Citrus Sinensis ID: 011632

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

cccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEccccccccccEEEEEEccccccccEEEEccccccccHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccEEEEEccccccccEEEccccccccHHHHHHcccccccccccccEEEcccccccHHHHHHHHHHHHccccccEEEEEEEccccccHHcHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

cccEEEccccccccccccccccccccccccccHHcccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHccccccccccEEcccccccccccEEEEEEcccccccEEEEEccccEEcHHHHccccccHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccEEccHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccEEEEEccHHccccccEEEEEEcccccEEEEEEccccccccEEEEEccccccHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

meascslrsskfisppirpphhplsiastisisvirdpnfgsslrlVRRKNRFSirvsssdtlvaGSREVVSKKEEDLGDLkswmhknglppckvilkekpshnekhrpihyvaasedlqagdaafsvpNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKkqgkksfwlpYIRELDrqrgrgqlavespllwsetelayltgsptKAEILERAEGIKREYNELDTVWFMAGSLFQKVSLARRFalvplgppllaYSSKCKAMLAAVDDAVQLVVdrpykagesivvwcgpqpnskllinygfvdednpydRLVVEAAlntedpqyqdKRMVAQRNGKLSVQVFHVHAGrekeaisdmlpylrlgyvsdtsEMQSVIsslgpicpvspcmeRAVLDQLADYFKARlagypatlsedeamltdynlhpkkrVATQLVRMEKKMLNACLQVTADMIMllpdvtvspcpapyaplln

meascslrsskfisppirpphhPLSIASTISISVIRDPNFGSSLRLVRRKNrfsirvsssdtlvagsrevvskkeedlgdlkswmhknglpPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAEllttnklsELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETElayltgsptkaEILERAEGIKREYNELDTVWFMAGSLFQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGEsivvwcgpqpNSKLLINYGFVDEDNPYDRLVVEAALntedpqyqDKRMVAQRNGKLSVQVFHVHAGrekeaisdmlPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTvspcpapyaplln

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQKVSLARRFALVPLGPPLLAYSSKCKamlaavddavqlvvdRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

*************************IASTISISVIRDPNFGSSLRLVRRKNRFSI****************************WMHKNGLPPCKVIL************IHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNT**********VAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCP********

********SSKFIS******************************************************************LKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDE*******LHPKKRVATQLVRMEKKMLNACLQVTADM******************L**

*********SKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

**ASCSLRSSKFISPPIRPPHHPLSIASTISIS*IRD****S***LVRRKNRFSIRVSSS************KKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPY*****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		481	2.2.26 [Sep-21-2011]
B7ZUF3		582	Histone-lysine N-methyltr	yes	no	0.798	0.659	0.220	4e-16
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.769	0.622	0.223	2e-15
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.771	0.623	0.222	6e-15
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.769	0.621	0.227	8e-15
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.771	0.623	0.227	1e-14
C1FXW2		589	Histone-lysine N-methyltr	N/A	no	0.769	0.628	0.227	1e-14
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.771	0.624	0.227	1e-14
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.771	0.623	0.227	2e-14
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.771	0.630	0.224	1e-13
Q91WC0		594	Histone-lysine N-methyltr	yes	no	0.771	0.624	0.222	7e-13

>sp\|B7ZUF3\|SETD3_XENTR Histone-lysine N-methyltransferase setd3 OS=Xenopus tropicalis GN=setd3 PE=2 SV=1	Back alignment and function desciption

 Score = 86.7 bits (213), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/448 (22%), Positives = 190/448 (42%), Gaps = 64/448 (14%)

Query: 72  SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131
            K+E+   +L  W  +NG       L E P           + A+ +++A +    VP  
Sbjct: 73  GKREDYFPELMEWCKENGASTDGFELVEFPEEG------FGLKATREIKAEELFLWVPRK 126

Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188
           L++T+E   G+  +  L + +++ +      LA +L+ E+     SFWLPYI+ L  +  
Sbjct: 127 LLMTVESAKGS-VLGPLYSQDRILQAMGNITLAFHLLCERAD-PNSFWLPYIKTLPNE-- 182

Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREY-------------NEL---- 231
                 ++PL ++E E+ YL  +    ++  + +   R+Y             N+L    
Sbjct: 183 -----YDTPLYFNEDEVQYLQSTQAILDVFSQYKNTARQYAYFYKVIQTHPNANKLPLKD 237

Query: 232 -----DTVWFMAGSLFQKVSLARR------FALVPLGPPLLAYSSKCKAMLAAVDDAVQL 280
                D  W ++  + ++  +          AL+PL       +          DD  + 
Sbjct: 238 SFTFDDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCEC 297

Query: 281 VVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVA 340
           V  + +K+GE I ++ G + N++ +I+ GF  E+N +DR+ ++  ++  D  Y  K  V 
Sbjct: 298 VALQDFKSGEQIYIFYGTRSNAEFVIHNGFFFENNLHDRVKIKLGVSKSDRLYAMKAEVL 357

Query: 341 QRNGKLSVQVFHVHAGREKEAISDMLPYLRL---------GYVSDTSEMQSVISSLGPIC 391
            R G  +  VF +H   E    + +L +LR+         G++     +  + +      
Sbjct: 358 ARAGIPTSSVFALHV-TEPPISAQLLAFLRVFCMNEDELKGHLIGDHAIDKIFTLGNSEF 416

Query: 392 PVSPCMERAVLDQLADYFKAR----LAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEK 447
           PVS   E  +  +L  + +AR    L  Y  T+ +D  +L   ++     +A +L R+EK
Sbjct: 417 PVS--WENEI--KLWTFLEARASLLLKTYKTTVEDDNKVLEQPDMTFHSAMAIKLRRVEK 472

Query: 448 KMLNACLQVTADMIMLLPDVTVSPCPAP 475
           ++L   L+  +D   L    +    P P
Sbjct: 473 EILEKALKSASDNRKLYSKNSEEGTPLP 500

Histone methyltransferase that methylates 'Lys-36' of histone H3 (H3K36me). H3 'Lys-36' methylation represents a specific tag for epigenetic transcriptional activation.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|C1FXW2\|SETD3_DASNO Histone-lysine N-methyltransferase setd3 OS=Dasypus novemcinctus GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q91WC0\|SETD3_MOUSE Histone-lysine N-methyltransferase setd3 OS=Mus musculus GN=Setd3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		481
225452167		509	PREDICTED: histone-lysine N-methyltransf	0.881	0.833	0.794	0.0
449455876		521	PREDICTED: histone-lysine N-methyltransf	0.952	0.879	0.749	0.0
359488614		515	PREDICTED: histone-lysine N-methyltransf	0.881	0.823	0.784	0.0
224117488		502	SET domain protein [Populus trichocarpa]	0.964	0.924	0.727	0.0
296090251		428	unnamed protein product [Vitis vinifera]	0.823	0.925	0.812	0.0
357497055		501	SET domain protein [Medicago truncatula]	0.920	0.884	0.728	0.0
22326803		514	Rubisco methyltransferase family protein	0.983	0.920	0.694	0.0
18377718		514	unknown protein [Arabidopsis thaliana]	0.983	0.920	0.692	0.0
297807453		516	SET domain-containing protein [Arabidops	0.989	0.922	0.685	0.0
356571407		502	PREDICTED: probable ribulose-1,5 bisphos	0.833	0.798	0.770	0.0

>gi\|225452167\|ref\|XP_002264334.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/462 (79%), Positives = 393/462 (85%), Gaps = 38/462 (8%)

Query: 58  SSSDTLVAGSR-------EVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPI 110
           S SDTLVAGSR       E   KKE++ GDLKSWMH+NGLPPCKV+LKE+PSH+E+H+ I
Sbjct: 48  SGSDTLVAGSRKEDGRVSEAARKKEDEFGDLKSWMHENGLPPCKVVLKERPSHHEQHKAI 107

Query: 111 HYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQ 170
           HY+AASEDLQAGD AFSVP+SLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQ
Sbjct: 108 HYIAASEDLQAGDVAFSVPDSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQ 167

Query: 171 GKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNE 230
           GKKSFW PYIRELDRQRGRGQLAVESPLLWSE+ELAYLTGSPTKAE+LERAEGIKREYNE
Sbjct: 168 GKKSFWYPYIRELDRQRGRGQLAVESPLLWSESELAYLTGSPTKAEVLERAEGIKREYNE 227

Query: 231 LDTVWFMAGSLFQ-------------------------------KVSLARRFALVPLGPP 259
           LDTVWFMAGSLFQ                               KVSLARRFALVPLGPP
Sbjct: 228 LDTVWFMAGSLFQQYPYDIPTEAFPFEIFKQAFVAIQSCVVHLQKVSLARRFALVPLGPP 287

Query: 260 LLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDR 319
           LLAY S CKAMLAAVD +VQLVVDRPYKAGESIVVWCGPQPNSKLL+NYGFVDEDN YDR
Sbjct: 288 LLAYRSNCKAMLAAVDGSVQLVVDRPYKAGESIVVWCGPQPNSKLLLNYGFVDEDNSYDR 347

Query: 320 LVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSE 379
           +VVEAALNTEDPQYQDKRMVAQRNGKL+VQ FHV  G+E+EA+SDMLPYLRLGYVSD SE
Sbjct: 348 IVVEAALNTEDPQYQDKRMVAQRNGKLTVQKFHVSVGKEREAVSDMLPYLRLGYVSDPSE 407

Query: 380 MQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVA 439
           MQSVISS GPICPVSPCMERAVLDQL DYF+ RLAGYP T+SEDE +L D NL+PKK VA
Sbjct: 408 MQSVISSQGPICPVSPCMERAVLDQLVDYFERRLAGYPTTMSEDECLLADSNLNPKKLVA 467

Query: 440 TQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN 481
           TQLVR+EKKMLNACL+ T D+I  LPD TVSPCPAPY PLL 
Sbjct: 468 TQLVRLEKKMLNACLKATVDLINQLPDHTVSPCPAPYTPLLK 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449455876\|ref\|XP_004145676.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus] gi\|449492872\|ref\|XP_004159127.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359488614\|ref\|XP_003633789.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224117488\|ref\|XP_002331687.1\| SET domain protein [Populus trichocarpa] gi\|222874165\|gb\|EEF11296.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296090251\|emb\|CBI40070.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357497055\|ref\|XP_003618816.1\| SET domain protein [Medicago truncatula] gi\|355493831\|gb\|AES75034.1\| SET domain protein [Medicago truncatula]	Back alignment and taxonomy information

>gi|22326803|ref|NP_196930.2| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|30684815|ref|NP_851038.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|42573363|ref|NP_974778.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|17473570|gb|AAL38260.1| putative protein [Arabidopsis thaliana] gi|23297671|gb|AAN13005.1| unknown protein [Arabidopsis thaliana] gi|332004624|gb|AED92007.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004625|gb|AED92008.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004626|gb|AED92009.1| Rubisco methyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|18377718\|gb\|AAL67009.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297807453\|ref\|XP_002871610.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297317447\|gb\|EFH47869.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356571407\|ref\|XP_003553868.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 1 [Glycine max] gi\|356571409\|ref\|XP_003553869.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 2 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		481
TAIR\|locus:2145663		514	AT5G14260 "AT5G14260" [Arabido	0.494	0.463	0.714	3.1e-177
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.471	0.450	0.252	1.3e-16
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.357	0.289	0.252	1.1e-13
UNIPROTKB\|B7ZUF3		582	setd3 "Histone-lysine N-methyl	0.382	0.316	0.259	1.9e-13
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.357	0.289	0.252	2.3e-13
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.357	0.289	0.252	2.3e-13
UNIPROTKB\|F6R2J7		594	SETD3 "Uncharacterized protein	0.357	0.289	0.252	2.9e-13
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.357	0.289	0.252	3e-13
UNIPROTKB\|F1SAQ4		595	SETD3 "Uncharacterized protein	0.361	0.292	0.255	3.6e-13
UNIPROTKB\|C1FXW2		589	SETD3 "Histone-lysine N-methyl	0.357	0.292	0.252	6e-13

TAIR\|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 912 (326.1 bits), Expect = 3.1e-177, Sum P(2) = 3.1e-177
 Identities = 170/238 (71%), Positives = 194/238 (81%)

Query:   243 QKVSLARRFALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVWCGPQPNS 302
             Q V LARRFALVPLGPPLLAY S CK               RPYKAG+ IVVWCGPQPN+
Sbjct:   276 QNVGLARRFALVPLGPPLLAYCSNCKAMLTAVDGAVELVVDRPYKAGDPIVVWCGPQPNA 335

Query:   303 KLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAI 362
             KLL+NYGFVDEDNPYDR++VEAALNTEDPQYQDKRMVAQRNGKLS QVF V  G+E+EA+
Sbjct:   336 KLLLNYGFVDEDNPYDRVIVEAALNTEDPQYQDKRMVAQRNGKLSQQVFQVRVGKEREAV 395

Query:   363 SDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSE 422
              DMLPYLRLGY+SD SEMQSVISS GP+CP+SPCMERAVLDQLA+YF  RL+GYP T  E
Sbjct:   396 QDMLPYLRLGYMSDPSEMQSVISSQGPVCPMSPCMERAVLDQLANYFMRRLSGYPTTPKE 455

Query:   423 DEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLL 480
             D+A+L D +L P+KRVAT+LV++EKK+L ACL  T D++  LPD  +SPCPAPYAP L
Sbjct:   456 DDALLADPSLSPRKRVATRLVQLEKKILVACLTTTVDLLNQLPDTAISPCPAPYAPSL 513

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|B7ZUF3 setd3 "Histone-lysine N-methyltransferase setd3" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|C1FXW2 SETD3 "Histone-lysine N-methyltransferase setd3" [Dasypus novemcinctus (taxid:9361)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		481
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	2e-27

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

 Score =  106 bits (266), Expect = 2e-27
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 326 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVIS 385
           L+  DP Y+DK  + +RNG L    F +          ++L YLRL  +SD         
Sbjct: 1   LSPSDPLYEDKLQLLERNGLLENGNFTLGIDGPPSW--ELLAYLRLLCLSDEELTAWKSV 58

Query: 386 SLGPIC-----PVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVAT 440
            LG +      P+SP  E   L  L    K  L+ YP TL EDEA+L   NL  + R+A 
Sbjct: 59  LLGAVIGHKEAPLSPENEEKALQFLEKLCKLLLSEYPTTLEEDEALLKKGNLSEQLRLAV 118

Query: 441 QLVRMEKKML 450
           +L   EK++L
Sbjct: 119 RLRLGEKRIL 128

Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		481
KOG1337		472	consensus N-methyltransferase [General function pr	99.97
KOG1338		466	consensus Uncharacterized conserved protein [Funct	99.96
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.79
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.42
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	97.3
KOG2589		453	consensus Histone tail methylase [Chromatin struct	91.7
KOG1085		392	consensus Predicted methyltransferase (contains a	89.83
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	83.92

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=99.97  E-value=1.4e-29  Score=270.09  Aligned_cols=365  Identities=33%  Similarity=0.432  Sum_probs=272.7

Q ss_pred             cccccchhHHHHHHHhCCCCCCCcEEeecCCCCCCCCCeeEEEEccCCCCCCeEEEcCccCccChhcccCcchHHhhhcc
Q 011632           72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTT  151 (481)
Q Consensus        72 ~~~~~~~~~f~~Wl~~~G~~~~~v~i~~~~~~~~~GrG~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~~~~~~~ll~~  151 (481)
                      ....+..+.+..|.+.+|....+..+ ....  -.+   +++.+..++..++.+..+|....+..+.....         
T Consensus        43 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  107 (472)
T KOG1337|consen   43 IASSENIKSLKFWLTGNGLSSSKSSL-PGND--IDE---WPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYN---------  107 (472)
T ss_pred             CCCccccccceeccccCCcchhhhcc-cccc--ccc---cchhhhhhhhhhhhhccCCchhhhccccccCc---------
Confidence            34556777888888888887654333 1111  112   24666677777776666666665554443221         


Q ss_pred             CCCChh-HHHHHHHHHHhhcCCCCCchhhHHhcccccCCCccccccCcccCHhHHhhccCCCcHHHHHHHHHHHHHHHHH
Q 011632          152 NKLSEL-ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNE  230 (481)
Q Consensus       152 ~~l~~~-~~Lal~Ll~Er~~g~~S~w~pYi~~LP~~~~~g~l~~~~Pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~y~~  230 (481)
                         +.. ..+++++++|...+..|.|+||+..||.       .+++|++|..+++..|.+++....+..+...++..|.+
T Consensus       108 ---~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~  177 (472)
T KOG1337|consen  108 ---DLLPIALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAE  177 (472)
T ss_pred             ---cccHHHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHH
Confidence               122 7899999999998888999999999999       57999999999999999999999999988888775544


Q ss_pred             HHHH----------------------Hhhcc---cccccccc--------cCceeEeeecccccCCCCCC-ceeEEeeCC
Q 011632          231 LDTV----------------------WFMAG---SLFQKVSL--------ARRFALVPLGPPLLAYSSKC-KAMLAAVDD  276 (481)
Q Consensus       231 l~~~----------------------w~~a~---s~f~~v~~--------~~~~~LvPl~Dml~NH~~~~-~~~~~~~~~  276 (481)
                      +...                      |.++.   ..|.....        ....+|+|++|| .||++.. ...++..++
T Consensus       178 ~~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~-~NH~~~~~~~~~~~~d~  256 (472)
T KOG1337|consen  178 LLEVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDL-LNHSPEVIKAGYNQEDE  256 (472)
T ss_pred             HHHHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHh-hccCchhccccccCCCC
Confidence            4322                      22210   00111111        235799999996 5899876 455667777


Q ss_pred             eEEEEEcccCCCCCeEEeccCCCChHHHHHhcCccCCCCCCCeEEEEEecCCCCcChHHHHHHHHHCCCcceeEEEEEcC
Q 011632          277 AVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAG  356 (481)
Q Consensus       277 ~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~D~v~l~l~l~~~d~~~~~K~~lL~~~g~~~~~~f~l~~~  356 (481)
                      .+.+++.++|++||||||+||+++|++||++||||.++||+|.|.+.+.++..|+.+..|.+.+.+++......|.+...
T Consensus       257 ~~~l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (472)
T KOG1337|consen  257 AVELVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLT  336 (472)
T ss_pred             cEEEEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888888887766


Q ss_pred             CccchhhhhhHHHHhhcC---CChHHHHHHHh-------hcCCCCCCChHhHHHHHHHHHHH-HHHHHhcCCCChHHHHH
Q 011632          357 REKEAISDMLPYLRLGYV---SDTSEMQSVIS-------SLGPICPVSPCMERAVLDQLADY-FKARLAGYPATLSEDEA  425 (481)
Q Consensus       357 ~~~~~~~~Ll~~lRl~~~---s~~~el~~~~~-------~~~~~~~~s~~nE~~vl~~L~~~-l~~~L~~y~TT~eeDe~  425 (481)
                      +...  .+++...++..+   ....++....+       .....++++..+|..++..+... +...+..+.+++++|+.
T Consensus       337 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~  414 (472)
T KOG1337|consen  337 GEPV--SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDES  414 (472)
T ss_pred             CCch--hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhh
Confidence            5432  233333332222   11212222221       11235677889999999999888 88888899999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011632          426 MLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLL  464 (481)
Q Consensus       426 ~L~~~~~~~r~~~A~~~R~~EK~IL~~~l~~l~~~~~~l  464 (481)
                      .+.+..++.+..++..++..+|+||.+.+..+..+...+
T Consensus       415 vl~~~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l  453 (472)
T KOG1337|consen  415 VLKDNILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLL  453 (472)
T ss_pred             hhcccccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhc
Confidence            998887888999999999999999999999998544443

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		481
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		3e-14
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		6e-06
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		6e-06

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

Iteration: 1

Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 92/426 (21%), Positives = 177/426 (41%), Gaps = 56/426 (13%) Query: 73 KKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSL 132 K+E+ DL W +NG V E + E+ + A+ D++A + VP L Sbjct: 73 KREDYFPDLXKWASENG---ASVEGFEXVNFKEEGFGLR---ATRDIKAEELFLWVPRKL 126 Query: 133 VVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRGR 189 + T+E N + L + +++ + LA +L+ E+ SFW PYI+ L + Sbjct: 127 LXTVESA-KNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSFWQPYIQTLPSE--- 181 Query: 190 GQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREY-------------NEL----- 231 ++PL + E E+ YL + ++ + + R+Y N+L Sbjct: 182 ----YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDS 237 Query: 232 ----DTVWFMAGSLFQKVSLARR------FALVPLGPPLLAYSSKCKXXXXXXXXXXXXX 281 D W ++ ++ + AL+PL + Sbjct: 238 FTYEDYRWAVSSVXTRQNQIPTEDGSRVTLALIPLWDXCNHTNGLITTGYNLEDDRCECV 297 Query: 282 XXRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQ 341 + ++AGE I ++ G + N++ +I+ GF ++N +DR+ ++ ++ D Y K V Sbjct: 298 ALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAXKAEVLA 357 Query: 342 RNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSD---------TSEMQSVISSLGPICP 392 R G + VF +H E + +L +LR+ ++ S + + + P Sbjct: 358 RAGIPTSSVFALHF-TEPPISAQLLAFLRVFCXTEEELKEHLLGDSAIDRIFTLGNSEFP 416 Query: 393 VSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNA 452 VS E + L D L Y T+ ED+++L +++L + + A +L EK++L Sbjct: 417 VSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKXAIKLRLGEKEILEK 476 Query: 453 CLQVTA 458 ++ A Sbjct: 477 AVKSAA 482

PyMOL of 3smt

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		481
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	4e-69
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	2e-65
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	1e-48
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

 Score =  228 bits (581), Expect = 4e-69
 Identities = 90/435 (20%), Positives = 175/435 (40%), Gaps = 56/435 (12%)

Query: 67  SREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAF 126
           S     K+E+   DL  W  +NG       +               + A+ D++A +   
Sbjct: 67  SVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEG------FGLRATRDIKAEELFL 120

Query: 127 SVPNSLVVTLERVLGNETIAELLTTNKLSEL---ACLALYLMYEKKQGKKSFWLPYIREL 183
            VP  L++T+E    N  +  L + +++ +      LA +L+ E+     SFW PYI+ L
Sbjct: 121 WVPRKLLMTVESAK-NSVLGPLYSQDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTL 178

Query: 184 DRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQ 243
             +        ++PL + E E+ YL  +    ++  + +   R+Y     V        +
Sbjct: 179 PSE-------YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANK 231

Query: 244 K----------------VSLARRF------------ALVPLGPPLLAYSSKCKAMLAAVD 275
                              + R+             AL+PL       +          D
Sbjct: 232 LPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLED 291

Query: 276 DAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQD 335
           D  + V  + ++AGE I ++ G + N++ +I+ GF  ++N +DR+ ++  ++  D  Y  
Sbjct: 292 DRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAM 351

Query: 336 KRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSD---------TSEMQSVISS 386
           K  V  R G  +  VF +H        + +L +LR+  +++          S +  + + 
Sbjct: 352 KAEVLARAGIPTSSVFALHFTEP-PISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTL 410

Query: 387 LGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRME 446
                PVS   E  +   L D     L  Y  T+ ED+++L +++L  + ++A +L   E
Sbjct: 411 GNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGE 470

Query: 447 KKMLNACLQVTADMI 461
           K++L   ++  A   
Sbjct: 471 KEILEKAVKSAAVNR 485

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		481
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	98.74
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	98.6
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	98.49
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	97.13
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	96.21
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	95.94
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	95.83
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	95.75
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	95.01
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	94.55
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	94.51
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	94.51
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	93.75
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	93.63
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	93.34
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	93.15
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	93.09
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	92.6
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	92.58
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	92.54
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	92.19
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	90.76
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	88.46
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	85.66
3ray_A		237	PR domain-containing protein 11; structural genomi	82.8
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	81.34

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=4.8e-63  Score=527.67  Aligned_cols=374  Identities=24%  Similarity=0.346  Sum_probs=316.7

Q ss_pred             ccccccchhHHHHHHHhCCCCCCCcEEeecCCCCCCCCCeeEEEEccCCCCCCeEEEcCccCccChhcccCcchHHhhhc
Q 011632           71 VSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLT  150 (481)
Q Consensus        71 ~~~~~~~~~~f~~Wl~~~G~~~~~v~i~~~~~~~~~GrG~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~~~~~~~ll~  150 (481)
                      ++.+.+.+.+|++|+++||+.+++|+|+.+++   .|+   |++|+++|++||+|++||.+++||.+++..+ .++.++.
T Consensus        71 ~~~r~~~~~~ll~W~~~~G~~~~~v~i~~~~~---~Gr---Gl~A~~dI~~ge~ll~IP~~lllt~~~a~~s-~l~~~~~  143 (497)
T 3smt_A           71 DGKREDYFPDLMKWASENGASVEGFEMVNFKE---EGF---GLRATRDIKAEELFLWVPRKLLMTVESAKNS-VLGPLYS  143 (497)
T ss_dssp             SSCGGGGHHHHHHHHHHTTCCCTTEEEEEETT---TEE---EEEESSCBCTTCEEEEEEGGGCEEHHHHHTS-TTHHHHH
T ss_pred             ccccHHHHHHHHHHHHHCCCCccceEEEEcCC---Ccc---EEEEcccCCCCCEEEEcCHHHhCcHHhhhhh-hcccccc
Confidence            45677889999999999999999999998853   354   7999999999999999999999999988753 3555543


Q ss_pred             cCC---CChhHHHHHHHHHHhhcCCCCCchhhHHhcccccCCCccccccCcccCHhHHhhccCCCcHHHHHHHHHHHHHH
Q 011632          151 TNK---LSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKRE  227 (481)
Q Consensus       151 ~~~---l~~~~~Lal~Ll~Er~~g~~S~w~pYi~~LP~~~~~g~l~~~~Pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~  227 (481)
                      ...   ...+..|+++|++|+. |+.|+|+|||++||+       .+++|++|+++|+++|+||++...+.++.+.+.++
T Consensus       144 ~~~~l~~~~~~~Lal~Ll~E~~-~~~S~w~pYl~~LP~-------~~~~pl~w~~eel~~L~gt~l~~~v~~~~~~~~~~  215 (497)
T 3smt_A          144 QDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTLPS-------EYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQ  215 (497)
T ss_dssp             HCHHHHHCHHHHHHHHHHHHHT-CTTCTTHHHHTTSCS-------CCCSGGGCCHHHHHTTSSSSHHHHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHhc-CCCCchHHHHHhCCC-------CCCCCCcCCHHHHhhccCCcHHHHHHHHHHHHHHH
Confidence            221   1256789999999996 899999999999999       58999999999999999999999998888888888


Q ss_pred             HHHHHHHH--------------------hhcccccc--cc--ccc----CceeEeeecccccCCCCCC-ceeEEeeCCeE
Q 011632          228 YNELDTVW--------------------FMAGSLFQ--KV--SLA----RRFALVPLGPPLLAYSSKC-KAMLAAVDDAV  278 (481)
Q Consensus       228 y~~l~~~w--------------------~~a~s~f~--~v--~~~----~~~~LvPl~Dml~NH~~~~-~~~~~~~~~~~  278 (481)
                      |..+...+                    .|+.++..  ++  ...    ...+|||++||+ ||+... ++.|+.+++.+
T Consensus       216 ~~~~~~~~~~~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~-NH~~~~~~~~~~~~~~~~  294 (497)
T 3smt_A          216 YAYFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMC-NHTNGLITTGYNLEDDRC  294 (497)
T ss_dssp             HHHHHHHC----CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGC-EECSCSEEEEEETTTTEE
T ss_pred             HHHHHHHHHhCcccccCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhh-cCCCcccceeeeccCCeE
Confidence            87654321                    11111110  11  111    147999999975 677654 57788888999


Q ss_pred             EEEEcccCCCCCeEEeccCCCChHHHHHhcCccCCCCCCCeEEEEEecCCCCcChHHHHHHHHHCCCcceeEEEEEcCCc
Q 011632          279 QLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGRE  358 (481)
Q Consensus       279 ~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~D~v~l~l~l~~~d~~~~~K~~lL~~~g~~~~~~f~l~~~~~  358 (481)
                      ++++.++|++||||||+||+++|++||++|||+.++||+|.|.|++.++.+|+++..|.++|+.+|+.....|.+..++.
T Consensus       295 ~~~a~~~i~~Geei~isYG~~~n~~Ll~~YGFv~~~Np~D~v~l~l~~~~~d~l~~~K~~~L~~~gl~~~~~f~l~~~~~  374 (497)
T 3smt_A          295 ECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEP  374 (497)
T ss_dssp             EEEESSCBCTTCEEEECCCSCCHHHHHHHHSCCCTTCTTCEEEEEEECCTTSTTHHHHHHHHHHTTCCSEEEEEEESSSS
T ss_pred             EEEeCCccCCCCEEEEeCCCCChHHHHHHCCCCCCCCCCceEEEEecCCCcchhHHHHHHHHHHcCCCccceeeeecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888899876543


Q ss_pred             cchhhhhhHHHHhhcCCChHHHHHHHhhc----------CCCCCCChHhHHHHHHHHHHHHHHHHhcCCCChHHHHHhhc
Q 011632          359 KEAISDMLPYLRLGYVSDTSEMQSVISSL----------GPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLT  428 (481)
Q Consensus       359 ~~~~~~Ll~~lRl~~~s~~~el~~~~~~~----------~~~~~~s~~nE~~vl~~L~~~l~~~L~~y~TT~eeDe~~L~  428 (481)
                       +++.+|+++||+++++ ++|+..+....          ...+|+|.+||.+++++|...|..+|+.|+||++||+++|+
T Consensus       375 -~~~~~Ll~~LRvl~~~-~~el~~~~~~~~~~~~~~~l~~~~~piS~~nE~~v~~~L~~~~~~~L~~Y~TtieeDe~lL~  452 (497)
T 3smt_A          375 -PISAQLLAFLRVFCMT-EEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLK  452 (497)
T ss_dssp             -CSCHHHHHHHHHHTCC-HHHHHHHHHTCSSSCTTTTTTCTTSCSCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHTT
T ss_pred             -CCCHHHHHHHHHHhCC-HHHHHHHhcccchhhhhhhcccccCCCChhhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHh
Confidence             4789999999999995 67888775432          12468999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011632          429 DYNLHPKKRVATQLVRMEKKMLNACLQVTADMIM  462 (481)
Q Consensus       429 ~~~~~~r~~~A~~~R~~EK~IL~~~l~~l~~~~~  462 (481)
                      +..++.|+++|+++|+|||+||+++++.++....
T Consensus       453 ~~~ls~r~r~Av~vR~gEK~IL~~~l~~~~~~~~  486 (497)
T 3smt_A          453 NHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNRE  486 (497)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999977665

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		481
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	1e-28
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	2e-27

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  111 bits (279), Expect = 1e-28
 Identities = 52/271 (19%), Positives = 93/271 (34%), Gaps = 49/271 (18%)

Query: 80  DLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERV 139
               W+ + G+   K  +K              + A +D+   D    VP  L +  + V
Sbjct: 7   TFWKWLQEEGVITAKTPVKASVVTEGLG-----LVALKDISRNDVILQVPKRLWINPDAV 61

Query: 140 LGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLL 199
             +E        ++L     + L+L+ E+   + S W  Y   L ++        +S + 
Sbjct: 62  AASEIGRVC---SELKPWLSVILFLIRERS-REDSVWKHYFGILPQE-------TDSTIY 110

Query: 200 WSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQK-------------VS 246
           WSE EL  L GS      +   E +K E  +L+    +                    + 
Sbjct: 111 WSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGIL 170

Query: 247 LARRFALVPLGPP------------------LLAYSSKCKAMLAAVDDAVQLVVDRPYKA 288
            +R F+ +                         AY  K  A L + D    L      KA
Sbjct: 171 RSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKA 230

Query: 289 GESIVVWCGPQ-PNSKLLINYGFVDED-NPY 317
           GE + +       N++L ++YGF++ + N +
Sbjct: 231 GEQVYIQYDLNKSNAELALDYGFIEPNENRH 261

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		481
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	99.86
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	97.32
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	96.48
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	94.02
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	93.87
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	83.04

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=1e-36  Score=295.27  Aligned_cols=225  Identities=22%  Similarity=0.346  Sum_probs=178.9

Q ss_pred             cchhHHHHHHHhCCCCCCCcEEeecCCCCCCCCCeeEEEEccCCCCCCeEEEcCccCccChhcccCcchHHhhhccCCCC
Q 011632           76 EDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLS  155 (481)
Q Consensus        76 ~~~~~f~~Wl~~~G~~~~~v~i~~~~~~~~~GrG~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~~~~~~~ll~~~~l~  155 (481)
                      ++++.|++|++++|+..+++.+.....  +.|   |||+|++||++||+|++||..++||.+++..+ .++..+.  ...
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~--~~G---rGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~-~~~~~~~--~~~   74 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVV--TEG---LGLVALKDISRNDVILQVPKRLWINPDAVAAS-EIGRVCS--ELK   74 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEE--TTE---EEEECSSCCCTTCEEEEEEGGGCCSHHHHHTS-GGGTTTT--TSC
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCC--Cce---eEEEECCcCCCCCEEEEeChHHhccHHHhhhh-HHHHHHh--hcC
Confidence            467889999999999998888766432  334   47999999999999999999999999987664 3444433  456


Q ss_pred             hhHHHHHHHHHHhhcCCCCCchhhHHhcccccCCCccccccCcccCHhHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 011632          156 ELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVW  235 (481)
Q Consensus       156 ~~~~Lal~Ll~Er~~g~~S~w~pYi~~LP~~~~~g~l~~~~Pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~y~~l~~~w  235 (481)
                      ++..++++|++|+. +..|.|+||+++||+       .+++|++|+.++++.|+++.+...+....+.++++|.++...+
T Consensus        75 ~~~~l~~~l~~e~~-~~~s~~~~y~~~lp~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (261)
T d2h2ja2          75 PWLSVILFLIRERS-REDSVWKHYFGILPQ-------ETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEI  146 (261)
T ss_dssp             HHHHHHHHHHHHHH-CTTCTTHHHHTTSCS-------CCSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHh-CCCCchhhhhhcccc-------ccCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999996 899999999999999       5789999999999999999999999999999999998865432


Q ss_pred             h-----------------hcccccc--cc--cccCceeEeeecccccCCCCCCceeE-----------EeeCCeEEEEEc
Q 011632          236 F-----------------MAGSLFQ--KV--SLARRFALVPLGPPLLAYSSKCKAML-----------AAVDDAVQLVVD  283 (481)
Q Consensus       236 ~-----------------~a~s~f~--~v--~~~~~~~LvPl~Dml~NH~~~~~~~~-----------~~~~~~~~l~a~  283 (481)
                      .                 |+.+.+.  .+  ......+|+|++||+ ||+...++.+           ...++.++++|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~a~~~v~sr~~~~~~~~~~~l~P~~d~~-NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~  225 (261)
T d2h2ja2         147 ILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLI-NHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSP  225 (261)
T ss_dssp             TTTTTTTCCSCCCHHHHHHHHHHHHHHSBCCC---CCBCCTTGGGC-EECSSCCSCCCCCC-----------CEEEEECS
T ss_pred             HhhhhhhccCccCHHHHHHHHHHhhcccccccccccccchhhhHHh-hcCCCCCcccccccccCcccccCCCcEEEEEEC
Confidence            1                 1111111  11  123467999999975 7887666533           224568999999


Q ss_pred             ccCCCCCeEEeccCC-CChHHHHHhcCccCCC-CCC
Q 011632          284 RPYKAGESIVVWCGP-QPNSKLLINYGFVDED-NPY  317 (481)
Q Consensus       284 r~i~~GeEv~isYG~-~sN~~LLl~YGFv~~~-Np~  317 (481)
                      |+|++||||||+||+ ++|++||.+||||+++ |||
T Consensus       226 r~I~~GEEI~isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         226 LSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             SCCCTTSBCEECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             CCCCCCCEEEEecCCCCCHHHHHHhCCCCCCCCCCC
Confidence            999999999999995 7999999999999876 987

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure