarity=0.569 Sum_probs=225.1
Q ss_pred CcchhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccch
Q 011595 29 ASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLG 108 (482)
Q Consensus 29 ~~~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~ 108 (482)
++..+.+.++++|+++++|+|++|||++++++|||++++++ +|+++|++||+++|+|+++++.+.+++++++||.++
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 44456889999999999999999999999999999987422 689999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCcceeec-CCCCCchhh-HHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCcc
Q 011595 109 YGLPTLGLSISIAIFFAGTPFYRHK-KPTGSPFTR-MAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQN 186 (482)
Q Consensus 109 F~i~~i~~~l~~i~~~~~~~~~~~~-~p~~~~~~~-~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (482)
|+++++++++++++++.++++|+.. +|++++..+ ...+...+.+++....+.....+.+... .+ . ... ....
T Consensus 105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~-~~~-~~~~ 178 (372)
T PF00854_consen 105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSWLDWALF-QY---S-ERS-IFGI 178 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHHHHHHHH-HH---C-CCC-CCCC
T ss_pred hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHHHHHhhh-hh---h-hhh-hhhh
Confidence 9999999999999999999998876 677787777 4444445554443322110000100000 00 0 000 0000
Q ss_pred chhhhhhhhccCCCCCcc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCC-eeeCccccc
Q 011595 187 LRFFNKAAVKTSSTNPWM-LCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSS-FKIPPASLI 264 (482)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~-~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g-~~i~~~~~~ 264 (482)
......+.........+. .++.+++++.|.+.+.++.+...+.|+..+.|.++....+..++|+.++ + +++|+++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~ 257 (372)
T PF00854_consen 179 IVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQ 257 (372)
T ss_dssp CCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGT
T ss_pred hhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhh
Confidence 000000000000000000 0124556777777777777777788888888888877888888877666 6 899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHH
Q 011595 265 GFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIF 344 (482)
Q Consensus 265 ~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~ 344 (482)
++|++.++++.|+++++++|+.++ + +.+++..|+.+|+++..+++++.+.++..|.....+++ ..+.+
T Consensus 258 ~~n~i~iii~~pi~~~~~~p~~~~-~---~~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------~~~~~ 325 (372)
T PF00854_consen 258 SFNPIFIIIFIPILDRVVYPLLRR-G---IQPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--------KVSPW 325 (372)
T ss_dssp THHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T--------T--TH
T ss_pred hHHHHHHHHHHHHHHHHHhHHhhh-c---ccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC--------CCChh
Confidence 999999999999999999999883 2 23899999999999999999998888875554444333 44568
Q ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhh
Q 011595 345 VLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLG 389 (482)
Q Consensus 345 ~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~ 389 (482)
|+++.+++++++|.+.++++.+.+++.+|+++++.++|+|+....
T Consensus 326 ~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 326 WQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhc
Confidence 999999999999999999999988888888888888888877654
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=296.44 Aligned_cols=364 Identities=13% Similarity=0.236 Sum_probs=259.9
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhhH
Q 011595 34 LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPT 113 (482)
Q Consensus 34 ~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~ 113 (482)
...++++++++++|.|+++|+..++++|+||++++ +|+++++++|+++|+|+++||++++++.+++||++.|++++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45667889999999999999999999999987653 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeec--CCCCCchhhHHHH-------HHHHHHhcC-CCCCCCCccccccchhhhhhhccccccC
Q 011595 114 LGLSISIAIFFAGTPFYRHK--KPTGSPFTRMAKV-------IVAAIRKWN-VPLPTNPKELYELDLEDYAQKWKYMIDS 183 (482)
Q Consensus 114 i~~~l~~i~~~~~~~~~~~~--~p~~~~~~~~~~v-------~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (482)
+.++++++.+++.++.+++. +|++++. +..+. ......... ...+ . ..+.. ...
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~------~~~ 251 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPI-NYRKLLLTIVGVVALIAIATWLLHNQ---E------IARMA------LGV 251 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCcccc-chhhHHHHHHHHHHHHHHHHHHHhcc---h------HHHHH------HHH
Confidence 88888887777666555443 2332222 11111 111111000 0000 0 00000 000
Q ss_pred CccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHh-hcccCCCCCeeeCccc
Q 011595 184 TQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGT-TLDRAIGSSFKIPPAS 262 (482)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~-~~~~~~~~g~~i~~~~ 262 (482)
.......+..+.. ++.++ +|+++.+..+.+++..++||++|.|+++.+..++. +++++.. |+.+|+++
T Consensus 252 ~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~ 320 (500)
T PRK09584 252 VALGIVVIFGKEA---------FAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQ 320 (500)
T ss_pred HHHHHHHHHHHHH---------hhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHH
Confidence 0000000000000 01223 34555555677778889999999999999987764 4565555 79999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccch
Q 011595 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLT 342 (482)
Q Consensus 263 ~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 342 (482)
++++|++.+++++|++++++.++.+| +++.+|+.+|+++.++|++.+.+...+ ..+ ...+|
T Consensus 321 ~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~--------~~~vs 381 (500)
T PRK09584 321 YQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND--------AGIVS 381 (500)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC--------CCccC
Confidence 99999999999999999986555444 578999999999999999998765421 111 22578
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCC-Cc
Q 011595 343 IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL-NV 421 (482)
Q Consensus 343 ~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~-~~ 421 (482)
.+|++++++++|+||++++|.+++++++++|+++||++||+|.++.++|+.+++.+.+.+..... ..+.. ..
T Consensus 382 ~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~-------~~~~~~~~ 454 (500)
T PRK09584 382 VNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN-------VTDPLMSL 454 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cccchhhh
Confidence 89999999999999999999999999999999999999999999999999999998875531100 00100 01
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 011595 422 SHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAE 454 (482)
Q Consensus 422 ~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~~~ 454 (482)
+.+..+|..+++++++.+++++++.+++++.++
T Consensus 455 ~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~ 487 (500)
T PRK09584 455 EVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQ 487 (500)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 124567888888888888888888888877654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-15 Score=154.22 Aligned_cols=263 Identities=12% Similarity=0.097 Sum_probs=166.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.+++.|...|...+++.|.+|++ +|++++++++...++|..+||.+++++. +++|++.|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 5677888999999999999999999999999865 5899999999999999999999999998 68999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..+...+..++.++ ++..++. .+ .+
T Consensus 171 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~---~~------------------------------------------~~--- 201 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAYKL-STVRTPV---RE------------------------------------------GM--- 201 (400)
T ss_pred HHHHHHHHHHHHHhCCcccc-cccchhh---HH------------------------------------------HH---
Confidence 87666554433333221100 0000000 00 00
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
......+.++.. .+....++..+.|....++...++ . + +.....+.+..++.+..+
T Consensus 202 ----------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~---~-~-~~~~~~g~l~~~~~~~~~ 257 (400)
T PRK11646 202 ----------------TRVLRDKRFVTY---VLTLTGYYMLAVQVMLMLPIMVND---I-A-GSPSAVKWMYAIEACLSL 257 (400)
T ss_pred ----------------HHHHcCchHHHH---HHHHHHHHHHHHHHHHhhhhhHHh---h-c-CCchHHHHHHHHHHHHHH
Confidence 000001111111 112222333333332222221111 1 1 000112344455555444
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
.......++. +|+ .+..+++..|.++.++++..++..+ +.++.+...++
T Consensus 258 ~~~~~~~~~~----~~r------~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~l 306 (400)
T PRK11646 258 TLLYPIARWS----EKR------FRLEHRLMAGLLIMSLSMFPIGMVS---------------------NLQQLFTLICL 306 (400)
T ss_pred HHHHHHHHHH----HHh------cchhHHHHHHHHHHHHHHHHHHHhh---------------------hHHHHHHHHHH
Confidence 3333333433 221 2334456778888888876655432 23444555677
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcccc
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNIT 406 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 406 (482)
.++|+.+..|...+.+.+.+|++.||.++|++++..++|+.+|+.+.+.+.+..
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 899999999999999999999999999999999999999999999999887643
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=149.47 Aligned_cols=285 Identities=12% Similarity=0.084 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.++++|++.+...|...+++.|++|++ ||+++++++..+.++|.++||++++++.+++|||+.|++.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 169 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI 169 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence 6778889999999999999999999999999975 5899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..+..+...++ . |++++ .+. + +.
T Consensus 170 ~~~~~l~~~~~~~~~~~---~-~~~~~-~~~-~---------------------------------------------~~ 198 (390)
T PRK03545 170 GGGALITLLLLIKLLPL---L-PSEHS-GSL-K---------------------------------------------SL 198 (390)
T ss_pred HHHHHHHHHHHHHhCCC---C-CCCCc-chH-H---------------------------------------------HH
Confidence 87655554433332221 1 11100 000 0 00
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCee-eCccccchhhHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFK-IPPASLIGFVTLSM 271 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~-i~~~~~~~in~i~i 271 (482)
.++...+.+..... ........+....+.......+ ..+ .+ ...+.+..+..+..
T Consensus 199 ----------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~---~~g--~s~~~~~~~~~~~~~~~ 254 (390)
T PRK03545 199 ----------------PLLFRRPALVSLYL---LTVVVVTAHFTAYSYIEPFVQQ---VAG--LSENFATLLLLLFGGAG 254 (390)
T ss_pred ----------------HHHHhCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---hcC--CCccHHHHHHHHHHHHH
Confidence 00000111111111 1111111111111111111111 112 00 11233444455555
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~ 351 (482)
++..++.+++. +|. + .+++.++..+.++++..+... ..+.+++++..+
T Consensus 255 ~~g~~~~g~l~----dr~-------~-~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~~ 302 (390)
T PRK03545 255 IIGSVLFSRLG----NRH-------P-SGFLLIAIALLLVCLLLLLPA--------------------ANSEWHLSVLSI 302 (390)
T ss_pred HHHHHHHHHHh----hcc-------c-hhHHHHHHHHHHHHHHHHHHH--------------------hchHHHHHHHHH
Confidence 55565665553 331 1 223556666665555443221 113455666778
Q ss_pred HHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHH
Q 011595 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFF 431 (482)
Q Consensus 352 l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~ 431 (482)
+++++.....+...+.+.+..|+ .+|.++|+++....+|..+|+.+.+.+.+.. + +...|...
T Consensus 303 l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-------------g---~~~~~~~~ 365 (390)
T PRK03545 303 FWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHL-------------G---LSSIGYVG 365 (390)
T ss_pred HHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------C---hhHHHHHH
Confidence 89999988888888888888775 7899999999999999999999999877422 1 23456666
Q ss_pred HHHHHHHHHHHHhhhh
Q 011595 432 AILNVLNFVFFLVVAK 447 (482)
Q Consensus 432 ~~l~~l~~ll~~~~~~ 447 (482)
+++.+++.++++...|
T Consensus 366 ~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 366 AALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 6777776766665554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-14 Score=148.45 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.+++.|...|...+++.|.+|++ +|+++.+++++..++|.++||.+++++.+..+|++.|++.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 4567778888899999988999999999999865 5789999999999999999999999998888999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..+++.+..+.. + +.+|++.+..+..+ ...+.
T Consensus 183 ~~~~~~~~~~~~~l-~---~~~~~~~~~~~~~~------------------------------------------~~~~~ 216 (417)
T PRK10489 183 AAGTFITLLPLLRL-P---ALPPPPQPREHPLR------------------------------------------SLLAG 216 (417)
T ss_pred HHHHHHHHHHHHhC-C---CCCCCCcccccchH------------------------------------------HHHHH
Confidence 77666554443322 1 11111100000000 00000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
+ +.+...+.+...+ +.... +..+....+.++....+ ..+.+ ....+++.....+..+
T Consensus 217 ----------~-----~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~p~~~~~---~~g~~-~~~~g~~~~~~~~g~~ 273 (417)
T PRK10489 217 ----------F-----RFLLASPVVGGIA---LLGGL-LTMASAVRVLYPALADE---VWQMG-AAQIGLLYAAVPLGAA 273 (417)
T ss_pred ----------H-----HHHHcChHHHHHH---HHHHH-HHHHHhHHHhhHHHHHh---ccCCC-hhHhHHHHHHHHHHHH
Confidence 0 0000111111111 11111 11112222222211111 11200 0113344555555555
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+...+.+++. +| .+..+.+.++.++.+++++.+.+. .+.+......++
T Consensus 274 ig~~~~~~l~----~~-------~~~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~ 321 (417)
T PRK10489 274 LGALTSGWLA----HS-------ARPGLLMLLSTLGSFLAVGLFGLM---------------------PMWILAVLCLAL 321 (417)
T ss_pred HHHHHHHHhh----hc-------cCcchHHHHHHHHHHHHHHHHHcc---------------------chHHHHHHHHHH
Confidence 5555555542 22 122334566777777776654432 133445566778
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+++.....+...++..+..|++.||+++|+++....+|+.+|+.+.+.+.+
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 8899888888888999999999999999999999999999999999998774
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-13 Score=144.63 Aligned_cols=84 Identities=7% Similarity=0.087 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc-cccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM-GWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~-g~~~~F~i 111 (482)
+...+++.+++.|+++|...|...+++.+++|++ +|+++++++..+.++|.++++++++++.+.+ ||+..|++
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 3567788999999999999999999999999976 6899999999999999999999999999884 99999999
Q ss_pred hHHHHHHHHHH
Q 011595 112 PTLGLSISIAI 122 (482)
Q Consensus 112 ~~i~~~l~~i~ 122 (482)
.++..++..+.
T Consensus 204 ~~~~~~~~~~~ 214 (465)
T TIGR00894 204 FGIVGCAWSLL 214 (465)
T ss_pred hhHHHHHHHHH
Confidence 88765544443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-13 Score=140.15 Aligned_cols=278 Identities=12% Similarity=0.072 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+...+++.+++.|+|.+...|+..+.+.|++|++ +|+++++++..+.++|.++|+.+++++.+++||+..|++.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4556788999999999999999999999999876 5899999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++.. ++.++ .++.++++++..+ +
T Consensus 185 ~~~~~~~~---~~~~~-~~~~~~~~~~~~~----------------------------------------------~--- 211 (399)
T PRK05122 185 MLLALLGL---LLARP-RPAVPPVKGERLP----------------------------------------------F--- 211 (399)
T ss_pred HHHHHHHH---HHHhc-CCCCCCCCccchh----------------------------------------------H---
Confidence 64433222 22221 1111111000000 0
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
.+..|..+.....+ ..+...+....+.......+ . + + -..+....+..+..+
T Consensus 212 ------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~--~--~-~~~~~~~~~~~~~~~ 263 (399)
T PRK05122 212 ------------------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYAA--R--G--W-DGAALALTLFGVAFV 263 (399)
T ss_pred ------------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--c--c--c-ccchHHHHHHHHHHH
Confidence 00011111111111 11111111111111111111 1 1 1 012233344555555
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+..++.+++.++. ++.+.+.++.++.++++..+...+ +.+++++..++
T Consensus 264 ~~~~~~g~l~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l 311 (399)
T PRK05122 264 GARLLFGNLINRL-----------GGLRVAIVSLLVEILGLLLLWLAP---------------------SPWMALIGAAL 311 (399)
T ss_pred HHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHHhc---------------------cHHHHHHHHHH
Confidence 5666666664332 233445667777777766554421 33456667789
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHH
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFA 432 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~ 432 (482)
.+++.....|.....+.+..|++.||+++|+++....+|..+++.+.+.+.+.. ++...|...+
T Consensus 312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~ 375 (399)
T PRK05122 312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF----------------GYPSIFLAAA 375 (399)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------CHHHHHHHHH
Confidence 999999989888888889999999999999999999999999988888765321 1234555556
Q ss_pred HHHHHHHHHHHhh
Q 011595 433 ILNVLNFVFFLVV 445 (482)
Q Consensus 433 ~l~~l~~ll~~~~ 445 (482)
++++++.++.+..
T Consensus 376 ~~~~~~~~~~~~~ 388 (399)
T PRK05122 376 LAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHh
Confidence 6555555444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-14 Score=141.00 Aligned_cols=270 Identities=10% Similarity=0.057 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.+++.+...|...+++.|++|++ +|+++++++..+.++|.++||.+++++.++.||++.|++.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6788889999999999999999999999999865 5899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchh-hHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFT-RMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~-~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
++..+++.+..+..+.+-++ ++++++.. +..+ ...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------------------------------------~~~~ 201 (365)
T TIGR00900 165 AVGFAISALLIVSVRIPELA-ASEIQALSNAVLR------------------------------------------DTRE 201 (365)
T ss_pred HHHHHHHHHHHHhcccccCC-CccccccchhHHH------------------------------------------HHHh
Confidence 87666665444333221100 00100000 0000 0000
Q ss_pred hhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHhHhhcccCCCCCeeeCccccchhhHHH
Q 011595 192 KAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQIN-TLFVKQGTTLDRAIGSSFKIPPASLIGFVTLS 270 (482)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~-s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~ 270 (482)
.. +.....+.+.. +......+...+.... ..++....+. ...+ ....+.+.....+.
T Consensus 202 ~~---------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~ 259 (365)
T TIGR00900 202 GI---------------KFVLKNPLLRT---LLLLALLFNLVFAPAIVALFPYVQSKY-LGRG---STHYGWVLAAFGLG 259 (365)
T ss_pred HH---------------HHHHcCcHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCc---hHHHHHHHHHHHHH
Confidence 00 00001111111 1112222222222222 1111111110 1111 01123444555555
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHH
Q 011595 271 MLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQF 350 (482)
Q Consensus 271 ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~ 350 (482)
.++..++.+++. +| .+..+.+..+.++.+++++...+.. + +.+......
T Consensus 260 ~~~~~~~~~~l~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~~~ 308 (365)
T TIGR00900 260 ALLGALLLGLLG----RY-------FKRMALMTGAIFVIGLAILVVGLTP-------------------P-NFPLFLVLW 308 (365)
T ss_pred HHHHHHHHHHHH----HH-------hchhHHHHHHHHHHHHHHHHHHhhc-------------------h-hHHHHHHHH
Confidence 566666665543 33 1223344556666666665554321 1 245566778
Q ss_pred HHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 351 VLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 351 ~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
++.+++.....+...++..+..|++.||.++|+++....+|..+++.+.+.+.+
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999887653
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=139.13 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|+|.|...|...+++.|.+|++ +|+++++++....++|.++++.+++++.++++|++.|++.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 6778899999999999999999999999999865 6899999999999999999999999998999999999988
Q ss_pred HHHHHHHHHHHHh
Q 011595 113 TLGLSISIAIFFA 125 (482)
Q Consensus 113 ~i~~~l~~i~~~~ 125 (482)
++..++..+..++
T Consensus 155 ~~~~~~~~~~~~~ 167 (399)
T TIGR00893 155 GVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHHHHHHhhh
Confidence 8666555444433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-13 Score=139.39 Aligned_cols=267 Identities=9% Similarity=0.069 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+.+.+++.|++.|...|...+++.|.+|++ +|++++++++...++|.++++.+++.+.+.++|+..|++.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 5777889999999999999999999999999865 5899999999999999999999999998889999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..+......++..+.+++++. .. . . . ...+.
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------~~----~--------~-------------~---~~~~~ 212 (406)
T PRK11551 176 GVGPLLLVPLLMRWLPESRAFAQAAGA---------------GK----Q--------R-------------A---PVLRA 212 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhHHhccCc---------------ch----h--------h-------------h---hhHHH
Confidence 765554444333322211000000000 00 0 0 0 00000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHH-HHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPIL-VATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSM 271 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~-~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~i 271 (482)
. + +. ...+....+...+ .....++.. .+.++....+ ...+ ....+.+.....+..
T Consensus 213 ~---------~---~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~--~g~s---~~~~~~~~~~~~~~~ 268 (406)
T PRK11551 213 L---------F---GE---GRATATLLLWISYFFTLIVLYFL----LNWLPSLLVG--QGLS---RSQAGLVQIAFNIGG 268 (406)
T ss_pred H---------h---hh---hhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh--CCCC---hhhhhHHHHHHHHHH
Confidence 0 0 00 0011111111111 111111111 1111111111 1111 011334555566666
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~ 351 (482)
++...+.+++.|++.+| +.+.++.+..+++++.+.+. .+.+++....+
T Consensus 269 ~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 316 (406)
T PRK11551 269 ALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALAAA---------------------PSFAGMLLAGF 316 (406)
T ss_pred HHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHhc---------------------CcHHHHHHHHH
Confidence 66777777776554333 22333444444444433321 13345555667
Q ss_pred HHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 352 l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.+++.....+...+++.+..|++.||+.+|+.+....+|+.+|+.+.+.+.+
T Consensus 317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 78888777888889999999999999999999999999999999999998764
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-14 Score=150.25 Aligned_cols=288 Identities=9% Similarity=-0.018 Sum_probs=162.6
Q ss_pred hhHHHHH-HHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhh
Q 011595 33 QLGIFFA-ALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~-~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i 111 (482)
+.+.+++ .+++.|++.|...+...+++.++++ + +|+++.++.+.+.++|..++|.+++++.+.+|||+.|++
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-R------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-h------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 3445544 3577899998876777788889885 2 589999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
.++..++..+..++.++....+++.+... ....+.... . .........+
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-----~------------~~~~~~~~~~ 227 (455)
T TIGR00892 179 LGGLLLHCCVCGALMRPVGPSQRVSKSKS--------------KEGLPPDGS-----T------------KKLSKKSTAE 227 (455)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccccc--------------cccCCCCCc-----c------------ccccccchhh
Confidence 99776666554444333111100000000 000000000 0 0000000000
Q ss_pred hhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHH
Q 011595 192 KAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSM 271 (482)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~i 271 (482)
.... . ..+ + +...+.+ .............+....+.+.....+ ...+ ....+.+..+..+..
T Consensus 228 ~~~~-~---~~~-----~-~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~~--~g~s---~~~~g~~~~~~~~~~ 289 (455)
T TIGR00892 228 KINR-F---LDF-----S-LFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAKD--KGVD---EYEAAFLLSIIGFVD 289 (455)
T ss_pred hhhh-h---cch-----H-HhcCchH---HHHHHHHHHHHHHccchHHHHHHHHHH--cCCC---HHHHHHHHHHHHHHH
Confidence 0000 0 000 0 0001111 111112222222333322222222221 1111 011345566677777
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~ 351 (482)
++..|+.+++.++. ..+ ......+.+++++.+++++++... .+.++++...+
T Consensus 290 ~~~~~~~g~l~d~~----~~~---~~~~~~~~~~~~~~~l~~ll~~~~---------------------~~~~~~~i~~~ 341 (455)
T TIGR00892 290 IFARPSCGLIAGLK----WIR---PHVQYLFSFALLFNGLTHLLCALA---------------------GDYTGLVIYCI 341 (455)
T ss_pred HHHHHHHHHHhccc----ccC---HHHHHHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHHH
Confidence 77788888775421 100 111222333444444444433221 14456677788
Q ss_pred HHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 352 l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.+++.....+...+.+.+.+|++.+|..+|+++...++|+.+|+.+.+.+.+
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~ 394 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD 394 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence 89999999999999999999999999999999999999999999999997764
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=143.05 Aligned_cols=294 Identities=14% Similarity=0.106 Sum_probs=175.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.+++.+ ..|...+.+.|++|++ +|+++++++..+.++|.+++|.+++++.+.++|+..|++.
T Consensus 106 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGG-FVPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 56778888899998865 4688888899998765 5899999999999999999999999999889999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCch-hhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPF-TRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~-~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
++..++..+..+...++.. +|++++. .+... ...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------------------------------------~~~ 213 (408)
T PRK09874 179 ASVLFLCFLVTLFCIRENF--QPVSKKEMLHMRE-------------------------------------------VVT 213 (408)
T ss_pred HHHHHHHHHHHHHHhccCc--ccccchhhhHHHH-------------------------------------------HHH
Confidence 8776666554333222110 1111000 00000 000
Q ss_pred hhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHH
Q 011595 192 KAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSM 271 (482)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~i 271 (482)
...+.+..+.+ ......+........+.+.....+...... ......+.+..+..+..
T Consensus 214 ------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l~~ 271 (408)
T PRK09874 214 ------------------SLKNPKLVLSL---FVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGVAA 271 (408)
T ss_pred ------------------hCcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHH
Confidence 00001111111 111111122222222222111111110100 00001123334455566
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~ 351 (482)
++..|+.+++.+++. +.+.+.++.++.+++++.+... .+.+......+
T Consensus 272 ~~~~~~~g~l~dr~g-----------~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 319 (408)
T PRK09874 272 LLSAPRLGKLGDRIG-----------PEKILITALIFSVLLLIPMSFV---------------------QTPLQLGILRF 319 (408)
T ss_pred HHHHHHHHHHHhccc-----------cchhHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHH
Confidence 666677777654332 2233455666655555443332 13345556677
Q ss_pred HHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHH
Q 011595 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFF 431 (482)
Q Consensus 352 l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~ 431 (482)
+.++++....|...+.+.+.+|++.+|..+|.+.....+|..+|+.+.+.+.+.. .+...|.+.
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~----------------g~~~~f~~~ 383 (408)
T PRK09874 320 LLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY----------------GFRAVFLVT 383 (408)
T ss_pred HHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc----------------chhHHHHHH
Confidence 8899999999999999999999999999999999999999999999998776421 124556666
Q ss_pred HHHHHHHHHHHHhhhhc
Q 011595 432 AILNVLNFVFFLVVAKF 448 (482)
Q Consensus 432 ~~l~~l~~ll~~~~~~~ 448 (482)
+++.+++.++.+...+|
T Consensus 384 ~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 384 AGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777766665554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-13 Score=138.25 Aligned_cols=258 Identities=12% Similarity=0.013 Sum_probs=164.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.+.+.+...|...++..+. + + ||++.++......++|.+++|.+++++.+++||+..|.+.
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-~------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-K------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-H------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 577788888889999999999988886543 2 1 5788999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++...+.++ .+...+. .+|+++... ... .+..++
T Consensus 165 ~~~~~~~~~-~~~~~~~---~~~~~~~~~------------~~~---------------------------~~~~~~--- 198 (382)
T TIGR00902 165 TAGLAFMLI-GFLIKPT---IPPKDAIPE------------DES---------------------------QGDSAF--- 198 (382)
T ss_pred HHHHHHHHH-HHHcCCC---CCCCccccc------------ccc---------------------------ccchhH---
Confidence 654333322 2222221 111110000 000 000000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCc---cccchhhHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPP---ASLIGFVTL 269 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~---~~~~~in~i 269 (482)
.++...|+++. +.+...+.+..+.+..+..+..-++ .| .+. +.+..++.+
T Consensus 199 ----------------~~~l~~~~~~~---~l~~~~l~~~~~~~~~~~~~~~l~~----~g----~s~~~~g~l~~~~~~ 251 (382)
T TIGR00902 199 ----------------IALLKNPMNLR---FLAAVCLIQGAHAAYYGFSAIYWQA----AG----ISASATGLLWGIGVL 251 (382)
T ss_pred ----------------HHHHcChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----CC----CCHhHHHHHHHHHHH
Confidence 00111122222 2223333344444444433222221 13 222 334444555
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHH
Q 011595 270 SMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQ 349 (482)
Q Consensus 270 ~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~ 349 (482)
..++..++.+++ .+| .++.+.+.+|.++.++.++.+.+.+ ++++++..
T Consensus 252 ~~i~~~~~~~~l----~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 299 (382)
T TIGR00902 252 AEIIIFAFSNKL----FQN-------CSARDLLLISAIACVGRWAIIGAIE---------------------AFPLIFLL 299 (382)
T ss_pred HHHHHHHHhHHH----Hhh-------CCHHHHHHHHHHHHHHHHHHHHhHh---------------------hHHHHHHH
Confidence 555444444444 555 4566677889999998887776542 44566666
Q ss_pred HHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHH-HHhhHHHHHhhhhhhhhcc
Q 011595 350 FVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSM-TTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 350 ~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~-l~~~iG~~lg~~l~~~~~~ 404 (482)
.++.++++.+..+....++.+. |++.+++++|+++ +..++|..+|+.++|.+.+
T Consensus 300 q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 300 QILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999988 9999999999986 5778999999999998875
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9e-13 Score=136.65 Aligned_cols=270 Identities=11% Similarity=-0.014 Sum_probs=159.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.|++.+...|...+.+.|.+|++ +|.+++++.+...++|..+||.+++++.++.+|++.|++.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 5667888899999999999999999999999865 5778899998888999999999999999989999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..+++.+..+...++.+++++++.+..+..+ +.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~ 208 (406)
T PRK15402 174 AALAALSFFGLWRAMPETAGRVGEKLSLKELGR---------------------------------------------DY 208 (406)
T ss_pred HHHHHHHHHHHHHhCCCCCccccccccHHHHHH---------------------------------------------HH
Confidence 877666655433322211000000000000000 00
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
..+...+.+..... ........+..+.+..+....+ +...+ . ...+.+...-.+..+
T Consensus 209 ----------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~-~~g~~-~--~~~g~~~~~~~~~~~ 265 (406)
T PRK15402 209 ----------------KLVLKNRRFVAGAL---ALGLVSLPLLAWIALSPVILIS-GEQLS-S--YEYGLLQVPVFGALI 265 (406)
T ss_pred ----------------HHHHcCcHHHHHHH---HHHHHHHHHHHHHHHhHHHHHH-HhCCC-H--HHHHHHHHHHHHHHH
Confidence 00000111111111 1111111111111111111100 01111 0 001222222233334
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+..++.+++. +| .+..+.+.+|.++.+++.+.+.+.... ...+.+|++...++
T Consensus 266 ~g~~~~g~l~----~r-------~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~ 318 (406)
T PRK15402 266 AGNLTLARLT----SR-------RPLRSLIRMGLWPMVAGLLLAALATVI----------------SSHAYLWLTAGLSL 318 (406)
T ss_pred HHHHHHHHHH----Hh-------cCHHHHHHHHHHHHHHHHHHHHHHHHc----------------ccccHHHHHHHHHH
Confidence 4445555553 33 233445677888777777766543200 01245677888899
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.++|+....+..+..... .+++.+|++.+++++...+|+.+|+.+.+.+.+
T Consensus 319 ~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 319 YAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988887777654 455899999999999999999999999988764
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-13 Score=136.45 Aligned_cols=261 Identities=9% Similarity=-0.001 Sum_probs=161.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.+++.+...|...++..|+ .+ +|+++++......++|.++||++++++.+++||+..|++.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~-------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~ 164 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW-QK-------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL 164 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh-------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 567777888889999999999988888876 21 4678899999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..+.. +..+ +.+|++++.+ .. . ....++
T Consensus 165 ~~~~~~~~~~~-~~~~---~~~~~~~~~~-------------~~----~----------------------~~~~~~--- 198 (382)
T PRK11128 165 TAGVASMLLGQ-LLRP---TIMPQGESRQ-------------QE----S----------------------AGWPAW--- 198 (382)
T ss_pred HHHHHHHHHHH-HccC---CCCCcccccc-------------cc----c----------------------cccchH---
Confidence 76544443322 2222 1112111000 00 0 000000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
.++...|.++.+ .+...+....+.+..+.......+. ... +...+.+..++.+..+
T Consensus 199 ----------------~~i~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~--g~s---~~~~g~~~~~~~~~~~ 254 (382)
T PRK11128 199 ----------------KALLKEPTVWRF---LLCVSLLQGSHAAYYGFSAIYWQAA--GYS---ASTIGYLWSLGVVAEV 254 (382)
T ss_pred ----------------HHHHcChhHHHH---HHHHHHHHHHhHhHHHHHHHHHHHC--CCC---HhHHHHHHHHHHHHHH
Confidence 001111222222 1222222233333333222221211 111 0113445556666555
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+...+.+++ .+| .+..+.+.++.++.+++++.+...+ ++++.++..++
T Consensus 255 ~~~~~~g~l----~~r-------~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l 302 (382)
T PRK11128 255 LIFAFSNRL----FRR-------WSARDLLLLSAICGVVRWGLMGSTT---------------------ALPWLIVIQIL 302 (382)
T ss_pred HHHHHHHHH----HHH-------CCHHHHHHHHHHHHHHHHHHHHhhh---------------------hHHHHHHHHHH
Confidence 555555555 444 3445557778888888776655431 45666778899
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHH-HHhhHHHHHhhhhhhhhcc
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSM-TTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~-l~~~iG~~lg~~l~~~~~~ 404 (482)
.++++.+..+.....+.+. |++.++.++++.+ +..++|..+|+.++|.+.+
T Consensus 303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887 5666799999886 6677888999999998875
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=143.39 Aligned_cols=262 Identities=10% Similarity=0.054 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+.+.+.+.+...|...+...|.++++ +|++++++.+...|+|.++||.+++++.+ ++|+..|.+.
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 3445556666777777888889999999999865 58999999999999999999999999875 7999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..+++++...+..++. +++++++..+. . +.
T Consensus 168 ~~~~~i~~i~~~~~~~~~--~~~~~~~~~~~-------~---------------------------------------~~ 199 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRS--EKAIATETGSV-------W---------------------------------------SP 199 (395)
T ss_pred HHHHHHHHHHHHHHHhcc--ccccccchhhh-------h---------------------------------------hh
Confidence 877776654433322211 11111000000 0 00
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhhHHHhHhhcccCCCCCeeeCccccchhhHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQI---NTLFVKQGTTLDRAIGSSFKIPPASLIGFVTL 269 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~---~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i 269 (482)
.+....|.++.+. +...+....+... ...+..... +.... +...+.+..++.+
T Consensus 200 ----------------~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~g~~~~~~~~ 255 (395)
T PRK10054 200 ----------------SVLLQDKALLWFT---CSGFLASFVSGAFASCISQYVMVVA--DSDFA---EKVVAVVLPVNAA 255 (395)
T ss_pred ----------------hhhccCceehHHH---HHHHHHHHHHHHhhhhHHHHHHHhc--ccchH---HHHHHHHHHhhhh
Confidence 0000111211111 1111111111111 112211111 11111 0112345555665
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHH
Q 011595 270 SMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQ 349 (482)
Q Consensus 270 ~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~ 349 (482)
..+.+++..+++. +| .++.+.+.+|+++.++++....+.. .+.+.+.+.
T Consensus 256 ~~~~~~~~~g~~~----~~-------~~~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~ 304 (395)
T PRK10054 256 MVVSLQYSVGRRL----NA-------ANIRPLMTAGTLCFVIGLVGFIFSG--------------------NSLLLWGMS 304 (395)
T ss_pred heeeehhHHHHHH----cc-------CCchhHHHHHHHHHHHHHHHHHHcc--------------------hHHHHHHHH
Confidence 5555555555543 33 2344556778877777776554321 133334556
Q ss_pred HHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccc
Q 011595 350 FVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNI 405 (482)
Q Consensus 350 ~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~ 405 (482)
.++.++||....|...+.+.+.+|++++|.+.|..+ ...+|..+||.+++.+.+.
T Consensus 305 ~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~ 359 (395)
T PRK10054 305 AAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT 359 (395)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998765 4558999999999988753
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-13 Score=137.11 Aligned_cols=276 Identities=9% Similarity=0.054 Sum_probs=169.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|+|.+...|...+.+.|.+|++ +|+++++++..+.++|.++||++++++.+++||+..+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 6778889999999999999999999999999875 5899999999999999999999999998889999877655
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
.+..++. +.+.+ +.++.+++++...+..
T Consensus 185 ~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~------------------------------------------------ 212 (392)
T PRK12382 185 MVLPLLA---WAFNG-TVRKVPAHAGERPSLW------------------------------------------------ 212 (392)
T ss_pred HHHHHHH---HHHHH-hccCCCCCcccCchHH------------------------------------------------
Confidence 4332222 22211 1111111100000000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHH-HHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAM-IPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSM 271 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~-~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~i 271 (482)
+..|.+.+. ....+....+.... .....+ .+ + .... ..+.......+..
T Consensus 213 -------------------~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~--~--~~~~-----~~~~~~~~~~~~~ 262 (392)
T PRK12382 213 -------------------SVVGLIWKPGLGLALQGVGFAVIG-TFVSLY-FA--S--KGWA-----MAGFTLTAFGGAF 262 (392)
T ss_pred -------------------HHHHHHHHhHHHHHHHHHHHhHHH-HHHHHH-HH--h--cCCc-----hhHHHHHHHHHHH
Confidence 000111100 00001111111110 000111 11 1 1111 1222334455555
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~ 351 (482)
++..++.+++.++..+ .+.+.++..+.+++++...+.+ +.++..+..+
T Consensus 263 ~~~~~~~g~l~~r~g~-----------~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~ 310 (392)
T PRK12382 263 VLMRVLFGWMPDRFGG-----------VKVAIVSLLVETVGLLLLWLAP---------------------TAWVALAGAA 310 (392)
T ss_pred HHHHHHHHHHHHhcCC-----------CeehHHHHHHHHHHHHHHHHcc---------------------cHHHHHHHHH
Confidence 6666777776543322 2335667777777776554321 3345566778
Q ss_pred HHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHH
Q 011595 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFF 431 (482)
Q Consensus 352 l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~ 431 (482)
+.++++....|.......+..|+++||+++|+++....+|+.+|+.+.+.+.+..+ +...|.+.
T Consensus 311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g----------------~~~~~~~~ 374 (392)
T PRK12382 311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG----------------YPSVFLAG 374 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------chHHHHHH
Confidence 89999999899888888999999999999999999999999999999998764221 23456666
Q ss_pred HHHHHHHHHHHHh
Q 011595 432 AILNVLNFVFFLV 444 (482)
Q Consensus 432 ~~l~~l~~ll~~~ 444 (482)
+++.+++.++.+.
T Consensus 375 ~~~~~~~~~~~~~ 387 (392)
T PRK12382 375 AISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-13 Score=143.73 Aligned_cols=316 Identities=10% Similarity=0.039 Sum_probs=175.3
Q ss_pred CCCCcchhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccc
Q 011595 26 CKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGW 105 (482)
Q Consensus 26 ~~~~~~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~ 105 (482)
|..++ +.+.++++++++|+|.|+..|...+.+.+.+++++ +|.++++++....++|..+||.+++++.+++||
T Consensus 88 ~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw 160 (495)
T PRK14995 88 AAFSP--TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW 160 (495)
T ss_pred HHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence 44444 78889999999999999999999998988886432 689999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHH---------HHHHhcCCCCCCCCccccccchhhhhhh
Q 011595 106 TLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIV---------AAIRKWNVPLPTNPKELYELDLEDYAQK 176 (482)
Q Consensus 106 ~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~---------~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (482)
|+.|++.....++.+++.+...++-+++ +.+..+..+.+. ....... +.......... ....
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~---~~~~~d~~g~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~-----~~~~ 231 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPRQAGR---RDQPLNLGHALMLIVAILLLVYSAKTAL-KGFLSLWVTSL-----TLLT 231 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCCCChHhHHHHHHHHHHHHHHHHhcc-ccCCchHHHHH-----HHHH
Confidence 9999998876666655444433321111 111122222111 1111100 00000000000 0000
Q ss_pred ccccccCCccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCe
Q 011595 177 WKYMIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSF 256 (482)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~ 256 (482)
+. ....-....+.....|.. +.+ .-..|.+.... +..+.....+......++. .++...|. -
T Consensus 232 ~~--------~~l~~f~~~e~~~~~p~~--~~~-lf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~lq~v~g~-s 293 (495)
T PRK14995 232 GA--------LLLGLFIRTQLAASRPMI--DMR-LFTHRIILSGV---VMAMTAMITLVGFELLMAQ---ELQFVHGL-S 293 (495)
T ss_pred HH--------HHHHHHHHHHhcCCCCCc--CHH-HhCCcccHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHcCC-C
Confidence 00 000000000000000000 000 00011111111 1111111111111111111 11111120 0
Q ss_pred eeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCC
Q 011595 257 KIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKG 336 (482)
Q Consensus 257 ~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (482)
....+.+.....+...+..|+.+++.++. ++.+.+..|+++.+++++.+....
T Consensus 294 ~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-----------g~~~~~~~g~~~~~~~~~~l~~~~---------------- 346 (495)
T PRK14995 294 PLEAGMFMLPVMVASGFSGPIAGILVSRL-----------GLRLVATGGMALSALSFYGLAMTD---------------- 346 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CchHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 01123444555666677777877775433 223345678888888876654431
Q ss_pred CcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 337 QQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 337 ~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
...+.++..+..++.|+|..+..++....+.+.+|++.+|.++++++...++|+.+|+.+.+.+..
T Consensus 347 --~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 347 --FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred --CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011334455677889999999999999999999999999999999999999999999999887753
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.9e-13 Score=135.46 Aligned_cols=291 Identities=13% Similarity=0.114 Sum_probs=177.7
Q ss_pred CCCCcchhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccc
Q 011595 26 CKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGW 105 (482)
Q Consensus 26 ~~~~~~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~ 105 (482)
|..++ +.+.+.++|++.|+.-|.+.+...++.+|..|++ ||.++.++.+.+..+.-++|.+++.++.|.+||
T Consensus 95 ~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 95 SALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 34455 8899999999999999999999999999999998 689999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHhcCcceeecCCCC--CchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccC
Q 011595 106 TLGYGLPTLGLSISIAIFFAGTPFYRHKKPTG--SPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDS 183 (482)
Q Consensus 106 ~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~--~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (482)
|..|++.++..++..+..+...+ +...++. +++.+..+
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~-------------------------------------- 206 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLLR-------------------------------------- 206 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHH--------------------------------------
Confidence 99999988776666665555444 1111100 11000000
Q ss_pred CccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeee-Cccc
Q 011595 184 TQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKI-PPAS 262 (482)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i-~~~~ 262 (482)
+..+.+ +...++...++ +.-++..|++....+....+ ++. ..++
T Consensus 207 ---------------------------~l~~p~---v~~~l~~t~l~---~~g~F~~ftYi~P~L~~v~g--~s~~~vs~ 251 (394)
T COG2814 207 ---------------------------LLRRPG---VLLGLLATFLF---MTGHFALYTYIRPFLESVAG--FSVSAVSL 251 (394)
T ss_pred ---------------------------HhcCch---HHHHHHHHHHH---HcchhhhHHhHHHHHHHccC--CCHhHHHH
Confidence 000111 11111222222 22222222222222221112 111 2345
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccch
Q 011595 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLT 342 (482)
Q Consensus 263 ~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 342 (482)
...+.++..++...+.+++.|+ ++.+-+...+.+.++.++.+.+.. -+
T Consensus 252 ~Ll~~Gv~~~~Gn~~gGrl~dr------------~~~~~l~~~~~l~a~~~l~l~~~~--------------------~~ 299 (394)
T COG2814 252 VLLAFGIAGFIGNLLGGRLADR------------GPRRALIAALLLLALALLALTFTG--------------------AS 299 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhccc------------cchhHHHHHHHHHHHHHHHHHHhc--------------------ch
Confidence 5666666666666666666432 233445566677777776655432 23
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcc
Q 011595 343 IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVS 422 (482)
Q Consensus 343 ~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~ 422 (482)
.+..+...++++++-....+..+....+.+ ++.++..++++....++|..+|..+++.+.+..
T Consensus 300 ~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~---------------- 362 (394)
T COG2814 300 PALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDAL---------------- 362 (394)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------
Confidence 344455555555544444444444444422 466889999999999999999999999887521
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 423 HLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 423 ~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
.+....+..+.+.+++.++.+...++
T Consensus 363 g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 363 GYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12344455555555555554444444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-13 Score=157.64 Aligned_cols=287 Identities=10% Similarity=0.011 Sum_probs=167.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.++++|++.+++.|...+++.|+++++ +|.++++++.++.++|.++||+++|++.+..+|++.|.+.
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~ 180 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL 180 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 6788999999999999999999999999999986 5899999999999999999999999999999999998444
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++++++.+...+ .+..+++.+......+-....
T Consensus 181 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 217 (1140)
T PRK06814 181 MGIAVLGWLASLFIPK-TGNAAPDLKIDRNIIRSTITL------------------------------------------ 217 (1140)
T ss_pred HHHHHHHHHHHhhCCC-CCCCCCCCeeccchHHHHHHH------------------------------------------
Confidence 4443333333222211 111000000000000000000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
+ ..+...+.++. +.+....++..+....+.++....+ .++ .-....+++.....+.++
T Consensus 218 ----------~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~---~~g-~~~~~~g~~~~~~~~g~~ 275 (1140)
T PRK06814 218 ----------L-----KYAKADKRIWL---AILGISWFWLVGAVVLSQLPLLAKE---TLG-GDENVATLFLAVFSVGVA 275 (1140)
T ss_pred ----------H-----HHHhcCchHHH---HHHHHHHHHHHHHHHHHHhHHHHHH---HcC-CchHHHHHHHHHHHHHHH
Confidence 0 00001111111 1222222233332222222222211 112 000113456677777777
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhcCCccCCCcccchHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYR-LSVAKDHSIVEKGQQVPLTIFVLLPQFV 351 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~is~~~li~~~~ 351 (482)
+...+.+++. +++ ...+.+.+|.++.+++.+.+.+..... ........+. .-....+.|++++..+
T Consensus 276 ig~~~~g~l~----~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 342 (1140)
T PRK06814 276 VGSFLASKLS----EGR-------ITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL--VFLSKRHGWRILIDLF 342 (1140)
T ss_pred HHHHHHHHHh----CCc-------eeeeeehHHHHHHHHHHHHHHhcccccccccccccchh--hhhcccccHHHHHHHH
Confidence 7777777763 221 111223444444444443333210000 0000000000 0000124466778889
Q ss_pred HHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 352 l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+.+++..+..+...+++.+.+|++++|+++|++++...+|..+|+++++.+.
T Consensus 343 ~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 343 GLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988875
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=138.02 Aligned_cols=311 Identities=9% Similarity=0.011 Sum_probs=169.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|+|.|...|...+.+.|.+|++ +|.++++++....++|..+||.+++++.++.||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 5677889999999999999999999999999854 5889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHH-------HHhcCCCCCCCCc-cccccchhhhhhhccccccCC
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAA-------IRKWNVPLPTNPK-ELYELDLEDYAQKWKYMIDST 184 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 184 (482)
.+...++.+......++.+.+ +.+ .+..+..... ......+...... ..... ...+ ..
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~~-~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~--- 236 (471)
T PRK10504 171 IPVGIIGAIATLMLMPNYTMQ-TRR---FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGL-----VAVG--VV--- 236 (471)
T ss_pred HHHHHHHHHHHHHhCCCcccc-CCC---CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHH-----HHHH--HH---
Confidence 876666655444433322211 111 1111111100 0000000000000 00000 0000 00
Q ss_pred ccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccc
Q 011595 185 QNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLI 264 (482)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~ 264 (482)
.-.....+++... .+. .+ .++...|.+. ......+.++..+.......++.-+. ..+. -....+...
T Consensus 237 --~~~~~~~~~~~~~-~~~--~~-~~l~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~---~~g~-~~~~~g~~~ 303 (471)
T PRK10504 237 --ALLLYLLHARNNN-RAL--FS-LKLFRTRTFS---LGLAGSFAGRIGSGMLPFMTPVFLQI---GLGF-SPFHAGLMM 303 (471)
T ss_pred --HHHHHHHHHhcCC-CCc--cC-HHHhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HcCC-CHHHHHHHH
Confidence 0000000000000 000 00 0011112221 12222233333332222211111111 1120 001112233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHH
Q 011595 265 GFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIF 344 (482)
Q Consensus 265 ~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~ 344 (482)
....+..++..++.+++. +|+ ++.+.+.+|.++.+++..++.+.. . ..+.+
T Consensus 304 ~~~~~~~~~~~~~~~~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~~~ 354 (471)
T PRK10504 304 IPMVLGSMGMKRIVVQVV----NRF-------GYRRVLVATTLGLALVSLLFMLVA-----------------L-LGWYY 354 (471)
T ss_pred HHHHHHHHHHHHHHHHHH----HHc-------CchHHHHHHHHHHHHHHHHHHhcc-----------------c-cccHH
Confidence 333444444445666654 442 334445667777776655544321 0 11233
Q ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccc
Q 011595 345 VLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNI 405 (482)
Q Consensus 345 ~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~ 405 (482)
++....++.+++..+..+.......+..|++.+|.++|++++...+|..+|+.+.+.+.+.
T Consensus 355 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 355 LLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888999999999999999999999999999999999999999999999877543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-13 Score=141.10 Aligned_cols=268 Identities=12% Similarity=0.126 Sum_probs=172.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhh
Q 011595 32 LQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGL 111 (482)
Q Consensus 32 ~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i 111 (482)
.+.+.+++..++.+++.+...|..++++.+..|++ +..++.++.....|+.-++||.++|.+...+|..+.|++
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 46778888889999999999999999999999976 578999999999999999999999999888899999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
.++..+++++.+...++.. +++..+..+..+-+...++
T Consensus 175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~r--------------------------------------- 212 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPP---PPSSLPRERFFSALREGLR--------------------------------------- 212 (524)
T ss_pred HHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHHH---------------------------------------
Confidence 9988877765544433221 1111111111111111110
Q ss_pred hhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHH
Q 011595 192 KAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSM 271 (482)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~i 271 (482)
| +...+.+..++. ...++.....-....++...++ ..+.+ ....+.+.+.-++..
T Consensus 213 -----y-------------v~~~~~l~~~l~---~~~~~~l~~~a~~aLlPl~a~~-~l~~~---a~~yGll~a~~gvGa 267 (524)
T PF05977_consen 213 -----Y-------------VRSSPPLRSVLL---RSFLFNLFASAVWALLPLFARD-VLGGG---ASGYGLLLAAFGVGA 267 (524)
T ss_pred -----H-------------HhcchHHHHHHH---HHHHHHHhhhHHHHhhhHHHHH-HhCCc---HHHHHHHHHHHHHHH
Confidence 0 001111111111 1111222111112223333321 11111 011223333333333
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~ 351 (482)
++. -++.+..++. .+..+.+..+.++.+++++.+++.. +.|...+..+
T Consensus 268 i~G-----al~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~~---------------------~~~~~~~~l~ 315 (524)
T PF05977_consen 268 ILG-----ALLLPRLRRR------LSSRRLVLLASLLFALALLLLALSP---------------------SFWLALIALF 315 (524)
T ss_pred HHH-----HHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcch---------------------HHHHHHHHHH
Confidence 333 3333333442 3445556778888887777766532 4566677888
Q ss_pred HHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 352 l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.|++.........+.+.+.+|+++||+.++++......+..+|+.+.|.+.+
T Consensus 316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998875
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=129.88 Aligned_cols=262 Identities=15% Similarity=0.199 Sum_probs=183.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.+++.+...|...+++.|.+|++ +|++++++.+...++|..+++.+++++.++.+|+..|++.
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5678889999999999999999999999999985 5899999999999999999999999999988999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..+++.+...+.. |
T Consensus 160 ~~~~~~~~~~~~~~~-------~--------------------------------------------------------- 175 (352)
T cd06174 160 AILGLLLALLLLFLL-------R--------------------------------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHH-------H---------------------------------------------------------
Confidence 877666655433221 0
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
.+.... .....+...+......++....+. .+.+ ....+.+..++.+..+
T Consensus 176 -----------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~ 225 (352)
T cd06174 176 -----------------------LLLLLA---LAFFLLSFGYYGLLTYLPLYLQEV-LGLS---AAEAGLLLSLFGLGGI 225 (352)
T ss_pred -----------------------HHHHHH---HHHHHHHhHHHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHHHHH
Confidence 000000 011111111111111111111110 0111 0113456677777788
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQ-RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~-k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~ 351 (482)
+..++.+++.+|..+| + .+.++..+..++.+.....+ +.++.....+
T Consensus 226 i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~ 273 (352)
T cd06174 226 LGALLGGLLSDRLGRR-----------RLLLLIGLLLAALGLLLLALAP---------------------SLALLLVALL 273 (352)
T ss_pred HHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHhc---------------------cHHHHHHHHH
Confidence 8888888775544333 2 56778888888877765432 2466778889
Q ss_pred HHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHH
Q 011595 352 LMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFF 431 (482)
Q Consensus 352 l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~ 431 (482)
+.++++....+...+.+.+..|++.||+.+|+++...++|+.+++.+.+.+.+.. ++...|.+.
T Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~----------------~~~~~~~~~ 337 (352)
T cd06174 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG----------------GYGGVFLIL 337 (352)
T ss_pred HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------CcchHHHHH
Confidence 9999999999999999999999999999999999999999999999998876311 123445566
Q ss_pred HHHHHHHHHHH
Q 011595 432 AILNVLNFVFF 442 (482)
Q Consensus 432 ~~l~~l~~ll~ 442 (482)
+++.+++.+++
T Consensus 338 ~~~~~i~~i~~ 348 (352)
T cd06174 338 AALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-14 Score=141.00 Aligned_cols=267 Identities=13% Similarity=0.161 Sum_probs=163.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|++.+...|...+++.|++|++ +|+++++++..+.++|.+++|.+++++.++++|++.|++.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 4558899999999999999999999999999986 5899999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..++.....++-+.++++.++.++. .+.. ..+.+
T Consensus 158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------~~~~---------------~~~~~- 197 (352)
T PF07690_consen 158 AILSLIAAILFILFLPEPPPPRERESPKESE------------------------SKKP---------------KPLKP- 197 (352)
T ss_dssp HHHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HH---------------HCCCH-
T ss_pred cchhhhhhhhHhhhhhhcccccccccccccc------------------------cccc---------------ccccc-
Confidence 9887777664333322111100000000000 0000 00000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCee--eCccccchhhHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFK--IPPASLIGFVTLS 270 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~--i~~~~~~~in~i~ 270 (482)
.+ +...+.+.++ .+......+...+.......+.. +....+ ++ ...+.+..+..+.
T Consensus 198 ---------~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~--~~~~~~~~~~~~~~~~~ 255 (352)
T PF07690_consen 198 ---------GF-----KSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLY---LQEVLG--FSGPSQAGLLFSIFGIV 255 (352)
T ss_dssp ----------C-----THHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHH---CCHHHH--CCTHHHHHHHHHHHHHH
T ss_pred ---------cc-----ccccccchhh---hhhhhhhHHHHHHHHhhcccchh---hhhccC--CCHHHHHHHHHHHHHHH
Confidence 00 1111222111 11112222222222222222221 011111 11 1123445666666
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHH
Q 011595 271 MLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQF 350 (482)
Q Consensus 271 ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~ 350 (482)
.++..++.+++.+|+ +..++..+......++.+.+.+... ..+..|.+...
T Consensus 256 ~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 306 (352)
T PF07690_consen 256 GIIGSLLAGRLSDRF-----------GRRRRLLIAILLLILGALGLLLLPF------------------SSSPVWLIIAL 306 (352)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHHHHCCSHH------------------HCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-----------CcHHHHHHHHHHHHHHHHHHHHHHH------------------hhhHHHHHHHH
Confidence 666677777775432 2233344444444444444332210 12446777788
Q ss_pred HHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhh
Q 011595 351 VLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFST 396 (482)
Q Consensus 351 ~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~ 396 (482)
++.+++..+..+...+.+.+.+|++.+|+++|+.+...++|+.+||
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 307 FLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8899999999999999999999999999999999999999999986
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.9e-13 Score=139.14 Aligned_cols=311 Identities=14% Similarity=0.071 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+...+.+++++.|+|.|...|...+++.|.+|++ +|++++++++...++|..+||.+++++.++++|++.|++.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 6778899999999999999999999999999865 6899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHH---------HHhcCCCCCCCCc-cccccchhhhhhhcccccc
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAA---------IRKWNVPLPTNPK-ELYELDLEDYAQKWKYMID 182 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 182 (482)
++..++..+..++..++. +++.....+..+....+ ..+... ...... .... ....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~----- 228 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRD---KPAASENFDFLGLLLLSVGLGSLLYGLSEGPE-RGWFDSNEILI-----LSITG----- 228 (485)
T ss_pred hHHHHHHHHHHHHHcCCc---cccccCCCcHHHHHHHHHHHHHHHHHHhhCCC-CCCCCchHHHH-----HHHHH-----
Confidence 866665555443333321 11111112222211111 111000 000000 0000 00000
Q ss_pred CCccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccc
Q 011595 183 STQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPAS 262 (482)
Q Consensus 183 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~ 262 (482)
................+. .+.+.-..+.+ ....+........+......++....+ ..+. -....+.
T Consensus 229 ---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g~-s~~~~g~ 295 (485)
T TIGR00711 229 ---LVAIIAFVVWELTDDNPL---VDLRLFKYRNF---TIGCVYMSLLGLGLYGSFYLLPLYLQQ---VLGY-TALQAGL 295 (485)
T ss_pred ---HHHHHHHHHHHHcCCCCc---cCHHHHcCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCC-CHHHHHH
Confidence 000000000000000000 00000001111 111112222222222222222211111 1120 0011234
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccch
Q 011595 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLT 342 (482)
Q Consensus 263 ~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 342 (482)
+.....+..++..|+.+++.++. ++.+.+.+|..+.+++.+++.+.. ....+
T Consensus 296 ~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~g~~~~~~~~~~~~~~~-----------------~~~~~ 347 (485)
T TIGR00711 296 HILPVGLAPMLSSPIAGRMGDKI-----------DPRKLVTIGLILYAVGFYWRAFTF-----------------TPDTP 347 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----------CcHHHHHHHHHHHHHHHHHHhccC-----------------CCCCC
Confidence 55666777777788888774432 333446778888887777655210 11224
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 343 IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 343 ~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.++.+...++.++|..+..++....+.+..|++++|.++|+.+....+|+.+|+.+.+.+.+
T Consensus 348 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 348 FLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566668899999999988888888899999999999999999999999999999987763
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-12 Score=129.20 Aligned_cols=284 Identities=12% Similarity=0.093 Sum_probs=159.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhh--HHHHHHHHHHHHHHHHhHhHhhhhhcccccchhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLS--FFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYG 110 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~--~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~ 110 (482)
+.+.+++.+++++.+.+...|...++..|+.+++ +|.+ .+++.+...++|.++||.+++++.+++|||+.|+
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~ 159 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRT------GREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFL 159 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc------chhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHH
Confidence 5566677778888888888898888888877643 2333 3688888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhh
Q 011595 111 LPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFF 190 (482)
Q Consensus 111 i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (482)
+.++..++..+..++..++. |+.++.. .. . . ++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------~~----~-~------------------------~~- 192 (375)
T TIGR00899 160 TAALAFVLCGVLVWLFLPSY----PRGAPGA-------------LT----R-L------------------------EV- 192 (375)
T ss_pred HHHHHHHHHHHHHHHhCCCc----ccCcccc-------------cC----c-c------------------------hh-
Confidence 98877666655443333321 1111000 00 0 0 00
Q ss_pred hhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH-hHhhcccCCCCCeeeCccccchhhHH
Q 011595 191 NKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVK-QGTTLDRAIGSSFKIPPASLIGFVTL 269 (482)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~-~~~~~~~~~~~g~~i~~~~~~~in~i 269 (482)
++....+.+... +......+..+......++. ..+.... + ....+.+..++.+
T Consensus 193 ------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~---~~~~g~~~~~~~~ 246 (375)
T TIGR00899 193 ------------------RGLLASRDTRLL---FVACTLMWGCNILYIINMPLLIIHELGL--P---DKLAGLMMGTAAG 246 (375)
T ss_pred ------------------hhhhcCcchHHH---HHHHHHHHHHHHHHHhhhHHHHHHHcCC--C---HHHHHHHHHHHHH
Confidence 000000111111 11111112211111111111 1111111 1 0012233344444
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHH
Q 011595 270 SMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQ 349 (482)
Q Consensus 270 ~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~ 349 (482)
..++..++.+++.++..+ .+.+.++.++.++.+...... .+.+..+..
T Consensus 247 ~~~~~~~~~g~l~~r~g~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 294 (375)
T TIGR00899 247 LEIPFMLLAGYLIKRFGK-----------RRLMLLAALAGVAFYTGLAAD---------------------NSLWALLML 294 (375)
T ss_pred HHHHHHHhHHHHHHHhcc-----------hhHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence 445555666666543322 223344554444443332221 133444555
Q ss_pred HHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHH
Q 011595 350 FVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYA 429 (482)
Q Consensus 350 ~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~ 429 (482)
.++.+++.....+..+.++.+..|++ ++.++|+++....+|..+|+.+.+.+.+..+ +...|.
T Consensus 295 ~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g----------------~~~~~~ 357 (375)
T TIGR00899 295 QLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS----------------YHAVYW 357 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------chhHHH
Confidence 67778888888888888888888875 5699999999999999999999988764211 234455
Q ss_pred HHHHHHHHHHHHHHh
Q 011595 430 FFAILNVLNFVFFLV 444 (482)
Q Consensus 430 ~~~~l~~l~~ll~~~ 444 (482)
+.+++.+++.+++..
T Consensus 358 ~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 358 FAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHhe
Confidence 666666666555433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-12 Score=130.88 Aligned_cols=82 Identities=9% Similarity=0.127 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.|++.|...|...+++.|++|++ +|+++++++..+.|+|.++||.+++++.+++|||+.|++.
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 180 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA 180 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 6788899999999999999999999999999865 6899999999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q 011595 113 TLGLSISI 120 (482)
Q Consensus 113 ~i~~~l~~ 120 (482)
++..++..
T Consensus 181 ~~l~~~~~ 188 (394)
T PRK10213 181 AVMGVLCI 188 (394)
T ss_pred HHHHHHHH
Confidence 76544443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=137.22 Aligned_cols=310 Identities=14% Similarity=0.163 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc-ccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN-MGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~-~g~~~~F~i 111 (482)
+.+.+++.|+++|+++|...|++..+.+.|.|++ ||+++.++.+.+..+|.+++.+++|+|-+. +||+.+|++
T Consensus 127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 4456789999999999999999999999999987 589999999999999999999999999988 999999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhh--HHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchh
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKKPTGSPFTR--MAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRF 189 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (482)
.++..++-.+++++... + .|++++... ..+-+........
T Consensus 201 ~g~~g~i~~~~w~~~~~---d-~P~~h~~is~~El~~I~~~k~~~~---------------------------------- 242 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLFYS---D-SPSKHPNISEKELKYIEKGKSEAH---------------------------------- 242 (466)
T ss_pred HHHHHHHHHHHHHHHhc---C-CcccCCCCCHHHHHHHHhcccccc----------------------------------
Confidence 99655544443333222 2 233332111 0000000000000
Q ss_pred hhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHH---HHH-HHHHHh--hcchhhHHHhHhhcccCCCCCeeeCcccc
Q 011595 190 FNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILV---ATF-VPSTML--AQINTLFVKQGTTLDRAIGSSFKIPPASL 263 (482)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~---~~~-~~~~~~--~q~~s~~~~~~~~~~~~~~~g~~i~~~~~ 263 (482)
.+. ....|| |.+++-.++++ ..+ -.|..+ .|...+|.....++|.. ..+++
T Consensus 243 ---~~~--~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~-------~~G~~ 299 (466)
T KOG2532|consen 243 ---VKK--KPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVR-------ETGFL 299 (466)
T ss_pred ---cCC--CCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChh-------hhhHH
Confidence 000 001233 22222122222 221 122222 22223443333334332 25688
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 264 IGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRM--GIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 264 ~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~--~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
.+++.+...+...+.+.+.|++.+| ... ....+|+ .+++...++.++.+++.. . . .
T Consensus 300 salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------------~--~-~- 357 (466)
T KOG2532|consen 300 SALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------------D--E-H- 357 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------------C--C-c-
Confidence 8899999999999999999988776 322 2344455 344444444454444331 0 0 0
Q ss_pred hHHHHHHHHHHHhHHHHHhhh--hhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 342 TIFVLLPQFVLMGTADAFLEV--AKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp--~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
. ..+.++++++..+.+- .|..-.....-+++-+..+|+.+....+.+.++|.+++.+.. ++ +..+|
T Consensus 358 --~--~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~eW----- 425 (466)
T KOG2532|consen 358 --R--LLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TREEW----- 425 (466)
T ss_pred --c--hHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHHHH-----
Confidence 1 2334445554444443 333333333134668999999999999999999999998874 21 22233
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 420 ~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
...|++.+++.+++.++|.+..+-
T Consensus 426 -----~~VF~i~a~i~~~~~i~f~~f~s~ 449 (466)
T KOG2532|consen 426 -----RIVFLIAAGILIVGNIIFLFFGSG 449 (466)
T ss_pred -----HHHHHHHHHHHHHhchheeEeecC
Confidence 567889999999999888887533
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-12 Score=130.82 Aligned_cols=258 Identities=11% Similarity=0.071 Sum_probs=152.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc-cccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM-GWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~-g~~~~F~i 111 (482)
+...+++++++.|+|.|...+...+++.|++| + ||+++++++..+.++|..+|+.+++++.+++ +||..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 56778899999999999999999999999987 3 4799999999999999999999999998875 89998876
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
.++..++.+..++...++ +|+.++.. ..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~----~~~~~~~~-------------~~~---------------------------------- 197 (393)
T PRK09705 169 WALPAVVALFAWWWQSAR----EVASSHKT-------------TTT---------------------------------- 197 (393)
T ss_pred HHHHHHHHHHHHHHHhcC----CCccccCC-------------CcC----------------------------------
Confidence 655444433333222111 12111000 000
Q ss_pred hhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHH
Q 011595 192 KAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSM 271 (482)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~i 271 (482)
+. +...+ +..+.... ....+...+....+.++..-.+. ... ....+.+..+..+..
T Consensus 198 ----------~~-----~~l~~-~~~~~l~~---~~~~~~~~~~~~~~~lp~~l~~~--g~s---~~~ag~~~~~~~i~~ 253 (393)
T PRK09705 198 ----------PV-----RVVFT-PRAWTLGV---YFGLINGGYASLIAWLPAFYIEI--GAS---AQYSGSLLALMTLGQ 253 (393)
T ss_pred ----------Cc-----ccccC-HhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHc--CCC---hhhhhHHHHHHHHHH
Confidence 00 00001 11111111 11111122222222221111111 111 011234555666666
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFV 351 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~ 351 (482)
++..++.+++ .+| .+..+.+.+|+.+.+++++.+.... .+..+. ...
T Consensus 254 i~g~~~~g~l----~~r-------~~~~~~~~~~~~l~~~~~~~~~~~~--------------------~~~~~~--~~~ 300 (393)
T PRK09705 254 AAGALLMPAM----ARH-------QDRRKLLMLALVLQLVGFCGFIWLP--------------------LQLPVL--WAM 300 (393)
T ss_pred HHHHHHHHHH----Hhh-------ccchHHHHHHHHHHHHHHHHHHHcc--------------------chHHHH--HHH
Confidence 6666666655 333 2233445667777777765543221 111121 124
Q ss_pred HHhHHHHHhhhhhHHHHHhhcC-chhhHHHHHHHHHHhhHHHHHhhhhhhhhccc
Q 011595 352 LMGTADAFLEVAKIEFFYDQAP-ENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNI 405 (482)
Q Consensus 352 l~~lgE~l~sp~~~~~~~~~aP-~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~ 405 (482)
+.++|.....|.....+.+..| ++.+|..+|+.+....++..+||.+.+.+.+.
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~ 355 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSI 355 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777877777777775 67899999999999999999999999887753
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.4e-12 Score=130.54 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.+++.|...|...+++.+++|++ +|++++++++.+.++|..+++.+++++.+++|||+.|++.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5667777888899999999999999999999865 5899999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 011595 113 TLGLSIS 119 (482)
Q Consensus 113 ~i~~~l~ 119 (482)
++..++.
T Consensus 184 ~i~~~~~ 190 (434)
T PRK11663 184 GIIAIVV 190 (434)
T ss_pred HHHHHHH
Confidence 8654444
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-12 Score=132.51 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh--------hccc
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ--------DNMG 104 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~--------~~~g 104 (482)
....++++|++.|++.|+..|...++++|++|++ +|+++++++..+..+|.++++.+++.+. +++|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 4567889999999999999999999999999976 5899999999999999999988776543 4579
Q ss_pred ccchhhhhHHHHHHHHHHH
Q 011595 105 WTLGYGLPTLGLSISIAIF 123 (482)
Q Consensus 105 ~~~~F~i~~i~~~l~~i~~ 123 (482)
||+.|++.++..++..+..
T Consensus 193 Wr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLL 211 (479)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999998876665554433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-12 Score=131.69 Aligned_cols=85 Identities=15% Similarity=0.278 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhH---hhhhhcccccchh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVL---VYIQDNMGWTLGY 109 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~---~~L~~~~g~~~~F 109 (482)
+.+.+++++++.|+|.|...+...++++|++|++ +|++++++++.+.++|.++++.++ +.+.+..+||+.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 4467889999999999999999999999999976 589999999999999999999999 7777788999999
Q ss_pred hhhHHHHHHHHHHH
Q 011595 110 GLPTLGLSISIAIF 123 (482)
Q Consensus 110 ~i~~i~~~l~~i~~ 123 (482)
++.++..++.++..
T Consensus 200 ~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 200 GLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99766555554433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-12 Score=127.85 Aligned_cols=84 Identities=18% Similarity=0.108 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+...+.+.|++.|+|+|.. ++..+..++++|++ ||+++.++...+.++|.++++++++++.+++|||..|++.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 6788999999999999964 55566668999864 6899999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 011595 113 TLGLSISIAIF 123 (482)
Q Consensus 113 ~i~~~l~~i~~ 123 (482)
++..++..++.
T Consensus 151 ~~l~~~~~~~~ 161 (368)
T TIGR00903 151 AAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHHHH
Confidence 76555444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-12 Score=133.51 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc---cccchh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM---GWTLGY 109 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~---g~~~~F 109 (482)
+.+.+++.+++.|+++|...|...++++|++|++ ||+++++++..+.++|.++++.+..++.+.+ +|+..|
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f 194 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF 194 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence 6888899999999999999999999999999987 5899999999999999999999988776653 688889
Q ss_pred hhhHHHHHHHHH
Q 011595 110 GLPTLGLSISIA 121 (482)
Q Consensus 110 ~i~~i~~~l~~i 121 (482)
.+.++..++..+
T Consensus 195 ~~~g~~~~~~~i 206 (467)
T PRK09556 195 IFPSIIALIIGF 206 (467)
T ss_pred HHHHHHHHHHHH
Confidence 887765544433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-11 Score=124.01 Aligned_cols=263 Identities=11% Similarity=0.098 Sum_probs=155.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.+++.+...+...+++.|.+|++ +|++++++++...++|..+++.+++++.++++|+..|++.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5677888999999999999999999999999965 5899999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..+..++..++. ++++++. +..+ .+-+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~------------------------------------------~~~~~ 199 (385)
T TIGR00710 166 SLAGILLSALIFFILPET---LPYEARI-QIST------------------------------------------YFETF 199 (385)
T ss_pred HHHHHHHHHHHHHhCCCC---CCCcccC-CHHH------------------------------------------HHHHH
Confidence 876666555444333211 1111000 0000 00000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
.+....+.+..... .....+..+....+..+....+ +...+ ....+.+...+.+..+
T Consensus 200 ----------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~g~~---~~~~g~~~~~~~~~~~ 256 (385)
T TIGR00710 200 ----------------LLLLKSKMFWGYAL---IYGASFGGFFAFFSGAPFVYID-IMGVS---PSVFGLLFALNIIAMI 256 (385)
T ss_pred ----------------HHHHcCchhHHHHH---HHHHHHHHHHHHHHcChHHHHH-HcCCC---HHHHHHHHHHHHHHHH
Confidence 00000111111111 1111111111111111111100 01111 0112345566667777
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+..++.+++.+++ +..+.+.++.++.+++..++...... . ..+.+..+...++
T Consensus 257 ~~~~~~g~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~ 309 (385)
T TIGR00710 257 FGGFLNGRFIKKW-----------GAKSLLRMGLILFAVSAVLLEITAIL---------------G-LGSWAMIIGPMMF 309 (385)
T ss_pred HHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHHHHHHHHh---------------c-cchHHHHHHHHHH
Confidence 7777777775433 33444566777777666655443210 0 1122334455677
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhH-HHHHhhhh
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGV-GNFFSTFL 398 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~i-G~~lg~~l 398 (482)
.++|.....+.......+..| +.+|+++++++..... |...++.+
T Consensus 310 ~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~ 355 (385)
T TIGR00710 310 VGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV 355 (385)
T ss_pred HHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999888888777 5799999998876654 55555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=127.38 Aligned_cols=261 Identities=14% Similarity=0.116 Sum_probs=150.9
Q ss_pred HHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhhHHHHH
Q 011595 38 FAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLS 117 (482)
Q Consensus 38 ~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~i~~~ 117 (482)
++.++++|++.|+..|...+++.|++|++ +|.+++++.....++|.++||.++|++.+. .|+..|++.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 57788999999999999999999999975 689999999999999999999999999875 57777777765544
Q ss_pred HHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhhhhhcc
Q 011595 118 ISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNKAAVKT 197 (482)
Q Consensus 118 l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 197 (482)
++.+..... ++.+.++++.+ .+..+... . +.+..
T Consensus 165 ~~~~~~~~l-~~~~~~~~~~~--~~~~~~~~-~--------------------------------------~~~~~---- 198 (393)
T PRK11195 165 LAALFNLFI-PRLGARRPGQS--WNPIALLR-D--------------------------------------FFHAC---- 198 (393)
T ss_pred HHHHHHhcC-CCCcccccccC--CCHHHHHH-H--------------------------------------HHHHH----
Confidence 443332222 21111101000 00000000 0 00000
Q ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH-hHhhcccCCCCCeeeCccccchhhHHHHHHHHH
Q 011595 198 SSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVK-QGTTLDRAIGSSFKIPPASLIGFVTLSMLICVV 276 (482)
Q Consensus 198 ~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~-~~~~~~~~~~~g~~i~~~~~~~in~i~ili~~p 276 (482)
..+...+.+.. .......+|..+......++. ..+.. +.+ ....+.+....++..++..+
T Consensus 199 -----------~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l--g~s---~~~~G~~~~~~~~g~i~g~~ 259 (393)
T PRK11195 199 -----------RVLWRDKLGRF---SLAGTTLFWGAGATLRFLVLAWAPVAL--GIT---LNQPAYLQAVVAIGIAVGAG 259 (393)
T ss_pred -----------HHHHhCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC---hhHHHHHHHHHHHHHHHHHH
Confidence 00000111111 111122233333332222211 11111 111 01133445555666666666
Q ss_pred HHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHH
Q 011595 277 LYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTA 356 (482)
Q Consensus 277 l~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lg 356 (482)
+.+++ .+|+ +..+.+..|+ +.++....+.+. .++++.+...++.+++
T Consensus 260 ~~~~l----~~~~-------~~~~~~~~g~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~G~~ 306 (393)
T PRK11195 260 AAARL----VTLE-------TVLRVLPAGI-LMGLVVLLMALQ---------------------HSLLPAYPLLILIGAL 306 (393)
T ss_pred HHHHH----hcCC-------cccchHHHHH-HHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHh
Confidence 65554 2331 2233445554 333333222221 1445566777889999
Q ss_pred HHHhhhhhHHHHHhhcCchh-hHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 357 DAFLEVAKIEFFYDQAPENM-KSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 357 E~l~sp~~~~~~~~~aP~~~-~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+..++..+.+.+..|++. +|..+|+.++..++|..++..+.+.+.
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99989999999988877765 799999999999999999999988664
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=128.80 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHH-HHHhHhHhhhhhcccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGA-LFANTVLVYIQDNMGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~-~ig~~l~~~L~~~~g~~~~F~i 111 (482)
+.+.+++.+++.+++.|...|...+.+.|++|++ +|++++++++.+.++|. +++|+++..+....+||+.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 4667788889999999999999999999999875 58999999999999987 4566654444344599999999
Q ss_pred hHHHHHHHHHH
Q 011595 112 PTLGLSISIAI 122 (482)
Q Consensus 112 ~~i~~~l~~i~ 122 (482)
.++..++..++
T Consensus 193 ~~~~~~~~~~l 203 (452)
T PRK11273 193 PAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHH
Confidence 88665554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-11 Score=130.75 Aligned_cols=294 Identities=11% Similarity=0.099 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh-cccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD-NMGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~-~~g~~~~F~i 111 (482)
+.+.+.+.+++.+++.+...+...++..|++|++ ||+++.++...+.++|.++++.+++++.+ ..|||..|++
T Consensus 106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i 179 (491)
T PRK11010 106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWL 179 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 5677788888999999999999999999999965 58999999999999999999999999988 4699999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
.++..++..+..++.++.. +.+++++... +-... .+.+
T Consensus 180 ~a~l~ll~~l~~~~~~e~~-~~~~~~~~~~---~~~~~--------------------------------------~l~~ 217 (491)
T PRK11010 180 MAALLIPCIIATLLAPEPT-DTIPVPKTLE---QAVVA--------------------------------------PLRD 217 (491)
T ss_pred HHHHHHHHHHHHHhcCCCc-cccccccchh---hhHHH--------------------------------------HHHH
Confidence 8877666544433322110 0000000000 00000 0000
Q ss_pred hhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccc---cc-hhh
Q 011595 192 KAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPAS---LI-GFV 267 (482)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~---~~-~in 267 (482)
.-.++..+..+.+.+...........+...+..+. .| .+.+. +. .+.
T Consensus 218 -------------------~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~------~G----~s~~~~g~~~~~~g 268 (491)
T PRK11010 218 -------------------FFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG------VG----FDAGEVGLVNKTLG 268 (491)
T ss_pred -------------------HHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cC----CCHHHHHHHHHHHH
Confidence 00001111111111111111111111222222111 12 22322 22 233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHH
Q 011595 268 TLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLL 347 (482)
Q Consensus 268 ~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li 347 (482)
.+..++...+.+++.+++.+| +.+.++.++.+++.+.+..... . ..+.+++.
T Consensus 269 ~i~~iiG~ll~G~L~dr~g~~-----------~~l~i~~~l~~l~~l~~~~l~~----------------~-~~~~~~l~ 320 (491)
T PRK11010 269 LLATIVGALYGGILMQRLSLF-----------RALMIFGILQGVSNAGYWLLSI----------------T-DKNLYSMG 320 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHh----------------c-cccHHHHH
Confidence 345556666777776555333 2233444444443332221110 0 11233444
Q ss_pred HHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHH
Q 011595 348 PQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYY 427 (482)
Q Consensus 348 ~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 427 (482)
...++..+...+..+...+...+.+|++.+|+.+|+.+...++|..+++.+.|.+.+.. .+...
T Consensus 321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~----------------G~~~~ 384 (491)
T PRK11010 321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH----------------GWPTF 384 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ChHHH
Confidence 45566666666777778899999999999999999999999999998888888776421 13456
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 011595 428 YAFFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 428 f~~~~~l~~l~~ll~~~~~~ 447 (482)
|.+.+++++++.++...+.+
T Consensus 385 f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 385 YLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777777777666655533
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-12 Score=126.98 Aligned_cols=267 Identities=11% Similarity=0.029 Sum_probs=157.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|+|.|...+...+.+.+++|+ +|+++.+++..+.++|.++++.+.+.+.+.+|||+.|++.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 677888899999999998888888888888863 4789999999999999988777777777788999999998
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..+..++..+. ++++..+ + .... ++ ...++
T Consensus 163 ~~~~~~~~~~~~~~~~~---~~~~~~~-------------~-~~~~----------~~--------------~~~~~--- 198 (377)
T TIGR00890 163 GIIFLLVIVLGAFLIGY---PPGQLIK-------------T-NIEV----------SV--------------KDYTV--- 198 (377)
T ss_pred HHHHHHHHHHHHHheec---Cchhccc-------------c-Cccc----------ch--------------hhhhH---
Confidence 87666655443333221 1110000 0 0000 00 00000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
.+....+.+..+.. ........+......+....++.. .+ .-..+.+..+..+..+
T Consensus 199 ----------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~ 254 (377)
T TIGR00890 199 ----------------WEMLRTPQFWVLYL---SFFLNAVSGLLLIGLYKPYGQSLG--LS---DGFLVLAVSISSIFNG 254 (377)
T ss_pred ----------------HHHHcCccHHHHHH---HHHHHhHHHHHHHHHHHHHHHHcC--CC---HHHHHHHHHHHHHHHH
Confidence 00000111111111 111111111111111111111111 11 0112345667777777
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+..++.+++.|++.+| +.+.++.++.+++++.+.+.. ..+.+..+...++
T Consensus 255 ~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 304 (377)
T TIGR00890 255 GGRPFLGALSDKIGRQ-----------KTMSIVFGISAVGMAAMLFIP-------------------MLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHHHHHHHHhhh-----------hhhhHHHHHHHHHHHHHHHcc-------------------cchhHHHHHHHHH
Confidence 7788888887665433 224566667777665544321 1112223333455
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+++.....+.....+.+..|++.||+++|+.+....+|+.+++.+.+.+.+
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666555566677788899999999999999999999999999999987764
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-11 Score=126.41 Aligned_cols=260 Identities=11% Similarity=0.076 Sum_probs=140.0
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhhH
Q 011595 34 LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPT 113 (482)
Q Consensus 34 ~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~ 113 (482)
.+.+++...+.+...+...|...++..|+.++++ | +.....++...+.++|.++||++++++.+++|||..|++.+
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~ 180 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTG---R-EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA 180 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc---c-hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence 3333333333333344667888888888765432 0 12334478899999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhhh
Q 011595 114 LGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNKA 193 (482)
Q Consensus 114 i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 193 (482)
+..++..+..+...++..+++++... .. +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~----------------------------------~-- 209 (393)
T PRK15011 181 VAFIVCGVMVWLFLPSMRKELPLATG---------------TL----------------------------------E-- 209 (393)
T ss_pred HHHHHHHHHHHhhcCccCCCCccccc---------------cc----------------------------------c--
Confidence 66555544443333321110010000 00 0
Q ss_pred hhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhH-hhcccCCCCCeeeCccccchhhHHHHH
Q 011595 194 AVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQG-TTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 194 ~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~-~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
. . + ++.+..+. .+......+..+.+.....+... ++.+. + . ...+.+..+..+..+
T Consensus 210 -------~-~---~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~l~~~~~~--~--~-~~~g~~~~~~~~~~i 266 (393)
T PRK15011 210 -------A-P---R----RNRRDTLL---LFVICTLMWGTNSLYIINMPLFIINELHL--P--E-KLAGVMMGTAAGLEI 266 (393)
T ss_pred -------c-c---c----cccccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--C--H-HHHHHHHHHHHHHHH
Confidence 0 0 0 00111111 11122222333333222222111 11111 1 0 012233444445555
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+..++.+++.|++.+| +.+..+.+...+.+..+... -+.++.+...++
T Consensus 267 ~~~~~~G~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~l~~~~l 314 (393)
T PRK15011 267 PTMLIAGYFAKRLGKR-----------FLMRVAAVAGVCFYAGMLMA---------------------HSPAILLGLQLL 314 (393)
T ss_pred HHHHHHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHH---------------------hhHHHHHHHHHH
Confidence 5567777776655433 22344544444433322211 123344445555
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+++..+..+.+.....+..|++ +|.++|+++...++|+.+|+.+++.+.+
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~ 365 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAE 365 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677777777888865 9999999999899999999999998764
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.7e-12 Score=130.26 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|+|.|...+...+++.|.+|++ +|+++.+++..+.++|.++++.+.+++.+.++||+.|++.
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 5778899999999999999999999999999975 5899999999999999999999999999989999999876
Q ss_pred HHH
Q 011595 113 TLG 115 (482)
Q Consensus 113 ~i~ 115 (482)
++.
T Consensus 179 ~~~ 181 (426)
T PRK12307 179 LLP 181 (426)
T ss_pred HHH
Confidence 533
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=125.92 Aligned_cols=294 Identities=11% Similarity=0.092 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.+++.|...|...+++.|++|++ +|+++++++..+.++|..+++.+++++.++++|+..|++.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 5667888999999999999999999999999865 5899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++...+..++.+...++......++++ ....+........ .... ..+.....+ ..+ ..+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~--~~~~~~~~~-------------~~~-~~~~~~ 239 (398)
T TIGR00895 178 GIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAIAPQ-MQAE--AQSALPEQK-------------ATQ-GTKRSV 239 (398)
T ss_pred hhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHHHHHHHHHh-cccc--ccccccccc-------------ccc-chhhHH
Confidence 755444444333322211110000110 0111111000000 0000 000000000 000 000000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
+ +...+.+.......+++........+....+.++....+. ... ....+.+..+..+..+
T Consensus 240 ----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~---~~~~~~~~~~~~~~~~ 299 (398)
T TIGR00895 240 ----------F-----KALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL--GFS---LSLAATGGALFNFGGV 299 (398)
T ss_pred ----------H-----HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHHHHHHHH
Confidence 0 0000001111111111111121122211111112111111 111 0112344455555666
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+..++.+++.+ |. +.. ++..+..+.++....+.... .+.++.....++
T Consensus 300 ~~~~~~~~l~~----~~-------~~~-~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 347 (398)
T TIGR00895 300 IGSIIFGWLAD----RL-------GPR-VTALLLLLGAVFAVLVGSTL--------------------FSPTLLLLLGAI 347 (398)
T ss_pred HHHHHHHHHHh----hc-------chH-HHHHHHHHHHHHHHHHHHHh--------------------hCHHHHHHHHHH
Confidence 66666666643 32 112 33444444443333322210 123455667788
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhh
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTV 402 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~ 402 (482)
.+++.....+...+.+.+..|++.||.++|+......+|..+||.+.+.+
T Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 89999999999999999999999999999999999999999999998753
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-11 Score=124.61 Aligned_cols=262 Identities=8% Similarity=0.064 Sum_probs=153.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc--------
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG-------- 104 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g-------- 104 (482)
+.+.+....++.+++.+...|...+++.|++|++ +|+++.++...+.++|.++++.+++++..+++
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 4455555556778888889999999999999865 68999999999999999999999999988888
Q ss_pred ccchhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCC
Q 011595 105 WTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDST 184 (482)
Q Consensus 105 ~~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (482)
||..|++.++..+++.+..++..++-.++++++++ ..+-....+
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~--------------------------------- 199 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKP---LTQAVLKPI--------------------------------- 199 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCcccccchh---HHHHHHHHH---------------------------------
Confidence 99999999887666555444333321111111000 000000000
Q ss_pred ccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCcccc-
Q 011595 185 QNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASL- 263 (482)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~- 263 (482)
.++...+...++..+.+..+.+...+.+..+.++....+ .| .+++.+
T Consensus 200 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g----~~~~~~g 247 (356)
T TIGR00901 200 ------------------------REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD----MG----FSKEEIA 247 (356)
T ss_pred ------------------------HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC----CCHHHHH
Confidence 000111110112222223333344444444333332222 12 223333
Q ss_pred --chhhH-HHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 264 --IGFVT-LSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 264 --~~in~-i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
..+.. +..++..++.+++.+++ ++.+.+.++.++.+++.....+.... ....+ . + .
T Consensus 248 ~~~~~~~~~~~~~g~~~~g~l~~r~-----------g~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~-~----~-~ 306 (356)
T TIGR00901 248 LVAKINGLLGAILGGLIGGIIMQPL-----------NILYALLLFGIVQALTNAGFVWLASN----GHHDG-I----T-F 306 (356)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHhc----Ccccc-c----c-c
Confidence 33333 23334445555554333 34455677777777766554433100 00000 0 0 1
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhh
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLG 389 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~ 389 (482)
.+.++++...++.++++.+..+...++..+.+|+++||+++|+.+...+
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2345566677889999999999999999999999999999999887654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-11 Score=125.98 Aligned_cols=269 Identities=16% Similarity=0.133 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh-------hccccc
Q 011595 34 LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ-------DNMGWT 106 (482)
Q Consensus 34 ~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~-------~~~g~~ 106 (482)
...+.+..++.+++.++..+...++..+..++.+ ||+++.++.....++|.+++..+.+.+. +..+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 4555566677788888888888999998876432 5889999999999999888776665543 246899
Q ss_pred chhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCcc
Q 011595 107 LGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQN 186 (482)
Q Consensus 107 ~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (482)
..|.+.++..++..++.+...++.+++++++++. +
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~---------------------------------------------~ 208 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKERYSEIPKNIEK---------------------------------------------K 208 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc---------------------------------------------C
Confidence 9998888666555444333332211100100000 0
Q ss_pred chhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchh
Q 011595 187 LRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGF 266 (482)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~i 266 (482)
....+..+ .+...|.++.++ +.....+..+........+.. +...+ ..-..+++..+
T Consensus 209 ~~~~~~~~---------------~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~ 265 (437)
T TIGR00792 209 LSLKQIFK---------------ALFKNDQLLILC---LAYLFYNLAFNIKNGVQVYYF---TYVLG--DPELFSYMGSI 265 (437)
T ss_pred CCHHHHHH---------------HHhCCHHHHHHH---HHHHHHHHHHHHHcchhheeE---eeecC--ChHHHHHHHHH
Confidence 00000000 001112222211 122222222222111111111 00111 00112344555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHH
Q 011595 267 VTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVL 346 (482)
Q Consensus 267 n~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~l 346 (482)
..+..++..|+.+++.+++ +..+.+.+|.++.+++++.+.+.. .+.++.
T Consensus 266 ~~i~~ii~~~~~~~l~~r~-----------g~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 314 (437)
T TIGR00792 266 AIVAGLIGVLLFPRLVKKF-----------GRKILFAGGILLMVLGYLIFFFAG--------------------SNLPLI 314 (437)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHHHHcc--------------------hhHHHH
Confidence 6667777777777774433 233456778777777776654421 123445
Q ss_pred HHHHHHHhHHHHHhhhhhHHHHHhhcC-------chhhHHHHHHHHHHhhHHHHHhhhhhhhhcccc
Q 011595 347 LPQFVLMGTADAFLEVAKIEFFYDQAP-------ENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNIT 406 (482)
Q Consensus 347 i~~~~l~~lgE~l~sp~~~~~~~~~aP-------~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 406 (482)
+...++.+++.....+...+++.+.+| ++.+|.++|++++...+|+.+|+.+.+.+.+..
T Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 315 LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566778899999999999999888765 677899999999999999999999999886543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-11 Score=124.80 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh--------hccc
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ--------DNMG 104 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~--------~~~g 104 (482)
+...+.+.|+++|+|.|+..|...+++.|++|++ +|+++.++.+.+.++|.++++.++..+. ..+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 3457889999999999999999999999999976 5889999999999999999888776654 2579
Q ss_pred ccchhhhhHHHHHH
Q 011595 105 WTLGYGLPTLGLSI 118 (482)
Q Consensus 105 ~~~~F~i~~i~~~l 118 (482)
||+.|++.++..++
T Consensus 197 Wr~~F~i~~~~~ll 210 (432)
T PRK10406 197 WRIPFALGAVLAVV 210 (432)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999987654433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-11 Score=122.31 Aligned_cols=267 Identities=10% Similarity=0.078 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh--------hccccc
Q 011595 35 GIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ--------DNMGWT 106 (482)
Q Consensus 35 ~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~--------~~~g~~ 106 (482)
..+++++++.|+|.|...|...+++.|.++++ +|++..++...+.++|.++++++++.+. +.++||
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 46788899999999999999999999999876 5899999999999999999998887663 357999
Q ss_pred chhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCcc
Q 011595 107 LGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQN 186 (482)
Q Consensus 107 ~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (482)
+.|++.++..+++....... +++++..+. +++.. .+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------------~~~~~---------------------------~~~ 207 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYLRRNL----EETPVFEKA------------QEKHK---------------------------KKR 207 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCChhHHHH------------Hhccc---------------------------ccc
Confidence 99988776555443322111 111100000 00000 000
Q ss_pred chhhhhhhhccCCCCCcccccchhHHHH-HHHHHHHHHHHHHHHHHHHhhcchhhHHHhH-hhcccCCCCCeeeCccccc
Q 011595 187 LRFFNKAAVKTSSTNPWMLCSVTQVEET-KQMLAMIPILVATFVPSTMLAQINTLFVKQG-TTLDRAIGSSFKIPPASLI 264 (482)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~v~~~-k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~-~~~~~~~~~g~~i~~~~~~ 264 (482)
.++ .+...+. +.+ ..........+..+....+.++... +.... . ....+...
T Consensus 208 --------------~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~---~~~~~~~~ 261 (394)
T TIGR00883 208 --------------GPI----RETLTKHRKPF---LLGLGLVIATTTTFYLITTYLPTYLTQTLGL--S---ANSALLVL 261 (394)
T ss_pred --------------CCH----HHHHHhchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C---hhHHHHHH
Confidence 000 0000111 111 1111222222222222222222221 11111 1 01123344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchH
Q 011595 265 GFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMG-IGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTI 343 (482)
Q Consensus 265 ~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~-iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~ 343 (482)
.+..+..++..++.+++.+++.+| +.+. .+.+...+++....... . ..+.
T Consensus 262 ~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~~ 312 (394)
T TIGR00883 262 MLSLILFFITIPLSGALSDRIGRR-----------PVLIIFTVLAALLAVPLLMALL-----------------D-SGSF 312 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHHHh-----------------c-CCch
Confidence 555666677777777776554333 1122 22222222222211110 0 1133
Q ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHH-HHHHhhHHHHHhhhhhhhhccc
Q 011595 344 FVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSY-SMTTLGVGNFFSTFLLSTVSNI 405 (482)
Q Consensus 344 ~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~-~~l~~~iG~~lg~~l~~~~~~~ 405 (482)
+..+...++.+++.....+...+.+.+..|++.|++++|+ +++...+|..++|.+.+.+.+.
T Consensus 313 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~ 375 (394)
T TIGR00883 313 TLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence 4445566777888878888899999999999999999998 5666778888999999887653
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=118.68 Aligned_cols=86 Identities=10% Similarity=0.177 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+.+.+++.+++.+...+...+++.|.+|++ +|++++++.+...++|..++|.+++++.++++|++.|++.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 4567788899999999999999999999999865 5899999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHH
Q 011595 113 TLGLSISIAIFF 124 (482)
Q Consensus 113 ~i~~~l~~i~~~ 124 (482)
++..++..+...
T Consensus 152 ~~~~~~~~~~~~ 163 (377)
T PRK11102 152 ALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHH
Confidence 876666554433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-11 Score=123.37 Aligned_cols=86 Identities=6% Similarity=0.050 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.++++++++|++.+...+...+.+.|.++++ +|.++++++..+.++|..+||++++++.++.|||+.|++.
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6778899999999999877777778888998865 5788999999999999999999999999888999999998
Q ss_pred HHHHHHHHHHHH
Q 011595 113 TLGLSISIAIFF 124 (482)
Q Consensus 113 ~i~~~l~~i~~~ 124 (482)
++..+++.+..+
T Consensus 177 ~~~~~i~~~~~~ 188 (413)
T PRK15403 177 AVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHH
Confidence 877666655433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-11 Score=121.69 Aligned_cols=254 Identities=8% Similarity=0.079 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+.+++++.|++.|...|...+.+.|..+++ +|++++++++.+.++|..+|+.+++++.+...+...+. .
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-~ 165 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV-T 165 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH-H
Confidence 6778889999999999999999888888887754 58999999999999999999999999977543333332 2
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
+.... ..+..++.+. +++++++++..+..
T Consensus 166 ~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~------------------------------------------------ 194 (381)
T PRK03633 166 GLVLA-AILPLLFTRI--LNQQAENHDSTSIW------------------------------------------------ 194 (381)
T ss_pred HHHHH-HHHHHHHhcc--cCCCCCCCCCCCHH------------------------------------------------
Confidence 22111 1111221111 11100000000000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
+....+...... .........+.+..+.++...++. ... ....+.+..+..+..+
T Consensus 195 -----------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lp~~~~~~--g~s---~~~~g~~~~~~~~~~~ 249 (381)
T PRK03633 195 -----------------PMLKLRQARLGV---NGCIISGIVLGSLYGLMPLYLNHQ--GMS---DASIGFWMALLVSAGI 249 (381)
T ss_pred -----------------HHHHhcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHHHHHHHH
Confidence 000011111110 111111111222222222111111 111 0012344555666666
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+...+.+++.+++ +..+.+..+..+.+++..... . ..+.....++
T Consensus 250 ~~~~~~g~l~dr~-----------~~~~~l~~~~~~~~~~~~~~~-~-----------------------~~~~~~~~~l 294 (381)
T PRK03633 250 LGQWPIGRLADRF-----------GRLLVLRVQVFVVILGSIAML-S-----------------------QAAMAPALFI 294 (381)
T ss_pred HHHhhhHHHHHHc-----------CcHHHHHHHHHHHHHHHHHHh-h-----------------------hHHHHHHHHH
Confidence 6666666664333 333445566666666554321 1 0122345667
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.++++....|..++.+.+..|++.++.+.+.+++..++|+.+||.+.+.+.+
T Consensus 295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~ 346 (381)
T PRK03633 295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ 346 (381)
T ss_pred HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888899999999999999988888999899999999999999998764
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=122.94 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh--------hcccccc
Q 011595 36 IFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ--------DNMGWTL 107 (482)
Q Consensus 36 ~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~--------~~~g~~~ 107 (482)
.+.+.|+++|+|.|+..|...+++.|++|++ +|+++.++...+.++|.++|+.+..++. .++|||+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 5789999999999999999999999999986 5889999999988999988887665543 2689999
Q ss_pred hhhhhHHH
Q 011595 108 GYGLPTLG 115 (482)
Q Consensus 108 ~F~i~~i~ 115 (482)
.|++.++.
T Consensus 194 ~f~i~~~~ 201 (490)
T PRK10642 194 PFFIALPL 201 (490)
T ss_pred HHHHHHHH
Confidence 99986644
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-10 Score=120.19 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+...+++++++.+++.+...+...+++.|.+|++ +|.+++++.+...++|..++|.+++++.+..+|+..|++.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 4567788899999999999999999999999865 5899999999999999999999999988889999999998
Q ss_pred HHHHHHHHHHH
Q 011595 113 TLGLSISIAIF 123 (482)
Q Consensus 113 ~i~~~l~~i~~ 123 (482)
++..++..++.
T Consensus 164 ~~~~~i~~~~~ 174 (392)
T PRK10473 164 AAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHH
Confidence 86665555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-11 Score=122.79 Aligned_cols=84 Identities=7% Similarity=-0.014 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.|++.|...|...+++.|+++++ +|.++++++..+.++|..+++.+++++.+.++||+.|.+.
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 6788899999999999998898899999998765 5788999999999999999999999999989999999998
Q ss_pred HHHHHHHHHH
Q 011595 113 TLGLSISIAI 122 (482)
Q Consensus 113 ~i~~~l~~i~ 122 (482)
++..++..+.
T Consensus 164 ~~~~~~~~~~ 173 (382)
T PRK10091 164 AVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHH
Confidence 8765555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=123.61 Aligned_cols=309 Identities=14% Similarity=0.153 Sum_probs=181.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhH--hhhhhcccccchhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVL--VYIQDNMGWTLGYG 110 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~--~~L~~~~g~~~~F~ 110 (482)
+.+.+.+..++.|.-+|.-.|.....++.+|+.+ ||++..+++..+.|+|..+.|++. +++..+++||.+|+
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 7788888889999999999999999999999987 599999999999999999999999 99999999999999
Q ss_pred hhHHHHH-HHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchh
Q 011595 111 LPTLGLS-ISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRF 189 (482)
Q Consensus 111 i~~i~~~-l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (482)
++++..+ ++++.++..+. .|+..-++++.+ +++ +. .+.+..++ +.+
T Consensus 190 ~pgiiaiival~~~~~~rd-----~Pqs~GLP~ie~-----~~~---d~----~e~~~~~~------------~~~---- 236 (448)
T COG2271 190 FPGIIAIIVALILLFLLRD-----RPQSEGLPPIEE-----YRG---DP----LEIYEEEK------------ENE---- 236 (448)
T ss_pred HHHHHHHHHHHHHHHHhCC-----CccccCCCCHHH-----hhc---Cc----hhhhhhhc------------cCC----
Confidence 9996544 44444444433 233221111110 000 00 00000000 000
Q ss_pred hhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh------hcchhhHHHhHhhcccCCCCCeeeCcccc
Q 011595 190 FNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTML------AQINTLFVKQGTTLDRAIGSSFKIPPASL 263 (482)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~------~q~~s~~~~~~~~~~~~~~~g~~i~~~~~ 263 (482)
+. +..+ .-.+.+++.-.++...+.+..+| .++...|..+..+.+.. . ..+.
T Consensus 237 ------------~l---s~~~-i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~-~------a~~a 293 (448)
T COG2271 237 ------------GL---TAWQ-IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV-K------ANWA 293 (448)
T ss_pred ------------Cc---cHHH-HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH-H------HHHH
Confidence 00 0000 11222333333444444444444 34455665554444432 1 3333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchH
Q 011595 264 IGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTI 343 (482)
Q Consensus 264 ~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~ 343 (482)
..+--...+...-+.+++.|++.+.++. +.. .+-++...+++..+... + ..+
T Consensus 294 ~~lfE~agl~G~Ll~GwlSDklfkgrR~------p~~--~i~~~~i~~~~~~~w~~------------------~-~~~- 345 (448)
T COG2271 294 ISLFEVAGLPGTLLAGWLSDKLFKGRRG------PMA--LIFMLLITASLVLYWLA------------------P-NGS- 345 (448)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccccc------hHH--HHHHHHHHHHHHHHHcC------------------C-Ccc-
Confidence 4444555566666889999988765321 111 11111222222221111 0 112
Q ss_pred HHHHHHHHHHhHHHHHhhhhhH--HHHHhhcCchhhHHHHHHHHHHhhH-HHHHhhhhhhhhccccccCCccccccCCCC
Q 011595 344 FVLLPQFVLMGTADAFLEVAKI--EFFYDQAPENMKSLGTSYSMTTLGV-GNFFSTFLLSTVSNITKRHGHKGWILNNLN 420 (482)
Q Consensus 344 ~~li~~~~l~~lgE~l~sp~~~--~~~~~~aP~~~~G~~~g~~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~w~~~~~~ 420 (482)
+.+...++..+|-.+..|..+ -.+.+.+|++-.|++.|+..++.-+ |..++....+.+.+. .+|
T Consensus 346 -~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~------~gW------ 412 (448)
T COG2271 346 -YLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT------WGW------ 412 (448)
T ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec------CCC------
Confidence 223334555666666666533 2456788999999999999998887 888888888877653 245
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 421 VSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 421 ~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
...|.++.+.++++.++++.+.+.
T Consensus 413 ----~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 413 ----DGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHhh
Confidence 234555566667777776666555
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-11 Score=128.15 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.|++.++..+...+++.|.+|++ +|++++++++.+.++|.++++.+++++.++++|++.|++.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 5677889999999999999999999999999965 5899999999999999999999999999999999999875
Q ss_pred HHH
Q 011595 113 TLG 115 (482)
Q Consensus 113 ~i~ 115 (482)
++.
T Consensus 181 ~~~ 183 (496)
T PRK03893 181 ILP 183 (496)
T ss_pred HHH
Confidence 443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=119.99 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh--------hccccc
Q 011595 35 GIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ--------DNMGWT 106 (482)
Q Consensus 35 ~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~--------~~~g~~ 106 (482)
..+.+.|++.|+|.|+..|...+++.+++|++ +|++..+....+.++|.+++..+..++. +++|||
T Consensus 126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr 199 (438)
T PRK09952 126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKN------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR 199 (438)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence 35788999999999999999999999999986 5788999999999999999887777664 357999
Q ss_pred chhhhhHHHH
Q 011595 107 LGYGLPTLGL 116 (482)
Q Consensus 107 ~~F~i~~i~~ 116 (482)
..|++.++..
T Consensus 200 ~~f~~~~~~~ 209 (438)
T PRK09952 200 IPFLFSIVLV 209 (438)
T ss_pred HHHHHHHHHH
Confidence 9999877543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.9e-11 Score=121.08 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.|+|.+...+...+++.|+++++ ++.+.++......++|..++|.+++++.+++||+..|++.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 5677888899999999888888889999999865 5788899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 011595 113 TLGLSISIAIFF 124 (482)
Q Consensus 113 ~i~~~l~~i~~~ 124 (482)
++..++..+..+
T Consensus 167 ~~~~~~~~~~~~ 178 (401)
T PRK11043 167 FAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHH
Confidence 866665544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-10 Score=123.15 Aligned_cols=289 Identities=14% Similarity=0.098 Sum_probs=155.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.|++.|+..|...+++.|.+|++ +|+++.+++..+..+|.++++.++.++.+ ||+.|++.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 5677889999999999999999999999999976 58899999999999999999999877753 99999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..+..++..+..+....+++ ..+..+.+....+......+ ......+ .+.
T Consensus 250 ~i~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~---~~~~~~~--------------------~~~ 305 (505)
T TIGR00898 250 SLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLP---AEVLSLS--------------------LEK 305 (505)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCC---HHHHhhh--------------------hhh
Confidence 87666555544332211000001111 11222222222221111000 0000000 000
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSML 272 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~il 272 (482)
..........+ .+.-..+.+.+ ..+.....|............ ..+ .++ .+......+..+..+
T Consensus 306 ~~~~~~~~~~~-----~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~-~~~----~~~~~~~~~~~~~~i 369 (505)
T TIGR00898 306 DLSSSKKQYSF-----LDLFRTPNLRK---TTLCLMMLWFTTAFSYYGLVL---DLG-NLG----GNIYLDLFISGLVEL 369 (505)
T ss_pred hhhhccCCCcH-----HHHhCChHHHH---HHHHHHHHHHHHHHHHHHHhc---ccc-ccC----CChHHHHHHHHHHHH
Confidence 00000000000 00000111111 111111222221111111111 111 112 111122233344444
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
....+..++.+++.+ .+.+.+++++.+++++.+.+.. ....++.+...++
T Consensus 370 ~~~~~~~~l~dr~gr-----------r~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~~~~~~~~ 419 (505)
T TIGR00898 370 PAKLITLLLIDRLGR-----------RYTMAASLLLAGVALLLLLFVP-------------------VDLYFLRTALAVL 419 (505)
T ss_pred HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHcC-------------------CCchHHHHHHHHH
Confidence 444455555443322 3345667777777766555431 1112344445556
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhh
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLS 400 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~ 400 (482)
.+++.....+..+.+..+..|++.|+.++|+.+....+|+.++|.+.+
T Consensus 420 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 420 GKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 666666777888889999999999999999999999999999999987
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-11 Score=137.65 Aligned_cols=272 Identities=13% Similarity=0.058 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc--------cc
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN--------MG 104 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~--------~g 104 (482)
+.+.+++.+++.|++.|...|...+++.|++|++ +|+++++++..+.++|.++|+++++++.+. ++
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 4678889999999999999999999999999986 589999999999999999999999999765 22
Q ss_pred -ccchhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccC
Q 011595 105 -WTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDS 183 (482)
Q Consensus 105 -~~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (482)
|.+.+.+.++...+..+++.+..++....++..... .. .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~----~---------------------- 215 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDK--------------KK----Y---------------------- 215 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccc--------------cc----c----------------------
Confidence 333333333222222222222222111100000000 00 0
Q ss_pred CccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCcccc
Q 011595 184 TQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASL 263 (482)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~ 263 (482)
.......... ..+...+.+. ...+...+++.......+.++.... ..++..-....+++
T Consensus 216 ~~~~~~~~~~---------------~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~s~~~~~g~~ 274 (1146)
T PRK08633 216 LFPKLLWRNL---------------KLLRSDRVLW---LAIIGLSYFWFISQLAQANFPAYAK---EVLGLDNTFQVQYL 274 (1146)
T ss_pred ccHHHHHHHH---------------HHHhcCcHHH---HHHHHHHHHHHHHHHHHHhhHHHHH---HHhCCCcHHHHHHH
Confidence 0000000000 0000011111 1112222223222222222221111 11120000012345
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchH
Q 011595 264 IGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTI 343 (482)
Q Consensus 264 ~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~ 343 (482)
..+..+..++...+.+++ .+|. ...+.+.+|.++.+++++++.+. .+.
T Consensus 275 ~~~~~ig~~~g~~~~g~l----~~r~-------~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 322 (1146)
T PRK08633 275 LAASAIGIGIGSLLAGRL----SGRH-------IELGLVPLGALGLALSLFLLPTA---------------------PSL 322 (1146)
T ss_pred HHHHHHHHHHHHHHHHHH----hCCc-------eEccchhHHHHHHHHHHHHHHHh---------------------hhH
Confidence 555555555555566555 3332 22334556777777666655442 144
Q ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 344 FVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 344 ~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+++++..++.+++..+..+...+++.+.+|++.||.++|+.++...+|..+++.+++.+.
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 323 ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888999999999999999999999999999999999999999988877776554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-10 Score=116.57 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.|++.+...+...++..|.++++ +|+++++++..+..+|.+++|.+++++.++.||+..|++.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 5677888999999999988888888889988764 5788999999999999999999999999889999999988
Q ss_pred HHHHHHHHH
Q 011595 113 TLGLSISIA 121 (482)
Q Consensus 113 ~i~~~l~~i 121 (482)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 765544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.3e-11 Score=125.02 Aligned_cols=84 Identities=10% Similarity=-0.030 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh---------cc
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD---------NM 103 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~---------~~ 103 (482)
+.+.+++.+++.|++.+...+ ....+++++|++ +|++++++.+...|+|..+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 566777889999999887644 556789999876 58999999999899999888877766532 25
Q ss_pred cccchhhhhHHHHHHHHHHH
Q 011595 104 GWTLGYGLPTLGLSISIAIF 123 (482)
Q Consensus 104 g~~~~F~i~~i~~~l~~i~~ 123 (482)
|||+.|++.++..++..+..
T Consensus 196 gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 89999999887665554433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=122.98 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHh-HhHhhhhhcccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFAN-TVLVYIQDNMGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~-~l~~~L~~~~g~~~~F~i 111 (482)
+.+.+++.+++.+++.|...|...+++.|++|++ +|+++++++..+.++|..+++ .+++.+.+..+|++.|++
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 5678889999999999999999999999999975 589999999999999999999 577778788899999998
Q ss_pred hHHHHHHHHHHHH
Q 011595 112 PTLGLSISIAIFF 124 (482)
Q Consensus 112 ~~i~~~l~~i~~~ 124 (482)
.++..++..++.+
T Consensus 156 ~~~~~~~~~~~~~ 168 (379)
T TIGR00881 156 PGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHh
Confidence 8866555444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-10 Score=118.63 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh--------hcccccc
Q 011595 36 IFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ--------DNMGWTL 107 (482)
Q Consensus 36 ~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~--------~~~g~~~ 107 (482)
.++++|++.|++.|...|+..++++|++|++ +|+++.+++....++|..+++.+++.+. +++|||+
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 5688999999999999999999999999987 5899999999999999888888887763 4689999
Q ss_pred hhhhhH
Q 011595 108 GYGLPT 113 (482)
Q Consensus 108 ~F~i~~ 113 (482)
.|++..
T Consensus 193 ~f~~~~ 198 (434)
T PRK15075 193 PFLIGC 198 (434)
T ss_pred HHHHHH
Confidence 998754
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-10 Score=117.22 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh-cccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD-NMGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~-~~g~~~~F~i 111 (482)
+.+.+++.+++.+++.|...+...+.+.+++|++ +|+++++..+...++|..++|.+.+++.. ..+||+.|++
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 5677888999999999999999999999999765 57889999999999999999999888754 5799999998
Q ss_pred hHHHHHHHHHH
Q 011595 112 PTLGLSISIAI 122 (482)
Q Consensus 112 ~~i~~~l~~i~ 122 (482)
.++..++..++
T Consensus 168 ~~~~~~~~~~~ 178 (394)
T PRK03699 168 IGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHH
Confidence 87665554443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-10 Score=117.57 Aligned_cols=75 Identities=9% Similarity=-0.030 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHH-HHHhHhHhhhhhcccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGA-LFANTVLVYIQDNMGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~-~ig~~l~~~L~~~~g~~~~F~i 111 (482)
+.+.+++.+++.|+|.+...+...+.+.+.+|++ +|+++.+++..+.++|. +++|.+++++.+++||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 4666778888999999888888888888988865 58999999999999996 6899999999888897665554
Q ss_pred hH
Q 011595 112 PT 113 (482)
Q Consensus 112 ~~ 113 (482)
..
T Consensus 178 ~~ 179 (402)
T TIGR00897 178 AL 179 (402)
T ss_pred HH
Confidence 43
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-11 Score=124.94 Aligned_cols=139 Identities=10% Similarity=0.046 Sum_probs=97.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+.+..++.+...+..++.+++.+++.+| +.+.++.++.+++++.+++.+
T Consensus 265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~~~-------------------- 313 (420)
T PRK09528 265 GYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGFAT-------------------- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHhcc--------------------
Confidence 4556667777777777888875544332 335677777777776665431
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHH-HHHHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSY-SMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
++++++...++.+++.....+...+++.+..|++.+++..+. ++....+|..+++.+.+.+.+..
T Consensus 314 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------------- 379 (420)
T PRK09528 314 -GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------------- 379 (420)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 446667778888988888888888999999999999987665 67788899999999998776422
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 011595 420 NVSHLDYYYAFFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 420 ~~~~~~~~f~~~~~l~~l~~ll~~~~~~ 447 (482)
+ +...|..++++.++..++.+...|
T Consensus 380 G---~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 380 G---FQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred C---chHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 234566666666665555544333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-10 Score=118.22 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHH
Q 011595 269 LSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLP 348 (482)
Q Consensus 269 i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~ 348 (482)
+..++..|+..++ .+| .+..+.+.+|.++.+++.+.+.+.. ..+.++.+.
T Consensus 275 ~~~~~~~~l~~~l----~~r-------~g~~~~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~ 324 (448)
T PRK09848 275 VGTVASAPLVPGM----VAR-------IGKKNTFLIGALLGTCGYLLFFWVS-------------------VWSLPVALV 324 (448)
T ss_pred HHHHHHHHHHHHH----HHH-------hCcHHHHHHHHHHHHHHHHHHHHcC-------------------chhHHHHHH
Confidence 3445555666655 344 3445667888888888876655321 124556666
Q ss_pred HHHHHhHHHHHhhhhhHHHHHhhcCch-------hhHHHHHHHHHHhhHHHHHhhhhhhhhcccc
Q 011595 349 QFVLMGTADAFLEVAKIEFFYDQAPEN-------MKSLGTSYSMTTLGVGNFFSTFLLSTVSNIT 406 (482)
Q Consensus 349 ~~~l~~lgE~l~sp~~~~~~~~~aP~~-------~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 406 (482)
..++.++|+.+..+...++..+.+|.+ ++|.++|++++...+|..+|+.+.+.+....
T Consensus 325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 778899999999999999999988754 5699999999999999999999988775444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-10 Score=118.60 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhh-hhhcccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVY-IQDNMGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~-L~~~~g~~~~F~i 111 (482)
+...+++.+++.+++.|...|...+.+.|++|++ +|++++++++.+.++|..+++.+.+. +..+.+||..|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4556678889999999999999999999999976 58999999999999999999887775 4445799999999
Q ss_pred hHHHHHHHHHHH
Q 011595 112 PTLGLSISIAIF 123 (482)
Q Consensus 112 ~~i~~~l~~i~~ 123 (482)
.++..++..+..
T Consensus 191 ~~~~~~i~~~~~ 202 (438)
T TIGR00712 191 PAICAIIVALFA 202 (438)
T ss_pred HHHHHHHHHHHH
Confidence 887766654433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-10 Score=114.99 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc-ccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN-MGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~-~g~~~~F~i 111 (482)
+.+.+++..++.++..+...|...+++.|++|++ ||.++.++..++.++|.++++.+++++.++ +|||..|++
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 4555666666778889999999999999999876 589999999999999999999999998885 599999999
Q ss_pred hHHHHHHHHHH
Q 011595 112 PTLGLSISIAI 122 (482)
Q Consensus 112 ~~i~~~l~~i~ 122 (482)
.++..++..+.
T Consensus 167 ~a~~~l~~~l~ 177 (402)
T PRK11902 167 MAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHH
Confidence 88766555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=118.05 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc--ccchhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG--WTLGYG 110 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g--~~~~F~ 110 (482)
+.+.+++.+++.|+|.+...|...+++.|++|++ +|+++++++..+.++|.++++.+++.+.+..+ |++.|+
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 5677889999999999999999999999999875 58999999999999999999999999988776 999998
Q ss_pred hhHHHHHHH
Q 011595 111 LPTLGLSIS 119 (482)
Q Consensus 111 i~~i~~~l~ 119 (482)
+.++..++.
T Consensus 173 ~~~~~~~~~ 181 (405)
T TIGR00891 173 ISILPIIFA 181 (405)
T ss_pred HHHHHHHHH
Confidence 765444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-10 Score=118.66 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh------ccccc
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD------NMGWT 106 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~------~~g~~ 106 (482)
+...+++.+++.|++.|...|...+++.+++|++ +|+++.+++..+.++|.++++++++++.+ .+|||
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 5678899999999999999999999999999975 68999999999999999999999998864 36999
Q ss_pred chhhhhHHHHHHHHHHH
Q 011595 107 LGYGLPTLGLSISIAIF 123 (482)
Q Consensus 107 ~~F~i~~i~~~l~~i~~ 123 (482)
+.|++.++..++..++.
T Consensus 169 ~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999876655444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-09 Score=120.43 Aligned_cols=85 Identities=15% Similarity=0.274 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc---------
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM--------- 103 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~--------- 103 (482)
+.+.+++++++.|+|.|+..|...+++++.+|++ +|++.++++.+...+|.++++.++.++..++
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 5778899999999999999999999999999975 6899999999999999999998877665433
Q ss_pred ----cccchhhhhHHHHHHHHHHH
Q 011595 104 ----GWTLGYGLPTLGLSISIAIF 123 (482)
Q Consensus 104 ----g~~~~F~i~~i~~~l~~i~~ 123 (482)
+||+.|++.++..++.++..
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH
Confidence 57888888776655554433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-11 Score=123.46 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc-ccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG-WTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g-~~~~F~i 111 (482)
..+.+.+.|.+.|+|++...|...++++|.||++ +|++.|++||+++++|+.+|...+.++.+.-+ ||++|.+
T Consensus 120 ~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~ 193 (493)
T KOG1330|consen 120 HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRG 193 (493)
T ss_pred HHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEe
Confidence 6788899999999999999999999999999987 69999999999999999999999999988766 9999999
Q ss_pred hHHHHHHHHHHHHhc
Q 011595 112 PTLGLSISIAIFFAG 126 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~ 126 (482)
.+++.++..++.+++
T Consensus 194 ~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 194 SAVLGVIVGLLVFLF 208 (493)
T ss_pred ehHHHHHHHHHHHhh
Confidence 998777666654333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-09 Score=112.30 Aligned_cols=334 Identities=10% Similarity=0.024 Sum_probs=186.3
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhh--hhcc--------
Q 011595 34 LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYI--QDNM-------- 103 (482)
Q Consensus 34 ~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L--~~~~-------- 103 (482)
.+.+.+++.+..++.+...+...++++|.+|++++ +++.+++++....|+|.++|+.+++++ .+.+
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 35566777777788888889999999999998642 346899999999999999999999875 2211
Q ss_pred -----cccchhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhcc
Q 011595 104 -----GWTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWK 178 (482)
Q Consensus 104 -----g~~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (482)
+++..|++.++.++++.++..+..|+.+..++++.+.. + .. ..++
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-------------~--~~-------~~~~-------- 239 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-------------E--AA-------PPSK-------- 239 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-------------h--cc-------cccc--------
Confidence 66889999988888877766555443321111100000 0 00 0000
Q ss_pred ccccCCccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhc-ccCCC----
Q 011595 179 YMIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTL-DRAIG---- 253 (482)
Q Consensus 179 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~-~~~~~---- 253 (482)
......+.+. ++..++ --|.+.+++.+-++.-.-|..+.+..|.|.-+...- +....
T Consensus 240 ----~~~~~~~~~i----------~~~~~~----mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~ 301 (477)
T TIGR01301 240 ----HGEEAFFGEL----------FGAFKY----LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYD 301 (477)
T ss_pred ----cchhhhHHHH----------HHHHHH----CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHH
Confidence 0000000000 000000 012233344444444444444445555553322100 00000
Q ss_pred CCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhh
Q 011595 254 SSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITL-LQRMGIGLVIHIIIMVIASFTERYRLS---VAKD 329 (482)
Q Consensus 254 ~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~-~~k~~iG~~l~~i~~~~~~~~~~~~~~---~~~~ 329 (482)
.|.. -..+-..+|.+...+. ..++.++.++. +. ..-..++.++.+++++...+......+ ....
T Consensus 302 ~gvr-~G~~~l~~~s~~~~i~----s~~l~~l~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~ 369 (477)
T TIGR01301 302 DGVR-AGAFGLMLNSVVLGIT----SIGMEKLCRGW-------GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGD 369 (477)
T ss_pred HHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 0000 0123334444444433 33333344542 32 222378888999998887765421100 0000
Q ss_pred cCCccCCCcccch-HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCc--hhhHHHHHHHHHHhhHHHHHhhhhhhhhcccc
Q 011595 330 HSIVEKGQQVPLT-IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPE--NMKSLGTSYSMTTLGVGNFFSTFLLSTVSNIT 406 (482)
Q Consensus 330 ~~~~~~~~~~~is-~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~--~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 406 (482)
+..+. .+.. .+..+..+.+.|++.......=++++.+..|+ +..|.+||+.|++..+.+.+.++..+.+.+..
T Consensus 370 ~~~~~----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~ 445 (477)
T TIGR01301 370 GESLP----PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLF 445 (477)
T ss_pred ccccC----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 01110 1112 25566677889999999998889999999995 56699999999999999999998888754332
Q ss_pred ccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011595 407 KRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFY 449 (482)
Q Consensus 407 ~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~ 449 (482)
+ ++....+.+-++.+++++++-+...+|.
T Consensus 446 g--------------~~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 446 G--------------GGNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred C--------------CCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2 1123455566666677777666655553
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-10 Score=114.29 Aligned_cols=287 Identities=9% Similarity=-0.011 Sum_probs=158.8
Q ss_pred HHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhhHHHH
Q 011595 37 FFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGL 116 (482)
Q Consensus 37 ~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~i~~ 116 (482)
+.++.++.+++.+...|...++..|.-+ ++...++..+...|+|.++||.+++.+.+ ++|+..|++.++..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~ 172 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSR--------NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA 172 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhh--------hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence 3455667788888888888777655422 23457888899999999999999998865 69999999888665
Q ss_pred HHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhhhhhc
Q 011595 117 SISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNKAAVK 196 (482)
Q Consensus 117 ~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 196 (482)
++..+..+...+ + +|+++... ++.....+ +.+ .-+..
T Consensus 173 ~~~~~~~~~~~~---~-~~~~~~~~----------~~~~~~~~----------------------~~~----~~~~~--- 209 (396)
T TIGR00882 173 LILMLLLMFAKP---K-APSSATVA----------NALGANAS----------------------AFS----LKLAL--- 209 (396)
T ss_pred HHHHHHHHHhCC---C-Cchhhhhh----------cccccccC----------------------CCC----HHHHH---
Confidence 555443332221 1 11110000 00000000 000 00000
Q ss_pred cCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH-HhHhhcc-cCCCCCeeeCccccchhhHHHHHHH
Q 011595 197 TSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFV-KQGTTLD-RAIGSSFKIPPASLIGFVTLSMLIC 274 (482)
Q Consensus 197 ~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~-~~~~~~~-~~~~~g~~i~~~~~~~in~i~ili~ 274 (482)
+....|.++.++. .....+..+.+....+. +.....+ ...+ . ...+.+.++..+...+.
T Consensus 210 -------------~~l~~~~~~~~~l---~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~-~~~g~~~~~~~i~~~~~ 270 (396)
T TIGR00882 210 -------------ELFRQRKFWMFVL---YVVGVACVYDVFDQQFANFFTSFFATPQQG--T-RVFGYVTTMGELLNALI 270 (396)
T ss_pred -------------HHHcCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccccc--h-HHHHHHHHHHHHHHHHH
Confidence 0001122222222 12222222332222111 1111111 1111 0 01234455555566666
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHh
Q 011595 275 VVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMG 354 (482)
Q Consensus 275 ~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~ 354 (482)
.+..+++.++. ++.+.+.+|.++.++++...... .+++++++..++.+
T Consensus 271 ~~~~g~l~~r~-----------g~~~~l~~~~~l~~l~~~~~~~~---------------------~~~~~~~~~~~l~g 318 (396)
T TIGR00882 271 MFCAPLIINRI-----------GAKNALLIAGTIMSVRIIGSSFA---------------------TTALEVVILKMLHA 318 (396)
T ss_pred HHHHHHHHHHh-----------ccchhHHHHHHHHHHHHHHHHhc---------------------CChHHHHHHHHHHH
Confidence 66666654333 23344677777777776554432 24566777788889
Q ss_pred HHHHHhhhhhHHHHHhhcCchhhHHHHHH-HHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHH
Q 011595 355 TADAFLEVAKIEFFYDQAPENMKSLGTSY-SMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAI 433 (482)
Q Consensus 355 lgE~l~sp~~~~~~~~~aP~~~~G~~~g~-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~ 433 (482)
++.........+.+.+..|++.+++..+. ++....+|+.+++.+.+.+.+..+ +...|.+.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G----------------~~~~f~~~~~ 382 (396)
T TIGR00882 319 FEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG----------------FQGAYLVLGC 382 (396)
T ss_pred HHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc----------------cHHHHHHHHH
Confidence 88877777777788888899998887766 678899999999999988764221 2345666666
Q ss_pred HHHHHHHHH
Q 011595 434 LNVLNFVFF 442 (482)
Q Consensus 434 l~~l~~ll~ 442 (482)
+.++..++-
T Consensus 383 ~~~i~~~~~ 391 (396)
T TIGR00882 383 IVLLFTLIS 391 (396)
T ss_pred HHHHHHHHH
Confidence 665555543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=111.30 Aligned_cols=261 Identities=10% Similarity=0.086 Sum_probs=154.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc--ccchhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG--WTLGYG 110 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g--~~~~F~ 110 (482)
+.+.+++.+++.++|.|...+...+++.|.+++ +|.++++++..+.++|..+++.+++.+.++.+ ||..|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 566778889999999999899999999888863 47899999999999999999999999877653 999988
Q ss_pred hhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhh
Q 011595 111 LPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFF 190 (482)
Q Consensus 111 i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (482)
+.++..++....+. ++.++++++.++ ....
T Consensus 159 ~~~~~~~~~~~~~~---~~~~~~~~~~~~---------------~~~~-------------------------------- 188 (355)
T TIGR00896 159 WWALPALLALLAWI---PQVRRRVAANQT---------------TTRL-------------------------------- 188 (355)
T ss_pred HHHHHHHHHHHHHh---hhhccccCCCCC---------------CCCC--------------------------------
Confidence 77654443322221 111111110000 0000
Q ss_pred hhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHH
Q 011595 191 NKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLS 270 (482)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~ 270 (482)
... +...+ +..+.... .....+..+....+..+...++. ..+ ....+.+..+..+.
T Consensus 189 ----------~~~-----~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~lp~~~~~~--g~~---~~~~g~~~~~~~~~ 244 (355)
T TIGR00896 189 ----------TPV-----RIWRS-PLAWQVTV---FFGLQSGLYYSLIGWLPAILISH--GAS---AATAGSLLALMQLA 244 (355)
T ss_pred ----------CCc-----hhhcC-HhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHHHHHH
Confidence 000 00011 11111111 11122222222222222211111 111 01134556666777
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHH
Q 011595 271 MLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQF 350 (482)
Q Consensus 271 ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~ 350 (482)
.++..++.+++.++..+ ..+.+.++.++.++++..+.+.. ... .+. ..
T Consensus 245 ~i~~~~~~g~l~dr~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-~~~--~~ 292 (355)
T TIGR00896 245 QAASALLIPALARRVKD----------QRGIVAVLAVLQLVGLCGLLFAP-------------------MHG-LWA--WA 292 (355)
T ss_pred HHHHHHhHHHHHhhhcc----------chHHHHHHHHHHHHHHHHHHHhh-------------------hhH-HHH--HH
Confidence 77777777777543311 12234566677777766555432 111 111 34
Q ss_pred HHHhHHHHHhhhhhHHHHHhhcC-chhhHHHHHHHHHHhhHHHHHhhhhhhhhcccc
Q 011595 351 VLMGTADAFLEVAKIEFFYDQAP-ENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNIT 406 (482)
Q Consensus 351 ~l~~lgE~l~sp~~~~~~~~~aP-~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~ 406 (482)
++.++|+....|...+.+.+..+ ++++|..+|+.+....+|+.++|.+.+.+.+..
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999998888766555 577899999988888899999999999887543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-09 Score=113.03 Aligned_cols=119 Identities=12% Similarity=0.210 Sum_probs=80.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
.+..++.+..++..|+.+++. +| ++..+.+.++.++..++.+.+.+... . . +-
T Consensus 270 ~~~~~~~i~~ii~~~~~~~l~----~r-------~gkk~~~~~~~~~~~~~~~~~~~~~~-----------~----~-~~ 322 (473)
T PRK10429 270 YYLSYAGAANLVTLILFPRLV----KS-------LSRRILWAGASIFPVLSCGVLLLMGL-----------A----A-PH 322 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HH-------cCcHHHHHHHHHHHHHHHHHHHHHhc-----------c----C-ch
Confidence 344555666677777777663 44 23344455666665555544432100 0 0 12
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcC-------chhhHHHHHHHHHHhhHHHHHhhhhhhhhccccc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAP-------ENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITK 407 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP-------~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~ 407 (482)
+.++++...++.++++....+...++..+.+| ++..|.+.|.+.+..-+|..+|+.+.+.+.+..+
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455666788999999999999999999977 5667889999999999999999999988765443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.1e-10 Score=117.65 Aligned_cols=289 Identities=12% Similarity=0.092 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhhHH
Q 011595 35 GIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTL 114 (482)
Q Consensus 35 ~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~i 114 (482)
....+.+++.+++.+...+...++..|+.+ ++++ .+....++.|.+.++|.++|+.++|++.++++|+..|++.++
T Consensus 121 ~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~ 196 (468)
T TIGR00788 121 KVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAA 196 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 334457888999999999999999999999 4321 345678899999999999999999999999999999999887
Q ss_pred HHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhhhh
Q 011595 115 GLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNKAA 194 (482)
Q Consensus 115 ~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 194 (482)
..++..+...+.+++.....|+..... .. .... . +. ...+..+
T Consensus 197 l~ll~~~~~~~~~E~~~~~~~~~~~~~-~~-----~~~~-----------~------------------~~--~~~~~~~ 239 (468)
T TIGR00788 197 LLLLQLFVSNLSKERRAFVRPRIGTYL-EM-----NMAL-----------L------------------TL--GVLANVK 239 (468)
T ss_pred HHHHHHHHHHhcccccccccccccccc-hh-----hhhh-----------h------------------hh--hHHHHHH
Confidence 776664433333321100111100000 00 0000 0 00 0000000
Q ss_pred hccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH-HHHHhhcchhhHHHhHhhcccCCCCCeeeCc---cccchhhHHH
Q 011595 195 VKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFV-PSTMLAQINTLFVKQGTTLDRAIGSSFKIPP---ASLIGFVTLS 270 (482)
Q Consensus 195 ~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~-~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~---~~~~~in~i~ 270 (482)
.... ..+ + ....+...+. .+..++ |........+.+.... + ..| .++ +.+....++.
T Consensus 240 ~~~~--~l~-----~-~l~~~~i~~~---l~fifl~~~~~~~~~~~~f~~~~---~-~lG----~s~~~~G~~~~~~~v~ 300 (468)
T TIGR00788 240 VQIL--GLR-----G-AIQLLEIAKP---LIFIFLSYANLPGASGSVFCATT---Q-CLP----GGPSFSGMSKVVGNLG 300 (468)
T ss_pred HHHH--HHH-----H-HHhcHHHHHH---HHHHHHHHhhcCCCCceeEEEEc---c-cCC----CCcchhhhHHHHHHHH
Confidence 0000 000 0 0001111111 111111 2211111111111111 1 122 223 3334445555
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHH
Q 011595 271 MLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQF 350 (482)
Q Consensus 271 ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~ 350 (482)
.++...+.+++ .+| .+..+-+.++.++.+++.....+.. .+.+ ...++ + +.++.....
T Consensus 301 ~i~g~~~~~~~----~~~-------~~~r~~l~~~~~l~~~~~~~~~~l~-~~~~--~~~gi-------~-~~~~~~~~~ 358 (468)
T TIGR00788 301 SLCGVGGYDRF----LKT-------FPYRLLFGVTTLLYTLSSLFDLILV-KRWN--LAFGI-------S-DEVFVLGDS 358 (468)
T ss_pred HHHHHHHHHHH----Hhh-------CCHHHHHHHHHHHHHHHHhCceeee-eccc--cccCC-------C-Ceeeeeehh
Confidence 55555555544 344 4666667778877777664432110 0000 00010 1 123445566
Q ss_pred HHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccc
Q 011595 351 VLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNI 405 (482)
Q Consensus 351 ~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~ 405 (482)
++.+++..+...+.+.++.+.+|++.+|+..|+.....++|+.+|+.+++.+.+.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888899999999999999999999999999999999988887653
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-09 Score=108.16 Aligned_cols=80 Identities=9% Similarity=-0.001 Sum_probs=57.0
Q ss_pred HHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhhHHHHHHHH
Q 011595 41 LYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISI 120 (482)
Q Consensus 41 l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~i~~~l~~ 120 (482)
..+.++..+...+...++..++.+++ +++.+.+.+.++..+|.++|+.+.+++.+++||+..|++.++..++..
T Consensus 104 ~~~~~~~~a~~d~~~d~~~~~~~~~~------~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~ 177 (390)
T TIGR02718 104 LACASLASATQDIATDGMAAEHFNGR------TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASL 177 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 33444555556666666655555433 356677778888899999999999999999999999999987766655
Q ss_pred HHHHhc
Q 011595 121 AIFFAG 126 (482)
Q Consensus 121 i~~~~~ 126 (482)
+..++.
T Consensus 178 ~~~~~~ 183 (390)
T TIGR02718 178 VCVLWL 183 (390)
T ss_pred HHHHHc
Confidence 554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=113.79 Aligned_cols=150 Identities=13% Similarity=0.237 Sum_probs=101.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+...+++.+..++...+.+++.+++ +..+-+.++.++.++++.++...+ ...
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~-----------g~r~~l~~~~~~~~v~~~l~~~~~-----------------~~~ 305 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRF-----------GIKKVMLLSLVAWALRFGFFAYGD-----------------PEY 305 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHHHHcC-----------------cch
Confidence 3445566666666666666664433 334556778877777765554321 001
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHH-HHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSM-TTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~-l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
.+.+.++...++.++++.+..+....++.+..|++.||+++|+.+ ...++|+.+||.+.+.+.+..+.+++
T Consensus 306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~-------- 377 (418)
T TIGR00889 306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT-------- 377 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC--------
Confidence 123345566788999999999999999999999999999999997 57889999999999987753321000
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 420 ~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
.++...|...+++.++++++++++.|+
T Consensus 378 --~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 378 --FDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 013455667777777777776666553
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=107.64 Aligned_cols=66 Identities=9% Similarity=0.158 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcC-------chhhHHHHHHHHHHhhHHHHHhhhhhhhhccccc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAP-------ENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITK 407 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP-------~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~ 407 (482)
+.+.+++..++.++|+....+...+++.+.++ ++..|...|.+.+...+|..+|+.+.+.+.+..+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455666788999999999999999998886 4567889999999999999999999998766554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.9e-09 Score=104.65 Aligned_cols=263 Identities=13% Similarity=0.055 Sum_probs=153.6
Q ss_pred chhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc--------
Q 011595 31 TLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN-------- 102 (482)
Q Consensus 31 ~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~-------- 102 (482)
..+.+.+.++++++|.|.+...+..++++++.-+++ ++.+..++.-....+|+++||++++.+...
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~ 80 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ 80 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence 347889999999999999999999999999999876 367889999999999999999999987631
Q ss_pred --------ccccchhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhh
Q 011595 103 --------MGWTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYA 174 (482)
Q Consensus 103 --------~g~~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 174 (482)
.+|+++|++.+....+..+++.+. + .++.++++++. .
T Consensus 81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~-~-~p~~~~~~~~~--------------~------------------- 125 (310)
T TIGR01272 81 VATANAEAAKVHTPYLLLAGALAVLAIIFAFL-P-LPELQEADVAR--------------V------------------- 125 (310)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-CCCCCcccccc--------------c-------------------
Confidence 478999986665544443333322 1 11111111000 0
Q ss_pred hhccccccCCccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH-HhHhhcccCCC
Q 011595 175 QKWKYMIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFV-KQGTTLDRAIG 253 (482)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~-~~~~~~~~~~~ 253 (482)
+..+ .. +.......+.+ . +.+..+.++..-++....|. ..-.+. ...+
T Consensus 126 -------~~~~------~~-------------~~~~~~~~~~~---~-l~~~~~f~yvg~e~~~~~w~~~yl~~~-~~~g 174 (310)
T TIGR01272 126 -------SSGD------TT-------------QKTSAFQFTHL---V-LGALGIFVYVGAEVSAGSFLVNFLSDP-HALG 174 (310)
T ss_pred -------cccc------cc-------------chhhHHhhHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCC
Confidence 0000 00 00001111111 1 11122222221222222332 111111 1112
Q ss_pred CCeeeCc---cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 011595 254 SSFKIPP---ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDH 330 (482)
Q Consensus 254 ~g~~i~~---~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~ 330 (482)
+++ +.....+....++..-+.+++ .+| ++..+.+.++.++.+++.++.....
T Consensus 175 ----~s~~~a~~~~s~~~~~~~iGr~~~~~l----~~r-------~g~~~~l~~~~~l~~~~~~l~~~~~---------- 229 (310)
T TIGR01272 175 ----LPEDQAAHFTAYTWGGAMVGRFIGSAV----MPM-------ISQGRYLAFNAFLAVLLSIGAALTH---------- 229 (310)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------hCHHHHHHHHHHHHHHHHHHHHHcC----------
Confidence 222 344566666666655555555 344 3444445566666666654333211
Q ss_pred CCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 331 SIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 331 ~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
. .+......+.+++...+.|+..+...+..|++ .++..++. ....+|+.++|.+.|.+.+
T Consensus 230 ---------~---~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 230 ---------G---YVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred ---------C---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 0 12233556789999999999999999988875 56777775 4566899999998887764
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-09 Score=111.07 Aligned_cols=269 Identities=13% Similarity=0.107 Sum_probs=167.5
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc-------ccc
Q 011595 34 LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM-------GWT 106 (482)
Q Consensus 34 ~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~-------g~~ 106 (482)
...+.+..++..++...+..+..+++.|..++.+ ||.+..++.....++|.++...+.+.+.+.. +|+
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~ 177 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR 177 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence 3445677777899999999999999999988654 5889999999999999976666666554322 578
Q ss_pred chhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCcc
Q 011595 107 LGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQN 186 (482)
Q Consensus 107 ~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (482)
+.+.+.++..++..++..+..|+-+++.+++++..+
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~-------------------------------------------- 213 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKIS-------------------------------------------- 213 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeeeccccccccccccc--------------------------------------------
Confidence 777777766666655544444431011111110000
Q ss_pred chhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhh-cccCCCCCeeeCccccch
Q 011595 187 LRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTT-LDRAIGSSFKIPPASLIG 265 (482)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~-~~~~~~~g~~i~~~~~~~ 265 (482)
+.+..+ .....|.+.. +++..++.+.......+...+..+. +... + ..+.+..
T Consensus 214 --~~~~~~---------------~~~~nr~~~~---l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~-----~~~~~~~ 267 (428)
T PF13347_consen 214 --LRDSLR---------------SLFRNRPFRI---LLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G-----LISIFML 267 (428)
T ss_pred --cccchh---------------hhcccchHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h-----hhHHHHH
Confidence 000000 0011122222 2223333333333333333222211 1111 1 1234445
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHH
Q 011595 266 FVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFV 345 (482)
Q Consensus 266 in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~ 345 (482)
+..+..++..|+..++.+++. ..+-+.+|.++.+++.++..+.. ..+.++
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~g-----------k~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 317 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFG-----------KKKVYIIGLLLAALGFLLLFFLG-------------------PGSPWL 317 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-----------ceeehhhhHHHHHHHHHHHHHHH-------------------hhhHHH
Confidence 566666777777777744332 23446778888888888776652 135678
Q ss_pred HHHHHHHHhHHHHHhhhhhHHHHHhhcC-------chhhHHHHHHHHHHhhHHHHHhhhhhhhhccccc
Q 011595 346 LLPQFVLMGTADAFLEVAKIEFFYDQAP-------ENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITK 407 (482)
Q Consensus 346 li~~~~l~~lgE~l~sp~~~~~~~~~aP-------~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~ 407 (482)
.++..++.++|.....+...++..+..+ ++..|.++|++++..-+|..+++.+.+.+....+
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 8888999999999999999999888887 4667999999999999999999999987765443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-08 Score=108.70 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh-----------
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD----------- 101 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~----------- 101 (482)
+...+++++++.|+|.|+..|....++.+.+|++ +|+++.++++...++|.++++.++.++..
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3578899999999999999999999999999987 58999999999999999999988876532
Q ss_pred ------------cccccchhhhhHHHHHHHHH
Q 011595 102 ------------NMGWTLGYGLPTLGLSISIA 121 (482)
Q Consensus 102 ------------~~g~~~~F~i~~i~~~l~~i 121 (482)
+++||+.|.+.++..++..+
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 24799999877655444433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-09 Score=103.50 Aligned_cols=92 Identities=16% Similarity=0.056 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.++++++|.++|+|.+...++-.++++|.||++. ||++++++.--.+.+|.++||..||.+.+..|++++|++.
T Consensus 158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL 232 (464)
T KOG3764|consen 158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL 232 (464)
T ss_pred hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence 56789999999999999999999999999999875 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 011595 113 TLGLSISIAIFFAGTPF 129 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~ 129 (482)
++.+++..++-++..+.
T Consensus 233 ~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 233 AIVLLLDGALQLLVIEP 249 (464)
T ss_pred HHHHHHHHHHHHheeCc
Confidence 99888887765554443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-07 Score=99.66 Aligned_cols=86 Identities=10% Similarity=0.170 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc-------ccc
Q 011595 34 LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM-------GWT 106 (482)
Q Consensus 34 ~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~-------g~~ 106 (482)
...+.+.-.+..++..++.....++.++..++.+ ||.+..++.....++|.++++.+...+.+.. +|+
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 3444555556678888888889999999887643 6899999999999999988877765544332 466
Q ss_pred chhhhhHHHHHHHHHHHH
Q 011595 107 LGYGLPTLGLSISIAIFF 124 (482)
Q Consensus 107 ~~F~i~~i~~~l~~i~~~ 124 (482)
....+.++...+...+.+
T Consensus 184 ~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 184 GGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555544444443333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-07 Score=93.92 Aligned_cols=302 Identities=13% Similarity=0.169 Sum_probs=174.9
Q ss_pred CcchhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccch
Q 011595 29 ASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLG 108 (482)
Q Consensus 29 ~~~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~ 108 (482)
+.........+..+++|+|.+...+...++++|..|++ +|.++-++.|...-+|.+++..+.+.+.+.|+..-.
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL 157 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL 157 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 33345566677788899999999999999999999986 689999999999999999999999988887765332
Q ss_pred hhhhH----HHHHHHHHHHHhcCcceeecC-CCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccC
Q 011595 109 YGLPT----LGLSISIAIFFAGTPFYRHKK-PTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDS 183 (482)
Q Consensus 109 F~i~~----i~~~l~~i~~~~~~~~~~~~~-p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (482)
.-+.- +.+.+.++..+-.+++..+.. .+..+..
T Consensus 158 ~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~------------------------------------------ 195 (403)
T PF03209_consen 158 IQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRP------------------------------------------ 195 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCc------------------------------------------
Confidence 22221 222233222322222222111 0000000
Q ss_pred CccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCC-CeeeCccc
Q 011595 184 TQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGS-SFKIPPAS 262 (482)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~-g~~i~~~~ 262 (482)
.+.+...... .+ .+.++++ ..+++.+..|+ . |..-+. .++. -+.++++.
T Consensus 196 ----~f~~a~~~~~----------~~--~~a~~f~--~fl~l~t~a~~----~-------QD~iLE-Pygg~Vfgmsv~e 245 (403)
T PF03209_consen 196 ----PFREAWRQVW----------AS--PQARRFF--VFLFLGTLAFF----M-------QDVILE-PYGGEVFGMSVGE 245 (403)
T ss_pred ----cHHHHHHHHH----------hC--CChhHHH--HHHHHHHHHHH----h-------hHHHcC-CchhHHcCCCHHH
Confidence 0111100000 00 1122221 11122222222 1 221111 1110 11244544
Q ss_pred cchhh---HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 263 LIGFV---TLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 263 ~~~in---~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
-..+| ...+++...+.+++.. ++ ..+.+.-.+|.++.++++....+...
T Consensus 246 TT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~------------------ 297 (403)
T PF03209_consen 246 TTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP------------------ 297 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 33333 3444444455555532 12 23344446788877777766554321
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCC-
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNN- 418 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~- 418 (482)
.-+.+.+.+..+++|+|-.+.....++...+.++++..|.++|.|...++++..+|.++++.+.|... ++..+
T Consensus 298 ~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~------~~~~~~ 371 (403)
T PF03209_consen 298 LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR------ALFGNS 371 (403)
T ss_pred cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccCC
Confidence 11346778889999999999999999999999999999999999999999999999999998876543 22221
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHH
Q 011595 419 LNVSHLDYYYAFFAILNVLNFVFFL 443 (482)
Q Consensus 419 ~~~~~~~~~f~~~~~l~~l~~ll~~ 443 (482)
.. ..|...|.+=+.+++++.++..
T Consensus 372 ~~-~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 372 PA-LAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1133455554555555555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.7e-08 Score=100.50 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ 100 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~ 100 (482)
+...+.++++++|+|.|...+..++++.|+.+++ +|.+..+++.....+|..+|+.+++.+.
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999875433 3555688888888999999998887653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.6e-08 Score=100.76 Aligned_cols=88 Identities=14% Similarity=-0.024 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh-----hc-----
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ-----DN----- 102 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~-----~~----- 102 (482)
+.+.+++.+++.|++ |...+...+.++++||++ ||+++++++....|+|..+++++++.+. ..
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~ 199 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNG 199 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 678899999999998 668899999999999976 6899999998888999988777776543 22
Q ss_pred --------ccccchhhhhHHHHHHHHHHHHhcC
Q 011595 103 --------MGWTLGYGLPTLGLSISIAIFFAGT 127 (482)
Q Consensus 103 --------~g~~~~F~i~~i~~~l~~i~~~~~~ 127 (482)
.+|+.++++-.+..++..+.+++..
T Consensus 200 ~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~ 232 (462)
T PRK15034 200 VPQADGSVMSLANAAWIWVPLLAIATIAAWSGM 232 (462)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3355555566655555555555443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-07 Score=104.85 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc---------
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM--------- 103 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~--------- 103 (482)
....+++++++.|+|.+...|...+++.|.+|++ +|..++++++.+.++|.++|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 4567789999999999999999999999999987 5899999999999999999999999987643
Q ss_pred -------------cccchhhhhHHHHHHHHHHHHhcC
Q 011595 104 -------------GWTLGYGLPTLGLSISIAIFFAGT 127 (482)
Q Consensus 104 -------------g~~~~F~i~~i~~~l~~i~~~~~~ 127 (482)
+|+.+|++.++..++..+.+++..
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 278889988876666555444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-08 Score=99.39 Aligned_cols=78 Identities=12% Similarity=0.034 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh----------c
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD----------N 102 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~----------~ 102 (482)
+.+.+++++++.|++.+.. +...++++|++|++ +|+++.+++....++|..+++.+++.+.+ +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5677888999999997655 55788999999875 58999999999999999999888877654 3
Q ss_pred ccccchh-hhhHHHHH
Q 011595 103 MGWTLGY-GLPTLGLS 117 (482)
Q Consensus 103 ~g~~~~F-~i~~i~~~ 117 (482)
.+|++.| ++.++...
T Consensus 163 ~~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 163 LAWGWAFVIVPAGILL 178 (366)
T ss_pred ccccchhHHHHHHHHH
Confidence 4899999 44444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-07 Score=96.70 Aligned_cols=88 Identities=14% Similarity=0.187 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhh------hhcccc
Q 011595 32 LQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYI------QDNMGW 105 (482)
Q Consensus 32 ~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L------~~~~g~ 105 (482)
.+.+.+++.++++|+.++...|+..++++.+|.++ ||+.-++++|.+.++|.++|.++...+ ...+||
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 36888899999999999999999999999999987 689999999999999999999999886 335799
Q ss_pred cchhhhhHHHHHHHHHHHHh
Q 011595 106 TLGYGLPTLGLSISIAIFFA 125 (482)
Q Consensus 106 ~~~F~i~~i~~~l~~i~~~~ 125 (482)
|+.|++.+++.++..++.++
T Consensus 206 ~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred eeehhHHHHHHHHHHheEEE
Confidence 99999999766655544333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-07 Score=97.41 Aligned_cols=83 Identities=13% Similarity=-0.006 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh-----------
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD----------- 101 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~----------- 101 (482)
+.+.+.+++++.|+|.|...+..++.+.+..|++ +|++..++.....++|..+||.+++.+..
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 5778889999999999999999999999987765 46778999999999999999999987742
Q ss_pred ---------------cccccchhhhhHHHHHHHHH
Q 011595 102 ---------------NMGWTLGYGLPTLGLSISIA 121 (482)
Q Consensus 102 ---------------~~g~~~~F~i~~i~~~l~~i 121 (482)
..+||++|++.++..++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24699999888865444433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-07 Score=95.74 Aligned_cols=293 Identities=12% Similarity=0.040 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc---ccchhh
Q 011595 34 LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG---WTLGYG 110 (482)
Q Consensus 34 ~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g---~~~~F~ 110 (482)
.+.+++..+++|++.|- .....+.++.+||++ +++.+.+++- +-|+|..+..++++++....+ |+.+-.
T Consensus 105 ~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~------~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~ 176 (417)
T COG2223 105 TWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKE------KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAG 176 (417)
T ss_pred hHHHHHHHHHHhcccce-ehcccccccccCChh------hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 36777777888888665 556677889999987 5799999999 999999999999999998889 998888
Q ss_pred hhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhh
Q 011595 111 LPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFF 190 (482)
Q Consensus 111 i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (482)
+..+.++++.+.+++..+...+.++..++..+
T Consensus 177 i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~------------------------------------------------ 208 (417)
T COG2223 177 IYVVALAIAAVLAWLGMNDVPEHRASVKPQLP------------------------------------------------ 208 (417)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhccccccch------------------------------------------------
Confidence 88888888888887776643222222211100
Q ss_pred hhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHH
Q 011595 191 NKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLS 270 (482)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~ 270 (482)
+ +.+.+..++.++.+......++.-++-+...-..|. +.+++ --....+.+...-++.
T Consensus 209 ~---------------~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~------~~~fg-~~~~~Ag~~a~~f~~~ 266 (417)
T COG2223 209 A---------------QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYL------VTQFG-LSPVTAGLIAFLFPLI 266 (417)
T ss_pred h---------------HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH------HHhcC-CChhhHHHHHHHHHHH
Confidence 0 001111122333333333444333333322222221 12333 1112344677778888
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHH
Q 011595 271 MLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQF 350 (482)
Q Consensus 271 ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~ 350 (482)
..+..|+.+++.||+..++ ...+-+..++++.....+... .. ....+.++.+..+
T Consensus 267 g~l~Rp~GG~LsDR~Gg~r-----------v~~~~f~~~~~~~~~l~~~~~-------~~-------~~~~~~~~~~~~~ 321 (417)
T COG2223 267 GALARPLGGWLSDRIGGRR-----------VTLAVFVGMALAAALLSLFLT-------GF-------GHGGSFVVFVAVF 321 (417)
T ss_pred HHHHHhccchhhhhccchh-----------HHHHHHHHHHHHHHHHHcccc-------cc-------ccCcchHHHHHHH
Confidence 8888999999977665552 233344444444444433210 00 0011222222212
Q ss_pred HHHhHHHHHhhhhhHHHHHhhcCch---hhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHH
Q 011595 351 VLMGTADAFLEVAKIEFFYDQAPEN---MKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYY 427 (482)
Q Consensus 351 ~l~~lgE~l~sp~~~~~~~~~aP~~---~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 427 (482)
+.-.+....+..-++++.|.. +.|.+.|+.....++|+..=|...+...+.++ .....
T Consensus 322 ----l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg---------------~~~~~ 382 (417)
T COG2223 322 ----LALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG---------------SYTGA 382 (417)
T ss_pred ----HHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcc---------------cHHHH
Confidence 222233444445555666654 45667777777777777777777777665543 23445
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 011595 428 YAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 428 f~~~~~l~~l~~ll~~~~~~~ 448 (482)
|+++..+.+++.++.+...+|
T Consensus 383 f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 383 FMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667777778888777766555
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.5e-06 Score=87.18 Aligned_cols=268 Identities=12% Similarity=0.143 Sum_probs=151.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh-------cccc
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD-------NMGW 105 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~-------~~g~ 105 (482)
.....++.-++.+++...+.-...++.+...++. + ||.+..++..+..++|.++...+.+.+.. ..||
T Consensus 111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~--~---ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~ 185 (467)
T COG2211 111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP--Q---ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGY 185 (467)
T ss_pred chHHHHHHHHHHHHHHHheeCchhhcchhhcCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Confidence 4455566677888999999999999999998753 3 68999999999999998776666655533 2355
Q ss_pred cchhhhhHHHHHHHHHHHHhcCcc-eeecCCCCC-chhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccC
Q 011595 106 TLGYGLPTLGLSISIAIFFAGTPF-YRHKKPTGS-PFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDS 183 (482)
Q Consensus 106 ~~~F~i~~i~~~l~~i~~~~~~~~-~~~~~p~~~-~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (482)
+..=.+.++...++.++.++..|+ ..+.+|.++ ...+
T Consensus 186 ~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~----------------------------------------- 224 (467)
T COG2211 186 QGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLK----------------------------------------- 224 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccccc-----------------------------------------
Confidence 544444444434444433333222 211111111 0000
Q ss_pred CccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHh-hcccCCCCCeeeCccc
Q 011595 184 TQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGT-TLDRAIGSSFKIPPAS 262 (482)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~-~~~~~~~~g~~i~~~~ 262 (482)
+.|..+ ..-.+|.++..+. ...+++..++...+...+... .++.. +..+.+
T Consensus 225 -----~~~~~~---------------~~~~Nrp~~~~l~---~~l~~~~~~~i~~s~~~yy~~y~lg~~-----~l~~~~ 276 (467)
T COG2211 225 -----LKDSFL---------------LIFKNRPLLLLLL---MNLLLFIAFNIRGSIMVYYVTYVLGDP-----ELFAYL 276 (467)
T ss_pred -----HHHHHH---------------HHHccchHHHHHH---HHHHHHHHHHHHhhhhheeEEEEcCCh-----HHHHHH
Confidence 000000 0011233322222 333344444444444333221 11111 111222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccch
Q 011595 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLT 342 (482)
Q Consensus 263 ~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 342 (482)
.........++..++..++ .+| +...+-+.+|.++.+++.+.+.+.. .-+
T Consensus 277 ~~~~~~~~~l~~~~~~p~L----~~~-------~gkk~~~~~~~~~~~i~~~~~~f~~-------------------~~~ 326 (467)
T COG2211 277 LLLASGAGLLIGLILWPRL----VKK-------FGKKKLFLIGLLLLAVGYLLLYFTP-------------------AGS 326 (467)
T ss_pred HHHHHHHHHHHHHHhHHHH----HHH-------hchHHHHHHHHHHHHHHHHHHHhhc-------------------Ccc
Confidence 2222222222223333333 333 3456667888888888888876642 124
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHhhc-------CchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 343 IFVLLPQFVLMGTADAFLEVAKIEFFYDQA-------PENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 343 ~~~li~~~~l~~lgE~l~sp~~~~~~~~~a-------P~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.++.+...++.++|-.+..+.-.+++.+.+ -++..|..-|...+..=+|..++..+.+.+-.
T Consensus 327 ~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 327 VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred hHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666678889999999988888887765 56778899999998888888888887776653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-05 Score=84.89 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=65.3
Q ss_pred HHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhH
Q 011595 346 LLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLD 425 (482)
Q Consensus 346 li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 425 (482)
+.+.-++.|+...-..+..=++..++.|+++.+.+.|++.++.-..+.+||++.+.+.+.+++ ..
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~---------------~r 447 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS---------------QR 447 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------ch
Confidence 334446788888888899999999999999999999999999999999999999999876531 12
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 011595 426 YYYAFFAILNVLNFVFFLVV 445 (482)
Q Consensus 426 ~~f~~~~~l~~l~~ll~~~~ 445 (482)
+-+..+.++.+++.+++..+
T Consensus 448 ~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 448 YGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred hHHHHHHHHHHHHHHHHhhc
Confidence 23444555656666665443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.7e-08 Score=99.07 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=110.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+.++.+--+.-+++.|+.+.+-+++-| .+.|++|..+-.++.+..++..
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR-----------~~v~~vG~~iW~~Av~~~~fs~-------------------- 119 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNR-----------KRVIAVGIFIWTLAVFASGFSN-------------------- 119 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCc-----------ceEEeeHHHHHHHHHHHHHHHH--------------------
Confidence 456666666667778999998554433 4456889999999988877642
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~ 420 (482)
..|.+++.-.+.|+||...+|...+++.+..|+..||+++++++++..+|+.+|-+.++.+.+.+. .|
T Consensus 120 -~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W------ 187 (493)
T KOG1330|consen 120 -HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW------ 187 (493)
T ss_pred -HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce------
Confidence 334455577999999999999999999999999999999999999999999999999888875442 13
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011595 421 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 451 (482)
Q Consensus 421 ~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~ 451 (482)
.+-|...++++++++++..++.+.=+|
T Consensus 188 ----r~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 188 ----RWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred ----EEEEEeehHHHHHHHHHHHhhccCccc
Confidence 234667788888888776666554343
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-05 Score=83.51 Aligned_cols=127 Identities=13% Similarity=0.246 Sum_probs=86.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCch
Q 011595 296 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPEN 375 (482)
Q Consensus 296 ~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~ 375 (482)
++..+-+.+|.+..++=+.+.+... + +....+..+++..++.|+.-.+....+..++.+.+|++
T Consensus 270 ~g~~~ll~~a~~~~~vR~~l~a~~~--------~--------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~ 333 (400)
T PF03825_consen 270 FGIKWLLLLALVAYAVRWLLYAYFS--------D--------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE 333 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhc--------C--------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 5677778888888777777666541 0 00111222334446799999999999999999999999
Q ss_pred hhHHHHHHHHH-HhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 376 MKSLGTSYSMT-TLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 376 ~~G~~~g~~~l-~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
.|++++|++.. ..++|..+|..++|.+.+..+. +.. -....+|.+.+++.++..+++++..|+
T Consensus 334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~----~~~------~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA----RGM------FDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc----hhh------hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999877 4679999999999887753220 000 012345666666666666777666443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-05 Score=82.46 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=81.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCch
Q 011595 296 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPEN 375 (482)
Q Consensus 296 ~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~ 375 (482)
+++.+-+.++.+++++=.+.+++. .+++++++.-.+.++--.+......-++.+..|++
T Consensus 286 ig~k~~Lllag~i~~iRi~~~~~~---------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r 344 (412)
T PF01306_consen 286 IGAKNLLLLAGVIMAIRIIGSGFA---------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR 344 (412)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG
T ss_pred cChHhHHHHHHHHHHHHHHHHhhh---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence 566666666666666665555543 25567777778888888888899999999999999
Q ss_pred hhHHHHHH-HHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 376 MKSLGTSY-SMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 376 ~~G~~~g~-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
..++...+ ..+..++|..+.+.+.|.+++.-+ +...|++++++.++..++-.+..++
T Consensus 345 lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G----------------~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 345 LSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG----------------FQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC----------------cHHHHHHHHHHHHHHHHHheeeecC
Confidence 99888877 468889999999999998885332 2345777777777666665555444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-06 Score=85.67 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=102.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+...+..|+.+++.|++.+ .+-+.++.++.+++.++..+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~-----------r~~l~~~~~~~~~~~~~~~~~-------------------- 82 (352)
T PF07690_consen 34 IGLLFSAFFLGSALFSPFAGYLSDRFGR-----------RRVLIIGLLLFALGSLLLAFA-------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-H-----------HHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------eeeEeehhhhhhhHHHHhhhh--------------------
Confidence 4566777888888888999988765543 345678888888885444432
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
.+.+.++...++.|+++....+...+++.+..|++.|+.++|......++|..+|+.+++.+.+.. +
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~------ 149 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------G------ 149 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------H------
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------c------
Confidence 133467888899999999999999999999999999999999999999999999999998776311 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 011595 420 NVSHLDYYYAFFAILNVLNFVF 441 (482)
Q Consensus 420 ~~~~~~~~f~~~~~l~~l~~ll 441 (482)
....|.+.+++.++..++
T Consensus 150 ----~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 150 ----WRWAFLISAILSLIAAIL 167 (352)
T ss_dssp ----HCCHHHHHHHHHHHHHHH
T ss_pred ----cccccccccchhhhhhhh
Confidence 123456666666666654
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.54 E-value=5e-06 Score=86.70 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=89.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..++..+...+.+++.+++.|++.+| +-+.+++++.+++.+..++.+
T Consensus 46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 94 (412)
T TIGR02332 46 GLAATLFYAAYVICGIPSNIMLAIIGAR-----------RWIAGIMVLWGIASTATMFAT-------------------- 94 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 4556666677777778888886655444 346778888888887776532
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+.++++...++.|++|....|....++.+..|++.||+++|++.....+|..+++.+++.+.
T Consensus 95 -~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 95 -GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred -CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999988664
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-06 Score=85.55 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=88.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.+...+..++..++.+++.|++.+| +.+.++.++.+++.+++.+.
T Consensus 52 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 100 (406)
T PRK11551 52 MGWAFSAGILGLLPGALLGGRLADRIGRK-----------RILIVSVALFGLFSLATAQA-------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh--------------------
Confidence 34667777788888888888887655444 33566777777766555442
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.++++...++.+++.....|...+.+.+..|++.||..+|+.+....+|..+++.+...+.
T Consensus 101 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 101 -WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred -ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 245677788899999999999999999999999999999999999999999999998876554
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=87.39 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=91.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..+++.+...+..|+.+++.|++.+|+ -+.++.++.+++..++++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~-------------------- 79 (399)
T TIGR00893 31 YGYVFSAFSWGYVVGQFPGGWLLDRFGARK-----------TLAVFIVIWGVFTGLQAFA-------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCcce-----------eeHHHHHHHHHHHHHHHHH--------------------
Confidence 356777888888889999999877665542 2356777777776666543
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.++++...++.|+|.....+....++.+..|++.|+..+|++....++|..+++.+.+.+.
T Consensus 80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 155677788899999999999999999999999999999999999999999999999988665
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5e-06 Score=86.23 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=87.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..++..+..++..|+.+++.|++.+| +.+.+|.++.+++++++.+.+
T Consensus 45 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----------~~~~~~~~~~~~~~~~~~~~~------------------- 94 (395)
T PRK10054 45 IGYAMTIALTIGVVFSLGFGILADKFDKK-----------RYMLLAITAFASGFIAIPLVN------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhHHHHHHHHHHHHHHHHHHh-------------------
Confidence 45666777788888889999997665443 345677777878877666542
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+.+..+....+.+.+.....|...++..+..|++.|++.+|+.+...++|..+|+.+++.+.
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445667777877888889999999999999999999999999999999999998765
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-05 Score=85.26 Aligned_cols=316 Identities=11% Similarity=0.070 Sum_probs=159.4
Q ss_pred CCCCcchhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccc
Q 011595 26 CKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGW 105 (482)
Q Consensus 26 ~~~~~~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~ 105 (482)
|.+++ +...+..+..+.++|.|... .....++|..|.+ .|..++.+..+..-+...+++.++..+..+-+|
T Consensus 125 ~atA~--~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W 195 (599)
T PF06609_consen 125 CATAQ--NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGW 195 (599)
T ss_pred hhcCC--cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence 34444 66778899999999977665 5566789999875 355555555544444444567777666666799
Q ss_pred cchhhhhHHHHHHHHHHHHhcCcc--eeecCCCCCchh------hHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhc
Q 011595 106 TLGYGLPTLGLSISIAIFFAGTPF--YRHKKPTGSPFT------RMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKW 177 (482)
Q Consensus 106 ~~~F~i~~i~~~l~~i~~~~~~~~--~~~~~p~~~~~~------~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (482)
||.|++.++...++++..+++.+. ..+.+.++...+ |+.+.++....-... +-.... |
T Consensus 196 Rw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~Lf--------Llgl~w------g 261 (599)
T PF06609_consen 196 RWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALF--------LLGLSW------G 261 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHH--------HHHHhc------c
Confidence 999999998877776654333321 111111111111 223333222111000 000000 0
Q ss_pred cc-cccCCc--cch-hh-hhhh-------hccC----CCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011595 178 KY-MIDSTQ--NLR-FF-NKAA-------VKTS----STNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLF 241 (482)
Q Consensus 178 ~~-~~~~~~--~~~-~~-~~a~-------~~~~----~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~ 241 (482)
+. ..++.+ ... .+ .... |.++ ...|++++ .++|.+. ...+..+++-+.|......|
T Consensus 262 G~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf-----~~~r~~~---~~lvi~fi~G~~~~s~~~l~ 333 (599)
T PF06609_consen 262 GYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLF-----KDRRGFA---ALLVISFISGMNFFSVNILW 333 (599)
T ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHh-----ccchHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 00 001111 000 00 0000 0111 01233221 1222221 11123333444455555566
Q ss_pred HHhHhhcccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 011595 242 VKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTER 321 (482)
Q Consensus 242 ~~~~~~~~~~~~~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~ 321 (482)
+.+..++-.+-..++ ...++......+...+...+++.+. ++.+ ..+..+.+|.++..+++..++...
T Consensus 334 p~~~~~vf~~d~~~~-~~~~~~s~~~~fg~~~g~~i~g~l~----~~ir------~~Kw~li~~~~~~ta~~Gama~~~- 401 (599)
T PF06609_consen 334 PQQVVNVFGSDPISI-TEIGWISSPVGFGSCAGAVILGLLF----SKIR------HIKWQLIFGSVLMTAFCGAMAAVR- 401 (599)
T ss_pred HHHHhhhccCCCccc-ceeehhhhhHHHHHHHHHHHHHHHH----HHcc------chhHHHHHHHHHHHHHHHHHHHcc-
Confidence 555433221100000 0133444555555555555555553 2211 223456677777666555544321
Q ss_pred HHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhh
Q 011595 322 YRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLST 401 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~ 401 (482)
++ +.+.+| ...++.++|-.....+.+..+.-.+|.+.-|+++|+......+|+.+|..+...
T Consensus 402 -------------~~---n~~~~i--~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 402 -------------PD---NKNAAI--AFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred -------------CC---CcchHH--HHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11 112223 223456666666777777777788999999999999999999999998887754
Q ss_pred h
Q 011595 402 V 402 (482)
Q Consensus 402 ~ 402 (482)
+
T Consensus 464 I 464 (599)
T PF06609_consen 464 I 464 (599)
T ss_pred H
Confidence 4
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.4e-06 Score=87.81 Aligned_cols=92 Identities=8% Similarity=-0.040 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.....+.+++..+|.........+++.+....++. +|++.-++.|.+.++|++++..++|.+.++.+++..|.+.
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 344555677778888888888899999988776542 3688899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCc
Q 011595 113 TLGLSISIAIFFAGTP 128 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~ 128 (482)
++...+..+..++..+
T Consensus 161 ~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 161 AALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8776666554444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.2e-06 Score=85.66 Aligned_cols=110 Identities=9% Similarity=0.051 Sum_probs=87.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
....+..+...+..|+.+++.|+..+ .+-+.+|.++.+++++.+.+. -
T Consensus 50 l~~~~~~l~~~~~~~~~G~l~dr~g~-----------k~~l~~~~~~~~~~~~~~~~~---------------------~ 97 (400)
T PRK11646 50 IALGLRQFIQQGLGIFGGAIADRFGA-----------KPMIVTGMLMRAAGFATMAIA---------------------H 97 (400)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhCc-----------hHHHHHHHHHHHHHHHHHHHh---------------------c
Confidence 33444455556667788888665433 344677888888888776543 1
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+.|+++...+++++++.+..|...+.+.+..|++.||.++|+.....++|..+|+.+++.+.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999998775
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.6e-07 Score=89.36 Aligned_cols=148 Identities=15% Similarity=0.190 Sum_probs=122.4
Q ss_pred eCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCC
Q 011595 258 IPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQ 337 (482)
Q Consensus 258 i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (482)
...+++...-.++-++.-|+.+.+.+++..| .-|.+|+.++..+-++.++.+
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~-----------ipm~~Gl~vmf~sTilFafg~----------------- 157 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYK-----------IPMVAGLFVMFLSTILFAFGN----------------- 157 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccc-----------cHHHHHHHHHHHHHHHHHHcc-----------------
Confidence 4466788888888899999999887655444 337899999999999988864
Q ss_pred cccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchh-hHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCcccccc
Q 011595 338 QVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENM-KSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWIL 416 (482)
Q Consensus 338 ~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~-~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 416 (482)
+.+.++.+..++|+|-.+.+..+++++.+..|++. ||.+||...-+.++|..+||.++|++++.-+
T Consensus 158 ----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G--------- 224 (464)
T KOG3764|consen 158 ----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG--------- 224 (464)
T ss_pred ----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC---------
Confidence 44578889999999999999999999999999976 6999999999999999999999999987543
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 011595 417 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKA 453 (482)
Q Consensus 417 ~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~~ 453 (482)
...-|.+++.++++.+++-+++.+..+..+
T Consensus 225 -------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 225 -------KSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred -------CcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 123488999999999988777766655544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.4e-06 Score=83.27 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=54.0
Q ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 345 VLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 345 ~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+.....+.++.-..+.+-....+.+..|.+.||..+|......+++..+||++.|....
T Consensus 354 ~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 354 VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 456677888888888888899999999999999999999999999999999999988764
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-05 Score=77.76 Aligned_cols=66 Identities=18% Similarity=0.062 Sum_probs=53.4
Q ss_pred cchhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh
Q 011595 30 STLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD 101 (482)
Q Consensus 30 ~~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~ 101 (482)
.......+.+++++++.|.|..++..++++++..++++.. +=.++-.....+|+++||++++++..
T Consensus 100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~------~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAA------FRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHH------HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4446778899999999999999999999999999986432 23445555566999999999998866
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.4e-06 Score=83.68 Aligned_cols=111 Identities=13% Similarity=0.036 Sum_probs=88.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..+...+...+..++.+.+.| | .+.++-+.++.++.+++.+++.+.+
T Consensus 47 g~~~~~~~~~~~~~~~~~g~l~d----r-------~g~r~~~~~~~~~~~~~~~~~~~~~-------------------- 95 (390)
T PRK03545 47 GLMLTIYAWVVALMSLPLMLLTS----N-------VERRKLLIGLFVLFIASHVLSALAW-------------------- 95 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----C-------CChHHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 45555666666677777776643 4 3445667888888888887766532
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
++++++...+++++++....|...+++.+..|++.||.++|++....++|..+|+.+.+.+.
T Consensus 96 -~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 96 -NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55677778889999999999999999999999999999999999999999999999988765
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=81.30 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=91.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+..++..|+.+++.|++.+| +-+.++.++.+++.++..+.... .
T Consensus 36 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~----------------~ 88 (365)
T TIGR00900 36 LSLAALAGMLPYVVLSPIAGALADRYDRK-----------KVMIGADLIRAVLVAVLPFVALL----------------G 88 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhchh-----------HHHHHHHHHHHHHHHHHHHHHHc----------------C
Confidence 34567777888888899999987765444 33556666666666555543210 0
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
..+.++++...++.++++.+..|...+++.+..|++.|+.++|.......+|..+|+.+.+.+.+
T Consensus 89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12556777888999999999999999999999999999999999999999999999999887763
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-05 Score=82.91 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=91.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++..+..+...+..|+.+.+.|++.+| +.+.++.++.+++.++..+.+
T Consensus 49 ~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 98 (405)
T TIGR00891 49 AASLISAALISRWFGALMFGLWGDRYGRR-----------LPMVTSIVLFSAGTLACGFAP------------------- 98 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 45667778888888899999987765444 345667777777776655431
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.++++...++.|+++....+...+++.+..|++.|+.++|.......+|..+++.+.+.+.+
T Consensus 99 --~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 99 --GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred --cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999999999999999999999999999999887653
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-05 Score=85.03 Aligned_cols=340 Identities=13% Similarity=0.077 Sum_probs=182.2
Q ss_pred hhHHHHHHH-HHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhh
Q 011595 33 QLGIFFAAL-YTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l-~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i 111 (482)
+.+.+++.. ++.|+|.|+.......+++.+|++ ||+.+.++-..+--+|.++-|.+.-++.+++|||..+++
T Consensus 133 ~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-------kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~ 205 (509)
T KOG2504|consen 133 SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-------KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLI 205 (509)
T ss_pred hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-------HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHH
Confidence 456666655 568999999999999999999886 589999998898899998889999999999999999998
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
-+...+-.++.....++.....+|. ...+... .....+ ............ .+ .+......++....-+
T Consensus 206 ~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--~~~~~~-~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~ 273 (509)
T KOG2504|consen 206 FGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--SAASVE-STPKPVELRISE--RD-----SGLKKLSLSNLATLKR 273 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--cccccc-cccccccccccc--CC-----CCCCcccccchhhhhh
Confidence 8866644444444444321111111 0000000 000000 000000000000 00 0000000000000000
Q ss_pred h-hhhccCCCCCcccccchhHHHHHHHH-HHHHHHHHHHHHH-HHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhH
Q 011595 192 K-AAVKTSSTNPWMLCSVTQVEETKQML-AMIPILVATFVPS-TMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVT 268 (482)
Q Consensus 192 ~-a~~~~~~~~~~~~~~~~~v~~~k~~~-~~~~~~~~~~~~~-~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~ 268 (482)
. .+... .+.+. .....|.+.+. +.+.+++....+. +.|......++.... ..+ --+-..+.+.++-+
T Consensus 274 ~~~~~~~---~~~~~--~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~----~~g-~~~~~aa~l~Siig 343 (509)
T KOG2504|consen 274 GPDKWRN---SPLQA--FLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK----SLG-LSSNDAAFLLSIIG 343 (509)
T ss_pred CCccccc---cchhh--hhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcC-CChhhhHHHHHHHH
Confidence 0 00000 00000 00000111111 1111111111111 112221122222222 112 00011334455555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHH
Q 011595 269 LSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLP 348 (482)
Q Consensus 269 i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~ 348 (482)
+.-++..++.+.+.| +. . ++...-..+++++.+++..++.+.. +.+.++.
T Consensus 344 i~~i~gRi~~G~laD----~~-~----~~~~~~~~~~ll~~gl~~~~~p~~~---------------------~~~~l~~ 393 (509)
T KOG2504|consen 344 VSDIIGRIILGLLAD----KP-G----IRALVLFLLTLLIAGLARLFLPFAT---------------------TYVGLIV 393 (509)
T ss_pred HhhhhhhhhhhhhcC----cc-c----cchHHHHHHHHHHHHHHHHHHHHhc---------------------cHHHHHH
Confidence 566666666666632 21 0 3455556777777777775554431 3344555
Q ss_pred HHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHH
Q 011595 349 QFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYY 428 (482)
Q Consensus 349 ~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f 428 (482)
.-++.|+..............+..+.+.-..+.|+..+..+++...||-+.+.+.+.++ ++.+.|
T Consensus 394 ~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg---------------~Y~~~f 458 (509)
T KOG2504|consen 394 FSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG---------------NYDHAF 458 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC---------------Ceeeeh
Confidence 56788888888888888899999999999999999999999999999999998877553 134445
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011595 429 AFFAILNVLNFVFFLVVA 446 (482)
Q Consensus 429 ~~~~~l~~l~~ll~~~~~ 446 (482)
...+...+++++++.+..
T Consensus 459 ~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 459 YFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhcChHHHHHHHHHHHhH
Confidence 566777777776665554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-05 Score=82.47 Aligned_cols=113 Identities=15% Similarity=0.055 Sum_probs=90.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..+.+.+...+..++.+++.|+..+ .+.+.++.++.+++.+.+.+..
T Consensus 42 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~-----------r~~~~~~~~~~~~~~~~~~~~~------------------- 91 (385)
T TIGR00710 42 VQMTLTLYLLGFAAGQLLWGPLSDRYGR-----------RPVLLLGLFIFALSSLGLALSN------------------- 91 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhcCC-----------hHHHHHHHHHHHHHHHHHHHHc-------------------
Confidence 3456677777778888888888654433 3446678888888877665431
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.++++...++.++++....+...+++.+..|++.|++++|.......+|..+|+.+++.+.+
T Consensus 92 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 154 (385)
T TIGR00710 92 --NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV 154 (385)
T ss_pred --cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999999999999999999999999999999887653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-05 Score=80.74 Aligned_cols=84 Identities=7% Similarity=0.032 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhh--
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYG-- 110 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~-- 110 (482)
+...+.+.+++.|+++|... +..+.+..++|++ ||+++.+++..+.++|.++++++++++ .++||+.-+.
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Confidence 67888999999999999999 9999999999976 689999999999999999999999995 4679886554
Q ss_pred -hhHHHHHHHHHHHH
Q 011595 111 -LPTLGLSISIAIFF 124 (482)
Q Consensus 111 -i~~i~~~l~~i~~~ 124 (482)
|......+++++-+
T Consensus 186 ~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 186 IISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHHHHHHH
Confidence 44444455555433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-05 Score=84.14 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=92.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+|..+...+...+..|+.+++.|++.+| +-+.+|.++.+++.+++++.
T Consensus 43 ~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a-------------------- 91 (495)
T PRK14995 43 LLWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS-------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc--------------------
Confidence 45677777888888889999887655444 44678888888888877653
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhc-CchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQA-PENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~a-P~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
-+.++++...+++|+|.....|.....+.+.. |++.|++++|++.....+|..+||.+++.+.+
T Consensus 92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 25567788889999999999998888887764 78999999999999999999999999988764
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-05 Score=85.01 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=85.4
Q ss_pred CCCCCCCCCCCCC--CCcchhhH-HHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHH
Q 011595 15 PPACKDINSQDCK--KASTLQLG-IFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALF 91 (482)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~-~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~i 91 (482)
++.|+.- .++|. .++...++ +++++.++.|+|.-.+.|.-.+.+=|-..+++ -...++++|..--+|.++
T Consensus 216 ~~~~~~~-~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPai 288 (735)
T KOG3626|consen 216 TNLCRPS-PENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAI 288 (735)
T ss_pred ccccCCC-CCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHH
Confidence 3666666 34443 34443344 78899999999999999999998888877663 478999999999999999
Q ss_pred HhHhHhhhhhc------------------c-cccchhhhhHHHHHHHHHHHHhcCccee
Q 011595 92 ANTVLVYIQDN------------------M-GWTLGYGLPTLGLSISIAIFFAGTPFYR 131 (482)
Q Consensus 92 g~~l~~~L~~~------------------~-g~~~~F~i~~i~~~l~~i~~~~~~~~~~ 131 (482)
|.++++++.+- . -|+++|++++...++..+-++++-|.++
T Consensus 289 GfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 289 GFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 99999988542 2 4899999999988888887777766543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-05 Score=81.25 Aligned_cols=140 Identities=15% Similarity=0.181 Sum_probs=111.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++....+.+..|+...+.+++ +.++.+...+.+..+|-+++++.
T Consensus 50 aG~lis~yAl~~ai~ap~l~~lt~r~-----------~Rr~lLl~~l~lFi~~n~l~alA-------------------- 98 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALLTGRL-----------ERRRLLLGLLALFIVSNLLSALA-------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc-----------chHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 56889999999999999998885443 33444566777777787777764
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
-+++.++.+-++.+++-....+...+.+.+++|+++|++++|+.+....++..+|.=++.++.+.. +|
T Consensus 99 -p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW----- 166 (394)
T COG2814 99 -PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW----- 166 (394)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH-----
Confidence 266788999999999999999999999999999999999999999999999999888887776432 23
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 011595 420 NVSHLDYYYAFFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 420 ~~~~~~~~f~~~~~l~~l~~ll~~~~~~ 447 (482)
...|+..+++.+++.+..+...+
T Consensus 167 -----R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 -----RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34577777777777776666655
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.2e-06 Score=79.28 Aligned_cols=304 Identities=10% Similarity=0.118 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccc---hh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTL---GY 109 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~---~F 109 (482)
..+.+..+|++.|+|.-......++...-+|+.+ |..-+|+++....-+|+.+...+.++|.+..+--. .-
T Consensus 135 aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGK------ELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~gh 208 (459)
T KOG4686|consen 135 AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGK------ELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGH 208 (459)
T ss_pred HHHHHHhhheeeccCchhhhhhhcceeEEEecCc------cccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchH
Confidence 6788999999999999999999999999999987 47899999999999999999999999987655211 11
Q ss_pred hhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchh
Q 011595 110 GLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRF 189 (482)
Q Consensus 110 ~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (482)
-..++.+.+....... ...-.+..++...... +.
T Consensus 209 T~LG~~l~~~~~tc~~----------------slical~lg~~D~rAe------------------------------ri 242 (459)
T KOG4686|consen 209 TLLGLWLCFEVKTCKQ----------------SLICALSLGLSDDRAE------------------------------RI 242 (459)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHhhhhhhHHH------------------------------HH
Confidence 1111111111110000 0000000000000000 00
Q ss_pred hhhhhhccCCCCCcccccchhHHHHHHHH-HHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhH
Q 011595 190 FNKAAVKTSSTNPWMLCSVTQVEETKQML-AMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVT 268 (482)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~v~~~k~~~-~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~ 268 (482)
+....-..| ..| + .+|++.+- .+..+.+..+.|++....+.+ .-..-.+..+| .++..-.++|.
T Consensus 243 lh~e~g~~G-e~p----k---Ltdv~~f~ppfw~~~iicv~yyva~fPFi~---lg~~fF~~rfG----lS~~~a~~i~s 307 (459)
T KOG4686|consen 243 LHLEEGFLG-EEP----K---LTDVNTFYPPFWVLVIICVLYYVAWFPFIT---LGPMFFQKRFG----LSAVSAGNILS 307 (459)
T ss_pred HhhhcCccc-CCc----c---cccccccCccHHHHHHHHHHHHHHHHHHhh---hhHHHHHHhhC----CChhhccchhh
Confidence 000000000 000 1 12233221 122223334444443332221 11111112234 33333344444
Q ss_pred HH---HHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHH
Q 011595 269 LS---MLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFV 345 (482)
Q Consensus 269 i~---ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~ 345 (482)
.. ..+..|+.+.+.|+..++. .-+..+.++..++=..+.+.. .++
T Consensus 308 ~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~--------------------lsP-- 355 (459)
T KOG4686|consen 308 TVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF--------------------LSP-- 355 (459)
T ss_pred hhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh--------------------ccH--
Confidence 33 3445688999987765552 222334444333333333321 122
Q ss_pred HHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhH
Q 011595 346 LLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLD 425 (482)
Q Consensus 346 li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 425 (482)
..++.++|++.-+..-..+..+...+|++.-|++-|......++|-.+.+.+.+.+.+.+++ + -..+
T Consensus 356 -y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~-----y-------~~le 422 (459)
T KOG4686|consen 356 -YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS-----Y-------DNLE 422 (459)
T ss_pred -HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc-----h-------hhHH
Confidence 24678899999999888999999999999999999999999999999999999998865431 1 1245
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 011595 426 YYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 426 ~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
.+|+.++.+++....+.+.+.|+
T Consensus 423 ~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 423 AFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred HHHHHHHHHHHHHHHHHhheecc
Confidence 56777777777776666666555
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=82.10 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=88.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+++..+..+..++..++.+++.|++.+| +.+.++.++.+++.+++.+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~--------------------- 102 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLADRIGRK-----------RVLLWSILLFSVFTLLCALA--------------------- 102 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence 4556667777777788888886655443 34566777777776665542
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+.++++...++.+++.....+...+++.+..|++.|+.++|+......+|..+++.+.+.+.+
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 1445677788999999999999999999999999999999999999999999999999887653
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-05 Score=79.05 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=91.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..+++.+...+..|+.+++.|++ ++.+-+.++.++.+++.+++.+.
T Consensus 58 g~~~~~~~~~~~~~~~~~g~l~Dr~-----------grr~~~~~~~~~~~~~~~~~~~~--------------------- 105 (394)
T PRK10213 58 GQSVTVTAFVAMFASLFITQTIQAT-----------DRRYVVILFAVLLTLSCLLVSFA--------------------- 105 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-----------CcHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 3455677888888888888886543 33455678888888887766543
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+.++++...++.+++.....|...+.+.+..|++.|+.++|......++|..+|+.+++.+.+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2567788888999999999999999999999999999999999999999999999999987764
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00026 Score=76.11 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+.+.|++.|++.++...+...+++|.++++ +|..+.++ +.....|+.+++.+++++.. +||+.+++.
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~ 240 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWII 240 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 7889999999999999999999999999999987 58899999 88888999999999999977 899999988
Q ss_pred HHHHHHHHHH
Q 011595 113 TLGLSISIAI 122 (482)
Q Consensus 113 ~i~~~l~~i~ 122 (482)
.+..++.++.
T Consensus 241 ~~~~~~~~~~ 250 (521)
T KOG0255|consen 241 SIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHH
Confidence 8666655554
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-05 Score=66.93 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=83.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchH
Q 011595 264 IGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTI 343 (482)
Q Consensus 264 ~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~ 343 (482)
.....+..++..|+.+++.|+..+ .+.+.++..+.+++.+.+... .+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 51 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGR-----------KPVLLVGLFIFVLSTAMFALS---------------------SNI 51 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcch-----------hHHHHHHHHHHHHHHHHHHHh---------------------ccH
Confidence 445566777788888887554332 334566766776666655432 134
Q ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 344 FVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 344 ~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
++.....++.+++.....+.....+.+..|++.|+..+|..+....+|..+++.+.+.+.
T Consensus 52 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 52 TVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 566677889999999999999999999999999999999999999999999999988765
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=82.17 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=88.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+++.+...+...+..++.+++.|++.+| +-+.+++++.+++.++..+..
T Consensus 61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 109 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGIVSDRSNAR-----------YFMGIGLIATGIINILFGFSS-------------------- 109 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcCCc-----------hhHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4556677777788888888886655333 345778888888877665432
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.+.++...++.++++.+..+...+.+.+..|++.||+++|+++...++|..+++.+.+.+.+
T Consensus 110 -~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 110 -SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred -HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667788999999899999999999999999999999999999999999999887653
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-05 Score=83.55 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=93.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..+...+..++..|+.+++.|++.+| +.+.+|.++.+++.+++++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 87 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA-------------------- 87 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc--------------------
Confidence 45777888888888899999987655443 34677888888777766542
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+.++++...+++|+|.....|....++.+..|++.||.++|++.....+|..+|+.+++.+.+
T Consensus 88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 2456777888999999999999999999999999999999999999999999999999887653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00013 Score=73.16 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc-cccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM-GWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~-g~~~~F~i 111 (482)
+.+.++.+-++.+.|.+.......+++.+.||++ -+...+.|..+.++|+++++.++..+.++. ||+.....
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 5678888899999999999999999999999974 578999999999999999999999998887 79998877
Q ss_pred hHHHHHHHHHHHHhc
Q 011595 112 PTLGLSISIAIFFAG 126 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~ 126 (482)
=+...++++++.+-.
T Consensus 171 WAl~allAl~~WlPq 185 (395)
T COG2807 171 WALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHHhhh
Confidence 776666665554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.1e-05 Score=77.66 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=97.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+...++..+...+..|+.+++.|+..+| +-+.++.++.+++.+++.+.
T Consensus 57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 104 (408)
T PRK09874 57 GLVFSITFLFSAIASPFWGGLADRKGRK-----------IMLLRSALGMGIVMVLMGLA--------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4556777788888889999987655433 33566777777776665442
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~ 420 (482)
.+.++++...++.+++..+ .+.....+.+..|++.||.++|.......+|..+++.+.+.+.+.. +
T Consensus 105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~------- 170 (408)
T PRK09874 105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------G------- 170 (408)
T ss_pred hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------C-------
Confidence 2456677778888888765 4677788889999999999999999999999999999988765321 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhh
Q 011595 421 VSHLDYYYAFFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 421 ~~~~~~~f~~~~~l~~l~~ll~~~~~~ 447 (482)
....|.+.+++.+++.++.+...+
T Consensus 171 ---~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 171 ---LRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 133455556555555554444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-05 Score=79.64 Aligned_cols=111 Identities=12% Similarity=0.056 Sum_probs=85.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..++..+...+.+++.+.+.|++.|| +.+..|.++.+++.+.+.+.
T Consensus 54 ~~~~s~~~~~~~~~~~~~G~l~dr~Grr-----------~~l~~~~~~~~~~~~~~~~a--------------------- 101 (413)
T PRK15403 54 PASVSLYLAGGMALQWLLGPLSDRIGRR-----------PVLITGALIFTLACAATLFT--------------------- 101 (413)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence 3445556666677778888776655443 34567777777777665543
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.++++...+++|+|+.+..+.....+.+..|++.+++.++.+.....+|..+|+.+++.+.
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255677888899999999878888888888889999999999999999999999999988765
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-06 Score=86.76 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=88.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+...+..++.+++.|+..+| +.+.+|.++.+++.+++.+..
T Consensus 32 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 81 (379)
T TIGR00881 32 LGLLLSSFSIAYGISKFVMGSVSDRSNPR-----------VFLPIGLILCAIVNLFFGFST------------------- 81 (379)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhhCCe-----------ehhHHHHHHHHHHHHHHHHhh-------------------
Confidence 34566777788888888888887665444 235678888888877766532
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhh-hhhhhh
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFST-FLLSTV 402 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~-~l~~~~ 402 (482)
+.++++...++.++++....|...+++.+..|++.|+.++|++.....+|..+++ ++...+
T Consensus 82 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (379)
T TIGR00881 82 --SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI 143 (379)
T ss_pred --hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999999999999999999 454444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.4e-05 Score=78.60 Aligned_cols=112 Identities=9% Similarity=0.086 Sum_probs=91.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..+.+.+..++..|+.+++.|++ ++.+-+.++.++.+++.+++++.
T Consensus 40 ~g~~~s~~~~~~~~~~~~~g~l~dr~-----------g~r~~~~~~~~~~~~~~~l~~~~-------------------- 88 (382)
T PRK10091 40 AGHMISYYALGVVVGAPIIALFSSRY-----------SLKHILLFLVALCVIGNAMFTLS-------------------- 88 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHccC-----------ccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 45677888888899999998885543 33445678888888888776653
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.++++...++.|+++....+.....+.+..|++.|+..+|.+.....+|..+|+.+++.+.
T Consensus 89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 256777888899999999999999999999999999999999999999999999999887665
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.8e-05 Score=77.62 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=92.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..+...+...+..|+.+++.|++.+| +.+.+|.++.+++.+.+++.+
T Consensus 43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~~------------------- 92 (381)
T PRK03633 43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLMV------------------- 92 (381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 45677888888888889999987766555 345778888888877765532
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+.+.++...++.|+++....|.....+.+..|++.||+.+|.+....++|..+|+.+.+.+.
T Consensus 93 --~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 93 --GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45677788899999999999998888889999999999999999999999999999988765
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.8e-05 Score=77.73 Aligned_cols=111 Identities=13% Similarity=0.063 Sum_probs=87.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..++..+...+..|+.+++.|++.+| +-+.+|.++.+++...+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~i~~~~~~~~--------------------- 88 (392)
T PRK10473 41 HIAFSVYLAGMAAAMLFAGKIADRSGRK-----------PVAIPGAALFIIASLLCSLA--------------------- 88 (392)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3455666667777789999997765443 34567777777777665542
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.++++...++++++.....+.....+.+..|++.|+..+|.++....+|..+++.+++.+.
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 144566777889999999999999999999999999999999999999999999999887654
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.5e-05 Score=80.67 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=86.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
+..+...+...+..|+.+++.|++.+| +.+..+.++.+++.+.+.+. .
T Consensus 49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------~ 96 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGWLADRVGVR-----------NIFFTAIVLFTLGSLFCALS---------------------G 96 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHh---------------------C
Confidence 455555666677788888887665444 33456777777776655432 2
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.+.++...+++|+|.....|.....+.+..|++.|+.++|+.....++|..+|+.+.+.+.+
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~ 159 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE 159 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 455677788999999999999999999999999999999999999999999999999987764
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=75.49 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=83.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
+..+...+...+..|+.+.+.|++.+| +-+.++.++.+++.+...+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~--------------------- 99 (406)
T PRK15402 52 TSMTAYLAGGMFLQWLLGPLSDRIGRR-----------PVMLAGVAFFILTCLAILLAQ--------------------- 99 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 445666677777778888886655433 345667777777766654421
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.++++...++.+++..+..+...+.+.+..|++.|+..+++......+|..+|+.+.+.+.+
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 162 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH 162 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778899999999999999999999999999999999888888888999998876653
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00046 Score=72.87 Aligned_cols=88 Identities=7% Similarity=0.084 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhH-h-hhhhcccccchhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVL-V-YIQDNMGWTLGYG 110 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~-~-~L~~~~g~~~~F~ 110 (482)
+.-++.++|++.|+..|.......-++.+.-|++ -|+..=...-.++++|.++|..++ + .+++.-.|.+.|.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~ 188 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA 188 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH
Confidence 5678899999999999999999999999998876 589999999999999999996655 3 4556667999888
Q ss_pred hhHHHHHHHHHHHHhc
Q 011595 111 LPTLGLSISIAIFFAG 126 (482)
Q Consensus 111 i~~i~~~l~~i~~~~~ 126 (482)
...+..++.++...+.
T Consensus 189 ~~~i~~~~~l~~l~~~ 204 (485)
T KOG0569|consen 189 FPLIPALLQLALLPFL 204 (485)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8876666665554433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.5e-06 Score=86.37 Aligned_cols=117 Identities=9% Similarity=-0.051 Sum_probs=87.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.+...+...+.+|+.+++.|++.+| +.+.+++++.+++.+..+..-. ..
T Consensus 66 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~----------------~~ 118 (467)
T PRK09556 66 LGMIGLGFSITYGVGKTLVGYYADGKNTK-----------QFLPFLLILSAICMLGFGASLG----------------SG 118 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhccCcc-----------chHHHHHHHHHHHHHHHHHHHh----------------cc
Confidence 34556666777778888888886655443 3456666666666555443210 00
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+.+.++...++.|++|....|.....+.+..|+++||+++|++....++|..+++.+.....
T Consensus 119 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 119 SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 1255677778899999999999999999999999999999999999999999999988875443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.8e-05 Score=78.21 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=88.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..++..+...+..|+.+++.|++.+| +.+.++.++.+++.++..+.. .
T Consensus 73 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~------------------~ 123 (481)
T TIGR00879 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAA------------------F 123 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhc------------------c
Confidence 34667777788888888888887655444 345677777777776664431 0
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhh
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLL 399 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~ 399 (482)
..+.++++...++.++|+....+....++.+..|++.|+.++++++....+|..+++.+.
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 123456777889999999999999999999999999999999999999999999999998
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00013 Score=75.19 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=85.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++...+..+..++..|+.+.+.|++.+| +-+.++.++.+++.+.+.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~--------------------- 93 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGPLSDRVGRR-----------PVILVGMSIFILGTLVALFA--------------------- 93 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4556677777778888888887655433 34566777777776655432
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.++++...++.+++.....+...++..+..|++.++.+++.+.....+|..+|+.+.+.+.
T Consensus 94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 144567777889999998888888889989999999999999999999999999999988765
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.5e-05 Score=76.13 Aligned_cols=120 Identities=8% Similarity=-0.002 Sum_probs=87.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+...+...+...+.+|+.+++.|++.+| +.+.+|.+..+++.+........ . . ..
T Consensus 53 ~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----~-~-------~~ 108 (392)
T PRK12382 53 VGIAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAIL-----P-V-------SA 108 (392)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhcc-----c-c-------ch
Confidence 45667788888889999999998766554 23455655555443322111000 0 0 00
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+.++++...+++|+|+....|...+++.+..|++.|++++|.+.....+|..+|+.+++.+.
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 109 PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1255677788899999999999999999999999999999999999999999999999988765
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00026 Score=76.05 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc-ccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN-MGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~-~g~~~~F~i 111 (482)
+...+.++|++.|+|.|+..-.+.-+++|.-|++ .|+...+.+.+++++|.+++..++....+. ++||..+.+
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 7889999999999999999988888899988875 589999999999999999996666666443 589988877
Q ss_pred hHHHHHHHHHH
Q 011595 112 PTLGLSISIAI 122 (482)
Q Consensus 112 ~~i~~~l~~i~ 122 (482)
..+..++..+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 76554444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00015 Score=73.39 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=84.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+...+..++.+++.|++.+| +.+.++.++.+++.+++.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~~~~~~~------------------- 88 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFGPR-----------YTTTLSLLLLAIPCLWAGLAV------------------- 88 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 45677788888888889999887655443 346778888888887766532
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
. +.++++...++++++.... +.....+.+..|++.|+..++++....++|..+++.+.+.+.
T Consensus 89 ~-~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 89 Q-SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred h-hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 0 4456667788899987655 557889999999999999999999877888877777766544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.3e-05 Score=81.67 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=87.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+.+.....+..++.+++.+++.|++.+| +-+.++.++.+++.++..+.. .
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~-------------------~ 128 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVFK-----------WSIGIGMFLSSVISIVIPWAA-------------------G 128 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHHHH-------------------H
Confidence 3456666677777888888886665444 234566666666655543221 1
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+.++++...+++|++|....|....++.+..|++.||.++|++.....+|..+++.+.+.+.+
T Consensus 129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~ 192 (465)
T TIGR00894 129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE 192 (465)
T ss_pred cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345677788999999999999999999999999999999999999999999999999887653
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.9e-05 Score=80.28 Aligned_cols=144 Identities=8% Similarity=0.111 Sum_probs=103.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+.+.....+...+..++.+++.|+. .++.+-+.+|.++.+++++++++..
T Consensus 50 ag~~~~~~~~~~~~~~~~~G~laDr~----------~G~~~~l~~~~~~~~~g~~~~~~~~------------------- 100 (475)
T TIGR00924 50 AFIIFGAYSALVYLLTSVGWWFGDRV----------WGTKKTMVLGGIVLMLGHFMLAMSI------------------- 100 (475)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhh----------cchHHHHHHHHHHHHHHHHHHHhcc-------------------
Confidence 34556667777777778888887662 1233457788888888887766531
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCch---hhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCcccccc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPEN---MKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWIL 416 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~---~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 416 (482)
+.+++....++.++|+.+..|...+++.++.|++ .|+.+.++++...++|..+|+.+.+.+.+.. +
T Consensus 101 --~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g--- 169 (475)
T TIGR00924 101 --YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY------G--- 169 (475)
T ss_pred --cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc------C---
Confidence 3345666778899999999999999999999875 4888999999999999999999998776311 1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 011595 417 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYV 450 (482)
Q Consensus 417 ~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~ 450 (482)
+...|.+.++.++++.++++...+.++
T Consensus 170 -------~~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 170 -------YHVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 234555556656666666665555543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=75.92 Aligned_cols=111 Identities=12% Similarity=0.072 Sum_probs=90.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..+.+.+...+.+|+.+++.|++.+| +-+..|+++.+++.+.+++.+
T Consensus 46 ~g~~~s~~~~~~~l~~~~~g~l~dr~G~r-----------~~l~~~~~l~~~~~~~~~~a~------------------- 95 (393)
T PRK09705 46 AALLTALPVVTMGGLALAGSWLHQHVSER-----------RSVAISLLLIAVGALMRELYP------------------- 95 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHCc-------------------
Confidence 45667778888888889999887655444 457889999999998887642
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+++.++...+++|+|+....+...+.+.+..| ++|+.++|.+......|..+|+.+.+.+.
T Consensus 96 --~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 96 --QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred --chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778899999999999999999888877 77999999999999899999998887665
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.9e-05 Score=75.30 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=88.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..++..+...+..++.+++.|+..+ .+.+.+|.++.+++.+.+.+.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~l~d~~g~-----------~~~~~~~~~~~~i~~~~~~~~~-------------------- 77 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGPMADSFGR-----------KPVILGGTLVFALAAVACALAQ-------------------- 77 (377)
T ss_pred HHHHHHHHHHHHHHHHhhchHHhhcCC-----------hHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 345566777777888888888654432 3446778888888877765432
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.+.++...++.+++.....+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+.+
T Consensus 78 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 140 (377)
T PRK11102 78 -TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV 140 (377)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778899999999999999999999999999999999999999999999999887653
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.5e-05 Score=74.03 Aligned_cols=113 Identities=15% Similarity=0.250 Sum_probs=92.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++...+..+..++..|+.+++.|+..+| +-+.++.++.+++.+...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~g~~~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 84 (352)
T cd06174 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRR-----------RVLLLGLLLFALGSLLLAFA-------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCCc-----------hhhHHHHHHHHHHHHHHHHh--------------------
Confidence 44667777888888889999987665443 24677888888887776553
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+.++++...++.+++..+..+....+..+..|++.|+..++.......+|..+++.+.+.+.+
T Consensus 85 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred -ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1456777788999999999999999999999999999999999999999999999999987764
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00014 Score=73.45 Aligned_cols=110 Identities=12% Similarity=0.147 Sum_probs=84.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..++..+...+..|+.+++.|++.+| +.+.+|.++.+++.+.+++.+
T Consensus 40 ~g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 89 (377)
T TIGR00890 40 VAIWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH-------------------
Confidence 45667788888888899999997766554 235678888888887766542
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhh
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTV 402 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~ 402 (482)
+.+.+....++.++|+....+.....+.+..|+ .||.+++.+....++|..+++.+.+.+
T Consensus 90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (377)
T TIGR00890 90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSV 149 (377)
T ss_pred --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHH
Confidence 445666777899999998888888888887775 699999999999999988765555543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00019 Score=74.09 Aligned_cols=111 Identities=8% Similarity=0.160 Sum_probs=86.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..+.+.+...+..++.+++.|++.+| +.+.++.++.+++.++..+.+
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~l~~~~~-------------------- 93 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWLMEIIPLK-----------RQLIFGFALMILAVAGLMFSH-------------------- 93 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 4556677777788888888887665444 345667777777776665431
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+.++++...++.++++....+.....+.+..|++.||..++..+...++|+.+++.+.+.+.
T Consensus 94 -~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 94 -SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred -hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778899999999999999999999999999999999998888899999998877654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0003 Score=73.44 Aligned_cols=115 Identities=11% Similarity=0.120 Sum_probs=91.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.+...+..++..|+.+++.+|+. ..+-+.+|+++.+++.++......
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~l~~r~G-----------~r~~~~~g~~l~~~g~~l~~~~~~------------------ 90 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAIFMKKLS-----------YKAGILLGLFLYALGAFLFWPAAE------------------ 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-----------chHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 356777888888888888888854443 345578899998888776543210
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+.++++...++.++|..+..+....++.+..|++.+++.+++.+...++|..+|+.+.+.+.
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245667778899999999999999999999999999999999999999999999999988764
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00019 Score=73.87 Aligned_cols=138 Identities=13% Similarity=0.074 Sum_probs=92.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+++.+...+...+.++..+++.||+.|| ++.++.++..+........ .
T Consensus 29 g~~~s~~~~g~~i~~~~~G~l~Dr~grr------------~~~~~~~~~~~~~~~~~~~--------------------~ 76 (368)
T TIGR00903 29 GLLAITYPAAFLALTIPSGLLLDRAFKR------------WFLFGSLATFAAAAGRLLD--------------------P 76 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccch------------HHHHHHHHHHHHHHHHHHH--------------------h
Confidence 3455556666777788888887766543 1233333333222111111 1
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~ 420 (482)
.+.++++...++.|+||.. .++....+.+..|++.||+++++......+|..+++.++..+.+. .+|
T Consensus 77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW------ 143 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL------ 143 (368)
T ss_pred ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch------
Confidence 2567888889999999986 456666778999999999999999999999999999998877532 234
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhh
Q 011595 421 VSHLDYYYAFFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 421 ~~~~~~~f~~~~~l~~l~~ll~~~~~~ 447 (482)
...|...+++.++..++.+...+
T Consensus 144 ----r~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 144 ----QLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566666666666555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=74.66 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=90.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..++..+...+.+|+.+++.|++.+| +.+.++.++.+++.+.+.+.... ++ -.
T Consensus 53 ~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-------~~------~~ 108 (399)
T PRK05122 53 AGLVISLQYLATLLSRPHAGRYADTLGPK-----------KAVVFGLCGCALSGLLYLLAGLL-------AA------WP 108 (399)
T ss_pred HHHHHHHHHHHHHHhchhhHhHHhccCCc-----------chHHHHHHHHHHHHHHHHHhhhh-------hc------cc
Confidence 45677788888889999999997766544 33566766666655544332110 00 00
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
..+.++++...+++|+|+....+....++.+..|++.||+++|++.....+|..+|+.+++.+.+
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 109 VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH 173 (399)
T ss_pred hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 12456677788999999999999999999999999999999999999999999999999887653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=77.07 Aligned_cols=146 Identities=11% Similarity=0.075 Sum_probs=98.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..++..+...+..++.+++.|++.+| +-+.+|.++.+++.+.+.+.. ..
T Consensus 63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~-----------------~~ 114 (438)
T TIGR00712 63 LGFALSAISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILSAAVMLLMGFVP-----------------WA 114 (438)
T ss_pred hHHHHHHHHHHHHHhhhccchhhhccCCc-----------eehHHHHHHHHHHHHHHhccc-----------------cc
Confidence 34566677777777788888886655433 234667777777766654321 00
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
..+.+.+....++.++++....+...+.+.+..|++.||.++|+++...++|+.+++.+.+...... .+|
T Consensus 115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w----- 184 (438)
T TIGR00712 115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-----NDW----- 184 (438)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-----hhh-----
Confidence 1234455666788999999999989999999999999999999999999999999888766433110 122
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 420 ~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
...|.+.++++++..++.++..++
T Consensus 185 -----~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 185 -----HAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhccC
Confidence 344556666666655554444443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00017 Score=73.34 Aligned_cols=140 Identities=11% Similarity=0.010 Sum_probs=88.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRM-GIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~-~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
++..+...+..++..|+.+++.|+..+| +.+ ..+.++.+++.+++.+.
T Consensus 36 g~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 84 (375)
T TIGR00899 36 GLFYTGSAIVGIAVSQLLATRSDYQGDR-----------KGLILFCCLLAALACLLFAWN-------------------- 84 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCc-----------hHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 4556667777788889888886655333 222 33455555555444432
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHH--HHHHHHHhhHHHHHhhhhhhhhccccccCCccccccC
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLG--TSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILN 417 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~--~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 417 (482)
.+.++++...++++.++....|...+.+.+..|++.|+.. .+......++|..+|+.+++.+.+.. +|
T Consensus 85 -~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~------~~--- 154 (375)
T TIGR00899 85 -RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF------GF--- 154 (375)
T ss_pred -chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc------cc---
Confidence 1445555556777777777888888888888888777644 67777788899999999988765311 12
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 418 NLNVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 418 ~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
...|.+.+.+.++..++.++..++
T Consensus 155 -------~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 155 -------TVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555555555555554443343
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.4e-05 Score=75.96 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=92.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCch
Q 011595 296 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPEN 375 (482)
Q Consensus 296 ~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~ 375 (482)
.++.+-|.+|+++.++..+++++.+ |++.+..-+++.++-+..-.|+....+.+--|++
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs~---------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~ 149 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFSP---------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK 149 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhhh---------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence 4677778999999999999988742 6667777788999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhhh--hhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 376 MKSLGTSYSMTTLGVGNFFSTFLL--STVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 376 ~~G~~~g~~~l~~~iG~~lg~~l~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
.||+..++|+.+.++|+.+.+.+. +.+.. +.+| ...|.+-++++++.+++.+...|.
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~la~~~~------~~~w----------~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAF------HGGW----------RAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHHHHHHh------ccch----------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998 54442 1233 234556677777777666655444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=75.20 Aligned_cols=118 Identities=8% Similarity=-0.051 Sum_probs=88.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++......+..++..|+.+++.|++.+|+ .+.++.++.+++++.+.+.... .
T Consensus 54 ~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~-----------~l~~~~~~~~~~~~~~~~~~~~---------------~- 106 (417)
T PRK10489 54 VGLSVTLTGGAMFIGLMVGGVLADRYDRKK-----------LILLARGTCGLGFIGLALNAFL---------------P- 106 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhcCCce-----------EEEehHHHHHHHHHHHHHHHHc---------------C-
Confidence 456777788888888899999877665542 1334566666665554332100 0
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
..+.+++....++.+++..+..+...+.+.+..|++.++.+++++....++|..+|+.+++.+.+
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA 171 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 12445666777888999999999999999999999999999999999999999999999987753
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00048 Score=76.96 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=88.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+..++..++.+++.+++.|| +.+.+++++.+++.++.++.
T Consensus 204 ~g~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa-------------------- 252 (742)
T TIGR01299 204 KGMLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV-------------------- 252 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH--------------------
Confidence 34667777888888888888887666554 33566767666666655543
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.++++...++.|+|.....|....++....|++.||..++.+.....+|..+++.++..+.
T Consensus 253 -~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 253 -QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 145677788899999999999999999999999999999999999999999999988776554
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.9e-05 Score=79.56 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=102.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+...+++-..=+++-++..+ +.+| ++..+.|.+|+.+.++=++.+..++
T Consensus 408 fGv~~a~~~~gEI~~~ffs~k----lI~k-------iGHv~v~~lgLa~~~~Rf~~~S~L~------------------- 457 (618)
T KOG3762|consen 408 FGVVSALCHAGEILFYFFSFK----LIEK-------IGHVNVMYLGLACNVGRFLYYSYLQ------------------- 457 (618)
T ss_pred eeehhhhhccchHHHHHHHHH----HHHH-------hcccceeeehhhHHHHHHHHHHHhc-------------------
Confidence 344444444444444444444 4566 3455566778777777777666553
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHH-HhhHHHHHhhhhhhhhccccccCCccccccCC
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMT-TLGVGNFFSTFLLSTVSNITKRHGHKGWILNN 418 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l-~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ 418 (482)
++|..+|--+++++--.+++.+..+++...+|++++..++|+... ..++|-.+|+++++.+.+..+
T Consensus 458 --n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------- 524 (618)
T KOG3762|consen 458 --NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG----------- 524 (618)
T ss_pred --CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-----------
Confidence 445555566999999999999999999999999999999999765 667889999999988775321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 011595 419 LNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKAE 454 (482)
Q Consensus 419 ~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~~~ 454 (482)
-..+|..+++.+++..+++..+.+..+++..
T Consensus 525 -----~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~ 555 (618)
T KOG3762|consen 525 -----ARTTFRIFGIACLVTLALFISIQLLLKRRGF 555 (618)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 1346777777777777777766666665544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00049 Score=70.52 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=49.7
Q ss_pred HHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccc
Q 011595 351 VLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITK 407 (482)
Q Consensus 351 ~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~ 407 (482)
.+.+....-+....=++..+.+|++..|+..|+++++.-.++.+||.+.+.+.+.++
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 455655666777778899999999999999999999999999999999999988775
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00034 Score=72.74 Aligned_cols=112 Identities=14% Similarity=0.180 Sum_probs=90.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..++..+...+..|+.+++.|++.+ .+-+.++.++.+++.+...+.+
T Consensus 55 ~~~~~~~~~~~~~l~~~~~g~l~dr~g~-----------r~~l~~~~~~~~~~~~~~~~~~------------------- 104 (426)
T PRK12307 55 GAFLATAAFIGRPFGGALFGLLADKFGR-----------KPLMMWSIVAYSVGTGLSGLAS------------------- 104 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------hHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 3456677778888888888888665433 3446778888888877766542
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+.++++...++.|+|+....+....++.+..|++.|+.++|++....++|..+++.+.+.+.
T Consensus 105 --~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 105 --GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 45677778899999999999999999999999999999999999999999999988877654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.9e-05 Score=82.12 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=94.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------c--
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKD-------H-- 330 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~-------~-- 330 (482)
.+++.+.+-+...+..++.+++.++. +..+-+.+|.++.++|.++.++.+.....+..+ +
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~-----------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKL-----------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhccc-----------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 45667777888888888887774433 233446789999999998887765321000000 0
Q ss_pred ----C-Cc-cC------C-------Ccc--cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhh
Q 011595 331 ----S-IV-EK------G-------QQV--PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLG 389 (482)
Q Consensus 331 ----~-~~-~~------~-------~~~--~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~ 389 (482)
. .. ++ + .+. ...+..++..-+++|+|+....+.+.+++.+..|++.|+.++|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 0 00 00 0 000 11234566788999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcc
Q 011595 390 VGNFFSTFLLSTVSN 404 (482)
Q Consensus 390 iG~~lg~~l~~~~~~ 404 (482)
+|..+|+++++.+.+
T Consensus 219 iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999999987764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0006 Score=72.44 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=88.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+++.....+..++..++.+++.|++.+| +-+.++.++.+++.+.+++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 106 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGAMGDRYGRR-----------LAMVISIVLFSVGTLACGFAP-------------------- 106 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3455666677777778888886655443 345677777777777766532
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.++++...++.+++.....+....++.+..|++.|+.++|++....++|+.+++.+.+.+.+
T Consensus 107 -~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 169 (496)
T PRK03893 107 -GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP 169 (496)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777788999999999999999999999999999999999999999999999999887653
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00013 Score=77.96 Aligned_cols=112 Identities=10% Similarity=0.123 Sum_probs=89.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++.+++..+..++..++.+++.|++.|| +-+.++.++.+++.+..++.
T Consensus 129 ~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr-----------~~~~~~~~~~~i~~~~~~~~-------------------- 177 (505)
T TIGR00898 129 VDLTQSCFFVGVLLGSFVFGYLSDRFGRK-----------KVLLLSTLVTAVSGVLTAFS-------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHc--------------------
Confidence 35667788888888888998887665444 33566777777766655542
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
-++++++...++.|++.....+....++.+..|++.|+.+++++.....+|..+++.+...+.
T Consensus 178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP 240 (505)
T ss_pred -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 255677888899999999999999999999999999999999999999999999988876543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0006 Score=70.40 Aligned_cols=112 Identities=11% Similarity=0.048 Sum_probs=85.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..++..+...+..++.+++.|++.+| +.+.++.++.+++.+...+.
T Consensus 44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 91 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGPLSDRYGRK-----------PVLLAGLSLFALGSLGMLWV--------------------- 91 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcCCc-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 4556667777777888888886654333 34567777777776665542
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+.++++...++.++|.....+...+.+.+..|++.++...+..+...++|..+++.+++.+.+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 155 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN 155 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1456677778899999888888888999999999999999999888888999999999887653
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.9e-05 Score=77.93 Aligned_cols=261 Identities=13% Similarity=0.068 Sum_probs=149.5
Q ss_pred CCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhhHHHHHHHHHHHHhcCcc
Q 011595 50 GTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLPTLGLSISIAIFFAGTPF 129 (482)
Q Consensus 50 ~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~i~~~l~~i~~~~~~~~ 129 (482)
.+.....+.++|....+ +|...+++...+.-.|..++|.+++++.+.+|+...|.++++..+++.+..++..++
T Consensus 128 ~~~s~~~a~vadis~~~------~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 128 AIFSVGFAYVADISSEE------ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred hhhhhhhhheeeccchh------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 34445556677776654 589999999999999999999999999999999999999998888887765555543
Q ss_pred eeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhhhhhccCCCCCcccccch
Q 011595 130 YRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNKAAVKTSSTNPWMLCSVT 209 (482)
Q Consensus 130 ~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 209 (482)
-.. +++.+. .+ .+.... . .+.++... . .++ ...
T Consensus 202 sl~-~~~~~~-~~--------~~~~~~------~---------------------~~~~~~~~--~------~~~--~~~ 234 (463)
T KOG2816|consen 202 SLQ-EKERSD-AT--------LRELTP------G---------------------SLDSSHVA--D------AFQ--SLT 234 (463)
T ss_pred ccC-cccccc-cc--------ccccCC------C---------------------cccchhhh--h------hhh--hhc
Confidence 211 111110 00 000000 0 00000000 0 000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHhHhhcccCCCCCeee-Cccccc----hhhHHHHHHHHHHHHHHHH
Q 011595 210 QVEETKQMLAMIPILVATFVPSTMLAQIN-TLFVKQGTTLDRAIGSSFKI-PPASLI----GFVTLSMLICVVLYDRYFV 283 (482)
Q Consensus 210 ~v~~~k~~~~~~~~~~~~~~~~~~~~q~~-s~~~~~~~~~~~~~~~g~~i-~~~~~~----~in~i~ili~~pl~~~l~~ 283 (482)
...+.|..+.++. .....++.-..+.. ..+. .++..++ |.- ..+.+. ....+..+++.|++.+.
T Consensus 235 ~~~~~r~~l~l~l--~~~~~~~~~~~~~~~~~~~----yl~~~f~--w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-- 304 (463)
T KOG2816|consen 235 KVGPDRLLLLLLL--VAFLSSLPEAGGASDVLLL----YLKAKFG--WNKKEFSDLLSLVSILGIISQLLLLPLLSSI-- 304 (463)
T ss_pred ccCCCccchHHHH--HHHHHHHHHhcCceeEEEE----EEeeecC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0112222222221 12222221111111 1110 1122222 111 122232 33333333333333322
Q ss_pred HHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhh
Q 011595 284 KIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVA 363 (482)
Q Consensus 284 ~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~ 363 (482)
....+-+.+|++.-.+++.+.++.. . .|++....+....-.++.|.
T Consensus 305 ------------l~~~~~i~lGl~~~~~~~~~~af~~---------------------~-~w~~~~~~v~~~~~~~~~pa 350 (463)
T KOG2816|consen 305 ------------LGEKRLISLGLLSEFLQLLLFAFAT---------------------E-TWMMFAAGVVVALAGIVFPA 350 (463)
T ss_pred ------------HhhhhHhhHHHHHHHHHHHHHHHhc---------------------c-chhhhHHHHHHHhhcchhHH
Confidence 1222256789999999988888753 1 25555556666667789999
Q ss_pred hHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccc
Q 011595 364 KIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITK 407 (482)
Q Consensus 364 ~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~ 407 (482)
..+++.+++.++.+|..+++.....++.+.+++.+.+.+...+.
T Consensus 351 ~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 351 IRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred HHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876553
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00035 Score=77.02 Aligned_cols=251 Identities=11% Similarity=-0.039 Sum_probs=169.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc-ccc----
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG-WTL---- 107 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g-~~~---- 107 (482)
..+...+.++.++++.++.+++..++.+++.++.++ +++++.+++|+|..+.+.+ |.+++..+..... +..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccc
Confidence 356667788899999999999999999999998752 4466899999999999997 4566655544333 322
Q ss_pred ---hhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCC
Q 011595 108 ---GYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDST 184 (482)
Q Consensus 108 ---~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (482)
-++..++.+++.++.++.+...++..++.+.+...+.+++...+..... +....
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~-----------------------~~~~~ 213 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK-----------------------RFSTR 213 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH-----------------------hhccC
Confidence 3346667777777778888765555555444333344444333221100 00000
Q ss_pred ccchhhhhhhhccCCCCCccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccc
Q 011595 185 QNLRFFNKAAVKTSSTNPWML--CSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPAS 262 (482)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~--~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~ 262 (482)
+... ...|.. .....+++++...+++.++...+.+++.+.|....+..+..+.+...+ .+...+..
T Consensus 214 ------~~~~-----~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g~~ip 281 (654)
T TIGR00926 214 ------SEHW-----PLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGGFEIQ 281 (654)
T ss_pred ------Cccc-----chhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCCEecC
Confidence 0000 000100 012223456788889999999999999999998888888888877643 33334456
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011595 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLS 325 (482)
Q Consensus 263 ~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~ 325 (482)
.+.++.+-.+++.++...+.+++.+++.++ -.+++++.-+.+.+.++.+.+++.+.....
T Consensus 282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~ 341 (654)
T TIGR00926 282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLK 341 (654)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888999997543 457888888888888888887777655444
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00053 Score=72.33 Aligned_cols=111 Identities=11% Similarity=0.028 Sum_probs=80.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+...+...+...+.+|+.+++.|++.+| +-+.+|.++.+++.+.+++... .
T Consensus 65 ~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k-----------~~l~~~~~~~~i~~~~~~~~~~-----------------~ 116 (452)
T PRK11273 65 LGFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPW-----------------A 116 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCc-----------hhHHHHHHHHHHHHHHHHhhhc-----------------c
Confidence 34455666777777888888886655443 3467777877777776655320 0
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHH-hhhh
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFF-STFL 398 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~l-g~~l 398 (482)
.-+.++++...++.++++....|.....+.+..|++.||+++|+++...++|+.+ ++++
T Consensus 117 ~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 1134556667788999999988888888889999999999999999999888754 4443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00048 Score=73.37 Aligned_cols=98 Identities=11% Similarity=0.165 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNV 421 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~ 421 (482)
+.+.++.-.+++|+-|....|....+..+.-.++.||..+|+|+.+.++|+++|+++...+.+..+.....+|
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW------- 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW------- 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence 4455666679999999999999999999999999999999999999999999999998876543332223334
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011595 422 SHLDYYYAFFAILNVLNFVFFLVVAKFY 449 (482)
Q Consensus 422 ~~~~~~f~~~~~l~~l~~ll~~~~~~~~ 449 (482)
.+.|.+-|+++++.+++..+..+.-
T Consensus 206 ---~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 206 ---RWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred ---eeehhHHHHHHHHHHheEEEEecCC
Confidence 5678888988888887765555443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00069 Score=70.22 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=84.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..++..+...+..|+.+++.|+..+ .+-+..|.++.+++.+.+.... ..
T Consensus 50 ~g~~~~~~~~~~~i~~~~~g~l~dr~g~-----------k~~l~~~~~~~~~~~~~~~~~~-----------------~~ 101 (402)
T TIGR00897 50 SASAFTLYGIAAAISAWISGVVAEIIGP-----------LKTMMIGLLLWCVGHAAFIVFG-----------------LG 101 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHHHHHHHHh-----------------cc
Confidence 4566677888888888998888665433 3445677777777765432211 00
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHH-HHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGN-FFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~-~lg~~l~~~~~ 403 (482)
..+.+.++...++.++|.....+.....+.+..|++.||+++|++....++|. .+|+.+.+.+.
T Consensus 102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11345556677889999888888888888899999999999999999999986 57888876554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.2e-05 Score=67.27 Aligned_cols=87 Identities=10% Similarity=0.118 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+.+.+++.+++.+...|...++..|.+|++ +|++++++++...++|..+++.+++++.+..+|+..|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 4566777888999999999999999999999876 5899999999999999999999999999988999999988
Q ss_pred HHHHHHHHHHHHh
Q 011595 113 TLGLSISIAIFFA 125 (482)
Q Consensus 113 ~i~~~l~~i~~~~ 125 (482)
++...++.+..+.
T Consensus 124 ~~~~~~~~~~~~~ 136 (141)
T TIGR00880 124 AILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHhh
Confidence 8766666555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00028 Score=75.44 Aligned_cols=110 Identities=6% Similarity=0.083 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHH
Q 011595 265 GFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIF 344 (482)
Q Consensus 265 ~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~ 344 (482)
........++.|+.+++.|++ ++..+-+.+|.++.+++.+.+++.. . ...
T Consensus 57 ~~~~~~~~~~~~~~G~laDr~----------~G~r~~~~~g~~~~~~g~~~~~~~~-------------------~-~~~ 106 (489)
T PRK10207 57 GAFAALVYGLISIGGYVGDHL----------LGTKRTIVLGAIVLAIGYFMTGMSL-------------------L-KPD 106 (489)
T ss_pred HHHHHHHHHHHhhHHHhhhhc----------cchHHHHHHHHHHHHHHHHHHHHhc-------------------c-chh
Confidence 334445555567788886652 2334567889999999888776531 0 111
Q ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHhhcCch--hhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 345 VLLPQFVLMGTADAFLEVAKIEFFYDQAPEN--MKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 345 ~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~--~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+....+++++|+.+..|...+++.++.|++ .|+...+.++...++|..+|+.+++.+.+
T Consensus 107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335778899999999999999999999887 55888999999999999999999988763
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00043 Score=71.66 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=87.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..+...+...++.|+.+++.|++.|| +-+.++.++.+++.+.+.+..
T Consensus 40 ~~~~~~~~~l~~~l~~~~~G~laDr~grr-----------~vl~~~~~~~~~~~~~~~~~~------------------- 89 (393)
T PRK11195 40 QPLLQMFFVLAYIVLAPFVGAFADSFPKG-----------RVMFIANGIKLLGCLLMLFGI------------------- 89 (393)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhccCCc-----------hhhHHHHHHHHHHHHHHHHHH-------------------
Confidence 45667778888899999999997766554 335666666666655443321
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+. +...+++|+++.+..|...+.+.+..|++.|+.++|.+....++|..+||.+++.+.+
T Consensus 90 --~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 90 --HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred --HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 3456789999999999999999999999999999999999999999999999998763
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00057 Score=72.77 Aligned_cols=107 Identities=7% Similarity=-0.052 Sum_probs=73.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccch
Q 011595 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLT 342 (482)
Q Consensus 263 ~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 342 (482)
......+...+..++.+++.|++.+| +.+.++.++.+++.++.++.. +
T Consensus 76 ~~~~~~~~~~~~~~~~G~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~~---------------------s 123 (476)
T PLN00028 76 AGIASVSGSIFSRLAMGPVCDLYGPR-----------YGSAFLLMLTAPAVFCMSLVS---------------------S 123 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHhc---------------------C
Confidence 34445555556667777776555433 335667777777766555431 3
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhh
Q 011595 343 IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTV 402 (482)
Q Consensus 343 ~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~ 402 (482)
.+.++...++.|+++.... ....++.+..|++.||.++|+++...++|..+++.+...+
T Consensus 124 ~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 124 ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566788999997654 4566788999999999999999888778888777666544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00044 Score=74.03 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=87.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
++.....+..++..++.+++.|++.|| +-+.+++++..++.++.++... . ....
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr-----------~~~~~~~~~~~v~~~~~~~~~~--------~-------~~~~ 113 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRK-----------RVYGMELIIMIIATVASGLSPG--------S-------SPKS 113 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHHHccC--------c-------ccch
Confidence 456666777777788888886666554 3346677777776665554210 0 0012
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+.++++...++.|+|+....+....++.+..|++.||+++++......+|..+++.+...+.
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999999999999999999999999999998876553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0003 Score=72.51 Aligned_cols=62 Identities=10% Similarity=-0.134 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc
Q 011595 35 GIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN 102 (482)
Q Consensus 35 ~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~ 102 (482)
.+.+.|-.+.+..+-.+.-.-+.+.+-||+++ ||..+-.+=.+++.+|.++|.++.+.|..+
T Consensus 141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~------qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD------QRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hhhHHhHHHHHHhhhHhhccccHHHHhhCCcc------hhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 57788888999999999888899999999987 689999999999999999999999988654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.001 Score=70.10 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=87.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++......+...+..|+.+++.+|+.+ .+-+.+|+++.+++.+++.... ..
T Consensus 64 gl~~~~~~~g~~i~~~~~g~l~dr~G~-----------r~~l~~g~~~~~~~~~l~~~~~------------------~a 114 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGILMKKLSY-----------KAGIITGLFLYALGAALFWPAA------------------EI 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHHHHHH------------------hc
Confidence 456677778888888888888655544 4457788888888887653211 01
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.++++...+++|+|.....+....++.+..|++.++..+++......+|..+|++++..+.
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677788899999999999999999998888887777899999999999999998876543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=71.97 Aligned_cols=119 Identities=11% Similarity=0.136 Sum_probs=84.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchh
Q 011595 297 TLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENM 376 (482)
Q Consensus 297 s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~ 376 (482)
++.+-+.+|.++.+++.+++++... + ....+.+.+.+..++.|+|+....+.....+.+..| +.
T Consensus 89 G~R~vllig~ll~~iG~ll~ala~~---------~------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 89 GPRPIFVLSMTVFCLGTLLFALTFQ---------E------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhc---------c------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 4456678999999999988876420 0 001256677788899999999999998899999887 67
Q ss_pred hHHHHHHHHHHhhHHHHH-hhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011595 377 KSLGTSYSMTTLGVGNFF-STFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFY 449 (482)
Q Consensus 377 ~G~~~g~~~l~~~iG~~l-g~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~ 449 (482)
||.++|++....++|+.+ +++..+++.+ +...+|++++++.++.+++.+.+.+..
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~------------------~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAFFSD------------------NTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 899999999999999975 4444443321 123456666777777666655555443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00064 Score=71.83 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=87.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..++..+..++.+++.+++.|++.|| +-+.++.++.+++.+..++.+....... ....
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~~~---------~~~~ 117 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTSIG---------PDNT 117 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhcccccccc---------ccch
Confidence 4556777788888888999887766555 3456677777766665554221000000 0001
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+++++...+++|+|.....|...+++.+..|++.||.++|++.....+|..+++.+...+.
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123456677799999999999999999999999999999999999999999998887765543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0014 Score=67.83 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQ-RMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQF 350 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~-k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~ 350 (482)
.++.|+++.+.||+..+. .+..+ -+.++.++.++++..+++.+ ...++++++..+
T Consensus 46 ~~~~~l~g~~~Dr~~~~~------~g~rr~~l~~~~~~~~l~~~~l~~~~------------------~~~~~~~l~~~~ 101 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPL------LGRRRGWLLLTQVGLAASIAAMAFCP------------------PHAALWPLAGLA 101 (402)
T ss_pred HHHHHHHHHHHHcccccC------CCcchhHHHHHHHHHHHHHHHHHhcC------------------ccchHHHHHHHH
Confidence 466677777766541110 12223 35666777777776665431 012455666676
Q ss_pred HHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 351 VLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 351 ~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
++.++......|...+++.+..|++.|+.+.++.....++|..+++.+...+.
T Consensus 102 ~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 102 VLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77888899999999999999999999999999999999999999988877665
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00074 Score=72.42 Aligned_cols=133 Identities=9% Similarity=0.120 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
...++.+++.|+. .++.+.+.+|.++.+++..++++.. .+.+++....++
T Consensus 72 ~~~~~~G~LaDr~----------~G~r~~~~~g~~~~~ig~~l~~~~~--------------------~~~~~l~~~~~l 121 (500)
T PRK09584 72 GLVAIGGWLGDKV----------LGTKRVIMLGAIVLAIGYALVAWSG--------------------HDAGIVYMGMAT 121 (500)
T ss_pred HHHHHHHHHHHhc----------cchHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHH
Confidence 3345677775552 1234456788888888877665421 122345566788
Q ss_pred HhHHHHHhhhhhHHHHHhhcCch--hhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHH
Q 011595 353 MGTADAFLEVAKIEFFYDQAPEN--MKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAF 430 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~--~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~ 430 (482)
+++|..+..|...+++.++.|++ .++...++++...++|..+|+.+.+.+.+.. + +...|.+
T Consensus 122 ~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g----------~~~~F~i 185 (500)
T PRK09584 122 IAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY------G----------WSVAFAL 185 (500)
T ss_pred HHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh------C----------HHHHHHH
Confidence 99999999999999999998764 3456788899999999999999998776311 1 2445666
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 011595 431 FAILNVLNFVFFLVVAKFYVY 451 (482)
Q Consensus 431 ~~~l~~l~~ll~~~~~~~~~~ 451 (482)
.++.++++.+.++...+++++
T Consensus 186 ~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 186 SVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred HHHHHHHHHHHHHHhHHHhcc
Confidence 555556666666665555443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0099 Score=64.72 Aligned_cols=80 Identities=6% Similarity=-0.117 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHH-HhHhHhhhhhcccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALF-ANTVLVYIQDNMGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~i-g~~l~~~L~~~~g~~~~F~i 111 (482)
+.+.+++.+++.|+|.+.+.+.....+.++||+ +|+++.++.....++|+++ +++..+++.+ +|+..|++
T Consensus 119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~ 189 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFF 189 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH
Confidence 678889999999999999999999999999973 4899999999999999975 6666666653 57777777
Q ss_pred hHHHHHHHHH
Q 011595 112 PTLGLSISIA 121 (482)
Q Consensus 112 ~~i~~~l~~i 121 (482)
.++..++..+
T Consensus 190 l~vl~~vv~l 199 (591)
T PTZ00207 190 LMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHH
Confidence 7755544433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00061 Score=72.31 Aligned_cols=175 Identities=14% Similarity=0.146 Sum_probs=105.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQR-MGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQ 338 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k-~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (482)
.+..+.+.++..++.+|+.+++.|+.-.|+++ .+- +..|.+..++++.++.+..........+ . +.+.
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR-------Rrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~---~-~~~~ 109 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR-------RRPFIAAGAALVAFAVILIGFAADIGHLFGDN---L-DKKT 109 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC-------hHHHHHHHHHHHHHHHHHHHhCchhhhhcccc---c-cccc
Confidence 44667888999999999999998864334322 222 3446777777777766543211000000 0 0001
Q ss_pred ccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhh--HHHHHHHHHHhhHHHHHhhhhhhhhc--ccccc--CCcc
Q 011595 339 VPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMK--SLGTSYSMTTLGVGNFFSTFLLSTVS--NITKR--HGHK 412 (482)
Q Consensus 339 ~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~--G~~~g~~~l~~~iG~~lg~~l~~~~~--~~~~~--~~~~ 412 (482)
....+++.+..+.+..++--...++.-+++.+.+|++.| +.+.+......++|+.+|..++++.. +..+. ....
T Consensus 110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 122234445555566667777788889999999999865 67899999999999999999988642 11100 0001
Q ss_pred ccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 011595 413 GWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYV 450 (482)
Q Consensus 413 ~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~ 450 (482)
+.++ .++...|.+.+++.+++.++..+..|..+
T Consensus 190 ~~~~-----~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 190 GVSC-----ANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred cccc-----chHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 1111 13445566666666666666666666544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00033 Score=82.57 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=83.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
...++..+..+++.|+.+++.|++.+|+. .+....+.++.+ +....++. ..
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~--------~~~~~~~~~~~~-~~~~~~~~--------------------~~ 106 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKL--------AKILKFAEIGIA-ALAIYGFH--------------------LN 106 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHH--------HHHHHHHHHHHH-HHHHHHHH--------------------Hh
Confidence 34455667778888999999877766521 111111111111 11111111 12
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
++++++...+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+++.+..
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888889999999999999999999999999999999999999999999999999998764
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0011 Score=67.31 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHH
Q 011595 275 VVLYDRYFVKIMRRWTKNPRGITLLQR-MGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353 (482)
Q Consensus 275 ~pl~~~l~~~~~~k~~~~~~~~s~~~k-~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~ 353 (482)
.|+.+.+.|+...| +....+. +..+.++.++++..+++.. ...+.+++...+++.
T Consensus 38 ~~~~g~~~Dr~~~~------~~Grr~~~l~~~~~~~~~~~~~l~~~~------------------~~~~l~~l~~~~~~~ 93 (356)
T TIGR00901 38 KFLWSPLVDTVYLP------FFGRRRSWLVLTQVLLLSLLLILSFLV------------------PSTDLPLLAGLAFLI 93 (356)
T ss_pred HHHHHHHHhcccCC------CCCccHHHHHHHHHHHHHHHHHHHcCC------------------cchhHHHHHHHHHHH
Confidence 56666665544211 1344444 3566777776665555431 012455666667788
Q ss_pred hHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 354 GTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 354 ~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+++-....|+..+++.+..|++.|+.+.|+.....++|..+++.+.+.+..
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888899999999999999999999999999999999999999887653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00077 Score=71.28 Aligned_cols=136 Identities=13% Similarity=0.007 Sum_probs=91.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..++..+...+..|+.+++.|++.+| +.+.++.++.+++.+++++..
T Consensus 56 ~~~~~s~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~------------------- 105 (455)
T TIGR00892 56 TAWISSIMLAVLYAGGPISSILVNRFGCR-----------PVVIAGGLLASLGMILASFSS------------------- 105 (455)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHcCch-----------HHHHhhHHHHHHHHHHHHHhh-------------------
Confidence 34555666666677788888886655433 345677777777777665532
Q ss_pred cchHHHHHH-HHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCC
Q 011595 340 PLTIFVLLP-QFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNN 418 (482)
Q Consensus 340 ~is~~~li~-~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ 418 (482)
+.+.++. ..++.++++....++....+.+..| +.||+++|+++....+|..+++.+.+.+.+.. +
T Consensus 106 --~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------g----- 171 (455)
T TIGR00892 106 --NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------G----- 171 (455)
T ss_pred --hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------C-----
Confidence 2333333 3367799998777777777777776 68999999999999999999999888765321 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHh
Q 011595 419 LNVSHLDYYYAFFAILNVLNFVFFLV 444 (482)
Q Consensus 419 ~~~~~~~~~f~~~~~l~~l~~ll~~~ 444 (482)
+...|.+.+++++++.+..++
T Consensus 172 -----wr~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 172 -----WRGSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHH
Confidence 234566666666655544333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0043 Score=66.38 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHH
Q 011595 302 MGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGT 381 (482)
Q Consensus 302 ~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~ 381 (482)
+.++.++.+++.+.+++.. ...+.+++....++.+++.....+...+++.+..|++.||.++
T Consensus 84 ll~~~i~~~~~~~~~a~~~------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~ 145 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLE------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGA 145 (491)
T ss_pred HHHHHHHHHHHHHHHHHcC------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Confidence 5566677767766665532 0235677777888899999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhhhhhhhhc
Q 011595 382 SYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 382 g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
|+......+|..+++.+...+.
T Consensus 146 ~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 146 AISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887765
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0024 Score=67.09 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=84.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccch
Q 011595 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLT 342 (482)
Q Consensus 263 ~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 342 (482)
+...-...-.+++...+++.|++ ++.+-+.++++..++..++.++.. +
T Consensus 67 I~s~F~ysYal~qIp~GlLaDrl-----------G~K~vL~l~~l~Wsl~t~L~~fa~---------------------S 114 (511)
T TIGR00806 67 IIPVLPYSHLAVLVPVFLLTDYL-----------RYKPVLVLQALSFVCVWLLLLLGT---------------------S 114 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHHH---------------------H
Confidence 33344445555666666765444 344556777777777766666542 5
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 343 IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 343 ~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.+....+++|++|.... ....++++..|++.|++++|+++....+|..+++.+++.+.
T Consensus 115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999 99999999999999999999999999999999999998843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00052 Score=72.19 Aligned_cols=95 Identities=11% Similarity=0.123 Sum_probs=69.2
Q ss_pred chHHHHHHH-HHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 341 LTIFVLLPQ-FVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 341 is~~~li~~-~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
++.+..+.. .++.|++--+++....+.-+++..++.+|+++|++.+..+++..+||.+........+
T Consensus 385 v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g------------ 452 (488)
T KOG2325|consen 385 VPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG------------ 452 (488)
T ss_pred cChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC------------
Confidence 344444444 4678888889999999999999999999999999999999999999999887765332
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011595 420 NVSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 451 (482)
Q Consensus 420 ~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~ 451 (482)
+.+.|.+.+.+.++.+.+..+..+|...
T Consensus 453 ----~~~v~~~~~~~~l~~~~l~~~~~~r~~~ 480 (488)
T KOG2325|consen 453 ----PRPVWIILLCLLLVVAALWIVFLKRLVP 480 (488)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2345555555555555555555555544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.004 Score=65.84 Aligned_cols=110 Identities=12% Similarity=-0.025 Sum_probs=71.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
++.+++.+...++....+++.|++ .+.+.+.+++++.++..+..++.-. +...
T Consensus 74 ~l~ai~~l~~al~rip~G~l~Dr~-----------G~R~v~~~~~ll~~i~~~~~~~a~~----------------~~~~ 126 (462)
T PRK15034 74 LLTALPSVSGALLRVPYSFMVPIF-----------GGRRWTVFSTAILIIPCVWLGIAVQ----------------NPNT 126 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----------CChHHHHHHHHHHHHHHHHHHHHHc----------------ccCC
Confidence 344445555555544456664433 3344567777777777776665310 0012
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhh
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLL 399 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~ 399 (482)
|.+.++...++.|++ ....+..+..+.+..|+++||+++|++....++|..++..+.
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 566778888999998 557788999999999999999999999544445554443333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0013 Score=77.46 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=86.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
++..++..+..+++.|+.+++.|++.+| +.+.++.++.+++.++..+... .
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk-----------~~l~~~~~~~~~~~~~~~~~~~------------------~ 100 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKN-----------RVIRIVKLFEVGLTLLIVLAYY------------------L 100 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence 4555666677778888888887655444 3344555544444433322210 1
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
-++++++...+++|+++.+..|...+++.+..|++.||.++|+.....++|..+|+.+++.+..
T Consensus 101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 101 GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1456777888999999999999999999999999999999999999999999999999988764
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.016 Score=60.88 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=95.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcc---CC
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVE---KG 336 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~---~~ 336 (482)
.-.+..++.+.+-+...+.+-.+..+.||..+ +....-+.+|.++.-+++++.-+- ...+..+-+ ++
T Consensus 277 ~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~ 346 (461)
T KOG3098|consen 277 TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPP 346 (461)
T ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccc
Confidence 33456667777777766655555555554322 455555677877777776654321 111111000 00
Q ss_pred CcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCcccccc
Q 011595 337 QQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWIL 416 (482)
Q Consensus 337 ~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 416 (482)
..-..+......-++++|+|+.......+.++....| +.|..+-+++-+-.++++..+........
T Consensus 347 ~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~~------------- 412 (461)
T KOG3098|consen 347 LLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYLL------------- 412 (461)
T ss_pred cccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhhH-------------
Confidence 0001123344556689999999999999999999994 45777888888888777776555443211
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011595 417 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 451 (482)
Q Consensus 417 ~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~ 451 (482)
...+.+...+++.+...++....++.+.
T Consensus 413 -------l~~~~l~~~i~~~i~~~~~~~~~~~~~~ 440 (461)
T KOG3098|consen 413 -------LYIYTLGLPIFCVIATTIFFIVAERTQA 440 (461)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123345556777777777777777653
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.61 E-value=1.1e-05 Score=86.85 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=3.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh-----------
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD----------- 101 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~----------- 101 (482)
-..+++++.++.|+|...+.|.-.+++=|..++++ -.-.++++|.+..+|.++|.++++.+.+
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 35788899999999999999999999999988764 4678999999999999999999997643
Q ss_pred ----------ccc-ccchhhhhHHHHHHHHHHHHhcCcceee
Q 011595 102 ----------NMG-WTLGYGLPTLGLSISIAIFFAGTPFYRH 132 (482)
Q Consensus 102 ----------~~g-~~~~F~i~~i~~~l~~i~~~~~~~~~~~ 132 (482)
+.| |+++|++.++..++..+-++++-|++++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp ------------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 123 9999999998887777766666665544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0023 Score=68.85 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=91.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+..+....+-.+++.|+.+.+.|++-|| +.+...-++.++..+.+.+.... .
T Consensus 47 valv~~a~~LP~~Llsl~aG~laDr~drr-----------rili~~~~~~~~~~~~L~~l~~~----------------~ 99 (524)
T PF05977_consen 47 VALVQAASTLPILLLSLFAGALADRFDRR-----------RILILSQLLRALVALLLAVLAFF----------------G 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccch-----------HHHHHHHHHHHHHHHHHHHHHHh----------------C
Confidence 45677788888899999999997665444 33455555554444444333211 1
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
..++|.++...++.+++..+..|.-++.+-+++|++.-..++++..+..++...+||.++|.+..
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35677777788999999999999999999999999999999999999999999999999998763
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0019 Score=68.83 Aligned_cols=143 Identities=11% Similarity=0.085 Sum_probs=92.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccch
Q 011595 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLT 342 (482)
Q Consensus 263 ~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 342 (482)
+.........+..++.+++.||+. .+.+.+.+|.++.+++.++++..+ .+
T Consensus 50 i~~~~~~~~~l~~ligG~LaDRil----------Grrr~iliG~il~~lg~lll~~~~--------------------~~ 99 (493)
T PRK15462 50 LFSAYCSLVYVTPILGGFLADKVL----------GNRMAVMLGALLMAIGHVVLGASE--------------------IH 99 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc----------CcHHHHHHHHHHHHHHHHHHHHhh--------------------cc
Confidence 334444555556667888876652 223446788888888876554321 01
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCch--hhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCC
Q 011595 343 IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPEN--MKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420 (482)
Q Consensus 343 ~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~--~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~ 420 (482)
..+......+..+|..+..|...+++.++.|++ .|+...++.+...++|+.++|.+.+.+.+.. +
T Consensus 100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------G------- 166 (493)
T PRK15462 100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------S------- 166 (493)
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------C-------
Confidence 112333444555676677787788899998875 7999999999999999999999998775311 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011595 421 VSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 451 (482)
Q Consensus 421 ~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~ 451 (482)
+...|.+.++.++++.+.++...|++++
T Consensus 167 ---w~~~F~iaaigm~l~li~~~~~~~~l~~ 194 (493)
T PRK15462 167 ---WAMGFGLAAVGMIAGLVIFLCGNRHFTH 194 (493)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 2344556566666666666655555443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0014 Score=66.45 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=83.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++..+++.+...+..|+.+++.|++.+| +.+.+|.++.+++.+.. ..
T Consensus 37 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~-~~-------------------- 84 (355)
T TIGR00896 37 AGLLTALPVLCFAVLAPLAPWLARRFGEE-----------RSVAAGLLLIAAGILIR-SA-------------------- 84 (355)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCch-----------HHHHHHHHHHHHHHHHH-Hh--------------------
Confidence 45677888888888899999886655443 34566777766665543 21
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.++++...++.++|.....+.....+.+..| ++||.++|.+....++|..+++.+.+.+.
T Consensus 85 -~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 85 -PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred -ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134556677788999999988888888877776 57999999999999999999998887665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00085 Score=69.95 Aligned_cols=122 Identities=12% Similarity=0.163 Sum_probs=85.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+.+..+..+.-.+..|+.+.+.|+...|++++ ...+.+|..+.+++++.+.... + ....
T Consensus 38 g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grr------r~~i~~~~~~~~i~~~~~~~~~--------~-------~~~~ 96 (437)
T TIGR00792 38 GTLFLVARILDAITDPIMGNIVDRTRTRWGKF------RPWLLIGAIPFSIVLVLLFTTP--------D-------FSAT 96 (437)
T ss_pred HHHHHHHHHHHHhccchheEeeecCCCCCCCc------chhHHHhHHHHHHHHHHHHhCC--------C-------CCcc
Confidence 45566667777888888888877654443321 2235667777777776654321 0 0011
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhc-CchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQA-PENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~a-P~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
...+|.+..+++.+++..+..++..+...... |++.|+...+.......+|+.+++.+.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~ 160 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV 160 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788888899999998888888888877 5688999999999998898888877765544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0019 Score=68.37 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=90.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCch
Q 011595 296 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPEN 375 (482)
Q Consensus 296 ~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~ 375 (482)
.+..+.+.++.++.+++-++.-+.. ..+.+.++...+++|++|....|..-.+..+-+|++
T Consensus 100 ~G~r~v~~~~~~~sa~~t~l~P~aa-------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~ 160 (466)
T KOG2532|consen 100 FGARRVFFISGLISALLTLLTPLAA-------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN 160 (466)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHH-------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence 3555667788888877766654432 234456677889999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 376 MKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 376 ~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
.|++..++......+|..++.-+.+.+.+. ..|| ...|.+.|++.++..+++..+.+.
T Consensus 161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-----~~GW----------~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 161 ERSTFIAILTAGSQLGTIITMPVSGLLCES-----SLGW----------PSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-----CCCC----------chHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999888887753 2356 233446677777777776665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0081 Score=62.90 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=70.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchh
Q 011595 297 TLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENM 376 (482)
Q Consensus 297 s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~ 376 (482)
++.+-+.+++++.+++.+..++...+.. ....++.+++...+++|+|+....|...+++.+..|++.
T Consensus 91 Grr~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 91 GRKKSMLISVCMMCFGSLVIACLPGYET-------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcCCchh-------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 3345577888888888777665421100 001234567778899999999999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 377 KSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 377 ~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
||.+++++......|..+++.+...+.
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888877655443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00019 Score=75.15 Aligned_cols=89 Identities=10% Similarity=0.080 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHH-HHHHHHHHHHhHhHhhhhhc------cccc
Q 011595 34 LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWM-FSIFFGALFANTVLVYIQDN------MGWT 106 (482)
Q Consensus 34 ~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y-~~iNiG~~ig~~l~~~L~~~------~g~~ 106 (482)
.+.+++..++.+++.+...|....++.|++|++ +|++++++++ ...++|.++||+++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 455667788899999999999999999999965 5899999997 56789999999999999887 4699
Q ss_pred chhhhhHHHHHHHHHHHHhcCc
Q 011595 107 LGYGLPTLGLSISIAIFFAGTP 128 (482)
Q Consensus 107 ~~F~i~~i~~~l~~i~~~~~~~ 128 (482)
..|.+.++..+++.+++++..+
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999888776666665554444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00015 Score=74.81 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=52.3
Q ss_pred hhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHH
Q 011595 362 VAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVF 441 (482)
Q Consensus 362 p~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll 441 (482)
.+-...-....|.+.||++-|++-.+.-.|.++|....+...+.. .+.+.+. ...++++++++++..++
T Consensus 425 ~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~--------yp~~~g~---~~v~~i~~~~~~~gi~~ 493 (538)
T KOG0252|consen 425 ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN--------YPPNIGV---RNVFIILAGCMLLGILF 493 (538)
T ss_pred ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc--------CCccccc---hHHHHHHHHHHHHhHhe
Confidence 344444567889999999999999999999999998887665311 2223332 34567778888877777
Q ss_pred HHhhh
Q 011595 442 FLVVA 446 (482)
Q Consensus 442 ~~~~~ 446 (482)
.+++-
T Consensus 494 T~l~p 498 (538)
T KOG0252|consen 494 TLLIP 498 (538)
T ss_pred eEEee
Confidence 66554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=66.89 Aligned_cols=107 Identities=14% Similarity=0.138 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+..|+.+++.|++.+ ++-+.+|.++.+++.+++.+...... ......++++...++
T Consensus 50 i~~~~~G~l~dr~g~-----------r~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~r~l 105 (394)
T TIGR00883 50 LGAIVFGHFGDRIGR-----------KKTLVITLLMMGIGTLLIGLLPSYAT-------------IGIWAPILLLLARLI 105 (394)
T ss_pred hHHHHhhhhhhhhhh-----------HHHHHHHHHHHHHHHHHHhhCCChhh-------------hHHHHHHHHHHHHHH
Confidence 455667777555443 34467788888888777665421100 001112346667799
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+|+|.....+....++.+..|++.||.+++.+.....+|..+++.+...+.
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876554
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0041 Score=64.12 Aligned_cols=117 Identities=6% Similarity=-0.089 Sum_probs=71.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+....+..+...+.+|+.+++.|+..||+ .+..+++..+++........... ..
T Consensus 40 ~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~-----------~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 94 (396)
T TIGR00882 40 TGIVFSCISLFSILFQPLFGLISDKLGLKK-----------HLLWIISGLLVLFAPFFIYVFGP--------------LL 94 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHHHhhh--------------HH
Confidence 356778888999999999999988776552 22333333333222211110000 00
Q ss_pred cc-hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PL-TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~i-s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.. ..+......++.+++.....|...+++.+..++ ++...|......++|..+|+.+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 95 QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence 01 122334556778888888888888877665443 345667777777899999999988765
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0023 Score=68.31 Aligned_cols=93 Identities=13% Similarity=0.043 Sum_probs=70.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchh
Q 011595 297 TLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENM 376 (482)
Q Consensus 297 s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~ 376 (482)
+..+.+.+++++.+++.+++++...+.. -| ..++++++...+++|+|+....+....++.+..|++.
T Consensus 85 Grr~~l~~~~~l~~i~~~~~a~~~~~~~-----~g--------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~ 151 (490)
T PRK10642 85 GRQKILAITIVIMSISTFCIGLIPSYAT-----IG--------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK 151 (490)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccHHH-----HH--------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC
Confidence 3345578889999988888776532100 00 0112246777899999999999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHhhhhhhhh
Q 011595 377 KSLGTSYSMTTLGVGNFFSTFLLSTV 402 (482)
Q Consensus 377 ~G~~~g~~~l~~~iG~~lg~~l~~~~ 402 (482)
||.+++++.....+|..+|+.+...+
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888766544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.32 E-value=2.2e-07 Score=97.52 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc---ccccchh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN---MGWTLGY 109 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~---~g~~~~F 109 (482)
+...+.++|++.|+|.|+..+....++.+..|++ +|++..+++..+.++|.+++..++-.+.+. .+||..+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence 6888999999999999999999999999999876 588999999999999999888777655433 4599998
Q ss_pred hhhHHHHHHH
Q 011595 110 GLPTLGLSIS 119 (482)
Q Consensus 110 ~i~~i~~~l~ 119 (482)
.+.++..++.
T Consensus 175 ~~~~~~~l~~ 184 (451)
T PF00083_consen 175 IFGAIPSLLV 184 (451)
T ss_pred cccccccccc
Confidence 8877554443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.015 Score=60.05 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhh--HHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCC
Q 011595 343 IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMK--SLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLN 420 (482)
Q Consensus 343 ~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~--G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~ 420 (482)
.++++....+.+..+....|...+.+.+..|++.| +.+++......++|..+|+.+++.+.+.. +|
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw------ 172 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF------ 172 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch------
Confidence 34443344444545556778888888777666543 56678888899999999999998876321 22
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhh
Q 011595 421 VSHLDYYYAFFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 421 ~~~~~~~f~~~~~l~~l~~ll~~~~~~ 447 (482)
...|...+++.++.++..++..|
T Consensus 173 ----~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 173 ----TVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455656655555555444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0036 Score=65.77 Aligned_cols=111 Identities=18% Similarity=0.076 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHH
Q 011595 273 ICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVL 352 (482)
Q Consensus 273 i~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l 352 (482)
+..|+.+.+.-++.+|+ ++.+.+.+++++.+++.++.++...+.. .+ ..+++.++...++
T Consensus 75 ~~~~~g~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~l~~~R~l 134 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRL-------GRKRMLMLTVWMMGIATALIGLLPSFST-----IG--------WWAPVLLVTLRAI 134 (438)
T ss_pred HHHhhHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHhcCCcHHH-----HH--------HHHHHHHHHHHHH
Confidence 44555544444445553 4455677788888888777766431100 00 0112346667899
Q ss_pred HhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 353 MGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 353 ~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+|+|+....|....++.+..|++.||.+++.......+|..++..+...+.
T Consensus 135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988877766543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0056 Score=62.88 Aligned_cols=113 Identities=9% Similarity=0.004 Sum_probs=72.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.++...+..+..++..|+.+.+.|+..|+. ...+.+.++..+. +... ...
T Consensus 41 iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~--~~~~-~~~-------------------- 90 (382)
T PRK11128 41 IGLLLGAGLVARFLGSLLIAPRVKDPSQLI-------PALRLLALLTLLF--AVAF-WFG-------------------- 90 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcchH-------HHHHHHHHHHHHH--HHHH-HHh--------------------
Confidence 456777888888888999888877665431 1112222222111 1111 110
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
..+.|.++...++.+++.....|...+.+.+. ++.|+..+|......++|..+||.+++.+.+
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 12455666677778988888888877776655 3456777888888888999999999987764
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0061 Score=62.70 Aligned_cols=61 Identities=7% Similarity=-0.120 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
++|+++...++++.+.....|...+.+.+ +++.|+...|......++|..+|+.+++.+.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~ 153 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG 153 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888887777654 35778999999999999999999999887764
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.19 E-value=7e-05 Score=80.79 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=3.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhh----------
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSV--AKD---------- 329 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~--~~~---------- 329 (482)
.+.+.+=+..+++..+..++ ..| -+..+-+++|.+++++|.+++++.+-....+ ...
T Consensus 42 ~i~s~~di~~~~~~~~vsy~----g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 42 LISSSYDIGSLVVVLFVSYF----GGR-------GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhh-------cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 44444445555555444444 333 2446668999999999999998877431111 000
Q ss_pred cCCc--------cC---------CCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHH
Q 011595 330 HSIV--------EK---------GQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGN 392 (482)
Q Consensus 330 ~~~~--------~~---------~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~ 392 (482)
...- .+ ........++++.+-++.|+|..-..+.+.+++-+.++++..+.|.|+.+....+|-
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 0000 00 001122246677788999999999999999999999999999999999999999998
Q ss_pred HHhhhhhhhhc----cccc--------cCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 011595 393 FFSTFLLSTVS----NITK--------RHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYK 452 (482)
Q Consensus 393 ~lg~~l~~~~~----~~~~--------~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~ 452 (482)
.+|-++++.+. ++.. ..++..|+.+ ...-|.+.+.+.++.++-+..+=|++...
T Consensus 191 a~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA------WWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 191 ALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA------WWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH------HHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 88877777553 2221 1224445422 22346677777777777777776776655
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.031 Score=60.76 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=81.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
-.|+.+.+.+...+..|+.+++.|-+.||+ -+..|.++..+|.++++-.+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC-------------------
Confidence 457788888988999999999998887774 35788999999998877432
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
++.-++...++.++|-..... ....+.+..|.+.|+...++..+...+....|+.+.+.+.
T Consensus 130 --~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 130 --NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred --cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 333466778888888665554 3455789999999988877776665555556666665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.017 Score=62.07 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=90.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+++.+...+...+..++.+++.|++.||. -+.++.++..+|.++.++.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHh---------------------
Confidence 67888888888888999999887776663 3677888888888877764
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhh
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFL 398 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l 398 (482)
.++++++...++.|+|-.+.+....-++...+|++.||.+.++..+...+|..+|-.+
T Consensus 140 ~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 140 PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2667899999999999999999999999999999999999999999999888888333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.038 Score=57.90 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhh
Q 011595 298 LLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMK 377 (482)
Q Consensus 298 ~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~ 377 (482)
+++.+.++.++.+++.+++++...+.. . . .....+++...+++|+++....|....++.+..|++.|
T Consensus 85 rr~~l~~~~~~~~~~~~l~~~~~~~~~--------~----~-~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~r 151 (434)
T PRK15075 85 RRKGLIVTLSIMASGTLLIAFVPGYAT--------I----G-LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRK 151 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCcHHH--------H----H-HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccc
Confidence 345567788888888777766421100 0 0 00012356667899999999999889999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 378 SLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 378 G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
|.++++.....++|..+|+.+++.+.
T Consensus 152 g~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 152 GFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888777766553
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=61.89 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=90.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
-++......+...+..|+++++- .|. -+..+-+.+|.+++.+|-++...++..
T Consensus 73 fG~viaa~slg~~i~~liF~~Ws----~k~------~~~k~Pli~s~ii~~~g~llY~~l~~~----------------- 125 (488)
T KOG2325|consen 73 FGLVIAASSLGHAIFSLIFGIWS----NKT------GSVKKPLIVSFLIAIIGNLLYLALAYV----------------- 125 (488)
T ss_pred hhHHHHHHHHHHHhcchhhcccc----ccc------CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 45666778888888888888873 221 233455789999999999988555421
Q ss_pred cc-hHHHHHHHHHHHhHHHHHh-hhhhHHHHHhhcCchhhHHHHHHH--HHHhhHHHHHhhhhhhhhccccccCCccccc
Q 011595 340 PL-TIFVLLPQFVLMGTADAFL-EVAKIEFFYDQAPENMKSLGTSYS--MTTLGVGNFFSTFLLSTVSNITKRHGHKGWI 415 (482)
Q Consensus 340 ~i-s~~~li~~~~l~~lgE~l~-sp~~~~~~~~~aP~~~~G~~~g~~--~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~ 415 (482)
+- +.|+++.++++.|+|-.-. ---.+.-..+..+.++|..+.... -+...+|..+++.+.++-.+. -.|+
T Consensus 126 ~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G------~~i~ 199 (488)
T KOG2325|consen 126 PNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG------FMIL 199 (488)
T ss_pred ccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc------eEEc
Confidence 12 5688999999999994444 344444444455666665544443 334444444444444443321 2233
Q ss_pred c-CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 011595 416 L-NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYK 452 (482)
Q Consensus 416 ~-~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~ 452 (482)
+ .++|. ++.-=++.+.+.++..++..+..|...++
T Consensus 200 ~~~~~n~--YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 200 PGLIFNM--YTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred CcceEEe--cchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 3 22222 22222334455666666666655554443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.019 Score=60.96 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcC-chhhHHH
Q 011595 302 MGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAP-ENMKSLG 380 (482)
Q Consensus 302 ~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP-~~~~G~~ 380 (482)
+.+|.+..++++.++.... +. ....-..|....|++..++.-+.+.+-.++....++ ++.|+..
T Consensus 83 il~g~i~~~i~~~llf~~p--------~~-------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l 147 (460)
T PRK11462 83 VLFGALPFGIVCVLAYSTP--------DL-------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISL 147 (460)
T ss_pred HhHHHHHHHHHHHHHHhCC--------CC-------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHH
Confidence 4567777777776654321 00 001125688889999999999999999999999998 6999999
Q ss_pred HHHHHHHhhHHHHHhhhhhhhhc
Q 011595 381 TSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 381 ~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
++.......+|..+++.+...+.
T Consensus 148 ~s~r~~~~~iG~~~~~~~~~plv 170 (460)
T PRK11462 148 QSWRFVLATAGGMLSTVLMMPLV 170 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877765443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0078 Score=61.06 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=83.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+.+.+--.+.=.+..|+++++.|++.|| + .+.+|.+..++++.+.+...
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRk-------p----vll~c~~~va~s~ll~~~S~-------------------- 119 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRK-------P----VLLACLIGVALSYLLWALSR-------------------- 119 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCch-------H----HHHHHHHHHHHHHHHHHHHH--------------------
Confidence 3444445556667788999997777666 2 24667777888777766532
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+...++.+-++.|+.-..+++. -+++.+.++++.|+..|+......++|-++||.+++++..
T Consensus 120 -~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 -NFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -HHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 2334455577888777777654 4899999999999999999999999999999999998875
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.014 Score=61.42 Aligned_cols=120 Identities=8% Similarity=0.028 Sum_probs=76.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
.+..+.-++-.+..|+.+.+.|+.-.|++++ ..-+.+|.+..+++++++.... +. ....
T Consensus 49 ~i~~i~~i~dai~dp~~G~lsD~~~~r~Grr------rp~il~~~~~~~i~~~l~f~~p--------~~-------~~~~ 107 (444)
T PRK09669 49 TMFLVVRVLDAVTDPLMGALVDRTRTRHGQF------RPYLLWFAIPFGVVCLLTFYTP--------DF-------GATG 107 (444)
T ss_pred HHHHHHHHHHHcccceeeEeeecCCCCCCCc------chhHHHHHHHHHHHHHHHHhCC--------CC-------Ccch
Confidence 3344445555556677777766544443221 1224566667777665443221 00 1122
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhc-CchhhHHHHHHHHHHhhHHHHHhhhhhhhh
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQA-PENMKSLGTSYSMTTLGVGNFFSTFLLSTV 402 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~a-P~~~~G~~~g~~~l~~~iG~~lg~~l~~~~ 402 (482)
..+|....+++.+++..++.++..+...... +++.|+..++.-.....+|+.+++.+...+
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl 169 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPL 169 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888889988887 457799888888888888888887765443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.34 Score=49.38 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=60.1
Q ss_pred cchhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchh
Q 011595 30 STLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGY 109 (482)
Q Consensus 30 ~~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F 109 (482)
...+...+++.+.+.++|.|+ .|...++-.+..|... |..-.-.+ .-..+|.++...+.=.+..++|||+-.
T Consensus 162 ~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l 233 (528)
T KOG0253|consen 162 ASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLL 233 (528)
T ss_pred CCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344677888999999999999 9999999999888753 33333333 445578888887777777788998765
Q ss_pred hhhH-HHHHHHHHHHH
Q 011595 110 GLPT-LGLSISIAIFF 124 (482)
Q Consensus 110 ~i~~-i~~~l~~i~~~ 124 (482)
+... ..++.+...++
T Consensus 234 ~~~~~pl~~~a~f~~w 249 (528)
T KOG0253|consen 234 FTSSTPLMFAARFLVW 249 (528)
T ss_pred HHHHhHHHHHHHHHhh
Confidence 5444 34444433333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.14 Score=52.75 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=71.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchH--HHHHHHHHHHhHHHHHhhhhhHHHHHhhcCc
Q 011595 297 TLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTI--FVLLPQFVLMGTADAFLEVAKIEFFYDQAPE 374 (482)
Q Consensus 297 s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~--~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~ 374 (482)
+...-+..|.++.+.+..++.+.-..-.....+ ++.+... ......+.++|+|--....+.++.+.+.+|+
T Consensus 48 rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~-------~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e 120 (403)
T PF03209_consen 48 RRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQ-------SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE 120 (403)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHcccccc-------cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH
Confidence 344456788888888777665543221100000 0112222 2345578889999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 375 NMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 375 ~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+.|+...++.+.+.-+|..++..+.+.+-
T Consensus 121 ~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 121 ERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998887554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.036 Score=57.69 Aligned_cols=118 Identities=9% Similarity=-0.043 Sum_probs=61.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+...++..+...+..|+.+++.||+.+|+ .+.++..+.+++...+...... . . -
T Consensus 48 ~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~~~-~-~-----------~- 102 (420)
T PRK09528 48 TGIIFSANSLFALLFQPLYGLISDKLGLKK-----------HLLWIISGLLVLFGPFFIYVFA-P-L-----------L- 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHHHHH-H-H-----------H-
Confidence 456788899999999999999987765542 2333333333332211110000 0 0 0
Q ss_pred cchHHH-HHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFV-LLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~-li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
....++ .+...++.+.+-....+...++..+. .+.+|..+|......++|..+++.+.+.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 166 (420)
T PRK09528 103 QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN 166 (420)
T ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence 000111 11112222222222223333333222 2346778888888889999999999887753
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.029 Score=57.63 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCch---h
Q 011595 300 QRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPEN---M 376 (482)
Q Consensus 300 ~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~---~ 376 (482)
+-+.+|.++..+|.+++.+.... ... ....+...+..+..++++|..+.-|...++..+|.+++ .
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~-------~~~-----~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP-------PSL-----PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS-------SSC-----------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc-------chh-----hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 45678999999999886654210 000 11234456788889999999999999999999999886 3
Q ss_pred hHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 011595 377 KSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYK 452 (482)
Q Consensus 377 ~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~ 452 (482)
|..+-..++...++|..++..+.+.+.+. ..+...|.+.++.++++.++|+...++|+..
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 45556667888899999998888776531 1235678888888899999998888888766
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.023 Score=62.62 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=102.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhh-----hcC-------------CccC----CC----cccchHH-H
Q 011595 297 TLLQRMGIGLVIHIIIMVIASFTERYR----LSVAK-----DHS-------------IVEK----GQ----QVPLTIF-V 345 (482)
Q Consensus 297 s~~~k~~iG~~l~~i~~~~~~~~~~~~----~~~~~-----~~~-------------~~~~----~~----~~~is~~-~ 345 (482)
...+-+++|.+++++|.++.++.+..- ++... ... -..+ +. .....+| .
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 445567899999999999998886431 11100 000 0000 01 1121233 4
Q ss_pred HHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc----cc-ccc----CCcccccc
Q 011595 346 LLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS----NI-TKR----HGHKGWIL 416 (482)
Q Consensus 346 li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~----~~-~~~----~~~~~w~~ 416 (482)
++.+-++.|+|+--..+.|.+++-+.+-++...+|.|+.+....+|-.+|-+++++.. +. ... ..+..|+.
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence 5557799999999999999999999999999999999999999888888777777653 33 110 12445542
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 011595 417 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYK 452 (482)
Q Consensus 417 ~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~ 452 (482)
....-|++++++++++++-++++=|.+++.
T Consensus 320 ------AWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 320 ------AWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 233357788888888888888877776654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.062 Score=57.06 Aligned_cols=118 Identities=9% Similarity=0.084 Sum_probs=77.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
.+..+..++-.+..|+.+.+.|+.-.|++++ ..-+.+|.+..++++.++.... +.....
T Consensus 46 ~i~~i~ri~dai~dp~~G~lsD~t~sr~Grr------rp~il~g~i~~~i~~~llf~~p---------------~~~~~~ 104 (473)
T PRK10429 46 TLFLVARIWDAINDPIMGWIVNNTRSRWGKF------KPWILIGTLANSVVLFLLFSAH---------------LFEGTA 104 (473)
T ss_pred HHHHHHHHHHHHhhchheeehhcCCCCCCCc------chhHhhhhHHHHHHHHHHHcCC---------------CCCccH
Confidence 4455555566666677777766543333221 2224667777777766553210 000112
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhc-CchhhHHHHHHHHHHhhHHHHHhhhhhh
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQA-PENMKSLGTSYSMTTLGVGNFFSTFLLS 400 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~a-P~~~~G~~~g~~~l~~~iG~~lg~~l~~ 400 (482)
..+|.+..|++..++.-+..++..++....+ +++.|....+.-.+..++|+.+.+.+..
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888889999999999999999999999 5789999988867777777666655544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.14 Score=52.61 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcch
Q 011595 344 FVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSH 423 (482)
Q Consensus 344 ~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~ 423 (482)
.|++....+.++......+....+..+..+++.++.+.+.......+|..+|+.+.+.+.+.. +|
T Consensus 98 ~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw--------- 162 (390)
T TIGR02718 98 GWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ--------- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH---------
Confidence 455555555666666777777778888888888888888888888888888887766554321 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 011595 424 LDYYYAFFAILNVLNFVFFLV 444 (482)
Q Consensus 424 ~~~~f~~~~~l~~l~~ll~~~ 444 (482)
...|.+.+++.++..+..+.
T Consensus 163 -~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 163 -RPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 33466666666555554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.18 Score=53.52 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhh
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLS 400 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~ 400 (482)
+...++..-++.|+...+......-++...+|++.||.+..+..+...+|..+|.+++.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 55678889999999999999999999999999999999999999999999999877765
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.02 Score=60.14 Aligned_cols=139 Identities=10% Similarity=0.140 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHH
Q 011595 274 CVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLM 353 (482)
Q Consensus 274 ~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~ 353 (482)
..-+.+|+-|+++.+ .+-+.+|-+++++|.++++..+ ..+...+..+.+++
T Consensus 77 t~i~GG~laDr~LG~----------~~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~~I 127 (498)
T COG3104 77 TPIIGGWLADRVLGT----------RRTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLALI 127 (498)
T ss_pred HHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHHHH
Confidence 334667776666444 5668899999999999887531 01334677888888
Q ss_pred hHHHHHhhhhhHHHHHhhcCch--hhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHH
Q 011595 354 GTADAFLEVAKIEFFYDQAPEN--MKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFF 431 (482)
Q Consensus 354 ~lgE~l~sp~~~~~~~~~aP~~--~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~ 431 (482)
++|-.++-|...++..++-|++ +|-...++++...++|+.++|.+.+.+.. +. .+..-|.+.
T Consensus 128 ~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~-------------~~---g~~~gF~~a 191 (498)
T COG3104 128 IVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI-------------NY---GWHVGFGLA 191 (498)
T ss_pred HhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH-------------hh---CHHHHHHHH
Confidence 9999999999999999988772 35556788888999999999999887753 11 134568888
Q ss_pred HHHHHHHHHHHHhhhhcccccccccc
Q 011595 432 AILNVLNFVFFLVVAKFYVYKAEVSD 457 (482)
Q Consensus 432 ~~l~~l~~ll~~~~~~~~~~~~~~~~ 457 (482)
++-+.++.+.|++..|++.......+
T Consensus 192 avGm~~gl~~f~~~~r~~~~~~~~~~ 217 (498)
T COG3104 192 AVGMIIGLVIFLLGRRHVKGIGGVPD 217 (498)
T ss_pred HHHHHHHHHHHHHccchhcCCCCCCC
Confidence 88888888899998888776544333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.005 Score=64.39 Aligned_cols=89 Identities=13% Similarity=0.261 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCc-hhhHHH
Q 011595 302 MGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPE-NMKSLG 380 (482)
Q Consensus 302 ~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~-~~~G~~ 380 (482)
+.+|..+.++++.++...... + ........|+...+++..++.-+...+..+...+.++. +.|...
T Consensus 75 ~l~g~i~~~~~~~llf~~~p~--------~-----~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l 141 (428)
T PF13347_consen 75 ILIGAILLALSFFLLFSPPPA--------G-----LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRL 141 (428)
T ss_pred eehhhHHHHHHHHHhhccccc--------h-----hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhH
Confidence 467888888888877643100 0 01122456788888888999999999999999999985 789999
Q ss_pred HHHHHHHhhHHHHHhhhhhhhhc
Q 011595 381 TSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 381 ~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
.+.-.+...+|+.+...+...+.
T Consensus 142 ~~~~~~~~~~g~~l~~~~~~~l~ 164 (428)
T PF13347_consen 142 SSWRMIFSMIGSLLASFLAPILV 164 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999977777766655
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.051 Score=54.44 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+..+.+..+++.+.|-.+..+..+.++....|++.+++.+++...+.++|..+||.+++.+.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999765
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.13 Score=52.89 Aligned_cols=150 Identities=12% Similarity=0.066 Sum_probs=87.2
Q ss_pred eCccccchhhHHHHHHH---HHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcc
Q 011595 258 IPPASLIGFVTLSMLIC---VVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVE 334 (482)
Q Consensus 258 i~~~~~~~in~i~ili~---~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
+++++...+..+-++.. .-+++.+ .+| +.+.+-..+++++..+-.+..++...
T Consensus 46 LS~~q~~ll~aiPil~GallRl~~g~l----~dr-------fGgR~~~~~s~~l~~IP~~~~~~a~~------------- 101 (417)
T COG2223 46 LSEGQKGLLVAIPILVGALLRLPYGFL----TDR-------FGGRKWTILSMLLLLIPCLGLAFAVT------------- 101 (417)
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHhh----hcc-------cCchHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 66766655555444443 3334443 333 45555667788888888777776531
Q ss_pred CCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCcccc
Q 011595 335 KGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGW 414 (482)
Q Consensus 335 ~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w 414 (482)
..+.|+++..-.+.|++-.-. ..++..+.+.-||+.+|.++|++. ..|+|..+...+...+.... +|
T Consensus 102 -----~~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~------g~ 168 (417)
T COG2223 102 -----YPSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF------GF 168 (417)
T ss_pred -----CCchHHHHHHHHHHhccccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH------hh
Confidence 123344444446666554433 467788889999999999999998 77777766655555443211 10
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011595 415 ILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 451 (482)
Q Consensus 415 ~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~ 451 (482)
+.....-.+....++++.+++++..+....
T Consensus 169 -------~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~ 198 (417)
T COG2223 169 -------LAWRNVAGIYVVALAIAAVLAWLGMNDVPE 198 (417)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 000111223345566667777776655433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.22 Score=51.23 Aligned_cols=91 Identities=11% Similarity=0.117 Sum_probs=73.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCch
Q 011595 296 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPEN 375 (482)
Q Consensus 296 ~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~ 375 (482)
.+.++-+.+|+.++++|..+..=... .-+....+.+.++++.|-.+.-.+++.++..+.|++
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAAS------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhh------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence 57778899999999999877542110 123345566778899999999999999999999998
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 376 MKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 376 ~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
....=+.+.....++|..+||.+++.+..
T Consensus 137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 137 SAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888999999999999999999987764
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.11 Score=55.75 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=88.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+|..++......+..|+...+. +|+ +-...+..|.+++++|+++..+..
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l~----~rf-------g~R~v~i~G~~v~~~g~~lssF~~------------------- 132 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSALC----NRF-------GCRTVMIAGGLVAALGLLLSSFAT------------------- 132 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHHH----hhc-------CchHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 56888888888888889888874 452 344557889999999999988753
Q ss_pred cchHHHHHHHH-HHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQF-VLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~-~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
++|.++..| ++-|+|-.++..+....+.. -.+++|++++|+.....++|..+=+.+...+.+
T Consensus 133 --~i~~l~lt~gvi~G~G~~~~~~paiviv~~-YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~ 195 (509)
T KOG2504|consen 133 --SLWQLYLTFGVIGGLGLGLIYLPAVVILGT-YFEKKRALATGIAVSGTGVGTVVFPPLLKYLLS 195 (509)
T ss_pred --hHHHHHHHHHHHhhccchhhhcchhhhhhh-HhHHHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence 566677766 88999999999988888874 566779999999999999988887777766553
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.084 Score=54.89 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=24.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhh
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRR 288 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k 288 (482)
.+.+.++|.+.-++.+|+++.+.||+..|
T Consensus 45 iG~i~s~~~~~~l~~qp~~G~i~Dklg~k 73 (412)
T PF01306_consen 45 IGIIFSAGSLFALLAQPVYGFISDKLGLK 73 (412)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcchhhhh
Confidence 45778889999999999999998877655
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.22 Score=53.42 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=74.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchH
Q 011595 264 IGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTI 343 (482)
Q Consensus 264 ~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~ 343 (482)
+++.-+.+++..-+++.+.|++.|| .-+.+++++..++-+..++. -++
T Consensus 124 ~s~~~~G~~vG~~i~g~lsD~~GRk-----------~~~~~~~~~~~i~~~~~a~a---------------------~~~ 171 (521)
T KOG0255|consen 124 QSLFFLGVLVGSLIFGPLSDRFGRK-----------PVLLVSLLLFIIFGILTAFA---------------------PNY 171 (521)
T ss_pred HHHHHHHHHHHHhhheehHhhcccH-----------HHHHHHHHHHHHHHHHHHHh---------------------CcH
Confidence 3333344444444455554443333 33455666666655554443 256
Q ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 344 FVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 344 ~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
++.++.-++.|++..-....+...+.+..+++.|+.++.+ ......++.+++.+++.+.
T Consensus 172 ~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 172 WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred HHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 7788888999999999999999999999999999999999 7777777777777777665
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.029 Score=59.79 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc-ccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG-WTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g-~~~~F~i 111 (482)
+.+.+++.=++.|+..|...+..-++.++..|++ +..++|++|...-...+.+||++.+.+.+..| .|.+|+.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 5566777778899999999999999999999987 45889999999999999999999999988776 7899888
Q ss_pred hHHHHHHHHHHHHh
Q 011595 112 PTLGLSISIAIFFA 125 (482)
Q Consensus 112 ~~i~~~l~~i~~~~ 125 (482)
..+.+++++++++.
T Consensus 453 l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 453 LLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHhh
Confidence 88777777776643
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.35 Score=49.09 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=86.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+.+.+++-+..-++.|+..++ .|| ++.-+-+.+++++.++|.++=..
T Consensus 49 aGlLTtLPll~fg~~ap~a~~L----ar~-------~g~er~l~~~Llli~~G~~iR~~--------------------- 96 (395)
T COG2807 49 AGLLTTLPLLAFGLFAPAAPRL----ARR-------FGEERSLFLALLLIAAGILIRSL--------------------- 96 (395)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH----HHH-------HhhHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 4456667766666777766665 455 57777788888888888654221
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.+.+-++....+.+.|-...+.....++-+.-|++ .+.+||+|..+.++|..+++.+.-.+.+
T Consensus 97 -~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~ 159 (395)
T COG2807 97 -GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQ 159 (395)
T ss_pred -ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHH
Confidence 13456777889999999999999999999999987 6899999999999999999998876654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.38 E-value=3.2 Score=44.14 Aligned_cols=41 Identities=7% Similarity=0.103 Sum_probs=35.4
Q ss_pred cchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh
Q 011595 54 NISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ 100 (482)
Q Consensus 54 ~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~ 100 (482)
.-.++..|.+..+ |-.|.|.+++.+.|+|.++|+.+..++.
T Consensus 149 lFW~fandi~t~~------qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTID------EAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999876 4578999999999999999999999886
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.44 Score=49.98 Aligned_cols=108 Identities=9% Similarity=0.114 Sum_probs=63.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQR-MGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k-~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
+.+..+..+.-.+..|+.+++.|+..+|+++ .+. +.+|.+..++...++.... .+. ..
T Consensus 47 g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr-------~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~ 105 (448)
T PRK09848 47 GTMLLLVRVFDAFADVFAGRVVDSVNTRWGK-------FRPFLLFGTAPLMIFSVLVFWVP---------TDW-----SH 105 (448)
T ss_pred HHHHHHHHHHHHHhhhhheeeeecCCCCCcC-------chHHHHHHHHHHHHHHHHHHhCc---------CCC-----Cc
Confidence 4556667777788888888888766544332 221 2444444443333322110 000 01
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCc-hhhHHHHHHHHHHhh
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPE-NMKSLGTSYSMTTLG 389 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~-~~~G~~~g~~~l~~~ 389 (482)
....+|....+++.+++..+..++..+......+. +.|...++.-....+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~ 156 (448)
T PRK09848 106 SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAAS 156 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 12456777788889999999998888877766655 567777666554433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.13 Score=54.18 Aligned_cols=100 Identities=12% Similarity=0.151 Sum_probs=71.9
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCc-hhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPE-NMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~-~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
.+..|....|++++++.-+++.+--++...+.+. +.|....+......++|+.+...+...+....+
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g------------ 177 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG------------ 177 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------
Confidence 4567888899999999999999999999998866 889999999999999999988888776653221
Q ss_pred Ccch-hHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 011595 420 NVSH-LDYYYAFFAILNVLNFVFFLVVAKFYVYKA 453 (482)
Q Consensus 420 ~~~~-~~~~f~~~~~l~~l~~ll~~~~~~~~~~~~ 453 (482)
+++ ..-++.+...+++++.+.++++.+..+.|.
T Consensus 178 -~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 178 -GGDKALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred -CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 111 112333444555666666666665554443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.84 E-value=2 Score=38.51 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhh
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTV 402 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~ 402 (482)
+.+.++++-++.|+|+.+.+...-.++...+.++.+++..|+++.....+...|.++.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999999999999999999998888888887777765444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.4 Score=42.68 Aligned_cols=122 Identities=11% Similarity=0.126 Sum_probs=79.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchh
Q 011595 297 TLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENM 376 (482)
Q Consensus 297 s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~ 376 (482)
+|..-+.+|.++..+|+.+....-. +. -...+.|.+.....+.+.|.............+.-|+ .
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~--------~~------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVS--------GR------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh--------Cc------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 5566678899999999887765421 10 0123555566566777888888877777777788886 6
Q ss_pred hHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 011595 377 KSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYV 450 (482)
Q Consensus 377 ~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~ 450 (482)
||.+.|+.--..++++.+-..+...+.+ + +...+..+++....+..++.....|..+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f~------------~-----~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFFG------------D-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHcC------------C-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 9999999999988888776665554442 1 1234455556555555555544555544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.07 Score=55.59 Aligned_cols=84 Identities=7% Similarity=-0.038 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHH-HHHHHHhHhHhhhhhccccc------chhhh
Q 011595 39 AALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIF-FGALFANTVLVYIQDNMGWT------LGYGL 111 (482)
Q Consensus 39 ~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iN-iG~~ig~~l~~~L~~~~g~~------~~F~i 111 (482)
++..+.|+..|++.+....++.+..|++ .|.++-+++....+ +|.++|..++|++.|++|-+ ..|.+
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~------~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v 379 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPE------LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLV 379 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCcc------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 3345689999999999999999999987 47889999888765 99999999999999987655 45556
Q ss_pred hHHHHHHHHHHHHhcCc
Q 011595 112 PTLGLSISIAIFFAGTP 128 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~ 128 (482)
+++..++..+++++..|
T Consensus 380 ~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 380 FAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 66555555555554433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.14 Score=53.49 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=94.3
Q ss_pred eCccccchhhHHH---HHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcc
Q 011595 258 IPPASLIGFVTLS---MLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVE 334 (482)
Q Consensus 258 i~~~~~~~in~i~---ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
.|.+....+|... .++.|-+++++-|++.||.. +..-++++.++-+.++... +.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v-----------YG~~liImIi~t~~~~~s~----------~~-- 137 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV-----------YGKELIIMIICSALSGLSV----------GT-- 137 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-----------hhHHHHHHHHHHHHhccCC----------CC--
Confidence 5666666666544 45566778888777777642 2334444444444333211 10
Q ss_pred CCCcccch-HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccc
Q 011595 335 KGQQVPLT-IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413 (482)
Q Consensus 335 ~~~~~~is-~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~ 413 (482)
..+.+ .+|+...-+++|+|-.-=.|..-+..+..+.++.||...+.....++.|...|..+...+....+..
T Consensus 138 ---~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~---- 210 (538)
T KOG0252|consen 138 ---TSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKI---- 210 (538)
T ss_pred ---CCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhcc----
Confidence 11222 3577777799999999999999999999999999999999999888888887777666554322210
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHHH
Q 011595 414 WILNNLNVSHLDYYYAFFAILNVLNFV 440 (482)
Q Consensus 414 w~~~~~~~~~~~~~f~~~~~l~~l~~l 440 (482)
++..-...+.+..|-+.-++.++-++
T Consensus 211 -~~~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 211 -FNGPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred -CCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 00001112466777665444444433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.00065 Score=71.24 Aligned_cols=106 Identities=14% Similarity=0.158 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHH
Q 011595 268 TLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLL 347 (482)
Q Consensus 268 ~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li 347 (482)
.+..++...+.+.+.|++.||. -+.++.++..++.++.++... ..+++++.
T Consensus 56 ~~g~~~G~~~~g~~~d~~GRk~-----------~~~~~~~~~~i~~~~~~~~~~------------------~~~~~~~~ 106 (451)
T PF00083_consen 56 FIGAIVGALIFGFLADRYGRKP-----------ALIISALLMIIGSILIAFAPS------------------YNNFWMLL 106 (451)
T ss_pred Hhhhcccccccccccccccccc-----------ccccccccccccccccccccc------------------cccccccc
Confidence 3334444455555545444442 234566666667666554310 02556778
Q ss_pred HHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhh
Q 011595 348 PQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTV 402 (482)
Q Consensus 348 ~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~ 402 (482)
...++.|+|-....+....++...+|++.||.+.++......+|..++..+.-.+
T Consensus 107 ~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 107 IGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8889999999999999999999999999999999999999999998888776544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.01 E-value=2.1 Score=45.46 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHH
Q 011595 268 TLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLL 347 (482)
Q Consensus 268 ~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li 347 (482)
++..++..|+.+.+.|+..|| ..+..-.+|.++-.+.+.. ..||.+
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~--------------------------~~~~~~ 117 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLF--------------------------QGYWFF 117 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHH--------------------------HHHHHh
Confidence 677788889999999888877 2333334444443333222 115554
Q ss_pred HHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 348 PQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 348 ~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+ ..=..-|-..+...+.+.+++.+.++.|....|+.+.+...+..++|.+++...+
T Consensus 118 ~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 118 L-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred h-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4 1122334445567788889999999999999999999999999999999987764
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.99 Score=47.50 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhc---Cch
Q 011595 299 LQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQA---PEN 375 (482)
Q Consensus 299 ~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~a---P~~ 375 (482)
..-+.+|.++.+++.+.++..... ..+.........+.++|..+.....-+...+.+ |++
T Consensus 59 ~~Y~~i~~~~~~~~~~~~~~~~~~-----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 59 KPYMIIGWLLGAVSALVLALLPAS-----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccc-----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 344677777777666666553210 112333445556677777777777766666555 556
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 376 MKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 376 ~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+|..++..+....+|+.++..++|...+
T Consensus 122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8999999999999999999999887654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=92.29 E-value=5.6 Score=41.33 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
++|.++.-.+..|+-...+.+.....+.+..|++.|-..||...++-++|..++++++-.+.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45555556677888888888888999999999999999999999999999999988875543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.64 Score=50.68 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHH
Q 011595 226 ATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIG 305 (482)
Q Consensus 226 ~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG 305 (482)
..++.|..+.|....++.+..-+..+-..+|.+-++.....|.+.++++.+....+.++ + +.-..+..++
T Consensus 193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~---~-------p~gsp~t~i~ 262 (571)
T KOG1237|consen 193 PSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYK---K-------PRGSPKTRIG 262 (571)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEee---C-------CCCCchhHHH
Confidence 44666777777777665555333331112677888999999999999997654433211 1 2222566778
Q ss_pred HHHHHHHHHHHH
Q 011595 306 LVIHIIIMVIAS 317 (482)
Q Consensus 306 ~~l~~i~~~~~~ 317 (482)
-++.+...-.-.
T Consensus 263 ~Vlvaa~~k~~~ 274 (571)
T KOG1237|consen 263 QVLVAAAFKRKA 274 (571)
T ss_pred HHHHHHHHHHhc
Confidence 888877776643
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.16 E-value=11 Score=37.14 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=35.4
Q ss_pred HHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhH
Q 011595 347 LPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGV 390 (482)
Q Consensus 347 i~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~i 390 (482)
++++.+.-..-.+.+|..+-+-.++.|+..|+..|-.+-+-.++
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni 391 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI 391 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence 56667766677788999999999999999999988777665543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.71 E-value=2 Score=45.09 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeC---ccccchhhHHHHHHHHHHHHHHHHHHhhhccC
Q 011595 215 KQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIP---PASLIGFVTLSMLICVVLYDRYFVKIMRRWTK 291 (482)
Q Consensus 215 k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~---~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~ 291 (482)
++++.+..+.+..-+.|...-+..+-|.+. +| +| .+..+..-|+.-++.+|+.+...|+.-.|+++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-------lG----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-------LG----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-------cC----CCcccccccccccccccceeccccccccccccccccc
Confidence 344445555555556666655555444331 12 22 33456778999999999999999988777765
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhh
Q 011595 292 NPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQ 371 (482)
Q Consensus 292 ~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~ 371 (482)
+ .| -+..|.+.+++++++..+.........++.. ...-+-++...++.+.++-++--....+.=++..+.
T Consensus 101 R----RP--fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~----~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl 170 (498)
T KOG0637|consen 101 R----RP--FILAGSLLIAVSLFLIGYAADIGLLLGDNER----KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADL 170 (498)
T ss_pred c----cc--hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc----cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHh
Confidence 3 22 3578888899998888776654333322111 001123445556666677777666666777888888
Q ss_pred cCchhhHH-HHHHHHHHhhHHHHHhhhhhhh
Q 011595 372 APENMKSL-GTSYSMTTLGVGNFFSTFLLST 401 (482)
Q Consensus 372 aP~~~~G~-~~g~~~l~~~iG~~lg~~l~~~ 401 (482)
+-...|-+ +++.+.++.++||.+|=.++++
T Consensus 171 ~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 171 ARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred ccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 76655555 9999999999999998777653
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=89.62 E-value=20 Score=38.24 Aligned_cols=53 Identities=11% Similarity=-0.073 Sum_probs=42.7
Q ss_pred HHhHHHHHhh----hhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 352 LMGTADAFLE----VAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 352 l~~lgE~l~s----p~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.-.+|++-+ -.-+.++.+....+.-.+.-++..+..++|..+|+.+...+.+
T Consensus 134 FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 134 FYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544 3667899999999999999999999999999999999887764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.35 Score=47.57 Aligned_cols=75 Identities=11% Similarity=-0.024 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcc---cccchhhhhH
Q 011595 37 FFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNM---GWTLGYGLPT 113 (482)
Q Consensus 37 ~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~---g~~~~F~i~~ 113 (482)
-+++..+.|+...+..-...+.++-..|++ +.+.+|+..+.-.|+|-++.|++.|.+.++- .|--+|.+..
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 356777888888877777788888888865 6899999999999999999999999998753 3544555444
Q ss_pred HHHH
Q 011595 114 LGLS 117 (482)
Q Consensus 114 i~~~ 117 (482)
..+.
T Consensus 429 ~~~a 432 (459)
T KOG4686|consen 429 GLMA 432 (459)
T ss_pred HHHH
Confidence 3333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.92 E-value=6.3 Score=40.13 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=66.4
Q ss_pred CCCCcchhhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCC-hhHHhhhhhHHHHHHHHHH-HHHHHHhHhHhhhhhcc
Q 011595 26 CKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFE-PKEKAHKLSFFNWWMFSIF-FGALFANTVLVYIQDNM 103 (482)
Q Consensus 26 ~~~~~~~~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~-~~~~~~r~~~fs~~y~~iN-iG~~ig~~l~~~L~~~~ 103 (482)
|-+....+...++++|++-|+++.+...+--+....+..+.+ |+| -...-|+......| +-++.+..++-++.+..
T Consensus 113 cl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~ 190 (354)
T PF05631_consen 113 CLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWF 190 (354)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence 433334478999999999999999998888777665544333 211 24555555442233 44555666666777766
Q ss_pred cc--cchhhhhHHHHHHHHHHHHhcCc
Q 011595 104 GW--TLGYGLPTLGLSISIAIFFAGTP 128 (482)
Q Consensus 104 g~--~~~F~i~~i~~~l~~i~~~~~~~ 128 (482)
+. ..+|..+.+...++.++....++
T Consensus 191 ~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 191 GFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 55 78999888887777776554443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=87.59 E-value=44 Score=35.84 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=34.1
Q ss_pred hhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhh
Q 011595 56 STIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQD 101 (482)
Q Consensus 56 ~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~ 101 (482)
.++..|.++.+ |-.|.|.++..+.|+|.+++..+..++.+
T Consensus 166 W~fAN~itt~~------eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVE------EAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777887765 45789999999999999999999988876
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=87.10 E-value=43 Score=35.26 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=50.5
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+...++...++-=+|--.......-+..+.+|++.||...|.-+...++-..+.-++.-.+.
T Consensus 353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455666666666667777778888899999999999999999999999888888776655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.98 E-value=1.2 Score=42.21 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHH-HHHHHHHHHhHhHhhhhhc--ccccchh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMF-SIFFGALFANTVLVYIQDN--MGWTLGY 109 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~-~iNiG~~ig~~l~~~L~~~--~g~~~~F 109 (482)
....+.+.+++.+++.|...|...+++.+.+++ . .+|...++.... ..++|..+++.+++.+... .+|+..|
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 567777888889999999999999999999997 2 157888898888 6889999999888877653 5788866
Q ss_pred hhhHHH
Q 011595 110 GLPTLG 115 (482)
Q Consensus 110 ~i~~i~ 115 (482)
.+....
T Consensus 168 ~~~~~~ 173 (338)
T COG0477 168 LLAALL 173 (338)
T ss_pred HHHHHH
Confidence 665543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.79 E-value=27 Score=36.18 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=45.2
Q ss_pred HHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 347 LPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 347 i~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+-+|.+.+.---.+...++++.++.+|+...|++|.+.+-..++|+..=..+...+.+
T Consensus 373 i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 373 ITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 3356665555556678999999999999999999999999888887766666665554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.34 E-value=7.6 Score=40.43 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=74.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccch
Q 011595 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLT 342 (482)
Q Consensus 263 ~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 342 (482)
..++.++.+.++.|+++.+.|.-..| .+.+.+...+..++...+.+.. + ...
T Consensus 63 ~~aia~llia~LapiLG~iaD~~g~R----------k~~~~~f~~i~i~~~~~L~~i~-----------------~-~s~ 114 (438)
T COG2270 63 ASAIAGLLIALLAPILGTIADYPGPR----------KKFFGFFTAIGIISTFLLWFIP-----------------P-GSY 114 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCc----------chHHHHHHHHHHHHHHHHHHhC-----------------C-Cch
Confidence 45677888889999999986543333 2233444444444444444321 0 124
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhh
Q 011595 343 IFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTF 397 (482)
Q Consensus 343 ~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~ 397 (482)
+++.+..+++..++--+.++...++.-+..+++..|+.+++-+-...+|+.+--.
T Consensus 115 ~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li 169 (438)
T COG2270 115 LLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLI 169 (438)
T ss_pred HHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHH
Confidence 5667778899999999999999999999999999999988877776666665433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=84.71 E-value=51 Score=34.46 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.+++-..-++.|++-.. -..-+++++..+|+++-=++++......-+|..+|+++++.+..
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655666655443 56777999999999988889998888888999999999887764
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=84.16 E-value=1.5 Score=46.61 Aligned_cols=74 Identities=11% Similarity=-0.083 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc-----ccchhhhh
Q 011595 38 FAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG-----WTLGYGLP 112 (482)
Q Consensus 38 ~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g-----~~~~F~i~ 112 (482)
....++.+++.|........++.+..|++ .++..|+++....|+|..+++.+++++.+++| |+..|+..
T Consensus 355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~------~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i 428 (468)
T TIGR00788 355 LGDSIIAEVLAQLKFMPFLVLLARLCPSG------CESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI 428 (468)
T ss_pred eehhHHHHHHHHHHHccHHHHHHHhCCCC------ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence 33445666666677777788888988877 36899999999999999999999999988887 76666544
Q ss_pred HHHHH
Q 011595 113 TLGLS 117 (482)
Q Consensus 113 ~i~~~ 117 (482)
.+...
T Consensus 429 ~i~~~ 433 (468)
T TIGR00788 429 LGHSL 433 (468)
T ss_pred HHHHH
Confidence 44333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=83.26 E-value=9.8 Score=39.55 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHH
Q 011595 277 LYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTA 356 (482)
Q Consensus 277 l~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lg 356 (482)
+..++..|+.-++ ++...|+.+..++.++|+++.++.+ ++++-+...++.+++
T Consensus 73 l~~Kl~aP~fi~~------v~y~~Ri~~~~~l~~~g~l~va~~~---------------------~v~~~l~Gv~las~s 125 (402)
T PF02487_consen 73 LLVKLIAPFFIHR------VPYWIRILICVALSAAGMLLVAFSP---------------------SVWVRLLGVVLASLS 125 (402)
T ss_pred HHHHHHhHhhhhh------ccchHHHHHHHHHHHHHHhheeecc---------------------chhHHHHHHHHHhhh
Confidence 4445555554332 5778889999999999999876632 234444555555555
Q ss_pred HHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 357 DAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 357 E~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
-.+--.+-+.+... -|+ ...+.|...++.++.+|+.....+.
T Consensus 126 sg~GE~tfL~lt~~-y~~----~~l~~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 126 SGLGEVTFLSLTHF-YGK----SSLSAWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred hhhhHHHHHHHHHh-cCc----cccccccCCcChhhHHHHHHHHHHH
Confidence 44444455555443 343 3578888888888998888776554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.46 E-value=13 Score=34.77 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCc-hhhHHHHHHHHH-HhhHHHHHhhhhhhhhc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPE-NMKSLGTSYSMT-TLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~-~~~G~~~g~~~l-~~~iG~~lg~~l~~~~~ 403 (482)
+.++++...++.++++....|...+.+.+..|+ +.|+...+.... ...+|..+++.+.+.+.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666668999999999999999999998 778888888888 57788888887766554
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.96 E-value=19 Score=37.90 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 346 LLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 346 li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
....-.+-+.+|.++...-.-.+..--|++.|+.+..+-.+..-+|..+|.++-..+.+
T Consensus 143 ~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 143 THTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred hHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 34455667778887775544555666799999999888888877777777777776664
|
|
| >PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=81.71 E-value=23 Score=33.13 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=59.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchH
Q 011595 264 IGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTI 343 (482)
Q Consensus 264 ~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~ 343 (482)
.-+|.+.+.+..++..+..++..+|+ .+..++..+++-..++....+.............+ +.+.....
T Consensus 105 lG~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~----~~~~~~~~ 173 (205)
T PF01891_consen 105 LGANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG----DYPWMALV 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cccHHHHH
Confidence 45688888888888888888876663 22333444444444444443333221111111100 00112234
Q ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHhhcCc
Q 011595 344 FVLLPQFVLMGTADAFLEVAKIEFFYDQAPE 374 (482)
Q Consensus 344 ~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~ 374 (482)
..+.+.+..+++.|.+.+....++..+.-|+
T Consensus 174 ~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 174 QAYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566788889999999999999999988875
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=80.09 E-value=20 Score=37.88 Aligned_cols=124 Identities=16% Similarity=0.236 Sum_probs=64.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCch
Q 011595 296 ITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPEN 375 (482)
Q Consensus 296 ~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~ 375 (482)
++...|+..++++..+-+++....- . .+.+.....+..+...++.+++-.+.......++.. .|++
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~-~------------~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~ 137 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLV-K------------VQTSETGFFVTTMASVVIINSGMALLQGSLFGLAGV-FPST 137 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhhee-e------------ecCCcchHHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH
Confidence 5666778888776555544433211 0 000111234445556677888888888888888764 5544
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 011595 376 MKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNFVFFLVV 445 (482)
Q Consensus 376 ~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~ 445 (482)
+++.+...+++++.++.++--... ....+++ ....+. ..||.+..++.+++.+.|...
T Consensus 138 ----~~~a~~~G~g~aGv~~s~~~ii~~-a~~~~~~------~~~~~a-~~YF~~a~~v~l~~i~~~~~l 195 (437)
T TIGR00939 138 ----YSSAVMSGQGLAGVLTSLAMILVK-ASGNDSH------GLKKSA-LGYFGTPCVVQLICIVCYLLL 195 (437)
T ss_pred ----HHHHHHhcchhHHHHHHHHHHHHH-HhcCCcc------chhhhh-hhHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666555533222 1110000 011111 235555556666666666544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 482 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-08 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 2e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 482 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 1e-118 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 5e-10 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 357 bits (917), Expect = e-118
Identities = 79/441 (17%), Positives = 161/441 (36%), Gaps = 38/441 (8%)
Query: 30 STLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGA 89
+ F+ L+ +A+G+GG KP +S+ DQFD+ F+ + F+I FG+
Sbjct: 105 FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ---KAFDMFYFTINFGS 161
Query: 90 LFANTVLVYIQDNMGWTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVA 149
FA+ + + N G + +G+P + + ++ F+ G Y H P VI +
Sbjct: 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221
Query: 150 AIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNKAAV----------KTSS 199
A+ V N + L A I + + A V
Sbjct: 222 ALLTK-VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280
Query: 200 TNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIP 259
V+ + +L ++ + ++ Q + ++ Q + +
Sbjct: 281 ERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK----PQWFE 336
Query: 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFT 319
PA + L +++ + + + R T L++MG G+ I + ++
Sbjct: 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTI 393
Query: 320 ERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSL 379
+ L+IF + + L+ + + +EF Y QAP+ MK
Sbjct: 394 QLMM------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441
Query: 380 GTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNF 439
S+ ++ VGN + +V + T + + ++V+ + FFA +L
Sbjct: 442 IMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMF--FFAGFAILAA 496
Query: 440 VFFLVVAKFYVYKAEVSDSME 460
+ F + A+ Y + +
Sbjct: 497 IVFALYARSYQMQDHYRQATG 517
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 61/429 (14%), Positives = 142/429 (33%), Gaps = 76/429 (17%)
Query: 34 LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFAN 93
F ++ + +GTG KPN+ST+ +DE + + + F+ ++F I GA A
Sbjct: 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRD----AGFSIFVFGINLGAFIAP 163
Query: 94 TVLVYIQDNMGWTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRK 153
++ Q+ G+ + + L +G+ I + +++ G + + + K
Sbjct: 164 LIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVK 223
Query: 154 WN------VPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNKAAVKTSSTNPWMLCS 207
+ + + + L Y + + F WM+ S
Sbjct: 224 VSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFA------------WMISS 271
Query: 208 V-TQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTL----DRAIGSSFKIPPAS 262
V E ++++ IP+ +A + + + L + SS+ P +
Sbjct: 272 VKVTSTEHLRVVSYIPLFIAAVL-------FWAIEEQGSVVLATFAAERVDSSW-FPVSW 323
Query: 263 LIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHII---IMVIASFT 319
L +++ F + W K + + +GL+ + +M I
Sbjct: 324 FQSLNPLFIMLYTPF----FAWLWTAWKK--NQPSSPTKFAVGLMFAGLSFLLMAIPG-- 375
Query: 320 ERYRLSVAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSL 379
++ +V V + L+ + + + AP+ S
Sbjct: 376 -----------ALYGTSGKVSPLWLVGS--WALVILGEMLISPVGLSVTTKLAPKAFNSQ 422
Query: 380 GTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYAFFAILNVLNF 439
S + VG+ + ++ N Y+++F + +V+
Sbjct: 423 MMSMWFLSSSVGSALN-----------------AQLVTLYNAKSEVAYFSYFGLGSVVLG 465
Query: 440 VFFLVVAKF 448
+ + ++K
Sbjct: 466 IVLVFLSKR 474
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.88 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.87 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.71 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.52 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.43 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.28 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.2 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.69 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.68 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.6 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.54 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.36 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 96.23 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-23 Score=219.58 Aligned_cols=380 Identities=20% Similarity=0.327 Sum_probs=224.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|+|.|+..|+..++++|++|+++. .++...+++++.+.++|.++||.+++++.+++||++.|++.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 567888999999999999999999999999997641 12356788899999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCc-------
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQ------- 185 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 185 (482)
++..+++.+.+++.+++..+++|++++..+..+.+..+.+++..... ....+...........+ .++.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 260 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYA---LVNIPTLGIVAG 260 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHT---GGGTTTTCSSHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhh---hcccchhhhhhh
Confidence 98877776666554444433333332222222222222221110000 00000000000000000 00000
Q ss_pred -------------cchh--hhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhccc
Q 011595 186 -------------NLRF--FNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDR 250 (482)
Q Consensus 186 -------------~~~~--~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~ 250 (482)
...| ++..+... +.++.+++|..+....+++....++..+.|..+.+..+..+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
T 2xut_A 261 LCCAMVLVMGFVGAGASLQLERARKSH---------PDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK 331 (524)
T ss_dssp HHHHHHHHHHHHHTGGGTHHHHSCCSC---------CSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCC
T ss_pred hhhhhhhhhcccccchhhHHhhhhccc---------cHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCC
Confidence 0011 11111000 11112234444445556666677777888877777666554433
Q ss_pred CCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 011595 251 AIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDH 330 (482)
Q Consensus 251 ~~~~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~ 330 (482)
. .+ .+.+.+..++++..++..|+.+++..+..+|++++ +++.+++.+|+++.+++++++.+.+...
T Consensus 332 ~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~------- 397 (524)
T 2xut_A 332 P---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM------- 397 (524)
T ss_dssp C---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-------
T ss_pred C---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 2 11 24667788888889999999888766666664322 5677888899999998887765532100
Q ss_pred CCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCC
Q 011595 331 SIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHG 410 (482)
Q Consensus 331 ~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~ 410 (482)
+.....+.+|+++.+++.++|+.+..|..++++.+.+|+++||+++|+++...++|+.+|+.+.+.+.+.++
T Consensus 398 -----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~--- 469 (524)
T 2xut_A 398 -----DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV--- 469 (524)
T ss_dssp -----TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH---
T ss_pred -----cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 001134667888999999999999999999999999999999999999999999999999999998764321
Q ss_pred ccccccC-CCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 011595 411 HKGWILN-NLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKA 453 (482)
Q Consensus 411 ~~~w~~~-~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~~ 453 (482)
.+|.++ +.+.+ .+.|++++++++++++++++..++++++.
T Consensus 470 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 470 -TEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp -HHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC----------
T ss_pred -cccccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 234322 12211 23367778888888888877777665543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=202.12 Aligned_cols=353 Identities=15% Similarity=0.214 Sum_probs=227.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|+|.|...|+..++++|++|+++. +|+.++++++.+.++|.++||.+++++.+++||++.|++.
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 567888999999999999999999999999998742 4788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceee---cCCCCC-chhhHHHHHH--------------HHHHhcCCCCCCCCccccccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRH---KKPTGS-PFTRMAKVIV--------------AAIRKWNVPLPTNPKELYELDLEDYA 174 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~---~~p~~~-~~~~~~~v~~--------------~a~~~~~~~~~~~~~~~~~~~~~~~~ 174 (482)
++..+++++.+++..++... ++|+.. ...+..+... ........+. ++...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~----------~~~~~- 251 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL----------PAYIN- 251 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT----------THHHH-
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc----------ccchh-
Confidence 88777776665544333221 112111 1111111100 0000000000 00000
Q ss_pred hhccccccCCccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhh-cccCCC
Q 011595 175 QKWKYMIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTT-LDRAIG 253 (482)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~-~~~~~~ 253 (482)
.................++. ......++++..+...+++....++..+.+..+.+..+..+ .+..
T Consensus 252 -----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 317 (491)
T 4aps_A 252 -----------LLTIVAIAIPVFYFAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-- 317 (491)
T ss_dssp -----------HHHHHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS--
T ss_pred -----------hhhHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC--
Confidence 00000000000000000000 00111234444445666667788888888888766544432 2211
Q ss_pred CCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q 011595 254 SSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIV 333 (482)
Q Consensus 254 ~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
. .+.+.+..++++..++..++.+++.+++.+|. ....+++.+|+++.+++++++.+..... +
T Consensus 318 --~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-- 379 (491)
T 4aps_A 318 --W-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G-- 379 (491)
T ss_dssp --S-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C--
T ss_pred --c-cCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C--
Confidence 1 44778899999999999999999877765552 4667888899999999988877653210 0
Q ss_pred cCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccc
Q 011595 334 EKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413 (482)
Q Consensus 334 ~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~ 413 (482)
.+...+.+++++.+++.++|+.+..|..++++.+..|++.||.++|+++....+|+.+++.+.+.+.+.
T Consensus 380 ---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-------- 448 (491)
T 4aps_A 380 ---TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-------- 448 (491)
T ss_dssp ---CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--------
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 011346678889999999999999999999999999999999999999999999999999998876531
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 011595 414 WILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYK 452 (482)
Q Consensus 414 w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~ 452 (482)
.+...|..++++++++.+++++..++.+++
T Consensus 449 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 449 ---------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp ---------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123456677777788877777776665544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=163.09 Aligned_cols=315 Identities=10% Similarity=0.010 Sum_probs=187.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc-ccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG-WTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g-~~~~F~i 111 (482)
+.+.+++++++.|+|.|...|...+++.|++|++ +|+++++++..+.++|.++||.+++++.+.+| |++.|++
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5667889999999999999999999999999976 68999999999999999999999999888898 9999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
.++..++..++.++..++.++.+...+. . .... .... ..++ ...+...+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~-~~~~---~~~~-----------~~~~~~~~~~ 242 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMRDTPQSCGLPPI-E-------------EYKN-DYPD---DYNE-----------KAEQELTAKQ 242 (451)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------TTCC-C---------------------------CCTH
T ss_pred HHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------hhcc-cccc---cchh-----------hhhccccccc
Confidence 9877666555443333321110000000 0 0000 0000 0000 0000000000
Q ss_pred hhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHH
Q 011595 192 KAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSM 271 (482)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~i 271 (482)
.. + .+....+.+ ..+.+.....+..+....+.++... ....+. -....+.+..+..+..
T Consensus 243 ~~---------~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~-~~~~~~~~~~~~~~~~ 301 (451)
T 1pw4_A 243 IF---------M-----QYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYL---KEVKHF-ALDKSSWAYFLYEYAG 301 (451)
T ss_dssp HH---------H-----HHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHB---TTBSCC-CHHHHHHHHHHHHHHH
T ss_pred ch---------H-----HHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCC-CHHHHHHHHHHHHHHH
Confidence 00 0 000001122 1222222222333222222222221 111220 0011345666777777
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHI-IIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQF 350 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~ 350 (482)
++..++.+++.+++.+ +..+.+.++.++.+ ++++++.+.. ..+.++.....
T Consensus 302 ~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 353 (451)
T 1pw4_A 302 IPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMNP-------------------AGNPTVDMICM 353 (451)
T ss_dssp HHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSCC-------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHhc-------------------ccCHHHHHHHH
Confidence 7777777777554311 22333445554444 5554433210 12445666777
Q ss_pred HHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhH-HHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHH
Q 011595 351 VLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGV-GNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYA 429 (482)
Q Consensus 351 ~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~ 429 (482)
++.+++.....+....++.+..|++.||+++|+.+....+ |..+++.+.+.+.+..+ +...|.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g----------------~~~~~~ 417 (451)
T 1pw4_A 354 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG----------------WDGGFM 417 (451)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----------------SHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------cHHHHH
Confidence 8888888888888899999999999999999999999999 99999999998764221 245566
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 011595 430 FFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 430 ~~~~l~~l~~ll~~~~~~ 447 (482)
+.+++++++.++++...+
T Consensus 418 ~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 418 VMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 667777777766665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-13 Score=137.88 Aligned_cols=265 Identities=11% Similarity=0.047 Sum_probs=163.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh-hccc-------
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ-DNMG------- 104 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~-~~~g------- 104 (482)
+.+.+++++++.|+|.|...|...++++|.+|++ +|+++++++..+.++|.++++.+++++. +..+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 189 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 6788999999999999999999999999999986 5899999999999999999999999998 5544
Q ss_pred ------------------ccchhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCcccc
Q 011595 105 ------------------WTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELY 166 (482)
Q Consensus 105 ------------------~~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~ 166 (482)
|++.|++.++..++..+.+++.+. ++.++++++ .. .
T Consensus 190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~----------------~~---~----- 243 (438)
T 3o7q_A 190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHS----------------DA---K----- 243 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCC----------------CS---S-----
T ss_pred ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccccc----------------cc---c-----
Confidence 899998777655555444433221 111110000 00 0
Q ss_pred ccchhhhhhhccccccCCccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHh-H
Q 011595 167 ELDLEDYAQKWKYMIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQ-G 245 (482)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~-~ 245 (482)
+ ......+.+ +...+.++ ...+....++..+....+.++.. .
T Consensus 244 ---~------------~~~~~~~~~-------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 244 ---Q------------GSFSASLSR-------------------LARIRHWR---WAVLAQFCYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp ---T------------TSHHHHHHH-------------------HTTCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---c------------cchhhhHHH-------------------HHhChHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 000000000 00001111 11112222222222222222211 1
Q ss_pred hhcccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011595 246 TTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLS 325 (482)
Q Consensus 246 ~~~~~~~~~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~ 325 (482)
++ ..+. -....+.+..+..+..++..++.+++.+++ ++.+.+.++.++.+++++++.+..
T Consensus 287 ~~---~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~----- 346 (438)
T 3o7q_A 287 EE---IPGM-TAGFAANYLTGTMVCFFIGRFTGTWLISRF-----------APHKVLAAYALIAMALCLISAFAG----- 346 (438)
T ss_dssp HH---STTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hc---cCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHcC-----
Confidence 11 1120 001134555666667777777777775543 334456677777777766554421
Q ss_pred hhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccc
Q 011595 326 VAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNI 405 (482)
Q Consensus 326 ~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~ 405 (482)
+ .+.+...++.+++.....|...+.+.+..|++ ++..+++.. ...+|+.+++.+.+.+.+.
T Consensus 347 ----------------~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 347 ----------------G-HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp ----------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred ----------------C-cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 1 23344567888999999999999999999987 899998877 6669999999999987753
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=138.70 Aligned_cols=260 Identities=11% Similarity=0.029 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.|++.+...|...+++.|.+|++ +|+++++++..+.++|..++|.+++++.++++|++.|++.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 6778889999999999999999999999999876 5899999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..+..+.. .+++++++++. +.. .
T Consensus 161 ~~~~~~~~~~~~~~---~~~~~~~~~~~-------------~~~---------------------------~-------- 189 (375)
T 2gfp_A 161 LVLCAGVTFSMARW---MPETRPVDAPR-------------TRL---------------------------L-------- 189 (375)
T ss_dssp HHHHHHHHCCCCCS---SCCCSTTTCCC-------------CCT---------------------------T--------
T ss_pred HHHHHHHHHHHHHH---CcccCCCCccc-------------ccH---------------------------H--------
Confidence 76655443322222 22211111000 000 0
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH---HhHhhcccCCCCCeeeCccccchhhHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFV---KQGTTLDRAIGSSFKIPPASLIGFVTL 269 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~---~~~~~~~~~~~~g~~i~~~~~~~in~i 269 (482)
..+ .+....|.+.... +.....+..+....+.++ ....+.+. ...+.+..+..+
T Consensus 190 --------~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~g~~~~~~~~ 246 (375)
T 2gfp_A 190 --------TSY-----KTLFGNSGFNCYL---LMLIGGLAGIAAFEACSGVLMGAVLGLSS-------MTVSILFILPIP 246 (375)
T ss_dssp --------TCS-----THHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSCSSHHHHHHHH-------HHHHHHHHTHHH
T ss_pred --------HHH-----HHHhcCcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHH
Confidence 000 0111222222221 122222222222211111 11011111 012344555566
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHH
Q 011595 270 SMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVI-HIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLP 348 (482)
Q Consensus 270 ~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~ 348 (482)
..++..++.+++ .+|. +. ++..+..+ ..++.......... ..+.+..+.
T Consensus 247 ~~~~~~~~~~~l----~~r~-------~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 296 (375)
T 2gfp_A 247 AAFFGAWFAGRP----NKRF-------ST--LMWQSVICCLLAGLLMWIPDWFG-----------------VMNVWTLLV 296 (375)
T ss_dssp HHHHHHHHHHTT----TTHH-------HH--HHHHHHHHHHHTSSSSSHHHHHH-----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHH-------HH--HHHHHHHHHHHHHHHHHHHhhhc-----------------cccHHHHHH
Confidence 666555555544 3331 11 34444444 22232211111000 114455667
Q ss_pred HHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 349 QFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 349 ~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..++.+++.....|...+.+.+..| +.||+++|+.+....+|..+++.+.+.+.
T Consensus 297 ~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 297 PAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999 89999999999999999999999988765
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-11 Score=123.49 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc--------cc
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN--------MG 104 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~--------~g 104 (482)
+.+.++++|++.|+|.|+..|...++++|..|++ +|++..+++..+..+|.++++.++..+... .+
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 7889999999999999999999999999999976 689999999999999999999888776542 35
Q ss_pred ccchhhhhHHHHHH
Q 011595 105 WTLGYGLPTLGLSI 118 (482)
Q Consensus 105 ~~~~F~i~~i~~~l 118 (482)
|++.+.+..+..++
T Consensus 199 ~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 199 WRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHTTHHHHHH
T ss_pred hHHHhhhhhhhhhh
Confidence 66666655544333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=125.18 Aligned_cols=139 Identities=9% Similarity=0.008 Sum_probs=95.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+.+..++.+..++..++.+++.||+.+| +.+.+|.++.+++++.+.+.
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~--------------------- 309 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA--------------------- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3456667777777777788876655443 33556777777665554321
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHH-HHHHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSY-SMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
.+.++++...++.+++.....+....++.+..|++.||+.+|. ++....+|+.++|.+.+.+.+..
T Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~------------- 376 (417)
T 2cfq_A 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI------------- 376 (417)
T ss_dssp CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-------------
Confidence 1334555555667777767777778899999999999999998 58888899999999998766311
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 011595 420 NVSHLDYYYAFFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 420 ~~~~~~~~f~~~~~l~~l~~ll~~~~~~ 447 (482)
.+...|.+.+++++++.++.+...+
T Consensus 377 ---g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 377 ---GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1344566777777777766555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.9e-07 Score=92.90 Aligned_cols=115 Identities=11% Similarity=0.099 Sum_probs=94.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+..++..|+.+++.|++.+| +.+.+|.++.+++.+++.....
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~------------------ 113 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE------------------ 113 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc------------------
Confidence 35667777888888889999987655444 4578888888888877633210
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+.++++...++.|+|+....+...+++.+..|++.|+.++|+.....++|..+|+.+.+.+.
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256778888999999999999999999999999999999999999999999999999998776
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-07 Score=93.62 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=94.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+...+..|+.+++.|++.+| +-+.+|.++.+++.+++++....
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~----------------- 115 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA----------------- 115 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc-----------------
Confidence 45677788888888889999887655444 45678888888888887762100
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+.++++...++.|+|+....|...+++.+..|++.|+.++|++....++|..+|+.+++.+.
T Consensus 116 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0144677888999999999999999999999999999999999999999999999999998755
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.3e-07 Score=92.16 Aligned_cols=144 Identities=13% Similarity=0.178 Sum_probs=109.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHH-HhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVK-IMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQ 338 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~-~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (482)
.+++.++..+...+..|+.+++.|+ +.+| +-+.+|.++.+++.+++++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------- 105 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh-------------------
Confidence 3567788888888889999999776 4444 34677888888887776542
Q ss_pred ccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchh--hHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCcccccc
Q 011595 339 VPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENM--KSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWIL 416 (482)
Q Consensus 339 ~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~--~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 416 (482)
.+.++++...++.|+|+....|...+++.+..|++. |+.+++.++...++|..+|+.+++.+.+.. +|
T Consensus 106 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~-- 175 (491)
T 4aps_A 106 --FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY-- 175 (491)
T ss_dssp --CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH--
T ss_pred --hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH--
Confidence 245677888899999999999999999999999988 888888899999999999999998876421 12
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011595 417 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 451 (482)
Q Consensus 417 ~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~ 451 (482)
...|.+.+++.+++.++++...++..+
T Consensus 176 --------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 176 --------HVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 344555566666666666655555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.9e-07 Score=90.49 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=92.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+++.++..+...+..|+.+++.|++.+|+ .+.++.++.+++.+...+.+
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~-------------------- 86 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPISDRVGRRP-----------VILVGMSIFMLATLVAVTTS-------------------- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTSCCCC-----------CCHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCch-----------hHHHHHHHHHHHHHHHHHhc--------------------
Confidence 45677788888888889998876554442 23578888888877766542
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.++++...++.+++.....+...+++.+..|++.|+.++|.+....++|..+++.+.+.+.+
T Consensus 87 -~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 87 -SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 556778888999999999999999999999999999999999999999999999999987653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.8e-06 Score=86.03 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=102.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+++.++..+..++..++.+++.|++ .++.+.+.+|.++.+++.+++.+. +
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~----------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~ 106 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRF----------FGKYNTILWLSLIYCVGHAFLAIF--------------------E 106 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTS----------SCSHHHHHHHHHHHHHHHHHHHHT--------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHHHHHHHHh--------------------c
Confidence 4566777777777788888885543 033455677888888887776542 1
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHH---HHHHhhHHHHHhhhhhhhhccccccCCccccccC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSY---SMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILN 417 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~---~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 417 (482)
.+.++++...++.++|+....|...+++.+..|++.||..++. +....++|..+|+.+.+.+.+.. +
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g---- 176 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------G---- 176 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------C----
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c----
Confidence 1456777888999999999999999999999999999877776 88889999999999988765311 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 418 NLNVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 418 ~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
....|.+.+++.+++.++++...++
T Consensus 177 ------~~~~f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 177 ------AAVAFGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2344556666656555555443333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00015 Score=74.82 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=89.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
++.+...+..++..++.+++.|++.|| +-+.++.++..++-+.+++.............. ......
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk-----------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~---~~~~a~ 124 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISGVGSAWPELGFTSINPDNTV---PVYLAG 124 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSC---CGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHH---HHHHhh
Confidence 334445566666777888887766665 335677777777777666432100000000000 000123
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+++.++...+++|+|+....+....++.+.+|++.||..++++.....+|..++..+.....
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 56778888999999999999999999999999999999999999999999999888876654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00093 Score=67.88 Aligned_cols=86 Identities=9% Similarity=-0.066 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHH-HHHHHHHHHHHHhHhHhhhhhcccccchhhhhH
Q 011595 35 GIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNW-WMFSIFFGALFANTVLVYIQDNMGWTLGYGLPT 113 (482)
Q Consensus 35 ~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~-~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~ 113 (482)
+.+.+..++.+++.+...+...+++.|.+|++ .|++++++ +..+.++|.+++|.++|++.+++||+..|.+.+
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 34444444556665555666778889998864 57888888 467778999999999999998889999999888
Q ss_pred HHHHHHHHHHHhc
Q 011595 114 LGLSISIAIFFAG 126 (482)
Q Consensus 114 i~~~l~~i~~~~~ 126 (482)
+..+++.++.+..
T Consensus 387 ~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 387 LVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhh
Confidence 7777776655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.63 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.28 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.84 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.27 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=7.1e-15 Score=148.02 Aligned_cols=313 Identities=10% Similarity=-0.003 Sum_probs=172.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc-ccccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN-MGWTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~-~g~~~~F~i 111 (482)
+.+.+++.+++.+++.|...|...++++|++|++ +|+++++++..+.++|.++++.+++++... .+|++.|++
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~ 188 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 188 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence 5667889999999999999999999999999976 689999999999999999999999886654 479999998
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
.++..++..++.+...+..++....... .. .........+ +
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~---~~~~~~~~~~--------------------~ 229 (447)
T d1pw4a_ 189 PAFCAILVALFAFAMMRDTPQSCGLPPI----------------EE---YKNDYPDDYN--------------------E 229 (447)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTTTCCCSC----------------TT---TCCC---------------------------
T ss_pred hhhhHHHHHHHHHHhcccchhhcccchh----------------hh---hhhhcccchh--------------------h
Confidence 8876665555444333322111000000 00 0000000000 0
Q ss_pred hhhhccCCCCCcccccchhHHHHHHHH---HHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCee-eCccccchhh
Q 011595 192 KAAVKTSSTNPWMLCSVTQVEETKQML---AMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFK-IPPASLIGFV 267 (482)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~v~~~k~~~---~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~-i~~~~~~~in 267 (482)
..+... ...+ ...+..+ .+..+.......+.......+.... .+....+ .. ...+....+.
T Consensus 230 ~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 230 KAEQEL---------TAKQ-IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT---YLKEVKH--FALDKSSWAYFLY 294 (447)
T ss_dssp ---------------CCTH-HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HBTTBSC--CCHHHHHHHHHHH
T ss_pred cccccc---------chhh-HHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhh---hcccccc--cccchhhhhhhcc
Confidence 000000 0000 0011110 0111111112222221111111111 1111112 10 1123455666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHH
Q 011595 268 TLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLL 347 (482)
Q Consensus 268 ~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li 347 (482)
.+..++..++.+++.++..++ .......+...+..++...... ....+.++.+
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 347 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFRG--------NRGATGVFFMTLVTIATIVYWM-------------------NPAGNPTVDM 347 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSTT--------CHHHHHHHHHHHHHHHHHHTTS-------------------CCTTCHHHHH
T ss_pred hhhhhhhhhhhhhhhhhcccc--------ccccccchhHHHHHHHHHHHHh-------------------cccccHHHHH
Confidence 666677777777776555433 1111122222222222211111 1122456666
Q ss_pred HHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhH-HHHHhhhhhhhhccccccCCccccccCCCCcchhHH
Q 011595 348 PQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGV-GNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDY 426 (482)
Q Consensus 348 ~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 426 (482)
...++.+++.....+.....+.+..|++.||+++|+.+....+ |..+++.+.+.+.+..+ ...
T Consensus 348 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g----------------~~~ 411 (447)
T d1pw4a_ 348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG----------------WDG 411 (447)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----------------SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------hHH
Confidence 7778888888888899999999999999999999998887776 56678888887764321 133
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 011595 427 YYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 427 ~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
.|.+++++++++.++.....++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 412 GFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556666666555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=3e-11 Score=118.10 Aligned_cols=139 Identities=10% Similarity=-0.016 Sum_probs=99.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchH
Q 011595 264 IGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTI 343 (482)
Q Consensus 264 ~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~ 343 (482)
.....+..++...+.+++. +| ....+.+.++.++.+++++.+.+. .+.
T Consensus 265 ~~~~~~~~~~~~~~~~~l~----~r-------~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 312 (417)
T d1pv7a_ 265 TTMGELLNASIMFFAPLII----NR-------IGGKNALLLAGTIMSVRIIGSSFA---------------------TSA 312 (417)
T ss_dssp HHHHHHHHHHHHTTHHHHH----HH-------HCHHHHHHHHHHHHHHHHHHHHTC---------------------CCH
T ss_pred ccccccccccchhhhhhhh----cc-------cccccchhhhHHHHHHhhhccccc---------------------ccc
Confidence 3344444444444555553 44 244555677888887777666542 245
Q ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHH-HHHhhHHHHHhhhhhhhhccccccCCccccccCCCCcc
Q 011595 344 FVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYS-MTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNLNVS 422 (482)
Q Consensus 344 ~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~-~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~ 422 (482)
++.+...++.+++..+..+...+++.+..|++.||+.+|+. ++..++|..+++.+.+.+.+..+
T Consensus 313 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g--------------- 377 (417)
T d1pv7a_ 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--------------- 377 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
Confidence 67777889999999999999999999999999999999974 66778999999999988775321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 011595 423 HLDYYYAFFAILNVLNFVFFLVVAKFYV 450 (482)
Q Consensus 423 ~~~~~f~~~~~l~~l~~ll~~~~~~~~~ 450 (482)
+...|++.++++++..++..+..|+-+
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 378 -FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 234567778887777777777665533
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=2.5e-08 Score=98.99 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=94.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+...+..++.+++.|++.+| +.+.+|+++.+++.+++++....
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~----------------- 112 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA----------------- 112 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHhhccccchh-----------------
Confidence 45667888888888889999997765544 45678888888888877664321
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+.++++...++.++++....+....++.+..|++.||.++|++.....+|..+++.+.+...
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 1245677888899999999999999999999999999999999999999999999998887654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00062 Score=64.49 Aligned_cols=117 Identities=11% Similarity=-0.025 Sum_probs=68.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+..++..|+.+++.||+.||+ .+.++..+.+++.+...+....
T Consensus 45 ~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~-----------~l~~~~~~~~~~~~~~~~~~~~----------------- 96 (417)
T d1pv7a_ 45 TGIIFAAISLFSLLFQPLFGLLSDKLGLRK-----------YLLWIITGMLVMFAPFFIFIFG----------------- 96 (417)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTCT-----------HHHHHHHHHHHTHHHHHHHTHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHhhhh-----------------
Confidence 456778888889999999999988776652 2445555565555555443211
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCc--hhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPE--NMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~--~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
.......+....+.+.+................++ +.+....+........+..+++.+++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence 11112223334444444444444444444444433 334445667777777888888888877653
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