Citrus Sinensis ID: 011639

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

MAISVPLHQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccEEccccEEEccccEEEEEEcccccccccccEEEEccccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEcccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEccccccccEEEEccccccccHHHHHHcccccccccccEEEEccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccccccEcccccccccccccccccccccccccccccccEEccccccccccccHccccccccccccccccccHHHHHHHHHcccccccEEEEccccccEEEEEccccccccccEEEEEccHcEEEccccccccccccEEEcccHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHccccccccccEEccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccEEHHHHHHHcccccccEEEEEEcccccEEEEEEEccccccccEEEEEcccccccHHHHHHcccEcccccccEEEEccccHHHHHHHHHHHHHccccccHEEEcEcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

maisvplhqltysffsnpqgqwkwcakpsysfsnnsQNNIRAIKasvetppfplfqnpkleetpadglepadpdfykigyVRSMRAYgvefkegpdgfgvfaskdiepRRRARLVMQIPLELMLTIRqklpwmffpdivplghpifdiinstdpetdWDLRLACLLLYAFDQDDNFWQLygdflpnadeCTSLLLATEEDlmelqdpnlASTMREQQKRAREFWEknwhsgvplkikrlahdpeRFIWAVSIAQSRCINMQVRIGALvqdanmlipyadmlnhsfqpncffhWRFKDRMLEVMVNAGqhvrrgeeMTVNYMHGQMNDMlmqrygfsspvnpwnviqfsgdariHLDSFLSVfnisglpeeyyhnskissdeesfIDGAVIAAArtlptwsdgdvplvpsIERKAVKELQEECRQMLaefpttskqdQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

maisvplhQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEetpadglepadPDFYKIGYVRSMRAYGVefkegpdgfgvfaskdieprrRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREfweknwhsgvplKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTlptwsdgdvplVPSIERKAVKELQEECRQMlaefpttskqdqkmldsmkepRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

*****PLHQLTYSFFSNPQGQWKWCAKPSYSF*****************************************DFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATE***********************EFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSI***************************************LEAAIKYRLHRKLFIDKVIKALDIYQDRI**

*************************************************************************DFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQ***************EAAIKYRLHRKLFIDKVIKALDIYQDRILF

MAISVPLHQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLAS********AREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

*******HQLTYSFFSNPQGQWKWCAKPSYSF********RAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		480	2.2.26 [Sep-21-2011]
Q9XI84		482	[Fructose-bisphosphate al	no	no	0.727	0.724	0.248	3e-12
P94026		491	Ribulose-1,5 bisphosphate	N/A	no	0.708	0.692	0.227	3e-12
Q43088		489	Ribulose-1,5 bisphosphate	N/A	no	0.727	0.713	0.223	7e-09
P58467		439	SET domain-containing pro	yes	no	0.35	0.382	0.236	2e-05

>sp\|Q9XI84\|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1	Back alignment and function desciption

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 188/414 (45%), Gaps = 65/414 (15%)

Query: 95  PDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDP 154
           P+G G+ A +DI    R  +V++IP  L +           P+ V     I  +     P
Sbjct: 74  PEGLGLVARRDI---GRNEVVLEIPKRLWIN----------PETVT-ASKIGPLCGGLKP 119

Query: 155 ETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPN-LASTM 213
              W + +A  L+    ++++ W++Y D LP + + T  +  +EE+L EL+    L++T+
Sbjct: 120 ---W-VSVALFLIREKYEEESSWRVYLDMLPQSTDST--VFWSEEELAELKGTQLLSTTL 173

Query: 214 REQQKRAREFWEKNWHSGVPLK---IKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQD 270
             ++    EF +      +P K     R+  D   FIWA  I +SR  + ++R   LV  
Sbjct: 174 GVKEYVENEFLKLEQEILLPNKDLFSSRITLDD--FIWAFGILKSRAFS-RLRGQNLV-- 228

Query: 271 ANMLIPYADMLNHSFQPNCF-FHWRFK-----DRMLEVMVNAGQHVRRGEEMTVNYMHGQ 324
              LIP AD++NH+       + +  K      R L   + +  +V+ GE++ + Y   +
Sbjct: 229 ---LIPLADLINHNPAIKTEDYAYEIKGAGLFSRDLLFSLKSPVYVKAGEQVYIQYDLNK 285

Query: 325 MNDMLMQRYGF--SSPV-NPWNVI-------QFSGDA-------RIHLDSFLSVFNISGL 367
            N  L   YGF  S+P  N + +         F GD        ++    +  + +   L
Sbjct: 286 SNAELALDYGFVESNPKRNSYTLTIEIPESDPFFGDKLDIAESNKMGETGYFDIVDGQTL 345

Query: 368 PEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLA 427
           P       ++ +      D  ++ +      W   ++P+  + E    + +++ C+  L+
Sbjct: 346 PAGMLQYLRLVA--LGGPDAFLLESIFNNTIWGHLELPVSRTNEELICRVVRDACKSALS 403

Query: 428 EFPTTSKQDQKMLDSMK-EPRRTLEAAIKYRLHRKLFIDKVIKALD-IYQDRIL 479
            F TT ++D+K+LD  K EPR  LE A+K R+  K    +V++ +D I++DR L
Sbjct: 404 GFDTTIEEDEKLLDKGKLEPR--LEMALKIRIGEK----RVLQQIDQIFKDREL 451

Methylates 'Lys-14' of the large subunit of RuBisCO.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 7

>sp\|P94026\|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1	Back alignment and function description

>sp\|Q43088\|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1	Back alignment and function description

>sp\|P58467\|SETD4_MOUSE SET domain-containing protein 4 OS=Mus musculus GN=Setd4 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		480
359473101		482	PREDICTED: uncharacterized protein LOC10	0.993	0.989	0.802	0.0
255574450		483	conserved hypothetical protein [Ricinus	0.993	0.987	0.784	0.0
449454790		482	PREDICTED: ribulose-1,5 bisphosphate car	0.995	0.991	0.760	0.0
356530082		482	PREDICTED: ribulose-1,5 bisphosphate car	0.997	0.993	0.753	0.0
42566980		483	plastid transcriptionally active 14 prot	0.991	0.985	0.731	0.0
62320136		483	hypothetical protein [Arabidopsis thalia	0.991	0.985	0.731	0.0
110740216		483	hypothetical protein [Arabidopsis thalia	0.991	0.985	0.728	0.0
297804126		483	PTAC14 [Arabidopsis lyrata subsp. lyrata	0.991	0.985	0.737	0.0
356556146		483	PREDICTED: ribulose-1,5 bisphosphate car	1.0	0.993	0.757	0.0
226499862		494	uncharacterized protein LOC100279779 [Ze	0.9	0.874	0.670	1e-177

>gi\|359473101\|ref\|XP_002275523.2\| PREDICTED: uncharacterized protein LOC100264713 [Vitis vinifera] gi\|297738036\|emb\|CBI27237.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/485 (80%), Positives = 438/485 (90%), Gaps = 8/485 (1%)

Query: 1   MAISVPLHQLTYSFFSNPQGQWKWC-----AKPSYSFSNNSQNNIRAIKASVETPPFPLF 55
           MA S  LH  T+ F S+ QG   +C     ++P+YS+   S NNIR IKA+VE PPFPLF
Sbjct: 1   MASSPLLHHPTHCFISSNQG---FCNGLSSSRPNYSWMRGSGNNIRPIKAAVEMPPFPLF 57

Query: 56  QNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLV 115
           + P++E      LEPADPDFYKIGYVRS+RAYGVEFKEGPDGFGV+ASKD+EP RRAR++
Sbjct: 58  EPPQIESDTPSQLEPADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDVEPLRRARMI 117

Query: 116 MQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDN 175
           M+IPLELMLTIR+KLPWMFFPDIVP+GHPIFDIINST+PETDWDLRLACLLL+AFDQ+DN
Sbjct: 118 MEIPLELMLTIRKKLPWMFFPDIVPVGHPIFDIINSTNPETDWDLRLACLLLFAFDQEDN 177

Query: 176 FWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLK 235
           FWQLYGDFLP+  ECTSLLLA EEDL+ELQDP LASTMR+QQ+RA EFWEKNWHSGVPLK
Sbjct: 178 FWQLYGDFLPSEGECTSLLLAKEEDLLELQDPKLASTMRDQQRRASEFWEKNWHSGVPLK 237

Query: 236 IKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRF 295
           IKRLA DP RFIWAVSIAQSRCINMQ+RIGALVQDANMLIPYADMLNHSFQPNCFFHWRF
Sbjct: 238 IKRLARDPNRFIWAVSIAQSRCINMQMRIGALVQDANMLIPYADMLNHSFQPNCFFHWRF 297

Query: 296 KDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHL 355
           KDRMLEVM+NAGQ +++GEEMTVNYM G  NDMLMQRYGFSSPVNPW+VIQFSG+A+IHL
Sbjct: 298 KDRMLEVMINAGQRIKKGEEMTVNYMSGLKNDMLMQRYGFSSPVNPWDVIQFSGNAQIHL 357

Query: 356 DSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAV 415
           DSFLSVFNISGLPEEYYHNS++S++ +SF+DGAVIAAARTLPTWSDGDVP +PS+ERKAV
Sbjct: 358 DSFLSVFNISGLPEEYYHNSRLSNNGDSFVDGAVIAAARTLPTWSDGDVPPMPSMERKAV 417

Query: 416 KELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQ 475
           K+LQEEC+QML EFPTTS+QDQK+LDSM E RRTLEAAIKYRLHRKL I+KVI+ALDIYQ
Sbjct: 418 KQLQEECQQMLLEFPTTSEQDQKILDSMTEERRTLEAAIKYRLHRKLLIEKVIQALDIYQ 477

Query: 476 DRILF 480
           +RILF
Sbjct: 478 ERILF 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255574450\|ref\|XP_002528137.1\| conserved hypothetical protein [Ricinus communis] gi\|223532435\|gb\|EEF34228.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi|449454790|ref|XP_004145137.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449471403|ref|XP_004153299.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449474044|ref|XP_004154058.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449503343|ref|XP_004161955.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus]

Back alignment and taxonomy information

>gi\|356530082\|ref\|XP_003533613.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|42566980\|ref\|NP_193746.3\| plastid transcriptionally active 14 protein [Arabidopsis thaliana] gi\|28393566\|gb\|AAO42203.1\| unknown protein [Arabidopsis thaliana] gi\|28973141\|gb\|AAO63895.1\| unknown protein [Arabidopsis thaliana] gi\|110740232\|dbj\|BAF02014.1\| hypothetical protein [Arabidopsis thaliana] gi\|332658878\|gb\|AEE84278.1\| plastid transcriptionally active 14 protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|62320136\|dbj\|BAD94330.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110740216\|dbj\|BAF02006.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297804126\|ref\|XP_002869947.1\| PTAC14 [Arabidopsis lyrata subsp. lyrata] gi\|297315783\|gb\|EFH46206.1\| PTAC14 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356556146\|ref\|XP_003546388.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|226499862\|ref\|NP_001146209.1\| uncharacterized protein LOC100279779 [Zea mays] gi\|219886187\|gb\|ACL53468.1\| unknown [Zea mays] gi\|219888379\|gb\|ACL54564.1\| unknown [Zea mays] gi\|413948639\|gb\|AFW81288.1\| hypothetical protein ZEAMMB73_810642 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		480
TAIR\|locus:2119822		483	PTAC14 "plastid transcriptiona	0.997	0.991	0.733	2.9e-199
TAIR\|locus:2014764		482	LSMT-L "lysine methyltransfera	0.7	0.697	0.248	8.5e-12
TAIR\|locus:2024066		476	AT1G24610 "AT1G24610" [Arabido	0.402	0.405	0.266	1.1e-08
ASPGD\|ASPL0000031671		707	AN5630 [Emericella nidulans (t	0.333	0.226	0.280	2.2e-05
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.431	0.347	0.279	4.3e-05
ZFIN\|ZDB-GENE-050808-2		440	setd4 "SET domain containing 4	0.472	0.515	0.236	6.3e-05
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.431	0.347	0.275	0.00011
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.431	0.347	0.275	0.00014
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.431	0.348	0.275	0.00018
MGI\|MGI:1289184		594	Setd3 "SET domain containing 3	0.362	0.292	0.289	0.00019

TAIR\|locus:2119822 PTAC14 "plastid transcriptionally active 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1929 (684.1 bits), Expect = 2.9e-199, P = 2.9e-199
 Identities = 355/484 (73%), Positives = 421/484 (86%)

Query:     1 MAISVPLHQLTYSFFSNPQGQWKWCA---KPSYSFSNNSQNNIRAIK-ASVETPPFPLFQ 56
             MA SV L  LT +F S PQG         +P  +   + QN +R IK AS+ET PFPLFQ
Sbjct:     1 MASSVSLQFLTNTFISKPQGFCNGIVSAPRPRSNLLRDRQNGVRPIKVASIETQPFPLFQ 60

Query:    57 NPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARLVM 116
             +P  EE+ +  LE ADPDFYKIGYVRS+RAYGVEFKEGPDGFGV+ASKDIEPRRRAR++M
Sbjct:    61 SPASEESSSSELETADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDIEPRRRARVIM 120

Query:   117 QIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPETDWDLRLACLLLYAFDQDDNF 176
             +IPLELM+TIRQK PWMFFPDIVP+GHPIFDIINSTDPE DWD+RLACLLL++FD+DD+F
Sbjct:   121 EIPLELMITIRQKHPWMFFPDIVPIGHPIFDIINSTDPEIDWDIRLACLLLFSFDRDDHF 180

Query:   177 WQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKI 236
             W+LYGDFLP ADEC+SLLLATEEDL ELQDP+L ST+R+QQKR  +FWEKNWHSGVPLKI
Sbjct:   181 WRLYGDFLPAADECSSLLLATEEDLAELQDPDLVSTIRQQQKRILDFWEKNWHSGVPLKI 240

Query:   237 KRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFK 296
             KRLA DPERFIWAVS+AQ+RCI+MQ R+GALVQ+ NM+IPYADMLNHSF+PNCF HWR K
Sbjct:   241 KRLAEDPERFIWAVSMAQTRCISMQTRVGALVQELNMMIPYADMLNHSFEPNCFLHWRPK 300

Query:   297 DRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLD 356
             DRMLEVM NAGQ +++GEEMT+NYM GQ N+MLM+RYGFS+PVNPW+ I+FSGD+RIHL+
Sbjct:   301 DRMLEVMSNAGQDIKKGEEMTINYMPGQKNNMLMERYGFSTPVNPWDAIKFSGDSRIHLN 360

Query:   357 SFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVK 416
             SFLSVFNI GLPEEYYH+S++S  + +F+DGAVIAAARTLPTWSD D+P +PS ERKAVK
Sbjct:   361 SFLSVFNIYGLPEEYYHDSELSRGD-TFVDGAVIAAARTLPTWSDIDLPPIPSAERKAVK 419

Query:   417 ELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQD 476
             ELQ+ECR+MLAE+PTT++QDQK+LDSM E R T   A+KYR+HRK+FI K+IKALDIYQ+
Sbjct:   420 ELQDECRKMLAEYPTTAEQDQKLLDSMSEARTTFATAVKYRMHRKMFIGKIIKALDIYQE 479

Query:   477 RILF 480
             R+L+
Sbjct:   480 RLLY 483

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR\|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024066 AT1G24610 "AT1G24610" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000031671 AN5630 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050808-2 setd4 "SET domain containing 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1289184 Setd3 "SET domain containing 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		480
pfam00856		113	pfam00856, SET, SET domain	7e-11
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	5e-06
smart00317		124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	3e-05

>gnl\|CDD\|216155 pfam00856, SET, SET domain	Back alignment and domain information

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 270 DANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 320
           DA  L   A  +NHS +PNC   + F +    ++V A + ++ GEE+T++Y
Sbjct: 62  DATGLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEELTIDY 112

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

>gnl\|CDD\|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		480
KOG1337		472	consensus N-methyltransferase [General function pr	99.97
KOG1338		466	consensus Uncharacterized conserved protein [Funct	99.96
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.65
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.37
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	98.35
KOG1085		392	consensus Predicted methyltransferase (contains a	95.84
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	94.97
KOG2589		453	consensus Histone tail methylase [Chromatin struct	94.74
KOG1080		1005	consensus Histone H3 (Lys4) methyltransferase comp	93.66
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	92.9
COG2940		480	Proteins containing SET domain [General function p	87.8
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	85.55
KOG1083		1306	consensus Putative transcription factor ASH1/LIN-5	84.59

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=99.97  E-value=1e-30  Score=277.13  Aligned_cols=376  Identities=22%  Similarity=0.249  Sum_probs=258.9

Q ss_pred             ccccccccc-ccCC--CceEEeeC-CCccEEEEeccCCCccCCceEEEcCccccccccccCCCCCCCCCCCCCchhhhhh
Q 011639           74 DFYKIGYVR-SMRA--YGVEFKEG-PDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDII  149 (480)
Q Consensus        74 ~f~~i~Wl~-~~G~--~~v~i~~~-~~GrGl~At~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~lg~~~~~~l  149 (480)
                      .+.  .|+. +.+.  +.++.... ..|.|+.+.+.+.+   |..+...|....++.......       .+..+.....
T Consensus        33 g~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  100 (472)
T KOG1337|consen   33 GLV--RWAASESIASSENIKSLKFWLTGNGLSSSKSSLP---GNDIDEWPLLVSIRLIKGEKL-------LLVPPLLLLI  100 (472)
T ss_pred             cce--eeeecccCCCccccccceeccccCCcchhhhccc---cccccccchhhhhhhhhhhhh-------ccCCchhhhc
Confidence            455  8888 4442  33333333 34888888888765   577777777766665433210       0111111122


Q ss_pred             ccCCCCCchh-HHHHHHHHHHh-CCCCChhhhhhhcCCCCCCCCCccccCHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Q 011639          150 NSTDPETDWD-LRLACLLLYAF-DQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKN  227 (480)
Q Consensus       150 ~~~~~~~~~~-~~Lal~Ll~e~-~~~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~~  227 (480)
                      +...+...+. ..++++++++. .+..|.|.+|+..||..+  ++|++|...++..|+++.....+..++..++..+.+.
T Consensus       101 ~~~~~~~~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~--~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~  178 (472)
T KOG1337|consen  101 AKRKPYNDLLPIALALFLLLEWAHGEISKWKPYISTLPSQY--NSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAEL  178 (472)
T ss_pred             cccccCccccHHHHHHHHHHhhhccccccchhhhhhchhhc--CCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHH
Confidence            2222222333 67889999998 566699999999999995  7899999999999999999988888777666644333


Q ss_pred             hc--cCCccccc---ccCCCHHHHHHHHHhhhccccccccccc---ccccCceeeeeeecccCCCCCCCceEEEEecCCe
Q 011639          228 WH--SGVPLKIK---RLAHDPERFIWAVSIAQSRCINMQVRIG---ALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRM  299 (480)
Q Consensus       228 ~~--~~~p~~~~---~~~~t~e~f~WA~~~v~SRaf~~~~~~~---~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~  299 (480)
                      ..  ...+..+.   ...++++.|.||+++|.||+|+......   .......+|+|++||+||+++. +...|+..+++
T Consensus       179 ~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~  257 (472)
T KOG1337|consen  179 LEVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEA  257 (472)
T ss_pred             HHHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCc
Confidence            21  11111111   1127899999999999999999988731   1235689999999999999987 45667666665


Q ss_pred             EEEEEEecccCCCCcEEEEccCCCCChHHHHHhCCccCCCCCCCeEEecccccccc---chhhchhhhcCCCccccccee
Q 011639          300 LEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHL---DSFLSVFNISGLPEEYYHNSK  376 (480)
Q Consensus       300 ~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~~~Np~D~v~l~~~~~~~~---d~~~~~l~~~gl~~~~~~~~~  376 (480)
                        +.+++.++|++||||||+||++ +|++||.+|||+.++||+|.|.+.+......   ......+...+++...++.+.
T Consensus       258 --~~l~~~~~v~~geevfi~YG~~-~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (472)
T KOG1337|consen  258 --VELVAERDVSAGEEVFINYGPK-SNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSIL  334 (472)
T ss_pred             --EEEEEeeeecCCCeEEEecCCC-chHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEe
Confidence              6789999999999999999999 7999999999999999999999877654211   111223444555544333222


Q ss_pred             eccCCCccchHHHHHHHH---hcC------------------CCCCCCCCCCChhHHHHHHHHHHH-HHHHHHhCCCChH
Q 011639          377 ISSDEESFIDGAVIAAAR---TLP------------------TWSDGDVPLVPSIERKAVKELQEE-CRQMLAEFPTTSK  434 (480)
Q Consensus       377 l~~~~~~~~d~~Ll~~lr---~l~------------------~~~~~~~~~s~~~E~~~~~~L~~~-~~~~L~~y~ttle  434 (480)
                      ...  .. .. .++.+..   .+.                  .+.....+.+.++|.+.+..+... |...+..+.++++
T Consensus       335 ~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~  410 (472)
T KOG1337|consen  335 LTG--EP-VS-EMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALID  410 (472)
T ss_pred             ecC--Cc-hh-hhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhh
Confidence            221  11 00 1111111   110                  011123355667999999999998 8888899999999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011639          435 QDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALD  472 (480)
Q Consensus       435 eD~~~L~~~~~~~~~~~~A~~~R~~eK~IL~~~l~~L~  472 (480)
                      +|+..+... .++.+..++..++.++|+||.+++..+.
T Consensus       411 ~~~~vl~~~-~l~~~~~~~~k~~~~~~~iL~~~~~~~~  447 (472)
T KOG1337|consen  411 EDESVLKDN-ILSKLLELLEKLRTLEKRILEKSLKLLR  447 (472)
T ss_pred             hhhhhhccc-ccchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            999988863 5678899999999999999999998776

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

>COG2940 Proteins containing SET domain [General function prediction only]	Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		480
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		6e-10
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		8e-10

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

Iteration: 1

Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 97/425 (22%), Positives = 166/425 (39%), Gaps = 76/425 (17%) Query: 96 DGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDIINSTDPE 155 +G G+ A KDI R +++Q+P L + PD V I + + P Sbjct: 36 EGLGLVALKDIS---RNDVILQVPKRLWIN----------PDAVA-ASEIGRVCSELKP- 80 Query: 156 TDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMRE 215 W L + L+ ++D+ W+ Y LP E S + +EE+L ELQ L T Sbjct: 81 --W-LSVILFLIRERSREDSVWKHYFGILPQ--ETDSTIYWSEEELQELQGSQLLKTTVS 135 Query: 216 QQKRAREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIGALVQDAN 272 ++ + K + L KRL DP + F WA I +SR + ++R LV Sbjct: 136 VKEYVKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFS-RLRNENLV---- 189 Query: 273 MLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQ-------------HVRRGEEMTVN 319 ++P AD++NHS +D EV AG V+ GE++ + Sbjct: 190 -VVPMADLINHSAGVTT------EDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 242 Query: 320 YMHGQMNDMLMQRYGFSSPVNPWNVIQFS---GDARIHLDSFLSVFNISGLPEEYY---- 372 Y + N L YGF P + + ++ D L V +G + Y Sbjct: 243 YDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIF 302 Query: 373 HNSKISSDEESFIDGAVIAAARTL--------PTWSDGDVPLVPSIERKAVKELQEECRQ 424 +N + ++ + W ++ + E K ++E C+ Sbjct: 303 YNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKS 362 Query: 425 MLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDIY 474 LA + TT +QD+++ + + R L A+ R K+ + ++ + L+ Y Sbjct: 363 ALAGYHTTIEQDRELKEGNLDSR--LAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYY 420 Query: 475 QDRIL 479 Q+R L Sbjct: 421 QERRL 425

PyMOL of 1mlv

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		480
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	6e-52
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	2e-48
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	2e-38
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	5e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	7e-06
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	2e-04
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	3e-04
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	5e-04

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

 Score =  180 bits (458), Expect = 6e-52
 Identities = 85/426 (19%), Positives = 156/426 (36%), Gaps = 64/426 (15%)

Query: 89  VEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDI 148
           V+     +G G+ A KDI       +++Q+P  L +                        
Sbjct: 25  VKASVVTEGLGLVALKDISR---NDVILQVPKRLWINPDAVAASEIGRVC---------- 71

Query: 149 INSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPN 208
                 E    L +   L+    ++D+ W+ Y   LP   E  S +  +EE+L ELQ   
Sbjct: 72  -----SELKPWLSVILFLIRERSREDSVWKHYFGILP--QETDSTIYWSEEELQELQGSQ 124

Query: 209 LASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIG 265
           L  T    ++  +    K     + L  KRL  DP   + F WA  I +SR  +      
Sbjct: 125 LLKTTVSVKEYVKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLR--- 180

Query: 266 ALVQDANMLIPYADMLNHSFQPNCFFH-------WRFKDRMLEVMVNAGQHVRRGEEMTV 318
               +  +++P AD++NHS       H                  + +   V+ GE++ +
Sbjct: 181 ---NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYI 237

Query: 319 NYMHGQMNDMLMQRYGFSSPVNPWNVIQFS---GDARIHLDSFLSVFNISGLPEEYYH-- 373
            Y   + N  L   YGF  P    +    +    ++    D  L V   +G  +  Y   
Sbjct: 238 QYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDI 297

Query: 374 --NSKISSDEESFI--------DGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECR 423
             N  +      ++        D  ++ +      W   ++ +    E    K ++E C+
Sbjct: 298 FYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACK 357

Query: 424 QMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDI 473
             LA + TT +QD+++ +   + R  +  A+  R   K+ + ++          +  L+ 
Sbjct: 358 SALAGYHTTIEQDRELKEGNLDSRLAI--AVGIREGEKMVLQQIDGIFEQKELELDQLEY 415

Query: 474 YQDRIL 479
           YQ+R L
Sbjct: 416 YQERRL 421

PyMOL of 2h21

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		480
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	99.43
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	99.33
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	99.24
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	98.22
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	97.91
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	97.56
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	97.44
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	97.36
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	97.35
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	97.32
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	97.29
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	97.15
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	96.88
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	96.72
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	96.61
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	96.52
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	96.45
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	96.43
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	96.4
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	92.94
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	92.38
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	91.14
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	90.13
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	88.04
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	86.86
3ray_A		237	PR domain-containing protein 11; structural genomi	84.7

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.6e-60  Score=505.03  Aligned_cols=376  Identities=23%  Similarity=0.308  Sum_probs=297.4

Q ss_pred             CCCcccccccccccC--CCceEEeeCCC-ccEEEEeccCCCccCCceEEEcCccccccccccCCCCCCCCCCCCCchhh-
Q 011639           71 ADPDFYKIGYVRSMR--AYGVEFKEGPD-GFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIF-  146 (480)
Q Consensus        71 ~~~~f~~i~Wl~~~G--~~~v~i~~~~~-GrGl~At~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~lg~~~~-  146 (480)
                      ..++|.  +|++++|  .++|+++..++ ||||+|++||++   |++|++||.+++||.+++..+       .+|+.+. 
T Consensus        77 ~~~~ll--~W~~~~G~~~~~v~i~~~~~~GrGl~A~~dI~~---ge~ll~IP~~lllt~~~a~~s-------~l~~~~~~  144 (497)
T 3smt_A           77 YFPDLM--KWASENGASVEGFEMVNFKEEGFGLRATRDIKA---EELFLWVPRKLLMTVESAKNS-------VLGPLYSQ  144 (497)
T ss_dssp             GHHHHH--HHHHHTTCCCTTEEEEEETTTEEEEEESSCBCT---TCEEEEEEGGGCEEHHHHHTS-------TTHHHHHH
T ss_pred             HHHHHH--HHHHHCCCCccceEEEEcCCCccEEEEcccCCC---CCEEEEcCHHHhCcHHhhhhh-------hccccccc
Confidence            456778  9999999  56899998665 999999999999   699999999999999987632       1332110 


Q ss_pred             h-hhccCCCCCchhHHHHHHHHHHhCCCCChhhhhhhcCCCCCCCCCccccCHHHHhccCCCcHHHHHHHHHHHHHHHHH
Q 011639          147 D-IINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWE  225 (480)
Q Consensus       147 ~-~l~~~~~~~~~~~~Lal~Ll~e~~~~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~  225 (480)
                      + .+..    .+ ...|+++|++|+.++.|+|+||+++||+.  +++|++|+++|++.|+|+++...+.++.+.+.+.|.
T Consensus       145 ~~~l~~----~~-~~~Lal~Ll~E~~~~~S~w~pYl~~LP~~--~~~pl~w~~eel~~L~gt~l~~~v~~~~~~~~~~~~  217 (497)
T 3smt_A          145 DRILQA----MG-NIALAFHLLCERASPNSFWQPYIQTLPSE--YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYA  217 (497)
T ss_dssp             CHHHHH----CH-HHHHHHHHHHHHTCTTCTTHHHHTTSCSC--CCSGGGCCHHHHHTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccc----cc-HHHHHHHHHHHhcCCCCchHHHHHhCCCC--CCCCCcCCHHHHhhccCCcHHHHHHHHHHHHHHHHH
Confidence            0 1111    12 35789999999989999999999999998  579999999999999999999988877777766766


Q ss_pred             HHhc--cCCccc--cc-ccCCCHHHHHHHHHhhhcccccccccccccccCceeeeeeecccCCCCCCCceEEEEecCCeE
Q 011639          226 KNWH--SGVPLK--IK-RLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRML  300 (480)
Q Consensus       226 ~~~~--~~~p~~--~~-~~~~t~e~f~WA~~~v~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~  300 (480)
                      ....  ...|..  ++ ...+|++.|+||+++|+||+|.++..+|.  ....+|||++||+||++.++ ++.|+.+++. 
T Consensus       218 ~~~~~~~~~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~--~~~~~LvP~~Dm~NH~~~~~-~~~~~~~~~~-  293 (497)
T 3smt_A          218 YFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGS--RVTLALIPLWDMCNHTNGLI-TTGYNLEDDR-  293 (497)
T ss_dssp             HHHHHC----CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSS--SEEEEECTTGGGCEECSCSE-EEEEETTTTE-
T ss_pred             HHHHHHHhCcccccCccccccCHHHHHHhhheEecccccccCcccc--cccceeechHHhhcCCCccc-ceeeeccCCe-
Confidence            5432  112211  11 23579999999999999999998765432  23679999999999999763 4678766676 


Q ss_pred             EEEEEecccCCCCcEEEEccCCCCChHHHHHhCCccCCCCCCCeEEeccccccccchhh----chhhhcCCCccccccee
Q 011639          301 EVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFL----SVFNISGLPEEYYHNSK  376 (480)
Q Consensus       301 ~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~~~Np~D~v~l~~~~~~~~d~~~----~~l~~~gl~~~~~~~~~  376 (480)
                       +.+++.++|++||||||+||++ +|++||++|||++++||+|.|.|.++.. ..|++.    +.|+..|+.....  +.
T Consensus       294 -~~~~a~~~i~~Geei~isYG~~-~n~~Ll~~YGFv~~~Np~D~v~l~l~~~-~~d~l~~~K~~~L~~~gl~~~~~--f~  368 (497)
T 3smt_A          294 -CECVALQDFRAGEQIYIFYGTR-SNAEFVIHSGFFFDNNSHDRVKIKLGVS-KSDRLYAMKAEVLARAGIPTSSV--FA  368 (497)
T ss_dssp             -EEEEESSCBCTTCEEEECCCSC-CHHHHHHHHSCCCTTCTTCEEEEEEECC-TTSTTHHHHHHHHHHTTCCSEEE--EE
T ss_pred             -EEEEeCCccCCCCEEEEeCCCC-ChHHHHHHCCCCCCCCCCceEEEEecCC-CcchhHHHHHHHHHHcCCCccce--ee
Confidence             6778999999999999999999 8999999999999999999999988765 345542    3467788876432  33


Q ss_pred             eccCCCccchHHHHHHHHhcCC--------------------CCCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCChHHH
Q 011639          377 ISSDEESFIDGAVIAAARTLPT--------------------WSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQD  436 (480)
Q Consensus       377 l~~~~~~~~d~~Ll~~lr~l~~--------------------~~~~~~~~s~~~E~~~~~~L~~~~~~~L~~y~ttleeD  436 (480)
                      +..++ ..++.+|++++|++..                    |.+.+.|+|.+||.++++.|...|..+|+.|+||+++|
T Consensus       369 l~~~~-~~~~~~Ll~~LRvl~~~~~el~~~~~~~~~~~~~~~l~~~~~piS~~nE~~v~~~L~~~~~~~L~~Y~TtieeD  447 (497)
T 3smt_A          369 LHFTE-PPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEED  447 (497)
T ss_dssp             EESSS-SCSCHHHHHHHHHHTCCHHHHHHHHHTCSSSCTTTTTTCTTSCSCHHHHHHHHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             eecCC-CCCCHHHHHHHHHHhCCHHHHHHHhcccchhhhhhhcccccCCCChhhHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            33322 3468899999999720                    12234578889999999999999999999999999999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011639          437 QKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQD  476 (480)
Q Consensus       437 ~~~L~~~~~~~~~~~~A~~~R~~eK~IL~~~l~~L~~~~~  476 (480)
                      +++|++. .++.+.++|+++|++||+||+++++.++..++
T Consensus       448 e~lL~~~-~ls~r~r~Av~vR~gEK~IL~~~l~~~~~~~~  486 (497)
T 3smt_A          448 KSVLKNH-DLSVRAKMAIKLRLGEKEILEKAVKSAAVNRE  486 (497)
T ss_dssp             HHHTTCT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999873 57899999999999999999999987765543

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		480
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	7e-25
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	2e-11
d2f69a2		171	b.85.7.1 (A:194-364) Histone H3 K4-specific methyl	1e-04
d1mvha_		269	b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S	3e-04
d1ml9a_		284	b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T	0.001
d2g46a1		119	b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth	0.002

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  101 bits (251), Expect = 7e-25
 Identities = 59/262 (22%), Positives = 95/262 (36%), Gaps = 37/262 (14%)

Query: 89  VEFKEGPDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIFDI 148
           V+     +G G+ A KDI       +++Q+P  L +                        
Sbjct: 24  VKASVVTEGLGLVALKDISR---NDVILQVPKRLWINPDAVAA---------------SE 65

Query: 149 INSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPN 208
           I     E    L +   L+    ++D+ W+ Y   LP   E  S +  +EE+L ELQ   
Sbjct: 66  IGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILP--QETDSTIYWSEEELQELQGSQ 123

Query: 209 LASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIG 265
           L  T    ++  +    K     + L  KRL  DP   + F WA  I +SR  +      
Sbjct: 124 LLKTTVSVKEYVKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNEN 182

Query: 266 ALVQDANMLIPYADMLNHSFQPNCFFHW-------RFKDRMLEVMVNAGQHVRRGEEMTV 318
                  +++P AD++NHS       H                  + +   V+ GE++ +
Sbjct: 183 L------VVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYI 236

Query: 319 NYMHGQMNDMLMQRYGFSSPVN 340
            Y   + N  L   YGF  P  
Sbjct: 237 QYDLNKSNAELALDYGFIEPNE 258

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		480
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	99.64
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	98.08
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	97.62
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	96.89
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	96.88
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	91.04

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=2.4e-40  Score=320.29  Aligned_cols=244  Identities=23%  Similarity=0.329  Sum_probs=191.1

Q ss_pred             CCCcccccccccccC--CCceEEee-C-CCccEEEEeccCCCccCCceEEEcCccccccccccCCCCCCCCCCCCCchhh
Q 011639           71 ADPDFYKIGYVRSMR--AYGVEFKE-G-PDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIF  146 (480)
Q Consensus        71 ~~~~f~~i~Wl~~~G--~~~v~i~~-~-~~GrGl~At~dI~~~~~Ge~ll~IP~~~~ls~~~~~~~~~f~~~~~lg~~~~  146 (480)
                      ...+|.  +|++++|  +++|.+.. . ..||||+|++||++   ||+|++||..++|+.+++..+       .+++   
T Consensus         4 ~~~~~~--~W~~~~g~~~~~~~~~~~~~~~GrGl~AtrdI~~---Ge~il~vP~~~~lt~~~~~~~-------~~~~---   68 (261)
T d2h2ja2           4 AVQTFW--KWLQEEGVITAKTPVKASVVTEGLGLVALKDISR---NDVILQVPKRLWINPDAVAAS-------EIGR---   68 (261)
T ss_dssp             HHHHHH--HHHHTTTSSCSSCCCEEEEETTEEEEECSSCCCT---TCEEEEEEGGGCCSHHHHHTS-------GGGT---
T ss_pred             HHHHHH--HHHHHCCCccCCceEeecCCCceeEEEECCcCCC---CCEEEEeChHHhccHHHhhhh-------HHHH---
Confidence            345578  9999999  45666654 2 34999999999999   799999999999998876532       1222   


Q ss_pred             hhhccCCCCCchhHHHHHHHHHHhCCCCChhhhhhhcCCCCCCCCCccccCHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Q 011639          147 DIINSTDPETDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEK  226 (480)
Q Consensus       147 ~~l~~~~~~~~~~~~Lal~Ll~e~~~~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~  226 (480)
                       .+..   ..+| ..++++|++|+.+..|.|+||+++||+.  ..+|++|+.++++.|+++.+...+....+.+.+.|.+
T Consensus        69 -~~~~---~~~~-~~l~~~l~~e~~~~~s~~~~y~~~lp~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  141 (261)
T d2h2ja2          69 -VCSE---LKPW-LSVILFLIRERSREDSVWKHYFGILPQE--TDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLK  141 (261)
T ss_dssp             -TTTT---SCHH-HHHHHHHHHHHHCTTCTTHHHHTTSCSC--CSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHhh---cCcH-HHHHHHHHHHHhCCCCchhhhhhccccc--cCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence             1211   2333 6788999999999999999999999998  4789999999999999999999998888888888877


Q ss_pred             HhccCCcc--cccccCCCHHHHHHHHHhhhcccccccccccccccCceeeeeeecccCCCCCCCceEEEEec-------C
Q 011639          227 NWHSGVPL--KIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFK-------D  297 (480)
Q Consensus       227 ~~~~~~p~--~~~~~~~t~e~f~WA~~~v~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~-------~  297 (480)
                      ........  ......++++.|.||+++|.||+|.....      ...+|+|++||+||++.+|+...+...       .
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~sr~~~~~~~------~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~  215 (261)
T d2h2ja2         142 LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRN------ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFS  215 (261)
T ss_dssp             HHHHTTTTTTTTCCSCCCHHHHHHHHHHHHHHSBCCC---------CCBCCTTGGGCEECSSCCSCCCCCC---------
T ss_pred             HHHHHHhhhhhhccCccCHHHHHHHHHHhhccccccccc------ccccchhhhHHhhcCCCCCcccccccccCcccccC
Confidence            65432111  11123478999999999999999988653      468999999999999999985443221       1


Q ss_pred             CeEEEEEEecccCCCCcEEEEccCCCCChHHHHHhCCccCCC-CCC
Q 011639          298 RMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPV-NPW  342 (480)
Q Consensus       298 ~~~~~~l~a~r~i~~GeEv~isYG~~~sN~~LL~~YGFv~~~-Np~  342 (480)
                      +...++|+|.|+|++|||||||||+..+|++||.+||||+++ |||
T Consensus       216 ~~~~~~l~A~r~I~~GEEI~isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         216 WDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             --CEEEEECSSCCCTTSBCEECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             CCcEEEEEECCCCCCCCEEEEecCCCCCHHHHHHhCCCCCCCCCCC
Confidence            122378899999999999999999644899999999999874 987

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure