Citrus Sinensis ID: 011665

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MVTEFLAQLNLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
cHHHHHHHHHHHHHHHHHcccccccEEEEEccEEEEcccccccccccccHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccc
cccEEEEEcccHHHHHHHcccccEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEEcHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHcccccccHHHHHHHHHHHcccccc
MVTEFLAQLNLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNkivlddlpggpeAFELAAKFCYGIAVdltasnisGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWkacanpkgirwaytgrppkisspkwndmkdsspsrsqpvppdwwfedvsilrIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLiressgtadeissysasnsngscsswkGGLHMIVAGmkddpptvqakDQRMIIESLIsiippqkdsvSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLlipayskgetlyDVDLVQRLLEHFLVQeqtessspsrqsfsdkhmydasqrgngtsaKMRVARLVDGYLTEVARDRNLSLTKFQVLAEAlpesartcdDGLYRAIDSYLKVISNFCY
MVTEFLAQLNLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPkisspkwndmkdsspsrsqpvppdWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLisiippqkdsVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVqeqtessspsrqsfsdKHMYDasqrgngtsakmrVARLVDGYLTEvardrnlslTKFQVLAealpesartcddGLYRAIDSYLKVISNFCY
MVTEFLAQLNLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEIssysasnsngscssWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
***EFLAQLNLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTG**************************DWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIR***********************WKGGLHMIVAG************QRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLV*********************************RVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFC*
**TEFL*QLNLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKM****************LDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPK***********************************WWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESS*******************SWK*******************KDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFL**********************************RVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNF**
MVTEFLAQLNLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPK***************PPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESS*****************CSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLV********************DASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
*VTEFLAQLNLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAY*************************VPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGL*********************************************AKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQT************************TSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVTEFLAQLNLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
Q9FMF5 746 Root phototropism protein yes no 0.889 0.572 0.711 0.0
Q5KS50 762 Coleoptile phototropism p yes no 0.918 0.578 0.594 1e-154
Q9S9Q9 665 BTB/POZ domain-containing no no 0.833 0.601 0.409 1e-83
Q9LYW0 592 BTB/POZ domain-containing no no 0.822 0.667 0.385 3e-78
Q9LFU0 607 Putative BTB/POZ domain-c no no 0.714 0.565 0.391 3e-78
Q9FN09 579 BTB/POZ domain-containing no no 0.827 0.685 0.365 9e-77
Q9FKB6 614 BTB/POZ domain-containing no no 0.760 0.594 0.374 3e-72
Q9FNB3 591 Putative BTB/POZ domain-c no no 0.835 0.678 0.379 6e-72
O80970 634 BTB/POZ domain-containing no no 0.791 0.599 0.363 7e-72
Q9C9V6 631 BTB/POZ domain-containing no no 0.816 0.621 0.397 1e-71
>sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2 Back     alignment and function desciption
 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/481 (71%), Positives = 371/481 (77%), Gaps = 54/481 (11%)

Query: 47  TRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAE 106
           +RSGKMNRLIYESRD +   ++LDDLPGGPEAFELA+KFCYG+ VDLTA+NISGLRCAAE
Sbjct: 74  SRSGKMNRLIYESRDPDPTILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAE 133

Query: 107 YLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIA 166
           YLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKSCEKLSPWAENLQIVRRCSESIA
Sbjct: 134 YLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIA 193

Query: 167 WKACANPKGIRWAYTGRPPKI-------SSPKWNDMKDS----SPSR---SQPVPPDWWF 212
           WKAC+NPKGIRWAYTG+ P         SSP+WN+ KDS    SPSR   SQPVPPDWWF
Sbjct: 194 WKACSNPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWF 253

Query: 213 EDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESS-GTADEISS--- 268
           EDVSILRIDHFVRV+TAIKVKGMRFEL+GA IMHYA KWL GLI+E     A  +SS   
Sbjct: 254 EDVSILRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIG 313

Query: 269 --------------YSASNSNGSCSSWKGGLHMIVAGMKDDPPT----------VQAKDQ 304
                          S S+   S   WKGGLHM+++  K +             +  KDQ
Sbjct: 314 GGLGLGGDEMSISCGSNSSGGSSGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQ 373

Query: 305 RMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLL 364
           RMI+ESLISIIPPQKDSV+CSFLLRLLR ANMLKVAPAL+TELEKRVGMQFEQATL DLL
Sbjct: 374 RMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLL 433

Query: 365 IPAY-SKGETLYDVDLVQRLLEHFLVQEQTES-SSPSRQSFSDKHMYDASQR-------- 414
           IP Y +KGET+YDVDLVQRLLEHFLVQEQTE  S         + MY    R        
Sbjct: 434 IPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGGG 493

Query: 415 --GNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYL 472
             GN  +AKMRVARLVD YLTEVARDRNL LTKFQVLAEALPESARTCDDGLYRAIDSYL
Sbjct: 494 GGGNNQNAKMRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDSYL 553

Query: 473 K 473
           K
Sbjct: 554 K 554
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Signal transducer of the phototropic response and photo-induced movements. Involved in the phot1 pathway under low blue light (LBL) fluence rate and in the phot2 pathway under higher fluence rate of blue light (HBL). Necessary for root and hypocotyl phototropisms, but not for the regulation of stomata opening. Not involved in chloroplast accumulation and translocation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFU0|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1 Back     alignment and function description
>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
225464091 674 PREDICTED: root phototropism protein 3 [ 0.927 0.660 0.84 0.0
224095855 676 predicted protein [Populus trichocarpa] 0.927 0.658 0.847 0.0
449524605 613 PREDICTED: LOW QUALITY PROTEIN: root pho 0.889 0.696 0.861 0.0
449438761 675 PREDICTED: root phototropism protein 3-l 0.925 0.657 0.832 0.0
224141185 672 predicted protein [Populus trichocarpa] 0.920 0.657 0.837 0.0
147838167 665 hypothetical protein VITISV_002200 [Viti 0.908 0.655 0.835 0.0
255563230 663 hypothetical protein RCOM_0884570 [Ricin 0.902 0.653 0.864 0.0
356554757 672 PREDICTED: root phototropism protein 3-l 0.877 0.626 0.825 0.0
357476259 669 Root phototropism protein [Medicago trun 0.879 0.630 0.8 0.0
356547450501 PREDICTED: root phototropism protein 3-l 0.895 0.858 0.824 0.0
>gi|225464091|ref|XP_002269380.1| PREDICTED: root phototropism protein 3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/450 (84%), Positives = 408/450 (90%), Gaps = 5/450 (1%)

Query: 26  MLLLIFQVTF-LFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAK 84
            L+ I  V+F L K  +L    +RSGKMNR+IYES +++LNKI  DDLPGGPEAFELAAK
Sbjct: 48  FLVQIGDVSFHLHKYPLL----SRSGKMNRIIYESHNADLNKIAFDDLPGGPEAFELAAK 103

Query: 85  FCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKS 144
           FCYGIAVDLTA+NISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKS
Sbjct: 104 FCYGIAVDLTAANISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKS 163

Query: 145 CEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQ 204
           CEKLSPWAENLQIVRRCSESIAWKACANPKGI+WAYTG+P K+SSPKWN+MKDSSPSR Q
Sbjct: 164 CEKLSPWAENLQIVRRCSESIAWKACANPKGIKWAYTGKPLKVSSPKWNEMKDSSPSRGQ 223

Query: 205 PVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTAD 264
            VPPDWWFEDVSILRIDHFVRV+TAIKVKGMRFELIGA+IM YA KWL GLI+E  GT  
Sbjct: 224 QVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGASIMQYATKWLPGLIKEGMGTGM 283

Query: 265 EISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSC 324
                ++SN +   SSWKGGL M+VAG KDDPPTVQAKDQRMIIESLISIIPPQKDSVSC
Sbjct: 284 GDEGSNSSNGSSGSSSWKGGLQMVVAGAKDDPPTVQAKDQRMIIESLISIIPPQKDSVSC 343

Query: 325 SFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLL 384
           SFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIP+Y+K ETLYDVDLVQRLL
Sbjct: 344 SFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPSYNKSETLYDVDLVQRLL 403

Query: 385 EHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLT 444
           EHFLVQEQT+SSSPSRQ F +KH+Y+ +QRGNG++AKMRVARLVD YLTEV+RDRNLSLT
Sbjct: 404 EHFLVQEQTDSSSPSRQPFPEKHLYEGTQRGNGSNAKMRVARLVDSYLTEVSRDRNLSLT 463

Query: 445 KFQVLAEALPESARTCDDGLYRAIDSYLKV 474
           KFQVLAEALPESARTCDDGLYRAIDSYLK 
Sbjct: 464 KFQVLAEALPESARTCDDGLYRAIDSYLKA 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224095855|ref|XP_002310495.1| predicted protein [Populus trichocarpa] gi|222853398|gb|EEE90945.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449524605|ref|XP_004169312.1| PREDICTED: LOW QUALITY PROTEIN: root phototropism protein 3-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449438761|ref|XP_004137156.1| PREDICTED: root phototropism protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224141185|ref|XP_002323955.1| predicted protein [Populus trichocarpa] gi|222866957|gb|EEF04088.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147838167|emb|CAN60915.1| hypothetical protein VITISV_002200 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563230|ref|XP_002522618.1| hypothetical protein RCOM_0884570 [Ricinus communis] gi|223538094|gb|EEF39705.1| hypothetical protein RCOM_0884570 [Ricinus communis] Back     alignment and taxonomy information
>gi|356554757|ref|XP_003545709.1| PREDICTED: root phototropism protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357476259|ref|XP_003608415.1| Root phototropism protein [Medicago truncatula] gi|355509470|gb|AES90612.1| Root phototropism protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356547450|ref|XP_003542125.1| PREDICTED: root phototropism protein 3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
TAIR|locus:2173418 746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.485 0.312 0.762 1.8e-170
TAIR|locus:2028160 665 AT1G30440 [Arabidopsis thalian 0.443 0.320 0.420 1.3e-78
TAIR|locus:2143558 592 AT5G03250 [Arabidopsis thalian 0.420 0.341 0.441 1.6e-75
TAIR|locus:2158182 579 NPY3 "NAKED PINS IN YUC MUTANT 0.489 0.405 0.411 5.2e-75
TAIR|locus:2156524 614 AT5G48800 [Arabidopsis thalian 0.418 0.327 0.434 2.5e-71
TAIR|locus:2046961 634 NPY2 "NAKED PINS IN YUC MUTANT 0.414 0.313 0.416 3.7e-69
TAIR|locus:2173204 591 AT5G13600 [Arabidopsis thalian 0.472 0.384 0.38 4.3e-69
TAIR|locus:504954965 604 AT5G67385 [Arabidopsis thalian 0.416 0.331 0.438 4.9e-69
TAIR|locus:2082132 651 AT3G44820 [Arabidopsis thalian 0.847 0.625 0.380 7.2e-68
TAIR|locus:2120125580 NPY5 "NAKED PINS IN YUC MUTANT 0.443 0.367 0.406 5.6e-65
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 962 (343.7 bits), Expect = 1.8e-170, Sum P(2) = 1.8e-170
 Identities = 193/253 (76%), Positives = 212/253 (83%)

Query:    26 MLLLIFQVTF-LFKLEMLIFTYTRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAK 84
             +L+ I  + F L K  +L    +RSGKMNRLIYESRD +   ++LDDLPGGPEAFELA+K
Sbjct:    56 LLVKIGDMNFHLHKYPLL----SRSGKMNRLIYESRDPDPTILILDDLPGGPEAFELASK 111

Query:    85 FCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKS 144
             FCYG+ VDLTA+NISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKS
Sbjct:   112 FCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKS 171

Query:   145 CEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKIS-------SPKWNDMKD 197
             CEKLSPWAENLQIVRRCSESIAWKAC+NPKGIRWAYTG+ P  S       SP+WN+ KD
Sbjct:   172 CEKLSPWAENLQIVRRCSESIAWKACSNPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKD 231

Query:   198 SS----PSR---SQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAK 250
             SS    PSR   SQPVPPDWWFEDVSILRIDHFVRV+TAIKVKGMRFEL+GA IMHYA K
Sbjct:   232 SSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELLGAVIMHYAGK 291

Query:   251 WLTGLIRESSGTA 263
             WL GLI+E  G A
Sbjct:   292 WLPGLIKEG-GVA 303
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=ISM;IDA;NAS
GO:0009416 "response to light stimulus" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0009785 "blue light signaling pathway" evidence=IGI;IPI
GO:0016567 "protein ubiquitination" evidence=IMP
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046777 "protein autophosphorylation" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0009638 "phototropism" evidence=IMP
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120125 NPY5 "NAKED PINS IN YUC MUTANTS 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FMF5RPT3_ARATHNo assigned EC number0.71100.88950.5723yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00001901001
SubName- Full=Chromosome undetermined scaffold_123, whole genome shotgun sequence; (674 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
pfam03000249 pfam03000, NPH3, NPH3 family 1e-100
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  301 bits (772), Expect = e-100
 Identities = 122/268 (45%), Positives = 163/268 (60%), Gaps = 46/268 (17%)

Query: 208 PDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEIS 267
            DWWFED+S L ID F RV+TA+K +G++ E+IG A+MHYA KWL GL R  S   D   
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRSGSSEED--- 57

Query: 268 SYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFL 327
                                             ++QR ++E+++S++P +K SVSCSFL
Sbjct: 58  --------------------------------SEEEQRALLETIVSLLPSEKGSVSCSFL 85

Query: 328 LRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPA-YSKGETLYDVDLVQRLLEH 386
            +LLR A +L  + +   ELE+R+G+Q +QATL DLLIP+ YS  ETLYDVDLVQR+LE 
Sbjct: 86  FKLLRAAIILGASESCREELERRIGLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEV 145

Query: 387 FLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKF 446
           FL ++    SS            + S+    +S+ ++VA+LVDGYL E+A D NL L+KF
Sbjct: 146 FLSRDAATQSSDD----------EDSEASPSSSSLLKVAKLVDGYLAEIAPDPNLKLSKF 195

Query: 447 QVLAEALPESARTCDDGLYRAIDSYLKV 474
             LAEA+P+SAR   DGLYRAID YLK 
Sbjct: 196 IALAEAVPDSARPSHDGLYRAIDIYLKA 223

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.24
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.15
PHA03098534 kelch-like protein; Provisional 99.12
PHA02790480 Kelch-like protein; Provisional 99.06
PHA02713557 hypothetical protein; Provisional 99.04
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 98.99
KOG4350 620 consensus Uncharacterized conserved protein, conta 97.55
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 97.09
KOG4682488 consensus Uncharacterized conserved protein, conta 96.66
KOG0783 1267 consensus Uncharacterized conserved protein, conta 96.35
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 95.76
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 94.87
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 92.75
KOG3473112 consensus RNA polymerase II transcription elongati 86.35
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=8.7e-82  Score=622.26  Aligned_cols=236  Identities=54%  Similarity=0.877  Sum_probs=204.4

Q ss_pred             CCcchhhcccCChhhHHHHHHHHHHhCCChhhHHHHHHHHHHHhhhcccccCCCCcccccccccCCCCCCCCCCCCCcce
Q 011665          208 PDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHM  287 (480)
Q Consensus       208 ~dWW~eDl~~L~i~~f~rVi~am~~rg~~~~~I~~~l~~Ya~k~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (480)
                      +|||||||+.|++++|+|||.+|+++||+|++||++|++||+||||++.+.......                       
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~-----------------------   57 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSS-----------------------   57 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccc-----------------------
Confidence            489999999999999999999999999999999999999999999998664221100                       


Q ss_pred             eecCCCCCCcchhhhhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhcccCcccccccc
Q 011665          288 IVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPA  367 (480)
Q Consensus       288 ~~~~~~~~~~~~~~~~qr~llEtIV~LLP~ek~svsc~FLf~LLR~A~~l~as~~cr~~LE~RIg~QLd~AtldDLLIPs  367 (480)
                           ..........+||.+||+||+|||.+|+++||+|||+|||+|+++++|+.||.+||+|||+|||||||||||||+
T Consensus        58 -----~~~~~~~~~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~  132 (258)
T PF03000_consen   58 -----SAESSTSSENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS  132 (258)
T ss_pred             -----cccccchhHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence                 011223345699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCCCcccchHHHHHHHHHHHhcccccCCCCCccccccccccccccCCCCchhHHHHHHhhhhhhhhccCCCCCChhHH
Q 011665          368 Y-SKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKF  446 (480)
Q Consensus       368 ~-~~~~tlYDVDlV~Ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVakLvD~YLaEVA~D~nL~~sKF  446 (480)
                      . +..+|+||||+|+|||++||.+++..+.......        .....++.+++.+||||||+||+|||+|+||||+||
T Consensus       133 ~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~--------~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF  204 (258)
T PF03000_consen  133 SPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESES--------ESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKF  204 (258)
T ss_pred             CCCcccchhhHHHHHHHHHHHHhccccccccccccc--------ccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence            4 4666999999999999999998664331110000        011246788999999999999999999999999999


Q ss_pred             HHHHHhcCCCcccCCCChhHHHHHhhhccCCCC
Q 011665          447 QVLAEALPESARTCDDGLYRAIDSYLKVISNFC  479 (480)
Q Consensus       447 ~~Lae~lPd~AR~~hDgLYRAIDiYLKaHp~L~  479 (480)
                      ++|||++|++||++|||||||||||||+||+|-
T Consensus       205 ~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls  237 (258)
T PF03000_consen  205 VALAEALPDSARPSHDGLYRAIDIYLKAHPGLS  237 (258)
T ss_pred             HHHHHHCCHhhhhccchHHHHHHHHHHHcccCC
Confidence            999999999999999999999999999999973

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 92/581 (15%), Positives = 167/581 (28%), Gaps = 163/581 (28%)

Query: 27  LLLIFQVTFLFKLEML-IFTYTR---SGKMNRLIYESRDSELN-KIVLDDLPGGPEAFEL 81
           +L +F+  F+   +   +    +   S +    I  S+D+      +   L    E  E+
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EM 78

Query: 82  AAKFC-------YG-IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLS 133
             KF        Y  +   +             Y+E  + L   N     + F  Y V  
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-----QVFAKYNV-- 131

Query: 134 SWR-DSIIVLKSC-EKLSPWAENLQI--VRRCSESI-AWKACANPK-------GIRWAYT 181
             R    + L+    +L P A+N+ I  V    ++  A   C + K        I W   
Sbjct: 132 -SRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 182 GRPPKISS-------------PKWNDMKDSSPSRSQPVPPDWWFEDVS------------ 216
                  +             P W    D S +    +       ++             
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLKSKPYENCL 247

Query: 217 -ILR-------IDHF-----VRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSG-T 262
            +L         + F     + + T  + K +   L  A   H +      L   S   T
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHIS------LDHHSMTLT 299

Query: 263 ADEISSYSASNSNGSCSS-----WKGG---LHMIVAGMKDDPPT------VQAKDQRMII 308
            DE+ S      +                 L +I   ++D   T      V       II
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 309 ESLISIIPP---QKDSVSCS-F---------LLRLLRMANMLKVAPALVTELEKRV---- 351
           ES ++++ P   +K     S F         LL L+    +      +V +L K      
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 352 ----------GMQFE-------QATLADLLIPAYSKGETLYDVDLVQRLLE--------- 385
                      +  E       +  L   ++  Y+  +T    DL+   L+         
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 386 HFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVA--------RLVDGYLT--EV 435
           H    E  E  +  R  F D    +   R + T+     +        +    Y+   + 
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 436 ARDRNL-SLTKF-QVLAEALPESARTC---------DDGLY 465
             +R + ++  F   + E L  S  T          D+ ++
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.55
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.49
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.48
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.48
2vpk_A116 Myoneurin; transcription regulation, transcription 99.48
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.47
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.46
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.46
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.44
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.43
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.43
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.43
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.42
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.42
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.38
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.38
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.37
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.35
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.34
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.21
4ajy_C97 Transcription elongation factor B polypeptide 1; E 98.36
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 98.29
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 97.81
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 97.35
2fnj_C96 Transcription elongation factor B polypeptide 1; b 97.01
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 96.97
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 96.52
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 95.89
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=99.55  E-value=9.7e-15  Score=143.07  Aligned_cols=233  Identities=10%  Similarity=0.120  Sum_probs=161.1

Q ss_pred             hHHHHhhhhhhhccccceEEEEEe---eeEEeccchhhhccchHHHHHHhccc-CCCCcceEEecCC----CCCHHHHHH
Q 011665           10 NLVSRLMGLSLEANLGMLLLIFQV---TFLFKLEMLIFTYTRSGKMNRLIYES-RDSELNKIVLDDL----PGGPEAFEL   81 (480)
Q Consensus        10 ~~~~~~~~~~~~~~l~~v~li~~~---~~~f~~h~~~lL~s~Sg~l~rl~~~~-~~~~~~~i~L~d~----PGGaeaFEl   81 (480)
                      ++..++...-.++.+|||+|+ |+   |..|++||.+| +++|.||++|+.+. .++...+|+|+++    .-.+++|+.
T Consensus        18 ~ll~~l~~l~~~~~~~Dv~l~-v~~~~~~~f~~Hr~vL-aa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~   95 (279)
T 3i3n_A           18 ELSWRQNEQRRQGLFCDITLC-FGGAGGREFRAHRSVL-AAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEA   95 (279)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEE-CC----CEEEECHHHH-HHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCeEEE-EcCCCCeEEehHHHHH-HHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHH
Confidence            345666677777889999999 87   99999999976 99999999999876 4556678999866    446799999


Q ss_pred             HHHHhcCcceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhhhccCChHHHHHHHhhhcccchhhhhhc---hH
Q 011665           82 AAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQ---IV  158 (480)
Q Consensus        82 ~akFCYg~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~~vl~sW~dsi~vL~sCe~Llp~AE~l~---IV  158 (480)
                      +.+|+|++++.+++.||..+..||.+|+|.      .|...++.||.+.+-.  .       .|-.++.+|+..+   +.
T Consensus        96 ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~------~L~~~c~~~L~~~l~~--~-------n~~~i~~~A~~~~~~~L~  160 (279)
T 3i3n_A           96 VIEYMYTGRIRVSTGSVHEVLELADRFLLI------RLKEFCGEFLKKKLHL--S-------NCVAIHSLAHMYTLSQLA  160 (279)
T ss_dssp             HHHHHHHSEEEEETTTHHHHHHHHHHTTCH------HHHHHHHHHHHHHCCT--T-------THHHHHHHHHHTTCHHHH
T ss_pred             HHHhhCcCCcccCHHHHHHHHHHHHHHCcH------HHHHHHHHHHHHcCCc--c-------hHHHHHHHHHHcCcHHHH
Confidence            999999999999999999999999999997      4889999999886532  2       3444455565543   67


Q ss_pred             HHHHHHHHHHHccCCCCccCcccCCCCCCCCCCcCcCCCCCCCCCCCCCCCcchhhcccCChhhHHHHHHHHHHhC--C-
Q 011665          159 RRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKG--M-  235 (480)
Q Consensus       159 ~RCidaLa~ka~~d~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~i~~f~rVi~am~~rg--~-  235 (480)
                      .+|.+-|......    +                                 +--++...|+.+....++.   +..  + 
T Consensus       161 ~~~~~~i~~~f~~----v---------------------------------~~~~~f~~L~~~~l~~lL~---~d~L~v~  200 (279)
T 3i3n_A          161 LKAADMIRRNFHK----V---------------------------------IQDEEFYTLPFHLIRDWLS---DLEITVD  200 (279)
T ss_dssp             HHHHHHHHHTHHH----H---------------------------------TTSSGGGGSCHHHHHHHHT---CSSCCCS
T ss_pred             HHHHHHHHHHHHH----H---------------------------------hcCcChhcCCHHHHHHHhc---CcCCCCC
Confidence            7787777653211    1                                 0014556788877776654   332  3 


Q ss_pred             ChhhHHHHHHHHHHHhhhcccccCCCCcccccccccCCCCCCCCCCCCCcceeecCCCCCCcchhhhhhHHHHHHHHHhC
Q 011665          236 RFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISII  315 (480)
Q Consensus       236 ~~~~I~~~l~~Ya~k~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtIV~LL  315 (480)
                      +.+.|..+++.|++.-.+                                                 ..+..+..+...+
T Consensus       201 sE~~vf~av~~W~~~~~~-------------------------------------------------~r~~~~~~ll~~V  231 (279)
T 3i3n_A          201 SEEVLFETVLKWVQRNAE-------------------------------------------------ERERYFEELFKLL  231 (279)
T ss_dssp             CHHHHHHHHHHHHHTTHH-------------------------------------------------HHTTTHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHcCHH-------------------------------------------------HHHHHHHHHHHhc
Confidence            466777777766653111                                                 1112223333322


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 011665          316 PPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKR  350 (480)
Q Consensus       316 P~ek~svsc~FLf~LLR~A~~l~as~~cr~~LE~R  350 (480)
                      -  =..+|..+|..+++..-.+..++.|+.-+..-
T Consensus       232 R--f~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea  264 (279)
T 3i3n_A          232 R--LSQMKPTYLTRHVKPERLVANNEVCVKLVADA  264 (279)
T ss_dssp             C--GGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred             C--CCCCCHHHHHHHhhccchhcCCHHHHHHHHHH
Confidence            1  13478999999888877788889998776543
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.53
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.52
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 96.22
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 94.48
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 87.08
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 86.38
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.9e-15  Score=125.84  Aligned_cols=110  Identities=17%  Similarity=0.272  Sum_probs=92.9

Q ss_pred             hHHHHhhhhhhhccccceEEEEEeeeEEeccchhhhccchHHHHHHhcccCC-CCcceEEecCCCCCHHHHHHHHHHhcC
Q 011665           10 NLVSRLMGLSLEANLGMLLLIFQVTFLFKLEMLIFTYTRSGKMNRLIYESRD-SELNKIVLDDLPGGPEAFELAAKFCYG   88 (480)
Q Consensus        10 ~~~~~~~~~~~~~~l~~v~li~~~~~~f~~h~~~lL~s~Sg~l~rl~~~~~~-~~~~~i~L~d~PGGaeaFEl~akFCYg   88 (480)
                      +|..++...-.++.+||++|+ ++|..|++||.+| +++|+||++++.+... .....+.+.+++  |++|+.+.+|+|+
T Consensus        11 ~ll~~l~~l~~~~~~~Dv~l~-v~~~~~~~Hk~vL-a~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Yt   86 (122)
T d1r29a_          11 DVLLNLNRLRSRDILTDVVIV-VSREQFRAHKTVL-MACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYT   86 (122)
T ss_dssp             HHHHHHHHHHHTTCSCCEEEE-ETTEEEEECHHHH-HHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEEE-ECCEEEEEehHHh-hhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcC
Confidence            456667777778889999999 9999999999976 9999999999987633 333334445655  5999999999999


Q ss_pred             cceecCcChHHHHHHhHHHhcCcccccCCChHHHHHHHhhh
Q 011665           89 IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY  129 (480)
Q Consensus        89 ~~i~it~~NVa~LrCAAe~LeMte~~~~gNLi~ktE~fL~~  129 (480)
                      ++++++..||..+..||++|+|.      .|...++.||..
T Consensus        87 g~~~i~~~~v~~ll~~A~~l~i~------~L~~~C~~~L~~  121 (122)
T d1r29a_          87 SRLNLREGNIMAVMATAMYLQME------HVVDTCRKFIKA  121 (122)
T ss_dssp             SCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHHT
T ss_pred             CeecCchhhHHHHHHHHHHHCcH------HHHHHHHHHHHh
Confidence            99999999999999999999997      588999999875
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure