Citrus Sinensis ID: 011716
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LSE8 | 521 | Putative peptide/nitrate | yes | no | 0.991 | 0.911 | 0.586 | 1e-164 | |
| Q9LSF0 | 515 | Probable peptide/nitrate | no | no | 0.970 | 0.902 | 0.553 | 1e-153 | |
| Q8VYE4 | 567 | Probable peptide/nitrate | no | no | 0.995 | 0.841 | 0.429 | 1e-106 | |
| Q8H157 | 585 | Nitrate transporter 1.2 O | no | no | 0.997 | 0.817 | 0.413 | 1e-105 | |
| Q9FM20 | 589 | Probable peptide/nitrate | no | no | 0.983 | 0.799 | 0.399 | 1e-102 | |
| Q93VV5 | 591 | Probable peptide/nitrate | no | no | 0.960 | 0.778 | 0.391 | 6e-91 | |
| Q56XQ6 | 601 | Probable peptide/nitrate | no | no | 0.983 | 0.783 | 0.409 | 7e-91 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.972 | 0.789 | 0.351 | 4e-82 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.983 | 0.826 | 0.349 | 1e-81 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.956 | 0.840 | 0.337 | 2e-77 |
| >sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis thaliana GN=At3g25280 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 577 bits (1488), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/486 (58%), Positives = 362/486 (74%), Gaps = 11/486 (2%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
+VF++N NFV YF+ SMHY A +A MV NFMGTSFLLT+FGGFI+DSF+T FTTFI+F
Sbjct: 40 IVFIANGFNFVKYFMGSMHYTPATAANMVTNFMGTSFLLTLFGGFIADSFVTHFTTFIVF 99
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
C IEL+GLILLT QA +L P ++ PS Q+AIL+TGLYAMA G GG+KA+LP+HG D
Sbjct: 100 CCIELMGLILLTFQAHNPKLLPEKDKTPSTLQSAILFTGLYAMAIGTGGLKASLPSHGGD 159
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q+D N RLIS FF+W +FS+C+G L+A TV++WIEE +GW SF IS L ALCIFT
Sbjct: 160 QIDRRNPRLISRFFDWLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGILATALCIFT 219
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRKAS--RSEMTEQIASPGATRSNDMFRVLDK 238
+G P YR+KRP+GSP+ +I VI SA RNR S EM + S S++ + +DK
Sbjct: 220 VGLPFYRFKRPNGSPLKKIAIVIISAARNRNKSDLDEEMMRGLISIYKNNSHNKLKWIDK 279
Query: 239 ALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTI-NNFKIP 297
A + I+ +VEET+TFLGLLPIF STI+M+CC+AQL TFS QQG++MN+ + ++F+IP
Sbjct: 280 ATLNKNISETEVEETRTFLGLLPIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIP 339
Query: 298 TQSLTVFPLTIMLASIPLYERSVHIFERKI---SAKYNIFRPLKRIGLGLALASGSMAVA 354
SLT PL ML SIPLYE F +KI + + LKRIGLGLAL+S SMAV+
Sbjct: 340 VPSLTAIPLIFMLLSIPLYE----FFGKKISSGNNNRSSSFNLKRIGLGLALSSVSMAVS 395
Query: 355 AVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTAL 413
A+VE+ R+ N+ +SV WLV+QYL+L VSDMLTLGGMLEFFY EAP +M+SISTAL
Sbjct: 396 AIVEAKRKHEVVHNNFRISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTAL 455
Query: 414 SWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYI 473
WCST++G+FLS+ LV +TN V+G+ G +WLGG DLN RL+LFY LLC+LN +N LNYI
Sbjct: 456 GWCSTALGFFLSTTLVEVTNAVTGRLGHQWLGGEDLNKTRLELFYVLLCVLNTLNLLNYI 515
Query: 474 YWAKRY 479
+WAKRY
Sbjct: 516 FWAKRY 521
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis thaliana GN=At3g25260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/490 (55%), Positives = 360/490 (73%), Gaps = 25/490 (5%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
MVFL+ + NF+ YF KSM+Y ++A MV NF+GTSFLLTIFGGF++DSFLTRF F+LF
Sbjct: 40 MVFLACSTNFMMYFTKSMNYSTPKAATMVTNFVGTSFLLTIFGGFVADSFLTRFAAFVLF 99
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
+IELLGLI+LT+QA ++LQP ++PS Q+ +L+TGLYA+A GVGGVK +LPAHG D
Sbjct: 100 GSIELLGLIMLTLQAHITKLQPQGGKKPSTPQSTVLFTGLYAIAIGVGGVKGSLPAHGGD 159
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q+ N+RLIS FFNW+FFS+C GG +A T+MVWIEEN GW+ SF IS L A+ +F
Sbjct: 160 QIGTRNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASAIFVFV 219
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSE---MTEQIASPGATRSNDMFRVLD 237
G P+YR+KRP+GSP+TRI V SA RNR ++ +T+ S + ++ F+ L+
Sbjct: 220 AGCPMYRFKRPAGSPLTRIVNVFVSAARNRNRFVTDAEVVTQNHNSTDKSIHHNKFKFLN 279
Query: 238 KALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTIN-NFKI 296
KA ++ I+A QVEET+TFL LLPIF STI+MNCC+AQ+ TFSVQQG++ NR ++ +F+I
Sbjct: 280 KAKLNNKISATQVEETRTFLALLPIFGSTIIMNCCVAQMGTFSVQQGMVTNRKLSRSFEI 339
Query: 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKI------SAKYNIFRPLKRIGLGLALASGS 350
P SL PL ML+S+ LYE +F ++I S+ +N LKRIG GLAL S S
Sbjct: 340 PVASLNAIPLLCMLSSLALYE----LFGKRILSNSERSSSFN----LKRIGYGLALTSIS 391
Query: 351 MAVAAVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409
MAVAA+VE R+ A N++ +SVFWL Q+++L +SDMLT+GGMLEFF+ E+P SMRS+
Sbjct: 392 MAVAAIVEVKRKHEAVHNNIKISVFWLELQFVMLSLSDMLTVGGMLEFFFRESPASMRSM 451
Query: 410 STALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINF 469
STAL WCST+MG+FLSS LV + N ++G WL +DLN +RL+LFY +LC+LN +N
Sbjct: 452 STALGWCSTAMGFFLSSVLVEVVNGITG-----WL-RDDLNESRLELFYLVLCVLNTLNL 505
Query: 470 LNYIYWAKRY 479
NYI+WAKRY
Sbjct: 506 FNYIFWAKRY 515
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/515 (42%), Positives = 313/515 (60%), Gaps = 38/515 (7%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
+ FL+NA N V Y MH A S+ V FM T+FLL + GGF++D+F + F F++
Sbjct: 46 LAFLANASNLVLYLKNFMHMSLARSSSEVTTFMATAFLLALLGGFLADAFFSTFVIFLIS 105
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSH--------TQAAILYTGLYAMATGVGGVKA 112
+IE LGLILLTIQA+ L P + + ++AA L+ GLY ++ G+GG+K
Sbjct: 106 ASIEFLGLILLTIQARRPSLMPPPCKSSAALRCEVVGGSKAAFLFVGLYLVSLGIGGIKG 165
Query: 113 ALPAHGADQLDH---SNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISA 169
+LP+HGA+Q D R+ S FFN++ F L G LVA T +VWIE+N+GW F +S
Sbjct: 166 SLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVST 225
Query: 170 VALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAI---------RNRKASRSEMTE- 219
+++ L++ +F +G Y+ K P GSP+T IFKV+ +A N SR +E
Sbjct: 226 ISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAASIVSCSSKTSSNHFTSREVQSEH 285
Query: 220 QIASPGATRSNDMFRVLDKALFDDT------ITAAQVEETKTFLGLLPIFASTIMMNCCL 273
+ +P + +N + L+KA+ T T QVE+ K L +LPIF TIM+NCCL
Sbjct: 286 EEKTPSQSLTNSL-TCLNKAIEGKTHHIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCL 344
Query: 274 AQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNI 333
AQL T+SV Q MNR I NF +P+ SL VFP+ ML P Y+ + F RK++
Sbjct: 345 AQLSTYSVHQAATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIG 404
Query: 334 FRPLKRIGLGLALASGSMAVAAVVESTRRAAA--------ENHVTLSVFWLVWQYLLLGV 385
L+RIG+GL L+ +MAVAA+VE R+ A E + ++ W+ QYL LG
Sbjct: 405 ITHLQRIGVGLVLSIVAMAVAALVELKRKQVAREAGLLDSEETLPITFLWIALQYLFLGS 464
Query: 386 SDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFG-GEWL 444
+D+ TL G+LEFF++EAP SMRS++T+LSW S ++GY+LSS +V I N V+ G WL
Sbjct: 465 ADLFTLAGLLEFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWL 524
Query: 445 GGNDLNHARLDLFYALLCILNFINFLNYIYWAKRY 479
G LN RLDLFY L+C+L+ +NFL+Y++WAKRY
Sbjct: 525 G-EKLNRNRLDLFYWLMCVLSVVNFLHYLFWAKRY 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 221/534 (41%), Positives = 317/534 (59%), Gaps = 56/534 (10%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
+ +L+NA N V Y + MH ++SA V NFMGT+FLL + GGF+SD+F + F F++
Sbjct: 44 LAYLANASNLVLYLREYMHMSPSKSANDVTNFMGTAFLLALLGGFLSDAFFSTFQIFLIS 103
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRP-----SHTQAAILYTGLYAMATGVGGVKAALP 115
+IE LGLI+LTIQA+ L P P S ++AA+L+ GLY +A GVGG+K +L
Sbjct: 104 ASIEFLGLIILTIQARTPSLMPPSCDSPTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLA 163
Query: 116 AHGADQLDHSN---RRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVAL 172
+HGA+Q D S R+ S FFN+F F L G LVA T +VW+E+N+GW F +S +A+
Sbjct: 164 SHGAEQFDESTPKGRKQRSTFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAI 223
Query: 173 GLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAI------------------------- 207
+++ IF G YR K P GSP+T I KV+ +A
Sbjct: 224 FVSILIFLSGSRFYRNKIPCGSPLTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCV 283
Query: 208 -RNRKASRSE------MTEQIASPGATRSNDMFRVLDKALFDDTI------TAAQVEETK 254
+ +K S+ E+ P A +N + +VL+ A + + T QVE+ K
Sbjct: 284 SKGKKEVESQGELEKPRQEEALPPRAQLTNSL-KVLNGAADEKPVHRLLECTVQQVEDVK 342
Query: 255 TFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIP 314
L +LPIFA TIM+NCCLAQL TFSVQQ MN I + KIP SL +FP+ ++ P
Sbjct: 343 IVLKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAP 402
Query: 315 LYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENH------ 368
+Y+ + F RK + L+RIG+GL L+ +MAVAA+VE R+ A++
Sbjct: 403 IYDHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSK 462
Query: 369 --VTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSS 426
+ ++ W+ QYL LG +D+ TL G+LE+F++EAP SMRS++T+LSW S +MGY+LSS
Sbjct: 463 ETLPVTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSS 522
Query: 427 ALVSITNLVSGKFGG-EWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAKRY 479
+VSI N ++G G WL G +N +LD FY L+C+L+ NFL+Y++WA RY
Sbjct: 523 VIVSIVNSITGSSGNTPWLRGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRY 576
|
Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/516 (39%), Positives = 300/516 (58%), Gaps = 45/516 (8%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
+ FL+NA N V Y M + + +A V FMGT+F L + GGF++D+F T F +++
Sbjct: 75 LAFLANASNLVLYLSTKMGFSPSGAANAVTAFMGTAFFLALLGGFLADAFFTTFHIYLVS 134
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
IE LGL++LT+QA +P L+ GLY +A GVGG+K +LP HGA+
Sbjct: 135 AAIEFLGLMVLTVQAHEHSTEP--------WSRVFLFVGLYLVALGVGGIKGSLPPHGAE 186
Query: 121 QLDH---SNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALC 177
Q D S RR S FFN+F FSL G L+A TV+VW+E+N+GW+ F +S A+ +++
Sbjct: 187 QFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWLEDNKGWSYGFGVSTAAILISVP 246
Query: 178 IFTIGFPIYRYKRPSGSPITRIFKVIASAI----RNRKASR---SEMTEQIASPGATRSN 230
+F G +YR K PSGSPIT +FKV+ +A+ + R+ SR + T T+ N
Sbjct: 247 VFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRRTSRIVVTCHTRNDCDDSVTKQN 306
Query: 231 -------------DMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQ 277
++ R + T QV++ K + +LPIF STIM+NCCLAQL
Sbjct: 307 CDGDDGFLGSFLGEVVRERESLPRPLRCTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLS 366
Query: 278 TFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPL 337
TFSVQQ MN + +F +P +L VFP+ M+ P Y + RK + L
Sbjct: 367 TFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAPTYNHLLLPLARKSTKTETGITHL 426
Query: 338 KRIGLGLALASGSMAVAAVVESTRR-------------AAAENHVTLSVFWLVWQYLLLG 384
+RIG GL L+ +MAVAA+VE+ R+ + + + + ++ W+ QY+ LG
Sbjct: 427 QRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLG 486
Query: 385 VSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSG-KFGGEW 443
+D+ TL GM+EFF++EAP +MRS++T+LSW S +MGY+ SS LVS N V+G W
Sbjct: 487 SADLFTLAGMMEFFFTEAPSTMRSLATSLSWASLAMGYYFSSVLVSAVNFVTGLNHHNPW 546
Query: 444 LGGNDLNHARLDLFYALLCILNFINFLNYIYWAKRY 479
L G +LN L+ FY L+C+L+ INFL+Y++WA RY
Sbjct: 547 LLGENLNQYHLERFYWLMCVLSGINFLHYLFWASRY 582
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 201/514 (39%), Positives = 294/514 (57%), Gaps = 54/514 (10%)
Query: 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGL 68
N + Y + MH+P +++A +V NF+GT F+ + GG++SD+FL F T I+F +EL G
Sbjct: 68 NLITYVINEMHFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGF 127
Query: 69 ILLTIQAQYSRLQPAM-NRRPSHT-------QAAILYTGLYAMATGVGGVKAALPAHGAD 120
ILL++QA +L+P N T +A I + LY +A G G VK + AHGAD
Sbjct: 128 ILLSVQAHLPQLKPPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGAD 187
Query: 121 QLDHSN---RRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALC 177
Q S+ + +S++FN +F+ G L+A T++VW++ + G + F +SA A+ + +
Sbjct: 188 QFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGII 247
Query: 178 IFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATR--------S 229
G +R KRP S T I VI +AI RK +ASP R +
Sbjct: 248 SLVSGTMYFRNKRPRRSIFTPIAHVIVAAILKRK---------LASPSDPRMLHGDHHVA 298
Query: 230 NDM-----------FRVLDKAL--FDDT---------ITAAQVEETKTFLGLLPIFASTI 267
ND+ FR LDKA DT T QVE+ KT + L+PIFASTI
Sbjct: 299 NDVVPSSTLPHTPRFRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVPIFASTI 358
Query: 268 MMNCCLAQLQTFSVQQGIIMN-RTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERK 326
+ N LAQLQTFSVQQG MN R N+F IP SL P +++ +PLY+ + F RK
Sbjct: 359 VFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARK 418
Query: 327 ISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRR-AAAENHVTLSVFWLVWQYLLLGV 385
++ + PL RIG+GL L++ SM AA++E RR ++ + LS+FW+ Q+L+ G+
Sbjct: 419 LTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDSSVLDGRILSIFWITPQFLIFGI 478
Query: 386 SDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKF--GGEW 443
S+M T G++EFFY ++ M S AL++CS S G++ SS LVS+ N ++ W
Sbjct: 479 SEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGW 538
Query: 444 LGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477
LG NDLN RLDLFY LL +L+ +NFL+Y++W++
Sbjct: 539 LGENDLNKDRLDLFYWLLAVLSLLNFLSYLFWSR 572
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 206/503 (40%), Positives = 287/503 (57%), Gaps = 32/503 (6%)
Query: 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGL 68
N + Y MH+P ++SA +V NF+GT FLL++ GGF+SDS+L F T ++F IE+ G
Sbjct: 65 NLITYVFNEMHFPLSKSANLVTNFIGTVFLLSLLGGFLSDSYLGSFRTMLVFGVIEISGF 124
Query: 69 ILLTIQAQYSRLQPAMNRRPSHT---------QAAILYTGLYAMATGVGGVKAALPAHGA 119
ILL++QA L+P S T +AA LYT L +A G G +K + +HGA
Sbjct: 125 ILLSVQAHLPELRPPECNMKSTTIHCVEANGYKAATLYTALCLVALGSGCLKPNIISHGA 184
Query: 120 DQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIF 179
+Q + R +S+FFN +F+ G L+A T++VW++ + G + F +SA + +
Sbjct: 185 NQFQRKDLRKLSSFFNAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISL 244
Query: 180 TIGFPIYRYKRPSGSPITRIFKVIASAIRNRK---ASRSEMTEQIASP----GATRSNDM 232
G YR K PSGS T I +V +AI RK S M Q ++ ++
Sbjct: 245 VAGTSFYRNKPPSGSIFTPIAQVFVAAITKRKQICPSNPNMVHQPSTDLVRVKPLLHSNK 304
Query: 233 FRVLDKALFDDT----------ITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQ 282
FR LDKA T QV + K L ++PIFA TI+ N LAQLQTFSVQ
Sbjct: 305 FRFLDKACIKTQGKAMESPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTFSVQ 364
Query: 283 QGIIMNRTI-NNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIG 341
QG MN I F+IP SL P I++ +PLYE RK++ + PL+RIG
Sbjct: 365 QGSSMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQRIG 424
Query: 342 LGLALASGSMAVAAVVESTRRAA-AENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYS 400
GL LA+ SM AA+VE RR + E +V LS+FW+ Q+L+ G+S+M T G++EFFY
Sbjct: 425 TGLFLATFSMVAAALVEKKRRESFLEQNVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYK 484
Query: 401 EAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGG----EWLGGNDLNHARLDL 456
++ SM+S TA+++CS S G++LSS LVS N V+ G WLG NDLN RLD
Sbjct: 485 QSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLDH 544
Query: 457 FYALLCILNFINFLNYIYWAKRY 479
FY LL L+FINF NY++W++ Y
Sbjct: 545 FYWLLASLSFINFFNYLFWSRWY 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 176/501 (35%), Positives = 280/501 (55%), Gaps = 35/501 (6%)
Query: 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELL 66
A N + Y+ +H +A V + GT ++ + G I+DS+ R+ T F I +
Sbjct: 77 AKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFI 136
Query: 67 GLILLTIQAQYSRLQPAMNR-------RPSHT-QAAILYTGLYAMATGVGGVKAALPAHG 118
G+ LLT+ A L+PA P+ T Q A+ +TGLY +A G GG+K + + G
Sbjct: 137 GMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 119 ADQLDHSNRR---LISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLA 175
ADQ D ++ R ++FFNWF+FS+ G +++T++VW++EN GW F I V +G++
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 176 LCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKAS----------RSEMTEQIASPG 225
+ F IG P+YR+++P GSPITR+ +V+ +A R K + E IA
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSR 316
Query: 226 ATRSNDMFRVLDKAL-----------FDDT---ITAAQVEETKTFLGLLPIFASTIMMNC 271
+ D ++ LDKA F + T QVEE KT + + PI+AS I+ +
Sbjct: 317 KIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSV 376
Query: 272 CLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKY 331
+Q+ T VQQG MNR I +F+IP S VF I+L SIP+Y+R + F R+ +
Sbjct: 377 LYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIP 436
Query: 332 NIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTL 391
L+R+G+GL L+ S+A AA+VE+ R A++ V +S+FW + QY+L+G++++
Sbjct: 437 KGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDFVAMSIFWQIPQYILMGIAEVFFF 496
Query: 392 GGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNH 451
G +EFFY E+P +MRS+ +AL+ +T++G +LSS ++++ + G + +DLN
Sbjct: 497 IGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNK 556
Query: 452 ARLDLFYALLCILNFINFLNY 472
LD F+ LL L +N Y
Sbjct: 557 GHLDYFFWLLVSLGLVNIPVY 577
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 178/510 (34%), Positives = 280/510 (54%), Gaps = 39/510 (7%)
Query: 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGL 68
N V Y ++ A +A V N+ GT ++ + G FI+D++L R+ T F I + G+
Sbjct: 51 NLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGM 110
Query: 69 ILLTIQAQYSRLQP----AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDH 124
LLT+ A L+P A P+ +Q A+ + LY +A G GG+K + + GADQ D
Sbjct: 111 TLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDE 170
Query: 125 SNRR---LISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFTI 181
++ S+FFNWF+FS+ G L+AATV+VWI+ N GW F + VA+ +A+C F
Sbjct: 171 NDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFF 230
Query: 182 GFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSN----------D 231
G YR +RP GSP+TRIF+VI +A R E + SN D
Sbjct: 231 GSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTD 290
Query: 232 MFRVLDKALFD---DTI-----------TAAQVEETKTFLGLLPIFASTIMMNCCLAQLQ 277
+ DKA + D+I + QVEE K+ + LLP++A+ I+ +Q+
Sbjct: 291 NLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMS 350
Query: 278 TFSVQQGIIMNRTI-NNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRP 336
T V QG M++ + NF+IP+ SL++F +L P+Y++ + RK + F
Sbjct: 351 TMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQ 410
Query: 337 LKRIGLGLALASGSMAVAAVVE-------STRRAAAENHVTLSVFWLVWQYLLLGVSDML 389
L+R+G+GL ++ +M A V+E T A + + +S+FW + QYLL+G +++
Sbjct: 411 LQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVF 470
Query: 390 TLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDL 449
T G LEFFY +AP +MRS+ +ALS + ++G +LS+ LV++ ++ K G ++L
Sbjct: 471 TFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNL 530
Query: 450 NHARLDLFYALLCILNFINFLNYIYWAKRY 479
N LD F+ LL L+F+NFL Y++ +KRY
Sbjct: 531 NRGHLDYFFYLLATLSFLNFLVYLWISKRY 560
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/489 (33%), Positives = 270/489 (55%), Gaps = 31/489 (6%)
Query: 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELL 66
A N + YF +H +A V + GT ++ + G I+D++ R+ T F I
Sbjct: 67 AKNLITYFTNELHETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFT 126
Query: 67 GLILLTIQAQYSRLQPA-----MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQ 121
G++ LT+ A L+PA + + Q+ +L++GLY +A G GG+K + + GADQ
Sbjct: 127 GMVALTLSASVPGLKPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQ 186
Query: 122 LDH---SNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCI 178
D S R ++FFNWF+F++ G V++TV+VWI+EN GW F I V +GLA
Sbjct: 187 FDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMS 246
Query: 179 FTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDK 238
F G P+YR+++P GSPIT + +V+ +A R S ++ E G +N
Sbjct: 247 FFFGTPLYRFQKPRGSPITSVCQVLVAAYRK---SNLKVPEDSTDEGDANTNPW------ 297
Query: 239 ALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPT 298
T QVEE K L L+PI+AS I+ + +Q+ T VQQG M RTI F+IP
Sbjct: 298 ----KLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGLFEIPP 353
Query: 299 QSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVE 358
+L +F +L S+P+Y+R + R+ + F L+R+G+GL ++ S+ AA+VE
Sbjct: 354 ATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVE 413
Query: 359 STRRAAAENH--------VTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSIS 410
+ R A + V L++FW + QY L+G + + G +EFFY ++P SMRS+
Sbjct: 414 TVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLC 473
Query: 411 TALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFL 470
+A + +T++G +LSS ++++ +SGK W+ +++N+ LD F+ LL L +N
Sbjct: 474 SAWALLTTTLGNYLSSLIITLVAYLSGK--DCWIPSDNINNGHLDYFFWLLVSLGSVNIP 531
Query: 471 NYIYWAKRY 479
+++++ +Y
Sbjct: 532 VFVFFSVKY 540
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| 224065427 | 510 | predicted protein [Populus trichocarpa] | 0.995 | 0.935 | 0.730 | 0.0 | |
| 15230829 | 521 | major facilitator protein [Arabidopsis t | 0.991 | 0.911 | 0.586 | 1e-162 | |
| 297831436 | 521 | proton-dependent oligopeptide transport | 0.991 | 0.911 | 0.580 | 1e-160 | |
| 357505025 | 530 | Solute carrier family 15 member [Medicag | 0.985 | 0.890 | 0.570 | 1e-153 | |
| 15230826 | 515 | putative peptide/nitrate transporter [Ar | 0.970 | 0.902 | 0.553 | 1e-151 | |
| 357504933 | 530 | Solute carrier family 15 member [Medicag | 0.989 | 0.894 | 0.560 | 1e-150 | |
| 297831430 | 514 | proton-dependent oligopeptide transport | 0.970 | 0.904 | 0.564 | 1e-149 | |
| 110743801 | 515 | putative nitrate transporter [Arabidopsi | 0.970 | 0.902 | 0.551 | 1e-149 | |
| 357504943 | 564 | Peptide transporter-like protein [Medica | 0.985 | 0.836 | 0.532 | 1e-146 | |
| 297837471 | 512 | hypothetical protein ARALYDRAFT_893503 [ | 0.974 | 0.912 | 0.553 | 1e-143 |
| >gi|224065427|ref|XP_002301812.1| predicted protein [Populus trichocarpa] gi|222843538|gb|EEE81085.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/479 (73%), Positives = 399/479 (83%), Gaps = 2/479 (0%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
+VFLSNA NFVAYF K+MHY +ESA MV NF+GTSFLLTIFGGFI DSF TRF TF++F
Sbjct: 34 LVFLSNATNFVAYFTKTMHYTISESANMVTNFIGTSFLLTIFGGFIGDSFFTRFRTFVVF 93
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
C IELLG+ILLT+QA +RLQPA+ +PS +QAA+L++GLYA+ATGVGG+KA LPAHGAD
Sbjct: 94 CIIELLGMILLTVQAHDTRLQPAVQEKPSSSQAAVLFSGLYAIATGVGGIKATLPAHGAD 153
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q DHS +R IS+FFNWFFFSLC GGL+++T+MVWIEENRGWN SFKIS V LG+ALCIF
Sbjct: 154 QSDHSKQRSISSFFNWFFFSLCIGGLLSSTIMVWIEENRGWNWSFKISVVVLGVALCIFI 213
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKAL 240
GFPIYR+KRP GSPITRI KV ASA RNRK S E I RS+ FR LDKAL
Sbjct: 214 AGFPIYRFKRPGGSPITRILKVFASASRNRKVSSG--LELINDEVGERSHKKFRFLDKAL 271
Query: 241 FDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQS 300
FDDTI+A QV+ET+TFLGLLPIFASTIMMNCCLAQLQTFSV+QG IMNR +NNF+IPTQS
Sbjct: 272 FDDTISAVQVKETRTFLGLLPIFASTIMMNCCLAQLQTFSVEQGSIMNRKLNNFQIPTQS 331
Query: 301 LTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVEST 360
LTVFPL ++LASIPL+E + ++ K+S + I PLKRIGLGLALAS SMAVAA++E
Sbjct: 332 LTVFPLIVVLASIPLFEHLANSYKNKMSENHYILDPLKRIGLGLALASASMAVAAIIEFK 391
Query: 361 RRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSM 420
RR AAEN TLSVFWL QYLLLGVSDMLTL GMLEFFYSEAP SMRS TALSWCSTSM
Sbjct: 392 RREAAENGHTLSVFWLGGQYLLLGVSDMLTLEGMLEFFYSEAPDSMRSFCTALSWCSTSM 451
Query: 421 GYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAKRY 479
GYFLSS LVSI N ++GK EWLGG++LNH RLDLFY +LCILNF+N LNYIYWAK+Y
Sbjct: 452 GYFLSSVLVSIINSITGKLDHEWLGGHNLNHNRLDLFYTILCILNFLNLLNYIYWAKKY 510
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230829|ref|NP_189165.1| major facilitator protein [Arabidopsis thaliana] gi|75273962|sp|Q9LSE8.1|PTR35_ARATH RecName: Full=Putative peptide/nitrate transporter At3g25280 gi|9294185|dbj|BAB02087.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332643483|gb|AEE77004.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/486 (58%), Positives = 362/486 (74%), Gaps = 11/486 (2%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
+VF++N NFV YF+ SMHY A +A MV NFMGTSFLLT+FGGFI+DSF+T FTTFI+F
Sbjct: 40 IVFIANGFNFVKYFMGSMHYTPATAANMVTNFMGTSFLLTLFGGFIADSFVTHFTTFIVF 99
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
C IEL+GLILLT QA +L P ++ PS Q+AIL+TGLYAMA G GG+KA+LP+HG D
Sbjct: 100 CCIELMGLILLTFQAHNPKLLPEKDKTPSTLQSAILFTGLYAMAIGTGGLKASLPSHGGD 159
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q+D N RLIS FF+W +FS+C+G L+A TV++WIEE +GW SF IS L ALCIFT
Sbjct: 160 QIDRRNPRLISRFFDWLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGILATALCIFT 219
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRKAS--RSEMTEQIASPGATRSNDMFRVLDK 238
+G P YR+KRP+GSP+ +I VI SA RNR S EM + S S++ + +DK
Sbjct: 220 VGLPFYRFKRPNGSPLKKIAIVIISAARNRNKSDLDEEMMRGLISIYKNNSHNKLKWIDK 279
Query: 239 ALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTI-NNFKIP 297
A + I+ +VEET+TFLGLLPIF STI+M+CC+AQL TFS QQG++MN+ + ++F+IP
Sbjct: 280 ATLNKNISETEVEETRTFLGLLPIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIP 339
Query: 298 TQSLTVFPLTIMLASIPLYERSVHIFERKI---SAKYNIFRPLKRIGLGLALASGSMAVA 354
SLT PL ML SIPLYE F +KI + + LKRIGLGLAL+S SMAV+
Sbjct: 340 VPSLTAIPLIFMLLSIPLYE----FFGKKISSGNNNRSSSFNLKRIGLGLALSSVSMAVS 395
Query: 355 AVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTAL 413
A+VE+ R+ N+ +SV WLV+QYL+L VSDMLTLGGMLEFFY EAP +M+SISTAL
Sbjct: 396 AIVEAKRKHEVVHNNFRISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTAL 455
Query: 414 SWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYI 473
WCST++G+FLS+ LV +TN V+G+ G +WLGG DLN RL+LFY LLC+LN +N LNYI
Sbjct: 456 GWCSTALGFFLSTTLVEVTNAVTGRLGHQWLGGEDLNKTRLELFYVLLCVLNTLNLLNYI 515
Query: 474 YWAKRY 479
+WAKRY
Sbjct: 516 FWAKRY 521
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831436|ref|XP_002883600.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297831438|ref|XP_002883601.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297329440|gb|EFH59859.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297329441|gb|EFH59860.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/486 (58%), Positives = 357/486 (73%), Gaps = 11/486 (2%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
+VF++N NFV YF+ SMHY A +A MV NFMGTSFLLT+FGGFI+DSFLT FTTFI+F
Sbjct: 40 IVFIANGFNFVKYFMGSMHYSPATAANMVTNFMGTSFLLTLFGGFIADSFLTHFTTFIIF 99
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
C IEL+GLILLT QA +L P + PS Q+ IL+TGLYAMATG GG+KA+LP HG D
Sbjct: 100 CCIELMGLILLTFQAHNPKLLPEKGKTPSTLQSTILFTGLYAMATGTGGIKASLPTHGGD 159
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q+D N RLIS FF+W +FS+C G L+A TV++ IEE +GW SF IS L ALCIFT
Sbjct: 160 QIDRRNPRLISRFFDWLYFSICFGCLLAVTVVLLIEEKKGWKWSFNISVGILATALCIFT 219
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRKAS--RSEMTEQIASPGATRSNDMFRVLDK 238
+G P YR+KRP+GSP+ +I VI SA RNR S EM + ++ + +DK
Sbjct: 220 VGLPFYRFKRPNGSPLKKIAIVIISAARNRNRSDLDEEMMRSLIPFDKNIGHNKLKWIDK 279
Query: 239 ALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTI-NNFKIP 297
A+ + I+ +VEET+TFLGLLPIF STI+M+CC+AQL TFS QQG++MN+ + ++F+IP
Sbjct: 280 AMLNKNISETEVEETRTFLGLLPIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIP 339
Query: 298 TQSLTVFPLTIMLASIPLYE---RSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVA 354
SL PL ML SIPLYE + + + S+ +N LKRIGLGLAL+S SMAVA
Sbjct: 340 VPSLNAIPLIFMLFSIPLYEFFGKRISLGSNNRSSSFN----LKRIGLGLALSSVSMAVA 395
Query: 355 AVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTAL 413
A+VE+ R+ N+ +SV WLV+QYL+L VSDMLTLGGMLEFFY EAP +M+SISTAL
Sbjct: 396 AIVEAKRKHEVVHNNFRISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTAL 455
Query: 414 SWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYI 473
WCST+ G+F+S+ LV +TN V+G+ G +WLGG DLN ARL+LFY LLC+LN +N LNYI
Sbjct: 456 GWCSTAFGFFVSTTLVEVTNAVTGRLGHQWLGGEDLNKARLELFYVLLCVLNTLNLLNYI 515
Query: 474 YWAKRY 479
+WAKRY
Sbjct: 516 FWAKRY 521
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505025|ref|XP_003622801.1| Solute carrier family 15 member [Medicago truncatula] gi|355497816|gb|AES79019.1| Solute carrier family 15 member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/484 (57%), Positives = 366/484 (75%), Gaps = 12/484 (2%)
Query: 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIEL 65
N + V YF KSMHY AES+ MV NF+GT++LL+I GFISDS++TRFTTF++ T++L
Sbjct: 49 NGVTLVDYFFKSMHYSVAESSNMVTNFLGTAYLLSIIWGFISDSYITRFTTFLVSGTLQL 108
Query: 66 LGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHS 125
+GL++LT QAQ LQP N+ PS+ QA L+TGLYA+A G+GG++A L AHGADQLDH+
Sbjct: 109 MGLMMLTYQAQNPNLQPPENKTPSYIQALFLFTGLYAIAAGLGGMRATLAAHGADQLDHN 168
Query: 126 NRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFTIGFPI 185
N+ LIS++F+W+FFSL GGL+A VMV IE+ GW+ SF I LALC F GFP+
Sbjct: 169 NKSLISSYFSWYFFSLITGGLLATCVMVPIEQKYGWSTSFFILLFVASLALCTFVSGFPL 228
Query: 186 YRYKRPSGSPITRIFKVI-----ASAIRNRKAS-----RSEMTEQIASPGATRSNDMFRV 235
YRYKRPSGSP+T+I +VI ++ N K S ++TE + + +S+D F+
Sbjct: 229 YRYKRPSGSPLTQIIQVIYMFTLVTSAGNIKVSTGGSLNHDVTELLLA--GDQSHDKFKF 286
Query: 236 LDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFK 295
L+KAL D I AQV+ETK+F+GLLPIF +TIMMNCC++Q+ TFSVQQG +MNRT++NF
Sbjct: 287 LNKALIDQNIGVAQVKETKSFIGLLPIFVTTIMMNCCVSQILTFSVQQGNLMNRTLHNFT 346
Query: 296 IPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAA 355
IPTQS+ P+ I L I L+E+ + + K ++ ++PL R+G+GLAL S SM VA+
Sbjct: 347 IPTQSIAFVPIIISLTFIILFEQLKKMNKHKDASNPKFYKPLFRMGIGLALVSTSMFVAS 406
Query: 356 VVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSW 415
++ES R A +N TLSVFWL++QY+LLG+SD LTLGGMLEFFYSEAP SM+SI T+LSW
Sbjct: 407 IIESKRLEAFKNGKTLSVFWLLFQYILLGLSDTLTLGGMLEFFYSEAPESMKSICTSLSW 466
Query: 416 CSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475
CS+SMG+F+SS LV+++N +SG+FG EW GG DLNH+RLDLFYALLCI+N +NFL Y+Y+
Sbjct: 467 CSSSMGFFMSSVLVTLSNSISGRFGKEWFGGKDLNHSRLDLFYALLCIINILNFLLYVYF 526
Query: 476 AKRY 479
AKRY
Sbjct: 527 AKRY 530
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230826|ref|NP_189163.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75273964|sp|Q9LSF0.1|PTR34_ARATH RecName: Full=Probable peptide/nitrate transporter At3g25260 gi|9294183|dbj|BAB02085.1| nitrate transporter (NTL1) [Arabidopsis thaliana] gi|332643480|gb|AEE77001.1| putative peptide/nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 271/490 (55%), Positives = 360/490 (73%), Gaps = 25/490 (5%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
MVFL+ + NF+ YF KSM+Y ++A MV NF+GTSFLLTIFGGF++DSFLTRF F+LF
Sbjct: 40 MVFLACSTNFMMYFTKSMNYSTPKAATMVTNFVGTSFLLTIFGGFVADSFLTRFAAFVLF 99
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
+IELLGLI+LT+QA ++LQP ++PS Q+ +L+TGLYA+A GVGGVK +LPAHG D
Sbjct: 100 GSIELLGLIMLTLQAHITKLQPQGGKKPSTPQSTVLFTGLYAIAIGVGGVKGSLPAHGGD 159
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q+ N+RLIS FFNW+FFS+C GG +A T+MVWIEEN GW+ SF IS L A+ +F
Sbjct: 160 QIGTRNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASAIFVFV 219
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSE---MTEQIASPGATRSNDMFRVLD 237
G P+YR+KRP+GSP+TRI V SA RNR ++ +T+ S + ++ F+ L+
Sbjct: 220 AGCPMYRFKRPAGSPLTRIVNVFVSAARNRNRFVTDAEVVTQNHNSTDKSIHHNKFKFLN 279
Query: 238 KALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTIN-NFKI 296
KA ++ I+A QVEET+TFL LLPIF STI+MNCC+AQ+ TFSVQQG++ NR ++ +F+I
Sbjct: 280 KAKLNNKISATQVEETRTFLALLPIFGSTIIMNCCVAQMGTFSVQQGMVTNRKLSRSFEI 339
Query: 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKI------SAKYNIFRPLKRIGLGLALASGS 350
P SL PL ML+S+ LYE +F ++I S+ +N LKRIG GLAL S S
Sbjct: 340 PVASLNAIPLLCMLSSLALYE----LFGKRILSNSERSSSFN----LKRIGYGLALTSIS 391
Query: 351 MAVAAVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409
MAVAA+VE R+ A N++ +SVFWL Q+++L +SDMLT+GGMLEFF+ E+P SMRS+
Sbjct: 392 MAVAAIVEVKRKHEAVHNNIKISVFWLELQFVMLSLSDMLTVGGMLEFFFRESPASMRSM 451
Query: 410 STALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINF 469
STAL WCST+MG+FLSS LV + N ++G WL +DLN +RL+LFY +LC+LN +N
Sbjct: 452 STALGWCSTAMGFFLSSVLVEVVNGITG-----WL-RDDLNESRLELFYLVLCVLNTLNL 505
Query: 470 LNYIYWAKRY 479
NYI+WAKRY
Sbjct: 506 FNYIFWAKRY 515
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357504933|ref|XP_003622755.1| Solute carrier family 15 member [Medicago truncatula] gi|355497770|gb|AES78973.1| Solute carrier family 15 member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/482 (56%), Positives = 357/482 (74%), Gaps = 8/482 (1%)
Query: 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIEL 65
N + V YF KSMHY AES+ MV NF+GT++LL+I GFISDS++TRFTTF++ T++L
Sbjct: 49 NGVTLVDYFFKSMHYSVAESSNMVTNFLGTAYLLSIIWGFISDSYITRFTTFLVSGTLQL 108
Query: 66 LGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHS 125
+GL++LT QAQ LQP+ N+ PS+ QA L+ GLYA+A G+GG++A L AHGADQLD
Sbjct: 109 MGLMMLTYQAQNPNLQPSENKTPSYMQALFLFAGLYAIAAGLGGMRATLAAHGADQLDQR 168
Query: 126 NRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFTIGFPI 185
N+ LIS++F+W+FFSL GGL+A VMV IE+ GW+ SF I LALC F GF +
Sbjct: 169 NKSLISSYFSWYFFSLMTGGLLATCVMVPIEQKYGWSTSFFILLFVASLALCTFVSGFSL 228
Query: 186 YRYKRPSGSPITRIFKVI------ASAIRNRKASRSEMTEQIASP--GATRSNDMFRVLD 237
YRYKRPSGSP+TRI +VI ASA + + + + +S+D F+ L+
Sbjct: 229 YRYKRPSGSPLTRIIQVIYMFTLVASASNIKVLTGGSLNHDVTELLLAGDQSHDKFKFLN 288
Query: 238 KALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIP 297
KAL D I AQV+ETK+F+GLL IF +TIMMNCC++Q+ TFSVQQG +MNRTI NF IP
Sbjct: 289 KALMDQNIDVAQVKETKSFIGLLSIFVTTIMMNCCVSQILTFSVQQGNLMNRTIYNFTIP 348
Query: 298 TQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVV 357
TQS+ P+ I L I L+E+ + + K ++ ++PL R+G+GLAL S SM VA+++
Sbjct: 349 TQSIAFVPIIISLTFIILFEQFKKMNKHKDNSNNKFYKPLFRMGIGLALVSTSMFVASII 408
Query: 358 ESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCS 417
ES R + +N TLSVFWL++QY+LLG+SD LTLGGM+EFFYSEAP SM+SI T+LSWCS
Sbjct: 409 ESKRLESFKNGKTLSVFWLLFQYILLGLSDTLTLGGMIEFFYSEAPESMKSICTSLSWCS 468
Query: 418 TSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477
+SMG+F+SS LV+++N +SG+FG EW GG DLNH+RLDLFYALLCI+N +NFL Y+Y+AK
Sbjct: 469 SSMGFFMSSVLVTLSNSISGRFGKEWFGGKDLNHSRLDLFYALLCIINILNFLLYVYFAK 528
Query: 478 RY 479
RY
Sbjct: 529 RY 530
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831430|ref|XP_002883597.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297329437|gb|EFH59856.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/489 (56%), Positives = 365/489 (74%), Gaps = 24/489 (4%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
MVFL+ + NF+ YF KSM+Y + ++A MV NF+GTSFLLTIFGGF++DSFLTRF +F+LF
Sbjct: 40 MVFLAYSTNFMMYFTKSMNYSSPKAATMVTNFIGTSFLLTIFGGFVADSFLTRFASFVLF 99
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
IELLGLILLT+QA ++LQP ++PS Q+ +L+TGLYA+A GVGGVK +LPAHG D
Sbjct: 100 GFIELLGLILLTLQAHITKLQPQGGKKPSTLQSTVLFTGLYAIAIGVGGVKGSLPAHGGD 159
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
QL N+RLIS FFNW+FFS+C GG +A T+MVWIEEN+GW+ SF IS L A+ IF
Sbjct: 160 QLGTRNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENKGWSSSFNISTAVLASAIFIFV 219
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRK--ASRSEMTEQIASPGATRSNDMFRVLDK 238
+G P+YR+KRP+GSP+TRI V ASA RNR + +E+T+ S + ++ F+ L+K
Sbjct: 220 VGCPMYRFKRPAGSPLTRIVNVFASATRNRNRFVTDAEVTQNHTSTDKSIHHNKFKFLNK 279
Query: 239 ALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTIN-NFKIP 297
A ++ I+A QVEET+TFL LLPIFASTI+MNCC+AQ+ TFSVQQG++ NR ++ +F+IP
Sbjct: 280 AKLNNKISATQVEETRTFLALLPIFASTIVMNCCVAQMGTFSVQQGMVTNRKLSRSFEIP 339
Query: 298 TQSLTVFPLTIMLASIPLYERSVHIFERKI------SAKYNIFRPLKRIGLGLALASGSM 351
SL PL ML+S+ L+E +F ++I S+ +N LKRIG GLAL S SM
Sbjct: 340 VASLNAIPLLCMLSSLALFE----LFGKRIISNSERSSSFN----LKRIGSGLALTSVSM 391
Query: 352 AVAAVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSIS 410
AVA++VE R+ A N++ +SVFWL Q++LL SDMLT+GGMLEFF+ E+P SMRS+S
Sbjct: 392 AVASMVEVKRKHEAVHNNIKISVFWLELQFVLLSFSDMLTVGGMLEFFFRESPASMRSMS 451
Query: 411 TALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFL 470
TAL WCST+MG+FLSS LV + N ++G WL +DLN +RL+LFY +LC+LN +N
Sbjct: 452 TALGWCSTAMGFFLSSVLVEVVNGITG-----WL-RDDLNESRLELFYVVLCVLNTLNLF 505
Query: 471 NYIYWAKRY 479
NYI+WAKRY
Sbjct: 506 NYIFWAKRY 514
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110743801|dbj|BAE99736.1| putative nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/490 (55%), Positives = 358/490 (73%), Gaps = 25/490 (5%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
MVFL+ + NF+ YF KSM+Y ++A MV NF+GTSFLLTIFGGF++DSFLTRF F LF
Sbjct: 40 MVFLACSTNFMMYFTKSMNYSTPKAATMVTNFVGTSFLLTIFGGFVADSFLTRFAAFFLF 99
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
+IELLGLI+LT+QA ++LQP ++PS Q+ +L+TGLYA+A GVGGVK +LPAHG D
Sbjct: 100 GSIELLGLIMLTLQAHITKLQPQGGKKPSTPQSTVLFTGLYAIAIGVGGVKRSLPAHGGD 159
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q+ N+RLIS FFNW+FFS+C GG +A T+MVWIEEN GW+ SF IS L A+ +F
Sbjct: 160 QIGTRNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASAIFVFV 219
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSE---MTEQIASPGATRSNDMFRVLD 237
G P+YR+KRP+GSP+TRI V SA RNR ++ +T+ S + ++ F+ L+
Sbjct: 220 AGCPMYRFKRPAGSPLTRIVNVFVSAARNRNRFVTDAEVVTQNHNSTDKSIHHNKFKFLN 279
Query: 238 KALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTIN-NFKI 296
KA ++ I+A QVEET+TFL LLPIF STI+M CC+AQ+ TFSVQQG++ NR ++ +F+I
Sbjct: 280 KAKLNNKISATQVEETRTFLALLPIFGSTIIMYCCVAQMGTFSVQQGMVTNRKLSRSFEI 339
Query: 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKI------SAKYNIFRPLKRIGLGLALASGS 350
P SL PL ML+S+ LYE +F ++I S+ +N LKRIG GLAL S S
Sbjct: 340 PVASLNAIPLLCMLSSLALYE----LFGKRILSNSERSSSFN----LKRIGYGLALTSIS 391
Query: 351 MAVAAVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409
MAVAA+VE R+ A N++ +SVFWL Q+++L +SDMLT+GGMLEFF+ E+P SMRS+
Sbjct: 392 MAVAAIVEVKRKHEAVHNNIKISVFWLELQFVMLSLSDMLTVGGMLEFFFRESPASMRSM 451
Query: 410 STALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINF 469
STAL WCST+MG+FLSS LV + N ++G WL +DLN +RL+LFY +LC+LN +N
Sbjct: 452 STALGWCSTAMGFFLSSVLVEVVNGITG-----WL-RDDLNESRLELFYLVLCVLNTLNL 505
Query: 470 LNYIYWAKRY 479
NYI+WAKRY
Sbjct: 506 FNYIFWAKRY 515
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357504943|ref|XP_003622760.1| Peptide transporter-like protein [Medicago truncatula] gi|355497775|gb|AES78978.1| Peptide transporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/518 (53%), Positives = 355/518 (68%), Gaps = 46/518 (8%)
Query: 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIL------ 59
N + V YF KSMHY AES+ MV NF+GT++LL+I GFISDS++TRFTTF++
Sbjct: 49 NGVTLVDYFFKSMHYSVAESSNMVTNFLGTAYLLSIIWGFISDSYITRFTTFLVSGTVQL 108
Query: 60 ----------------------------FCTIELLGLILLTIQAQYSRLQPAMNRRPSHT 91
F +EL GL +LT QA LQP+ N+ PS+
Sbjct: 109 MLQHSYINHNFGKTLVYKFLFYNSSALQFVFLELQGLTMLTYQAYNPNLQPSENKTPSYI 168
Query: 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATV 151
QA L+ GLYA+ATG+GG++A L AHGADQLD N+ LIS++FNW+FFS+C GGL+A V
Sbjct: 169 QALFLFAGLYAIATGLGGMRATLAAHGADQLDQRNKSLISSYFNWYFFSICTGGLLATCV 228
Query: 152 MVWIEENRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVI-----ASA 206
MV IE+ GW+ SF I LALC F GF +Y YKRPSGSP+TRI +VI +
Sbjct: 229 MVPIEQKYGWSTSFLILLFVTSLALCTFASGFALYTYKRPSGSPLTRIIQVIYMFTLVVS 288
Query: 207 IRNRKAS-----RSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQVEETKTFLGLLP 261
+N K S E+TE + + +S F+ L+KAL D I AQV+ETKTF+GLLP
Sbjct: 289 AKNMKVSTGGSVNHEVTEVLLA--REQSQHKFKFLNKALMDQNIGVAQVKETKTFIGLLP 346
Query: 262 IFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVH 321
IF +TIMMNCC++Q+ TFSVQQG +MNRTI+NF IPTQS+ P+ I L I L+E+
Sbjct: 347 IFVTTIMMNCCVSQILTFSVQQGNLMNRTIHNFTIPTQSIAFVPIIISLTFIILFEQFKK 406
Query: 322 IFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYL 381
+ K ++ ++PL R+G+GLAL S SM VA+++ES R A N TLSVFWL++QY+
Sbjct: 407 KNKHKDASNTKFYKPLFRMGIGLALVSTSMFVASIIESKRLEAFNNGKTLSVFWLLFQYI 466
Query: 382 LLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGG 441
LLG+SD LTL GMLEFFYSEAP SMRSI +LSWCS+SMG+F+SS LV+++N VSG+FG
Sbjct: 467 LLGLSDTLTLEGMLEFFYSEAPESMRSICISLSWCSSSMGFFMSSVLVTLSNSVSGRFGK 526
Query: 442 EWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAKRY 479
EW GG DLNH+RLDLFYALLC++N +NFL Y+Y+AKRY
Sbjct: 527 EWFGGKDLNHSRLDLFYALLCVINILNFLLYVYFAKRY 564
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297837471|ref|XP_002886617.1| hypothetical protein ARALYDRAFT_893503 [Arabidopsis lyrata subsp. lyrata] gi|297332458|gb|EFH62876.1| hypothetical protein ARALYDRAFT_893503 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/484 (55%), Positives = 345/484 (71%), Gaps = 17/484 (3%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILF 60
MV ++ N V YF+KSMHY A++A MV NF+GTS+LLT+FGGF++DSF+TR TTFI+F
Sbjct: 41 MVSIAIGNNMVLYFMKSMHYSPAKAANMVTNFIGTSYLLTLFGGFVTDSFVTRSTTFIIF 100
Query: 61 CTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
C+IE+LGL++LT QA Y LQP N PS Q+ +L+TGLY A G GG + +L AHG D
Sbjct: 101 CSIEILGLLVLTFQAHYPNLQPEGNNTPSTLQSTVLFTGLYLFAFGTGGTRPSLLAHGGD 160
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q D ++R IS FFNW++F +C G L+A TVM WI+E F IS V L +ALCIF
Sbjct: 161 QFDSRHQREISKFFNWYYFFVCFGWLMAITVMAWIKE------LFNISIVLLAIALCIFA 214
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRKAS--RSEMTEQIA-SPGATRSNDMFRVLD 237
+G P+YR KRPSGSP+TRI V SA R R S EM + + + ++ + LD
Sbjct: 215 LGLPLYRLKRPSGSPLTRIANVFISAARYRNGSVLDVEMMQSLTFTDNNIHHHNKLKCLD 274
Query: 238 KALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTI-NNFKI 296
KAL + I+A QVEET+TF+GLLPIF STI+MN C+AQL TF+VQQG+ M+R I ++ +I
Sbjct: 275 KALLNKNISATQVEETRTFIGLLPIFFSTIVMNTCVAQLLTFTVQQGMTMSRKISSSMEI 334
Query: 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAV 356
P SL V + +LA I LYE +F + I+ + LKRIGLGL L+S SMAVAA+
Sbjct: 335 PVPSLNVISIIFILAFISLYE----LFGKSINRTSSF--SLKRIGLGLTLSSISMAVAAI 388
Query: 357 VESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSW 415
VE+ R+ A +N V +SVFWL++QYL+L SD+LTLGGM EFFY EAP SM+S+S AL W
Sbjct: 389 VEAKRKHEAVQNDVRISVFWLMFQYLMLSFSDILTLGGMQEFFYREAPASMKSMSIALGW 448
Query: 416 CSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475
CS +MG+FLSS LV+ITN VSG G +WLGG DLN +RLDLFY L+C+LN +N LNYI+
Sbjct: 449 CSIAMGFFLSSLLVAITNAVSGWLGHQWLGGEDLNKSRLDLFYVLVCVLNTLNLLNYIFS 508
Query: 476 AKRY 479
AKRY
Sbjct: 509 AKRY 512
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| TAIR|locus:2090230 | 521 | AT3G25280 [Arabidopsis thalian | 0.989 | 0.909 | 0.554 | 7.4e-137 | |
| TAIR|locus:2090325 | 515 | AT3G25260 [Arabidopsis thalian | 0.977 | 0.908 | 0.523 | 2.6e-127 | |
| TAIR|locus:2170683 | 589 | AT5G62730 [Arabidopsis thalian | 0.488 | 0.397 | 0.415 | 1.5e-87 | |
| TAIR|locus:2006907 | 601 | AT1G33440 [Arabidopsis thalian | 0.488 | 0.389 | 0.45 | 2.2e-80 | |
| TAIR|locus:2025886 | 591 | AT1G59740 [Arabidopsis thalian | 0.876 | 0.710 | 0.352 | 9.3e-59 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.486 | 0.403 | 0.361 | 4.3e-74 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.444 | 0.361 | 0.410 | 1.9e-73 | |
| TAIR|locus:2205769 | 567 | AT1G27040 [Arabidopsis thalian | 0.776 | 0.656 | 0.416 | 3.7e-71 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.434 | 0.364 | 0.362 | 3.1e-69 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.931 | 0.818 | 0.335 | 3.1e-67 |
| TAIR|locus:2090230 AT3G25280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1340 (476.8 bits), Expect = 7.4e-137, P = 7.4e-137
Identities = 270/487 (55%), Positives = 341/487 (70%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXX 60
+VF++N NFV YF+ SMHY A +A MV NFMGTSFLLT+FGGFI+DSF+T FTTFI
Sbjct: 40 IVFIANGFNFVKYFMGSMHYTPATAANMVTNFMGTSFLLTLFGGFIADSFVTHFTTFIVF 99
Query: 61 XXXXXXXXXXXXXQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
QA +L P ++ PS Q+AIL+TGLYAMA G GG+KA+LP+HG D
Sbjct: 100 CCIELMGLILLTFQAHNPKLLPEKDKTPSTLQSAILFTGLYAMAIGTGGLKASLPSHGGD 159
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q+D N RLIS FF+W +FS+C+G L+A TV++WIEE +GW SF IS L ALCIFT
Sbjct: 160 QIDRRNPRLISRFFDWLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGILATALCIFT 219
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRKASR--SEMTEQIASPGATRSNDMFRVLDK 238
+G P YR+KRP+GSP+ +I VI SA RNR S EM + S S++ + +DK
Sbjct: 220 VGLPFYRFKRPNGSPLKKIAIVIISAARNRNKSDLDEEMMRGLISIYKNNSHNKLKWIDK 279
Query: 239 ALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTI-NNFKIP 297
A + I+ +VEET+TFLGLLPIF STI+M+CC+AQL TFS QQG++MN+ + ++F+IP
Sbjct: 280 ATLNKNISETEVEETRTFLGLLPIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIP 339
Query: 298 TQSLTVFPLTIMLASIPLYERSVHIFERKISAKYN----IFRPLKRIGLGLALASGSMAV 353
SLT PL ML SIPLYE F +KIS+ N F LKRIGLGLAL+S SMAV
Sbjct: 340 VPSLTAIPLIFMLLSIPLYE----FFGKKISSGNNNRSSSFN-LKRIGLGLALSSVSMAV 394
Query: 354 AAVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTA 412
+A+VE+ R+ N+ +SV WLV+QYL+L VSDMLTLGGMLEFFY EAP +M+SISTA
Sbjct: 395 SAIVEAKRKHEVVHNNFRISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTA 454
Query: 413 LSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCXXXXXXXXXX 472
L WCST++G+FLS+ LV +TN V+G+ G +WLGG DLN RL+LFY LLC
Sbjct: 455 LGWCSTALGFFLSTTLVEVTNAVTGRLGHQWLGGEDLNKTRLELFYVLLCVLNTLNLLNY 514
Query: 473 XXWAKRY 479
WAKRY
Sbjct: 515 IFWAKRY 521
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| TAIR|locus:2090325 AT3G25260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
Identities = 255/487 (52%), Positives = 338/487 (69%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXX 60
MVFL+ + NF+ YF KSM+Y ++A MV NF+GTSFLLTIFGGF++DSFLTRF F+
Sbjct: 40 MVFLACSTNFMMYFTKSMNYSTPKAATMVTNFVGTSFLLTIFGGFVADSFLTRFAAFVLF 99
Query: 61 XXXXXXXXXXXXXQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGAD 120
QA ++LQP ++PS Q+ +L+TGLYA+A GVGGVK +LPAHG D
Sbjct: 100 GSIELLGLIMLTLQAHITKLQPQGGKKPSTPQSTVLFTGLYAIAIGVGGVKGSLPAHGGD 159
Query: 121 QLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180
Q+ N+RLIS FFNW+FFS+C GG +A T+MVWIEEN GW+ SF IS L A+ +F
Sbjct: 160 QIGTRNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASAIFVFV 219
Query: 181 IGFPIYRYKRPSGSPITRIFKVIASAIRNRK--ASRSEM-TEQIASPGATRSNDMFRVLD 237
G P+YR+KRP+GSP+TRI V SA RNR + +E+ T+ S + ++ F+ L+
Sbjct: 220 AGCPMYRFKRPAGSPLTRIVNVFVSAARNRNRFVTDAEVVTQNHNSTDKSIHHNKFKFLN 279
Query: 238 KALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTIN-NFKI 296
KA ++ I+A QVEET+TFL LLPIF STI+MNCC+AQ+ TFSVQQG++ NR ++ +F+I
Sbjct: 280 KAKLNNKISATQVEETRTFLALLPIFGSTIIMNCCVAQMGTFSVQQGMVTNRKLSRSFEI 339
Query: 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKI---SAKYNIFRPLKRIGLGLALASGSMAV 353
P SL PL ML+S+ LYE +F ++I S + + F LKRIG GLAL S SMAV
Sbjct: 340 PVASLNAIPLLCMLSSLALYE----LFGKRILSNSERSSSFN-LKRIGYGLALTSISMAV 394
Query: 354 AAVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTA 412
AA+VE R+ A N++ +SVFWL Q+++L +SDMLT+GGMLEFF+ E+P SMRS+STA
Sbjct: 395 AAIVEVKRKHEAVHNNIKISVFWLELQFVMLSLSDMLTVGGMLEFFFRESPASMRSMSTA 454
Query: 413 LSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCXXXXXXXXXX 472
L WCST+MG+FLSS LV + N ++G WL +DLN +RL+LFY +LC
Sbjct: 455 LGWCSTAMGFFLSSVLVEVVNGITG-----WLR-DDLNESRLELFYLVLCVLNTLNLFNY 508
Query: 473 XXWAKRY 479
WAKRY
Sbjct: 509 IFWAKRY 515
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| TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
Identities = 103/248 (41%), Positives = 144/248 (58%)
Query: 246 TAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFP 305
T QV++ K + +LPIF STIM+NCCLAQL TFSVQQ MN + +F +P +L VFP
Sbjct: 335 TEEQVKDVKIVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVFP 394
Query: 306 LTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRR--- 362
+ M+ P Y + RK + L+RIG GL L+ +MAVAA+VE+ R+
Sbjct: 395 VVFMMILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHVV 454
Query: 363 --AAAENH--------VTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTA 412
+ N+ + ++ W+ QY+ LG +D+ TL GM+EFF++EAP +MRS++T+
Sbjct: 455 VSCCSNNNSSSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSLATS 514
Query: 413 LSWCSTSMGYFLSSALVSITNLVSG-KFGGEWLGGNDLNHARLDLFYALLCXXXXXXXXX 471
LSW S +MGY+ SS LVS N V+G WL G +LN L+ FY L+C
Sbjct: 515 LSWASLAMGYYFSSVLVSAVNFVTGLNHHNPWLLGENLNQYHLERFYWLMCVLSGINFLH 574
Query: 472 XXXWAKRY 479
WA RY
Sbjct: 575 YLFWASRY 582
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| TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 108/240 (45%), Positives = 143/240 (59%)
Query: 246 TAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINN-FKIPTQSLTVF 304
T QV + K L ++PIFA TI+ N LAQLQTFSVQQG MN I F+IP SL
Sbjct: 328 TIEQVHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAI 387
Query: 305 PLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAA 364
P I++ +PLYE RK++ + PL+RIG GL LA+ SM AA+VE RR +
Sbjct: 388 PYIILIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRES 447
Query: 365 -AENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYF 423
E +V LS+FW+ Q+L+ G+S+M T G++EFFY ++ SM+S TA+++CS S G++
Sbjct: 448 FLEQNVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFY 507
Query: 424 LSSALVSITNLVSGKFGGE----WLGGNDLNHARLDLFYALLCXXXXXXXXXXXXWAKRY 479
LSS LVS N V+ G WLG NDLN RLD FY LL W++ Y
Sbjct: 508 LSSVLVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWY 567
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| TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 163/462 (35%), Positives = 247/462 (53%)
Query: 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXXXXX 63
LS A N V F+ ++ A + + F+G+ + + IFG F+ + FI
Sbjct: 81 LSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFG-FVE------LSGFILLSVQ 133
Query: 64 XXXXXXXXXXQAQYSRLQPAMNRRPSHTQ---AAILYTGLYAMATGVGGVKAALPAHGAD 120
Q + + P +++ + A I + LY +A G G VK + AHGAD
Sbjct: 134 AHLP------QLKPPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGAD 187
Query: 121 QLDHSN---RRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALC 177
Q S+ + +S++FN +F+ G L+A T++VW++ + G + F +SA A+ + +
Sbjct: 188 QFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGII 247
Query: 178 IFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRK-ASRSEMT-----EQIAS---PGATR 228
G +R KRP S T I VI +AI RK AS S+ +A+ P +T
Sbjct: 248 SLVSGTMYFRNKRPRRSIFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTL 307
Query: 229 SND-MFRVLDKALF--DDT---------ITAAQVEETKTFLGLLPIFASTIMMNCCLAQL 276
+ FR LDKA DT T QVE+ KT + L+PIFASTI+ N LAQL
Sbjct: 308 PHTPRFRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQL 367
Query: 277 QTFSVQQGIIMN-RTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFR 335
QTFSVQQG MN R N+F IP SL P +++ +PLY+ + F RK++ +
Sbjct: 368 QTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIP 427
Query: 336 PLKRIGLGLALASGSMAVAAVVESTRR-AAAENHVTLSVFWLVWQYLLLGVSDMLTLGGM 394
PL RIG+GL L++ SM AA++E RR ++ + LS+FW+ Q+L+ G+S+M T G+
Sbjct: 428 PLTRIGIGLFLSTFSMVSAAMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGL 487
Query: 395 LEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVS 436
+EFFY ++ M S AL++CS S G++ SS LVS+ N ++
Sbjct: 488 IEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKIT 529
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| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 4.3e-74, Sum P(2) = 4.3e-74
Identities = 89/246 (36%), Positives = 136/246 (55%)
Query: 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXXXXXXXX 66
A+N V Y +++MH P++ SA +V +FMGTSFLL + GGF++DSFL RF T
Sbjct: 49 AVNLVTYLMETMHLPSSTSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQAL 108
Query: 67 XXXXXXXQAQYSRLQPAMNRR-----PSHT-QAAILYTGLYAMATGVGGVKAALPAHGAD 120
+ L+P P+ Q ILY LY +A G GG+K+++ G+D
Sbjct: 109 GTGALAVATKLPELRPPTCHHGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSD 168
Query: 121 QLDHSN---RRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALC 177
Q D + + ++ FFN FFF + G L+A TV+V++++ G + ++ I V++ +A+
Sbjct: 169 QFDDKDPKEKAHMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIV 228
Query: 178 IFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIA--SPGATR--SNDMF 233
IF G YRYK+ GSP+ +IF+VIA+A R RK + + +P R D F
Sbjct: 229 IFLCGTKRYRYKKSQGSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEHTDQF 288
Query: 234 RVLDKA 239
+LDKA
Sbjct: 289 HLLDKA 294
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| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 1.9e-73, Sum P(2) = 1.9e-73
Identities = 90/219 (41%), Positives = 138/219 (63%)
Query: 246 TAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFP 305
T QVEE KT + + PI+AS I+ + +Q+ T VQQG MNR I +F+IP S VF
Sbjct: 351 TVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFD 410
Query: 306 LTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAA 365
I+L SIP+Y+R + F R+ + L+R+G+GL L+ S+A AA+VE+ R A
Sbjct: 411 TLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA 470
Query: 366 ENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLS 425
++ V +S+FW + QY+L+G++++ G +EFFY E+P +MRS+ +AL+ +T++G +LS
Sbjct: 471 QDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLS 530
Query: 426 S---ALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALL 461
S LV+ + GK G W+ +DLN LD F+ LL
Sbjct: 531 SLILTLVAYFTALGGKDG--WVP-DDLNKGHLDYFFWLL 566
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| TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 166/399 (41%), Positives = 231/399 (57%)
Query: 106 GVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165
G+ G + A D+ R+ S FFN++ F L G LVA T +VWIE+N+GW F
Sbjct: 162 GIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGF 221
Query: 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVI-ASAI--------RNRKASRSE 216
+S +++ L++ +F +G Y+ K P GSP+T IFKV+ A++I N SR
Sbjct: 222 GVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAASIVSCSSKTSSNHFTSREV 281
Query: 217 MTE-QIASPGATRSNDMFRVLDKALFDDT------ITAAQVEETKTFLGLLPIFASTIMM 269
+E + +P + +N + L+KA+ T T QVE+ K L +LPIF TIM+
Sbjct: 282 QSEHEEKTPSQSLTNSL-TCLNKAIEGKTHHIWLECTVQQVEDVKIVLKMLPIFGCTIML 340
Query: 270 NCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISA 329
NCCLAQL T+SV Q MNR I NF +P+ SL VFP+ ML P Y+ + F RK++
Sbjct: 341 NCCLAQLSTYSVHQAATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTK 400
Query: 330 KYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAA------ENHVTLSV--FWLVWQYL 381
L+RIG+GL L+ +MAVAA+VE R+ A ++ TL + W+ QYL
Sbjct: 401 SEIGITHLQRIGVGLVLSIVAMAVAALVELKRKQVAREAGLLDSEETLPITFLWIALQYL 460
Query: 382 LLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFG- 440
LG +D+ TL G+LEFF++EAP SMRS++T+LSW S ++GY+LSS +V I N V+ G
Sbjct: 461 FLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQ 520
Query: 441 GEWLGGNDLNHARLDLFYALLCXXXXXXXXXXXXWAKRY 479
WLG LN RLDLFY L+C WAKRY
Sbjct: 521 SPWLG-EKLNRNRLDLFYWLMCVLSVVNFLHYLFWAKRY 558
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| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 78/215 (36%), Positives = 117/215 (54%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXX 60
+ + N V Y ++ A +A V N+ GT ++ + G FI+D++L R+ T
Sbjct: 43 LAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATF 102
Query: 61 XXXXXXXXXXXXXQAQYSRLQP----AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPA 116
A L+P A P+ +Q A+ + LY +A G GG+K + +
Sbjct: 103 VFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSS 162
Query: 117 HGADQLDHS--NRRLI-SAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALG 173
GADQ D + N ++ S+FFNWF+FS+ G L+AATV+VWI+ N GW F + VA+
Sbjct: 163 FGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMV 222
Query: 174 LALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIR 208
+A+C F G YR +RP GSP+TRIF+VI +A R
Sbjct: 223 IAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFR 257
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| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 160/477 (33%), Positives = 260/477 (54%)
Query: 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIXX 60
+ + A N + YF +H +A V + GT ++ + G I+D++ R+ T
Sbjct: 61 LAYYGIAKNLITYFTNELHETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACF 120
Query: 61 XXXXXXXXXXXXXQAQYSRLQPAM---NRRPSHT--QAAILYTGLYAMATGVGGVKAALP 115
A L+PA + P T Q+ +L++GLY +A G GG+K +
Sbjct: 121 SAIYFTGMVALTLSASVPGLKPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVS 180
Query: 116 AHGADQLDH---SNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVAL 172
+ GADQ D S R ++FFNWF+F++ G V++TV+VWI+EN GW F I V +
Sbjct: 181 SFGADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFM 240
Query: 173 GLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDM 232
GLA F G P+YR+++P GSPIT + +V+ +A R S ++ E G +N
Sbjct: 241 GLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRK---SNLKVPEDSTDEGDANTNP- 296
Query: 233 FRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTIN 292
+++ T+T QVEE K L L+PI+AS I+ + +Q+ T VQQG M RTI
Sbjct: 297 WKLC-------TVT--QVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIG 347
Query: 293 NFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMA 352
F+IP +L +F +L S+P+Y+R + R+ + F L+R+G+GL ++ S+
Sbjct: 348 LFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLT 407
Query: 353 VAAVVESTRRAAAENH--------VTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPH 404
AA+VE+ R A + V L++FW + QY L+G + + G +EFFY ++P
Sbjct: 408 FAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPD 467
Query: 405 SMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALL 461
SMRS+ +A + +T++G +LSS ++++ +SGK W+ +++N+ LD F+ LL
Sbjct: 468 SMRSLCSAWALLTTTLGNYLSSLIITLVAYLSGK--DCWIPSDNINNGHLDYFFWLL 522
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LSE8 | PTR35_ARATH | No assigned EC number | 0.5864 | 0.9916 | 0.9117 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.II.236.1 | hypothetical protein (510 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 479 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 4e-51 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-18 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-17 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 9e-06 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 4e-51
Identities = 117/388 (30%), Positives = 176/388 (45%), Gaps = 45/388 (11%)
Query: 54 FTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAA 113
F T +L I +G +LLT+ A + S Q A+ Y GLY +A G GG+K
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGA--------IPPSLSPVQVALFYIGLYLIALGTGGIKPN 52
Query: 114 LPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALG 173
+ A GADQ D + FF+WF+FS+ AG L+A + ++++N G+ F + AV +
Sbjct: 53 VSAFGADQFDETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGML 112
Query: 174 LALCIFTIGFPIYR-YKRPSGSPITRIFK-VIASAIRNRKASRSEMTEQIA--------- 222
LAL +F +G Y+ P GSP T +I +A +NRK + + +
Sbjct: 113 LALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWALEKYNKR 172
Query: 223 ----SPGATRSNDMFRVLDK--ALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQL 276
+ TR +F L K ALFD V + L +LPI+A I+ + QL
Sbjct: 173 SISQTKVHTRVAVIFIPLPKFWALFD---QQGSVWLLQAILLMLPIWAFWILPDQMWTQL 229
Query: 277 QTFSVQQGIIMNRTI-NNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFR 335
T V+Q M+R I F+IP S F +L +P+ + V+ R
Sbjct: 230 ATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLRLKR----GLT 285
Query: 336 PLKRIGLGLALASGSMAVAAVVESTR--------RAAAENHVTLSVFWLVWQYLLLGVSD 387
+R GLG+ + + +AA+VE+ R + V L + W + + + GV
Sbjct: 286 LPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSLPELFISGVG- 344
Query: 388 MLTLGGMLEFFYSEAPHSMRSISTALSW 415
L G LEF P SM S+ T LS
Sbjct: 345 ---LAGALEFAPDALPSSMMSLWTLLSA 369
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 4e-18
Identities = 81/441 (18%), Positives = 152/441 (34%), Gaps = 61/441 (13%)
Query: 14 FLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTI 73
+ + + + + + +L I GG+++D L T +L + +G ++L I
Sbjct: 52 LGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI 111
Query: 74 QAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAF 133
S + LY GL + G G K + + + + R
Sbjct: 112 --------------SSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR-DGG 156
Query: 134 FNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFTIG----------- 182
F F+ + G L+A + + N GW+ F ++AV + + L IF +G
Sbjct: 157 FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVP 216
Query: 183 --FPI--YRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDK 238
P+ G + I + + + N+ + + FR
Sbjct: 217 DPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKV 276
Query: 239 ALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQT-FSVQQGIIMNRTINNFKIP 297
+E + L +P+F ++ Q+ + ++ +NR I F++P
Sbjct: 277 F-----------DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVP 325
Query: 298 T---QSLTVFPLTIMLASIPLYERSVHIFER---KISAKYNIFRPLKRIGLGLALASGSM 351
QSL P I+L S I K+ + LGL LA
Sbjct: 326 PAWFQSLN--PFFIILFSP--------ILAALWTKLGRGNKQPSTPIKFALGLILAGLGF 375
Query: 352 AVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSIST 411
+ + V SV+WLV Y+L ++ L AP +++S
Sbjct: 376 LILLLAG-IWFGGPSGLV--SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIM 432
Query: 412 ALSWCSTSMGYFLSSALVSIT 432
A+ + + + G L + +T
Sbjct: 433 AMWFLTVAAGQTLGGQVAGLT 453
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 89/365 (24%), Positives = 162/365 (44%), Gaps = 46/365 (12%)
Query: 10 FVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLI 69
V Y L + + + + + F +L + G I+DS+L +F T + + ++G
Sbjct: 10 LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69
Query: 70 LLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRL 129
L ++ A S P + A+ GL +A G GG+K + A G DQ + L
Sbjct: 70 LASLGAVPSLGHPLHD--------ALSLVGLALIALGTGGIKPCVSAFGGDQFEERQLSL 121
Query: 130 ISAFFNWFFFSLCAGGLVAATVMVWIEENRG----WNC---SFKISAVALGLALCIFTIG 182
FF++F+F++ AG L + + + + G +C +F + + + LAL +F++G
Sbjct: 122 RFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMG 181
Query: 183 FPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVL------ 236
+Y+ K P G+ ++++ K I A++ R TRS D R+
Sbjct: 182 SKMYKKKPPVGNIVSKVMKCIVFALKKR--------------FRTRSEDWPRLHWLDWAA 227
Query: 237 DKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKI 296
K L + TK L +L +F M Q + Q M+ + F I
Sbjct: 228 PKYLIRM------IRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVGLFPI 281
Query: 297 -PTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAA 355
P Q V PL + L +P+++ V+ K + F L+++ +G+ LA+ + AVAA
Sbjct: 282 QPDQMQAVNPLLV-LILVPIFDYVVYPALAKCGTR---FTSLRKMAVGMLLAALAFAVAA 337
Query: 356 VVEST 360
++++
Sbjct: 338 LLQNK 342
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 16/161 (9%)
Query: 22 AAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ 81
++ I+ + +LLT G + D T +L + +LG +L
Sbjct: 47 QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML---------- 96
Query: 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSL 141
AM+ P +++ GL +A G G KA + + + F F+ S+
Sbjct: 97 -AMSIYPD-----LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSI 150
Query: 142 CAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFTIG 182
G ++ + I EN G++ F ++AV + + L F G
Sbjct: 151 NIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAG 191
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.98 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.95 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.95 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.95 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.94 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.94 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.93 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.93 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.93 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.93 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.93 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.93 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.92 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.92 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.92 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.92 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.92 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.92 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.92 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.92 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.92 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.92 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.92 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.92 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.92 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.92 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.92 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.92 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.92 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.91 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.91 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.9 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.9 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.9 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.9 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.9 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.9 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.89 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.89 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.89 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.89 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.89 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.89 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.88 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.88 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.88 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.88 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.88 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.88 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.88 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.87 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.87 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.86 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.84 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.82 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.81 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.81 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.8 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.79 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.79 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.77 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.77 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.77 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.76 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.76 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.75 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.74 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.74 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.73 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.73 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.72 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.71 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.7 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.69 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.67 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.67 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.66 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.65 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.61 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.58 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.55 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.54 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.52 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.43 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.43 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.39 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.38 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.36 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.36 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.35 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.35 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.34 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.33 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.32 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.32 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.31 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.3 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.29 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.29 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.29 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.28 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.28 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.27 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.27 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.26 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.26 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.23 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.23 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.22 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.21 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.2 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.19 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.18 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.18 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.17 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.17 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.17 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.16 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.16 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.14 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.13 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.12 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.09 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.09 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.06 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.06 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.05 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.05 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.04 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.04 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.04 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.04 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.04 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.03 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.03 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.03 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.03 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.01 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.01 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.01 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.98 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.95 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.92 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.91 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.91 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.9 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.89 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.89 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.87 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.86 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.84 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.83 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.8 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.78 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.77 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.76 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.76 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.73 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.71 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.68 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.67 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.66 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.66 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.64 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.64 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.61 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.6 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.57 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.56 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.56 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.54 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.5 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.5 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.49 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.48 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.47 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.43 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.42 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.41 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.37 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.33 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.31 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.29 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.27 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.26 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.25 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.23 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.2 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.18 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.14 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.14 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.11 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.07 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.0 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.99 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.98 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.98 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.98 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.93 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.87 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.86 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.84 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.71 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.66 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.59 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.54 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.44 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.41 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.4 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.28 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.26 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.07 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.03 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.79 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.55 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.44 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.31 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.98 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.91 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.77 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 95.67 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 95.54 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.22 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 94.99 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.73 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.45 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.9 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.89 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.14 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 91.77 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 91.69 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 91.33 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 90.69 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 90.0 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 89.21 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 88.55 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 88.27 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 86.14 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 85.61 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 84.18 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 81.42 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 80.9 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=343.53 Aligned_cols=477 Identities=44% Similarity=0.707 Sum_probs=419.6
Q ss_pred CceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 1 ~~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
+++|++..++..|+++++|.+..++.-.++.+.......++.++.++|.|+||.+++.++.++..+|..++.+....+.+
T Consensus 51 ~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l 130 (571)
T KOG1237|consen 51 LAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPAL 130 (571)
T ss_pred HhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999888888877877
Q ss_pred ccc-c--------CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCC---cchhhhhhhhhHHHHHHhhhHHHH
Q 011716 81 QPA-M--------NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDH---SNRRLISAFFNWFFFSLCAGGLVA 148 (479)
Q Consensus 81 ~~~-~--------~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~ig~~ig 148 (479)
+++ | -..++......++.++-+..+|.|+..|+..++-+||+++ +++..+.+.++|+++..++|..++
T Consensus 131 ~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a 210 (571)
T KOG1237|consen 131 LPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLA 210 (571)
T ss_pred CCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHH
Confidence 753 2 1333445667888899999999999999999999999993 334556799999999999999999
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhcc---C--
Q 011716 149 ATVMVWIEENRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIA---S-- 223 (479)
Q Consensus 149 ~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 223 (479)
-.+..++.++.||.+.|.++.++..++++++....+.++.++|.+.|+..+.+++..+.++++...+.+++... .
T Consensus 211 ~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~ 290 (571)
T KOG1237|consen 211 QTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEELYYDCTDS 290 (571)
T ss_pred HHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhcccccccc
Confidence 99999999999999999999999999999999999999888899999999999999999888765554432221 1
Q ss_pred CCCCCCCCcchhhhhhcccC--------------CCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhccc
Q 011716 224 PGATRSNDMFRVLDKALFDD--------------TITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNR 289 (479)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (479)
...++.++ ..++|++..+. .++..++||.|..++.++++.+...++..+.|+.+++.+|...|++
T Consensus 291 ~~~~~t~~-f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr 369 (571)
T KOG1237|consen 291 VAIEGTKP-FRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDR 369 (571)
T ss_pred ccccCCcc-cchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCC
Confidence 11233334 67788876551 2678889999999999999999999999999999999999999999
Q ss_pred CCCC-cccCcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-
Q 011716 290 TINN-FKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAA-E- 366 (479)
Q Consensus 290 ~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~-~- 366 (479)
++++ +.++++.++.+..+...+..|+.++...|+.||..+++.+++.+.++.+|+++..+++...+..+..|.+.. +
T Consensus 370 ~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~ 449 (571)
T KOG1237|consen 370 HLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSL 449 (571)
T ss_pred CCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhc
Confidence 9987 899999999999999999999999999999999987777889999999999999999999999998777662 2
Q ss_pred --CCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCccc
Q 011716 367 --NHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWL 444 (479)
Q Consensus 367 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~ 444 (479)
+.++++.+|++++++++|++|.+...+..|+.++++|++||+.+++++.+...+|+.++..++.++...+.+ ..+|+
T Consensus 450 ~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~-~~~w~ 528 (571)
T KOG1237|consen 450 LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK-AAEWL 528 (571)
T ss_pred cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcccC
Confidence 346899999999999999999999999999999999999999999999999999999999999998876654 22899
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccC
Q 011716 445 GGNDLNHARLDLFYALLCILNFINFLNYIYWAKRY 479 (479)
Q Consensus 445 ~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~ 479 (479)
+..+++.++.+++||+.++...+....|..+.++|
T Consensus 529 ~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y 563 (571)
T KOG1237|consen 529 GFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRY 563 (571)
T ss_pred ChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEee
Confidence 93399999999999999999999999888887765
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=305.96 Aligned_cols=428 Identities=17% Similarity=0.274 Sum_probs=330.6
Q ss_pred CceeehhHHHHHHhhhhcC----CChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 011716 1 MVFLSNAINFVAYFLKSMH----YPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQ 76 (479)
Q Consensus 1 ~~~y~~~~~~~~yl~~~l~----~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~ 76 (479)
++|||+...+..|+..+++ +|++++.-+.++|..-....++++||++||++|+|+++..+.++.++|.+.++..+
T Consensus 35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~- 113 (498)
T COG3104 35 FSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS- 113 (498)
T ss_pred HhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-
Confidence 5899999999999999888 99999999999999999999999999999999999999999999999999998772
Q ss_pred hcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh
Q 011716 77 YSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE 156 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~ 156 (479)
..+...++++..++++|.|..+|+..++++|++|+++++ |-..++.+|++.|+|+.++|.+.+++.
T Consensus 114 -------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 114 -------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred -------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 014568899999999999999999999999999999855 888999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHhhcccceecC--CCCCchhh----------HHHHHHHH---Hhhccccccch--hh
Q 011716 157 ENRGWNCSFKISAVALGLALCIFTIGFPIYRYKR--PSGSPITR----------IFKVIASA---IRNRKASRSEM--TE 219 (479)
Q Consensus 157 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~---~~~~~~~~~~~--~~ 219 (479)
+++||+..|..+++.+.++++.+++.+++...+. ++.++.+. +....... ..+.+.-.... ..
T Consensus 180 ~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (498)
T COG3104 180 INYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVIS 259 (498)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887654332 22222110 00011110 00000000000 00
Q ss_pred hccCCCCCCCCCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhh-hcccCCCCcccCc
Q 011716 220 QIASPGATRSNDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGI-IMNRTINNFKIPT 298 (479)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 298 (479)
...+ ..++- ...+.+..+ +|+++.+..+++++...++|..+.|+++.+..+.. ..+++..|+++++
T Consensus 260 i~~~---------~~~~~---~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~ 326 (498)
T COG3104 260 ILIA---------IIYFA---EAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPP 326 (498)
T ss_pred HHHH---------HHHHH---HHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCH
Confidence 0000 00000 001122233 77889999999999999999999999998877764 4455545688999
Q ss_pred ccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHH
Q 011716 299 QSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVW 378 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (479)
++.|+.|++..++++|+.++++.|+.++. +.+++..|+.+|+.+++.+++.+...... ..++++..+.+|+++
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~ps~~~KFalGl~l~g~~fl~l~~~~~~---~~~~~~~~s~~~lil 399 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKLGRGN----KQPSTPIKFALGLILAGLGFLILLLAGIW---FGGPSGLVSVWWLVL 399 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCcCHHHHHH
Confidence 99999999999999999999999987774 34578888999999999999988876422 111145688999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHH
Q 011716 379 QYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFY 458 (479)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f 458 (479)
.++++++||.+.+|+..+++++.+|+++++.+++++.+....|+.++..+.+.... ++. ..+......+|
T Consensus 400 ~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~~---------~~~~~~~~~~F 469 (498)
T COG3104 400 SYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TDP---------AYTAFIEGRVF 469 (498)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cch---------hhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999998777764221 100 11123334567
Q ss_pred HHHHHHHHHHHHHHh
Q 011716 459 ALLCILNFINFLNYI 473 (479)
Q Consensus 459 ~~~~~~~l~~~~~~~ 473 (479)
+.++.+.++.....+
T Consensus 470 ~~~g~v~i~~~~~~~ 484 (498)
T COG3104 470 GTIGVVAIVIGILLL 484 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777665544433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=308.12 Aligned_cols=401 Identities=16% Similarity=0.213 Sum_probs=296.4
Q ss_pred CceeehhHHHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011716 1 MVFLSNAINFVAYFLKS--MHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYS 78 (479)
Q Consensus 1 ~~~y~~~~~~~~yl~~~--l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~ 78 (479)
++||++.++++.|++++ +|++..+++++.+.+.++..++++++|+++||++|||+++..+..+.+++.+++++++
T Consensus 24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~--- 100 (475)
T TIGR00924 24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI--- 100 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc---
Confidence 46899999999999987 9999999999999999999999999999999955999999999999999999888774
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc
Q 011716 79 RLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN 158 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~ 158 (479)
+...+.++|.+.|+|.|...|+..++++|++|++++++|+++++++++..|+|.++||.+++++.++
T Consensus 101 -------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~ 167 (475)
T TIGR00924 101 -------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN 167 (475)
T ss_pred -------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557778999999999999999999999999987645588899999999999999999999999998
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhh----HHH---H----HHHHHhhc-cccccchhhh-ccCCC
Q 011716 159 RGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITR----IFK---V----IASAIRNR-KASRSEMTEQ-IASPG 225 (479)
Q Consensus 159 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~----~~~~~~~~-~~~~~~~~~~-~~~~~ 225 (479)
+||++.|.+.++..+++++.+...++.+++.++++++.++ ... . .....+.. ........+. ...
T Consensus 168 ~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 245 (475)
T TIGR00924 168 YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMT-- 245 (475)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH--
Confidence 9999999998877666666555555444332222211110 000 0 00000000 0000000000 000
Q ss_pred CCCCCCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhh-hhhhcccCCCCcccCccccccc
Q 011716 226 ATRSNDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQ-QGIIMNRTINNFKIPTQSLTVF 304 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 304 (479)
...... ..+.+.. ..+..+.+++++....+.+++...++++.+.|..+.+.. +..+++.+..++.+++++++++
T Consensus 246 ~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~ 320 (475)
T TIGR00924 246 VTLAVI-IFFFRLA----FKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSL 320 (475)
T ss_pred HHHHHH-HHHHHHH----HhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhh
Confidence 000000 0000000 000011123334445677888889999999999886543 3455777777788899999999
Q ss_pred ccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 011716 305 PLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLG 384 (479)
Q Consensus 305 ~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (479)
|++.+++..|+.+++..++.||. .+++...|+..|+++.++++..++..... .+++.+.+.+|+++.+++.+
T Consensus 321 n~~~iil~~p~~~~~~~~l~~~~----~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~~~~~s~~~~i~~~~~~~ 392 (475)
T TIGR00924 321 NPFWVVVGSPVLAMIWTRLGRKG----KDPTTPLKFTLGMLFCGASFLTFAASIWF----ADAGGLTSPWFMVLIYLFQT 392 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccCHHHHHHHHHHHH
Confidence 99999999999887766666652 23467778899999999999888765211 11123468899999999999
Q ss_pred HHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011716 385 VSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSIT 432 (479)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i 432 (479)
+||.+..|..++++.+.+|+++||+++|++.+...+|+.+++.+....
T Consensus 393 ~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 393 LGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred HHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888764
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=307.36 Aligned_cols=436 Identities=13% Similarity=0.189 Sum_probs=306.2
Q ss_pred CceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 1 ~~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
++||++.++++.|+++++|++.++++++.+.|.....+..+++|+++||++||||+++.+..++.+++++++++.+
T Consensus 28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~---- 103 (489)
T PRK10207 28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL---- 103 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 3789999999999999999999999999999999999999999999999679999999999999999999988741
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
....++++|.++++|.|...|+..++++|++|++++ +|.+.+++++++.|+|.++||.+++++.+++|
T Consensus 104 -----------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~-~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g 171 (489)
T PRK10207 104 -----------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP-RLDGAFTLFYMSINIGSLISLSLAPVIADKFG 171 (489)
T ss_pred -----------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch-hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 122355789999999999999999999999998763 36778999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccceec--CCCCCchhhHHHHHH-------HH-Hhhccccccchhhhc-cCCCCCCC
Q 011716 161 WNCSFKISAVALGLALCIFTIGFPIYRYK--RPSGSPITRIFKVIA-------SA-IRNRKASRSEMTEQI-ASPGATRS 229 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~-~~~~~~~~ 229 (479)
||+.|++..+..+++++.+...++..++. +|++++. +..+... .. ............... .. ....
T Consensus 172 w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i 248 (489)
T PRK10207 172 YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIV--LSIV 248 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHH
Confidence 99999997766665555555544333332 2222221 1111000 00 000000000000000 00 0000
Q ss_pred CCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhh-hcccCCCCcccCcccccccccce
Q 011716 230 NDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGI-IMNRTINNFKIPTQSLTVFPLTI 308 (479)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~ 308 (479)
.. .-++... ...++ .++++.+....+++....++..+.|..+.+..+.. ..+++..|..+++++++++|++.
T Consensus 249 ~~-~~f~~~~-----~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~ 321 (489)
T PRK10207 249 VT-IIFFREA-----FKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFW 321 (489)
T ss_pred HH-HHHHHHH-----hcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHH
Confidence 00 0000000 01111 22344444555666678888999888766655443 45666667888889999999999
Q ss_pred eehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHH
Q 011716 309 MLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDM 388 (479)
Q Consensus 309 ~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (479)
.++..|+.+++.+|+.+|. .++++..++..|+++.+++++.+....... .+.+...+.+++++.+++.++||.
T Consensus 322 iii~~pl~~~l~~rl~~r~----~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~~~~s~~~~i~~~~l~g~Ge~ 394 (489)
T PRK10207 322 VVVASPILAGIYTHLGSKG----KDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQGLTSPWFIVLVYLFQSLGEL 394 (489)
T ss_pred HHHHHHHHHHHHHHHhhCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCccCHHHHHHHHHHHHHHHH
Confidence 9899999999988887763 346788899999999998887654332110 111123567889999999999999
Q ss_pred HhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHH
Q 011716 389 LTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFIN 468 (479)
Q Consensus 389 ~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~ 468 (479)
+.+|+.++++.+.+|++++|.++|++++.+.+|+.++..+...+..... ...+. .....+..+|...++.++++
T Consensus 395 ~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~----~~~~~--~~~~~~~~~f~~~~~~~~~~ 468 (489)
T PRK10207 395 FISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN----ITDPL--ETLPVYTNVFGKIGLVTLGV 468 (489)
T ss_pred HHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccch--hhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888866531000 00010 01223456677777777666
Q ss_pred HHHHhhh
Q 011716 469 FLNYIYW 475 (479)
Q Consensus 469 ~~~~~~~ 475 (479)
.++++.+
T Consensus 469 ~v~~~~~ 475 (489)
T PRK10207 469 AVVMALM 475 (489)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=291.17 Aligned_cols=400 Identities=14% Similarity=0.201 Sum_probs=292.5
Q ss_pred CceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 1 ~~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
++||++...++.|+++++|+++.+++.+.+.+.....++++++|+++||+.||||+++.+..+..++.++++....
T Consensus 23 fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~---- 98 (493)
T PRK15462 23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI---- 98 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 3689999999999999999999999999999999999999999999999339999999999999999877664320
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
+...+.++..+..+|.|...|+.+++++|++|++++ +|.+++++.|...|+|+.++|.+++++.+++|
T Consensus 99 -----------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~-~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G 166 (493)
T PRK15462 99 -----------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP-RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS 166 (493)
T ss_pred -----------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc-cccceehHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 112344555666788888899999999999997642 27889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccceecCC-CCCch--hhHHH---------HHHH-HHhhccccccchhhhccCCCCC
Q 011716 161 WNCSFKISAVALGLALCIFTIGFPIYRYKRP-SGSPI--TRIFK---------VIAS-AIRNRKASRSEMTEQIASPGAT 227 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 227 (479)
|+..|.+.++.++++++.++..++..++... ++++. ++... .... .................. .
T Consensus 167 w~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 243 (493)
T PRK15462 167 WAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIV---A 243 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 9999999887777777666655544333210 11111 11000 0000 000000000000000000 0
Q ss_pred CCCCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhh-hhhcccCCCCcccCccccccccc
Q 011716 228 RSNDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQ-GIIMNRTINNFKIPTQSLTVFPL 306 (479)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 306 (479)
..-. ..++-.. . . ...+.+|++++.....+++...++|..++|.++.+... .++.|+++.|+.+++++++++|+
T Consensus 244 ~~~~-~~~~~~~-~--~-~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp 318 (493)
T PRK15462 244 TIIG-LGVLAKI-Y--R-KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINA 318 (493)
T ss_pred HHHH-HHHHHHH-H--H-hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhH
Confidence 0000 0000000 0 0 01123667788888889999999999999999766543 35788888899999999999999
Q ss_pred ceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHH
Q 011716 307 TIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVS 386 (479)
Q Consensus 307 ~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (479)
+.+++.+|+.+++..|+.+|. +.++...|..+|+++.+++++.+...... .+++...+.+|++..++++++|
T Consensus 319 ~~ii~l~P~~a~lw~~l~~~~----~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 319 FAVMLCGVFLAWVVKESVAGN----RTVRIWGKFALGLGLMSAGFCILTLSARW----SAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999887775542 24578889999999999999888765422 1112247888999999999999
Q ss_pred HHHhhhhhhhhhcccCCcchHHHHHHHHHHHH-hhhHHHHHHHHhhh
Q 011716 387 DMLTLGGMLEFFYSEAPHSMRSISTALSWCST-SMGYFLSSALVSIT 432 (479)
Q Consensus 387 ~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~lg~~~~~~l~~~i 432 (479)
|.+.+|...+++.+.+|++.||+.+|++.+.. .+|+.++..+....
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998744 68888887777654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=288.53 Aligned_cols=431 Identities=15% Similarity=0.237 Sum_probs=299.8
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
+||++..+++.|+++++|++.++++++.+.+........+++|+++||++|||++++.+..++++++.++++++.
T Consensus 36 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~----- 110 (500)
T PRK09584 36 GYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH----- 110 (500)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 578999999999999999999999999999887777778899999999349999999999999999988887631
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
....+.++|.++|+|.|...|+..++++|++|++++ +|.++++++++..|+|.++||.+++++.+++||
T Consensus 111 ----------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~-~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~ 179 (500)
T PRK09584 111 ----------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP-RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGW 179 (500)
T ss_pred ----------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch-hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 334567789999999999999999999999987652 255678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccceec--CCCCCchh--hHHH----H-HHHHHhhccccccchhhhccCCCCCCCCCc
Q 011716 162 NCSFKISAVALGLALCIFTIGFPIYRYK--RPSGSPIT--RIFK----V-IASAIRNRKASRSEMTEQIASPGATRSNDM 232 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479)
|+.|.+.++..+++++.+...++..++. +|++++.. .... . ............++..+... .....
T Consensus 180 ~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~- 254 (500)
T PRK09584 180 SVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMAL----GVVAL- 254 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHH----HHHHH-
Confidence 9999998876666655544443332222 22222211 1100 0 00000000000000000000 00000
Q ss_pred chhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhh-hcccCCCCcccCcccccccccceeeh
Q 011716 233 FRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGI-IMNRTINNFKIPTQSLTVFPLTIMLA 311 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 311 (479)
....+... +.+. .+..++++....+.+++....+|..+.|.++.+..+.. ..+++..|..+++++++++|++.+++
T Consensus 255 ~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil 331 (500)
T PRK09584 255 GIVVIFGK--EAFA-MKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMI 331 (500)
T ss_pred HHHHHHHH--HHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHH
Confidence 00000000 0001 11234455555566778888899999999988776543 35566677888899999999999999
Q ss_pred hhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhh
Q 011716 312 SIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTL 391 (479)
Q Consensus 312 ~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 391 (479)
..|+.+++..|+.+| .+..+++.+|+++.+++++.+...+.. .+++...+.+|+++.+++.++||.+.+
T Consensus 332 ~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~~~~vs~~~~~~~~~l~~~ge~~~~ 400 (500)
T PRK09584 332 GSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----ANDAGIVSVNWLIASYGLQSIGELMIS 400 (500)
T ss_pred HHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 999998876665554 347788999999999999988775432 111234677899999999999999999
Q ss_pred hhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011716 392 GGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLN 471 (479)
Q Consensus 392 ~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~ 471 (479)
|...+++.+.+|+++||+++|++.+...+|+.++..+...+.. . +-..+.....+++..+|...++++++..++
T Consensus 401 p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~-~-----~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~ 474 (500)
T PRK09584 401 GLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV-P-----DNVTDPLMSLEVYGRVFLQIGIATAVIAVL 474 (500)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-----cccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888888777754320 0 000000011223566777777666544433
Q ss_pred Hh
Q 011716 472 YI 473 (479)
Q Consensus 472 ~~ 473 (479)
.+
T Consensus 475 ~~ 476 (500)
T PRK09584 475 ML 476 (500)
T ss_pred HH
Confidence 33
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-29 Score=263.16 Aligned_cols=436 Identities=26% Similarity=0.416 Sum_probs=349.7
Q ss_pred CceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 1 MVFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 1 ~~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
++|||+.+++.+|+.+.+|++.+++..+...+.....+.++++|+++|+++||++.+.++.++..+|..++++.+. +..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998887531 110
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc-
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR- 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~- 159 (479)
.........+++..+..+|.|+.+|+..++.+|+++++++++|.++++++|++.|+|+.+++.+.+++.++.
T Consensus 80 -------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~ 152 (654)
T TIGR00926 80 -------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVG 152 (654)
T ss_pred -------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 001133456788899999999999999999999998876667999999999999999999999999998543
Q ss_pred ------chhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcc
Q 011716 160 ------GWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMF 233 (479)
Q Consensus 160 ------gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479)
+|..+|.+++++++++++++....+.+++++|++++..+..+++..+.+++.....+. .. .
T Consensus 153 ~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~------------~~-~ 219 (654)
T TIGR00926 153 CFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH------------WP-L 219 (654)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc------------cc-h
Confidence 6999999999999999988888888777666766666666666666555432211100 00 3
Q ss_pred hhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhh
Q 011716 234 RVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASI 313 (479)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (479)
.|+|.+..+ ...+++++.|++++.+.+++....+|..+.|..+.+..|..+++.++++..++++.++.++++..+++.
T Consensus 220 ~~ld~a~~~--~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~ 297 (654)
T TIGR00926 220 HWLDYAKDK--HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFV 297 (654)
T ss_pred hHHHHhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhH
Confidence 456654332 234457888999999999999999999999999999999888888777888899999999999999999
Q ss_pred hccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------------
Q 011716 314 PLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAA----------------------------- 364 (479)
Q Consensus 314 ~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~----------------------------- 364 (479)
|+.++...+..+|+. .+.++++|..+|+++.+++++.....+..++..
T Consensus 298 Pi~~~~lyp~l~~~~---~~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (654)
T TIGR00926 298 PIFDYIVYPAIAKCG---TRFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLNTDCTICDFSVLSK 374 (654)
T ss_pred HHHHHhHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEecCCCCcceEEEEec
Confidence 999977777666642 346789999999999998887765543221100
Q ss_pred -----------------------------------------------------------h--------------------
Q 011716 365 -----------------------------------------------------------A-------------------- 365 (479)
Q Consensus 365 -----------------------------------------------------------~-------------------- 365 (479)
.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (654)
T TIGR00926 375 RVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYVLLLSQGGYQLTANT 454 (654)
T ss_pred CCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEEEEEecCCcceeeee
Confidence 0
Q ss_pred -----------------------c--------------------------------------------------------
Q 011716 366 -----------------------E-------------------------------------------------------- 366 (479)
Q Consensus 366 -----------------------~-------------------------------------------------------- 366 (479)
+
T Consensus 455 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 534 (654)
T TIGR00926 455 DKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDNAKSSTFLSNQLDMG 534 (654)
T ss_pred ecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccccccccccccccccc
Confidence 0
Q ss_pred ---------C---------------CccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhH
Q 011716 367 ---------N---------------HVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGY 422 (479)
Q Consensus 367 ---------~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~ 422 (479)
| .++++.+|+++++++.+.+|.+...+..++.++++|+++|+..++++.+...+|+
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~ 614 (654)
T TIGR00926 535 IYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN 614 (654)
T ss_pred eEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 0 1113578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccC
Q 011716 423 FLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAKRY 479 (479)
Q Consensus 423 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~ 479 (479)
.+...+... + ........|..+++++++..+++.++++.|
T Consensus 615 ~~~~~~~~~----------~-------~~~~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 615 LIVVVIAEF----------E-------NFSVQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHh----------h-------cChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998776643 1 122345568888888888888888888776
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=240.84 Aligned_cols=374 Identities=11% Similarity=0.006 Sum_probs=235.7
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.....+.+.+++|.+..+.+|+.+.|.++...+.+++|+++|| +|||++++.+..++.++++++++++
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~~~~~~~a~----------- 92 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLASLAAAFSP----------- 92 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence 3444556678999999999999999999999999999999999 8999999999999999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccC-CCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQL-DHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
+.+.++++|+++|+|.+...|.....+.+.+ |+++ |++++++.....++|..+||.+++++.++.|||+.|
T Consensus 93 -----~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~---r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f 164 (495)
T PRK14995 93 -----TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ---RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVF 164 (495)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Confidence 7778999999999999999998888887776 4555 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccceecCCCCCch-hhHHHH-----HHHHHhhccccccchhhhccCCCCCCCCCcchhhhhh
Q 011716 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPI-TRIFKV-----IASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKA 239 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
++..+..++.+++.....|+.++++.++.+. ...... .....++...............-... -....+...
T Consensus 165 ~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~f~~~- 242 (495)
T PRK14995 165 LINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGA-LLLGLFIRT- 242 (495)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHH-HHHHHHHHH-
Confidence 9988776666555555555433222111111 111100 00011110000000000000000000 000000000
Q ss_pred cccCCCcchhhhhhhhhhhhhhHH---HHHHHHHHhhhc---ccchhhhhhhhcccCCCCcccCcccccccccceeehhh
Q 011716 240 LFDDTITAAQVEETKTFLGLLPIF---ASTIMMNCCLAQ---LQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASI 313 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (479)
+. ...++..+ .+.++..... .........+.. ..+.+.+...+.+ ....+.......+...+..
T Consensus 243 -e~--~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s------~~~ag~~~~~~~~~~~~~~ 312 (495)
T PRK14995 243 -QL--AASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLS------PLEAGMFMLPVMVASGFSG 312 (495)
T ss_pred -Hh--cCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHH
Confidence 00 00000000 0111111011 111111111111 1111111111111 1123333333445566777
Q ss_pred hccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhh
Q 011716 314 PLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGG 393 (479)
Q Consensus 314 ~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 393 (479)
++.+++.||.++|.. +..|+++..++...+..... ..+.+......++.|+|.++..+.
T Consensus 313 ~~~g~l~~r~g~~~~-----------~~~g~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~l~G~g~g~~~~~ 371 (495)
T PRK14995 313 PIAGILVSRLGLRLV-----------ATGGMALSALSFYGLAMTDF----------STQQWQAWGLMALLGFSAASALLA 371 (495)
T ss_pred HHHHHHHHHcCchHH-----------HHHHHHHHHHHHHHHHHhcC----------CCchHHHHHHHHHHHHhHHHHHHH
Confidence 888888877766532 56677777766665554321 123344556678889999999999
Q ss_pred hhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 394 MLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 394 ~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
....+.+..|+++++.+.++.++.+.+|+.+|+.+.+.+.
T Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 372 STSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=229.24 Aligned_cols=349 Identities=12% Similarity=0.072 Sum_probs=232.6
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCc
Q 011716 11 VAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSH 90 (479)
Q Consensus 11 ~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (479)
.+.+.+++|.|+++.|++.+.+.++..+++++.|+++|| +||||++..+..+..++++++++++
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------------- 95 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASHVLSALAW--------------- 95 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 345678999999999999999999999999999999999 8999999999999999999998886
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHH
Q 011716 91 TQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAV 170 (479)
Q Consensus 91 ~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~ 170 (479)
+.+.+++.|+++|++.+...|...+++.|++|+++ |++++++...+.++|..+||.+++.+.++.|||+.|++.++
T Consensus 96 -~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 96 -NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK---KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh---hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 77789999999999999999999999999999888 99999999999999999999999999998999999998887
Q ss_pred HHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhh
Q 011716 171 ALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQV 250 (479)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
..++.........|+.+++ ++++.++ .....
T Consensus 172 ~~~l~~~~~~~~~~~~~~~--~~~~~~~----~~~~~------------------------------------------- 202 (390)
T PRK03545 172 GALITLLLLIKLLPLLPSE--HSGSLKS----LPLLF------------------------------------------- 202 (390)
T ss_pred HHHHHHHHHHHhCCCCCCC--CcchHHH----HHHHH-------------------------------------------
Confidence 6555544433333321111 0000000 00000
Q ss_pred hhhhhhhhhh-hHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhc
Q 011716 251 EETKTFLGLL-PIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISA 329 (479)
Q Consensus 251 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~ 329 (479)
++ +...... ..+......+......+++. .+..+.+ ....+.......+..++...+.+++.||..+|.
T Consensus 203 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~s------~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-- 272 (390)
T PRK03545 203 RR-PALVSLYLLTVVVVTAHFTAYSYIEPFV-QQVAGLS------ENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-- 272 (390)
T ss_pred hC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCC------ccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH--
Confidence 00 1111100 01111111111111111111 1111111 111223333334444555566666665544331
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHH
Q 011716 330 KYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409 (479)
Q Consensus 330 ~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~ 409 (479)
+..+..+..++....... ..+.+.++...++.|++.....+.....+.+..| +.|++
T Consensus 273 ----------~~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~ 329 (390)
T PRK03545 273 ----------LLIAIALLLVCLLLLLPA------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDV 329 (390)
T ss_pred ----------HHHHHHHHHHHHHHHHHH------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHH
Confidence 444444444444333221 1234455566778888887777878888888877 57899
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 410 STALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 410 ~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
++|.++....+|..+|+.+.|.+.+ ..++...|...+++.++++..+....|
T Consensus 330 ~~g~~~~~~~~g~~~G~~~~G~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 330 AMALFSGIFNIGIGAGALLGNQVSL----------------HLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----------------ccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999988652 223455677777777777776655544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=227.98 Aligned_cols=381 Identities=12% Similarity=0.072 Sum_probs=231.8
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+...+++.+++|.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+..+..++..++++++
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~----------- 80 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG----------- 80 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc-----------
Confidence 4455667888999999999999999999999999999999999 8999999999999999999988886
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.....++|..+++.+++++.++.+||+.|+
T Consensus 81 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 152 (399)
T TIGR00893 81 -----AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE---RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFI 152 (399)
T ss_pred -----CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH---HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHH
Confidence 77789999999999999999999999999999888 9999999999999999999999999999899999999
Q ss_pred HHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCc
Q 011716 167 ISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTIT 246 (479)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
+.++..++..+..+...++.++++.+..+.+ ++...+....+ . ++ .++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--~-~~-~~~~~~--------------- 203 (399)
T TIGR00893 153 IEGVLGIIWGVLWLKFIPDPPQKAKWLTEEE----------KYIVVGGLLAE--Q-QG-KGPSTP--------------- 203 (399)
T ss_pred HHHHHHHHHHHHhhheecCCCCccccCCHHH----------Hhhcchhhccc--c-cc-ccccCC---------------
Confidence 8776655544444433333222111100000 00000000000 0 00 000000
Q ss_pred chhhhhhhhhhh---hhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhh
Q 011716 247 AAQVEETKTFLG---LLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIF 323 (479)
Q Consensus 247 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 323 (479)
+....++.++ ...................+++..+. ....+......+.......+..++..++.+++.||.
T Consensus 204 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 278 (399)
T TIGR00893 204 --KKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYL---VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL 278 (399)
T ss_pred --CccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111 11111111111111111111111111 111100011233444444555667778888888888
Q ss_pred HhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCC
Q 011716 324 ERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAP 403 (479)
Q Consensus 324 ~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P 403 (479)
++|.. .............+.......... ..+..+........+.......+..+.+..|..|
T Consensus 279 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (399)
T TIGR00893 279 LRRGK-------SLVFARKTAIIAGLVLSLLMFATN----------YVNIPYAALALVALGFFGLGAGAIGWALISDNAP 341 (399)
T ss_pred hhccc-------chhHHHHHHHHHHHHHHHHHHHhc----------cchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcC
Confidence 77631 010000001111111111111100 0112222222233333333368889999999999
Q ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 011716 404 HSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYI 473 (479)
Q Consensus 404 ~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~ 473 (479)
+++||+++|+.+....+|+.+++.+.+.+.+.. +++...|.+.+++.+++.+.++
T Consensus 342 ~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 342 GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT---------------GSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC---------------CchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765211 1145557777776666655443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=222.94 Aligned_cols=352 Identities=11% Similarity=-0.001 Sum_probs=214.0
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
...++.+.+++++|+|++|.|++.+.+.+++.+++++.|+++|| +|||+++..+......+.......+
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~---------- 77 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAGRLLDPF---------- 77 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHhc----------
Confidence 34556667788999999999999999999999999999999999 7999987766555544433222212
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
+...+++.|+++|+|.+.. +.....++|++|+++ |+++.++...+.++|..+++.+++++.+++|||+.|
T Consensus 78 ------~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~---r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f 147 (368)
T TIGR00903 78 ------NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER---RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLI 147 (368)
T ss_pred ------cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 6778999999999999864 555566799999877 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCC
Q 011716 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTI 245 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
++.+++.++..+..+...|+.++++++..+..+.. + ++.+.
T Consensus 148 ~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~-------~-------------------------~~~~l------- 188 (368)
T TIGR00903 148 IPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAV-------K-------------------------EFGAL------- 188 (368)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHH-------H-------------------------HHHHH-------
Confidence 98666655554444444444322211100000000 0 00000
Q ss_pred cchhhhhhhhhhh-hhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhH
Q 011716 246 TAAQVEETKTFLG-LLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFE 324 (479)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 324 (479)
.++ +.... ....+.....++....+.++++... + ++...+....+.. .......+++.||..
T Consensus 189 ----l~~-~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g-------~s~~~~~~~~l~~---~~g~~g~~~~~d~~~ 251 (368)
T TIGR00903 189 ----AGR-KDLWIIGAILGFGVALFDNLAIWLEAALRPA--G-------LEDIAGDAVALAI---LAGLIGVAVIPDRVA 251 (368)
T ss_pred ----HcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C-------CChHHHHHHHHHH---HHHHHHHHHhhHHhh
Confidence 000 11111 1112222233333333344333211 1 1111122221111 222233456666665
Q ss_pred hhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCc
Q 011716 325 RKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPH 404 (479)
Q Consensus 325 ~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 404 (479)
||.. +........++.++....+... .+....+....+.+++.....+..+++..|.+|+
T Consensus 252 r~~~-------r~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 311 (368)
T TIGR00903 252 RAGL-------RSIYIRAAALLIAAFFLALAFE-------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK 311 (368)
T ss_pred hhhh-------HHHHHHHHHHHHHHHHHHHHHc-------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch
Confidence 5421 1111222223333333333221 1122233344455566666667788899999999
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011716 405 SMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNY 472 (479)
Q Consensus 405 ~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~ 472 (479)
+.||+++|+.+....+|+.+++.+.+.+.. +....|.++++..+++.+..
T Consensus 312 ~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~------------------~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 312 ELHGKAAGAIGFTSRAISVALALAAMLFIS------------------SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred hhcCcccchhhHHHHHHHHHHHHHHHHHhc------------------CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988876531 23445666666666655443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=226.05 Aligned_cols=356 Identities=9% Similarity=0.011 Sum_probs=231.1
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
..+.+|.|+++++|.|+++.|++.+.+.++..+++++.|+++|| +||||+++.+.+...++.+........+.
T Consensus 34 ~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~------ 106 (392)
T PRK12382 34 PLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLAGLAYLLAAILPV------ 106 (392)
T ss_pred HhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHHHHHHHhhhcccc------
Confidence 45667778889999999999999999999999999999999999 89999999998887776544332210000
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
....+...+++.|+++|++.+...|...+++.|.+|+++ |++++++...+.++|..+||.+++++.+.+||+..+
T Consensus 107 --~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~ 181 (392)
T PRK12382 107 --SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH---SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALA 181 (392)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence 011266788999999999999999999999999999888 999999999999999999999999999989999877
Q ss_pred HHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCC
Q 011716 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTI 245 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
.+..+..++.+. .. ++.++.+++++...+..
T Consensus 182 ~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~--------------------------------------------- 212 (392)
T PRK12382 182 LTTMVLPLLAWA---FN-GTVRKVPAHAGERPSLW--------------------------------------------- 212 (392)
T ss_pred HHHHHHHHHHHH---HH-HhccCCCCCcccCchHH---------------------------------------------
Confidence 765443332221 11 11111111100000000
Q ss_pred cchhhhhhhhhhh-hhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhH
Q 011716 246 TAAQVEETKTFLG-LLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFE 324 (479)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 324 (479)
+..+...+ ..................+.++ .+ .+. . +.+.......+..++..++.+++.||.+
T Consensus 213 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~-----~~~---~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g 277 (392)
T PRK12382 213 -----SVVGLIWKPGLGLALQGVGFAVIGTFVSLYF-AS-----KGW---A-MAGFTLTAFGGAFVLMRVLFGWMPDRFG 277 (392)
T ss_pred -----HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH-Hh-----cCC---c-hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00000000 0001111111111111111111 11 110 1 1112222223334455566677766665
Q ss_pred hhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCc
Q 011716 325 RKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPH 404 (479)
Q Consensus 325 ~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 404 (479)
+|+. +..+..+..+++...... .+.+......++.+++.+...|.......+..|+
T Consensus 278 ~~~~-----------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 333 (392)
T PRK12382 278 GVKV-----------AIVSLLVETVGLLLLWLA-------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPS 333 (392)
T ss_pred CCee-----------hHHHHHHHHHHHHHHHHc-------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH
Confidence 5422 555666666666555432 1334455566788888888888888888899999
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 405 SMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 405 ~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
++||++.|++++...+|+.+++.+.+.+.+ ..+++..|.+.+++.+++.+..+.+.|
T Consensus 334 ~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (392)
T PRK12382 334 QVRGTALGGYAAFQDIAYGVSGPLAGMLAT----------------SFGYPSVFLAGAISAVLGIIVTILSFR 390 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhCchHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999987652 223456677887777777666555444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=223.44 Aligned_cols=333 Identities=13% Similarity=0.051 Sum_probs=221.1
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
....+.+.+++|.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+..+..++.+++++++
T Consensus 35 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------ 101 (406)
T PRK11551 35 GVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSLATAQAW------------ 101 (406)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc------------
Confidence 334455677899999999999999999999999999999999 8999999999999999888888775
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKI 167 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i 167 (479)
+...+.+.|++.|++.+...|...+++.|.+|+++ |+++.++.+...++|..+++.+++.+.+..+||..|++
T Consensus 102 ----~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 102 ----DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ----cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 67788899999999999999999999999999888 99999999999999999999999999888899999998
Q ss_pred HHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcc
Q 011716 168 SAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITA 247 (479)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
.+++.++.........|+.++..+++.+.+ . . .+..+.. .+
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~-~-----------------~~~~~~~-----~~- 215 (406)
T PRK11551 175 GGVGPLLLVPLLMRWLPESRAFAQAAGAGK---------------Q-R-----------------APVLRAL-----FG- 215 (406)
T ss_pred HHHHHHHHHHHHHHhCCCChhHHhccCcch---------------h-h-----------------hhhHHHH-----hh-
Confidence 776544444433333333211100000000 0 0 0000000 00
Q ss_pred hhhhhhhhhhhh-hhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhh
Q 011716 248 AQVEETKTFLGL-LPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERK 326 (479)
Q Consensus 248 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r 326 (479)
+ ...+..... ...+......+....+.+.+. .. .+.+ ....+.......+..++...+.+++.||.++|
T Consensus 216 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~-~g~s------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 285 (406)
T PRK11551 216 -E-GRATATLLLWISYFFTLIVLYFLLNWLPSLL-VG-QGLS------RSQAGLVQIAFNIGGALGSLLIGALMDRLRPR 285 (406)
T ss_pred -h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCC------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 0 000111111 111111111111111111111 11 0111 11223333344455666777788888887766
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcch
Q 011716 327 ISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSM 406 (479)
Q Consensus 327 ~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 406 (479)
.. +..+.+...+++..+... .+.+.+....++.+++.....+..+++..+..|+++
T Consensus 286 ~~-----------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 341 (406)
T PRK11551 286 RV-----------VLLIYAGILASLAALAAA-------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV 341 (406)
T ss_pred HH-----------HHHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh
Confidence 32 333444444444333321 133344455667777777778888899999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 407 RSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 407 rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
||++.|+.+....+|..+++.+.|.+.
T Consensus 342 ~g~~~g~~~~~~~~g~~~g~~~~g~l~ 368 (406)
T PRK11551 342 RGTGVGAAVAVGRLGSMAGPLLAGQLL 368 (406)
T ss_pred hhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence 999999999999999999999998765
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=223.25 Aligned_cols=356 Identities=9% Similarity=-0.002 Sum_probs=232.7
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
..+.++.++++++|.|+.+.|++.+.+.++..+++++.|+++|| +||||+++.+.++.+++.+.+.++...++
T Consensus 34 ~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~------ 106 (399)
T PRK05122 34 PLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCALSGLLYLLAGLLAA------ 106 (399)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHHHHHHHHHHhhhhhc------
Confidence 45677888899999999999999999999999999999999999 89999999999998888776655421000
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
....+...+++.|+++|++.+...+...+++.|+.|+++ |+++.++.....++|..+|+.+++++.+++||+..+
T Consensus 107 --~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~ 181 (399)
T PRK05122 107 --WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH---TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLG 181 (399)
T ss_pred --cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh---hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence 001145678899999999999999999999999999888 899999988899999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCC
Q 011716 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTI 245 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
++..+..++..+. ..+ .+++++++++..+ +.
T Consensus 182 ~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~------------------------------------~~--------- 212 (399)
T PRK05122 182 LLIMLLALLGLLL---ARP-RPAVPPVKGERLP------------------------------------FR--------- 212 (399)
T ss_pred HHHHHHHHHHHHH---Hhc-CCCCCCCCccchh------------------------------------HH---------
Confidence 8755544332221 111 1111111000000 00
Q ss_pred cchhhhhhhhhhhhh-hHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhH
Q 011716 246 TAAQVEETKTFLGLL-PIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFE 324 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 324 (479)
+..++..... ........+... .++...+.. +.+. . ..+.......+..++..++.+++.||.+
T Consensus 213 -----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~---~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 277 (399)
T PRK05122 213 -----RVLGRVWPYGMGLALASIGFGTI----ATFITLYYA--ARGW---D-GAALALTLFGVAFVGARLLFGNLINRLG 277 (399)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH--Hccc---c-cchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0001111100 011111111111 111111110 1111 0 1112222223344455566666666655
Q ss_pred hhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCc
Q 011716 325 RKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPH 404 (479)
Q Consensus 325 ~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 404 (479)
+|+ .+..+..+..++....... .+.+..+...++.|++.+...|.......+..|+
T Consensus 278 ~~~-----------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~ 333 (399)
T PRK05122 278 GLR-----------VAIVSLLVEILGLLLLWLA-------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPP 333 (399)
T ss_pred cHH-----------HHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH
Confidence 442 2555666666665555442 1344455667888999888888888888899999
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 405 SMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 405 ~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
+.||++.|+++....+|..+++.+.+.+.+ ..+++..|+..+++.+++.+....+.+
T Consensus 334 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 334 QNRGAALGAYSVFLDLSLGITGPLAGLVAS----------------WFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888877642 223566677777777766655554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=224.11 Aligned_cols=334 Identities=15% Similarity=0.109 Sum_probs=221.8
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
+++.+.+.++.|+++++|+++.+.|++.+.+.+...+.++++|+++|| +|||+++..+..+..++.+++...+
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~------ 97 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAIAH------ 97 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHhc------
Confidence 456778899999999999999999999999999999999999999999 8999999999999999999888775
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
+.+.+++.|+++|++.+...|...+++.|.+|+++ |+++.++.+...++|..+||.+++++. ++||
T Consensus 98 ----------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~ 163 (400)
T PRK11646 98 ----------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ---RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDF 163 (400)
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 66778899999999999899999999999999888 999999999999999999999999998 6899
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcc
Q 011716 162 NCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALF 241 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (479)
|+.|++.++..++..+......|+.++ ++++++. .+......
T Consensus 164 ~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~---~~~~~~~~---------------------------------- 205 (400)
T PRK11646 164 RLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPV---REGMTRVL---------------------------------- 205 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhh---HHHHHHHH----------------------------------
Confidence 999998776655544333333332110 0000000 00000000
Q ss_pred cCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhh
Q 011716 242 DDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVH 321 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 321 (479)
.+ +.... .......++....+.....+.+ +++.. +.....+....++........ ....
T Consensus 206 ---------~~-~~~~~---~~~~~~~~~~~~~~~~~~~p~~---~~~~~-~~~~~~g~l~~~~~~~~~~~~----~~~~ 264 (400)
T PRK11646 206 ---------RD-KRFVT---YVLTLTGYYMLAVQVMLMLPIM---VNDIA-GSPSAVKWMYAIEACLSLTLL----YPIA 264 (400)
T ss_pred ---------cC-chHHH---HHHHHHHHHHHHHHHHHhhhhh---HHhhc-CCchHHHHHHHHHHHHHHHHH----HHHH
Confidence 00 11111 1111111111111111111111 11110 001111222222222112111 1222
Q ss_pred hhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 011716 322 IFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSE 401 (479)
Q Consensus 322 ~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (479)
++.+|+. +..+.+..+.++.+++...++..+ +.+......++.+.+.+...|...+.+.+.
T Consensus 265 ~~~~~r~------~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~ 325 (400)
T PRK11646 265 RWSEKRF------RLEHRLMAGLLIMSLSMFPIGMVS-------------NLQQLFTLICLFYIGSIIAEPARETLSASL 325 (400)
T ss_pred HHHHHhc------chhHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhc
Confidence 3222211 122335667767676666555432 233444455677888888999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011716 402 APHSMRSISTALSWCSTSMGYFLSSALVSITNL 434 (479)
Q Consensus 402 ~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~ 434 (479)
+|++.||+++|+.++...+|..+|+.+.|.+.+
T Consensus 326 ~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 326 ADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred CCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 999999999999999999999999999998763
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=209.11 Aligned_cols=346 Identities=12% Similarity=0.080 Sum_probs=241.4
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCc
Q 011716 11 VAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSH 90 (479)
Q Consensus 11 ~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (479)
-+-+.+++|.|..++|+.++.|.++..++.|+...+.|| +.||++++..+.++.++.+++++++
T Consensus 36 Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alAp--------------- 99 (394)
T COG2814 36 LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALAP--------------- 99 (394)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 345578999999999999999999999999999999999 8999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHH
Q 011716 91 TQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAV 170 (479)
Q Consensus 91 ~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~ 170 (479)
++..+.++|++.|+..|..++...++.+|..|+++ |+++++....+..++.++|..++.++.+.+|||..|+.-.+
T Consensus 100 -~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~---~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~ 175 (394)
T COG2814 100 -SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK---RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV 175 (394)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHH
Confidence 88899999999999999999999999999999999 99999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhcccceecCCCC--CchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcch
Q 011716 171 ALGLALCIFTIGFPIYRYKRPSG--SPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAA 248 (479)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (479)
+.+++++..+...| |++.+++ .+..+..+.
T Consensus 176 l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~~---------------------------------------------- 207 (394)
T COG2814 176 LALLALLLLWKLLP--PSEISGSLPGPLRTLLRL---------------------------------------------- 207 (394)
T ss_pred HHHHHHHHHHHhCC--CccCCCCCCcchhHHHHH----------------------------------------------
Confidence 88888777777666 1211111 111000000
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCc-ccCcccccccccceeehhhhccchhhhhhHhhh
Q 011716 249 QVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNF-KIPTQSLTVFPLTIMLASIPLYERSVHIFERKI 327 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~ 327 (479)
-.++++ ......+..........+++. ...++.. .+. ....++.....++...+.+.+.+++.|| ..|.
T Consensus 208 --l~~p~v---~~~l~~t~l~~~g~F~~ftYi---~P~L~~v-~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~ 277 (394)
T COG2814 208 --LRRPGV---LLGLLATFLFMTGHFALYTYI---RPFLESV-AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR 277 (394)
T ss_pred --hcCchH---HHHHHHHHHHHcchhhhHHhH---HHHHHHc-cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh
Confidence 000011 111222222222211112211 1111111 111 1123455555677778888888888887 3332
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchH
Q 011716 328 SAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMR 407 (479)
Q Consensus 328 ~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r 407 (479)
. +.....+..+.++.+.... .+.+..+...++.++.........+.-..+.. ++.+
T Consensus 278 ~-----------l~~~~~l~a~~~l~l~~~~------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~ 333 (394)
T COG2814 278 A-----------LIAALLLLALALLALTFTG------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAA 333 (394)
T ss_pred H-----------HHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCch
Confidence 2 4555566666666655542 12344444445555554444444444444433 4669
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 011716 408 SISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIY 474 (479)
Q Consensus 408 g~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~ 474 (479)
+.+.+++....++|..+|..+.|.+.+ +.++....++.+.+.+++....+.
T Consensus 334 ~~a~sl~~aa~nlgia~GA~lGG~v~~----------------~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 334 DLAGSLNVAAFNLGIALGAALGGLVLD----------------ALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998752 234455667777777766655544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=221.53 Aligned_cols=335 Identities=10% Similarity=0.063 Sum_probs=218.8
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
++.+.+.++.|+++++|+++.++|++.+.+.++..+.+++.|+++|| +|||+++..+..+..++.++.++.+
T Consensus 23 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~~------- 94 (395)
T PRK10054 23 RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLVN------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHh-------
Confidence 45677889999999999999999999999999999999999999999 8999999999999988888888775
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchh
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWN 162 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~ 162 (479)
+.+.+++.|.+.+.+.+...|+..++..|..|+++ |++++++.+...++|.++||.+++++.. .+|+
T Consensus 95 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~ 161 (395)
T PRK10054 95 ---------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS---KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSIN 161 (395)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccC
Confidence 55567777888888888888889999999999877 9999999999999999999999999875 7999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhccc
Q 011716 163 CSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFD 242 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
.+|++.+++.++.++......++.+ ++++++.++ +++. +
T Consensus 162 ~~f~~~~~~~~i~~i~~~~~~~~~~--~~~~~~~~~----------~~~~---~-------------------------- 200 (395)
T PRK10054 162 LPFWLAAICSAFPLVFIQIWVQRSE--KAIATETGS----------VWSP---S-------------------------- 200 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccc--cccccchhh----------hhhh---h--------------------------
Confidence 9999877776655444333222211 111000000 0000 0
Q ss_pred CCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhh
Q 011716 243 DTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHI 322 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 322 (479)
+....|+... ...........+.........+....... +......+.....+........+..+++.||
T Consensus 201 ------~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 270 (395)
T PRK10054 201 ------VLLQDKALLW---FTCSGFLASFVSGAFASCISQYVMVVADS-DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA 270 (395)
T ss_pred ------hhccCceehH---HHHHHHHHHHHHHHhhhhHHHHHHHhccc-chHHHHHHHHHHhhhhheeeehhHHHHHHcc
Confidence 0000011111 11111111111111111111111011100 0000011222333333333333444444444
Q ss_pred hHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccC
Q 011716 323 FERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEA 402 (479)
Q Consensus 323 ~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (479)
..+| +.+..++++..+++....... .+.+.+....++.++|+....|..++.+.+.+
T Consensus 271 ~~~~-----------~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~ 327 (395)
T PRK10054 271 ANIR-----------PLMTAGTLCFVIGLVGFIFSG------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIA 327 (395)
T ss_pred CCch-----------hHHHHHHHHHHHHHHHHHHcc------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 3333 336667766666665554321 13344455678999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 403 PHSMRSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 403 P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
|+++|+++.+..+ ...+|..+||.+.|.+.
T Consensus 328 p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~ 357 (395)
T PRK10054 328 PPGMKASYFSAQS-LGWLGAAINPLVSGVIL 357 (395)
T ss_pred CcccceehHhHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999998765 56689999999998876
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=220.67 Aligned_cols=160 Identities=8% Similarity=-0.064 Sum_probs=139.9
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.++..+.+++++|+++.+.|++.+++.++..+++++.|+++|| +|||+++..+.+++++++.++++++
T Consensus 27 ~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~----------- 94 (412)
T TIGR02332 27 IGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWGIASTATMFAT----------- 94 (412)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 3445568889999999999999999999999999999999999 8999999999999999999999886
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh------ccc
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE------NRG 160 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~------~~g 160 (479)
+...+++.|+++|++.++..|...+++.|++|+++ |++..+++....++|.++++.+++++.+ ..|
T Consensus 95 -----~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g 166 (412)
T TIGR02332 95 -----GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF---RARANALFMIAMPVTMALGLILSGYILALDGLMALKG 166 (412)
T ss_pred -----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 67789999999999999999999999999999888 9999999999999999999999998864 369
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccc
Q 011716 161 WNCSFKISAVALGLALCIFTIGFPIY 186 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~~~~~ 186 (479)
||+.|++.++..++..+..++..|+.
T Consensus 167 wr~~f~~~~~~~l~~~~~~~~~~~~~ 192 (412)
T TIGR02332 167 WQWLFLLEGFPSVILGVMTWFWLDDS 192 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999987776555444444444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=219.80 Aligned_cols=353 Identities=10% Similarity=0.034 Sum_probs=229.9
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+.+.+++.+++|++.++.+++.+.+.++..+++++.|+++|| +|||+++..+..+.+++.+++++++
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~----------- 89 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD----------- 89 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH-----------
Confidence 3456777888999999999999999999999999999999999 8999999999999999999999887
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
+.+.+++.|++.|++.+...+.....+.|++| ++ |+++.++...+.++|..+++.+.+.+.+..|||+.|+
T Consensus 90 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~ 160 (377)
T TIGR00890 90 -----SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK---RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFI 160 (377)
T ss_pred -----HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc---cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHH
Confidence 77788999999999999988888888888886 45 7888999999999998887767777777789999999
Q ss_pred HHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCc
Q 011716 167 ISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTIT 246 (479)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
+.++..++..+..+...++.++++.+++. + ..+ ++ .++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--~~~-------------~~-~~~~~~-------- 201 (377)
T TIGR00890 161 YMGIIFLLVIVLGAFLIGYPPGQLIKTNI---------------E--VSV-------------KD-YTVWEM-------- 201 (377)
T ss_pred HHHHHHHHHHHHHHHheecCchhccccCc---------------c--cch-------------hh-hhHHHH--------
Confidence 88777655544444333221111000000 0 000 00 000000
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhh
Q 011716 247 AAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERK 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r 326 (479)
.++ +.... +.................+.........+ ....+.......+..++..++.+++.||++||
T Consensus 202 ---~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 270 (377)
T TIGR00890 202 ---LRT-PQFWV---LYLSFFLNAVSGLLLIGLYKPYGQSLGLS----DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ 270 (377)
T ss_pred ---HcC-ccHHH---HHHHHHHHhHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 11111 11111111111100111111111111100 11223344445556667778888888888776
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcch
Q 011716 327 ISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSM 406 (479)
Q Consensus 327 ~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 406 (479)
.. +..+.++..++........ ...........++.+++.+...+....+..|..|+++
T Consensus 271 ~~-----------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 328 (377)
T TIGR00890 271 KT-----------MSIVFGISAVGMAAMLFIP-----------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN 328 (377)
T ss_pred hh-----------hhHHHHHHHHHHHHHHHcc-----------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh
Confidence 43 5556666666655554421 1122223334456666666667777788899999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHH
Q 011716 407 RSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFIN 468 (479)
Q Consensus 407 rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~ 468 (479)
|+++.|+.+....+|+.+++.+.+.+.+ ..++...|.+.+++.+++
T Consensus 329 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 329 SAANYGFLYTAKAVAGIFGGLIASHALT----------------EIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHh----------------hhchhhHHHHHHHHHHHh
Confidence 9999999999999999999999987642 223455676766666554
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=231.10 Aligned_cols=382 Identities=10% Similarity=0.035 Sum_probs=237.1
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
+.....+.+.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||++++.+..++.+++++++.++
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---------- 88 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCGVAP---------- 88 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhCcC----------
Confidence 34455566678999999999999999999999999999999999 8999999999999999999998876
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
+...+++.|+++|++.+...|...+++.|.+|+++ |+++.+++.....+|..+||.+++++.+++|||+.|
T Consensus 89 ------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 89 ------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK---RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred ------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 67789999999999999999999999999999888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccceecCCCCCchh-hHHHH-----HHHHHhhccccccchhhhccCCCCCCCCCcchhh-hh
Q 011716 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPIT-RIFKV-----IASAIRNRKASRSEMTEQIASPGATRSNDMFRVL-DK 238 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 238 (479)
++.++..++..+......|+.++++.++.+.. ..... ......+.+.....++...........-....+. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE 239 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 98777665555444444443221111111111 00000 0000011000000000000000000000000000 00
Q ss_pred hcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccch
Q 011716 239 ALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYER 318 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (479)
...+++....+.-..+.... ...........+.......... +....+......+.......+..++..++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~---~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 313 (485)
T TIGR00711 240 LTDDNPLVDLRLFKYRNFTI---GCVYMSLLGLGLYGSFYLLPLY---LQQVLGYTALQAGLHILPVGLAPMLSSPIAGR 313 (485)
T ss_pred HcCCCCccCHHHHcCCChHH---HHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000011111 1111111111111111111111 11111000112234444445566777788888
Q ss_pred hhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011716 319 SVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFF 398 (479)
Q Consensus 319 l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 398 (479)
+.||.++|.. +..+.++..++...+..... ...+.+......++.+++.+...+......
T Consensus 314 l~~r~~~~~~-----------~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~ 373 (485)
T TIGR00711 314 MGDKIDPRKL-----------VTIGLILYAVGFYWRAFTFT---------PDTPFLAIALPQFIRGFGMGCFFMPLTTIA 373 (485)
T ss_pred HHhhcCcHHH-----------HHHHHHHHHHHHHHHhccCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877766643 66677777766666552110 123445566667889999999888888888
Q ss_pred cccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 399 YSEAPHSMRSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 399 ~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
.+..|+++||+++|+.++.+.+|+.+|+.+.+.+.
T Consensus 374 ~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 374 LSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred HhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998864
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=216.78 Aligned_cols=355 Identities=12% Similarity=0.095 Sum_probs=220.4
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHH-HHHHHHHHHHHHHHHhhhccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFIL-FCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
....+.++.|+++++|.++.+.|++.+.+.+...+.+++.|+++|| +||||.++. +..+..++..+++.++
T Consensus 14 ~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~------- 85 (375)
T TIGR00899 14 ALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAWNR------- 85 (375)
T ss_pred HHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHhcc-------
Confidence 4456788899999999999999999999999999999999999999 899887654 5555556667777765
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhh--hhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISA--FFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
+.+.+++.|++++.+.+...|...++..|..|+++ |.+ ..+......++|..+||.+++++.+.+|
T Consensus 86 ---------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~ 153 (375)
T TIGR00899 86 ---------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG---REAVMFSSVMRAQISLAWVIGPPLAFWLALGFG 153 (375)
T ss_pred ---------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc
Confidence 56677788999888888888988888888877655 443 3566777889999999999999999899
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhc
Q 011716 161 WNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKAL 240 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (479)
||+.|++.++..++..+..+...|+.+++++++++ + . ++.+..
T Consensus 154 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~---~------------------~~~~~~- 196 (375)
T TIGR00899 154 FTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT---------------R---L------------------EVRGLL- 196 (375)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC---------------c---c------------------hhhhhh-
Confidence 99999998877665555544444432221111000 0 0 000000
Q ss_pred ccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhh
Q 011716 241 FDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSV 320 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 320 (479)
+..+.+... ...+............. +.+..+..+.+.. ..+..........+...++.+++.
T Consensus 197 --------~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~g~l~ 259 (375)
T TIGR00899 197 --------ASRDTRLLF--VACTLMWGCNILYIINM-PLLIIHELGLPDK------LAGLMMGTAAGLEIPFMLLAGYLI 259 (375)
T ss_pred --------cCcchHHHH--HHHHHHHHHHHHHHhhh-HHHHHHHcCCCHH------HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 000011110 00111111111111111 1121111111111 112222222223344456667777
Q ss_pred hhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 011716 321 HIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYS 400 (479)
Q Consensus 321 ~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 400 (479)
||+++|+. +..+.++..+.+...... .+.+......++.+++.+...+..+.+..|
T Consensus 260 ~r~g~~~~-----------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 315 (375)
T TIGR00899 260 KRFGKRRL-----------MLLAALAGVAFYTGLAAD-------------NSLWALLMLQLLNAIFIGILAGIGMLYFQD 315 (375)
T ss_pred HHhcchhH-----------HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665532 344444433333332221 133444555677788888888888888888
Q ss_pred cCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 011716 401 EAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYI 473 (479)
Q Consensus 401 ~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~ 473 (479)
..|++ +++++++++....+|..+++.+.+.+.+ ..+++..|+..+++.+++.+.+.
T Consensus 316 ~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 316 LMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAE----------------RWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred hCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccchhHHHHHHHHHHHHHHHHh
Confidence 88875 6799999999999999999999987652 12245557777777776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=215.77 Aligned_cols=338 Identities=11% Similarity=0.003 Sum_probs=222.9
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
...+|.|.. +++.++.+.+++.+.+.++..+++++.|+++|| +||||+++.+..+..++..+.......
T Consensus 19 ~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~--------- 87 (365)
T TIGR00900 19 QVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLPFVALL--------- 87 (365)
T ss_pred HHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 345566654 689999999999999999999999999999999 899999999999988888877766411
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
...+.+.+++.|++.|++.+...|...+++.|++|+++ |++..++.....++|.++||.+++++.++.|||+.|+
T Consensus 88 --~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 88 --GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ---LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 01256678899999999999999999999999999887 9999999999999999999999999999899999999
Q ss_pred HHHHHHHHHHHHHHhhcccceecCCCCCchh-hHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCC
Q 011716 167 ISAVALGLALCIFTIGFPIYRYKRPSGSPIT-RIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTI 245 (479)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
+.++..+++.+..+..+++.++ ++++++.+ +..+.. ++ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~------------------------~~---------- 203 (365)
T TIGR00900 163 VDAVGFAISALLIVSVRIPELA-ASEIQALSNAVLRDT----RE------------------------GI---------- 203 (365)
T ss_pred HHHHHHHHHHHHHHhcccccCC-CccccccchhHHHHH----Hh------------------------HH----------
Confidence 8777655554443333221111 10111100 000000 00 00
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHHhhh----cccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhh
Q 011716 246 TAAQVEETKTFLGLLPIFASTIMMNCCLA----QLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVH 321 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 321 (479)
++....+.... ...........+. ...+.+..+..+.+ ....+.......+..++..++.+++.|
T Consensus 204 --~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (365)
T TIGR00900 204 --KFVLKNPLLRT---LLLLALLFNLVFAPAIVALFPYVQSKYLGRG------STHYGWVLAAFGLGALLGALLLGLLGR 272 (365)
T ss_pred --HHHHcCcHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011111 1111111111111 11122222111111 112233333334444555555666555
Q ss_pred hhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 011716 322 IFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSE 401 (479)
Q Consensus 322 ~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (479)
|.++|. .+..+..+.+++........ + +.+......++.+++.+...+....+..+.
T Consensus 273 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 329 (365)
T TIGR00900 273 YFKRMA-----------LMTGAIFVIGLAILVVGLTP-----------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRR 329 (365)
T ss_pred HhchhH-----------HHHHHHHHHHHHHHHHHhhc-----------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544432 24445555555555544421 1 245566677889999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 402 APHSMRSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 402 ~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
.|+++||++.|+.+....++..+++.+.+.+.
T Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 330 VPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=218.68 Aligned_cols=334 Identities=16% Similarity=0.182 Sum_probs=216.7
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+.++.++.+++|.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+..+.+++..++.+++
T Consensus 16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~----------- 83 (352)
T PF07690_consen 16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAFAS----------- 83 (352)
T ss_dssp HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhhhh-----------
Confidence 3444548889999999999999999999999999999999999 8999999999999999966666553
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
+.+.+++.|++.|++.+...+...+++.|++|+++ |++.++......++|.+++|.+++++.++.+||+.|+
T Consensus 84 -----~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~ 155 (352)
T PF07690_consen 84 -----NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE---RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFL 155 (352)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHH
T ss_pred -----hHHHHhhhccccccccccccccccccccccchhhh---hhhccccccchhhhhhhcccchhhhhhhccccccccc
Confidence 55589999999999999999999999999999988 9999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCc
Q 011716 167 ISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTIT 246 (479)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
+.++..++..++.....++.+++++++++.++. .+.. .++.+.
T Consensus 156 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------~~~~--------------~~~~~~-------- 198 (352)
T PF07690_consen 156 ISAILSLIAAILFILFLPEPPPPRERESPKESE---------------SKKP--------------KPLKPG-------- 198 (352)
T ss_dssp HHHHHHHHHHHHHHCCC---STTTT--SSTTTT-----------------HH--------------HCCCH---------
T ss_pred cccchhhhhhhhHhhhhhhcccccccccccccc---------------cccc--------------cccccc--------
Confidence 988887766554333333211111111110000 0000 000000
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHHhhhcccc---hhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhh
Q 011716 247 AAQVEETKTFLGLLPIFASTIMMNCCLAQLQT---FSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIF 323 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 323 (479)
.+.....+... ............+..... .+..+..+.+ + ....+....+..+...+..++.+++.||+
T Consensus 199 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (352)
T PF07690_consen 199 FKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFS----G-PSQAGLLFSIFGIVGIIGSLLAGRLSDRF 270 (352)
T ss_dssp CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC----T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhccCCC----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00001111111 111111111111111111 1111111111 0 01222223333444455566777777765
Q ss_pred HhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCC
Q 011716 324 ERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAP 403 (479)
Q Consensus 324 ~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P 403 (479)
.+|.. .........+....+..... ..+..+.....++.+++.+...+....+..+..|
T Consensus 271 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 329 (352)
T PF07690_consen 271 GRRRR-----------LLIAILLLILGALGLLLLPF----------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVP 329 (352)
T ss_dssp TCHHH-----------HHHHHHHHHHHHHHHCCSHH----------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCH
T ss_pred CcHHH-----------HHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 54421 33333333333333322211 1234555667788999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhHHHHH
Q 011716 404 HSMRSISTALSWCSTSMGYFLSS 426 (479)
Q Consensus 404 ~~~rg~~~g~~~~~~~lg~~~~~ 426 (479)
+++||++.|+.++...+|+.++|
T Consensus 330 ~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 330 PEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-24 Score=224.74 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=135.1
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+.+.+++.+++|+++.+.+++.+++.++..++++++|+++|| +|||+++++++++.+++.+++++++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~----------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ----------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 4556667778999999999999999999999999999999999 8999999999999999999998886
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc--------
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN-------- 158 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~-------- 158 (479)
+.+.+++.|++.|+|.|+..|...++++|.+|+++ |++.+++......+|.++++.++.++..+
T Consensus 254 -----s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~---Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g 325 (742)
T TIGR01299 254 -----GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK---RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMG 325 (742)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccc
Confidence 67789999999999999999999999999999888 89999998889999999999887766543
Q ss_pred -----cchhhHHHHHHHHHHHHHHHHHhhcccc
Q 011716 159 -----RGWNCSFKISAVALGLALCIFTIGFPIY 186 (479)
Q Consensus 159 -----~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 186 (479)
.+||+.|++.++..++.++. .+..|+.
T Consensus 326 ~~~~~~gWR~l~~i~~lp~ll~ll~-~~~lPES 357 (742)
T TIGR01299 326 SAYQFHSWRVFVIVCAFPCVFAIGA-LTFMPES 357 (742)
T ss_pred cccccccHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence 36888888777665544433 3334443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=215.54 Aligned_cols=347 Identities=12% Similarity=0.054 Sum_probs=221.3
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
.+.+.+++++|+|.++.+++.+.+.++..+++++.|+++|| +|||+++..+..+++++++++++++
T Consensus 30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~------------- 95 (393)
T PRK09705 30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP------------- 95 (393)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc-------------
Confidence 34445678999999999999999999999999999999999 8999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc-chhhHHHH
Q 011716 89 SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR-GWNCSFKI 167 (479)
Q Consensus 89 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~-gw~~~f~i 167 (479)
+...++++|+++|+|.+...+..+.++.|++| ++ |+++.+.+..+.+.|..+|+.+++++.++. +||..+.+
T Consensus 96 ---~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~---~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 ---QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR---TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred ---chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc---chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 66688899999999999999999999999986 56 889999999899999999999999998875 89988876
Q ss_pred HHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcc
Q 011716 168 SAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITA 247 (479)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
.++..++.+...+...++.+++++++ + .... +
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~-------------~----------------- 200 (393)
T PRK09705 169 WALPAVVALFAWWWQSAREVASSHKT-T-----------------TTPV-------------R----------------- 200 (393)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCC-C-----------------cCCc-------------c-----------------
Confidence 55544443333332222111100000 0 0000 0
Q ss_pred hhhhhhhhhhhh-hhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhh
Q 011716 248 AQVEETKTFLGL-LPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERK 326 (479)
Q Consensus 248 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r 326 (479)
...+ ++.... .........+.....+.++++.+ .+.+ ....+.......+..++..++.+++.||..+|
T Consensus 201 -~l~~-~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s------~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~ 270 (393)
T PRK09705 201 -VVFT-PRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGAS------AQYSGSLLALMTLGQAAGALLMPAMARHQDRR 270 (393)
T ss_pred -cccC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC------hhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 0000 111111 11111112222222222222211 1111 11223333344455555666666665555443
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCC-cc
Q 011716 327 ISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAP-HS 405 (479)
Q Consensus 327 ~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P-~~ 405 (479)
. .+..+..+..++...+.... . +.... ..++.+++.+...|.......+..| ++
T Consensus 271 ~-----------~~~~~~~l~~~~~~~~~~~~-----------~-~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 325 (393)
T PRK09705 271 K-----------LLMLALVLQLVGFCGFIWLP-----------L-QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA 325 (393)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHcc-----------c-hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH
Confidence 2 25556666555555443221 1 11111 1244567777777777666667774 67
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 011716 406 MRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIY 474 (479)
Q Consensus 406 ~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~ 474 (479)
.+|+..|+.+....++..++|.+.+.+.+.+ +++...|.+.++++++..+....
T Consensus 326 ~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 326 IAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS---------------GNYLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------CCchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998876322 12344466655555555444443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-24 Score=216.54 Aligned_cols=144 Identities=12% Similarity=0.032 Sum_probs=130.7
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCch
Q 011716 12 AYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHT 91 (479)
Q Consensus 12 ~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (479)
+.+.+++|+++++.+++.+.+.++..++++++|+++|| +|||+++..+..+.+++.++++.++
T Consensus 47 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---------------- 109 (434)
T PRK11663 47 PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFSS---------------- 109 (434)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHHh----------------
Confidence 34456799999999999999999999999999999999 8999999999999999999988886
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHH
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVA 171 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~ 171 (479)
+.+.+.+.|++.|++.|...+...+++.|++|+++ |++++++++...++|..++|.+++++.+.+|||+.|++.++.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~ 186 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE---RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGII 186 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 67788889999999999999999999999999888 999999999999999999999999999999999999987765
Q ss_pred HHHH
Q 011716 172 LGLA 175 (479)
Q Consensus 172 ~~~~ 175 (479)
.++.
T Consensus 187 ~~~~ 190 (434)
T PRK11663 187 AIVV 190 (434)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=212.20 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=135.2
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+.+|. +.+++|+++++.++..+.+.++..+++++.|+++|| +|||++++.+..+.+++.+++++++
T Consensus 40 ~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~----------- 106 (394)
T PRK10213 40 VSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFAN----------- 106 (394)
T ss_pred HhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHC-----------
Confidence 334444 457899999999999999999999999999999999 8999999999999999999888875
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
+.+.+++.|+++|++.+...|...+++.|++|+++ |+++.+......++|..+||.+++++.+++|||+.|+
T Consensus 107 -----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 178 (394)
T PRK10213 107 -----SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT---VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN 178 (394)
T ss_pred -----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 77899999999999999999999999999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011716 167 ISAVALGLALCI 178 (479)
Q Consensus 167 i~~~~~~~~~~~ 178 (479)
+.+++.++..+.
T Consensus 179 ~~~~l~~~~~l~ 190 (394)
T PRK10213 179 AAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHHHHH
Confidence 877655544433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=222.07 Aligned_cols=390 Identities=10% Similarity=-0.050 Sum_probs=224.1
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
...+.+.+++|+++++.|++.+++.+++.++++++|+++|| +|||+++..+.++.+++.++.+.... .
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-----------~ 117 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLG-----------S 117 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHh-----------c
Confidence 33456678999999999999999999999999999999999 89999999998888887776665310 0
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc---chhhHH
Q 011716 89 SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR---GWNCSF 165 (479)
Q Consensus 89 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~---gw~~~f 165 (479)
...+...+++.|+++|++.+...|...++++|++|+++ |++++++...+.++|.++++.+..++.+.. +||..|
T Consensus 118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f 194 (467)
T PRK09556 118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK---RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF 194 (467)
T ss_pred ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc---eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence 01167789999999999999999999999999999988 999999999999999999999887776643 599888
Q ss_pred HHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCC
Q 011716 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTI 245 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
.+.++..++..+..+...++.+++.+..++ ++. .++....+++ ..+.++ .
T Consensus 195 ~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~~--------~~~~~~~~~~--------~~~~~~-~------------ 244 (467)
T PRK09556 195 IFPSIIALIIGFIGLRYGSDSPEELGWGKA-EEI--------FGEPISEEDK--------ETESTD-M------------ 244 (467)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hhc--------ccCccchhhh--------cccccc-C------------
Confidence 877766554444334433332222111000 000 0000000000 000000 0
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHH---hhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhh
Q 011716 246 TAAQVEETKTFLGLLPIFASTIMMNC---CLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHI 322 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 322 (479)
+..+ .-.+..++...++.......+ .+.....+.+.+ +....+-.....+.......+..++..++.+++.||
T Consensus 245 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~y---l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr 320 (467)
T PRK09556 245 TKWQ-IFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVY---AFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL 320 (467)
T ss_pred cHHH-HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000111221112211111111 111111111111 111110001122333333455667888888999988
Q ss_pred hHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccC
Q 011716 323 FERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEA 402 (479)
Q Consensus 323 ~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (479)
+++|.. ...+..+..++........ ..+........++.|+..............|..
T Consensus 321 ~g~r~~-----------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 378 (467)
T PRK09556 321 ANGRRA-----------LVACIALALIIFTLGVYQH-----------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFV 378 (467)
T ss_pred HCCCch-----------HHHHHHHHHHHHHHHHHHh-----------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 876521 2222222222221222111 112333334444445432222222235666999
Q ss_pred CcchHHHHHHHHHHHHhh-hHHHHHHHHhhhhc-cccCCCCccc-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 403 PHSMRSISTALSWCSTSM-GYFLSSALVSITNL-VSGKFGGEWL-GGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 403 P~~~rg~~~g~~~~~~~l-g~~~~~~l~~~i~~-~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
|++.||+++|+.+....+ |..+++.+.|.+.+ .+. ++. +. . ...+++..|++++++.+++.+.++..
T Consensus 379 p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~----g~~~~~-~-~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 379 PKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKN----GTPIFG-Y-TLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred chhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccc----cccccc-c-cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988886 77999999998874 110 000 00 0 01235666777777777776655544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-24 Score=218.29 Aligned_cols=380 Identities=11% Similarity=0.045 Sum_probs=228.4
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
+.+.+.+|.+. +++|.++.+.+++.+.+.++..++.+++|+++|| +|||++++.+..+.+++.+++++++
T Consensus 27 ~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~-------- 96 (471)
T PRK10504 27 TIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTLGSLFCALSG-------- 96 (471)
T ss_pred HHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 34455566665 5799999999999999999999999999999999 8999999999999999988887765
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+...+++.|+++|++.+...|...+++.|.+|+++ |+++.+......++|..+||.+++++.++.|||+
T Consensus 97 --------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~ 165 (471)
T PRK10504 97 --------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ---YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHW 165 (471)
T ss_pred --------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHH
Confidence 66678899999999999999999999999999877 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHH---H--HHHhhccccccchhhhccCCCCCCCCCcchh-hh
Q 011716 164 SFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVI---A--SAIRNRKASRSEMTEQIASPGATRSNDMFRV-LD 237 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 237 (479)
.|++..+...+..+......++.+.++++.+......... . ....+.+...... ...........-...-+ .+
T Consensus 166 ~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 244 (471)
T PRK10504 166 IFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSP-LAIAGLVAVGVVALLLYLLH 244 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcch-HHHHHHHHHHHHHHHHHHHH
Confidence 9998877655555544444443222111111111100000 0 0000000000000 00000000000000000 00
Q ss_pred hhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhc---ccchhhhhhhhcccCCCCcccCcccccccccceeehhhh
Q 011716 238 KALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQ---LQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIP 314 (479)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (479)
.....++....+....+.... ...........+.. ..+++.++..+.+ ....+.......+..+...+
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~ 315 (471)
T PRK10504 245 ARNNNRALFSLKLFRTRTFSL---GLAGSFAGRIGSGMLPFMTPVFLQIGLGFS------PFHAGLMMIPMVLGSMGMKR 315 (471)
T ss_pred HhcCCCCccCHHHhcccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000111111 11111222222111 1122222111111 11122222222333344446
Q ss_pred ccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhh
Q 011716 315 LYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGM 394 (479)
Q Consensus 315 l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 394 (479)
+.+++.||+++|.. +..+.++..+....+..... ....+.+....++.+++.+...+..
T Consensus 316 ~~~~l~~r~g~~~~-----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (471)
T PRK10504 316 IVVQVVNRFGYRRV-----------LVATTLGLALVSLLFMLVAL----------LGWYYLLPFVLFLQGMVNSTRFSSM 374 (471)
T ss_pred HHHHHHHHcCchHH-----------HHHHHHHHHHHHHHHHhccc----------cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777765533 55666666655554443211 1122333445677788888888899
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhcc
Q 011716 395 LEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLV 435 (479)
Q Consensus 395 ~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~ 435 (479)
+....+..|++.+|+++|+.++.+.+|..+|+.+.+.+...
T Consensus 375 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 375 NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=215.66 Aligned_cols=363 Identities=11% Similarity=0.043 Sum_probs=233.0
Q ss_pred ehhHHHHHHhhhhcCCChhh-----HHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011716 5 SNAINFVAYFLKSMHYPAAE-----SAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSR 79 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~-----~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (479)
...+.++.|++ ++|.+..+ .|++.+.+.++..+++++.|+++|| +|||+++..+..+..++..++...+
T Consensus 32 ~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---- 105 (408)
T PRK09874 32 LVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMVLMGLAQ---- 105 (408)
T ss_pred HhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHHHHHHHh----
Confidence 34556777764 68988665 4889999999999999999999999 8999999999999999888887765
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR 159 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~ 159 (479)
+.+.+++.|++.|++.+ ..+...+++.|++|+++ |++..+......++|..++|.+++.+.+.+
T Consensus 106 ------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 169 (408)
T PRK09874 106 ------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK---SGWALGTLSTGGVSGALLGPLAGGLLADSY 169 (408)
T ss_pred ------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788899999999865 56788889999998877 899999999999999999999999999889
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhh
Q 011716 160 GWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKA 239 (479)
Q Consensus 160 gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
+||+.|++.++..++..+..+...++.++ +++++..... ++ .++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~-------------------------~~~~- 214 (408)
T PRK09874 170 GLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKKEMLHM-------RE-------------------------VVTS- 214 (408)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhhHH-------HH-------------------------HHHh-
Confidence 99999998877766555444443332111 1100000000 00 0000
Q ss_pred cccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchh
Q 011716 240 LFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERS 319 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 319 (479)
.++ ++... .+...............+.+..+......+........+....+..+..++..+..+++
T Consensus 215 ----------~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l 281 (408)
T PRK09874 215 ----------LKN-PKLVL--SLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKL 281 (408)
T ss_pred ----------CcC-CchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01111 01111111111111111222111111100100000011122222334445556667777
Q ss_pred hhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 011716 320 VHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFY 399 (479)
Q Consensus 320 ~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 399 (479)
.||+++|.. +..+.++..+..+..... .+.+.+....++.+++.+...|...+...
T Consensus 282 ~dr~g~~~~-----------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (408)
T PRK09874 282 GDRIGPEKI-----------LITALIFSVLLLIPMSFV-------------QTPLQLGILRFLLGAADGALLPAVQTLLV 337 (408)
T ss_pred Hhccccchh-----------HHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 777766532 455555554444444332 13444555667889999999999999999
Q ss_pred ccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 400 SEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 400 ~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
+..|++.||+..++++....+|..+|+.+.+.+.+ ..++...|++.+++.+++.+......+
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----------------NYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh----------------hcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987652 223456688888877776665544333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=217.06 Aligned_cols=362 Identities=13% Similarity=0.028 Sum_probs=211.7
Q ss_pred cCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHH
Q 011716 18 MHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILY 97 (479)
Q Consensus 18 l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (479)
+|.++.+.+++.+++.++..++++++|+++|| +|||++++.+..++.++.++++++... .... ..++......++
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~---~~~~-~~~~~~~~~~l~ 124 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFG---FTSI-GPDNTGYVPEFV 124 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccc---cccc-cccchhHHHHHH
Confidence 38999999999999999999999999999999 899999999999999988887764200 0000 001222456788
Q ss_pred HHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh--------hccchhhHHHHHH
Q 011716 98 TGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE--------ENRGWNCSFKISA 169 (479)
Q Consensus 98 ~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~--------~~~gw~~~f~i~~ 169 (479)
++|+++|++.|+..|...++++|++|+++ |+++++.......+|..+++.+++.+. +.+|||+.|++.+
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~---rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~ 201 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHI---RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEA 201 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCChhh---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHH
Confidence 99999999999999999999999999888 999999999999999999888776553 3569999999877
Q ss_pred HHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchh
Q 011716 170 VALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQ 249 (479)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (479)
+..++..+. ....|+.++...++++.++..+.. ....+.. +. ...++..+.. ... +
T Consensus 202 ~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~-~~~~~~~----~~---------------~~~~~~~~~~--~~~-~ 257 (479)
T PRK10077 202 IPALLFLML-LYFVPETPRYLMSRGKQEQAEGIL-RKIMGNT----LA---------------TQALQEIKHS--LDH-G 257 (479)
T ss_pred HHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHH-HHHcCCh----hH---------------HHHHHHHHHH--HHH-h
Confidence 666554433 333343221100011111000000 0000000 00 0000000000 000 0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhcccch--hhhhhhhcccCCCCccc-CcccccccccceeehhhhccchhhhhhHhh
Q 011716 250 VEETKTFLGLLPIFASTIMMNCCLAQLQTF--SVQQGIIMNRTINNFKI-PTQSLTVFPLTIMLASIPLYERSVHIFERK 326 (479)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r 326 (479)
.+..+..+...............+.+.... ............ +... ..........+..++..++.+++.||+++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~-g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r 336 (479)
T PRK10077 258 RKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTL-GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 336 (479)
T ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 000011111100111100011111111100 000000000111 1111 122222333445566677788888888776
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHH-hhhhhhhhhcccCCcc
Q 011716 327 ISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDML-TLGGMLEFFYSEAPHS 405 (479)
Q Consensus 327 ~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~P~~ 405 (479)
.. +..+.++.+++.+.+...... .....+.....++.+.+... ..|..+.++.|.+|++
T Consensus 337 ~~-----------~i~~~~~~~v~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 396 (479)
T PRK10077 337 PL-----------QIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 396 (479)
T ss_pred HH-----------HHHhHHHHHHHHHHHHHHHhc---------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh
Confidence 43 667777777776666543211 11222334444555555543 3477789999999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011716 406 MRSISTALSWCSTSMGYFLSSALVSIT 432 (479)
Q Consensus 406 ~rg~~~g~~~~~~~lg~~~~~~l~~~i 432 (479)
+|++++|+.+....+|+.+++.+.+.+
T Consensus 397 ~r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 397 IRGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999998888764
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-24 Score=218.21 Aligned_cols=373 Identities=11% Similarity=0.082 Sum_probs=228.4
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHH
Q 011716 17 SMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAIL 96 (479)
Q Consensus 17 ~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (479)
++|+++.+.|++.+.+.+++.++++++|+++|| +|||+++..+.++..++.+++..+.. .+...+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~l 134 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG--------------GGIALV 134 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------cCchHH
Confidence 789999999999999999999999999999999 89999999999999988887755421 045578
Q ss_pred HHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHH
Q 011716 97 YTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR-GWNCSFKISAVALGLA 175 (479)
Q Consensus 97 ~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~-gw~~~f~i~~~~~~~~ 175 (479)
++.|+++|++.+...|....++.|++|+++ |+++.++...+.++|.++++.+++++.+.+ |||+.|++.++..++.
T Consensus 135 ~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~ 211 (465)
T TIGR00894 135 VFCRVIQGLAQGSVSPATHKIIVKWAPPKE---RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAW 211 (465)
T ss_pred HHHHHHHHHhcccchhhHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHH
Confidence 889999999999999999999999999888 999999999999999999999999999884 9999999888776655
Q ss_pred HHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhhhhhhh
Q 011716 176 LCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQVEETKT 255 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
.+..+...++.|+++++.++.+ .+.. ++. .+... .+...+ ...++
T Consensus 212 ~~~~~~~~~~~p~~~~~~~~~~--~~~i----~~~-~~~~~---------~~~~~~-------------------~~~~~ 256 (465)
T TIGR00894 212 SLLWFVFPADDPSIHPCISKFE--KKYI----NSS-LQGQK---------GSTRQS-------------------LPIKA 256 (465)
T ss_pred HHHHHHHhcCCcccCCCCCHHH--HHHH----Hhh-ccccc---------CCCCCC-------------------CCHHH
Confidence 5544444433332222211110 0000 000 00000 000000 11122
Q ss_pred hhhhhhHH---HHHHHHHHhhhcccchhh---hhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhc
Q 011716 256 FLGLLPIF---ASTIMMNCCLAQLQTFSV---QQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISA 329 (479)
Q Consensus 256 ~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~ 329 (479)
.++...++ .........+....++.+ .+..+.+ ....+....++.+..++..++.+++.||..+|..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s------~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~- 329 (465)
T TIGR00894 257 IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVS------GKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKT- 329 (465)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 22211111 111111111111111111 1111111 1133444455566677788888999998876532
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHH
Q 011716 330 KYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409 (479)
Q Consensus 330 ~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~ 409 (479)
.+....+++..+..+.......+..... ..+....+..+.+.+.+.+...+.......+..|+ .+|+
T Consensus 330 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~ 396 (465)
T TIGR00894 330 --LSLTAARKIFNGIGGLGPGIFAYALPYL----------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGF 396 (465)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHH
Confidence 0000111122222221111111111110 11223333344444555555555555666677776 8999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 410 STALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 410 ~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
+.|+.++...+|+.++|.+.+.+.+.. ..+.+...|.+.+++.+++.+++..+
T Consensus 397 ~~g~~~~~~~l~~~i~p~l~g~~~~~~-------------~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 397 IKGITGLPGFIGGLIASTLAGNILSQD-------------SKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeCCC-------------CchHHHHHHHHHHHHHHHHHHHeeee
Confidence 999999999999999998887654211 11335667888888888777666544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=210.95 Aligned_cols=328 Identities=11% Similarity=0.062 Sum_probs=213.3
Q ss_pred HhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchh
Q 011716 13 YFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQ 92 (479)
Q Consensus 13 yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (479)
.+.+++|.++.+.++..+.+.++..+++++.|+++|| +||||++..+..+..++..++..++ +
T Consensus 38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~----------------~ 100 (406)
T PRK15402 38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLAQ----------------S 100 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHc----------------c
Confidence 3457899999999999999999999999999999999 8999999999999999988888775 6
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 011716 93 AAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVAL 172 (479)
Q Consensus 93 ~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~ 172 (479)
.+.+++.|+++|++.+...+...+.+.|.+|+++ |.+..+.......+|..+||.+++++.++.+||+.|++.++..
T Consensus 101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~ 177 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD---AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALA 177 (406)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence 6678899999999999988999999999999877 7788888777788899999999999998889999999877776
Q ss_pred HHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhhhh
Q 011716 173 GLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQVEE 252 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
++..+..+...|+.+++.+++.+..+..+.. + +...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------------------------------~~~~ 213 (406)
T PRK15402 178 ALSFFGLWRAMPETAGRVGEKLSLKELGRDY----K----------------------------------------LVLK 213 (406)
T ss_pred HHHHHHHHHhCCCCCccccccccHHHHHHHH----H----------------------------------------HHHc
Confidence 6555444433332211111100000000000 0 0000
Q ss_pred hhhhhhhhhHHHHHHHHHH---hhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhc
Q 011716 253 TKTFLGLLPIFASTIMMNC---CLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISA 329 (479)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~ 329 (479)
.+.... .......... .+....+.+..+..+.+ ....+..........++..++.+++.||..+|..
T Consensus 214 ~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~------~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~- 283 (406)
T PRK15402 214 NRRFVA---GALALGLVSLPLLAWIALSPVILISGEQLS------SYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL- 283 (406)
T ss_pred CcHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-
Confidence 011111 1111111111 11001111111111111 1111222222223344555666777666655532
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHH
Q 011716 330 KYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409 (479)
Q Consensus 330 ~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~ 409 (479)
+..+.++..++...+...... ...+.++++...++.+++++...+..+...... ++++||+
T Consensus 284 ----------~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~ 344 (406)
T PRK15402 284 ----------IRMGLWPMVAGLLLAALATVI--------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGT 344 (406)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHc--------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccH
Confidence 566666666666665543211 012455567778889999988888777666544 4588999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 410 STALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 410 ~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
..+.+++.+.+|+.+|+.+.+.+.
T Consensus 345 ~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 345 VSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998887653
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=217.02 Aligned_cols=379 Identities=13% Similarity=0.110 Sum_probs=255.1
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHH
Q 011716 15 LKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAA 94 (479)
Q Consensus 15 ~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (479)
++++++|+.|.+++.+++..|+.++++++|+++|| +|-|+++..+.++.++++++..++... +.+
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~--------------~~~ 129 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASI--------------GFY 129 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHh--------------cch
Confidence 45799999999999999999999999999999999 899999999999999999999998621 333
Q ss_pred HHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc-cchhhHHHHHHHHHH
Q 011716 95 ILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN-RGWNCSFKISAVALG 173 (479)
Q Consensus 95 ~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~-~gw~~~f~i~~~~~~ 173 (479)
.+++.|+++|++.|...|+...+.+.+.|++| |+++.++.+.+..+|.+++..++|++.+. .||+++|++.+...+
T Consensus 130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E---rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~ 206 (466)
T KOG2532|consen 130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE---RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGL 206 (466)
T ss_pred hhHHHHHHhHHHHhHHHhhhhceeeeECCHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHH
Confidence 67899999999999999999999999999999 99999999999999999999999999998 899999999999988
Q ss_pred HHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhhhhh
Q 011716 174 LALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQVEET 253 (479)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (479)
+..+++++...+.|.++|.-.+.+ .+-+ .+.+ . .++.++ ++.-+.
T Consensus 207 i~~~~w~~~~~d~P~~h~~is~~E--l~~I----~~~k--~-----------~~~~~~----------------~~~vP~ 251 (466)
T KOG2532|consen 207 IWFILWFLFYSDSPSKHPNISEKE--LKYI----EKGK--S-----------EAHVKK----------------KPPVPY 251 (466)
T ss_pred HHHHHHHHHhcCCcccCCCCCHHH--HHHH----Hhcc--c-----------ccccCC----------------CCCCCH
Confidence 877777666655454433221111 0000 0000 0 000000 001234
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhccCCC
Q 011716 254 KTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNI 333 (479)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~ 333 (479)
+.+++..++++.....+.-.........+.+.++...++--..+.+.+.+++.+...+...+.+.+.|++.+| . ..
T Consensus 252 ~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~---ls 327 (466)
T KOG2532|consen 252 KAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-I---LS 327 (466)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c---Cc
Confidence 4455544444332222221111111112222222222111122567778888888888999999999998876 2 22
Q ss_pred CCchhHH--HHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhccc-CCcchHHHH
Q 011716 334 FRPLKRI--GLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSE-APHSMRSIS 410 (479)
Q Consensus 334 ~~~~~~i--~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~rg~~ 410 (479)
.+..+|+ .++....++.++.+++..+. +. +........+.+...........-..+ +| ++-+..
T Consensus 328 ~t~~rkifn~i~~~~~ai~l~~l~~~~~~-----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l 394 (466)
T KOG2532|consen 328 ETTVRKIFNTIAFGGPAVFLLVLAFTSDE-----------HR-LLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFV 394 (466)
T ss_pred hHhHHHHHHhHHHHHHHHHHHeeeecCCC-----------cc-hHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHH
Confidence 2333344 44555555555555554311 11 122222222233333333333333333 54 669999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 011716 411 TALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWA 476 (479)
Q Consensus 411 ~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~ 476 (479)
+|+.++...+.+.++|.+++.+.. + + +...+...|++.+++.+++.++|.++.
T Consensus 395 ~g~~~~~~~~~~~~~P~~vg~~~~-----------~-~-t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 395 MGIINFVGALAGFIAPLLVGIIVT-----------D-N-TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHHHHHheeeEeC-----------C-C-CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 999999999999999999988752 1 2 456788899999999999988887764
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=207.86 Aligned_cols=328 Identities=16% Similarity=0.084 Sum_probs=214.6
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCch
Q 011716 12 AYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHT 91 (479)
Q Consensus 12 ~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (479)
+.+.+++|.++++.+++.+.+.++..+++++.|+++|| +|||+++..+..+..++.++++.++
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~---------------- 91 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSN---------------- 91 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 44577899999999999999999999999999999999 8999999999999999999888875
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHH
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVA 171 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~ 171 (479)
+.+.+.+.|++.|++.+...+..++++.|.+|+++ |++.++..+...++|..++|.+++++.++++||..|++.++.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 168 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE---LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 67788899999999999999999999999999888 999999999999999999999999999989999999987766
Q ss_pred HHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhhh
Q 011716 172 LGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQVE 251 (479)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
.++..+..+...|+.++++.+ ++.++..+. +.+ ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------------------~~~------------~~ 203 (385)
T TIGR00710 169 GILLSALIFFILPETLPYEAR-IQISTYFET--------------------------------FLL------------LL 203 (385)
T ss_pred HHHHHHHHHHhCCCCCCCccc-CCHHHHHHH--------------------------------HHH------------HH
Confidence 555544444433332111100 000000000 000 00
Q ss_pred hhhhhhhhhh-HHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhcc
Q 011716 252 ETKTFLGLLP-IFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAK 330 (479)
Q Consensus 252 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~ 330 (479)
..++...... ............ ...+.+..+..+.+ ....+.......+..++..++.+++.||+++|..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-- 274 (385)
T TIGR00710 204 KSKMFWGYALIYGASFGGFFAFF-SGAPFVYIDIMGVS------PSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL-- 274 (385)
T ss_pred cCchhHHHHHHHHHHHHHHHHHH-HcChHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH--
Confidence 0011111100 001111111111 11111111111111 1122333444455566677777888777766532
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHH
Q 011716 331 YNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSIS 410 (479)
Q Consensus 331 ~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~ 410 (479)
+..+.++..++...+...... ...+........++.+++.+...+.......+..| +.|+++
T Consensus 275 ---------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~ 336 (385)
T TIGR00710 275 ---------LRMGLILFAVSAVLLEITAIL--------GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTA 336 (385)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHH
Confidence 455555555555544433211 01123344455677888888888888888888887 569999
Q ss_pred HHHHHHHHhhhHHHHHHHHhh
Q 011716 411 TALSWCSTSMGYFLSSALVSI 431 (479)
Q Consensus 411 ~g~~~~~~~lg~~~~~~l~~~ 431 (479)
.++.+.....++.+.+.+.+.
T Consensus 337 ~~~~~~~~~~~g~i~~~~~~~ 357 (385)
T TIGR00710 337 SALFGTLRLVLGAIVGYLVSL 357 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999887776655555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=213.41 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=122.5
Q ss_pred hhHHHHHHhhhhcC---CChhhHHHHHHHH---HHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011716 6 NAINFVAYFLKSMH---YPAAESAIMVNNF---MGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSR 79 (479)
Q Consensus 6 ~~~~~~~yl~~~l~---~~~~~~g~i~~~~---~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (479)
+.+.+.+++.++++ .+..+.+.+.+.+ .++..++++++|+++|| +||||++..+..++++++++++++++++.
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (432)
T PRK10406 40 VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGSLVIACLPGYET 118 (432)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 45667778888884 5566544444444 44555999999999999 89999999999999999999988752110
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh---
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE--- 156 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~--- 156 (479)
-...+...+.+.|+++|+|.|+..|...++++|++|+++ |+++.+..+.+.+.|.++++.+...+.
T Consensus 119 --------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~---rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 187 (432)
T PRK10406 119 --------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR---KGFYASFQYVTLIGGQLLALLVVVVLQQTL 187 (432)
T ss_pred --------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 001134468899999999999999999999999999988 888888888888888888887765554
Q ss_pred -----hccchhhHHHHHHHHHHHH
Q 011716 157 -----ENRGWNCSFKISAVALGLA 175 (479)
Q Consensus 157 -----~~~gw~~~f~i~~~~~~~~ 175 (479)
..+|||.+|++.++..++.
T Consensus 188 ~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 188 EDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred CHHHHhccchHHHHHHHHHHHHHH
Confidence 2579999999877655443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=212.63 Aligned_cols=155 Identities=10% Similarity=0.067 Sum_probs=135.9
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
....+++.+++|+++.+.+++.+.+.++..+++++.|+++|| +|||+++..+..+..++.+++++++
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------ 81 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST------------ 81 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh------------
Confidence 445567888999999999999999999999999999999999 8999999999999999999998886
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHH-HHHHHHhhccchhhHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAA-TVMVWIEENRGWNCSFK 166 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~-~~~~~l~~~~gw~~~f~ 166 (479)
+.+.+++.|++.|++.+...|...+++.|++|+++ |+++.++.....++|..++| .+++.+.+..+||+.|+
T Consensus 82 ----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 82 ----SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE---RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred ----hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh---heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 67788999999999999999999999999999888 89999999999999999999 57777777789999998
Q ss_pred HHHHHHHHHHHHHHhh
Q 011716 167 ISAVALGLALCIFTIG 182 (479)
Q Consensus 167 i~~~~~~~~~~~~~~~ 182 (479)
+.++..++..+..+..
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 155 VPGIIAIIVSLICFLL 170 (379)
T ss_pred HHHHHHHHHHHHHhee
Confidence 8776655444443433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=216.42 Aligned_cols=349 Identities=11% Similarity=0.048 Sum_probs=214.9
Q ss_pred HHhhhhcCCC---hhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 12 AYFLKSMHYP---AAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 12 ~yl~~~l~~~---~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
..+.+++|++ +.+.+++.+.+.++..+++++.|+++|| +|||++++.+..+..++.+++++++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~------------- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP------------- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 3456789999 9999999999999999999999999999 8999999999999999999988886
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHH
Q 011716 89 SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKIS 168 (479)
Q Consensus 89 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~ 168 (479)
+++.+++.|++.|++.++..+...+++.|.+|+++ |+...++......+|.++++.++..+.+ ||+.|++.
T Consensus 179 ---~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 ---NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ---RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred ---cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh---hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 77789999999999999999999999999999988 8888888888999999999998876643 99999987
Q ss_pred HHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcch
Q 011716 169 AVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAA 248 (479)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (479)
++..++..+..+ ..|+.++....+.+.++..+......+..+...+++......+ .+..++ +
T Consensus 250 ~i~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------~ 311 (505)
T TIGR00898 250 SLPTFLFFLLSW-FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLE-KDLSSS----------------K 311 (505)
T ss_pred HHHHHHHHHHHH-hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhh-hhhhhc----------------c
Confidence 776555544443 3333221100111111111221111111111111000000000 000000 0
Q ss_pred hhhhhhhhhhh---hhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHh
Q 011716 249 QVEETKTFLGL---LPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFER 325 (479)
Q Consensus 249 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 325 (479)
+....+.+++. ..........+......+...... .+ .+ ..+......+..+..+....+.+++.||++|
T Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~---~~~~~~~~~~~~~~~i~~~~~~~~l~dr~gr 384 (505)
T TIGR00898 312 KQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD---LG-NL---GGNIYLDLFISGLVELPAKLITLLLIDRLGR 384 (505)
T ss_pred CCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcc---cc-cc---CCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 00011111111 011111111111111000000000 01 11 1111111222233444555666778887777
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcc
Q 011716 326 KISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHS 405 (479)
Q Consensus 326 r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 405 (479)
|.. +..+.++.+++.+.+.... ....+..+...++.+++.....+..+.+..|.+|++
T Consensus 385 r~~-----------~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 385 RYT-----------MAASLLLAGVALLLLLFVP-----------VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHH-----------HHHHHHHHHHHHHHHHHcC-----------CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 643 5666666666655555432 112233444445566667777788889999999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHh
Q 011716 406 MRSISTALSWCSTSMGYFLSSALVS 430 (479)
Q Consensus 406 ~rg~~~g~~~~~~~lg~~~~~~l~~ 430 (479)
.|++++|+.+....+|+.++|.+.+
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999998887
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=210.68 Aligned_cols=362 Identities=11% Similarity=0.050 Sum_probs=221.4
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.....+++.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||+++..+..+..++.+++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~----------- 103 (398)
T TIGR00895 36 MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALAT----------- 103 (398)
T ss_pred HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHcc-----------
Confidence 3445566678899999999999999999999999999999999 8999999999999999888887775
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++..++.....++|..+++.+++++.+..||+..|+
T Consensus 104 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~ 175 (398)
T TIGR00895 104 -----NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF---RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY 175 (398)
T ss_pred -----chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh---hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehh
Confidence 66678889999999999999999999999999887 9999999999999999999999999999899999999
Q ss_pred HHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCc
Q 011716 167 ISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTIT 246 (479)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
+.++...+..+..+...|+.++...++++ +...+..... ..+... +.++.. .++..+...+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~~~~~~-------- 239 (398)
T TIGR00895 176 VGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAI-APQMQA--EAQSAL----PEQKATQGTKRSV-------- 239 (398)
T ss_pred hhhhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHHHHHHH-HHhccc--cccccc----cccccccchhhHH--------
Confidence 87645444433333333332211111111 0000000000 000000 000000 0000000000000
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhh
Q 011716 247 AAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERK 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r 326 (479)
.+...+.+.......++.........+.....+..........+ ....+.......+..++..++.+++.||+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 240 FKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFS----LSLAATGGALFNFGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 00000000010111111111111111111111111111111100 11223333334455566677777777776554
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcch
Q 011716 327 ISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSM 406 (479)
Q Consensus 327 ~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 406 (479)
. ...+..+..+......... .+.+......++.+++.+...+..+++..+..|++.
T Consensus 316 ~------------~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (398)
T TIGR00895 316 V------------TALLLLLGAVFAVLVGSTL------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI 371 (398)
T ss_pred H------------HHHHHHHHHHHHHHHHHHh------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 2 3333333333222222211 133445566688889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011716 407 RSISTALSWCSTSMGYFLSSALVSIT 432 (479)
Q Consensus 407 rg~~~g~~~~~~~lg~~~~~~l~~~i 432 (479)
||++.|+.+....+|..++|.+.|.+
T Consensus 372 ~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 372 RATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999999988753
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=212.08 Aligned_cols=332 Identities=13% Similarity=0.038 Sum_probs=209.9
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 011716 10 FVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPS 89 (479)
Q Consensus 10 ~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 89 (479)
+|.+ .++++.++.+.|++.+.+.++..+++++.|+++|| +|||+++..+..+.+++..+++..... .
T Consensus 40 ~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~-----------~ 106 (417)
T PRK10489 40 VPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGLALNAFL-----------P 106 (417)
T ss_pred HHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHHHHHHHc-----------C
Confidence 4444 45788899999999999999999999999999999 899999999888888877665532100 0
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHH
Q 011716 90 HTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISA 169 (479)
Q Consensus 90 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~ 169 (479)
..+.+.+.+.|++.|++.+...++..+++.|..|+++ |+++.++.....++|..+||.+++.+.+..+|++.|++.+
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN---LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH---HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 1156677889999999999888999999999999877 8899999889999999999999999998889999999877
Q ss_pred HHHHHHHHHHHhhcccceecC-CCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcch
Q 011716 170 VALGLALCIFTIGFPIYRYKR-PSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAA 248 (479)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (479)
+..+++.+..+. .|+.++++ +++++.++..+.. +
T Consensus 184 ~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~----~---------------------------------------- 218 (417)
T PRK10489 184 AGTFITLLPLLR-LPALPPPPQPREHPLRSLLAGF----R---------------------------------------- 218 (417)
T ss_pred HHHHHHHHHHHh-CCCCCCCCcccccchHHHHHHH----H----------------------------------------
Confidence 665555443332 22211110 0000000000000 0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhh
Q 011716 249 QVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKIS 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~ 328 (479)
.....+.. +. ..+..... .........+... .....+......+.+.....+..++...+.+++.||..
T Consensus 219 ~~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~p~~---~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~---- 287 (417)
T PRK10489 219 FLLASPVV-GG--IALLGGLL-TMASAVRVLYPAL---ADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSAR---- 287 (417)
T ss_pred HHHcChHH-HH--HHHHHHHH-HHHHhHHHhhHHH---HHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccC----
Confidence 00000111 11 11111111 1111111111111 11101000112233333333444444444444433211
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHH
Q 011716 329 AKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRS 408 (479)
Q Consensus 329 ~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg 408 (479)
+.+.+..+.++..++++.+... .+.+......++.+++.+...+...++..+..|++.||
T Consensus 288 -------~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g 347 (417)
T PRK10489 288 -------PGLLMLLSTLGSFLAVGLFGLM-------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLG 347 (417)
T ss_pred -------cchHHHHHHHHHHHHHHHHHcc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 2223555666666665555432 23444555677788888888888889999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 409 ISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 409 ~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
++.|+++....+|+.+|+.+.|.+.
T Consensus 348 ~~~g~~~~~~~~g~~~g~~l~G~l~ 372 (417)
T PRK10489 348 RINGLWTAQNVTGDAIGAALLGGLG 372 (417)
T ss_pred HHHHHHHHHHhhhHhHHHHHHHHHH
Confidence 9999999999999999999998876
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=211.37 Aligned_cols=356 Identities=12% Similarity=0.077 Sum_probs=216.3
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+.+.+.+++++|+++.+.+++.+.+.++..++.++.|+++|| +|||+++..+..+.+++.+++++++
T Consensus 31 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~----------- 98 (405)
T TIGR00891 31 VALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVLFSAGTLACGFAP----------- 98 (405)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 4455566788999999999999999999999999999999999 8999999999999999999888875
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc--hhhH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG--WNCS 164 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g--w~~~ 164 (479)
+...+++.|++.|++.+...+...+++.|++|+++ |+++.++.....++|.++++.+++.+.+..+ ||+.
T Consensus 99 -----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~ 170 (405)
T TIGR00891 99 -----GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL---RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRAL 170 (405)
T ss_pred -----cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 67788899999999999999999999999999888 9999999999999999999999999887766 9999
Q ss_pred HHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCC
Q 011716 165 FKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDT 244 (479)
Q Consensus 165 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
|.+.++..++.++. ....|+.++.+++++..+...+ ..++.....+.. . .+ ..+.
T Consensus 171 f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~-~~---~~~~------ 225 (405)
T TIGR00891 171 FFISILPIIFALWL-RKNIPEAEDWKEKHAGKALVRT----MVDILYGGEHRI----------A-NI---VMTL------ 225 (405)
T ss_pred HHHHHHHHHHHHHH-HHhCCCChhHHHHhhhhhhhhh----HHHHHhccchhh----------h-hh---hhhh------
Confidence 98766554443332 2222221110000000000000 000000000000 0 00 0000
Q ss_pred Ccchhhhhhhhhhh-hhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhh
Q 011716 245 ITAAQVEETKTFLG-LLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIF 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 323 (479)
........++... ...+.................+.... ..+.+.-....+.......+..++..++.+++.||+
T Consensus 226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 301 (405)
T TIGR00891 226 -AAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYL---KADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL 301 (405)
T ss_pred -hHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHH---HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000000000 01111111111111111111111111 001100011223334444556677778888888887
Q ss_pred HhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCC
Q 011716 324 ERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAP 403 (479)
Q Consensus 324 ~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P 403 (479)
++|.. +..+.++..+........ ..+.+.+....++.++......+....++.+.+|
T Consensus 302 g~~~~-----------~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (405)
T TIGR00891 302 GRRKA-----------YVCSLLAGQLLIIPVFAI------------GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFP 358 (405)
T ss_pred Cchhh-----------hHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCC
Confidence 76632 333433332222211111 1123334444455555555566677788899999
Q ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011716 404 HSMRSISTALSWCSTSMGYFLSSALVSITNL 434 (479)
Q Consensus 404 ~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~ 434 (479)
+++||+++|+.+....+|..+++.+.+.+.+
T Consensus 359 ~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 359 TDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred cchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998763
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=203.26 Aligned_cols=333 Identities=18% Similarity=0.139 Sum_probs=244.9
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
+...+..+.+. +++|.++.+.+++.+.+.++..+++++.|+++|| +||||.+..+..+..++.+++...+
T Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~~~-------- 85 (352)
T cd06174 16 GLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFAS-------- 85 (352)
T ss_pred hhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHhc--------
Confidence 33445555665 5789999999999999999999999999999999 8999999999999999999888875
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+.+.+.+.|++.|++.+...+..++++.|.+|+++ |++.+++.+...++|..++|.+++.+.+..+||.
T Consensus 86 --------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 154 (352)
T cd06174 86 --------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE---RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRW 154 (352)
T ss_pred --------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 67788999999999999999999999999999988 9999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccC
Q 011716 164 SFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDD 243 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
.|++.+...++..+......| .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~-------------~--------------------------------------------- 176 (352)
T cd06174 155 LFLILAILGLLLALLLLFLLR-------------L--------------------------------------------- 176 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------H---------------------------------------------
Confidence 999887776655544333210 0
Q ss_pred CCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhh
Q 011716 244 TITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIF 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 323 (479)
... .......................... .+ ......+.......+...+..++.+++.||.
T Consensus 177 ------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 238 (352)
T cd06174 177 ------------LLL---LALAFFLLSFGYYGLLTYLPLYLQEV-LG--LSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238 (352)
T ss_pred ------------HHH---HHHHHHHHHhHHHHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01111111111111111111110000 00 0011233444555666677778888888887
Q ss_pred HhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCC
Q 011716 324 ERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAP 403 (479)
Q Consensus 324 ~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P 403 (479)
++|.. .+..+.++..++.......+ +.+......++.+++.+...+....+..+..|
T Consensus 239 ~~~~~----------~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 295 (352)
T cd06174 239 GRRRL----------LLLIGLLLAALGLLLLALAP-------------SLALLLVALLLLGFGLGFAFPALLTLASELAP 295 (352)
T ss_pred HhhhH----------HHHHHHHHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcC
Confidence 76640 26677777777776666532 35566777899999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011716 404 HSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNY 472 (479)
Q Consensus 404 ~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~ 472 (479)
+++|++..|+.+....+|+.+++.+.+.+.+ ..++...|.+.+++.+++.+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~----------------~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 296 PEARGTASGLFNTFGSLGGALGPLLAGLLLD----------------TGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------ccCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988652 1223455777777777665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=207.06 Aligned_cols=153 Identities=10% Similarity=0.124 Sum_probs=134.9
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCch
Q 011716 12 AYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHT 91 (479)
Q Consensus 12 ~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (479)
+.+.+++|.+.++.+++.+.+.++..+++++.|+++|| +|||+++..+..+.+++.+++++++
T Consensus 27 ~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~l~~~~~---------------- 89 (382)
T PRK10091 27 TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGNAMFTLSS---------------- 89 (382)
T ss_pred HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHhC----------------
Confidence 44567899999999999999999999999999999999 8999999999999999999998886
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHH
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVA 171 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~ 171 (479)
+.+.+++.|++.|++.+...+...+++.|++|+++ |++.++....+..+|..++|.+++++.+..|||+.|++.++.
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~ 166 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK---VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF 166 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH---hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence 77789999999999999998998999999998877 888899988899999999999999999889999999988776
Q ss_pred HHHHHHHHHhhcc
Q 011716 172 LGLALCIFTIGFP 184 (479)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (479)
.++..+..+...|
T Consensus 167 ~~~~~~~~~~~lp 179 (382)
T PRK10091 167 NIAVLASIYFWVP 179 (382)
T ss_pred HHHHHHHHHHhCC
Confidence 5554444343333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-23 Score=204.60 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=137.4
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
..+.++.+. +++|+++++.+++.+.+.++..+++++.|+++|| +|||+++..+..+.+++..++..++
T Consensus 10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 345555555 5799999999999999999999999999999999 8999999999999999999988875
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
+.+.+.+.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++++.+.++||+.|
T Consensus 78 ------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 148 (377)
T PRK11102 78 ------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE---FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIF 148 (377)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 66788899999999999999999999999999888 999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 011716 166 KISAVALGLALCIFTIGFP 184 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~ 184 (479)
++.+...++..+......|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 149 WVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9877665555444443333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=201.93 Aligned_cols=376 Identities=11% Similarity=0.003 Sum_probs=242.4
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
+...+++.++.++|.+|.|.+.+.+.+.+.++-++.|.++|| .+.|+.+-.++++.++..++.++++
T Consensus 49 ~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs~------------ 115 (448)
T COG2271 49 NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFSP------------ 115 (448)
T ss_pred hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhhh------------
Confidence 344567788999999999999999999999999999999999 8999999999999999999999997
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH--HHHhhccchhhHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVM--VWIEENRGWNCSF 165 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~--~~l~~~~gw~~~f 165 (479)
+...+.+...+.|...|.-.|.+...++.++|.+| |++..+++..+-|+|+.+.|.+. +++..+.+||..|
T Consensus 116 ----s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e---RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f 188 (448)
T COG2271 116 ----SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE---RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAF 188 (448)
T ss_pred ----HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc---cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHH
Confidence 77788899999999999999999999999999988 99999999999999999999999 9999888999999
Q ss_pred HHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCC
Q 011716 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTI 245 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
++++++.++..++.+...++.|++..- .+.+ +.+.+..+.. ++.++++. .
T Consensus 189 ~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie-----------~~~~d~~e~~-----~~~~~~~~-l------------ 238 (448)
T COG2271 189 YFPGIIAIIVALILLFLLRDRPQSEGL-PPIE-----------EYRGDPLEIY-----EEEKENEG-L------------ 238 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccCC-CCHH-----------HhhcCchhhh-----hhhccCCC-c------------
Confidence 999988666555545444443333110 0100 0000000000 00000000 0
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHHhh------hcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchh
Q 011716 246 TAAQVEETKTFLGLLPIFASTIMMNCCL------AQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERS 319 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 319 (479)
..+..-.+.+++...++..+......| ..-.+.+..+.++.+.. ...+.....-...+....+.+++
T Consensus 239 -s~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~------~a~~a~~lfE~agl~G~Ll~Gwl 311 (448)
T COG2271 239 -TAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV------KANWAISLFEVAGLPGTLLAGWL 311 (448)
T ss_pred -cHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH------HHHHHHHHHHHHhhHHHHHHHHH
Confidence 001111223333333333222222221 11223344443343322 23333333445667888899999
Q ss_pred hhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 011716 320 VHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFY 399 (479)
Q Consensus 320 ~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 399 (479)
+||+.+.+ +--.-.+.+++..++.+..-... +.+.+.....+..+|+......-..-..+.
T Consensus 312 SDklfkgr--------R~p~~~i~~~~i~~~~~~~w~~~-----------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~ 372 (448)
T COG2271 312 SDKLFKGR--------RGPMALIFMLLITASLVLYWLAP-----------NGSYLLDAILLFIIGFLIYGPQMLIGLAAA 372 (448)
T ss_pred HHHhcccc--------cchHHHHHHHHHHHHHHHHHcCC-----------CccHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99987542 11112333333333333333211 123444444455555543333333335678
Q ss_pred ccCCcchHHHHHHHHHHHHhh-hHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 400 SEAPHSMRSISTALSWCSTSM-GYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 400 ~~~P~~~rg~~~g~~~~~~~l-g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
|..|++..|++.|+..+...+ |...+....+.+.+.+ +|... |.++.+.++++.+.++.+
T Consensus 373 e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~-----gW~g~-----------Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 373 EFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW-----GWDGG-----------FIVLSIAALLAILLLLPV 433 (448)
T ss_pred ccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC-----CCcch-----------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888 8888777776665332 44443 666666666665555543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=208.83 Aligned_cols=160 Identities=9% Similarity=0.037 Sum_probs=128.1
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
...+++.++ |+++.+.+++.+.+.++..++++++|+++|| +|||++++.+..+.+++.++++++..
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~------------ 115 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPW------------ 115 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhc------------
Confidence 445577777 9999999999999999999999999999999 89999999999999999988877631
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhH-HHHHHHHHHHhhccchhhHHHH
Q 011716 89 SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGG-LVAATVMVWIEENRGWNCSFKI 167 (479)
Q Consensus 89 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~-~ig~~~~~~l~~~~gw~~~f~i 167 (479)
...+...+++.|++.|++.+...|.....+.|++|+++ |+++.++++.+.++|. +.+|+.+..+....+||+.|++
T Consensus 116 ~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 116 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 11156678889999999999999988889999999888 9999999988999986 4556554444444599999998
Q ss_pred HHHHHHHHHHHHHhhccc
Q 011716 168 SAVALGLALCIFTIGFPI 185 (479)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~ 185 (479)
.++..++..++.++..|+
T Consensus 193 ~~~~~~~~~~l~~~~~~~ 210 (452)
T PRK11273 193 PAFAAILVALFAFAMMRD 210 (452)
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 776655544444444343
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=205.00 Aligned_cols=322 Identities=15% Similarity=0.099 Sum_probs=202.0
Q ss_pred HhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchh
Q 011716 13 YFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQ 92 (479)
Q Consensus 13 yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (479)
.+.+++|.++.+.+++.+.+.+.+.++.+++|+++|| +||||+++.+..++++++++++... +
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~~----------------~ 90 (393)
T PRK11195 28 ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFGI----------------H 90 (393)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHHH----------------H
Confidence 3457899999999999999999999999999999999 8999999999999999888876653 2
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 011716 93 AAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVAL 172 (479)
Q Consensus 93 ~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~ 172 (479)
.++.|+++|++.+...|+..+++.|.+|+++ |+++.++.....++|.++||.++|++.+. .|+..+.+...+.
T Consensus 91 ---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~---~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~ 163 (393)
T PRK11195 91 ---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK---LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY 163 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 2678999999999999999999999999888 99999999999999999999999999884 5777777665554
Q ss_pred HHHHHHHHhhcccceecCCC-CCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhhh
Q 011716 173 GLALCIFTIGFPIYRYKRPS-GSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQVE 251 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
+++.+.. ...|+.+.++++ +.+.....+.. ++.. +.+.
T Consensus 164 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~----~~~~------------------------------------~~l~ 202 (393)
T PRK11195 164 LLAALFN-LFIPRLGARRPGQSWNPIALLRDF----FHAC------------------------------------RVLW 202 (393)
T ss_pred HHHHHHH-hcCCCCcccccccCCCHHHHHHHH----HHHH------------------------------------HHHH
Confidence 4443322 223322211110 00000000000 0000 0000
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhccc---chhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhh
Q 011716 252 ETKTFLGLLPIFASTIMMNCCLAQLQ---TFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKIS 328 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~ 328 (479)
..+.. +. .......++....... ..+.++..+.+ ....+.......+..++..++.+++.++..+
T Consensus 203 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s------~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~--- 270 (393)
T PRK11195 203 RDKLG-RF--SLAGTTLFWGAGATLRFLVLAWAPVALGIT------LNQPAYLQAVVAIGIAVGAGAAARLVTLETV--- 270 (393)
T ss_pred hCchh-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------hhHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---
Confidence 00000 10 1111111111111111 11122211111 1123333333344445555555544432221
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcch-H
Q 011716 329 AKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSM-R 407 (479)
Q Consensus 329 ~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~-r 407 (479)
.+.+..+.. .++....+... .+.++.+...++.|++.+...+..++...+..|++. +
T Consensus 271 --------~~~~~~g~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~ 328 (393)
T PRK11195 271 --------LRVLPAGIL-MGLVVLLMALQ-------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGA 328 (393)
T ss_pred --------cchHHHHHH-HHHHHHHHHHH-------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccc
Confidence 222444532 23322222221 234555666778889888888888899888877765 7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 408 SISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 408 g~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
|++.++.++.+.++..++..+.+.+.
T Consensus 329 g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 329 GHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888653
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-23 Score=211.20 Aligned_cols=158 Identities=17% Similarity=0.127 Sum_probs=121.4
Q ss_pred ehhHHHHHHhhhhcCCChhh-HHH-----HHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011716 5 SNAINFVAYFLKSMHYPAAE-SAI-----MVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYS 78 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~-~g~-----i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~ 78 (479)
++..+..+++.++++.+..+ .++ +.++..++..+++++.|+++|| +|||+++..+.+++++++++++++++++
T Consensus 33 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~a~~~~~~ 111 (490)
T PRK10642 33 GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAITIVIMSISTFCIGLIPSYA 111 (490)
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 34556777888888654432 222 2466678899999999999999 8999999999999999999999986321
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh--
Q 011716 79 RLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE-- 156 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~-- 156 (479)
.. .......+.+.|+++|+|.|+..|...++++|++|+++ |++..++...+.++|..+|+.+...+.
T Consensus 112 ~~--------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~---Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~ 180 (490)
T PRK10642 112 TI--------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK---RGFMGSWLDFGSIAGFVLGAGVVVLISTI 180 (490)
T ss_pred HH--------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 00011247889999999999999999999999999988 888888888888888888876655443
Q ss_pred ------hccchhhHHHHHHHHHHH
Q 011716 157 ------ENRGWNCSFKISAVALGL 174 (479)
Q Consensus 157 ------~~~gw~~~f~i~~~~~~~ 174 (479)
.++|||+.|++.++..++
T Consensus 181 ~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 181 VGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred cCHHHhcCccHHHHHHHHHHHHHH
Confidence 257999999987654443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=204.40 Aligned_cols=346 Identities=9% Similarity=0.047 Sum_probs=216.1
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
.+.+.+|.|++ ++|.|..++|++.+.+.++..+++++.|+++|| +|||+++..+..+.+++..+++.++
T Consensus 24 ~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~~~~~~~~~~~--------- 92 (381)
T PRK03633 24 VLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFAAGCAGLGLMV--------- 92 (381)
T ss_pred hHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 34566677765 789999999999999999999999999999999 8999999999999999999888876
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhH
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCS 164 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~ 164 (479)
+.+.+.+.|+++|++.+...|...+.+.|..++++ |++.++.+....++|..+||.+++.+.+...|+..
T Consensus 93 -------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 162 (381)
T PRK03633 93 -------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN---RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLP 162 (381)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 67788899999999999999988888888888777 89999999999999999999999998775433333
Q ss_pred HHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCC
Q 011716 165 FKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDT 244 (479)
Q Consensus 165 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
+........ .+.. ...+ . +++++++++..+ +.+.
T Consensus 163 ~~~~~~~~~-~~~~-~~~~-~-~~~~~~~~~~~~------------------------------------~~~~------ 196 (381)
T PRK03633 163 WVTGLVLAA-ILPL-LFTR-I-LNQQAENHDSTS------------------------------------IWPM------ 196 (381)
T ss_pred HHHHHHHHH-HHHH-HHhc-c-cCCCCCCCCCCC------------------------------------HHHH------
Confidence 322221111 1111 1111 1 110000000000 0000
Q ss_pred CcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhH
Q 011716 245 ITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFE 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 324 (479)
.++ +.... ...........+....++...+..+...+ ....+.......+..++.....+++.||++
T Consensus 197 -----~~~-~~~~~---~~~~~~~~~~~~~~~~~~lp~~~~~~g~s----~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~ 263 (381)
T PRK03633 197 -----LKL-RQARL---GVNGCIISGIVLGSLYGLMPLYLNHQGMS----DASIGFWMALLVSAGILGQWPIGRLADRFG 263 (381)
T ss_pred -----HHh-cchHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHhhhHHHHHHcC
Confidence 000 01100 01111111111111111122111110100 111223333334455566666777777766
Q ss_pred hhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCc
Q 011716 325 RKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPH 404 (479)
Q Consensus 325 ~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 404 (479)
+|.. +..+..+..++...... .........+.+++.....|..+..+.+..|+
T Consensus 264 ~~~~-----------l~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~ 316 (381)
T PRK03633 264 RLLV-----------LRVQVFVVILGSIAMLS----------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEH 316 (381)
T ss_pred cHHH-----------HHHHHHHHHHHHHHHhh----------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCH
Confidence 6532 45555555554433321 01122344556777777789999999999999
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 011716 405 SMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYI 473 (479)
Q Consensus 405 ~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~ 473 (479)
++++...+..++...+|+.++|.+.|.+.+. .+..+.|.+.+.+.++.....+
T Consensus 317 ~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 317 HELVAMNQALLLSYTVGSLLGPSFTAMLMQN----------------YSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hCccHHHHHHHHHHHHHHHHHH
Confidence 8888888888888999999999999886522 2234556776666665544333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=211.64 Aligned_cols=144 Identities=14% Similarity=0.173 Sum_probs=131.9
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
.++.+++++++|+++.+.+++.+.+.++..+++++.|+++|| +|||+++..+..+.+++..++++++
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~------------ 104 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYSVGTGLSGLAS------------ 104 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence 445556778999999999999999999999999999999999 8999999999999999999998886
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKI 167 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i 167 (479)
+.+.+++.|+++|++.+...+....++.|.+|+++ |+++.++...+.++|.++++.+.+.+.+..|||+.|++
T Consensus 105 ----~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 105 ----GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL---KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred ----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH---hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 77789999999999999999999999999999888 89999999999999999999999999888999999987
Q ss_pred HHHH
Q 011716 168 SAVA 171 (479)
Q Consensus 168 ~~~~ 171 (479)
....
T Consensus 178 ~~~~ 181 (426)
T PRK12307 178 GLLP 181 (426)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=207.99 Aligned_cols=367 Identities=13% Similarity=0.122 Sum_probs=205.5
Q ss_pred HHhhhhc--CCChhhHHHHHH-----HHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 12 AYFLKSM--HYPAAESAIMVN-----NFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 12 ~yl~~~l--~~~~~~~g~i~~-----~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
.++.+++ +.++. .+++.+ +..++..+++++.|+++|| +|||+++..+..++++++++++++++++..
T Consensus 47 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~---- 120 (438)
T PRK09952 47 LVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLMLTVWMMGIATALIGLLPSFSTI---- 120 (438)
T ss_pred HHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCCcHHHH----
Confidence 3555555 67766 455432 3345567888889999999 899999999999999999999998632100
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh--------
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE-------- 156 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~-------- 156 (479)
..+....+.+.|+++|++.|+..|....++.|++|+++ |+...+....+..+|..++..+..++.
T Consensus 121 ----~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~ 193 (438)
T PRK09952 121 ----GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQF 193 (438)
T ss_pred ----HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHh
Confidence 00012257789999999999999999999999999988 888888888888888888877766654
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhh
Q 011716 157 ENRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVL 236 (479)
Q Consensus 157 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (479)
+++|||.+|++.++..++... . ++. .||..+..+. +++. +..+ ++ .++.
T Consensus 194 ~~~gWr~~f~~~~~~~l~~~~---l-~~~----~~es~~~~~~--------~~~~-~~~~-------------~~-~~~~ 242 (438)
T PRK09952 194 LSWGWRIPFLFSIVLVLIALW---V-RNG----MEESAEFEQQ--------QHEQ-AAAK-------------KR-IPVI 242 (438)
T ss_pred hccChHHHHHHHHHHHHHHHH---H-HHh----CCCChhHHHH--------Hhhc-cccc-------------cc-CCHH
Confidence 257999999987765433221 1 111 1111000000 0000 0000 00 0000
Q ss_pred hhhcccCCCcchhhhhhhhhhhhhhHH-HHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhc
Q 011716 237 DKALFDDTITAAQVEETKTFLGLLPIF-ASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPL 315 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 315 (479)
+. ..++.+......... .....++....+.+++. .+..+++.. .......+......+..++
T Consensus 243 ~~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~g~s~~------~~~~~~~~~g~~~~i~~~~ 305 (438)
T PRK09952 243 EA----------LLRHPGAFLKIIALRLCELLTMYIVTAFALNYS-TQNLGLPRE------LFLNIGLLVGGLSCLTIPC 305 (438)
T ss_pred HH----------HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHH------HHHHHHHHHHHHHHHHHHH
Confidence 00 001111111101011 11111122212221111 111111110 0011122223334555667
Q ss_pred cchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhh
Q 011716 316 YERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGML 395 (479)
Q Consensus 316 ~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 395 (479)
.+++.||++||.. +..+.++..+....+...... ....+.++...++.+++.+...+..+
T Consensus 306 ~g~l~Dr~grr~~-----------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~ 365 (438)
T PRK09952 306 FAWLADRFGRRRV-----------YITGALIGTLSAFPFFMALEA---------QSIFWIVFFSIMLANIAHDMVVCVQQ 365 (438)
T ss_pred HHHHHHHhCchHH-----------HHHHHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888877643 444444433333222221100 11233334445566777777788888
Q ss_pred hhhcccCCcchHHHHHHHHH-HHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 011716 396 EFFYSEAPHSMRSISTALSW-CSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYI 473 (479)
Q Consensus 396 ~~~~~~~P~~~rg~~~g~~~-~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~ 473 (479)
.+..|.+|++.|+++.|+.+ ....+|+.++|.+.+.+.+.++ +++...+...+++.+++.+..+
T Consensus 366 ~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~--------------~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 366 PMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG--------------GSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 4456888999999887653221 1123345555566665555444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=202.94 Aligned_cols=353 Identities=10% Similarity=0.082 Sum_probs=205.7
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHhhhhHhhhccccchhHHH-HHHHHHHHHHHHHHHHHhhhccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMG-TSFLLTIFGGFISDSFLTRFTTF-ILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~-~~~~~~~~~G~laDr~~Grk~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
...+.++.|+.+++|+++++.|++.+.+.+ +..+.++++|+ +|| +||||.+ ..+..+.+++..+.++++
T Consensus 33 ~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~------- 103 (393)
T PRK15011 33 LQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVLACTLFAWNR------- 103 (393)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHHHHHHHHHhh-------
Confidence 356788999999999999999999876655 55566666666 999 7998875 455555566777777765
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchh
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWN 162 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~ 162 (479)
+.+.+.+.+.+.+...+...|...++..|+.++++| +.+...+......++|.++||.+++++.+++|||
T Consensus 104 ---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~ 173 (393)
T PRK15011 104 ---------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR-EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFT 173 (393)
T ss_pred ---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChH
Confidence 455554444444444456778888888887665441 1234446777889999999999999999989999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhccc
Q 011716 163 CSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFD 242 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
..|++.++..++..+..+...|+.+++++++ + ++.+ .. .
T Consensus 174 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~--~~--------------~------------ 212 (393)
T PRK15011 174 VMYLSAAVAFIVCGVMVWLFLPSMRKELPLA-T------------GTLE--AP--------------R------------ 212 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccCCCCccc-c------------cccc--cc--------------c------------
Confidence 9999887765555444444444322111110 0 0000 00 0
Q ss_pred CCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhccc---chhhhhhhhcccCCCCcccCcccccccccceeehhhhccchh
Q 011716 243 DTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQ---TFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERS 319 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 319 (479)
+..+.... .+......+..+.... +.+.++..+.+ ....+..........++..++.+++
T Consensus 213 --------~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~------~~~~g~~~~~~~~~~i~~~~~~G~l 275 (393)
T PRK15011 213 --------RNRRDTLL---LFVICTLMWGTNSLYIINMPLFIINELHLP------EKLAGVMMGTAAGLEIPTMLIAGYF 275 (393)
T ss_pred --------cccccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111 1111111111211111 11111111111 1112222222233444556778888
Q ss_pred hhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 011716 320 VHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFY 399 (479)
Q Consensus 320 ~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 399 (479)
.||+++|.. +..+.+...+.+......+ +.+..+...++.+++.+...+....+..
T Consensus 276 ~dr~g~~~~-----------~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~ 331 (393)
T PRK15011 276 AKRLGKRFL-----------MRVAAVAGVCFYAGMLMAH-------------SPAILLGLQLLNAIYIGILGGIGMLYFQ 331 (393)
T ss_pred HHHhChHHH-----------HHHHHHHHHHHHHHHHHHh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777632 3344443333333222211 2333344445555566666666667777
Q ss_pred ccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 400 SEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 400 ~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
|..|++ ||+++++++....+|+.+++.+.|.+.+ ..++...|++.+++.+++++.++..
T Consensus 332 ~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 332 DLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAE----------------IWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 888865 9999999998899999999999988652 1234556777677766666555533
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=209.94 Aligned_cols=390 Identities=14% Similarity=0.164 Sum_probs=220.8
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHH
Q 011716 20 YPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTG 99 (479)
Q Consensus 20 ~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (479)
.+..+.+++.+.+.++..++++++|+++|| +|||++++.+..+..++.+++..... ..+.+.+++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 133 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF-------------ALSVEMLIVG 133 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc-------------ccchHHHHHH
Confidence 338999999999999999999999999999 89999999999999999998876631 1245578899
Q ss_pred HHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH---HHHhhccchhhHHHHHHHHHHHHH
Q 011716 100 LYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVM---VWIEENRGWNCSFKISAVALGLAL 176 (479)
Q Consensus 100 ~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~---~~l~~~~gw~~~f~i~~~~~~~~~ 176 (479)
|+++|+|.+...+...++++|.+|+++ |+++.++.+...++|..+++.++ +.+.+..+||+.|++.++..++.+
T Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 210 (481)
T TIGR00879 134 RVLLGIGVGIASALVPMYLSEIAPKAL---RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF 210 (481)
T ss_pred HHHHHhhhhHHHhHHHHHHHccCChhh---hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888 99999999999999999999998 666677899999998665555444
Q ss_pred HHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccC-CCcchhhhhhhh
Q 011716 177 CIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDD-TITAAQVEETKT 255 (479)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 255 (479)
+..++ .++.+....++++.++..+.. ...++.+....+..+. ....+.....+ .....+..+.+.
T Consensus 211 ~~~~~-l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 276 (481)
T TIGR00879 211 LGLFF-LPESPRWLVGKGRVEEARKSL-ARLRGTSGEDKELLDE------------LELIDIKRSIEKRSVQPSWGSLFS 276 (481)
T ss_pred HHHhc-CCCChHHHHHcCChHHHHHHH-HHHhCCCCCcHHHHHH------------HHHHHHHHHHHHhhccccHHHHHh
Confidence 33332 232211000001101100000 0000000000000000 00000000000 000000001111
Q ss_pred hhh--hhhHHHHHHHHHHhh-h--cccchhhhhhhhcccCCCCccc-CcccccccccceeehhhhccchhhhhhHhhhhc
Q 011716 256 FLG--LLPIFASTIMMNCCL-A--QLQTFSVQQGIIMNRTINNFKI-PTQSLTVFPLTIMLASIPLYERSVHIFERKISA 329 (479)
Q Consensus 256 ~~~--~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~ 329 (479)
..+ ....+......+... . .....+... ..+.. +.+. ..........+..++..++.+++.||+++|..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~- 351 (481)
T TIGR00879 277 STRRIRRRLFLGVVLQWFQQFTGINAIMYYSPT--IFENA--GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL- 351 (481)
T ss_pred cCchhHHHHHHHHHHHHHHHHhCCeehHHHHHH--HHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-
Confidence 000 011111111111111 1 111111111 11111 1111 12233333444556667777888887776643
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--ccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchH
Q 011716 330 KYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENH--VTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMR 407 (479)
Q Consensus 330 ~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r 407 (479)
+..++++..+++..+...... .+++ ...+...+....++.+.......+....+..|..|++.|
T Consensus 352 ----------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (481)
T TIGR00879 352 ----------LLIGAAGMAICLFVLGILGAS----FVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR 417 (481)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhhc----ccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHH
Confidence 555666666666655532211 0000 001222222222333333333456677788999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 408 SISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 408 g~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
++++|+.+....+|+.+++.+.+.+... .++...|++.+++++++.+....+
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~----------------~~~~~~f~~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLES----------------IGVGGVFIFFGGLNVLGLIFVYFF 469 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------cCccceehhHHHHHHHHHHHHhee
Confidence 9999999999999999999998876421 122344667777766665554433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-22 Score=200.08 Aligned_cols=151 Identities=9% Similarity=0.063 Sum_probs=124.3
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
+...+.+++++ +++|.++++.+++.+.+.++..++.++.|+++|| +||||++..+..+..+++.++....
T Consensus 30 ~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~-------- 99 (402)
T TIGR00897 30 GLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLWCVGHAAFIVFG-------- 99 (402)
T ss_pred hhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 34556777887 5789999999999999999999999999999999 8999999999999998876653321
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhH-HHHHHHHHHHhhccchh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGG-LVAATVMVWIEENRGWN 162 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~-~ig~~~~~~l~~~~gw~ 162 (479)
....+...+.+.|++.|+|.+...+...+.+.|.+|+++ |+++.+......++|. +++|.+++++.+.+||+
T Consensus 100 ----~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~ 172 (402)
T TIGR00897 100 ----LGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN---LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM 172 (402)
T ss_pred ----ccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence 001156677789999999998888888888999999888 9999999999999996 68999999998888977
Q ss_pred hHHHHHHHH
Q 011716 163 CSFKISAVA 171 (479)
Q Consensus 163 ~~f~i~~~~ 171 (479)
..++.....
T Consensus 173 ~~~~~~~~~ 181 (402)
T TIGR00897 173 NTLWSALAF 181 (402)
T ss_pred HHHHHHHHH
Confidence 666644433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-22 Score=200.34 Aligned_cols=324 Identities=8% Similarity=0.048 Sum_probs=206.7
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
.+.+.+.+++|+|.++.+++.+.+.++..++++++|+++|| +|||+++..+..+..++..++++++
T Consensus 28 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~l~~~~~------------- 93 (394)
T PRK03699 28 MVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALMILAVAGLMFSH------------- 93 (394)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 33445678999999999999999999999999999999999 8999999999999999999888875
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh-ccchhhHHHH
Q 011716 89 SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE-NRGWNCSFKI 167 (479)
Q Consensus 89 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~-~~gw~~~f~i 167 (479)
+...+++.|+++|++.|...+...+++.|.+|+++ |+...+..+...++|..++|.+.+++.. ..|||+.|.+
T Consensus 94 ---~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 ---SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ---RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred ---hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 67788899999999999999999999999998877 8888888778888999999999888754 5799999997
Q ss_pred HHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcc
Q 011716 168 SAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITA 247 (479)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
.++..++..+..+.. +.|+.+ ++++ +++ + ++ .+
T Consensus 168 ~~~~~~~~~~~~~~~--~~p~~~-~~~~-------------~~~-~-~~-------------~~---------------- 200 (394)
T PRK03699 168 IGLVYVAIFILTLFS--EFPALG-KHAP-------------KAD-K-PV-------------AK---------------- 200 (394)
T ss_pred HHHHHHHHHHHHHhc--CCcccc-ccCc-------------ccc-C-cc-------------cc----------------
Confidence 666654443333321 111100 0000 000 0 00 00
Q ss_pred hhhhhhhhhhh-hhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhh
Q 011716 248 AQVEETKTFLG-LLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERK 326 (479)
Q Consensus 248 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r 326 (479)
....+.... ....++..........+.+.+. .+..+++. ...+.......+...+..++.+++.||+.+|
T Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l-~~~~g~s~------~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 271 (394)
T PRK03699 201 --EKWGIGVLFLAIAALLYILAQLTFISWVPEYA-QKKFGMSL------EDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ 271 (394)
T ss_pred --ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCh------HHhhHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 000011110 0111111111111222222222 11111111 1222333333444566667777777776665
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcch
Q 011716 327 ISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSM 406 (479)
Q Consensus 327 ~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 406 (479)
.. +.....+..+.+..+... .+..+.....++.|++.+...+....+..+..|++
T Consensus 272 ~~-----------l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~- 326 (394)
T PRK03699 272 RI-----------LTVLAGLALVLMYLFVNT-------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA- 326 (394)
T ss_pred hH-----------HHHHHHHHHHHHHHHHHc-------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-
Confidence 32 333333333333333221 12333444556677777777777777777777755
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 407 RSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 407 rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
+++..+.......+|..++|.+.+.+.
T Consensus 327 ~~~~~g~~~~~~~~g~~i~p~~~G~l~ 353 (394)
T PRK03699 327 SPKLVNFILTCGTIGTMLTFVVTSPIV 353 (394)
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 567788888888999999999998875
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=198.75 Aligned_cols=346 Identities=10% Similarity=0.005 Sum_probs=215.3
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHH----HHHHHHHHHHHHHHHHHhhhccccc
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTF----ILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~----~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
.+++|.|++ ++|+|.+++|++.+.+.+...+++++.|.++|| +||++.. ..+..++.+ .++..++
T Consensus 24 ~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~------- 92 (382)
T TIGR00902 24 LPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAA--AFSAGAH------- 92 (382)
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHH--HHHHhhh-------
Confidence 466777775 789999999999999999999999999999999 7985433 222222222 1222333
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchh
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWN 162 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~ 162 (479)
+.+.+++.|.+++.+.+...|...++..|. +++ |++.++......++|.+++|.+++++.+++|||
T Consensus 93 ---------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~---~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~ 158 (382)
T TIGR00902 93 ---------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ---FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQ 158 (382)
T ss_pred ---------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH---cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 677888899999999999999998887653 334 788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhccc
Q 011716 163 CSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFD 242 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
..|++......+.++ .....++. +|++++. +++ . . +. .++.+
T Consensus 159 ~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~~------------~~~-~-~--------------~~-~~~~~----- 200 (382)
T TIGR00902 159 NILAILTAGLAFMLI-GFLIKPTI---PPKDAIP------------EDE-S-Q--------------GD-SAFIA----- 200 (382)
T ss_pred HHHHHHHHHHHHHHH-HHHcCCCC---CCCcccc------------ccc-c-c--------------cc-hhHHH-----
Confidence 999876544332222 22222211 1111000 000 0 0 00 00000
Q ss_pred CCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhh
Q 011716 243 DTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHI 322 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 322 (479)
.-..|+... +.+........+....++...+... .+......+....+..+..++..++.+++.||
T Consensus 201 -------~l~~~~~~~---~l~~~~l~~~~~~~~~~~~~~~l~~----~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r 266 (382)
T TIGR00902 201 -------LLKNPMNLR---FLAAVCLIQGAHAAYYGFSAIYWQA----AGISASATGLLWGIGVLAEIIIFAFSNKLFQN 266 (382)
T ss_pred -------HHcChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 000111111 1222222222222233322222111 11001122233333344444444555555554
Q ss_pred hHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccC
Q 011716 323 FERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEA 402 (479)
Q Consensus 323 ~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (479)
++.| +.+..+.++..+.+......+ +.+.++...++.++..+...+....++.+.
T Consensus 267 ~g~~-----------~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~- 321 (382)
T TIGR00902 267 CSAR-----------DLLLISAIACVGRWAIIGAIE-------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ- 321 (382)
T ss_pred CCHH-----------HHHHHHHHHHHHHHHHHHhHh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 4444 337788888888877776532 455566667999999999999999999988
Q ss_pred CcchHHHHHHHHH-HHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011716 403 PHSMRSISTALSW-CSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLN 471 (479)
Q Consensus 403 P~~~rg~~~g~~~-~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~ 471 (479)
|+++|++++++++ +...+|..+++.+.|.+.+.. +. ..|+..+++.++++++
T Consensus 322 ~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~----------------g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 322 PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL----------------GA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cH-HHHHHHHHHHHHHHHH
Confidence 9999999999986 567899999999998875211 12 3467777777766544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=200.90 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=133.9
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhH
Q 011716 14 FLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQA 93 (479)
Q Consensus 14 l~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (479)
+.+++|.+.++.++.++.+.++..++++++|+++|| +|||++++.+..++++++++++.++ +.
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~----------------~~ 104 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTT----------------SM 104 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcC----------------CH
Confidence 567899999999999999999999999999999999 8999999999999999999998886 67
Q ss_pred HHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 011716 94 AILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALG 173 (479)
Q Consensus 94 ~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~ 173 (479)
..++++|+++|++.+...+...+++.|.+|+++ +++.+++.....++|..+||.+++.+.++.|||+.|++.++..+
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~ 181 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTK---GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL 181 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 789999999999998777777888999999877 88889999899999999999999999988899999998887766
Q ss_pred HHHHHHHhhccc
Q 011716 174 LALCIFTIGFPI 185 (479)
Q Consensus 174 ~~~~~~~~~~~~ 185 (479)
++.+..+...|+
T Consensus 182 i~~~~~~~~lp~ 193 (413)
T PRK15403 182 IAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHhCCC
Confidence 665544443443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=207.82 Aligned_cols=351 Identities=12% Similarity=0.014 Sum_probs=212.5
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCc
Q 011716 11 VAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSH 90 (479)
Q Consensus 11 ~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (479)
...+.+++|++.++.+++.+.+.+...++.+++|+++|| +|||++++.+..+..++++++++++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~--------------- 105 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS--------------- 105 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence 344567999999999999999999999999999999999 8999999999999999999988875
Q ss_pred hhHHHHHH-HHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHH
Q 011716 91 TQAAILYT-GLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISA 169 (479)
Q Consensus 91 ~~~~~l~~-~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~ 169 (479)
+.+.+++ .|++.|++.+...+...+++.|+++ ++ |+++.++...+.++|..++|.+++++.+.+|||+.|++.+
T Consensus 106 -~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~---r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~ 180 (455)
T TIGR00892 106 -NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR---RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILG 180 (455)
T ss_pred -hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh---HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 4555554 5788999999877777788889885 55 8999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchh
Q 011716 170 VALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQ 249 (479)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (479)
++.+++.+..++.++..+.++.++.+..+ ..+. ....++... ....++..++.|. +
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~----~~~~~~~~~~~~~----------~ 236 (455)
T TIGR00892 181 GLLLHCCVCGALMRPVGPSQRVSKSKSKE---------GLPP-DGSTKKLSK----KSTAEKINRFLDF----------S 236 (455)
T ss_pred HHHHHHHHHHHHhCCCCcccccccccccc---------cCCC-CCccccccc----cchhhhhhhhcch----------H
Confidence 77655544433333321110000000000 0000 000000000 0000000000000 0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhc
Q 011716 250 VEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISA 329 (479)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~ 329 (479)
.-..+.. .............+....+++..+.. +.++ .....+....+..+..++..++.+++.||...|.
T Consensus 237 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~-- 307 (455)
T TIGR00892 237 LFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAK--DKGV--DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP-- 307 (455)
T ss_pred HhcCchH---HHHHHHHHHHHHHccchHHHHHHHHH--HcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH--
Confidence 0000111 11111111111111111122221111 1111 0112233344444555566666777766421110
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHH
Q 011716 330 KYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409 (479)
Q Consensus 330 ~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~ 409 (479)
++...+..++++..+..+..... .+.+.++...++.|++.+...+...+.+.+.+|++.+++
T Consensus 308 -----~~~~~~~~~~~~~~l~~ll~~~~-------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~ 369 (455)
T TIGR00892 308 -----HVQYLFSFALLFNGLTHLLCALA-------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSS 369 (455)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHh-------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhh
Confidence 01111223333333333332221 234556667788889998889999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 410 STALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 410 ~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
+.|++++...+|+.+++.+.+.+.
T Consensus 370 ~~g~~~~~~~lg~~igp~i~G~l~ 393 (455)
T TIGR00892 370 AVGLVTIVECCAVLIGPPLAGRLV 393 (455)
T ss_pred HHhHHHHHHHHHHHccccceeeee
Confidence 999999999999999999998765
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=197.41 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=129.8
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhH
Q 011716 14 FLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQA 93 (479)
Q Consensus 14 l~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (479)
+++++|.++++.+++.+.+.++..++++++|+++|| +|||+++..+..+..++.+++++++ +.
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~----------------~~ 94 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVE----------------SA 94 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhc----------------CH
Confidence 678999999999999999999999999999999999 8999999999999999988888775 67
Q ss_pred HHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 011716 94 AILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALG 173 (479)
Q Consensus 94 ~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~ 173 (479)
+.+.+.|+++|++.+...+...+++.|.+|+++ +++.++......++|..++|.+++++.+++|||+.|++..+..+
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~ 171 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK---ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITL 171 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 788899999999998888888899999999877 77788887778889999999999999998999999998776655
Q ss_pred HHHHHHH
Q 011716 174 LALCIFT 180 (479)
Q Consensus 174 ~~~~~~~ 180 (479)
+..+..+
T Consensus 172 ~~~~~~~ 178 (401)
T PRK11043 172 LLILPTL 178 (401)
T ss_pred HHHHHHH
Confidence 5544433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=200.28 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=118.0
Q ss_pred hHHHHHHhhhhcCCChhhHHHHH-HHHHH-----HHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 7 AINFVAYFLKSMHYPAAESAIMV-NNFMG-----TSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~-~~~~~-----~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
..+..+.+.++++.++.+.+... +.... ...+++++.|+++|| +||||+++.+..++.+++.+++++++++..
T Consensus 34 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~ 112 (434)
T PRK15075 34 FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGTLLIAFVPGYATI 112 (434)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666788889999888866543 33222 224678999999999 899999999999999999999988521100
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh----
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE---- 156 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~---- 156 (479)
. ......+++.|+++|++.+...|....+++|++|+++ |++..++.....++|..+|+.+++.+.
T Consensus 113 ~--------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~ 181 (434)
T PRK15075 113 G--------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR---KGFYTSWQSASQQVAVVFAALLGYLLNQWLS 181 (434)
T ss_pred H--------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 0001246889999999999999999999999999988 999999988888888888888877763
Q ss_pred ----hccchhhHHHHHHH
Q 011716 157 ----ENRGWNCSFKISAV 170 (479)
Q Consensus 157 ----~~~gw~~~f~i~~~ 170 (479)
+++|||+.|++..+
T Consensus 182 ~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 182 PAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHhccchHHHHHHHHH
Confidence 46899999997543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=202.15 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=124.8
Q ss_pred cCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHH
Q 011716 18 MHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILY 97 (479)
Q Consensus 18 l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (479)
.+.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.++++++.+.. ...+...++
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~ 119 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGSS----------PKSVMATLC 119 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCcc----------cchHHHHHH
Confidence 34667788999999999999999999999999 8999999999999999998888764100 011356899
Q ss_pred HHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh--------------------
Q 011716 98 TGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE-------------------- 157 (479)
Q Consensus 98 ~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~-------------------- 157 (479)
++|+++|++.|...|..+.+++|.+|+++ |+++.+..+....+|..+++.++.++..
T Consensus 120 ~~r~l~G~~~g~~~~~~~~~~~e~~p~~~---Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (502)
T TIGR00887 120 FWRFWLGVGIGGDYPLSAIITSEFATKKW---RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCV 196 (502)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhcChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999998 9999999999999999999988776532
Q ss_pred ---ccchhhHHHHHHHHHHHHHHHHHhhcccc
Q 011716 158 ---NRGWNCSFKISAVALGLALCIFTIGFPIY 186 (479)
Q Consensus 158 ---~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 186 (479)
.++||+.|.+.++..++..+. ....|+.
T Consensus 197 ~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpES 227 (502)
T TIGR00887 197 PAVDYMWRILIGFGAVPALLALYF-RLTIPET 227 (502)
T ss_pred chhcccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 247999998776655544333 3334543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=195.44 Aligned_cols=147 Identities=13% Similarity=0.131 Sum_probs=129.0
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCch
Q 011716 12 AYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHT 91 (479)
Q Consensus 12 ~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (479)
+++.+++|.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+..+..++.+++..++
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~---------------- 94 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVALFAH---------------- 94 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 44567899999999999999999999999999999999 8999999999999999998887775
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHH
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVA 171 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~ 171 (479)
+...+++.|++.|++.+...+....+..|.+++++ ++++.+....+..+|..++|.+++++.+..|||+.|++.++.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~ 171 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ---LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLL 171 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 67788899999999999888888888899888777 888888888899999999999999999888999999987765
Q ss_pred HHHHHHH
Q 011716 172 LGLALCI 178 (479)
Q Consensus 172 ~~~~~~~ 178 (479)
.++..+.
T Consensus 172 ~~~~~~~ 178 (394)
T PRK11652 172 GAGVTFS 178 (394)
T ss_pred HHHHHHH
Confidence 5444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=203.06 Aligned_cols=160 Identities=9% Similarity=0.018 Sum_probs=130.3
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
...+++++ +|.++++.+++.+.+.++..+++++.|+++|| +|||+++..+..+.+++.++++..++.
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~----------- 114 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWA----------- 114 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccc-----------
Confidence 34456665 59999999999999999999999999999999 899999999999999988877664211
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh-hccchhhHHHH
Q 011716 89 SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE-ENRGWNCSFKI 167 (479)
Q Consensus 89 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~-~~~gw~~~f~i 167 (479)
..+...+.+.|++.|++.|...+.....+.|++|+++ |++++++++...++|..+++.+.+... .+.+||..|++
T Consensus 115 -~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~---rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 115 -TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE---RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred -cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc---chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 1155677888999999999999999999999999888 999999999999999999988776544 45689999998
Q ss_pred HHHHHHHHHHHHHhhccc
Q 011716 168 SAVALGLALCIFTIGFPI 185 (479)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~ 185 (479)
.++..++..+..+...|+
T Consensus 191 ~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 191 PAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 777765554444444443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=202.40 Aligned_cols=374 Identities=11% Similarity=-0.010 Sum_probs=213.9
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
++...+.++.|+++++|+++.+.|++.+.+.++..+++++.|+++|| +|||++++.+..+..++..........+
T Consensus 26 ~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~---- 100 (420)
T PRK09528 26 WSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFGPFFIYVFAP---- 100 (420)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34568899999999999999999999999999999999999999999 8999999887766665443222110000
Q ss_pred ccCCCCCchhHH-HHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 83 AMNRRPSHTQAA-ILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 83 ~~~~~~~~~~~~-~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
... ....+..+.++..+...+...+.+.++.++. .++++..++......++|.+++|.+++++.+ .+|
T Consensus 101 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~ 169 (420)
T PRK09528 101 ---------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INP 169 (420)
T ss_pred ---------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCc
Confidence 000 0111222223333333333333333333221 2235667788788889999999999999976 589
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcc
Q 011716 162 NCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALF 241 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (479)
+..|++.++..+++.+..+..+++.+++ ++. ++++.+.. ++ .++.+..
T Consensus 170 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~--------------~~-~~~~~~~-- 217 (420)
T PRK09528 170 QINFWLGSGSALILLVLLFFAKPDAPST-AKV--------------ANALGANA--------------SA-VSLKDAL-- 217 (420)
T ss_pred hHhHHHHHHHHHHHHHHHhcccccccch-hhh--------------ccchhccc--------------cc-ccHHHHH--
Confidence 9999987766665554444433221111 000 00000000 00 0000000
Q ss_pred cCCCcchhhhhhhhhhhhhhHHHHH-HHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhh
Q 011716 242 DDTITAAQVEETKTFLGLLPIFAST-IMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSV 320 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 320 (479)
+.-..+............ ..+.....+.+.++.+.. .+.+.. ....+....++.+...+..++.+++.
T Consensus 218 -------~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~ 286 (420)
T PRK09528 218 -------ALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQG--TRVFGYLNSFQVFLEALIMFFAPFII 286 (420)
T ss_pred -------HHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111111111 111111122222222111 011100 11123334444455566777888888
Q ss_pred hhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 011716 321 HIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYS 400 (479)
Q Consensus 321 ~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 400 (479)
||+++|.. +..+.++..++....... .+.+.++...++.+++.....+...+++.+
T Consensus 287 dr~g~~~~-----------~~~~~~l~~~~~~l~~~~-------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 342 (420)
T PRK09528 287 NRIGAKNA-----------LLLAGTIMAVRIIGSGFA-------------TGPLEVSILKLLHAFEVPFLLVGVFKYITL 342 (420)
T ss_pred HHhCcchh-----------hHHHHHHHHHHHHHHHhc-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776633 566666666666665543 134555666777888888888888899999
Q ss_pred cCCcchHHHHHHH-HHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 401 EAPHSMRSISTAL-SWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 401 ~~P~~~rg~~~g~-~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
..|++.|++..++ +++...+|..+++.+.|.+.+ ..+++..|..++++.++..++....
T Consensus 343 ~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~----------------~~G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 343 NFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD----------------SIGFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH----------------hhCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988766 677888999999999987652 1234556777777776665554444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=206.03 Aligned_cols=350 Identities=31% Similarity=0.453 Sum_probs=229.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhh
Q 011716 54 FTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAF 133 (479)
Q Consensus 54 k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~ 133 (479)
.|+++++.+++.+|.+++.++...+. . ++..+...+++++.+.++|.|+.+|+..++.+||++++++++|.++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~-~------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~ 73 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPS-L------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSF 73 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSS-C------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHH
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcch-h------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhh
Confidence 37888999999999999877753221 1 2233556899999999999999999999999999998867779999
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHhhcccceec-CCCCCchhh-HHHHHHHHHhhcc
Q 011716 134 FNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFTIGFPIYRYK-RPSGSPITR-IFKVIASAIRNRK 211 (479)
Q Consensus 134 ~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ 211 (479)
++++|++.|+|..+++.+.+++.+++||...|.++.+..+++++.++..++.+..+ +|++.+..+ .........++..
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRK 153 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999988887776 555555554 2333333333332
Q ss_pred ccccchhhhcc------CCCCCCCCCcchhhhhhccc-------C-CCcchhhhhhhhhhhhhhHHHHHHHHHHhhhccc
Q 011716 212 ASRSEMTEQIA------SPGATRSNDMFRVLDKALFD-------D-TITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQ 277 (479)
Q Consensus 212 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (479)
...+..+.... ++...... ....+..... + .++.+++++.+.+.+..+.+.....+...+.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~ 231 (372)
T PF00854_consen 154 LAVPKGSSWLDWALFQYSERSIFGI--IVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLN 231 (372)
T ss_dssp CCH-HHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCH
T ss_pred cccccchHHHHHhhhhhhhhhhhhh--hhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhh
Confidence 22211111111 11000000 0011100000 0 1233455666677777777777777777777777
Q ss_pred chhhhhhhhcccCCCC-cccCcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 011716 278 TFSVQQGIIMNRTINN-FKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAV 356 (479)
Q Consensus 278 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~ 356 (479)
.+...+...+++...+ ..++++.+++++.+..++..|+.+++.+|+.++. .+.+...++.+|+++..+++.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~----~~~~~~~k~~~G~~~~~~~~~~~~~ 307 (372)
T PF00854_consen 232 TFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG----IQPSPPQKFGIGMVFAILAMFVAAI 307 (372)
T ss_dssp HHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTH
T ss_pred hHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc----ccchhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777777777777 8899999999999999999999999999988832 4567889999999999999998887
Q ss_pred HHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHH
Q 011716 357 VESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWC 416 (479)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 416 (479)
.+..|....++.+..+.+|.++..++..++|.+..+...+..+|.+|++..+..+|+++.
T Consensus 308 v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~ 367 (372)
T PF00854_consen 308 VEIRRLCYAQPCGKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFA 367 (372)
T ss_dssp HHH---HH----TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHH
T ss_pred HHhhhhhcccccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 776443333333344557777999999999999999999966666666555555555544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=201.92 Aligned_cols=151 Identities=7% Similarity=-0.003 Sum_probs=123.1
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 011716 10 FVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPS 89 (479)
Q Consensus 10 ~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 89 (479)
..+++.+++|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++
T Consensus 58 ~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~-------------- 122 (476)
T PLN00028 58 LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLVS-------------- 122 (476)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 3346678999999999999999999999999999999999 8999999999999999988888875
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh---------ccc
Q 011716 90 HTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE---------NRG 160 (479)
Q Consensus 90 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~---------~~g 160 (479)
+...+++.|+++|++.+...+ ...+++|++|+++ |+++.++.....++|..+++.+.+.+.. ..|
T Consensus 123 --s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~---rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g 196 (476)
T PLN00028 123 --SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI---VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA 196 (476)
T ss_pred --CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh---eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 666788899999999887544 5567899999888 8999999877778888877766655432 258
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 011716 161 WNCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~ 181 (479)
||+.|++.+++.++..+..+.
T Consensus 197 Wr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 197 WRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776554444343
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=203.33 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=132.2
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
...+.+++.+++|+++.+.+++.+.+.++..++.++.|+++|| +|||++++.+..+.+++.+++++++
T Consensus 39 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~----------- 106 (496)
T PRK03893 39 ITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLFSVGTLACGFAP----------- 106 (496)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 3445566778999999999999999999999999999999999 8999999999999999999988876
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
+.+.+++.|++.|++.++..+...+++.|.+|+++ |++..+......++|..++|.+.+++.++++||+.|+
T Consensus 107 -----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~ 178 (496)
T PRK03893 107 -----GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFF 178 (496)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 77788999999999999999999999999999888 8999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 011716 167 ISAVAL 172 (479)
Q Consensus 167 i~~~~~ 172 (479)
+..+..
T Consensus 179 ~~~~~~ 184 (496)
T PRK03893 179 IGILPI 184 (496)
T ss_pred HHHHHH
Confidence 754443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-21 Score=191.59 Aligned_cols=326 Identities=9% Similarity=-0.016 Sum_probs=196.2
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchh----HHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRF----TTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk----~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
+.+.+|.|++ ++|.|..++|++.+.+.+...++++++|+++|| +||| +.+..+..+. ........+
T Consensus 23 ~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~~~~~~~~------ 92 (382)
T PRK11128 23 FLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AVAFWFGAH------ 92 (382)
T ss_pred HhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HHHHHHhcc------
Confidence 4566778885 689999999999999999999999999999999 7984 3332222111 111122222
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
+.+.+++.|++.|++.+...|...++..|+ .++ |++.++......++|.++||.+++++.+++||
T Consensus 93 ----------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~---~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~ 157 (382)
T PRK11128 93 ----------SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ---IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGE 157 (382)
T ss_pred ----------cHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh---ccCCcchHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 677788899999999999999988888876 233 67777888888899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcc
Q 011716 162 NCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALF 241 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (479)
|..|++.++..++..+.. ...|+ ++|++++. ++++ + .. .++.+
T Consensus 158 ~~~f~~~~~~~~~~~~~~-~~~~~---~~~~~~~~-----------~~~~-~----------------~~-~~~~~---- 200 (382)
T PRK11128 158 QAILWILTAGVASMLLGQ-LLRPT---IMPQGESR-----------QQES-A----------------GW-PAWKA---- 200 (382)
T ss_pred hHHHHHHHHHHHHHHHHH-HccCC---CCCccccc-----------cccc-c----------------cc-chHHH----
Confidence 999987776544433322 22221 11111000 0000 0 00 00000
Q ss_pred cCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhh
Q 011716 242 DDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVH 321 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 321 (479)
....+.... ...........+....++...+.. +.+. .....+.....+.+..++...+.+++.|
T Consensus 201 --------i~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~--~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~ 265 (382)
T PRK11128 201 --------LLKEPTVWR---FLLCVSLLQGSHAAYYGFSAIYWQ--AAGY--SASTIGYLWSLGVVAEVLIFAFSNRLFR 265 (382)
T ss_pred --------HHcChhHHH---HHHHHHHHHHHhHhHHHHHHHHHH--HCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111111 111111111111111121111111 1110 0111223333333344444455555555
Q ss_pred hhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 011716 322 IFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSE 401 (479)
Q Consensus 322 ~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (479)
|+++|+ .+..+.++.+++++.....+ +.+.+++..++.+++++...+....+..+.
T Consensus 266 r~~~~~-----------~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 321 (382)
T PRK11128 266 RWSARD-----------LLLLSAICGVVRWGLMGSTT-------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR 321 (382)
T ss_pred HCCHHH-----------HHHHHHHHHHHHHHHHHhhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 554443 26667777776666555432 445566678889999999999999988887
Q ss_pred CCcchHHHHHHHHH-HHHhhhHHHHHHHHhhhh
Q 011716 402 APHSMRSISTALSW-CSTSMGYFLSSALVSITN 433 (479)
Q Consensus 402 ~P~~~rg~~~g~~~-~~~~lg~~~~~~l~~~i~ 433 (479)
|++++++.+++.+ ....+|..+++.+.|.+.
T Consensus 322 -~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 322 -PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred -CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666799999886 556778889999998875
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=191.23 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=133.5
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCc
Q 011716 11 VAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSH 90 (479)
Q Consensus 11 ~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (479)
.+.+.+++|.+..+.++..+.+.++..+++++.|+++|| +|||+.+..+..+..++..++..++
T Consensus 26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~~--------------- 89 (392)
T PRK10473 26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLAE--------------- 89 (392)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHhC---------------
Confidence 344567899999999999999999999999999999999 8999999999999999998888775
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHH
Q 011716 91 TQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAV 170 (479)
Q Consensus 91 ~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~ 170 (479)
+...+++.|+++|++.+...+...+++.|.+|+++ |++..+..+...++|..++|.+++.+.+..|||+.|++.++
T Consensus 90 -~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~ 165 (392)
T PRK10473 90 -TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR---RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAA 165 (392)
T ss_pred -cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHH
Confidence 66678889999999999999999999999999888 99999999999999999999999998888899999998776
Q ss_pred HHHHHHHHHHhhcc
Q 011716 171 ALGLALCIFTIGFP 184 (479)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (479)
...+..+......|
T Consensus 166 ~~~i~~~~~~~~~~ 179 (392)
T PRK10473 166 MGILVLLLSLFILK 179 (392)
T ss_pred HHHHHHHHHHHHcC
Confidence 65554444333333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=187.08 Aligned_cols=370 Identities=14% Similarity=0.028 Sum_probs=252.6
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
..+.+.+.+++.+++|+|+.|.+++++.-.+...+.+++-|.+.|| ||.|++...+.++..+-.+..+++.+.+
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~~IP~~~~~~a~~~~----- 103 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLLLIPCLGLAFAVTYP----- 103 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHHccCC-----
Confidence 4566778889999999999999999999999999999999999999 8999999999999999999999986333
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc---
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG--- 160 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g--- 160 (479)
+++.+++.+++.|++ |+......+++++++|+|+ .+.+.+++. ..|+|..+...++..+....|
T Consensus 104 --------~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~---qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~ 170 (417)
T COG2223 104 --------STWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK---QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLA 170 (417)
T ss_pred --------chHHHHHHHHHHhcc-cceehcccccccccCChhh---hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHH
Confidence 557888899999986 6778899999999999999 999999999 999999999999999998888
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhc
Q 011716 161 WNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKAL 240 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (479)
|+.+..+..+.+++..+..++..++.++.+++.++... + .
T Consensus 171 w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-----------------~------------------~----- 210 (417)
T COG2223 171 WRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-----------------A------------------Q----- 210 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-----------------h------------------H-----
Confidence 99999988888888777778776654443222211100 0 0
Q ss_pred ccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhh
Q 011716 241 FDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSV 320 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 320 (479)
.+.+...++...+..+=..++.-++.+....+.+ ...+++-.....+......++...+.-|+.+++.
T Consensus 211 ------~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~------~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~Ls 278 (417)
T COG2223 211 ------LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMY------LVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLS 278 (417)
T ss_pred ------HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCCChhhHHHHHHHHHHHHHHHHhccchhh
Confidence 0000111122221111122222222222222211 1222211133444555555666778889999999
Q ss_pred hhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 011716 321 HIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYS 400 (479)
Q Consensus 321 ~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 400 (479)
||++.++. ...-...+++........... +++..+....+..++..++..+..+...+.++..
T Consensus 279 DR~Gg~rv-----------~~~~f~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~ 341 (417)
T COG2223 279 DRIGGRRV-----------TLAVFVGMALAAALLSLFLTG------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPV 341 (417)
T ss_pred hhccchhH-----------HHHHHHHHHHHHHHHHccccc------cccCcchHHHHHHHHHHHHHhccCcchheeechH
Confidence 99988754 455555555555555443211 0112344555555566666666666666666666
Q ss_pred cCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 401 EAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 401 ~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
..|+ +-|...|+......+|+..-|...+...+.+ +.....|+.+..+.+++.+.....+.
T Consensus 342 if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t---------------g~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 342 IFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT---------------GSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 5778888888888888888777777754333 22455577888888777776665543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=193.46 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=110.2
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHH---HHhhhccccccc
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLT---IQAQYSRLQPAM 84 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~ 84 (479)
..+.+.+++++|.++.+.|+..+.+.++..+++++.|++.|| +||||++..+..+++++++++. .++
T Consensus 46 ~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~~~l~~~~~~a~--------- 115 (438)
T PRK10133 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIM--------- 115 (438)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 334445688999999999999999999999999999999999 8999999999999999998764 333
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE 156 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~ 156 (479)
++..+.++|+++|+|.|...+..++++.|..|+++ +...++.......+|..+|+.+++.+.
T Consensus 116 -------~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~---~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 -------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999765555 444577777788899999998877654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=196.81 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=140.0
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhH
Q 011716 14 FLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQA 93 (479)
Q Consensus 14 l~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (479)
+++.+|+++++.|++...+.+...+++|+.|+++|| ++||+++.+|..++.++.+.++++. ..
T Consensus 59 v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW~~Av~~~~fs~----------------~F 121 (493)
T KOG1330|consen 59 VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIWTLAVFASGFSN----------------HF 121 (493)
T ss_pred HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHHHHHHHHHHHHH----------------HH
Confidence 356799999999999999999999999999999999 8999999999999999999999996 77
Q ss_pred HHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-hhhHHHHHHHHH
Q 011716 94 AILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-WNCSFKISAVAL 172 (479)
Q Consensus 94 ~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w~~~f~i~~~~~ 172 (479)
+.+.+.|.+.|+|++...|..+++++|.+|+.+ |++.++++|++.++|..+|..+++.+....+ |||.|+..+++.
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~---Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~ 198 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK---RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLG 198 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchh---hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHH
Confidence 789999999999999999999999999999998 9999999999999999999999999988766 999999999887
Q ss_pred HHHHHHHHhhccc
Q 011716 173 GLALCIFTIGFPI 185 (479)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (479)
++..++..+..++
T Consensus 199 vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 199 VIVGLLVFLFVRE 211 (493)
T ss_pred HHHHHHHHhhccC
Confidence 7776666665544
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-21 Score=189.76 Aligned_cols=327 Identities=11% Similarity=0.070 Sum_probs=206.6
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
.....+.+.+.+++|+++++.+++.+.+.++..++.++.|+++|| +||||++..+..+..++.+++ ..+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~--------- 85 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAP--------- 85 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hhc---------
Confidence 334445556678999999999999999999999999999999999 899999999998888887766 443
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc--chh
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR--GWN 162 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~--gw~ 162 (479)
+...+++.|++.|+|.+...+..+.++.|.+| ++ |+++.+......++|..+++.+++.+.++. +||
T Consensus 86 -------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~ 154 (355)
T TIGR00896 86 -------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR---VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQ 154 (355)
T ss_pred -------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 56677889999999999988888888888876 45 889999999999999999999999887764 399
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhccc
Q 011716 163 CSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFD 242 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
..|.+.++..++..... .++.+++++++++ .+.... . +
T Consensus 155 ~~f~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------~~~~~~---------------~-----~----- 192 (355)
T TIGR00896 155 QALAWWALPALLALLAW---IPQVRRRVAANQT--------------TTRLTP---------------V-----R----- 192 (355)
T ss_pred HHHHHHHHHHHHHHHHH---hhhhccccCCCCC--------------CCCCCC---------------c-----h-----
Confidence 88876554433332221 1211111100000 000000 0 0
Q ss_pred CCCcchhhhhhhhhhhhhhH-HHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhh
Q 011716 243 DTITAAQVEETKTFLGLLPI-FASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVH 321 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 321 (479)
..++ +........ ......+.....+.+.++ ++ .+.+ ....+.......+..++..++.+++.|
T Consensus 193 ------~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~-~g~~------~~~~g~~~~~~~~~~i~~~~~~g~l~d 257 (355)
T TIGR00896 193 ------IWRS-PLAWQVTVFFGLQSGLYYSLIGWLPAIL-IS-HGAS------AATAGSLLALMQLAQAASALLIPALAR 257 (355)
T ss_pred ------hhcC-HhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCC------HHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 0000 111111101 111111122211121111 11 1111 112333444445566677777777777
Q ss_pred hhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 011716 322 IFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSE 401 (479)
Q Consensus 322 ~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (479)
|+.+|. +.+..+.++..++...+..... +..+. ..++.+++.+...|.....+.+.
T Consensus 258 r~~~~~----------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~--~~~l~g~~~g~~~~~~~~~~~~~ 313 (355)
T TIGR00896 258 RVKDQR----------GIVAVLAVLQLVGLCGLLFAPM------------HGLWA--WALVLGLGQGGAFPLALTLIGLR 313 (355)
T ss_pred hhccch----------HHHHHHHHHHHHHHHHHHHhhh------------hHHHH--HHHHHHHhhhhHhHHHHHHHHHh
Confidence 663321 1145566666666555544321 11111 34677889988888877776655
Q ss_pred CC-cchHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011716 402 AP-HSMRSISTALSWCSTSMGYFLSSALVSITNL 434 (479)
Q Consensus 402 ~P-~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~ 434 (479)
.+ ++++++..++.+....+++.++|.+.|.+.+
T Consensus 314 ~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 314 SRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 6778999999888888999999999988764
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=190.86 Aligned_cols=346 Identities=13% Similarity=0.084 Sum_probs=214.8
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccc---cchhH-HHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSF---LTRFT-TFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~---~Grk~-~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
.+.++++.|+++++|+++.++|++.++..+...+..|+.|+++||. +|||| .++.+....+++.+++...++.+
T Consensus 17 ~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~-- 94 (437)
T TIGR00792 17 IVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFS-- 94 (437)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCC--
Confidence 3456788899999999999999999999999999999999999972 47744 66677778888877776653111
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCC-cchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh---
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDH-SNRRLISAFFNWFFFSLCAGGLVAATVMVWIE--- 156 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~--- 156 (479)
.......+.+.+++.+++.+...+...++..|..++ +| |++..++.....++|..+++.+.+.+.
T Consensus 95 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~---R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~ 163 (437)
T TIGR00792 95 --------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE---RESLSTFRRFGATLGGLLVAVIVLPLVSYF 163 (437)
T ss_pred --------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111355667778888888888888888999998754 44 888888888888888887777665554
Q ss_pred ----hccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCc
Q 011716 157 ----ENRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDM 232 (479)
Q Consensus 157 ----~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479)
+..+||..+.+.+++.++..+..+...|+.+++.+++++ + +
T Consensus 164 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~--------------~--~------------------- 208 (437)
T TIGR00792 164 GGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE--------------K--K------------------- 208 (437)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc--------------c--C-------------------
Confidence 246899998887776665554444443332111010000 0 0
Q ss_pred chhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehh
Q 011716 233 FRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLAS 312 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 312 (479)
.+..+.. ++....|.... ........+..+........... +..++. ....+....+..+..++.
T Consensus 209 ~~~~~~~--------~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~i~~ii~ 273 (437)
T TIGR00792 209 LSLKQIF--------KALFKNDQLLI---LCLAYLFYNLAFNIKNGVQVYYF---TYVLGD-PELFSYMGSIAIVAGLIG 273 (437)
T ss_pred CCHHHHH--------HHHhCCHHHHH---HHHHHHHHHHHHHHHcchhheeE---eeecCC-hHHHHHHHHHHHHHHHHH
Confidence 0000000 00000111111 11111111111111111111110 000000 111222333344556667
Q ss_pred hhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhh
Q 011716 313 IPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLG 392 (479)
Q Consensus 313 ~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 392 (479)
.++.+++.+|+++|.. +..+.++..++.+...... .+.+..+...++.+++.+...+
T Consensus 274 ~~~~~~l~~r~g~~~~-----------~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~ 330 (437)
T TIGR00792 274 VLLFPRLVKKFGRKIL-----------FAGGILLMVLGYLIFFFAG------------SNLPLILVLIILAGFGQNFVTG 330 (437)
T ss_pred HHHHHHHHHHhCcHHH-----------HHHHHHHHHHHHHHHHHcc------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 7777888777766543 5666666666665554421 1234455566778888888888
Q ss_pred hhhhhhcccCC-------cchHHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 011716 393 GMLEFFYSEAP-------HSMRSISTALSWCSTSMGYFLSSALVSITNLVS 436 (479)
Q Consensus 393 ~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~ 436 (479)
..+++..+.+| ++.+|++.|+.++...+|..+++.+.+.+.+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 331 LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888765 567899999999999999999999999876543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-21 Score=192.65 Aligned_cols=363 Identities=10% Similarity=-0.035 Sum_probs=221.4
Q ss_pred hhHHHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 6 NAINFVAYFLK-SMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 6 ~~~~~~~yl~~-~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
+.+.+...+.+ ++|+|++|.+++.+.+.++..+++++.|++.|| +|.|+++..+.++..+.+++++++.+
T Consensus 52 ~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i~~~~~~~a~~-------- 122 (462)
T PRK15034 52 LFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILIIPCVWLGIAVQ-------- 122 (462)
T ss_pred HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 34555556554 799999999999999999999999999999999 89999999999999999998887610
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh-----h--
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE-----E-- 157 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~-----~-- 157 (479)
+...++..+++.|++.|++ |+..+.....+++++|+++ |+++.++.....|+|..+++.+...+. +
T Consensus 123 ---~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~---rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~ 195 (462)
T PRK15034 123 ---NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK---QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFL 195 (462)
T ss_pred ---ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0111778999999999998 7788999999999999888 999999987777888876666554432 2
Q ss_pred -----------ccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCC
Q 011716 158 -----------NRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGA 226 (479)
Q Consensus 158 -----------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (479)
..+||.++++..+..++..+..++..++.++ ++...++... .+|+
T Consensus 196 G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~~~~~~----vlk~----------------- 251 (462)
T PRK15034 196 GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASIADQLP----VLQR----------------- 251 (462)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCHHHHHH----HhCC-----------------
Confidence 2347777766666665555555554333111 1111111000 0000
Q ss_pred CCCCCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCccccccccc
Q 011716 227 TRSNDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPL 306 (479)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 306 (479)
++......+..+....+..+....+.+... ..+ .........+..
T Consensus 252 ---------------------------~~~Wllslly~~tFG~fvg~s~~lp~~~~~--~~~------~~~~l~~~~l~~ 296 (462)
T PRK15034 252 ---------------------------LHLWLLSLLYLATFGSFIGFSAGFAMLAKT--QFP------DVNILRLAFFGP 296 (462)
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HcC------hHHHHHHHHHHH
Confidence 011111111111221112111111111111 111 001111122224
Q ss_pred ceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCccchHHHHHHHHHHHHH
Q 011716 307 TIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVA-AVVESTRRAAAENHVTLSVFWLVWQYLLLGV 385 (479)
Q Consensus 307 ~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (479)
+...+..|+.+++.||.++++. +..+.+.+.+..... ..... +...+.+.....++.+.+
T Consensus 297 l~~~l~rplgG~LADRiG~~~v-----------l~~~~i~~~i~~~~~~l~lp~--------~~~~~~~~~~~~~~~l~~ 357 (462)
T PRK15034 297 FIGAIARSVGGAISDKFGGVRV-----------TLINFIFMAIFSALLFLTLPG--------TGSGNFIAFYAVFMGLFL 357 (462)
T ss_pred HHHHHHHHhhHHHHHhcCchHH-----------HHHHHHHHHHHHHHHHHHhcc--------ccccHHHHHHHHHHHHHH
Confidence 5566777899999999887743 444444444333221 11110 001234455555566666
Q ss_pred HHHHhhhhhhhhhcccCCc---------------------chHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCccc
Q 011716 386 SDMLTLGGMLEFFYSEAPH---------------------SMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWL 444 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~P~---------------------~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~ 444 (479)
+.++.+...+-++.+.+|+ ++-|.++|+......+|+++-|.+.+...+.++
T Consensus 358 ~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g------- 430 (462)
T PRK15034 358 TAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG------- 430 (462)
T ss_pred HhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-------
Confidence 6667777777666666664 157788888888888988888888776553221
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 445 GGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 445 ~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
.+...|+.+.+..++++++.+..+.
T Consensus 431 --------~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 431 --------SPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344467777777777666665543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=191.74 Aligned_cols=370 Identities=13% Similarity=0.056 Sum_probs=217.5
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccch-hHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTR-FTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Gr-k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
..++++.|+++++|++..|.|++.+.+.++..+++++.|+++|| +|| |+++..+..+.++++.+..+.+
T Consensus 21 ~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~~~--------- 90 (418)
T TIGR00889 21 WLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQVT--------- 90 (418)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 34888999999999999999999999999999999999999999 764 7788888888877777777664
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccC--------CCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQL--------DHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE 156 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~ 156 (479)
+.+.+.+.|++.+++.+...|...+...+.. ...+ |.+.++ .+|.++||.+++.+.
T Consensus 91 -------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~---~~r~~G------~lG~~ig~~l~g~l~ 154 (418)
T TIGR00889 91 -------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP---PIRVMG------TIGFIAAMWAVSLLD 154 (418)
T ss_pred -------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC---Ceeeeh------hHHHHHHHHHHHHhc
Confidence 5667778888888888877777666543222 1122 344444 478999999998884
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhh
Q 011716 157 ENRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVL 236 (479)
Q Consensus 157 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (479)
....|+ +|++.++..++..+. ....|+.++++ +++..+. ++.. + .++.
T Consensus 155 ~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~--~~~~~~~--------~~~~---~-----------------~~~~ 202 (418)
T TIGR00889 155 IELSNI-QLYITAGSSALLGVF-ALTLPDIPVAK--STAKMSI--------KVML---G-----------------LDAF 202 (418)
T ss_pred ccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCc--cccccCH--------HHHh---h-----------------hhHH
Confidence 433454 455555544443332 22333321111 0000000 0000 0 0000
Q ss_pred hhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhc--ccCCC-Ccc-cCcccccccccceeehh
Q 011716 237 DKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIM--NRTIN-NFK-IPTQSLTVFPLTIMLAS 312 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~-~~~-~~~~~~~~~~~~~~~~~ 312 (479)
+ ....++. ..+..............+.++..+.... +.... +.. ...+....+..+..++.
T Consensus 203 ~------------~~k~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~ 267 (418)
T TIGR00889 203 I------------LFKNKRM---AIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFF 267 (418)
T ss_pred H------------HhcCCCe---eeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHH
Confidence 0 0000111 1111111111111111111111111010 00000 000 11133333344445555
Q ss_pred hhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhh
Q 011716 313 IPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLG 392 (479)
Q Consensus 313 ~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 392 (479)
..+.+++.||+++|.. +..+.++..+++..+..... +....+.+++..++.+++++...+
T Consensus 268 ~~~~g~l~dr~g~r~~-----------l~~~~~~~~v~~~l~~~~~~---------~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 268 ILTIPFFLKRFGIKKV-----------MLLSLVAWALRFGFFAYGDP---------EYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred HHHHHHHHHHhCcHHH-----------HHHHHHHHHHHHHHHHHcCc---------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777766643 67777777766655554210 011234455667889999999899
Q ss_pred hhhhhhcccCCcchHHHHHHHHH-HHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011716 393 GMLEFFYSEAPHSMRSISTALSW-CSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLN 471 (479)
Q Consensus 393 ~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~ 471 (479)
....++.+.+|++.|++++|+.+ ....+|..+||.+.|.+.+..++ .+..+++..|..++++.+++.+.
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~----------~~~~~~~~~f~~~~~~~~i~~~l 397 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA----------YGTFDWQTMWLFFAGYIAILAVL 397 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc----------ccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 67889999999999987632211 01123566677777777777666
Q ss_pred Hhhhhcc
Q 011716 472 YIYWAKR 478 (479)
Q Consensus 472 ~~~~~~~ 478 (479)
+.++.++
T Consensus 398 ~~~~~~~ 404 (418)
T TIGR00889 398 FMIFFKY 404 (418)
T ss_pred HHHHhCC
Confidence 6655543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-21 Score=191.01 Aligned_cols=366 Identities=11% Similarity=0.022 Sum_probs=213.1
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
....+.++.|+++++|.++.+.|++.+.+.++..+++++.|+++|| +||||.++.+.....++..........+.
T Consensus 19 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~---- 93 (396)
T TIGR00882 19 SAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIYVFGPL---- 93 (396)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhhhH----
Confidence 3456788899999999999999999999999999999999999999 89999999877666654433221100000
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
..........+.+++.+++.+...|....+..|..+ + ++..++......++|.++||.+++.+.+ ++||.
T Consensus 94 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~---~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~ 163 (396)
T TIGR00882 94 ----LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N---SNFEYGKARMFGCVGWALCASIAGILFS-IDPQI 163 (396)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h---cccccchhhhhcccHHHHHHHHHhhhhc-cCchH
Confidence 000022345567888888888888888877766422 2 3345667777889999999999998865 69999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccC
Q 011716 164 SFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDD 243 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
.|++.+.+.++..+..+...++.+ ++++. +++. +..+ +.++..+..+
T Consensus 164 ~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~~~-~~~~-----------~~~~~~~~~~------ 210 (396)
T TIGR00882 164 VFWLGSGFALILMLLLMFAKPKAP----SSATV-----------ANAL-GANA-----------SAFSLKLALE------ 210 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCc----hhhhh-----------hccc-cccc-----------CCCCHHHHHH------
Confidence 999887765555443333222211 10000 0000 0000 0000000000
Q ss_pred CCcchhhhhhhhhhhhhhHHHHHHHHHHhhh----cccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchh
Q 011716 244 TITAAQVEETKTFLGLLPIFASTIMMNCCLA----QLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERS 319 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 319 (479)
.-..|...... .........+. +.+.+.... ......+ ....+....+..+...+.....+++
T Consensus 211 ------~l~~~~~~~~~---l~~~~~~~~~~~~~~~~~~y~~~~---~~~~~~~-~~~~g~~~~~~~i~~~~~~~~~g~l 277 (396)
T TIGR00882 211 ------LFRQRKFWMFV---LYVVGVACVYDVFDQQFANFFTSF---FATPQQG-TRVFGYVTTMGELLNALIMFCAPLI 277 (396)
T ss_pred ------HHcCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh---ccccccc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111 11111111111 111111111 1100000 0011223333334445555666677
Q ss_pred hhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 011716 320 VHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFY 399 (479)
Q Consensus 320 ~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 399 (479)
.||.++|+. +..+.++..+........ .+.+++++..++.+++.........++..
T Consensus 278 ~~r~g~~~~-----------l~~~~~l~~l~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 278 INRIGAKNA-----------LLIAGTIMSVRIIGSSFA-------------TTALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHhccchh-----------HHHHHHHHHHHHHHHHhc-------------CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665532 566666666655554432 24455566677888887777667777888
Q ss_pred ccCCcchHHHHHHH-HHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 011716 400 SEAPHSMRSISTAL-SWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFL 470 (479)
Q Consensus 400 ~~~P~~~rg~~~g~-~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~ 470 (479)
+..|++.+++..++ ++....+|+.+++.+.|.+.+. .++...|.+.+++.++..+
T Consensus 334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~----------------~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS----------------IGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh----------------cccHHHHHHHHHHHHHHHH
Confidence 88999999887776 6788999999999999887521 2345556666666655544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=193.27 Aligned_cols=143 Identities=17% Similarity=0.044 Sum_probs=120.3
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
...+.+|.++++++|+|+.+.+++.+.+.++..+++++.|+++|| +|||+.+..+..+..++.+++++++.
T Consensus 19 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~~~~~~~~-------- 89 (366)
T TIGR00886 19 AFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLAVQ-------- 89 (366)
T ss_pred HhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 344555557889999999999999999999999999999999999 89999999999999999988887741
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh-------
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE------- 157 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~------- 157 (479)
+.+.+++.|+++|++.+. .+...++++|++|+++ |++..++.....++|..+++.+++.+..
T Consensus 90 -------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~ 158 (366)
T TIGR00886 90 -------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI---QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAG 158 (366)
T ss_pred -------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh---hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 455778899999998664 4667899999999888 8889998887888888888888777654
Q ss_pred ---ccchhhHHHH
Q 011716 158 ---NRGWNCSFKI 167 (479)
Q Consensus 158 ---~~gw~~~f~i 167 (479)
+.+||+.|++
T Consensus 159 ~~~~~~w~~~~~~ 171 (366)
T TIGR00886 159 LPAHLAWGWAFVI 171 (366)
T ss_pred ccccccccchhHH
Confidence 2489999943
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=190.85 Aligned_cols=343 Identities=13% Similarity=0.108 Sum_probs=199.8
Q ss_pred HHHHHHhhhhcC--CChhhHHHHHHH--HH---HHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 8 INFVAYFLKSMH--YPAAESAIMVNN--FM---GTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 8 ~~~~~yl~~~l~--~~~~~~g~i~~~--~~---~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
.....++.++.. .++++.+.+.+. +. +...+++++.|+++|| +||||+++.+..+..++..+++++++++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (394)
T TIGR00883 13 GFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATI 91 (394)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhh
Confidence 445556655543 455666655543 22 2334688999999999 899999999999999999998887532100
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh----
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE---- 156 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~---- 156 (479)
.......+++.|+++|++.+...+..++++.|.+|+++ |++..+....+..+|..+++.++..+.
T Consensus 92 --------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~ 160 (394)
T TIGR00883 92 --------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK---RGFYGSFQQVGAPVGLLLAALTVLLLSYLLG 160 (394)
T ss_pred --------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00012357889999999999999999999999999888 888999998899999999998877653
Q ss_pred ----hccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCc
Q 011716 157 ----ENRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDM 232 (479)
Q Consensus 157 ----~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479)
+.++||+.|.+.++..+++...... .++.++.++ + ++++.+ . .+
T Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~------------~~~~~~-~-------------~~-- 208 (394)
T TIGR00883 161 DDALLEWGWRIPFLVSAVLVLIGLYLRRN-LEETPVFEK---A------------QEKHKK-K-------------RG-- 208 (394)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHh-cCCChhHHH---H------------Hhcccc-c-------------cC--
Confidence 3578999998876655544332211 111100000 0 000000 0 00
Q ss_pred chhhhhhcccCCCcchhhhhhh-hhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeeh
Q 011716 233 FRVLDKALFDDTITAAQVEETK-TFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLA 311 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 311 (479)
+..+. ..+.+ .... ...........+....++...+. ..+.+......+.......+...+
T Consensus 209 -~~~~~-----------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~ 270 (394)
T TIGR00883 209 -PIRET-----------LTKHRKPFLL---GLGLVIATTTTFYLITTYLPTYL---TQTLGLSANSALLVLMLSLILFFI 270 (394)
T ss_pred -CHHHH-----------HHhchHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHhcCCChhHHHHHHHHHHHHHHH
Confidence 00000 00111 1111 11111111111111111111111 001000011222233333455566
Q ss_pred hhhccchhhhhhHhhhhccCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHh
Q 011716 312 SIPLYERSVHIFERKISAKYNIFRPLKRIGLGL-ALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLT 390 (479)
Q Consensus 312 ~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 390 (479)
..++.+++.||+++|.. +..+. +....+......... ..+.+......++.+++.+..
T Consensus 271 ~~~~~g~l~dr~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~ 329 (394)
T TIGR00883 271 TIPLSGALSDRIGRRPV-----------LIIFTVLAALLAVPLLMALLD----------SGSFTLFFFLVLGLALIGGMY 329 (394)
T ss_pred HHHHHHHHHHHhchHHH-----------HHHHHHHHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHHHHH
Confidence 67778888888776632 22222 222222112211110 123444555667778888888
Q ss_pred hhhhhhhhcccCCcchHHHHHHHH-HHHHhhhHHHHHHHHhhhh
Q 011716 391 LGGMLEFFYSEAPHSMRSISTALS-WCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 391 ~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~~~~~l~~~i~ 433 (479)
.+..+.++.|..|++.|+++.++. +....+|..++|.+.+.+.
T Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~ 373 (394)
T TIGR00883 330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV 373 (394)
T ss_pred hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence 889999999999999999999984 5667788889999998765
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=185.11 Aligned_cols=337 Identities=12% Similarity=0.046 Sum_probs=199.5
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccc----cchhHHH-HHHHHHHHHHHHHHHHHhhhcc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSF----LTRFTTF-ILFCTIELLGLILLTIQAQYSR 79 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~----~Grk~~~-~~~~~~~~~~~~l~~~~~~~~~ 79 (479)
++.....+.+.+++|+|.+|.|+.... .+...+ .++.|.++||+ +||||.+ +.+..+.++....+++..
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 344444555556889999999999655 444444 89999999993 2899974 566667777666665553
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR 159 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~ 159 (479)
...+...+....++.+.+.+...+...+++.|++|+++ |+++.++...+.++|.++++.+++.+.++.
T Consensus 79 ---------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~ 146 (356)
T TIGR00901 79 ---------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE---LGYGSTIYIVGYRAGMLLSGSLALVLASPE 146 (356)
T ss_pred ---------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh---hchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 12255556666777788888889999999999999888 999999999999999999999999998888
Q ss_pred c--------hhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCC
Q 011716 160 G--------WNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSND 231 (479)
Q Consensus 160 g--------w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (479)
| ||..|++.++..++..+..+...|+.+++++++++ ..+..+...+
T Consensus 147 g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~----------------------- 200 (356)
T TIGR00901 147 FANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKP---LTQAVLKPIR----------------------- 200 (356)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchh---HHHHHHHHHH-----------------------
Confidence 8 99999988887666554444333331111111100 0000000000
Q ss_pred cchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCccccccccc-ceee
Q 011716 232 MFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPL-TIML 310 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~ 310 (479)
+....+...+...+......+...+....+....+..+...+ ....+....... +..+
T Consensus 201 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----~~~~g~~~~~~~~~~~~ 259 (356)
T TIGR00901 201 -----------------EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFS----KEEIALVAKINGLLGAI 259 (356)
T ss_pred -----------------HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHhHHHHHHHHH
Confidence 000001100111111111112222222222222221111000 111122222222 2344
Q ss_pred hhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHh
Q 011716 311 ASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLT 390 (479)
Q Consensus 311 ~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 390 (479)
+...+.+++.||+++|.. +..+.++..++...+...... .+ ..|....+.+.+....++.+++++..
T Consensus 260 ~g~~~~g~l~~r~g~~~~-----------l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (356)
T TIGR00901 260 LGGLIGGIIMQPLNILYA-----------LLLFGIVQALTNAGFVWLASN-GH-HDGITFPHLLMLFLTITLEAVTGGLG 326 (356)
T ss_pred HHHHHHHHHHhhhhHHHH-----------HHHHHHHHHHHHHHHHHHHhc-Cc-ccccccchHHHHHHHHHHHHHHhHHH
Confidence 566677788888776643 566666666555544433111 00 00000023455666678889999999
Q ss_pred hhhhhhhhcccCCcchHHHHHHHHHHHHh
Q 011716 391 LGGMLEFFYSEAPHSMRSISTALSWCSTS 419 (479)
Q Consensus 391 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 419 (479)
++....+..+.+|+++||+..|+.+....
T Consensus 327 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 327 TVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 99999999999999999999999877543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-20 Score=189.02 Aligned_cols=333 Identities=14% Similarity=0.097 Sum_probs=219.2
Q ss_pred HhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchh
Q 011716 13 YFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQ 92 (479)
Q Consensus 13 yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (479)
.+..++.-|+...+++..+..+...+..+++|.++|| +.|||+++.+..+..+...++++... ....+
T Consensus 35 wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~L~~l~~-----------~~~~~ 102 (524)
T PF05977_consen 35 WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALLLAVLAF-----------FGLLS 102 (524)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHHH-----------hCcCC
Confidence 3344678889999999999999999999999999999 89999999999888876665554421 12226
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 011716 93 AAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVAL 172 (479)
Q Consensus 93 ~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~ 172 (479)
.+.+++.-++.|++.+...|+.++++.|..|+++ ..++.+.+....|+..++||.++|.+....|-.+.|.+.++..
T Consensus 103 ~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~---L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsf 179 (524)
T PF05977_consen 103 PWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED---LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSF 179 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999999999888 9999999999999999999999999998889889999988887
Q ss_pred HHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhhhh
Q 011716 173 GLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQVEE 252 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
++.+......+++.+ +++.+.++..+.++..++- . ..
T Consensus 180 l~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~ry--------------------------v--------------~~ 216 (524)
T PF05977_consen 180 LISILALLRWKPPPP---PSSLPRERFFSALREGLRY--------------------------V--------------RS 216 (524)
T ss_pred HHHHHHHHHcccccc---ccccchhhhhhhHHHHHHH--------------------------H--------------hc
Confidence 766555444333211 1111111111111111100 0 00
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhccCC
Q 011716 253 TKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYN 332 (479)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~ 332 (479)
.+.+...+........+......+.+.+..+..+.+ ....+.+....+++.++.+.+.. ++.+|.
T Consensus 217 ~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~------a~~yGll~a~~gvGai~Gal~~~----~l~~~~----- 281 (524)
T PF05977_consen 217 SPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGG------ASGYGLLLAAFGVGAILGALLLP----RLRRRL----- 281 (524)
T ss_pred chHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHHH----Hhhccc-----
Confidence 011111110001111111111111122222211111 11222333333333333333333 333322
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHH
Q 011716 333 IFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTA 412 (479)
Q Consensus 333 ~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g 412 (479)
+..+.+..+.++.+++++.+++. .+.+...+.+++.|++....+...++.+++..|+++||+..+
T Consensus 282 --~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~s 346 (524)
T PF05977_consen 282 --SSRRLVLLASLLFALALLLLALS-------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFS 346 (524)
T ss_pred --CcchhhHHHHHHHHHHHHHHhcc-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHH
Confidence 23333566777777666666653 245666777889999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHhhhh
Q 011716 413 LSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 413 ~~~~~~~lg~~~~~~l~~~i~ 433 (479)
++.+....+..+|..+.|.+.
T Consensus 347 i~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 347 IYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-20 Score=184.14 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=130.4
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
++...+.+.+++++|.++.+.|++.+.+.+++.+++++.|++.|| +|||+++..++.+++++..++..+...
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~~------- 91 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAEI------- 91 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 345566677789999999999999999999999999999999999 899999999999999998886554211
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh-------
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE------- 157 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~------- 157 (479)
.+++.+.+.|++.|+|.|...+..++++.+..|+++ +++..+......++|..+||.+++.+..
T Consensus 92 ------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 92 ------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST---ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred ------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 167788899999999999999999999999988877 7777888888999999999999887742
Q ss_pred -------------------ccchhhHHHHHHHHHHHHH
Q 011716 158 -------------------NRGWNCSFKISAVALGLAL 176 (479)
Q Consensus 158 -------------------~~gw~~~f~i~~~~~~~~~ 176 (479)
..+||++|.+.++..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2369999987766544443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-20 Score=210.47 Aligned_cols=338 Identities=10% Similarity=-0.012 Sum_probs=197.7
Q ss_pred hhhcCCCh-hhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHH--HHHHHH-HHHHHHhhhcccccccCCCCCc
Q 011716 15 LKSMHYPA-AESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCT--IELLGL-ILLTIQAQYSRLQPAMNRRPSH 90 (479)
Q Consensus 15 ~~~l~~~~-~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~--~~~~~~-~l~~~~~~~~~~~~~~~~~~~~ 90 (479)
+++.+.+. ...++..+++.+.+.++++++|+++|| +|||+++..... +..... .++....
T Consensus 43 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~~--------------- 106 (1140)
T PRK06814 43 SGALGAYNNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHLN--------------- 106 (1140)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 33444433 346788889999999999999999999 899998644222 222222 2222222
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHH
Q 011716 91 TQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAV 170 (479)
Q Consensus 91 ~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~ 170 (479)
+++.+++.|+++|++.+...|+..+++.|++|+++ |+++.++..++.++|.++||.++|++.+..+|++.|+..++
T Consensus 107 -s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~---~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~ 182 (1140)
T PRK06814 107 -SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE---LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMG 182 (1140)
T ss_pred -hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc---cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 67789999999999999999999999999999988 99999999999999999999999999999999998854444
Q ss_pred HHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhh
Q 011716 171 ALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQV 250 (479)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
..++++++.+. .++.+.+.++.+......+.....++. .
T Consensus 183 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~ 221 (1140)
T PRK06814 183 IAVLGWLASLF-IPKTGNAAPDLKIDRNIIRSTITLLKY----------------------------------------A 221 (1140)
T ss_pred HHHHHHHHHhh-CCCCCCCCCCCeeccchHHHHHHHHHH----------------------------------------H
Confidence 44443333322 222111111100000000000000000 0
Q ss_pred hhhhhhhhhhhHH-HHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhc
Q 011716 251 EETKTFLGLLPIF-ASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISA 329 (479)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~ 329 (479)
...+.+....... +..........+++ .+..+..+.+ ....+.+.....++.++...+.+++.++..++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~------~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~--- 291 (1140)
T PRK06814 222 KADKRIWLAILGISWFWLVGAVVLSQLP-LLAKETLGGD------ENVATLFLAVFSVGVAVGSFLASKLSEGRITL--- 291 (1140)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHcCCc------hHHHHHHHHHHHHHHHHHHHHHHHHhCCceee---
Confidence 0001111111111 11111111111111 1221111111 11233444444555566666666654432222
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---------CccchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 011716 330 KYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAEN---------HVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYS 400 (479)
Q Consensus 330 ~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 400 (479)
+.+..+.++.++..+.+...... ..... -...+.+.+++..++.|++.++.++..++.+.+
T Consensus 292 --------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 361 (1140)
T PRK06814 292 --------LYVPIGALLMGLFGLDLAFASSS--VPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQA 361 (1140)
T ss_pred --------eeehHHHHHHHHHHHHHHhcccc--cccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 11333333333333322221000 00000 000234556677788899999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 401 EAPHSMRSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 401 ~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
.+|+++||+++|+.++...+|..+++.+.+.+.
T Consensus 362 ~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 362 WANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred hCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=209.53 Aligned_cols=339 Identities=13% Similarity=0.029 Sum_probs=201.4
Q ss_pred HHHHHhhhhcCCCh--hhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 9 NFVAYFLKSMHYPA--AESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 9 ~~~~yl~~~l~~~~--~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+..++...++.+. ...+++.+++.++..++++++|+++|| +|||++++.+..+..++.++..++....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~~~~~~~~~~~~~~-------- 101 (1146)
T PRK08633 31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEVGLTLLIVLAYYLG-------- 101 (1146)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 34445555566554 447899999999999999999999999 8999999999877776665554432111
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc--------
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN-------- 158 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~-------- 158 (479)
+.+.+++.|+++|++.+...|+..+++.|++|+++ |++++++...+.++|.++|+.+++++.+.
T Consensus 102 -----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~ 173 (1146)
T PRK08633 102 -----WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN---LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSE 173 (1146)
T ss_pred -----cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc---chhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 57789999999999999999999999999999988 99999999999999999999999999875
Q ss_pred c-chhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhh
Q 011716 159 R-GWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLD 237 (479)
Q Consensus 159 ~-gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479)
+ +|++.+.+..+...+..++..+..++.+...++.... +. .... ....+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~----------------~~~~~ 223 (1146)
T PRK08633 174 ILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDK-------------KK-YLFP----------------KLLWR 223 (1146)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccc-------------cc-cccH----------------HHHHH
Confidence 2 3333333333222222222222223222111110000 00 0000 00000
Q ss_pred hhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCccc-Ccccccccccceeehhhhcc
Q 011716 238 KALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKI-PTQSLTVFPLTIMLASIPLY 316 (479)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~ 316 (479)
.. ......+.+.. ..+....++.........+..+. ...++.... ..+.+.....++.++...+.
T Consensus 224 ~~--------~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~ 289 (1146)
T PRK08633 224 NL--------KLLRSDRVLWL---AIIGLSYFWFISQLAQANFPAYA---KEVLGLDNTFQVQYLLAASAIGIGIGSLLA 289 (1146)
T ss_pred HH--------HHHhcCcHHHH---HHHHHHHHHHHHHHHHHhhHHHH---HHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000011111 11111111111111111111111 011100011 12233333344444555555
Q ss_pred chhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 011716 317 ERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLE 396 (479)
Q Consensus 317 ~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 396 (479)
+++.+|..++ +.+.++.++.+++.+.+... .+.+.+++..++.+++.++..+..++
T Consensus 290 g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~ 345 (1146)
T PRK08633 290 GRLSGRHIEL-----------GLVPLGALGLALSLFLLPTA-------------PSLASVLVLFFLFGFSAGLFIVPLNA 345 (1146)
T ss_pred HHHhCCceEc-----------cchhHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5555444332 22455666666555555542 14455666778889999999999999
Q ss_pred hhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011716 397 FFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSIT 432 (479)
Q Consensus 397 ~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i 432 (479)
++.+.+|++.||+++|+.++...+|..+++.+.+.+
T Consensus 346 ~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 346 LIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred HHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877766654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=180.25 Aligned_cols=362 Identities=11% Similarity=0.051 Sum_probs=217.1
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcccc-----chhHH-HHHHHHHHHHHHHHHHHHhhhcc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL-----TRFTT-FILFCTIELLGLILLTIQAQYSR 79 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~-----Grk~~-~~~~~~~~~~~~~l~~~~~~~~~ 79 (479)
..+.++.+++ +.|.+.++.+.. +.....+ +..++.|.++|| + ||||. ++.+.+...++...+++..
T Consensus 31 ~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~---- 102 (491)
T PRK11010 31 TSGTLQAWMT-VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFLE---- 102 (491)
T ss_pred HHHHHHHHHH-hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHcC----
Confidence 3455677765 569999999986 3333333 689999999999 8 99886 5566666667777776653
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh-c
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE-N 158 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~-~ 158 (479)
...+++.+.+.+++.+++.+...+...++..|++|+++ |+++.++...+.++|.++++.+++++.+ .
T Consensus 103 ---------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~---rg~~~~i~~~g~~lG~llg~~l~~~l~~~~ 170 (491)
T PRK11010 103 ---------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE---RGAGAAISVLGYRLAMLVSGGLALWLADRY 170 (491)
T ss_pred ---------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12256678888999999999999999999999999888 8999999999999999999999999988 4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhh
Q 011716 159 RGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDK 238 (479)
Q Consensus 159 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (479)
+|||..|++.++..++..+..+. .|+.+++++++++.++ ... .++.|
T Consensus 171 ~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~~~~---~~~----------------------------~~l~~- 217 (491)
T PRK11010 171 LGWQGMYWLMAALLIPCIIATLL-APEPTDTIPVPKTLEQ---AVV----------------------------APLRD- 217 (491)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccchhh---hHH----------------------------HHHHH-
Confidence 79999999877765555444333 2321111000000000 000 00000
Q ss_pred hcccCCCcchhhhhhhhhhhhhh-HHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCccccc-ccccceeehhhhcc
Q 011716 239 ALFDDTITAAQVEETKTFLGLLP-IFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLT-VFPLTIMLASIPLY 316 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~ 316 (479)
.-..+....... ...............++++. +..+.+.. ..+... ....+..++...+.
T Consensus 218 -----------~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~-~~~G~s~~------~~g~~~~~~g~i~~iiG~ll~ 279 (491)
T PRK11010 218 -----------FFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLI-RGVGFDAG------EVGLVNKTLGLLATIVGALYG 279 (491)
T ss_pred -----------HHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 000011111110 11111111111222222221 11111111 122222 22234556777888
Q ss_pred chhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 011716 317 ERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLE 396 (479)
Q Consensus 317 ~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 396 (479)
+++.||+++|.. +..+.++..+..+.+...... ..+.+.+....++..+..++..+...+
T Consensus 280 G~L~dr~g~~~~-----------l~i~~~l~~l~~l~~~~l~~~---------~~~~~~l~~~~~l~~~~~g~~~~~~~a 339 (491)
T PRK11010 280 GILMQRLSLFRA-----------LMIFGILQGVSNAGYWLLSIT---------DKNLYSMGAAVFFENLCGGMGTAAFVA 339 (491)
T ss_pred HHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876532 333333333333222211100 112333444455555555666677788
Q ss_pred hhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 011716 397 FFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIY 474 (479)
Q Consensus 397 ~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~ 474 (479)
+..+.+|++.+++..|+.+....+|..+++.+.|.+.+ ..++...|.+.+++++.+++....
T Consensus 340 ~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----------------~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 340 LLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE----------------AHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhChHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999988888877652 123455677777777776555543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=174.30 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=123.0
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcccc-----chhH-HHHHHHHHHHHHHHHHHHHhhhcc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL-----TRFT-TFILFCTIELLGLILLTIQAQYSR 79 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~-----Grk~-~~~~~~~~~~~~~~l~~~~~~~~~ 79 (479)
....+|.|+++ .|++.+|.|++...... .+..+++|+++|| + |||| .++.+..+.+++..++++..
T Consensus 18 ~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~---- 89 (402)
T PRK11902 18 TSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCP---- 89 (402)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcC----
Confidence 34678889885 59999999999766654 6889999999999 7 8776 68877888887777776662
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc-
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN- 158 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~- 158 (479)
...+++.+....++.+...+...|...+++.|++|+++ |+++.++...+.++|.++++.+++++.+.
T Consensus 90 ---------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~---r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~ 157 (402)
T PRK11902 90 ---------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE---RGAGAAVKVLGYRLAMLVSGGLALWLADRV 157 (402)
T ss_pred ---------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh---hhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 11245566666677788888899999999999999888 99999999999999999999999998885
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 011716 159 RGWNCSFKISAVALGLALC 177 (479)
Q Consensus 159 ~gw~~~f~i~~~~~~~~~~ 177 (479)
+|||..|++.++..++..+
T Consensus 158 ~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 158 LGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 5999999987776554444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=177.55 Aligned_cols=360 Identities=12% Similarity=0.081 Sum_probs=210.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHH
Q 011716 23 AESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYA 102 (479)
Q Consensus 23 ~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 102 (479)
++.+++.+.+.++..+++++.|+++|+ +|||+.++.+.+++.+|+++++.+. +...+.++|++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~----------------~~~~l~~GR~l 151 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP----------------SWYQLIVGRIL 151 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh----------------hHHHHHHHHHH
Confidence 345899999999999999999999999 8999999999999999999999997 88899999999
Q ss_pred HHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHh
Q 011716 103 MATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN-RGWNCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 103 ~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~-~gw~~~f~i~~~~~~~~~~~~~~ 181 (479)
+|+|.|+.....+.+++|..|++. |+...+......++|..++..++....+. ++||..+.+..+..++..+. .+
T Consensus 152 ~G~g~G~~~~~~piy~sEiap~~~---RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~ 227 (513)
T KOG0254|consen 152 TGLGVGGASVLAPVYISEIAPAHI---RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-ML 227 (513)
T ss_pred hccchhhhhhcchhhHhhcCChhh---hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HH
Confidence 999999999999999999999888 99999998889999999985555444332 48998888766665544444 44
Q ss_pred hcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCc----chhhhhhhhhh
Q 011716 182 GFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTIT----AAQVEETKTFL 257 (479)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 257 (479)
..|+.|+--.+.....+..+.+ ..++..+ ..+.+.+.. + .. .+......... ..+... +...
T Consensus 228 ~~pesp~~L~~~g~~~~a~~~l-~~l~g~~--~~~~~~~~~--------~-~~-~~~~~~~~~~~~~~~~~~l~~-~~~~ 293 (513)
T KOG0254|consen 228 FLPESPRWLIEKGRLEEAKRSL-KRLRGLS--PEDVEVELE--------L-LK-IKLLVEAEVAEGKASWGELFS-PKVR 293 (513)
T ss_pred hCCCChHHHHHcCChHHHHHHH-HHHhCCC--CcchHHHHH--------H-HH-HHHHHhhhcccccccHHHhcC-cchH
Confidence 4443222111111111111111 1111100 000000000 0 00 00000000000 000000 1111
Q ss_pred hhhhHHHHHHHHHHhhh-cccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhccCCCCCc
Q 011716 258 GLLPIFASTIMMNCCLA-QLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRP 336 (479)
Q Consensus 258 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~ 336 (479)
+..........+..... ....+|..+. .+.. +...+......+..+...+...+...+.||++||..
T Consensus 294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~i--f~~~--g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l-------- 361 (513)
T KOG0254|consen 294 KRLIIGLLLQLFQQLTGINYVFYYSTTI--FKSA--GLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKL-------- 361 (513)
T ss_pred HHHHHHHHHHHHHHHhCCceEEeehHHH--HHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--------
Confidence 11111111111111110 0111111111 1111 111111233333344455555566788999988865
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHH
Q 011716 337 LKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWC 416 (479)
Q Consensus 337 ~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 416 (479)
+..+...+.++.+.++.................+..+...++..........|..+.+..|..|.+.|+++.++...
T Consensus 362 ---ll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~ 438 (513)
T KOG0254|consen 362 ---LLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVA 438 (513)
T ss_pred ---HHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHH
Confidence 77888888888887776543210000001122344444455555556666678888899999999999999999988
Q ss_pred HHhhhHHHHHHHHhhh
Q 011716 417 STSMGYFLSSALVSIT 432 (479)
Q Consensus 417 ~~~lg~~~~~~l~~~i 432 (479)
.+.+.+.+-.......
T Consensus 439 ~n~~~~~~v~~~~~~~ 454 (513)
T KOG0254|consen 439 VNWLWNFLISFFFPFI 454 (513)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777655554443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-18 Score=170.78 Aligned_cols=379 Identities=12% Similarity=0.085 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHH
Q 011716 25 SAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMA 104 (479)
Q Consensus 25 ~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 104 (479)
-+.+++++.++.+++++.+|+++|| +|||..+++..++..++.++..++...+ +.-.++++|++.|
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~-------------~~e~li~GR~i~G 127 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAP-------------SFEMLILGRLIVG 127 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHH
Confidence 3567788899999999999999999 8999999999999988888877775333 6678999999999
Q ss_pred HhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH-HHHh-hccchhhHHHHHHHHHHHHHHHHHhh
Q 011716 105 TGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVM-VWIE-ENRGWNCSFKISAVALGLALCIFTIG 182 (479)
Q Consensus 105 ~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~-~~l~-~~~gw~~~f~i~~~~~~~~~~~~~~~ 182 (479)
+..|......+-++.|..|++- ||..-....++.++|..+|..++ ..+. ..-.|++.+.+..+..++.++....
T Consensus 128 l~~gl~~~~~pmyl~E~sP~~~---RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~- 203 (485)
T KOG0569|consen 128 LACGLSTGLVPMYLTEISPKNL---RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPF- 203 (485)
T ss_pred HHhHHHHHHHHHHHhhcChhhh---ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999998 88877778888888888885543 2233 3346998888888776665554333
Q ss_pred cccceecC-CCCCchhhHHHHHHHHHhhccccccchhhhcc---CCCCCCCCCcchhhhhhcccCCCcchhhhhhhhhhh
Q 011716 183 FPIYRYKR-PSGSPITRIFKVIASAIRNRKASRSEMTEQIA---SPGATRSNDMFRVLDKALFDDTITAAQVEETKTFLG 258 (479)
Q Consensus 183 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (479)
.|+.|+-- .++++.++..+.++. ++.++....+.++... +++.+..++ .++.|. -+.++. |
T Consensus 204 ~PESPk~Ll~~k~~~~~A~~sl~~-y~G~~~~~~~~e~~~~e~~~~~~~~~~~-~sl~~~------------~~~~~l-R 268 (485)
T KOG0569|consen 204 LPESPKYLLIKKGDEEEARKALKF-YRGKEDVEAEIEEMLREIEEEELEKKKQ-ISLRQL------------LKNPTL-R 268 (485)
T ss_pred CCCCcchHHHHcCCHHHHHHHHHH-HhCCCcchhHHHHHHHHHHHhccccccC-CcHHHH------------hcCcch-h
Confidence 34333210 011111111111111 1111111111111000 000000011 111111 110111 1
Q ss_pred hhhHHHHHHHHHH-hhhcccchhhhhhhhcccCCCCccc-CcccccccccceeehhhhccchhhhhhHhhhhccCCCCCc
Q 011716 259 LLPIFASTIMMNC-CLAQLQTFSVQQGIIMNRTINNFKI-PTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRP 336 (479)
Q Consensus 259 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~ 336 (479)
.. +.....+... -+....... ++...+-.+- |... ...+.....+.+.++...+...++||++||..
T Consensus 269 ~~-~~i~~~v~~~qq~sGi~ai~-~Yst~i~~~a-G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL-------- 337 (485)
T KOG0569|consen 269 RP-LLIGIVVSFAQQFSGINAIF-FYSTSIFKTA-GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL-------- 337 (485)
T ss_pred HH-HHHHHHHHHHHHhcCcceeH-HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH--------
Confidence 11 1111111111 111111100 0000000000 1111 12233333455667777788899999998854
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHH-HhhhhhhhhhcccCCcchHHHHHHHHH
Q 011716 337 LKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDM-LTLGGMLEFFYSEAPHSMRSISTALSW 415 (479)
Q Consensus 337 ~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~rg~~~g~~~ 415 (479)
++.+..+..+..+.+.......+.. .++-.+..+...++..+... ...|..+-+..|++|++.|+.++++..
T Consensus 338 ---ll~~~~~~~~~~~~~~~~~~l~~~~----~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~ 410 (485)
T KOG0569|consen 338 ---LLISLSLMAVALLLMSIALFLSNSF----GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVAT 410 (485)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHH
Confidence 4555555544444444332211000 01111222344444444333 347889999999999999999999999
Q ss_pred HHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011716 416 CSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLN 471 (479)
Q Consensus 416 ~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~ 471 (479)
..+.+.+++-....+.+....+ .+.|..+.+.+.+..+.
T Consensus 411 ~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~i~~~~~~i~ 449 (485)
T KOG0569|consen 411 AVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFVIPLAIFLIY 449 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHHHHHHHHHHH
Confidence 9999999998888887763332 24466666666555443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=168.40 Aligned_cols=383 Identities=12% Similarity=0.062 Sum_probs=216.3
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcc---ccchhHHHHHH-HHHHHHHHHHHHHHhhhccccc
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDS---FLTRFTTFILF-CTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr---~~Grk~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
.+++++|+ +++|.++.+++++..+..+...+.+|+.|+++|| ++||||.++.+ .....++..+++.+.+......
T Consensus 24 ~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~ 102 (477)
T TIGR01301 24 LSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFG 102 (477)
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcc
Confidence 45666666 5799999999999999999999999999999993 27999998875 5555556666666542211100
Q ss_pred c-cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHH--hhcc
Q 011716 83 A-MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWI--EENR 159 (479)
Q Consensus 83 ~-~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l--~~~~ 159 (479)
+ .+..+.........++..+..++....++...++++|..|+++|+ ++.+.++.....++|.++|+.++++. .+..
T Consensus 103 ~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~-~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 103 DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR-TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 0 000000111233444455556677888888899999999987622 35788888899999999999999875 2211
Q ss_pred -------------chhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCC
Q 011716 160 -------------GWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGA 226 (479)
Q Consensus 160 -------------gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (479)
+.+..|++.++..+++.++.....||.+..++++.+ +++.+..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-------------~~~~~~~~---------- 238 (477)
T TIGR01301 182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-------------NSEAAPPS---------- 238 (477)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-------------hhhccccc----------
Confidence 568899998888887777766665553321111100 00000000
Q ss_pred CCCCCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhh-hhcccCCCCcccC-----ccc
Q 011716 227 TRSNDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQG-IIMNRTINNFKIP-----TQS 300 (479)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~-----~~~ 300 (479)
++..+ ..+.+.. ..-.+..|...+.....+..+.-|..+..+.+-+.-+. .+-+.+- +...+ ..+
T Consensus 239 ~~~~~-~~~~~i~-------~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~-~~~y~~gvr~G~~ 309 (477)
T TIGR01301 239 KHGEE-AFFGELF-------GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ-GAKYDDGVRAGAF 309 (477)
T ss_pred ccchh-hhHHHHH-------HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc-hhHHHHHHHHHHH
Confidence 00000 0000000 00001112222222233333333333333333332211 0000000 00000 111
Q ss_pred ccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-h---c----CCccch
Q 011716 301 LTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAA-A---E----NHVTLS 372 (479)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~-~---~----~~~~~~ 372 (479)
....+.+... +...+..++.||..+ ++..-..+.++.+++++...+.+.-..+. . + .++...
T Consensus 310 ~l~~~s~~~~----i~s~~l~~l~~~~g~------~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 379 (477)
T TIGR01301 310 GLMLNSVVLG----ITSIGMEKLCRGWGA------GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGI 379 (477)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHhcc------chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhh
Confidence 1222222222 333344444444320 11113677777777777777654210000 0 0 000011
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcccCCc--chHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 373 VFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPH--SMRSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 373 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~--~~rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
.+..+..+.+.|+.....+...++++.+..|+ +..|..+|+.|+...+.+.+.....|.+.
T Consensus 380 ~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~ 442 (477)
T TIGR01301 380 KASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWD 442 (477)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778999999999999999999999995 55699999999999999999998887754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=164.26 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=136.7
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHH
Q 011716 16 KSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAI 95 (479)
Q Consensus 16 ~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (479)
++++-..++.|++++++.+.+.+.+++.|.+.|| +|+|-.+++|+.+....+++.++.. +++.
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~----------------sy~~ 161 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN----------------SYPM 161 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc----------------hhHH
Confidence 3567778899999999999999999999999999 8999999999999999999999997 7889
Q ss_pred HHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 011716 96 LYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLA 175 (479)
Q Consensus 96 l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~~ 175 (479)
+++.|.+||+|.+...++..++++|.+|++. +|++++|+.-....+|-++||.+||.+.+..|++.+|.+-++..++.
T Consensus 162 l~vAR~LQgvgsA~~~tsglamlAd~f~~d~--er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld 239 (464)
T KOG3764|consen 162 LFVARSLQGVGSAFADTSGLAMLADVFPEDN--ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLD 239 (464)
T ss_pred HHHHHHHhhhhHHHHHhhhHHHHHHHcccch--hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHH
Confidence 9999999999999999999999999999865 48999999988999999999999999999999999999988877776
Q ss_pred HHHHHhhcc
Q 011716 176 LCIFTIGFP 184 (479)
Q Consensus 176 ~~~~~~~~~ 184 (479)
..+.++..+
T Consensus 240 ~~L~l~vi~ 248 (464)
T KOG3764|consen 240 GALQLLVIE 248 (464)
T ss_pred HHHHHheeC
Confidence 666555443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=156.07 Aligned_cols=119 Identities=11% Similarity=0.062 Sum_probs=106.0
Q ss_pred cCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHH
Q 011716 18 MHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILY 97 (479)
Q Consensus 18 l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (479)
.+.+..-+|.+-+.|.+...+.++..|.++|| +|||.+++.|+...++...+.+.+. +...+.
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~----------------~F~afv 125 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR----------------NFAAFV 125 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH----------------HHHHHH
Confidence 34455668889999999999999999999999 7999999999999999999999987 565677
Q ss_pred HHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh
Q 011716 98 TGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE 157 (479)
Q Consensus 98 ~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~ 157 (479)
+.|++.|+.-|-. ....++++|..++++ |+..++....+..+|.++||.+||++.+
T Consensus 126 ~aR~l~Gi~kgnl-~v~rAiisdV~sek~---r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 126 LARFLGGIFKGNL-SVIRAIISDVVSEKY---RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhhhccCch-HHHHHHHHhhcChhh---ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 7799999987654 667799999999988 9999999999999999999999999987
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-16 Score=160.44 Aligned_cols=371 Identities=15% Similarity=0.094 Sum_probs=209.8
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
..++++.|++ +.|+|+.|+|.+.+...+...+.+++.|+++||+..+||++.+..++.++...+....+
T Consensus 21 ~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~---------- 89 (400)
T PF03825_consen 21 FLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS---------- 89 (400)
T ss_pred HHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 3467788887 46899999999999999999999999999999954578888777777666655555443
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHH-HHHHhhccch---
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATV-MVWIEENRGW--- 161 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~-~~~l~~~~gw--- 161 (479)
+.+.+.+..++..+...+..|..+++.-+...+ +++-++-....+.+|.+++... ++++....++
T Consensus 90 ------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~-----~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~ 158 (400)
T PF03825_consen 90 ------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD-----RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGT 158 (400)
T ss_pred ------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc-----ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccc
Confidence 444566667777888888889998888887763 3334555566677887777544 2333332222
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcc
Q 011716 162 NCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALF 241 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (479)
...+++.+....+... ..+..|+.+.++.++++.+ .. .+.|..+
T Consensus 159 ~~~~~i~~~~~~ll~~-~~l~lp~~~~~~~~~~~~~--------------~~--------------------~~~~~~~- 202 (400)
T PF03825_consen 159 SLIFYIAAILSLLLAG-FALFLPKTPPKRSAKESVK--------------KL--------------------LGLDALK- 202 (400)
T ss_pred cHHHHHHHHHHHHHHH-HHHhCCCCccccccCCCcc--------------cc--------------------cchHHHH-
Confidence 2345554443222211 1222233221100000000 00 0000000
Q ss_pred cCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCccc-Ccccccccccceeehhhhccchhh
Q 011716 242 DDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKI-PTQSLTVFPLTIMLASIPLYERSV 320 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~ 320 (479)
-.++ ++. ..+++............+++...+. + ++++... ..+....+..+..+..-...+++.
T Consensus 203 -------llk~-~~~---~~Fll~~~l~~~~~~~~~~f~~~yl---~-~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~ 267 (400)
T PF03825_consen 203 -------LLKN-PRF---LVFLLAAFLIGISHAAYYTFFSIYL---Q-ELGGYSGSTIGILWALGVVAEIPFFFFSGRFL 267 (400)
T ss_pred -------HhcC-ccH---HHHHHHHHHHHHHHHHHHHHHHHHH---H-HcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 111 1122222222222222222222111 1 1111111 112222233333334333444443
Q ss_pred hhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 011716 321 HIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYS 400 (479)
Q Consensus 321 ~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 400 (479)
.|++ ..+.+.++.+..++-+.+++..+++ .......+.+...++|...+........++.+
T Consensus 268 ~r~g-----------~~~ll~~a~~~~~vR~~l~a~~~~~--------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~ 328 (400)
T PF03825_consen 268 KRFG-----------IKWLLLLALVAYAVRWLLYAYFSDP--------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDR 328 (400)
T ss_pred HhcC-----------HHHHHHHHHHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3333 4444788888888888888765211 00111223334467999999999999999999
Q ss_pred cCCcchHHHHHHHHHH-HHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011716 401 EAPHSMRSISTALSWC-STSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAKR 478 (479)
Q Consensus 401 ~~P~~~rg~~~g~~~~-~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~~ 478 (479)
.+|++.|++++++++. ..++|..+|..+.|.+.+..+.+ ..-.+...+.+++++.++..+++.++.|+
T Consensus 329 ~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~----------~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 329 IAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR----------GMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch----------hhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999874 57899999999999876332211 11223445677777777777666666554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=169.04 Aligned_cols=347 Identities=12% Similarity=0.057 Sum_probs=222.0
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhc----cccchhHHHH-HHHHHHHHHHHHHHHHhhhccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISD----SFLTRFTTFI-LFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laD----r~~Grk~~~~-~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
...++..|+++.+|+++..+|.+..+..+...+..|+.|+++| | +||||..+ .+..+.+++.+++.... |.
T Consensus 20 ~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~llf~~~--p~- 95 (428)
T PF13347_consen 20 LSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLLFSPP--PA- 95 (428)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHhhccc--cc-
Confidence 3457788889999999999999999999999999999999999 7 79766555 56777777777766441 00
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc-
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR- 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~- 159 (479)
+. ........+.+..++..++.........++..|..++++ +|.+..++.....++|..+...+.+.+.+..
T Consensus 96 ----~~-~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g 168 (428)
T PF13347_consen 96 ----GL-SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--ERTRLSSWRMIFSMIGSLLASFLAPILVSWFG 168 (428)
T ss_pred ----hh-hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 00 011133445666777789999999999999999988643 3888888877788888876666666554322
Q ss_pred ------chhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcc
Q 011716 160 ------GWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMF 233 (479)
Q Consensus 160 ------gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479)
+|++...+.++...+...+.....|+.+++.+++++. .
T Consensus 169 ~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~------------------------------------~ 212 (428)
T PF13347_consen 169 GGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK------------------------------------I 212 (428)
T ss_pred cCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccc------------------------------------c
Confidence 5888777777666666555555444411111111000 0
Q ss_pred hhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhh
Q 011716 234 RVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASI 313 (479)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (479)
++.|.. ++....|.... +.......+.......+...+...+.-.+ +-..+.......+..++..
T Consensus 213 ~~~~~~--------~~~~~nr~~~~---l~~~~~~~~~~~~~~~~~~~y~~~~vl~~----~~~~~~~~~~~~~~~~v~~ 277 (428)
T PF13347_consen 213 SLRDSL--------RSLFRNRPFRI---LLLAFFLQWLAFALMNTFLPYYFTYVLGN----EGLISIFMLIFFVASIVGS 277 (428)
T ss_pred ccccch--------hhhcccchHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHhcC----chhhHHHHHHHHHHHHHHH
Confidence 000000 00000111111 22222222222222222222221111111 1112233334455667777
Q ss_pred hccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhh
Q 011716 314 PLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGG 393 (479)
Q Consensus 314 ~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 393 (479)
++.+++.+|+++|.. ...+.++..++.+....... .+.++.++..++.+++.+..++.
T Consensus 278 ~~~~~l~~r~gk~~~-----------~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~l~gi~~~~~~~~ 335 (428)
T PF13347_consen 278 PLWGRLSKRFGKKKV-----------YIIGLLLAALGFLLLFFLGP-----------GSPWLVLILFILAGIGYGAFFVI 335 (428)
T ss_pred HHHHHHHHHccceee-----------hhhhHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHhHhhhcccccc
Confidence 888888877766643 67777777777777666531 25677788889999999999999
Q ss_pred hhhhhcccCC-------cchHHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 011716 394 MLEFFYSEAP-------HSMRSISTALSWCSTSMGYFLSSALVSITNLVS 436 (479)
Q Consensus 394 ~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~ 436 (479)
.+++..|..+ ++..|+..|++++...++..++..+.+.+....
T Consensus 336 ~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 336 PWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred cccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999887 355799999999999999999999999876444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=163.35 Aligned_cols=342 Identities=12% Similarity=0.074 Sum_probs=184.4
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcccc----chhHHH-HHHHHHHHHHHHHHHHHhhhccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL----TRFTTF-ILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~----Grk~~~-~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
+.++++.|+++.+|+++.++|.+.....+...+..++.|+++|| . ||||.. ..+.+...+...++...+. .
T Consensus 27 ~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~--~- 102 (448)
T PRK09848 27 GALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDS-VNTRWGKFRPFLLFGTAPLMIFSVLVFWVPT--D- 102 (448)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeec-CCCCCcCchHHHHHHHHHHHHHHHHHHhCcC--C-
Confidence 45678889999999999999999999999999999999999999 5 777755 4454444444443321110 0
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHH-----HhhhHHHHHHHHHHH
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFS-----LCAGGLVAATVMVWI 155 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~ig~~ig~~~~~~l 155 (479)
. ..........+...+.+++.+...+...++..+..++.+ +|.+..++..++ .+++..++|.+.+..
T Consensus 103 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 103 -----W-SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--SRARLGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred -----C-CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 000123334455567788888888888888787776533 256655554333 345666666666543
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchh
Q 011716 156 EENRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRV 235 (479)
Q Consensus 156 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (479)
.......+..+. .++.+++.+.........+++.+++.+.....+..+..++
T Consensus 175 g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~--------------------------- 226 (448)
T PRK09848 175 PEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKR--------------------------- 226 (448)
T ss_pred CCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHHHHHHhC---------------------------
Confidence 221111111111 1111222221111111111111111000000000000000
Q ss_pred hhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhccc---chhhhhhhhcccCCCCcccCcccccccc-cceeeh
Q 011716 236 LDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQ---TFSVQQGIIMNRTINNFKIPTQSLTVFP-LTIMLA 311 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 311 (479)
.|.... ..+.....+..+.... +++.++..+.+ . ..+.+...+ .+..++
T Consensus 227 -----------------n~~f~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~-~~~~~~~~~~~~~~~~ 279 (448)
T PRK09848 227 -----------------NRPLFM---LCIGALCVLISTFAVSASSLFYVRYVLNDT------G-LFTVLVLVQNLVGTVA 279 (448)
T ss_pred -----------------CchHHH---HHHHHHHHHHHHHHHhhhheeeEeeecCCh------H-HHHHHHHHHHHHHHHH
Confidence 011111 1111111222211111 22222111100 1 111111111 233344
Q ss_pred hhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhh
Q 011716 312 SIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTL 391 (479)
Q Consensus 312 ~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 391 (479)
..++.+++.+|+++|. .+..|.++..++.+.+.... ..+.+.+....++.++|++...
T Consensus 280 ~~~l~~~l~~r~g~~~-----------~~~~g~~~~~i~~~~~~~~~-----------~~~~~~~~~~~~l~g~G~~~~~ 337 (448)
T PRK09848 280 SAPLVPGMVARIGKKN-----------TFLIGALLGTCGYLLFFWVS-----------VWSLPVALVALAIASIGQGVTM 337 (448)
T ss_pred HHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHcC-----------chhHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555443 36777777776666555421 1244555666788999999999
Q ss_pred hhhhhhhcccCCcc-------hHHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 011716 392 GGMLEFFYSEAPHS-------MRSISTALSWCSTSMGYFLSSALVSITNLVS 436 (479)
Q Consensus 392 ~~~~~~~~~~~P~~-------~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~ 436 (479)
+..+++..+..|++ ++|.+.|++++.+.+|..+++.+.+.+....
T Consensus 338 ~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 338 TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999988754 4699999999999999999999998875443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=162.59 Aligned_cols=345 Identities=10% Similarity=0.057 Sum_probs=194.7
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccc---cch-hHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSF---LTR-FTTFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~---~Gr-k~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
.+..+++.|+++.+|++++++|.+..+..+...+..|+.|+++||. +|| |+.++.+....++...++...+..
T Consensus 27 ~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~--- 103 (444)
T PRK09669 27 TVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDF--- 103 (444)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCC---
Confidence 3456788899999999999999999999999999999999999992 366 455556666777766555443210
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh---
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE--- 157 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~--- 157 (479)
........+++...+.+.+.........++.+|+.++++ +|.+..++.....++|..+++.+...+..
T Consensus 104 -------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~--eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~ 174 (444)
T PRK09669 104 -------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR--ERHSLQSWRFALSFIGGLIVSVIALPLVDILG 174 (444)
T ss_pred -------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 011234455556666676677777788899999885422 37777788777888888887765444332
Q ss_pred ----ccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcc
Q 011716 158 ----NRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMF 233 (479)
Q Consensus 158 ----~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479)
..+|+..+.+.+++..+..++.+...|+. .+++++++ ....+..+...+
T Consensus 175 ~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~-~~~~~~~~-~~~~~~~~~~~~------------------------- 227 (444)
T PRK09669 175 KGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER-YTPEVDNS-SSVWKDLKLLLG------------------------- 227 (444)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe-cCCCCcCC-CCHHHHHHHHhC-------------------------
Confidence 24677777666655444433333322221 11111000 000000000000
Q ss_pred hhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhh
Q 011716 234 RVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASI 313 (479)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (479)
.|.........+..............++..+. +... . ....+.....+..++..
T Consensus 228 -------------------n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~--~~~~----~-~~~~~~~~~~i~~ii~~ 281 (444)
T PRK09669 228 -------------------NSQWRIMFIFNVVLLTAVVTRGGATLYYVNYV--LLRP----D-LATLFLVTGMIAGLFGA 281 (444)
T ss_pred -------------------CchHHHHHHHHHHHHHHHHHHhhhhheeeeee--cCCH----H-HHHHHHHHHHHHHHHHH
Confidence 01111111111111111111111111111110 0000 1 11112222223334555
Q ss_pred hccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhh
Q 011716 314 PLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGG 393 (479)
Q Consensus 314 ~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 393 (479)
++.+++.+|.++|.. ...++++..+......... ..+.+.+.+..++.+++.+...+.
T Consensus 282 ~~~~~l~~r~gk~~~-----------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~g~~~~~~~~~ 339 (444)
T PRK09669 282 LLSERLLGKFDRVRA-----------FKWTIVAFVILSALIFFIP-----------PSNVWLIFALNILFNFIQNLTTPL 339 (444)
T ss_pred HHHHHHHHHhChHHH-----------HHHHHHHHHHHHHHHHHhC-----------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 666777766655532 4444444333222222221 113444555667889999999999
Q ss_pred hhhhhcccCC-------cchHHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 011716 394 MLEFFYSEAP-------HSMRSISTALSWCSTSMGYFLSSALVSITNLVS 436 (479)
Q Consensus 394 ~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~ 436 (479)
.++++.|.++ ++..|...|.+++...+|..+|+.+.+.+.+..
T Consensus 340 ~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 340 QWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999988876 445678889999999999999999999876544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=166.58 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=126.1
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHH
Q 011716 16 KSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAI 95 (479)
Q Consensus 16 ~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (479)
+..+.+.....+..+.+.++..+++++.|.++|| +|||++++.++.+..++.++.++++ ++..
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~----------------~~~~ 173 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP----------------NYWM 173 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC----------------cHHH
Confidence 5667788889999999999999999999999999 8999999999999999999999997 8889
Q ss_pred HHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 011716 96 LYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLA 175 (479)
Q Consensus 96 l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~~ 175 (479)
+++.|++.|++.++...+...+++|.+++++ |+.+.++ ......++.+++..++++.. +||+.+++......+.
T Consensus 174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~---R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~ 247 (521)
T KOG0255|consen 174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ---RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLF 247 (521)
T ss_pred HHHHHHHHHhhccchhHHhHhhheeecCcch---hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 8888888 77788888889999999876 8999999877665554
Q ss_pred HHH
Q 011716 176 LCI 178 (479)
Q Consensus 176 ~~~ 178 (479)
++.
T Consensus 248 ~~~ 250 (521)
T KOG0255|consen 248 LLL 250 (521)
T ss_pred HHH
Confidence 444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=176.17 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=137.8
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc---
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ--- 81 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 81 (479)
+........+++++++++++.|++.+.+.++..++.++.|+++|| +||||.+.++.+++++|++++++.+-+..-.
T Consensus 50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence 344555667788999999999999999999999999999999999 8999999999999999999998874211000
Q ss_pred -------------cc-c-----------------CCCCC-chhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhh
Q 011716 82 -------------PA-M-----------------NRRPS-HTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRL 129 (479)
Q Consensus 82 -------------~~-~-----------------~~~~~-~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~ 129 (479)
++ | ..+.. ...+..++++|+++|+|.+...+...+++.|++|+++
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~--- 205 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN--- 205 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc---
Confidence 00 1 00000 1135577889999999999999999999999999988
Q ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHHhhcc----------------------chhhHHHHHHHHHHHHHHHHHh
Q 011716 130 ISAFFNWFFFSLCAGGLVAATVMVWIEENR----------------------GWNCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 130 ~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~----------------------gw~~~f~i~~~~~~~~~~~~~~ 181 (479)
|+.++++.+....+|.++|+++++++.+.+ +|+..|++.+++.++..+.++.
T Consensus 206 ~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 206 SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987543 2777888777665554444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-16 Score=162.54 Aligned_cols=351 Identities=9% Similarity=0.012 Sum_probs=197.1
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhc----cccch-hHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISD----SFLTR-FTTFILFCTIELLGLILLTIQAQYSR 79 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laD----r~~Gr-k~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (479)
.+.++++.|+++.+|+++.++|.+..+..+...+..|+.|+++| | +|| |+-++.+....+++..++...+..
T Consensus 24 ~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~llf~~p~~-- 100 (473)
T PRK10429 24 IVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLFLLFSAHLF-- 100 (473)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHHHHHcCCCC--
Confidence 34567899999999999999999999999999999999999999 6 598 555555666666666555332100
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCC-CcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh-
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLD-HSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE- 157 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~- 157 (479)
+.......+.+.-.+.+++.........++..|..+ ++| |.+..++.....++|+.+.+.+...+..
T Consensus 101 --------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e---R~~l~~~~~~~~~ig~~~~~~~~~~~~~~ 169 (473)
T PRK10429 101 --------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE---REQLVPYPRFFASLAGFVTAGFTLPFVNY 169 (473)
T ss_pred --------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011123344555566778888888889999999885 445 8888888777788887666655443322
Q ss_pred ------ccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCC
Q 011716 158 ------NRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSND 231 (479)
Q Consensus 158 ------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (479)
..+|+....+.++..++..+..+...|+.+. +++.++ +++ ++
T Consensus 170 ~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~-------------~~~------------------~~ 217 (473)
T PRK10429 170 VGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVS-------------AEG------------------SH 217 (473)
T ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-cccccc-------------ccc------------------cC
Confidence 1245555555444444433333332222110 000000 000 00
Q ss_pred cchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeeh
Q 011716 232 MFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLA 311 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 311 (479)
.++.|..+ .....|.... +.......+.......+...+...+. .++ ....+.+..+..+..++
T Consensus 218 -~~~~~~~~--------~~~~n~~~~~---ll~~~~~~~~~~~~~~~~~~y~~~y~---~~~-~~~~~~~~~~~~i~~ii 281 (473)
T PRK10429 218 -LTLKDIVA--------LIYKNDQLSC---LLGMALAYNIASNIINGFAIYYFTYV---IGD-ADLFPYYLSYAGAANLV 281 (473)
T ss_pred -CCHHHHHH--------HHhcCHHHHH---HHHHHHHHHHHHHHHhhheeeEEEEE---CCC-HHHHHHHHHHHHHHHHH
Confidence 00001000 0000111211 11112212211111111111111010 000 00112223333345566
Q ss_pred hhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhh
Q 011716 312 SIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTL 391 (479)
Q Consensus 312 ~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 391 (479)
..++.+++.+|+++|.. +..+.++..++.+.+...... ...+.+.+++..++.+++.+..+
T Consensus 282 ~~~~~~~l~~r~gkk~~-----------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~l~g~~~~~~~ 342 (473)
T PRK10429 282 TLILFPRLVKSLSRRIL-----------WAGASIFPVLSCGVLLLMGLA--------APHNALLIVIAGILLNIGTALFW 342 (473)
T ss_pred HHHHHHHHHHHcCcHHH-----------HHHHHHHHHHHHHHHHHHhcc--------CchhHHHHHHHHHHHHHHHHHHH
Confidence 66777777777766643 455555544444333221000 01134445556677889999999
Q ss_pred hhhhhhhcccCC-------cchHHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 011716 392 GGMLEFFYSEAP-------HSMRSISTALSWCSTSMGYFLSSALVSITNLVS 436 (479)
Q Consensus 392 ~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~ 436 (479)
+..+++..|.+| ++..|...|...+...+|..+++.+.+.+....
T Consensus 343 ~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 343 VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 998999999876 556777899999999999999999999876544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=158.68 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=136.2
Q ss_pred hHHHHHHhhhhcCCChhh-HHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 7 AINFVAYFLKSMHYPAAE-SAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~-~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
.+++.+|+.+++|+|++| .|.+.+++..++.+..+++|+++|| +|.|+++..+.+..++.++++++++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~---------- 113 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT---------- 113 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH----------
Confidence 466788999999999999 9999999999999999999999999 8999999999999999999999987
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
++..+.+.|++.|+++|+.. +...++.+++|+++ |+++.++...+.++|.++++.+++++ ..+|||+-+
T Consensus 114 ------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE---R~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~ 182 (511)
T TIGR00806 114 ------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR---YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYS 182 (511)
T ss_pred ------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHH
Confidence 78899999999999999999 99999999999888 99999999999999999999999994 467998644
Q ss_pred ---HHHHHHHHHHHHHHHh
Q 011716 166 ---KISAVALGLALCIFTI 181 (479)
Q Consensus 166 ---~i~~~~~~~~~~~~~~ 181 (479)
+++.....+++++.++
T Consensus 183 ~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 183 TLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555555555554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=153.40 Aligned_cols=159 Identities=13% Similarity=0.013 Sum_probs=106.9
Q ss_pred hhHHHHHHhhhhcCCChhhHHHH--HHHHHHHHHHHhhhh-HhhhccccchhHHHHHHHHHHHH-HHHHHHHHhhhcccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIM--VNNFMGTSFLLTIFG-GFISDSFLTRFTTFILFCTIELL-GLILLTIQAQYSRLQ 81 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i--~~~~~~~~~~~~~~~-G~laDr~~Grk~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 81 (479)
..+.+|.|++ +.|.++++.|.. .+.......+.+|+. ++.+|| +||||..++.+.+... .....+...
T Consensus 20 ~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~~------ 91 (390)
T TIGR02718 20 AMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALVG------ 91 (390)
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcCC------
Confidence 3467777876 569999999997 355566666677666 668999 7999987666533222 222222110
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
........+.....+.++..+...+..+++..|..++++ ++...+....+..+|.++|+...+++.+++||
T Consensus 92 ------~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~---~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 92 ------PDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT---LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred ------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 000112233444555666677777777777777766555 66667777777889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 011716 162 NCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~ 181 (479)
|..|++.+++.++..+..+.
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888776655444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=162.75 Aligned_cols=359 Identities=13% Similarity=0.055 Sum_probs=202.0
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccc-----hhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLT-----RFTTFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~G-----rk~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
+...++.++.+++|+++++.+...+...+...+-.+ +|.++|| ++ ||+.++.+.++.. ...+..++.
T Consensus 44 ~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~l~~-~~~~~~l~~----- 115 (468)
T TIGR00788 44 MRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGLLGS-AILYGLLPG----- 115 (468)
T ss_pred hhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHHHHH-HHHHHhccc-----
Confidence 345667788889999999999999999998888666 9999999 77 7777777766653 122222221
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
.+.......+.+++.+++.+...++..++..|..+ ++++.++...++.+...++|.++|+.++|++.+.++
T Consensus 116 --------~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~ 186 (468)
T TIGR00788 116 --------KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL 186 (468)
T ss_pred --------ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01123344447888999999999999999999999 554445556677777788999999999999999899
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccce-ecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhh
Q 011716 161 WNCSFKISAVALGLALCIFTIGFPIYR-YKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKA 239 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
|+..|++.+.+.++..+.. ...++.+ ...|+..+... ..+ ..... +..+..
T Consensus 187 ~~~~f~~~a~l~ll~~~~~-~~~~E~~~~~~~~~~~~~~-~~~---~~~~~-----------------------~~~~~~ 238 (468)
T TIGR00788 187 TRILFLITAALLLLQLFVS-NLSKERRAFVRPRIGTYLE-MNM---ALLTL-----------------------GVLANV 238 (468)
T ss_pred cchHHHHHHHHHHHHHHHH-Hhcccccccccccccccch-hhh---hhhhh-----------------------hHHHHH
Confidence 9999998877766553332 2233311 11111100000 000 00000 000000
Q ss_pred cccCCCcchhhhhhhhhhhhhhH---HHHHHH-HHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhc
Q 011716 240 LFDDTITAAQVEETKTFLGLLPI---FASTIM-MNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPL 315 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 315 (479)
.++..+.+..++...+ .+.... +........+.+..+. ..++.-....+.......+..++...
T Consensus 239 -------~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~----~~lG~s~~~~G~~~~~~~v~~i~g~~- 306 (468)
T TIGR00788 239 -------KVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATT----QCLPGGPSFSGMSKVVGNLGSLCGVG- 306 (468)
T ss_pred -------HHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEc----ccCCCCcchhhhHHHHHHHHHHHHHH-
Confidence 0000011111111101 111111 1111111111111111 11111111122222222333333333
Q ss_pred cchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhh
Q 011716 316 YERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGML 395 (479)
Q Consensus 316 ~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 395 (479)
+..|+.+|. +..+.+..+.++..++.......... -. ..-+ ..+.+......++.+++.++......
T Consensus 307 ---~~~~~~~~~-------~~r~~l~~~~~l~~~~~~~~~~l~~~-~~-~~~g-i~~~~~~~~~~~l~~~~~g~~~~~~~ 373 (468)
T TIGR00788 307 ---GYDRFLKTF-------PYRLLFGVTTLLYTLSSLFDLILVKR-WN-LAFG-ISDEVFVLGDSIIAEVLAQLKFMPFL 373 (468)
T ss_pred ---HHHHHHhhC-------CHHHHHHHHHHHHHHHHhCceeeeec-cc-cccC-CCCeeeeeehhHHHHHHHHHHHccHH
Confidence 333333332 23444666666666555443211100 00 0000 01123344456788888888888899
Q ss_pred hhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011716 396 EFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNL 434 (479)
Q Consensus 396 ~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~ 434 (479)
.++.+.+|++.+|+..++.+...++|..+++.+.+.+..
T Consensus 374 ~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 374 VLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888763
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-16 Score=157.15 Aligned_cols=154 Identities=11% Similarity=0.022 Sum_probs=131.7
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHH
Q 011716 15 LKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAA 94 (479)
Q Consensus 15 ~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (479)
.+++++...+.+.+.++|.+++.++.+++|+|.|| +.-.+.+....+..++-.++..... +.+
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~----------------s~~ 135 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVH----------------SFP 135 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHh----------------hhH
Confidence 36888999999999999999999999999999999 8977777777777776666665555 788
Q ss_pred HHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh------hccchhhHHHHH
Q 011716 95 ILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE------ENRGWNCSFKIS 168 (479)
Q Consensus 95 ~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~------~~~gw~~~f~i~ 168 (479)
.+++.|++.|+.+++.+|+...+++.++.++| |+..+++++...++|.++|+++...+. ...|||+.|++.
T Consensus 136 ~~ialr~llGl~es~~wP~~~~~lg~wy~~~e---~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~ 212 (495)
T KOG2533|consen 136 GLIALRFLLGLFESGGWPGVVAILGNWYGKSE---RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIE 212 (495)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHhhcChhh---hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHH
Confidence 99999999999999999999999999999998 888899999999999999999988863 346999999999
Q ss_pred HHHHHHHHHHHHhhccccee
Q 011716 169 AVALGLALCIFTIGFPIYRY 188 (479)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ 188 (479)
+++.+...++.++..|..|.
T Consensus 213 G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 213 GVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHHHHHheEEEEecCChh
Confidence 98877666555555555444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-16 Score=147.07 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=117.9
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
....+.+.+++.++++..|++++-.++..++.+++++.|++.|| +|+|+-++.++.++++|..+..-++..
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~~-------- 101 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAASS-------- 101 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhhh--------
Confidence 34567788889999999999999999999999999999999999 899999999999999999888655322
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE 157 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~ 157 (479)
..+..++++.++.+.|.+...++.+++++...|+++..+| ++.......+|+++||.+++++..
T Consensus 102 -----~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~r---lnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 102 -----KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFR---LNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred -----hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHH---HHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2777899999999999999999999999999998773334 556666788999999999999876
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-16 Score=158.22 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=119.1
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
....++.+++|-+ ....|+..++.++.....++.|+++|. ||||.+++.+.++..+|++.++.++
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------- 129 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------- 129 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC-------------
Confidence 3445777888875 566889999999999999999999999 8999999999999999999999997
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHH
Q 011716 89 SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKIS 168 (479)
Q Consensus 89 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~ 168 (479)
+...++.+..+.|+|.|... .....++|..|.+. |.....+.....-+...+++.++..+..+.+|||.|++.
T Consensus 130 ---~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~---R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 130 ---NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW---RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred ---cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch---hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 77789999999999977776 45666899999877 666555555444445556777777776677999999988
Q ss_pred HHHHHHHHHH
Q 011716 169 AVALGLALCI 178 (479)
Q Consensus 169 ~~~~~~~~~~ 178 (479)
.+...++++.
T Consensus 203 ~i~~~i~~vl 212 (599)
T PF06609_consen 203 IIWSGIALVL 212 (599)
T ss_pred HHHHHHHHHH
Confidence 8775555443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-21 Score=194.98 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHH
Q 011716 23 AESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYA 102 (479)
Q Consensus 23 ~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 102 (479)
.+.++..+...++..++++++|+++|| +|||++++.+..+..+++++.++++. ..+...+.++|++
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~R~~ 111 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPS-------------YNNFWMLLIGRFL 111 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccc-------------ccccccccccccc
Confidence 356889999999999999999999999 89999999999999999999988841 1256688999999
Q ss_pred HHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHH
Q 011716 103 MATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE---NRGWNCSFKISAVALGLA 175 (479)
Q Consensus 103 ~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~---~~gw~~~f~i~~~~~~~~ 175 (479)
+|++.|+..+....++.|..|++. |+...+.......+|..++..++-.+.. ..+||..+.+..+..++.
T Consensus 112 ~G~~~g~~~~~~~~~~~E~~~~~~---R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~ 184 (451)
T PF00083_consen 112 IGFGIGGAYVVSPIYISEIAPPKH---RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV 184 (451)
T ss_pred cccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999988 8888888888888888888776544432 245999988777665443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=152.49 Aligned_cols=388 Identities=14% Similarity=0.068 Sum_probs=212.2
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHH
Q 011716 20 YPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTG 99 (479)
Q Consensus 20 ~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (479)
.++.-.+.+..+-.++..+++++.|+++|| +|||+++...+++..++++.+++....+ +...-..++.+.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~~---------~~~~~m~~L~~~ 150 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGTT---------SPLGVMMTLCFF 150 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCCC---------CCcchhhHHHHH
Confidence 566677888888899999999999999999 8999999999999999999777764222 111355688899
Q ss_pred HHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHH----HHHHHHHhhc-----------cchhhH
Q 011716 100 LYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVA----ATVMVWIEEN-----------RGWNCS 164 (479)
Q Consensus 100 ~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig----~~~~~~l~~~-----------~gw~~~ 164 (479)
|+++|+|.|+-+|.+.++.+|...++. |+...+.....++.|.+.| .++.+..... .=||..
T Consensus 151 R~~LGiGIGGDYPlSAtI~SE~an~~~---RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~ 227 (538)
T KOG0252|consen 151 RFLLGIGIGGDYPLSATIMSESANKKT---RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRII 227 (538)
T ss_pred HHHhhccccCCCcchHHHhhhhhhhcc---ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHH
Confidence 999999999999999999999888777 6555555444444444444 4443332211 138888
Q ss_pred HHHHHHHHHHHHHHHHhhcccceecCCCCCchhhH-HHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccC
Q 011716 165 FKISAVALGLALCIFTIGFPIYRYKRPSGSPITRI-FKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDD 243 (479)
Q Consensus 165 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
|.+..+..++.+. +-...| |....+.. .+..+++.++.+.+.+...+.....+.+...
T Consensus 228 ~glg~vpa~~~ly-~Rl~M~-------Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~------------- 286 (538)
T KOG0252|consen 228 FGLGAVPALLVLY-FRLKMP-------ETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPP------------- 286 (538)
T ss_pred HHHHHHHHHHHHH-hhhcCC-------cchhHHHHhhcCHhhhhhccccccccccchhhccccCCCC-------------
Confidence 8876554432221 111111 11111100 0111111111111111000000000000000
Q ss_pred CCcchhhhhhhhhh---hhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCC----ccc----Ccccccccc-cceeeh
Q 011716 244 TITAAQVEETKTFL---GLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINN----FKI----PTQSLTVFP-LTIMLA 311 (479)
Q Consensus 244 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~----~~~~~~~~~-~~~~~~ 311 (479)
+.+.-..+.+.+ ....++.++.-++..=...++.-+.+.... .+++. ... ..+..+.+. ....+.
T Consensus 287 --~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vP 363 (538)
T KOG0252|consen 287 --PSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVP 363 (538)
T ss_pred --cccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCC
Confidence 000000000000 112222222222222111111111111011 10000 000 001111111 112233
Q ss_pred hhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHH-HHHHHHHHHHHHHh
Q 011716 312 SIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWL-VWQYLLLGVSDMLT 390 (479)
Q Consensus 312 ~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~ 390 (479)
.-.+.-.++|+++|+.. .+.|++++++.++.++..-+. ..+.... +.--+...++...-
T Consensus 364 Gyw~tv~~id~iGRk~i-----------q~~GF~~~~i~~~~~~~~y~~---------~~~~~Gf~v~y~l~~ff~NFGP 423 (538)
T KOG0252|consen 364 GYWFTVYFIDIIGRKYI-----------QLMGFFIMTIFFFVIAGPYNQ---------LENTIGFVVLYSLTFFFGNFGP 423 (538)
T ss_pred ceeEEEEEeehhhhHHH-----------HHhhHHHHHHHHHHHcCCccc---------ccccCceeehHHHHHHHHhcCC
Confidence 44556677888888865 678888888777776653210 0111112 22223344556667
Q ss_pred hhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 011716 391 LGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFL 470 (479)
Q Consensus 391 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~ 470 (479)
+.+......|..|.+.||++-|++....-.|.+++........+-. .....+....|++++++++++.+
T Consensus 424 n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-----------yp~~~g~~~v~~i~~~~~~~gi~ 492 (538)
T KOG0252|consen 424 NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-----------YPPNIGVRNVFIILAGCMLLGIL 492 (538)
T ss_pred CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-----------CCccccchHHHHHHHHHHHHhHh
Confidence 7888889999999999999999999999999999988886654210 11133456678999999998887
Q ss_pred HHhhh
Q 011716 471 NYIYW 475 (479)
Q Consensus 471 ~~~~~ 475 (479)
+.+++
T Consensus 493 ~T~l~ 497 (538)
T KOG0252|consen 493 FTLLI 497 (538)
T ss_pred eeEEe
Confidence 76654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-15 Score=139.15 Aligned_cols=327 Identities=13% Similarity=0.105 Sum_probs=219.1
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
.++..-+++++|+|.+++|++.+.-.++..+.+++..+++.| +|.++.+..++++.++|..+=...
T Consensus 32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~------------- 97 (395)
T COG2807 32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG------------- 97 (395)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 445556678999999999999999999999999999999999 899999999999999998886554
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc-chhhHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR-GWNCSFK 166 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~-gw~~~f~ 166 (479)
+...++.+-.+.|.|.+......++.+-+.||++- +..++.|..+.++|+++++.+...+.++. |||....
T Consensus 98 ----~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~----~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 98 ----GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV----GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred ----cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch----hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 55678888899999999999999999999998654 88889999999999999999999999887 7998777
Q ss_pred HHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCc
Q 011716 167 ISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTIT 246 (479)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
+=+...++++++++....+ ++.++.+.. .+++. .-|-+
T Consensus 170 ~WAl~allAl~~WlPq~~r--~~~~~~~~~-----------~~~~~--------------------~vw~~--------- 207 (395)
T COG2807 170 FWALLALLALLIWLPQALR--EQAASIATK-----------LVSVR--------------------KVWRS--------- 207 (395)
T ss_pred HHHHHHHHHHHHHhhhccc--ccccccccc-----------ccccc--------------------ccccC---------
Confidence 6666666666655543211 101110000 00000 00000
Q ss_pred chhhhhhhhhhh-hhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHh
Q 011716 247 AAQVEETKTFLG-LLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFER 325 (479)
Q Consensus 247 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 325 (479)
+..+. .+-.-+....+++.+.+++..+.++. ++.+ +.+.+..+..+..+....+...+.+|..+
T Consensus 208 -------~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G--~sa~------~aG~llsl~~l~~~~~~ll~P~la~R~~n 272 (395)
T COG2807 208 -------PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG--LSAA------EAGSLLSLMQLAQLPTALLIPLLARRSKN 272 (395)
T ss_pred -------chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--CCHH------HhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11111 11122445567777777777776652 2222 33333333334444444444444443222
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCC-c
Q 011716 326 KISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAP-H 404 (479)
Q Consensus 326 r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P-~ 404 (479)
.........++..++...+.+.... ..++| .+++|+|.+..+|....++....+ +
T Consensus 273 ----------~r~~~~~~~~~~l~G~~G~~~~P~~----------~~~lw----~~llG~G~G~~F~laL~li~~rs~~a 328 (395)
T COG2807 273 ----------QRPLVVLALLLMLVGLVGLLLAPGQ----------LPILW----ALLLGLGQGGAFPLALTLILLRSSDA 328 (395)
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHhhhh----------HHHHH----HHHHhCccchHHHHHHHHHHhhcCCh
Confidence 2222444555555566555543211 12222 588899999999998888877666 4
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHHHhhhhcccc
Q 011716 405 SMRSISTALSWCSTSMGYFLSSALVSITNLVSG 437 (479)
Q Consensus 405 ~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~ 437 (479)
+..+.-+|+.+....+=...||.+.|.+.+.++
T Consensus 329 ~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 329 AIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred HHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 455566777777777777889999999886655
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.4e-15 Score=145.25 Aligned_cols=364 Identities=12% Similarity=0.027 Sum_probs=200.5
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHH--H-HHHHHHHhhhccccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELL--G-LILLTIQAQYSRLQP 82 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~ 82 (479)
..++.+.+++++.|+|++|+|.++++..+...+.+|+.|.++|| +|.||-++..+.+..+ + .+...+.+-+.
T Consensus 26 ~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~pll~---- 100 (412)
T PF01306_consen 26 FLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ---- 100 (412)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH----
T ss_pred HHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 35778899998899999999999999999999999999999999 7976655544333222 2 22222221000
Q ss_pred ccCCCCCchhH-HHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 83 AMNRRPSHTQA-AILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 83 ~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
.+. ...+++-...++...+..|...+++.+. +++.+-=+|-....+.+|.+++..++|.+.+ .+-
T Consensus 101 --------~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~-----sr~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p 166 (412)
T PF01306_consen 101 --------SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV-----SRRNGFEYGRARMWGSIGFAIASLLAGILFN-INP 166 (412)
T ss_dssp --------TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH-----HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred --------HHHHHHHHHHHHHHHHHHcccchHHHHHHHHH-----HHHhcCCcchHHHHhhHHHHHHHHHhheeee-eCc
Confidence 011 1112222223333444444444443332 2223334455677888999999999999986 466
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcc
Q 011716 162 NCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALF 241 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (479)
+..||+.....++..++.+..+++.+++.+..+.. .. +.++ .+..|..
T Consensus 167 ~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~--------------~~---------------~~~~-~~~~~~~-- 214 (412)
T PF01306_consen 167 NIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL--------------GA---------------KKDK-VSLKDVL-- 214 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS--------------SS----------------------HHHHH--
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc--------------cc---------------CCCC-CcHHHHH--
Confidence 77888776655544444444433221111100000 00 0000 0000000
Q ss_pred cCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccc-hhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhh
Q 011716 242 DDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQT-FSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSV 320 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 320 (479)
++-..++.+....+.......+-.+.|+.+ ++..+-...+.. +...+...++..+...+...+..+++
T Consensus 215 -------~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g----~~~~G~l~s~~v~~E~~~m~~~p~li 283 (412)
T PF01306_consen 215 -------SLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQG----NQMYGYLWSVQVFLEALMMFFSPWLI 283 (412)
T ss_dssp -------HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----hhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 001112222222222222222333333332 222111000000 00112233333444555555666676
Q ss_pred hhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 011716 321 HIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYS 400 (479)
Q Consensus 321 ~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 400 (479)
.|.+.|+. +.++.+++.+-....+.. ++++++.+.-.+.++-..+......-|+.+
T Consensus 284 ~rig~k~~-----------Lllag~i~~iRi~~~~~~-------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~ 339 (412)
T PF01306_consen 284 NRIGAKNL-----------LLLAGVIMAIRIIGSGFA-------------TNPWVISLIKLLHALEFPLLLVAAFKYITA 339 (412)
T ss_dssp HHH-HHHH-----------HHHHHHHHHHHHHHHHT---------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcChHhH-----------HHHHHHHHHHHHHHHhhh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654 777777888887777764 366677777799999999999999999999
Q ss_pred cCCcchHHHHHHHH-HHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011716 401 EAPHSMRSISTALS-WCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLN 471 (479)
Q Consensus 401 ~~P~~~rg~~~g~~-~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~ 471 (479)
..|++..+|...+. ++..++|..+.+.+.|.+. | +.+++..|++.+++.+...++
T Consensus 340 ~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly------------d----~~G~~~tylimg~iv~~~~li 395 (412)
T PF01306_consen 340 HFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY------------D----RIGFQHTYLIMGLIVLPFTLI 395 (412)
T ss_dssp HS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH------------H----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH------------h----hcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999885 6888899998888887754 1 445555677777776655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-14 Score=145.78 Aligned_cols=156 Identities=12% Similarity=-0.016 Sum_probs=121.5
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
+.....+++++|+|..|.+++.+.. .....+++++|+++|| +|||+++.++.+++.+++++++++.+-
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~---------- 114 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQE---------- 114 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcc----------
Confidence 3555677899999999999998774 3445678889999999 899999999999999999999987210
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHH-HHHHHHHHhhccchhhHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLV-AATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~i-g~~~~~~l~~~~gw~~~f~ 166 (479)
....+.+.+++.|++.|+|.+...+.....+.+++| ++ |+.+.++.....++|+++ +++..+++. .+|+..|+
T Consensus 115 ~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~---RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl 188 (591)
T PTZ00207 115 VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN---RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFF 188 (591)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHH
Confidence 001267788999999999999999999999999997 55 899999999999999975 555555544 35777777
Q ss_pred HHHHHHHHHHHHHHh
Q 011716 167 ISAVALGLALCIFTI 181 (479)
Q Consensus 167 i~~~~~~~~~~~~~~ 181 (479)
+.++..++..++.+.
T Consensus 189 ~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 189 FLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666665544444333
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=135.45 Aligned_cols=143 Identities=15% Similarity=0.062 Sum_probs=119.0
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+.+.+-++...|.+.-+..++......++.+++..+|.++|+ +||||.+......-.+.-.+.+.++
T Consensus 97 ~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~sp----------- 164 (528)
T KOG0253|consen 97 LSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASP----------- 164 (528)
T ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCC-----------
Confidence 3445556677889999999999999999999999999999999 8999999988887777777777665
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
++..+++.|.+.|+|.|+ .|...++-.|..|..+ |....-.. ....+|.++...+.-.+..+.|||+...
T Consensus 165 -----nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~---r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~ 234 (528)
T KOG0253|consen 165 -----NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH---RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLF 234 (528)
T ss_pred -----CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC---CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 677899999999999999 8999999999999888 55555444 5778999999888877788899998666
Q ss_pred HHHHH
Q 011716 167 ISAVA 171 (479)
Q Consensus 167 i~~~~ 171 (479)
...+.
T Consensus 235 ~~~~p 239 (528)
T KOG0253|consen 235 TSSTP 239 (528)
T ss_pred HHHhH
Confidence 55533
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=141.09 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=113.2
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcc---ccchhHHHHH-HHHHHHHHHHHHHHHhhhcccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDS---FLTRFTTFIL-FCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr---~~Grk~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
+..++..|+++.+|+++..+|.+..+.-+.-++.-|+.|+++|| .+||||..+. +....+++.+++...+ .
T Consensus 28 ~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p---~-- 102 (460)
T PRK11462 28 VMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP---D-- 102 (460)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC---C--
Confidence 44578888899999999999999999999999999999999996 2688766654 5566666665554332 0
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc---
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN--- 158 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~--- 158 (479)
. +.......+.+.-.+..++.........++..|..++. ++|.+..++.....++|..+++.+...+.+.
T Consensus 103 ----~-s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~--~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~ 175 (460)
T PRK11462 103 ----L-SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP--TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG 175 (460)
T ss_pred ----C-CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 01112334555555667888888888889999988753 3488999998888999888887776554432
Q ss_pred ----cchhhHHHHHHHHHHHHHHH
Q 011716 159 ----RGWNCSFKISAVALGLALCI 178 (479)
Q Consensus 159 ----~gw~~~f~i~~~~~~~~~~~ 178 (479)
.+|+....+.+++.+++..+
T Consensus 176 ~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 176 DNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHH
Confidence 24665555544444444333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=142.15 Aligned_cols=398 Identities=10% Similarity=0.002 Sum_probs=241.9
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
.+-..+.++++.+.++++|+.+.......+..|+.+.+.|| ||.|++.+.+.++..+|.++.++++
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~~lssF~~------------- 132 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGLLLSSFAT------------- 132 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 44556678999999999999999999999999999999999 8999999999999999999999997
Q ss_pred CchhHHHHHH-HHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHH
Q 011716 89 SHTQAAILYT-GLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKI 167 (479)
Q Consensus 89 ~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i 167 (479)
+++.+++ .=++.|+|.|..+.....++..+|++ + |+.+.++...+..+|..+=|.+..++.+.+|||..+++
T Consensus 133 ---~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k---R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~ 205 (509)
T KOG2504|consen 133 ---SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K---RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLI 205 (509)
T ss_pred ---hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H---HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHH
Confidence 5555555 34568899999999999999977753 3 78888888888899999889999999999999999987
Q ss_pred HHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccC-CC-CCC---CCCcchhhhhhccc
Q 011716 168 SAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIAS-PG-ATR---SNDMFRVLDKALFD 242 (479)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~~~ 242 (479)
-+.+.+-.+......+|..+...|+ ..++... ..+..+...........+ ++ ... .++ ....+.....
T Consensus 206 ~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (509)
T KOG2504|consen 206 FGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN----SAASVESTPKPVELRISERDSGLKKLSLSNL-ATLKRGPDKW 278 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc----ccccccccccccccccccCCCCCCcccccch-hhhhhCCccc
Confidence 7766655555555555533322222 0000000 000000000000000000 00 000 000 0000000000
Q ss_pred CCCcchhhhh--hhhhhhhhhH---HHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccc
Q 011716 243 DTITAAQVEE--TKTFLGLLPI---FASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYE 317 (479)
Q Consensus 243 ~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 317 (479)
.......... ...+++...+ ..........+.....++..+. . +.+......+....+..+..+++-++.+
T Consensus 279 ~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~---~-~~g~~~~~aa~l~Siigi~~i~gRi~~G 354 (509)
T KOG2504|consen 279 RNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYA---K-SLGLSSNDAAFLLSIIGVSDIIGRIILG 354 (509)
T ss_pred cccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH---h-hcCCChhhhHHHHHHHHHhhhhhhhhhh
Confidence 0000000000 0122221111 1111111111111111122221 1 1111122334444445566666667777
Q ss_pred hhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011716 318 RSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEF 397 (479)
Q Consensus 318 ~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 397 (479)
.+.|+-..+ ......++++..+++....... .+.+.++...++.|+..+.........
T Consensus 355 ~laD~~~~~---------~~~~~~~~ll~~gl~~~~~p~~-------------~~~~~l~~~~~~fG~~~g~~~~l~~~i 412 (509)
T KOG2504|consen 355 LLADKPGIR---------ALVLFLLTLLIAGLARLFLPFA-------------TTYVGLIVFSILFGFCVGSFSSLTPVI 412 (509)
T ss_pred hhcCccccc---------hHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654421 2333566666666666444442 355667777789999999998888889
Q ss_pred hcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 398 FYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 398 ~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
..+..+.+.-+.+.|+..+...++..+|+.+.+.+.+.++ +++..|+.++...+++...+++.
T Consensus 413 ~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 413 LVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred HHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999986653332 24455777777777766555543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=131.58 Aligned_cols=378 Identities=11% Similarity=0.146 Sum_probs=219.1
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
-.-+..+...+.+++.++..++.+.|..-..+.++++|++.||.+|-|..-++-+.+..+|-++.+......
T Consensus 63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~-------- 134 (459)
T KOG4686|consen 63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISH-------- 134 (459)
T ss_pred chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHH--------
Confidence 344567778888999999999999999999999999999999999988766666666777777766543211
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
..+.+..+|++.|+|.-....+.+.+...+|..+| ..-+++.+....-+|...--.+.+++.+..+--.+ .
T Consensus 135 -----aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE---Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~-~ 205 (459)
T KOG4686|consen 135 -----AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE---LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFP-G 205 (459)
T ss_pred -----HHHHHHhhheeeccCchhhhhhhcceeEEEecCcc---ccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcc-c
Confidence 67789999999999998888999999999999998 99999998888888888887788888765441100 0
Q ss_pred HHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCc
Q 011716 167 ISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTIT 246 (479)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
..-....+.+++-....+. ...-.....+.++++ ++.++.++-..+++
T Consensus 206 ~ghT~LG~~l~~~~~tc~~------------slical~lg~~D~rA-----erilh~e~g~~Ge~--------------- 253 (459)
T KOG4686|consen 206 VGHTLLGLWLCFEVKTCKQ------------SLICALSLGLSDDRA-----ERILHLEEGFLGEE--------------- 253 (459)
T ss_pred chHHHHHHHHHHHHHHHHH------------HHHHHHHhhhhhhHH-----HHHHhhhcCcccCC---------------
Confidence 0000000111110000000 000000000000000 00000000000000
Q ss_pred chhhhhhhhh-hhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHh
Q 011716 247 AAQVEETKTF-LGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFER 325 (479)
Q Consensus 247 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 325 (479)
.+..++++. .....+...+..++.......+. .+.-.....+-...+.+.+.+..-....+.+|+.+.++|+.++
T Consensus 254 -pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~l---g~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~ 329 (459)
T KOG4686|consen 254 -PKLTDVNTFYPPFWVLVIICVLYYVAWFPFITL---GPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGF 329 (459)
T ss_pred -cccccccccCccHHHHHHHHHHHHHHHHHHhhh---hHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcc
Confidence 001111111 11122333333333332222111 1111111111112222222222234456778899999999988
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcc
Q 011716 326 KISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHS 405 (479)
Q Consensus 326 r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 405 (479)
+.. .+..+.+...++=..+.+ +.+--...+.++|..+.+.....+-.+....|++
T Consensus 330 n~~----------wv~~a~~~tl~~H~~l~F---------------t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~ 384 (459)
T KOG4686|consen 330 NLW----------WVASACILTLLGHSGLFF---------------TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE 384 (459)
T ss_pred eeh----------hHHHHHHHHHHHhhhHHh---------------hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence 742 123333332222222222 2222345678889998888888999999999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 011716 406 MRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIY 474 (479)
Q Consensus 406 ~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~ 474 (479)
.-||+.|..+.++++|-++.+.+.+.+.+-.+ +.-....+|..+..+++.++.+.+.
T Consensus 385 qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g------------~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 385 QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG------------SYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred HhcchHHHHHHHHhhhhhHHhhhhheeecCCC------------chhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988752111 1122344555666666655544433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-12 Score=128.23 Aligned_cols=357 Identities=15% Similarity=0.055 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHH-HHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHH
Q 011716 25 SAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIEL-LGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAM 103 (479)
Q Consensus 25 ~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 103 (479)
.+...++..+...+..|+-|.++|+ -|+||-++....+.. +.+.++.+.+ ++ ++....+..++.
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~------------~~--~~~~~~~l~iia 136 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVS------------PG--QWWLALVLFIIA 136 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhC------------cc--hHHHHHHHHHHH
Confidence 4567778888899999999999999 676666665544444 4555555542 11 333333444455
Q ss_pred HHhccccccchhhhhcccCCCcch--hh---------------------hhhhhhHHHHHHhhhHHHHHHHHHHHhhc--
Q 011716 104 ATGVGGVKAALPAHGADQLDHSNR--RL---------------------ISAFFNWFFFSLCAGGLVAATVMVWIEEN-- 158 (479)
Q Consensus 104 g~g~g~~~~~~~~~i~~~~~~~~~--~~---------------------~~~~~~~~~~~~~ig~~ig~~~~~~l~~~-- 158 (479)
.++.+......++++.|..+++++ +. |++..+.-+...++|+++.-.+.-.+...
T Consensus 137 ~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~ 216 (477)
T PF11700_consen 137 NVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPG 216 (477)
T ss_pred HHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 577788888999999999988772 11 17777887778888888876665444321
Q ss_pred ------cchhhHHHHHHHHHHHHHHHHHhhccccee--cCCCC-CchhhHHHHHHHHHhhccccccchhhhccCCCCCCC
Q 011716 159 ------RGWNCSFKISAVALGLALCIFTIGFPIYRY--KRPSG-SPITRIFKVIASAIRNRKASRSEMTEQIASPGATRS 229 (479)
Q Consensus 159 ------~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479)
.+.|..+.+.++-.++..+-.++..|+.+. ..|+. +....-.+.+++.+|+.
T Consensus 217 ~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~------------------- 277 (477)
T PF11700_consen 217 STASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEI------------------- 277 (477)
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH-------------------
Confidence 234666666555533332223333333222 11111 11111112222222111
Q ss_pred CCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhccc---chhhhhhhhcccCCCCcccCccccccccc
Q 011716 230 NDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQ---TFSVQQGIIMNRTINNFKIPTQSLTVFPL 306 (479)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 306 (479)
.+.|...+ +++...++.-..+... ..+..+..+++.. +...+..+..
T Consensus 278 ---------------------~~~~~~~~---fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~------~l~~~~l~~~ 327 (477)
T PF11700_consen 278 ---------------------RKLRQLFL---FLIAYFLYSDGVNTIISFAGIYATEVLGMSTT------QLIVFGLVVQ 327 (477)
T ss_pred ---------------------HhChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHH------HHHHHHHHHH
Confidence 11111211 1111111111111111 1111111111111 1112222223
Q ss_pred ceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHH
Q 011716 307 TIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVS 386 (479)
Q Consensus 307 ~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (479)
++.++...+.+++.+|++.| +.+.+..++++..+ ....+....... .....+.+.+.+.-++.|+.
T Consensus 328 i~a~~Ga~~~g~l~~r~g~k---------~~~~l~~~l~~~~~-i~~~g~~G~~~~----~~g~~~~~~f~~~a~~~G~~ 393 (477)
T PF11700_consen 328 IVAIIGALLFGWLQDRFGPK---------TKRTLLISLILWII-IPLYGLFGFWPS----FFGLKSPWEFWVLAVLIGLF 393 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCc---------hhHHHHHHHHHHHH-HHHHHHHHhhhc----ccCcccHHHHHHHHHHHHHH
Confidence 34444555555555554444 12334444444322 222222210000 00011333344455788999
Q ss_pred HHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHH
Q 011716 387 DMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNF 466 (479)
Q Consensus 387 ~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l 466 (479)
.+...+..-++..++.|+++.+...|++.+.....+.+||.+.+.+.+.++ +.++.+....++.+
T Consensus 394 ~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~~r~g~~~l~~lf~ 458 (477)
T PF11700_consen 394 MGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------SQRYGFLFLLVLFL 458 (477)
T ss_pred hhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875442 23444666666666
Q ss_pred HHHHHHhh
Q 011716 467 INFLNYIY 474 (479)
Q Consensus 467 ~~~~~~~~ 474 (479)
+++++...
T Consensus 459 ~gl~ll~~ 466 (477)
T PF11700_consen 459 IGLILLFF 466 (477)
T ss_pred HHHHHHhh
Confidence 66655543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=120.54 Aligned_cols=376 Identities=15% Similarity=0.078 Sum_probs=215.2
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccc-----hhHHHHH-HHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 14 FLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLT-----RFTTFIL-FCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 14 l~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~G-----rk~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
+..++++...-.+..++...+... .++..|+.||+ .+ ||..+++ +..++..+..+...+...-.-..+-+..
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 446789988888888887766554 68999999999 57 6766555 4555566666655553111000001111
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH--
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF-- 165 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f-- 165 (479)
+.........+...+.|+|.+...++..++++|..|+++ |+++.++.+...-+|.+++..+.+.+.+.++-.-..
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~---R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v 160 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER---RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV 160 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 122233345566778999999999999999999999998 999999999999999999999999998877643222
Q ss_pred --HHHHHHHHHHHHHHHhhcccceecC-CCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhccc
Q 011716 166 --KISAVALGLALCIFTIGFPIYRYKR-PSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFD 242 (479)
Q Consensus 166 --~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
.++.+...+.++..|-..++.++.. .++++. .++.+...
T Consensus 161 ~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~------------------------------------~~f~~a~~-- 202 (403)
T PF03209_consen 161 IQGVALIALLLNLIALWGQEPRRSRRAAAAERPR------------------------------------PPFREAWR-- 202 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccCCCCCC------------------------------------ccHHHHHH--
Confidence 2233333333333333333222111 000000 00111000
Q ss_pred CCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCC----CcccC-cccccccccceeehhhhccc
Q 011716 243 DTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTIN----NFKIP-TQSLTVFPLTIMLASIPLYE 317 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~-~~~~~~~~~~~~~~~~~l~~ 317 (479)
++...++..++........ ...+ .++ -.-+.++ +.++. ...+...-....++...+.+
T Consensus 203 ------~~~~~~~a~~f~~fl~l~t--~a~~-------~QD--~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g 265 (403)
T PF03209_consen 203 ------QVWASPQARRFFVFLFLGT--LAFF-------MQD--VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAG 265 (403)
T ss_pred ------HHHhCCChhHHHHHHHHHH--HHHH-------hhH--HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011111111111111 1111 111 0111111 12211 11222222334444444445
Q ss_pred hhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011716 318 RSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEF 397 (479)
Q Consensus 318 ~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 397 (479)
++..| |. .+.+....|.....+++........ .-+.+.+....+++|++.+.......+.
T Consensus 266 ~~l~~---~~-------~~~~~a~~G~~~~~~~f~lii~a~~----------~~~~~~~~~~~~l~G~g~G~f~vgals~ 325 (403)
T PF03209_consen 266 FLLSR---RL-------GKKRTAALGCLLGALAFALIILAGP----------LGSPWLFRPGVFLLGLGNGLFTVGALSL 325 (403)
T ss_pred HHhcC---CC-------CchHHHHHHHHHHHHHHHHHHHHHh----------cccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44332 21 1222244566666555555444321 1245677888999999999999999999
Q ss_pred hcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 398 FYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 398 ~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
..+.+++++.|+.+|.|...+.++..++..+.+.+.+.... +.. +-....+...|.+=++..++++.+...+
T Consensus 326 mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~----~~~--~~~~~aY~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 326 MMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA----LFG--NSPALAYGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred HHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcc--CCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988765532 211 0123445666777777766665554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-11 Score=122.33 Aligned_cols=346 Identities=13% Similarity=0.106 Sum_probs=211.9
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccc---cchhH-HHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSF---LTRFT-TFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~---~Grk~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
+..++..|.++.+|+++..+|.++.+.-+.-++.-|+.|.+.||. +||+| -++.+.+.+++...++-.++..
T Consensus 31 ~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~---- 106 (467)
T COG2211 31 VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDF---- 106 (467)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCc----
Confidence 556788888999999999999999999999999999999999962 45544 5555667888888777766411
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh----
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE---- 157 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~---- 157 (479)
....+....++.-.+.+++...+.....++.+++.++. +||.+..++.....++|..+...+.+.+..
T Consensus 107 ------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~--~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~ 178 (467)
T COG2211 107 ------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP--QERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG 178 (467)
T ss_pred ------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11235556666777888999999999999999988753 358999999888899987776665555442
Q ss_pred ---ccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcch
Q 011716 158 ---NRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFR 234 (479)
Q Consensus 158 ---~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (479)
..||+..-.+-++...+..+..+...+| +..+.++.++ +.+ .+
T Consensus 179 ~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~E---R~~~~~~~~~------------------------------~~~-~~ 224 (467)
T COG2211 179 GDKALGYQGTALVLGVIGVILLLFCFFNVKE---RVVETQPTKT------------------------------GVK-LK 224 (467)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhc---ccCccccCcc------------------------------ccc-cc
Confidence 2356554444444433333333332222 1111111000 000 01
Q ss_pred hhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccc---hhhhhhhhcccCCCCcccCcccccccccceeeh
Q 011716 235 VLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQT---FSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLA 311 (479)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 311 (479)
+.|... .....|.... +.......+...+...+ ++.++. ++.. ...+...........++
T Consensus 225 ~~~~~~--------~~~~Nrp~~~---~l~~~l~~~~~~~i~~s~~~yy~~y~--lg~~----~l~~~~~~~~~~~~~l~ 287 (467)
T COG2211 225 LKDSFL--------LIFKNRPLLL---LLLMNLLLFIAFNIRGSIMVYYVTYV--LGDP----ELFAYLLLLASGAGLLI 287 (467)
T ss_pred HHHHHH--------HHHccchHHH---HHHHHHHHHHHHHHHhhhhheeEEEE--cCCh----HHHHHHHHHHHHHHHHH
Confidence 111000 0000111111 11122222222222222 222221 1111 11222222222333344
Q ss_pred hhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhh
Q 011716 312 SIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTL 391 (479)
Q Consensus 312 ~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 391 (479)
..++..++..|+++|.. ...+.++..++.+.+.+.. ..+....+...++.++|.+..+
T Consensus 288 ~~~~~p~L~~~~gkk~~-----------~~~~~~~~~i~~~~~~f~~-----------~~~~~l~~~~~~i~~~g~~~~~ 345 (467)
T COG2211 288 GLILWPRLVKKFGKKKL-----------FLIGLLLLAVGYLLLYFTP-----------AGSVVLIVVALIIAGVGTGIAN 345 (467)
T ss_pred HHHhHHHHHHHhchHHH-----------HHHHHHHHHHHHHHHHhhc-----------CcchHHHHHHHHHHHHHhhccc
Confidence 45666677666666643 7778888888777777653 1245666667788899999999
Q ss_pred hhhhhhhcccCC-------cchHHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 011716 392 GGMLEFFYSEAP-------HSMRSISTALSWCSTSMGYFLSSALVSITNLVS 436 (479)
Q Consensus 392 ~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~ 436 (479)
+..++++.+... ++..|...|.+.+.+-+|..++..+.+++....
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998888654 566788899999999999999999999876444
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-13 Score=112.71 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHhcc
Q 011716 29 VNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVG 108 (479)
Q Consensus 29 ~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g 108 (479)
.+.+.++..++.++.|+++|| +|||+.+..+..+..++.++..... +...+.+.+++.|++.+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~g~~~~ 66 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS----------------NITVLIIARFLQGFGAA 66 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc----------------cHHHHHHHHHHHHHHHH
Confidence 345567888899999999999 8999999999999888888777664 56677888999999999
Q ss_pred ccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHh
Q 011716 109 GVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 109 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 181 (479)
...+..++++.|.+|+++ |++..+......++|..++|.+.+++.+..+|++.|++.....++..+....
T Consensus 67 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 67 FALVAGAALIADIYPPEE---RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHhHHHHHHHHCChhh---hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999888 8999999999999999999999999998889999998877666655554444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=130.64 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=130.9
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
+.+..+++.|+.+ .|. .+.+...+.+.++..++.++.|++.|| +||||.+..+..+..++..+....+
T Consensus 233 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-------- 300 (399)
T PRK05122 233 GTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP-------- 300 (399)
T ss_pred HHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 3455667777754 465 345667778888889999999999999 8999999988888888877776654
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+...+.+.+++.|++.+...|.......|..|+++ |+++.++++...++|..+++.+.|++.++.||+.
T Consensus 301 --------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 369 (399)
T PRK05122 301 --------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN---RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPS 369 (399)
T ss_pred --------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 44566677889999999988888888889888777 9999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccceec
Q 011716 164 SFKISAVALGLALCIFTIGFPIYRYK 189 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~~~~~~~~~ 189 (479)
.|++.+++.+++++..+...++.+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 370 IFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccc
Confidence 99988877777766655554443433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.5e-12 Score=126.62 Aligned_cols=155 Identities=13% Similarity=0.117 Sum_probs=120.9
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
....+|.|+++++|+++.+++++.+....+..++.+++|+++|| +|||+.+..+.....+........+
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---------- 303 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMAH---------- 303 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 34568889988999999999999888778888899999999999 8999988877655554443333332
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
+...+.+.+++.+++.|...+..+.+..|.+|+ + ++++.+.+....++|..+||.++|.+.+++||+..|
T Consensus 304 ------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~---~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~ 373 (393)
T PRK15011 304 ------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q---AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVF 373 (393)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C---cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444556677777777777666777778888874 4 678888887888999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 011716 166 KISAVALGLALCIFTI 181 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~ 181 (479)
++..++.+++++..+.
T Consensus 374 ~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 374 WFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9877776666555443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-11 Score=115.61 Aligned_cols=367 Identities=14% Similarity=0.053 Sum_probs=195.2
Q ss_pred ehhHHHHHHhhhhcCC---Chh----hHHHHHHHHHHHHHHHhhhhHhhhccccchhHHH-HHHHHHHHHHHHHHHHHhh
Q 011716 5 SNAINFVAYFLKSMHY---PAA----ESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTF-ILFCTIELLGLILLTIQAQ 76 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~---~~~----~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~-~~~~~~~~~~~~l~~~~~~ 76 (479)
.++.++|+|+++..+- ++. -.+...++..+..++..|+-|.++|. .|+||.. -....+-.+..+++.+++
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~- 110 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIP- 110 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhC-
Confidence 4567889999987665 433 34556667778888999999999999 5755544 444444445666666663
Q ss_pred hcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHH--
Q 011716 77 YSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVW-- 154 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~-- 154 (479)
+...+....+...+..++..+.....+++..|..++++ .++..+.-+....+|+.+.-.+.-.
T Consensus 111 ------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~---~~riS~lg~~~gylgs~i~li~~~~~~ 175 (438)
T COG2270 111 ------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN---MGRISGLGWALGYLGSVILLIFVVLGF 175 (438)
T ss_pred ------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc---cCcccccccccccccchHHHHHHHHHH
Confidence 11356666677788889999999999999999998877 5555555555666777665443211
Q ss_pred Hhh-ccc---------------hhhHHHHHHHHHHHHHHHHHhhcccceecC-CCCCchhhHHHHHHHHHhhccccccch
Q 011716 155 IEE-NRG---------------WNCSFKISAVALGLALCIFTIGFPIYRYKR-PSGSPITRIFKVIASAIRNRKASRSEM 217 (479)
Q Consensus 155 l~~-~~g---------------w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (479)
+.. ..+ =|..+.+.++=.++..+=.++..++.++.. |..+...+-.+-+++.+++.+
T Consensus 176 ~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~------ 249 (438)
T COG2270 176 ALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIR------ 249 (438)
T ss_pred hcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHh------
Confidence 111 112 233333333222221111222222222111 111121111111111111110
Q ss_pred hhhccCCCCCCCCCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcc-cchhhhhhhhcccCCCCccc
Q 011716 218 TEQIASPGATRSNDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQL-QTFSVQQGIIMNRTINNFKI 296 (479)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 296 (479)
..+.+.+ ++.. ++.+... .+....-...-...++-...
T Consensus 250 ----------------------------------~~~~i~~----FLiA---~~~~~DGv~til~~~~~fg~~~~gls~~ 288 (438)
T COG2270 250 ----------------------------------GRKNLVL----FLIA---RFFYIDGVNTILAMGGVFGAADLGLSST 288 (438)
T ss_pred ----------------------------------cccchHH----HHHH---HHHHHhhHHHHHHHHHHHHHHHcCccHH
Confidence 0111111 1100 0111000 00000000000000000011
Q ss_pred CcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHH
Q 011716 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWL 376 (479)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (479)
+-..+.....+..+++..+.+++-+|++.| +.+..++++..+..+...+.+. +.. +
T Consensus 289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----------~vl~~~lvi~~~~~~~~~~~~~----------~~~---f 344 (438)
T COG2270 289 ELLLIGIALSVVAALGAIIAGFLDERFGSK-----------PVLMIGLVILSIAALYLIFLEG----------ELD---F 344 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------eeehHHHHHHHHHHHHHHHccc----------cHH---H
Confidence 111222222233344444444444444333 3366777776665555554321 112 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHH
Q 011716 377 VWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDL 456 (479)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
...-++.+...+.....+=++..+.+|+++.++..|++++.....+.+||.+++.+.+.+++. +.
T Consensus 345 ~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~---------------r~ 409 (438)
T COG2270 345 WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS---------------RA 409 (438)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch---------------hh
Confidence 223366778888888999999999999999999999999999999999999999998766531 33
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011716 457 FYALLCILNFINFLNYIY 474 (479)
Q Consensus 457 ~f~~~~~~~l~~~~~~~~ 474 (479)
.+...+++.+++.+.++.
T Consensus 410 g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 410 GVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred HHHHHHHHHHhhHhhEEe
Confidence 355555666666555443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-11 Score=116.74 Aligned_cols=262 Identities=11% Similarity=0.053 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc-------------
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN------------- 158 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~------------- 158 (479)
++..+.++.++.|.|.+..+++.++++++..|+++ +.+.+++......+|..+||.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~---~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET---AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch---HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 67789999999999999999999999999999888 77778888889999999999999987731
Q ss_pred ---cchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchh
Q 011716 159 ---RGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRV 235 (479)
Q Consensus 159 ---~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (479)
..|+++|++.+....+..+.+... + .++.++++++. ..+ + + ..++
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~-~-~p~~~~~~~~~------------~~~-~-~------------~~~~---- 133 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFL-P-LPELQEADVAR------------VSS-G-D------------TTQK---- 133 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-c-CCCCCcccccc------------ccc-c-c------------ccch----
Confidence 468899885544433333322221 1 11111111000 000 0 0 0000
Q ss_pred hhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHH-hhhcccchhhhhhhhcccCCCCc-ccCcccccccccceeehhh
Q 011716 236 LDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNC-CLAQLQTFSVQQGIIMNRTINNF-KIPTQSLTVFPLTIMLASI 313 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 313 (479)
++....++.. +.+....++. .......+...+.. +.+..+. ....+.....+....++..
T Consensus 134 ------------~~~~~~~~~~----l~~~~~f~yvg~e~~~~~w~~~yl~--~~~~~g~s~~~a~~~~s~~~~~~~iGr 195 (310)
T TIGR01272 134 ------------TSAFQFTHLV----LGALGIFVYVGAEVSAGSFLVNFLS--DPHALGLPEDQAAHFTAYTWGGAMVGR 195 (310)
T ss_pred ------------hhHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--hcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000011111 1111111222 11122222222211 1110011 1122333344445555666
Q ss_pred hccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhh
Q 011716 314 PLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGG 393 (479)
Q Consensus 314 ~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 393 (479)
.+.+++.+|+++|+. +..+.++..+..++.... +.........+.+++.+...|+
T Consensus 196 ~~~~~l~~r~g~~~~-----------l~~~~~l~~~~~~l~~~~--------------~~~~~~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 196 FIGSAVMPMISQGRY-----------LAFNAFLAVLLSIGAALT--------------HGYVAMWFVLALGLFNSIMFPT 250 (310)
T ss_pred HHHHHHHHHhCHHHH-----------HHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 666667666655432 455555555544333321 1112233556788999999999
Q ss_pred hhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 394 MLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 394 ~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
..+...+..|++ .+++.++. ....+|+.+.|.+.|.+.
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la 288 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA 288 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence 999999988865 56777775 556789999999998775
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=124.93 Aligned_cols=160 Identities=11% Similarity=0.061 Sum_probs=127.7
Q ss_pred HHHHHHhhhhcCCCh--------hhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011716 8 INFVAYFLKSMHYPA--------AESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSR 79 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~--------~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (479)
...+.|++ +.|.++ ++.+...+...+...++.++.|+++|| +|||+++..+.++..++..+.....
T Consensus 229 ~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~---- 302 (418)
T TIGR00889 229 IFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGD---- 302 (418)
T ss_pred HhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcC----
Confidence 44456665 455443 567899999999999999999999999 8999999999998888877666532
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHH-HHHhhhHHHHHHHHHHHhhc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFF-FSLCAGGLVAATVMVWIEEN 158 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ig~~ig~~~~~~l~~~ 158 (479)
+...+...+++.+++.|++.+...+....++.|++|+++ |+++.++.+ ....+|.++||.++|++.++
T Consensus 303 --------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~---~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 303 --------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI---RASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred --------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111134566778899999999999999999999999888 999999986 56789999999999999987
Q ss_pred ------cchhhHHHHHHHHHHHHHHHHHhhcc
Q 011716 159 ------RGWNCSFKISAVALGLALCIFTIGFP 184 (479)
Q Consensus 159 ------~gw~~~f~i~~~~~~~~~~~~~~~~~ 184 (479)
+||+.+|.+.++..+++.+..+...+
T Consensus 372 ~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 372 MFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred hccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46999999887776666665555554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=126.48 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=118.3
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHH-HHHhhhccc
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILL-TIQAQYSRL 80 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~-~~~~~~~~~ 80 (479)
.+|++...+|.|+++.+|++..+.++......++..++.+++|+++|| +|||+++..+..+..++...+ ....+
T Consensus 265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~---- 339 (490)
T PRK10642 265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFILINS---- 339 (490)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 467788899999988899999888888888889999999999999999 899999888776555443322 22210
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc-
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR- 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~- 159 (479)
.+...+++++++.+++.+...+...+++.|.+|++. |+++.+..+....+++.++|.+.+++.+..
T Consensus 340 ----------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~---Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~ 406 (490)
T PRK10642 340 ----------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI---RYSALAAAFNISVLVAGLTPTLAAWLVESTQ 406 (490)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 034566778888888777777777888889999988 999898755556677788999999988754
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 011716 160 GWNCSFKISAVALGLALCI 178 (479)
Q Consensus 160 gw~~~f~i~~~~~~~~~~~ 178 (479)
+|+.++++..+..+++++.
T Consensus 407 ~~~~~~~~~~~~~~i~~~~ 425 (490)
T PRK10642 407 NLMMPAYYLMVVAVIGLIT 425 (490)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 4666665444444444333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=121.39 Aligned_cols=156 Identities=21% Similarity=0.260 Sum_probs=138.7
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhH-HHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFT-TFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
.......+.++.+.+|.++.+.+.......++..++.++.|++.|| +|||+ .+..+..+..++..+....+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~------- 263 (352)
T cd06174 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLALAP------- 263 (352)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3455677888887789999999999999999999999999999999 89999 99999999999988887764
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchh
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWN 162 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~ 162 (479)
+.....+..++.+++.+...+...+++.|..|+++ |++.++......++|..+++.+.+.+.+..+|+
T Consensus 264 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~ 331 (352)
T cd06174 264 ---------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA---RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331 (352)
T ss_pred ---------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 45677788999999999999999999999999887 999999999999999999999999999889999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 011716 163 CSFKISAVALGLALCIF 179 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~ 179 (479)
..|.+.++...++.+..
T Consensus 332 ~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 332 GVFLILAALALLAALLL 348 (352)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99998887766665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=122.19 Aligned_cols=159 Identities=10% Similarity=-0.012 Sum_probs=125.4
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHH-HHHhhhccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILL-TIQAQYSRLQP 82 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 82 (479)
++....+++|+.++.|.++.+++++.+.+.++..+++++.|+++|| +|||++. .+..+..++..+. ...+
T Consensus 222 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l~~~~~------- 292 (390)
T PRK03545 222 FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLLLPAAN------- 292 (390)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHHHHHhc-------
Confidence 3445667888888899999999999999999999999999999999 7988754 4444444444332 2222
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchh
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWN 162 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~ 162 (479)
+...+.+..++.|++.+...+...+.+.|..| ++ |+++.+.+....++|..+||.++|++.+++|++
T Consensus 293 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~---~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~ 359 (390)
T PRK03545 293 ---------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA---TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS 359 (390)
T ss_pred ---------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 45566677788888888877888888888765 45 788899888889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc
Q 011716 163 CSFKISAVALGLALCIFTIGFP 184 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~~~~~~ 184 (479)
..|++.+.+.+++++..+...+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 360 SIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 9999988888777777666554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=121.85 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=123.6
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
...++.|+++++|.++.+.+++.+........+.+++|++.|| +|||+++..+..+..+...+....+
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~----------- 286 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADN----------- 286 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4456788888999999999998888777788889999999999 8999999887766555544444443
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
+.+.+.+.+.+.|++.+...+....+..|..|+ + ++++.+.++...++|..++|.++|++.+..||+..|+
T Consensus 287 -----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~ 357 (375)
T TIGR00899 287 -----SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R---AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYW 357 (375)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 455666778888888888888888888898775 3 4588899888999999999999999999899999999
Q ss_pred HHHHHHHHHHHHHH
Q 011716 167 ISAVALGLALCIFT 180 (479)
Q Consensus 167 i~~~~~~~~~~~~~ 180 (479)
+.++..+++.+...
T Consensus 358 ~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 358 FAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHh
Confidence 88877666655443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=127.45 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=118.3
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
++....+|.|+++++|++..++++....+.++..++.+++|+++|| +|||+.+.....+..++..+..+..
T Consensus 275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~~~~~~~~-------- 345 (467)
T PRK09556 275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIFTLGVYQH-------- 345 (467)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHHHHHHHHh--------
Confidence 4566789999999999999999999999999999999999999999 7999887765544444333222221
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhh-hHHHHHHHHHHHhh-----
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCA-GGLVAATVMVWIEE----- 157 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-g~~ig~~~~~~l~~----- 157 (479)
+ .+.....+.+++.|+...+..........|.+|+++ ++.+.++.....++ |.+++|.+.|++.+
T Consensus 346 ----~--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~---~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g 416 (467)
T PRK09556 346 ----A--TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA---IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNG 416 (467)
T ss_pred ----c--CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh---HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccc
Confidence 0 033345566677775433333333456679999888 99999998888886 77999999999998
Q ss_pred -------ccchhhHHHHHHHHHHHHHHHHH
Q 011716 158 -------NRGWNCSFKISAVALGLALCIFT 180 (479)
Q Consensus 158 -------~~gw~~~f~i~~~~~~~~~~~~~ 180 (479)
..+|+..|++..++.+++.+..+
T Consensus 417 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 417 TPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 57899999887766666554444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-11 Score=121.30 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=119.6
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
....+|.|+++ .|.++.+.+...+.+.++..+++++.|++.|| +|||+++..+..+..++..... .
T Consensus 219 ~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~----------- 284 (381)
T PRK03633 219 LYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S----------- 284 (381)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h-----------
Confidence 44567888864 69999999999999999999999999999999 8999999888877777665432 1
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
.. .....+.+.|++.+...|...+.+.|..|+++ ++...+.+....++|.++||.++|++.+++||++.|
T Consensus 285 ------~~-~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f 354 (381)
T PRK03633 285 ------QA-AMAPALFILGAAGFTLYPVAMAWACEKVEHHE---LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLF 354 (381)
T ss_pred ------hH-HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence 11 23345667787777888999999999988776 666777777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011716 166 KISAVALGLALCI 178 (479)
Q Consensus 166 ~i~~~~~~~~~~~ 178 (479)
.+.+.+.+++...
T Consensus 355 ~~~~~~~l~~~~~ 367 (381)
T PRK03633 355 IMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHH
Confidence 9877666655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=123.31 Aligned_cols=160 Identities=10% Similarity=-0.033 Sum_probs=131.5
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
++...+|.|+++.+|.++.+.+++.+.+.++..++.++.|+++|| .++++.+..+..+.+++.++....+
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~--------- 310 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMP--------- 310 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccc---------
Confidence 445677888887799999999999999999999999999999999 7888888888877777777666553
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhH
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCS 164 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~ 164 (479)
+.....+..++.|++.+...+...+++.|..|++. |++..++++...++|..+||.+.|++.+.+|++..
T Consensus 311 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~ 380 (417)
T PRK10489 311 -------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM---LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVAS 380 (417)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH---HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhH
Confidence 45556677788888888888888899999999887 99999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 011716 165 FKISAVALGLALCIFTIGFP 184 (479)
Q Consensus 165 f~i~~~~~~~~~~~~~~~~~ 184 (479)
+++.+....+..++.....+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 381 ASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 88776665544444444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-11 Score=123.17 Aligned_cols=148 Identities=15% Similarity=0.097 Sum_probs=115.6
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
+...+|.|+++++|+++.+++++.+.+.++..++.+++|+++|| +|||+++..+..+..++.++.....
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---------- 362 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG---------- 362 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc----------
Confidence 45678999988999999999999999999999999999999999 8999998888766666554433321
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
..+.+......++.+....+..+..++++.|.+|+++ |++.+++.+...++|..+||.++|++.+++||+..+
T Consensus 363 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~ 435 (496)
T PRK03893 363 ----GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ---RAAGLGFTYNVGALGGALAPILGALIAQRLDLGTAL 435 (496)
T ss_pred ----ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH---hhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHH
Confidence 0123333344444443333455777788999999888 999999999999999999999999999999999877
Q ss_pred HHHHHH
Q 011716 166 KISAVA 171 (479)
Q Consensus 166 ~i~~~~ 171 (479)
.+.+..
T Consensus 436 ~~~~~~ 441 (496)
T PRK03893 436 ASLSFS 441 (496)
T ss_pred HHHHHH
Confidence 654433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=121.12 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=123.6
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
...+.|. +++|.++.+.+++.+.+.++..+++++.|+++|| +|||+.+..+..+..++..+....+.
T Consensus 226 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~----------- 292 (377)
T TIGR00890 226 GLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIPM----------- 292 (377)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHccc-----------
Confidence 4445554 5789999999999999999999999999999999 89999999998888888877665531
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKI 167 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i 167 (479)
. +...+....++.+++.+...+..+++..|.+|+++ |++..+..+...++|..++|.+.|++.++.||+..|.+
T Consensus 293 --~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~ 366 (377)
T TIGR00890 293 --L-NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN---SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIV 366 (377)
T ss_pred --c-hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh---hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Confidence 0 12234455677888888888888899999999888 99999999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q 011716 168 SAVALGLA 175 (479)
Q Consensus 168 ~~~~~~~~ 175 (479)
.+++.+++
T Consensus 367 ~~~~~~~~ 374 (377)
T TIGR00890 367 TGAFALTS 374 (377)
T ss_pred HHHHHHHh
Confidence 77665544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=123.07 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=122.3
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
++++..++|.|+++++|+++.+++.+.+.+.++..++++++|+++|| +|||+++.....+..+...+....+
T Consensus 221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~~~~------- 292 (394)
T PRK03699 221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMYLFVNTD------- 292 (394)
T ss_pred HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHcC-------
Confidence 45667889999999999999999999999999999999999999999 8999998887776666555544432
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchh
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWN 162 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~ 162 (479)
+...+.+..++.|++.+...|...+...|..|++ +++..+......++|..++|.+.|++.+..||+
T Consensus 293 ---------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~ 359 (394)
T PRK03699 293 ---------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA----SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ 359 (394)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch
Confidence 3334555667788888888888888888776543 345567777788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 011716 163 CSFKISAVALGLALC 177 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~ 177 (479)
..|++..+...++.+
T Consensus 360 ~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 360 AALLTANGLYAVVFV 374 (394)
T ss_pred hhhhhhHHHHHHHHH
Confidence 999877766555533
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-11 Score=120.66 Aligned_cols=156 Identities=13% Similarity=0.031 Sum_probs=124.1
Q ss_pred hHHHHHHhhhhcCCChh---hHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 7 AINFVAYFLKSMHYPAA---ESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~---~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
.+.++.|+.+..+.... ..+.+.+.+.++..++.+..|+++|| +|||+++..+..+..++.++....+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~-------- 309 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQ-------- 309 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhc--------
Confidence 35566777654442221 24556666777888899999999999 8999999998887777776665553
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+.+.+.+.+++.|++.+...|...+.+.+..|+++ +++.++.++...++|..+||.++|++.++.||+.
T Consensus 310 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~ 378 (408)
T PRK09874 310 --------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI---AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRA 378 (408)
T ss_pred --------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc---ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhH
Confidence 45567778889999999999999999999888877 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 011716 164 SFKISAVALGLALCIFTIG 182 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~~ 182 (479)
.|++.+++.+++.+..+..
T Consensus 379 ~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 379 VFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998888777666555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-11 Score=121.34 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=126.6
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
.+....+.|+++ .|++ +.+.....+.++..+++++.|++.|| +||||.+..+..+..++..+....+
T Consensus 234 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~--------- 300 (392)
T PRK12382 234 VIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP--------- 300 (392)
T ss_pred HHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc---------
Confidence 444566777754 5664 45666777788888999999999999 8999999999888888887766653
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhH
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCS 164 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~ 164 (479)
+.....+.+++.|++.+...|...+...|..|+++ |++..++++...++|..+||.+.|++.++.||+..
T Consensus 301 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~ 370 (392)
T PRK12382 301 -------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV---RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSV 370 (392)
T ss_pred -------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 44566678889999999888988889999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011716 165 FKISAVALGLALCIFTI 181 (479)
Q Consensus 165 f~i~~~~~~~~~~~~~~ 181 (479)
|.+.+.+.+++.+..+.
T Consensus 371 ~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 371 FLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99888777666655443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-13 Score=138.75 Aligned_cols=181 Identities=10% Similarity=0.072 Sum_probs=3.0
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhc-ccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYS-RLQ 81 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (479)
.++.......-++++|+++++++|++.+.|-++..+..++..++++| ..|-|.+-.+.++.++|++++++-+-+. ...
T Consensus 18 ~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~ 96 (539)
T PF03137_consen 18 VSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGPYS 96 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCCCc
Confidence 34555666667889999999999999999999999999999999999 6888899999999999999988753211 000
Q ss_pred --------------cc-c------------------CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchh
Q 011716 82 --------------PA-M------------------NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRR 128 (479)
Q Consensus 82 --------------~~-~------------------~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~ 128 (479)
.+ | +......-...+++++++.|+|....++...+|+=|..++++
T Consensus 97 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~-- 174 (539)
T PF03137_consen 97 YEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN-- 174 (539)
T ss_dssp -------------------------------------------------------SSS----------------------
T ss_pred cccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc--
Confidence 00 2 011111234678889999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHhhhHHHHHHHHHHHhhc---------------------cc-hhhHHHHHHHHHHHHHHHHHhhcccc
Q 011716 129 LISAFFNWFFFSLCAGGLVAATVMVWIEEN---------------------RG-WNCSFKISAVALGLALCIFTIGFPIY 186 (479)
Q Consensus 129 ~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~---------------------~g-w~~~f~i~~~~~~~~~~~~~~~~~~~ 186 (479)
-+.++++.+....+|.++|.++++..... .| |+..|++.+.+.++..+.+..+.|+.
T Consensus 175 -splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 175 -SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 88899999999999999999998876521 13 77788877776665554444444433
Q ss_pred e
Q 011716 187 R 187 (479)
Q Consensus 187 ~ 187 (479)
|
T Consensus 254 p 254 (539)
T PF03137_consen 254 P 254 (539)
T ss_dssp -
T ss_pred C
Confidence 3
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-11 Score=119.20 Aligned_cols=162 Identities=12% Similarity=0.024 Sum_probs=126.0
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
+++++...++.|+++ .|.+..+++...+.+.++..+++++.|+++|| +|||+.+..+..+..++..+....+
T Consensus 220 ~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~~------ 291 (393)
T PRK09705 220 GYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWLP------ 291 (393)
T ss_pred HHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHcc------
Confidence 345677889999975 79999999999999999999999999999999 8999999988877777766544332
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCC-cchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDH-SNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
+ +.... ...+.|++.+...|.......|..++ ++ +++.++..+...+++..++|.+.|++.++.|
T Consensus 292 ------~---~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g 357 (393)
T PRK09705 292 ------L---QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI---AGKLVAFMQGIGFIIAGLAPWFSGVLRSISG 357 (393)
T ss_pred ------c---hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 11112 22456888888888887777788764 34 8889999888999999999999999999876
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhccc
Q 011716 161 -WNCSFKISAVALGLALCIFTIGFPI 185 (479)
Q Consensus 161 -w~~~f~i~~~~~~~~~~~~~~~~~~ 185 (479)
|+..|.+..+..+..++..+...++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 358 NYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccc
Confidence 7888887776666655555554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-11 Score=122.89 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=123.3
Q ss_pred HHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 9 NFVAYFLKSM---HYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 9 ~~~~yl~~~l---~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
..+.|+.+.+ +.+..+.+.+.+...+...++.+++|+++|| +|||+.+..+..+.+++..+.++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~---------- 313 (420)
T PRK09528 245 QFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT---------- 313 (420)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc----------
Confidence 4566665433 5677788999999999999999999999999 8999999999999888888877764
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhH-HHHHHhhhHHHHHHHHHHHhhccchhhH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNW-FFFSLCAGGLVAATVMVWIEENRGWNCS 164 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ig~~ig~~~~~~l~~~~gw~~~ 164 (479)
+.+.+...+++.+++.+...+....++.|.+|++. ++...+. +....++|.+++|.+.|++.+.+||+..
T Consensus 314 ------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~ 384 (420)
T PRK09528 314 ------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL---SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGT 384 (420)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 55567778889999888888888889999998776 6666544 4567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011716 165 FKISAVALGLALCIFTI 181 (479)
Q Consensus 165 f~i~~~~~~~~~~~~~~ 181 (479)
|.+.++..++..++.+.
T Consensus 385 f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 385 YLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99776665554444333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-10 Score=112.61 Aligned_cols=163 Identities=17% Similarity=0.122 Sum_probs=119.4
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccc----cchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSF----LTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~----~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
.....|+++++|+++++.....+...+...+ -++.|.++|.+ +.||.-++++..+..++...++..+.
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~------- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA------- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence 4456688899999999988877776555544 56679999993 13555555566666555555555431
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
...+.....+..++..+|....-....+++.|....++.. ++...+..+....+|.+++..++|.+.+..+++.
T Consensus 82 -----~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~ 155 (433)
T PF03092_consen 82 -----SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQG 155 (433)
T ss_pred -----ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeE
Confidence 1114445566677888999999999999999998766644 7888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 011716 164 SFKISAVALGLALCIFTIGFP 184 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~~~~ 184 (479)
.|.+...+..+..+......+
T Consensus 156 ~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 156 VFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred EehHHHHHHHHHHHHHHHhhh
Confidence 999887765555444444333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-11 Score=119.29 Aligned_cols=156 Identities=12% Similarity=-0.065 Sum_probs=122.4
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
+.+...+|.|++ +.|+++.+.+.+.+.+.++..++.++.|+++|| +|||+.+..+.....++..+....+
T Consensus 237 ~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~-------- 306 (406)
T PRK11551 237 YFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAAP-------- 306 (406)
T ss_pred HHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 345556777876 479999999999999999999999999999999 8999998887666666655554442
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc-chh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR-GWN 162 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~-gw~ 162 (479)
+...+.+..++.|++.++..+...++..|.+|+++ |++..++......+|..+||.++|++.++. +|+
T Consensus 307 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~ 375 (406)
T PRK11551 307 --------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV---RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTV 375 (406)
T ss_pred --------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh---hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchH
Confidence 33445556677888888888899999999999888 999999999999999999999999998864 456
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 011716 163 CSFKISAVALGLALCIFT 180 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~~ 180 (479)
..+++.....+++....+
T Consensus 376 ~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 376 GVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666665555554444333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-11 Score=118.66 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=117.0
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHH-HHH-HHHhhhccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGL-ILL-TIQAQYSRL 80 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~-~l~-~~~~~~~~~ 80 (479)
++.....++.|+++++|.++.+.+.+.....++..++.+++|+++|| +|||+.+..+..+..+.. .+. ....
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~----- 308 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLAVPLLMALLD----- 308 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 34556778999988999999999999999999999999999999999 899998876555444433 222 1211
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhH-HHHHHhhhHHHHHHHHHHHhhcc
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNW-FFFSLCAGGLVAATVMVWIEENR 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ig~~ig~~~~~~l~~~~ 159 (479)
..+.........+.+++.+...+...+++.|.+|+++ |+++.+. +.....+|..++|.++|++.++.
T Consensus 309 ---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~ 376 (394)
T TIGR00883 309 ---------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV---RYTGASLAYNLAGAIFGGFAPYIAAALVAMT 376 (394)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc---eeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence 0134455666788888888899999999999999888 8888887 44556789999999999999988
Q ss_pred c-hhhHHHHHHHH
Q 011716 160 G-WNCSFKISAVA 171 (479)
Q Consensus 160 g-w~~~f~i~~~~ 171 (479)
| |+..++...+.
T Consensus 377 g~~~~~~~~~~~~ 389 (394)
T TIGR00883 377 GDWYAIGYYLAAL 389 (394)
T ss_pred CcchhHHHHHHHH
Confidence 8 88776654443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=123.92 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=122.9
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccc-cchhHHHHHHH--HHHHHHHHHHHHHhhhcc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSF-LTRFTTFILFC--TIELLGLILLTIQAQYSR 79 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~-~Grk~~~~~~~--~~~~~~~~l~~~~~~~~~ 79 (479)
++.....++.|++ ++|++..+++++.+...++..++++++|+++||+ +++|+....+. .+.+++.+++...+
T Consensus 257 ~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---- 331 (455)
T TIGR00892 257 FFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG---- 331 (455)
T ss_pred ccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 4566677888886 5799999999999999999999999999999972 23343333333 33334444444443
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR 159 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~ 159 (479)
+.+.+++.+++.|++.+...+...+++.|.+|+++ +++.++++....++|.++||.++|++.+..
T Consensus 332 ------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 332 ------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR---FSSAVGLVTIVECCAVLIGPPLAGRLVDAT 396 (455)
T ss_pred ------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH---HhhHHhHHHHHHHHHHHccccceeeeehhc
Confidence 55667788999999999999999999999999887 899999999999999999999999998877
Q ss_pred -chhhHHHHHHHHHHHHHH
Q 011716 160 -GWNCSFKISAVALGLALC 177 (479)
Q Consensus 160 -gw~~~f~i~~~~~~~~~~ 177 (479)
+|+..|++.+++.+++.+
T Consensus 397 g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 397 KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred CCcchHHHHhhHHHHHHHH
Confidence 599999988777665544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=117.62 Aligned_cols=164 Identities=10% Similarity=0.003 Sum_probs=117.6
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
.+|...+..+.|+++.+|.+..+...+.........++.++.|+++|| +||||++..+.++..++...+.....
T Consensus 265 ~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~----- 338 (438)
T PRK09952 265 TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMALE----- 338 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 356677888999998999998876666666667778888999999999 89999998887665554433322210
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHH-HHHhhhHHHHHHHHHHHhhcc-
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFF-FSLCAGGLVAATVMVWIEENR- 159 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ig~~ig~~~~~~l~~~~- 159 (479)
.......+....++.+++.+...+..++++.|.+|.+. |..+.++.+ .+..+|+.++|.+.+++.+..
T Consensus 339 -------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~---r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~ 408 (438)
T PRK09952 339 -------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY---RYSGAGVGYQVASVVGGGFTPFIAAALVTYFG 408 (438)
T ss_pred -------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch---hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00023333445566678888888889999999999977 888888744 445589999999999998743
Q ss_pred -chhhHHHHHHHHHHHHHHHHHh
Q 011716 160 -GWNCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 160 -gw~~~f~i~~~~~~~~~~~~~~ 181 (479)
+|+.++....+..+++.+..+.
T Consensus 409 ~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 409 GSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 4887777666665555544443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=114.14 Aligned_cols=152 Identities=9% Similarity=0.001 Sum_probs=128.9
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
++...+..++|++ ++|.++.+.|...+...++..+..++.|++.|| +|+|+.+..+.....+...+.+..+
T Consensus 221 ~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~------- 291 (382)
T TIGR00902 221 HAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAIE------- 291 (382)
T ss_pred HHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhHh-------
Confidence 3455678888986 589999999999999999999999999999999 8999999999999999998888775
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHH-HHHhhhHHHHHHHHHHHhhccch
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFF-FSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
+.+.+++.+.+.|+..|...+....++.+. |+++ ++...+.+. ....+|..+|+.++|++.+++|+
T Consensus 292 ---------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~---~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~ 358 (382)
T TIGR00902 292 ---------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE---IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA 358 (382)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 667788889999999999999999999987 8777 777777764 56789999999999999999986
Q ss_pred hhHHHHHHHHHHHHHH
Q 011716 162 NCSFKISAVALGLALC 177 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~ 177 (479)
..|++.+...+++++
T Consensus 359 -~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 359 -GTFVFMAIIAAAAFF 373 (382)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 556665555554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-11 Score=117.99 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=115.9
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHH-HHHHhhhcccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLIL-LTIQAQYSRLQPA 83 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~ 83 (479)
+....++.|+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+.+..+..+..+.... .....
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~-------- 326 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFAIGA-------- 326 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHHhCC--------
Confidence 344567888888999999999999999999999999999999999 89999988887655333222 22111
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-hh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-WN 162 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w~ 162 (479)
+...+.+..++.+...++..+..++++.|.+|+++ |++.+++.+...++|..++|.+.|++.++.| |+
T Consensus 327 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~ 395 (405)
T TIGR00891 327 --------NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ---RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG 395 (405)
T ss_pred --------chHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch---hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33445556667777777778888899999999888 9999999999999999999999999999888 88
Q ss_pred hHHHH
Q 011716 163 CSFKI 167 (479)
Q Consensus 163 ~~f~i 167 (479)
..+..
T Consensus 396 ~~~~~ 400 (405)
T TIGR00891 396 TALAS 400 (405)
T ss_pred hhHHh
Confidence 76664
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.8e-10 Score=108.34 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=129.3
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
+.|...+++.+++++..|++.++.+++.-.|.++..++.+++|+++|| +.|+.+.....+.++....+.+..+
T Consensus 226 g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~~----- 298 (394)
T COG2814 226 GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTGA----- 298 (394)
T ss_pred chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhcc-----
Confidence 457788999999999999999999999999999999999999999999 7888888887777777766655531
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
+.....+..++-|++.+........-+++.. ++. +..+.+.+....|+|..+|..++|.+.+++|+
T Consensus 299 ----------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~---~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~ 364 (394)
T COG2814 299 ----------SPALALALLFLWGFAFSPALQGLQTRLARLA-PDA---ADLAGSLNVAAFNLGIALGAALGGLVLDALGY 364 (394)
T ss_pred ----------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 3344555555566665555555555555522 334 68888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q 011716 162 NCSFKISAVALGLALCIFTIGFP 184 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~~~~ 184 (479)
+...++.+++.++++.+.+...+
T Consensus 365 ~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 365 AATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888777665543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=122.49 Aligned_cols=134 Identities=8% Similarity=-0.021 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHH
Q 011716 26 AIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMAT 105 (479)
Q Consensus 26 g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 105 (479)
.+......++..++.+++|+++|| +|||++++.+.++.+++.++.++.. +...+++.+++.++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~----------------s~~~ll~~~~l~g~ 660 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN----------------SESAMIALLCLFGG 660 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc----------------cHHHHHHHHHHHHH
Confidence 444556678899999999999999 8999999999999999888887774 44456667778888
Q ss_pred hccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHH
Q 011716 106 GVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFT 180 (479)
Q Consensus 106 g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 180 (479)
..++..+...++++|++|.+. |++++++.+....+|.++||.+++.+... +...+|++.+++.+++.++..
T Consensus 661 ~~~~~~~~~~a~~aEl~Pt~~---Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 661 LSIAAWNALDVLTVELYPSDK---RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL 731 (742)
T ss_pred HHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999988 99999999999999999999999988764 456677777766665554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=116.98 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=108.4
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcccc--c-hhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL--T-RFTTFILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~--G-rk~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
+++...+|.|+.+++|++..+++...+.+.++..++++++|+++|| + + ||+..........+.........
T Consensus 260 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~~~~~~~~~~~----- 333 (434)
T PRK11663 260 AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGILLSVGSLWLMP----- 333 (434)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHHHHHHHHHHcc-----
Confidence 3556678999988899999999999999999999999999999999 6 2 23322221111111111111111
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
.. +.....+..+..|++............+|.+|+++ |++..++.+...++|.+++|.+.|++.+++|
T Consensus 334 --------~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g 401 (434)
T PRK11663 334 --------FA-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA---AGAATGFVGLFAYLGAALSGYPLAKVLEIWH 401 (434)
T ss_pred --------cc-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh---HHhHHHHHHHHHHHHHHHhcccHHHHHHhcc
Confidence 00 22222233333443322222233456678888777 9999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 011716 161 WNCSFKISAVALGLALCIFTIG 182 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~ 182 (479)
|+..|++.+++.+++.+..+..
T Consensus 402 ~~~~f~~~~~~~~~~~~~~~~~ 423 (434)
T PRK11663 402 WTGFFVVISIAAGISALLLLPF 423 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998777766655544443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.4e-10 Score=115.51 Aligned_cols=161 Identities=11% Similarity=-0.023 Sum_probs=116.6
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC-
Q 011716 11 VAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPS- 89 (479)
Q Consensus 11 ~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 89 (479)
.+++.+++|++..+.++......++..++.+++|+++|| +|||+.+..++.+..++.++.++...... +.
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 377 (481)
T TIGR00879 307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV--------TGS 377 (481)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc--------CCc
Confidence 344446789999888999999999999999999999999 89999999998888887777663210000 00
Q ss_pred --chhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHH
Q 011716 90 --HTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKI 167 (479)
Q Consensus 90 --~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i 167 (479)
..+...+....+..+....+..+....+..|.+|+++ |++..+......++|.+++|.+.+++.++.+|++.|++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~ 454 (481)
T TIGR00879 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL---RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIF 454 (481)
T ss_pred ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehh
Confidence 0012122222222222223344777788899999888 89999999999999999999999999998899999988
Q ss_pred HHHHHHHHHHHHHhhc
Q 011716 168 SAVALGLALCIFTIGF 183 (479)
Q Consensus 168 ~~~~~~~~~~~~~~~~ 183 (479)
.+++.+++.+......
T Consensus 455 ~~~~~~~~~i~~~~~~ 470 (481)
T TIGR00879 455 FGGLNVLGLIFVYFFL 470 (481)
T ss_pred HHHHHHHHHHHHheec
Confidence 7766665555544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=117.78 Aligned_cols=160 Identities=13% Similarity=0.121 Sum_probs=110.2
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcccc--chhHHHH-HHHHHHHHHHHHHHHHhhhcc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL--TRFTTFI-LFCTIELLGLILLTIQAQYSR 79 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~--Grk~~~~-~~~~~~~~~~~l~~~~~~~~~ 79 (479)
+|++...+|.|++++.|++..++++....+.++..++.+++|+++|| + |||+... ....+..++........
T Consensus 269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~~~~~~~~~~~---- 343 (452)
T PRK11273 269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWLNP---- 343 (452)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHHHHHHHHHHhc----
Confidence 35677889999998899999999999999999999999999999999 7 4554322 22233333333222211
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHH-HHHHHHHHhhc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLV-AATVMVWIEEN 158 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~i-g~~~~~~l~~~ 158 (479)
. .+.....+..++.|.+.....+....+..|.+|+++ |+++.++.....++|+.+ +|.+.|++.++
T Consensus 344 ---------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~ 410 (452)
T PRK11273 344 ---------A-GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA---AGTAAGFTGLFGYLGGSVAASAIVGYTVDF 410 (452)
T ss_pred ---------c-cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh---hhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 0 022233344444554332222333456678999888 999999988888888655 79999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHH
Q 011716 159 RGWNCSFKISAVALGLALCIFT 180 (479)
Q Consensus 159 ~gw~~~f~i~~~~~~~~~~~~~ 180 (479)
.||+..|++.+...+++++...
T Consensus 411 ~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 411 FGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred hcchHHHHHHHHHHHHHHHHHH
Confidence 9999999877766555544433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=112.83 Aligned_cols=163 Identities=14% Similarity=0.165 Sum_probs=122.9
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcccc-chhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL-TRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~-Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
|++....|.|+.|..|+|..++++..+.|-.+...++++.||+|||+| |||....+.+.+....++..-...
T Consensus 269 ~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~------- 341 (448)
T COG2271 269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA------- 341 (448)
T ss_pred HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-------
Confidence 677888999999999999999999999999999999999999999999 788766654444333332222221
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhh-hHHHHHHHHHHHhhccch
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCA-GGLVAATVMVWIEENRGW 161 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-g~~ig~~~~~~l~~~~gw 161 (479)
+++ +.....+..+.+|+-.-+-+-.......|..|++- .+.+.+.......+ |.+.+....|++.+.+||
T Consensus 342 -----~~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A---aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW 412 (448)
T COG2271 342 -----PNG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA---AGTATGFVGLFAYLIGAALAGLPLGYIADTWGW 412 (448)
T ss_pred -----CCc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh---ccchhchhhhHHHHhhHHhcCCcceeeEecCCC
Confidence 111 45566666777776555555555666778888766 88999988777778 888888889999898999
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 011716 162 NCSFKISAVALGLALCIFTIG 182 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~~ 182 (479)
...|.+-.+..+++.+.....
T Consensus 413 ~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 413 DGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 999987766666665554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=113.32 Aligned_cols=159 Identities=18% Similarity=0.075 Sum_probs=113.5
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHH-HHHHHHHHHHH---HHHHHHHhhhcc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTT-FILFCTIELLG---LILLTIQAQYSR 79 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~-~~~~~~~~~~~---~~l~~~~~~~~~ 79 (479)
+......+.|+++++|.++.+.+++.+...++..++.+++|+++|| +|||+. +........++ ..+.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 306 (399)
T TIGR00893 232 GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAIIAGLVLSLLMFAT---- 306 (399)
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHHHHHHHHHh----
Confidence 4456678889998999999999999999999999999999999999 799861 11111111111 11111111
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR 159 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~ 159 (479)
....+.... ......+....+..|...++..|.+|+++ |++..++.....++|..++|.+.|++.+..
T Consensus 307 --------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~ 374 (399)
T TIGR00893 307 --------NYVNIPYAA-LALVALGFFGLGAGAIGWALISDNAPGNI---AGLTGGLINSLGNLGGIVGPIVIGAIAATT 374 (399)
T ss_pred --------ccchhHHHH-HHHHHHHHhchhhhhHHHHHHHhhcChhH---HHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence 000022222 23333333333478999999999999888 999999999999999999999999999988
Q ss_pred c-hhhHHHHHHHHHHHHHHHH
Q 011716 160 G-WNCSFKISAVALGLALCIF 179 (479)
Q Consensus 160 g-w~~~f~i~~~~~~~~~~~~ 179 (479)
| |+..|++.++..+++.+..
T Consensus 375 g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 375 GSFAGALMVVAALALIGALSY 395 (399)
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 8 9999987777666554443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-10 Score=112.25 Aligned_cols=161 Identities=13% Similarity=0.031 Sum_probs=117.0
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHH-HHHHHHHHHHHHHHHHhhhcccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFI-LFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
+++.....|.|++ ++|+++.+.+++.+...++..++.++.|+++|| +|||+.+. .+.....++...+.....
T Consensus 238 ~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~~~----- 310 (402)
T TIGR00897 238 LFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYIPQ----- 310 (402)
T ss_pred HHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4566778888885 589999999999999999999999999999999 79888764 233333333333322210
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
....+.....+..++.|++.+...|. .+...|. ++++ |++++++.+...++|..++|.+++.+.+.+||
T Consensus 311 ------~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~~---~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~ 379 (402)
T TIGR00897 311 ------HFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTL-APKH---KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA 379 (402)
T ss_pred ------ccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-Ccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 00113445556677778777766554 4555665 4445 89999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 011716 162 NCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~ 181 (479)
+..|++.+++.+++.+..++
T Consensus 380 ~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 380 IGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888776665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-09 Score=104.71 Aligned_cols=341 Identities=11% Similarity=-0.039 Sum_probs=193.4
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
.+..|..+-+| +...+-|..-+|+..+....+++-|+.|| +|=|...+++..+-.+|..+=.++.. |.+.
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~-p~v~------- 135 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSL-PFVP------- 135 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccC-cccc-------
Confidence 45556666667 67777788889999999999999999999 89999999999999999988766631 1100
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc------cchh
Q 011716 89 SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN------RGWN 162 (479)
Q Consensus 89 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~------~gw~ 162 (479)
........+.+..+.+.+.-........+.+-|||++| |..+...-.++..+|.++|.++...+..+ .+|.
T Consensus 136 ~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q---ra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~ 212 (480)
T KOG2563|consen 136 PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ---RAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWL 212 (480)
T ss_pred ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch---hhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHH
Confidence 11111366778888888888888888888899999999 88888887778888888887777766543 3465
Q ss_pred h--HHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhc
Q 011716 163 C--SFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKAL 240 (479)
Q Consensus 163 ~--~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (479)
. .|....++..+.+....+.+++.|+.+|..... +.++ .++.
T Consensus 213 ~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~-----------~~~~---------------------~~f~---- 256 (480)
T KOG2563|consen 213 FFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQA-----------ALQD---------------------ASFP---- 256 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHh-----------hhhc---------------------CcHH----
Confidence 4 344333333333344444444444444432110 0000 0000
Q ss_pred ccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhh---cccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccc
Q 011716 241 FDDTITAAQVEETKTFLGLLPIFASTIMMNCCLA---QLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYE 317 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 317 (479)
+..++.++...+.+....+..... ..++.+... +.... ..+...+.......+..++...+.+
T Consensus 257 ----------~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~---l~~sg-Y~~~~aG~ig~l~iv~Gmlga~~~g 322 (480)
T KOG2563|consen 257 ----------KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLA---LCPSG-YEGVFAGYIGALMIVAGMLGALASG 322 (480)
T ss_pred ----------HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhc---ccccc-CCccccchhHHHHHHHHHHHHHHHH
Confidence 111222222222222222222221 122222211 11110 0112334444433444555556666
Q ss_pred hhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011716 318 RSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEF 397 (479)
Q Consensus 318 ~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 397 (479)
.+.||..+-. .. ..+......++. +....... ..-..+++.....+.|.......|..+|+
T Consensus 323 ii~Dktk~fk--------~~--~~v~~~~~~v~~--~~l~~~t~-------~~~~~viv~~t~~~~g~~~~~~~Pig~El 383 (480)
T KOG2563|consen 323 IIADKTKKFK--------LT--TLVLYLFALVGT--LMLLTCTL-------FLGDSVIVFTTCGLLGFFGTGYLPIGFEL 383 (480)
T ss_pred hhhhhhhhHH--------HH--HHHHHHHHHHHH--HHHHHhhc-------cCCceEehhhhHHHHHHhhcCCCCcceee
Confidence 6665543221 11 122222222221 11111110 01233445555677788888889999999
Q ss_pred hcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011716 398 FYSEAPHSMRSISTALSWCSTSMGYFLSSALVSI 431 (479)
Q Consensus 398 ~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~ 431 (479)
..|..=+...++..|+.++..++-+.+=..+-+.
T Consensus 384 gvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~ 417 (480)
T KOG2563|consen 384 GVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGI 417 (480)
T ss_pred eeeeccccCCcccceeEEeehhHHHHHHHHHHHH
Confidence 9998878888899998877665555554444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.9e-10 Score=112.96 Aligned_cols=143 Identities=16% Similarity=0.163 Sum_probs=102.6
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHH-HHHHHhhhcccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLI-LLTIQAQYSRLQ 81 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 81 (479)
++++....|.|+++.+|++..++++....+.++..++.+++|+++|| +|||+++..+..+..+... ......
T Consensus 254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~------ 326 (434)
T PRK15075 254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLV------ 326 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH------
Confidence 45667778999998899999999999888889999999999999999 8999988776544433221 111111
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHh-hhHHHHHHHHHHHhhccc
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLC-AGGLVAATVMVWIEENRG 160 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-ig~~ig~~~~~~l~~~~g 160 (479)
+. .+.........+.+++.+...+...++..|.+|++. |+..+++.+...+ +++.++|.+.+++.++.|
T Consensus 327 ------~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~---rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 327 ------AA-PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV---RTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred ------cC-CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc---cchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 00 022223334455566666767777788999999888 8888888544333 457779999999999888
Q ss_pred hh
Q 011716 161 WN 162 (479)
Q Consensus 161 w~ 162 (479)
++
T Consensus 397 ~~ 398 (434)
T PRK15075 397 DK 398 (434)
T ss_pred Cc
Confidence 53
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=113.50 Aligned_cols=162 Identities=14% Similarity=0.174 Sum_probs=117.6
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHH-HHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVN-NFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~-~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
.....++|+.+++|+++.+.+++.. ...++..++.+++|+++|| +|||+.+..+..+.+++.........
T Consensus 241 ~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~~-------- 311 (491)
T PRK11010 241 AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLSI-------- 311 (491)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 3456777887789999999999985 4467899999999999999 79999877766555554433221110
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhH
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCS 164 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~ 164 (479)
...+...+....++..+..|...+...++..+..+++. .++.++..+...++|..+++.+.|++.+.+||+..
T Consensus 312 ----~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~---~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~ 384 (491)
T PRK11010 312 ----TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF---SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTF 384 (491)
T ss_pred ----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 00033333444555555555555666788888888777 67778888888899999888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 011716 165 FKISAVALGLALCIFTIGF 183 (479)
Q Consensus 165 f~i~~~~~~~~~~~~~~~~ 183 (479)
|.+..++.+.+++.....+
T Consensus 385 f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 385 YLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9988888777766655544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=113.11 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=138.3
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc---
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ--- 81 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 81 (479)
+........+++.+++++++.|++.+.|-++..+...+..|.+-| .-|-+.+-.+..+.++|++++++-+-+..-.
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~ 192 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE 192 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence 444556667789999999999999999999999999999999999 7899999999999999999998752111000
Q ss_pred ----------c------------------c---cC--CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchh
Q 011716 82 ----------P------------------A---MN--RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRR 128 (479)
Q Consensus 82 ----------~------------------~---~~--~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~ 128 (479)
+ . +. ...+..-+..++++.++.|+|....+|...+|+=|...+++
T Consensus 193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~-- 270 (735)
T KOG3626|consen 193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN-- 270 (735)
T ss_pred hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC--
Confidence 0 0 00 01111234467789999999999999999999999988777
Q ss_pred hhhhhhhHHHHHHhhhHHHHHHHHHHHhhc------------------cc-hhhHHHHHHHHHHHHHHHHHhhccc
Q 011716 129 LISAFFNWFFFSLCAGGLVAATVMVWIEEN------------------RG-WNCSFKISAVALGLALCIFTIGFPI 185 (479)
Q Consensus 129 ~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~------------------~g-w~~~f~i~~~~~~~~~~~~~~~~~~ 185 (479)
-...+++.+....+|+++|-++++++... .| |+..|++.+.+.++..+.++.+.++
T Consensus 271 -SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 271 -SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE 345 (735)
T ss_pred -CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 88999999999999999999999997521 13 7888888888777766665555443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-09 Score=109.73 Aligned_cols=156 Identities=8% Similarity=-0.065 Sum_probs=112.3
Q ss_pred HhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchh
Q 011716 13 YFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQ 92 (479)
Q Consensus 13 yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (479)
++.+++|.+..+.++......+...++.+++|+++|| +|||++++.+.++.+++.++++.... +....
T Consensus 296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~-----------~~~~~ 363 (479)
T PRK10077 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFY-----------TQAPG 363 (479)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHh-----------cCccc
Confidence 3345789888777777777888889999999999999 89999999999999998877765421 00001
Q ss_pred HHHHHHHHHHHHHhccc-cccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHH------hhccchhhHH
Q 011716 93 AAILYTGLYAMATGVGG-VKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWI------EENRGWNCSF 165 (479)
Q Consensus 93 ~~~l~~~~~l~g~g~g~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l------~~~~gw~~~f 165 (479)
. .......+.+.+.+. ..|..++++.|.+|+++ |+.+.++.+...++|.++++.+.+.+ .++++|+..|
T Consensus 364 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 439 (479)
T PRK10077 364 I-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI---RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSY 439 (479)
T ss_pred H-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHH
Confidence 1 222233444444443 34778899999999888 99999999888889988886665544 4567888888
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 011716 166 KISAVALGLALCIFTIGFP 184 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~ 184 (479)
++.++..+++.+..++..|
T Consensus 440 ~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 440 WIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 8877665555554444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=111.12 Aligned_cols=137 Identities=8% Similarity=-0.058 Sum_probs=112.2
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
...|.|++..+|.++.+.++....+.++..++.++.|+++|| +|||+++..+..+..++..+.....
T Consensus 282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~------------ 348 (471)
T PRK10504 282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVSLLFMLVA------------ 348 (471)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHhcc------------
Confidence 456677777799999999999999989999999999999999 8999999988888887766655532
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
+. .+...+.+..++.|++.+...+..+.+..+..|+++ ++...+.+....++|..+|+.++|.+.+..|+
T Consensus 349 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 349 LL-GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL---ASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 01 123334455677888888888999999999999877 89999999999999999999999998776665
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-09 Score=108.60 Aligned_cols=161 Identities=13% Similarity=0.042 Sum_probs=103.8
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHH-Hhhhccc
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTI-QAQYSRL 80 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~-~~~~~~~ 80 (479)
.+|+...++|.|+.+++|.+..+.+...+.......++.++.|+++|| +|||+.+..+..+..+....... ...
T Consensus 258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~---- 332 (432)
T PRK10406 258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQN---- 332 (432)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 356778889999998899999999998888888888889999999999 89999887766554333322211 110
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhh-hHHHHHHHHHHHhhcc
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCA-GGLVAATVMVWIEENR 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-g~~ig~~~~~~l~~~~ 159 (479)
.. +.........+..++.+...+...++..|.+|++. |+.+.++.+...++ .+...|.+.+.+. ..
T Consensus 333 -------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~---r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~ 399 (432)
T PRK10406 333 -------VS--SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV---RALGVGLSYAVANALFGGSAEYVALSLK-SI 399 (432)
T ss_pred -------CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc---cchhhhHHHHHHHHHHHhHHHHHHHHHH-Hh
Confidence 00 11111111122223333344556788899999988 99999997655554 3445788877664 44
Q ss_pred c-hhhHHHHHHHHHHHHHHHHH
Q 011716 160 G-WNCSFKISAVALGLALCIFT 180 (479)
Q Consensus 160 g-w~~~f~i~~~~~~~~~~~~~ 180 (479)
| |...++..++..+++.+..+
T Consensus 400 g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 400 GMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred CCCcHHHHHHHHHHHHHHHHHH
Confidence 5 55555555444444444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=104.87 Aligned_cols=167 Identities=12% Similarity=0.047 Sum_probs=124.3
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
|-+....++.|++++++.++.++|.....+.+...+.++.+|+++|| +|.+|+........+++..+.....+..
T Consensus 234 Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~~~~~~l~~~~~~~---- 308 (417)
T COG2223 234 FVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMALAAALLSLFLTGF---- 308 (417)
T ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHHHHHHHHHcccccc----
Confidence 45677889999999999999999999999999999999999999999 8999999988888888887776653111
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-h
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-W 161 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w 161 (479)
....+........+.+++..|.-......++...+|+ + .+...++.....++|+..-|...+...+..| +
T Consensus 309 -----~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~---~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~ 379 (417)
T COG2223 309 -----GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-E---TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY 379 (417)
T ss_pred -----ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-h---hhHHHHHHHHhccccccchhHHHHHHHHhcccH
Confidence 0001222333323333333344444445666666654 2 6888899888999999888999999888887 8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc
Q 011716 162 NCSFKISAVALGLALCIFTIGF 183 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~~~ 183 (479)
+..|++.....+.+.++.+...
T Consensus 380 ~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 380 TGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988877777766655543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=103.22 Aligned_cols=343 Identities=13% Similarity=0.056 Sum_probs=196.3
Q ss_pred HHHHHHhhhhcCCChh-hHHHHHHHH----HHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 8 INFVAYFLKSMHYPAA-ESAIMVNNF----MGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~-~~g~i~~~~----~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
.+...+.....+.+.. +.+...... .+...+.++..|.++|| +|||..+........+......+.
T Consensus 42 ~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~-------- 112 (463)
T KOG2816|consen 42 TNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQ-------- 112 (463)
T ss_pred hhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHH--------
Confidence 4444454444443332 334444444 56778889999999999 799999999988888777766665
Q ss_pred ccCCCCCchhHHHHHHHHHHHH--HhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 83 AMNRRPSHTQAAILYTGLYAMA--TGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g--~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
.+ ++.+ +.+ -+.+.......++++|...+++ |...+++.......+..++|..++++.+..|
T Consensus 113 ---------~~-~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~---R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~ 176 (463)
T KOG2816|consen 113 ---------GY-WFFL---LLGLSGGFSAIFSVGFAYVADISSEEE---RSSSIGLLSGTFGAGLVIGPALGGYLVKFLG 176 (463)
T ss_pred ---------HH-HHhh---hcccccchhhhhhhhhhheeeccchhH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 32 2222 333 3445677888899999999888 9999999998899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccceecCCCC-CchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhh
Q 011716 161 WNCSFKISAVALGLALCIFTIGFPIYRYKRPSG-SPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKA 239 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
.-..|.++.+..++..+-.....|+...++.++ .+. ++.+ ..... .++..
T Consensus 177 ~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~-----------~~~~-~~~~~--------~~~~~--------- 227 (463)
T KOG2816|consen 177 IALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL-----------RELT-PGSLD--------SSHVA--------- 227 (463)
T ss_pred chHHHHHHHHHHHHHHHHHhhccccccCccccccccc-----------cccC-CCccc--------chhhh---------
Confidence 999999999888888777777666532221111 000 0000 00000 00000
Q ss_pred cccCCCcchhh-hhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccc-
Q 011716 240 LFDDTITAAQV-EETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYE- 317 (479)
Q Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~- 317 (479)
+++..... ...|..+.. ..........-.....-.. .. .++...+.-....+.+.........+...+.-
T Consensus 228 ---~~~~~~~~~~~~r~~l~l--~l~~~~~~~~~~~~~~~~~-~~--yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~ 299 (463)
T KOG2816|consen 228 ---DAFQSLTKVGPDRLLLLL--LLVAFLSSLPEAGGASDVL-LL--YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLP 299 (463)
T ss_pred ---hhhhhhcccCCCccchHH--HHHHHHHHHHHhcCceeEE-EE--EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 111111110 1111111111110000000 00 11111111011111111111111122111111
Q ss_pred hhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011716 318 RSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEF 397 (479)
Q Consensus 318 ~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 397 (479)
.+...++.| +.+..|+..-.+...+.++.+ ..| .+....+.........|..-++
T Consensus 300 ~l~~~l~~~-----------~~i~lGl~~~~~~~~~~af~~-------------~~w-~~~~~~v~~~~~~~~~pa~~s~ 354 (463)
T KOG2816|consen 300 LLSSILGEK-----------RLISLGLLSEFLQLLLFAFAT-------------ETW-MMFAAGVVVALAGIVFPAIRAF 354 (463)
T ss_pred HHHHHHhhh-----------hHhhHHHHHHHHHHHHHHHhc-------------cch-hhhHHHHHHHhhcchhHHHHhH
Confidence 222222222 237888888888888888753 222 3333344455566778999999
Q ss_pred hcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhcccc
Q 011716 398 FYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSG 437 (479)
Q Consensus 398 ~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~ 437 (479)
+....+++.+|..+++......+.+.+++.+-+.+...+.
T Consensus 355 ~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 355 ASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred HHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-09 Score=105.48 Aligned_cols=153 Identities=11% Similarity=-0.081 Sum_probs=117.0
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
....|.|+.+++|+++.+.++.......+..++.++.|+++|| +|||+.+..+..+..++..+......
T Consensus 235 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~---------- 303 (406)
T PRK15402 235 IALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLLLAALATV---------- 303 (406)
T ss_pred HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3446778888899999999998888888889999999999999 79999999998888888777765421
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
....+...+.+...+.|+|.+...+..+....+. ++++ +++..+..+....+|..+|+.+++++.+..++....+
T Consensus 304 -~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~---~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 378 (406)
T PRK15402 304 -ISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS---KGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNL 378 (406)
T ss_pred -cccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc---ccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Confidence 0111344566778889999988887776665443 3355 8889999888999999999999999988777765555
Q ss_pred HHHHHHHHH
Q 011716 167 ISAVALGLA 175 (479)
Q Consensus 167 i~~~~~~~~ 175 (479)
..++..++.
T Consensus 379 ~~~~~~~~~ 387 (406)
T PRK15402 379 FNLANGLLW 387 (406)
T ss_pred HHHHHHHHH
Confidence 544444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-09 Score=105.70 Aligned_cols=150 Identities=11% Similarity=0.006 Sum_probs=119.3
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
+.....+.|++ +.|.+..+.|...+...++..+..++.|++.|| +|+|+.+..+....+++..+.+..+
T Consensus 223 ~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~--------- 291 (382)
T PRK11128 223 AYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGSTT--------- 291 (382)
T ss_pred hHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhh---------
Confidence 45677788885 589999999999998888999999999999999 7999999999988888877776664
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHH-HHHhhhHHHHHHHHHHHhhccchhh
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFF-FSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+.+.+++..++.|++.+...+....++.+. ++++ +++..+... ....+|..+||.++|++.+.+|+.
T Consensus 292 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~- 359 (382)
T PRK11128 292 -------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE---VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG- 359 (382)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-
Confidence 566777888999999998888888888875 4444 566677654 556778899999999999998874
Q ss_pred HHHHHHHHHHHHHH
Q 011716 164 SFKISAVALGLALC 177 (479)
Q Consensus 164 ~f~i~~~~~~~~~~ 177 (479)
.|+..+++.++++.
T Consensus 360 ~~~~~~~~~~~~~~ 373 (382)
T PRK11128 360 VFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 56555555444443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=108.13 Aligned_cols=164 Identities=9% Similarity=0.054 Sum_probs=132.7
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchh--HHHHHHHHHHHHHHHHHHH--Hhhhcc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRF--TTFILFCTIELLGLILLTI--QAQYSR 79 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk--~~~~~~~~~~~~~~~l~~~--~~~~~~ 79 (479)
.++......|.++++|++..|...+.....+...++++++|++.|| +|.| ++++.++.+..+..+...+ ..+ .
T Consensus 298 ~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~-~- 374 (477)
T PF11700_consen 298 NTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFWPS-F- 374 (477)
T ss_pred HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhhhc-c-
Confidence 4566778889999999999999988889999999999999999999 8999 8888887777543332222 110 0
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR 159 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~ 159 (479)
....+.+.+++.-.+.|+..|+.++..-++.++..|+++ .+..++.+.+..-..+.+||++.|.+.+..
T Consensus 375 --------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~---e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 375 --------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR---EAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred --------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111255667777789999999999999999999999988 899999999999999999999999999877
Q ss_pred c-hhhHHHHHHHHHHHHHHHHHh
Q 011716 160 G-WNCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 160 g-w~~~f~i~~~~~~~~~~~~~~ 181 (479)
| -|..+..-.++.++++++.+.
T Consensus 444 g~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 444 GSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred CCchhHHHHHHHHHHHHHHHHhh
Confidence 6 788888766677766666544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=108.15 Aligned_cols=134 Identities=10% Similarity=0.085 Sum_probs=115.9
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
...|.|.++.+|.++.+.+.+...+.++..++.++.|++.|| +|||+.+..+..+.+++..+.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------ 298 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLAILVVGLTP------------ 298 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHhhc------------
Confidence 556777776799999999999999999999999999999999 8999999888777777776666553
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
. +.+.+.+..++.|++.+...+...+++.|..|+++ |++..+......++|..++|.++|++.+++|
T Consensus 299 -~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 299 -P--NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL---LGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred -h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 25567778889999999999999999999999888 9999999999999999999999999988654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-09 Score=105.65 Aligned_cols=150 Identities=11% Similarity=0.002 Sum_probs=106.6
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+.+++|+.+.+|.++.+.+...+.+.++..++.++.|++.|| +|||+.+..+..+.+++.++.....+
T Consensus 219 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~~~~~~~---------- 287 (382)
T PRK10091 219 FSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLMLFFFGG---------- 287 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHHHHHHHh----------
Confidence 4456778888899999999999999999999999999999999 89999999888888887765543320
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccC-CCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc-cchhhH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQL-DHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN-RGWNCS 164 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~-~gw~~~ 164 (479)
+.+...+..++.++|..+..+.......+.. +++. ++... .....++|.++||.++|++.+. .+|+..
T Consensus 288 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~ 357 (382)
T PRK10091 288 -----MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL---LGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYV 357 (382)
T ss_pred -----hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH---HHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchH
Confidence 2233444455566665555544443333333 3333 33332 2456789999999999999985 689999
Q ss_pred HHHHHHHHHHHHH
Q 011716 165 FKISAVALGLALC 177 (479)
Q Consensus 165 f~i~~~~~~~~~~ 177 (479)
+.+.++...+.+.
T Consensus 358 ~~~~~~~~~~~~~ 370 (382)
T PRK10091 358 ALPAALLSFAAMS 370 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 9887666544433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-09 Score=103.30 Aligned_cols=143 Identities=9% Similarity=0.077 Sum_probs=112.6
Q ss_pred hhHHHHHHhhh--hcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 6 NAINFVAYFLK--SMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 6 ~~~~~~~yl~~--~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
+..+++.|+.+ ++|+++++.+...+.+..+..+++++++++.|| +|+||++..+..+..++..+....+
T Consensus 159 ~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~-------- 229 (310)
T TIGR01272 159 AGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH-------- 229 (310)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 45678899975 479999999999999999999999999999999 8999998888877777765544432
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+. .......+.|++.+..+|...+...+.+|++. .++. ++. ....+|++++|.+.|.+.+..|.+.
T Consensus 230 --------~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~--~~as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~ 295 (310)
T TIGR01272 230 --------GY-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT--SQGS--GIL-CLAIVGGAIVPLLQGSLADCLGIQL 295 (310)
T ss_pred --------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhH--HHH-HHHHhcchHHHHHHHHHHHhccchH
Confidence 11 12235558899999999999999999887643 1233 333 4667899999999999999899998
Q ss_pred HHHHHHHH
Q 011716 164 SFKISAVA 171 (479)
Q Consensus 164 ~f~i~~~~ 171 (479)
+|++..++
T Consensus 296 a~~v~~~~ 303 (310)
T TIGR01272 296 AFALPVPC 303 (310)
T ss_pred HHHHHHHH
Confidence 88865544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-08 Score=96.89 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=109.5
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHH
Q 011716 16 KSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAI 95 (479)
Q Consensus 16 ~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (479)
++.|++..|++.+...-.....+..++.|.++|| +|||+.-+..+++++++.+.--. + +...
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~-~----------------~~~~ 123 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS-S----------------NYPV 123 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc-c----------------ccHH
Confidence 5789999999999999999999999999999999 89999888888888777654322 2 7789
Q ss_pred HHHHHHHHHHhccccccchhhhhcccCCCcc--hhhhhhhhhHHH-HHHhhhHHHHHHHHHHHhhccch--hhHHHHHHH
Q 011716 96 LYTGLYAMATGVGGVKAALPAHGADQLDHSN--RRLISAFFNWFF-FSLCAGGLVAATVMVWIEENRGW--NCSFKISAV 170 (479)
Q Consensus 96 l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~-~~~~ig~~ig~~~~~~l~~~~gw--~~~f~i~~~ 170 (479)
++++|++-|++......+-.+.......++. ++-.+.-++... ..+.+-++.+..++-++.+..+. ..+|..+.+
T Consensus 124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~ 203 (354)
T PF05631_consen 124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIV 203 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHH
Confidence 9999999999999998888886654332222 122344444333 23334556666677777766554 688998888
Q ss_pred HHHHHHHHHHhhc
Q 011716 171 ALGLALCIFTIGF 183 (479)
Q Consensus 171 ~~~~~~~~~~~~~ 183 (479)
+.+++.+......
T Consensus 204 ~l~~~~~~I~~~W 216 (354)
T PF05631_consen 204 LLAVAAVLILKTW 216 (354)
T ss_pred HHHHHHHHHHhcc
Confidence 8777766554433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.9e-10 Score=111.68 Aligned_cols=162 Identities=14% Similarity=0.107 Sum_probs=118.2
Q ss_pred hHHHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccch-hHHHHHHHHHHHHHHHHH-HHHhhhcccccc
Q 011716 7 AINFVAYFLK-SMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTR-FTTFILFCTIELLGLILL-TIQAQYSRLQPA 83 (479)
Q Consensus 7 ~~~~~~yl~~-~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Gr-k~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 83 (479)
.+..-+|+++ +.+.+.+--|+++++..++..+.++..|+.+.| .++ |+.++.+.++..+|.++- ++.. .+
T Consensus 54 ~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~s~ii~~~g~llY~~l~~-~~----- 126 (488)
T KOG2325|consen 54 LTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIVSFLIAIIGNLLYLALAY-VP----- 126 (488)
T ss_pred EeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHHHHHHHHHHHHHHHHHHh-cc-----
Confidence 3444567664 478888889999999999999999999999999 675 888888999999999887 4442 11
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh----cc
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE----NR 159 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~----~~ 159 (479)
+. ..+.++++|++.|+|.|.. ...-+|++|..-.++ |.++++....+..+|.++||.+...+.. .+
T Consensus 127 -----~~-~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d---R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~ 196 (488)
T KOG2325|consen 127 -----NG-VKYLMLVARILTGVGVGNF-AVLRAYIADASTVED---RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF 196 (488)
T ss_pred -----cc-hHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc---hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce
Confidence 11 6678899999999986655 566688888777777 8888888777777777777777655431 10
Q ss_pred ---------chhhHHHHHHHHHHHHHHHHHhhccc
Q 011716 160 ---------GWNCSFKISAVALGLALCIFTIGFPI 185 (479)
Q Consensus 160 ---------gw~~~f~i~~~~~~~~~~~~~~~~~~ 185 (479)
-+..+=|+.+.+.++.+++.....++
T Consensus 197 ~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 197 MILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred EEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 13345566666666666655555554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=110.62 Aligned_cols=164 Identities=11% Similarity=0.059 Sum_probs=109.7
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHH---HHHHHHHhhhcc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLG---LILLTIQAQYSR 79 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~---~~l~~~~~~~~~ 79 (479)
+|++...+|.|+++..|+++.++++....+.+...++.+++|+++|| +|+++....+..+..+. ........
T Consensus 267 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 341 (438)
T TIGR00712 267 RYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVTIAVIVYWMNP---- 341 (438)
T ss_pred HHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHHHHHHHHHhcC----
Confidence 35677889999998899999999999999999999999999999999 76543222232222211 11111110
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhh-HHHHHHHHHHHhhc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAG-GLVAATVMVWIEEN 158 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig-~~ig~~~~~~l~~~ 158 (479)
. .+........++.|++..+..........|.+|+++ |+.+.++.+...++| .++||.+.|.+.++
T Consensus 342 ---------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~ 408 (438)
T TIGR00712 342 ---------A-GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---AGTAAGFTGLFGYLGGSVAASAIVGYTVDF 408 (438)
T ss_pred ---------C-CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh---eeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence 0 022223333444444332222222345678888877 899999988777776 46899999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcc
Q 011716 159 RGWNCSFKISAVALGLALCIFTIGFP 184 (479)
Q Consensus 159 ~gw~~~f~i~~~~~~~~~~~~~~~~~ 184 (479)
.||+..|++..+..+++.+..+..++
T Consensus 409 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 409 FGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998776666655555554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-09 Score=105.56 Aligned_cols=158 Identities=15% Similarity=0.029 Sum_probs=114.6
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMG-TSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~-~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
...+..++|+.+ .|+++++.|++...... ...++.+++|++.|| +|+|+.+..+..+.++...+........
T Consensus 226 ~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~----- 298 (390)
T TIGR02718 226 SGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQAAFW----- 298 (390)
T ss_pred HHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 445667788864 79999999999988764 566778999999999 8999999887766644333222111000
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCC-cchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDH-SNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWN 162 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~ 162 (479)
...+....+....+.+++.|...+...+...+..++ ++ +++.++......++|..+||.++|++.+..||+
T Consensus 299 -----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~ 370 (390)
T TIGR02718 299 -----LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ---AGTDVTAVQSTRDLGELIASSIAGYLTDRFGYA 370 (390)
T ss_pred -----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 000222333444555666777778888887777665 45 788899988899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 011716 163 CSFKISAVALGLALC 177 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~ 177 (479)
..|.+.+++.+++.+
T Consensus 371 ~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 371 GGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887766655544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.5e-09 Score=106.36 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=105.6
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
+...+|.|+++ .|.++.+.+.+.+.+.++..+++++.|+++|| +|||+.+..+..+..+...+.....
T Consensus 250 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~---------- 317 (426)
T PRK12307 250 IFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIP---------- 317 (426)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 45677888875 69999999999999999999999999999999 8999999888877666555443332
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
+. .........+..+.+..+..+..+.++.|.+|++. |+++.++.+...++|..++|.+.|++.+.+|+....
T Consensus 318 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~ 390 (426)
T PRK12307 318 --QD--NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV---RGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAAL 390 (426)
T ss_pred --cc--cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH---HhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHH
Confidence 00 11112122222223333344566778899999888 999999998899999999999999999988876543
Q ss_pred H
Q 011716 166 K 166 (479)
Q Consensus 166 ~ 166 (479)
+
T Consensus 391 ~ 391 (426)
T PRK12307 391 T 391 (426)
T ss_pred H
Confidence 3
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.1e-09 Score=108.37 Aligned_cols=156 Identities=12% Similarity=0.072 Sum_probs=138.0
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
+...+|.+.++.+|.++...|++.+++.++..++.++.+++.+| +++++++..+.++++++.+..++.+
T Consensus 237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~~---------- 305 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALSP---------- 305 (524)
T ss_pred HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcch----------
Confidence 44567888888999999999999999999999999999999999 8999999999999998888888876
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
+.+...+..++.|++.....+..++.+.+..|++. |++.++++.+....+..+|.++.|.+.+.+|-+..+
T Consensus 306 ------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~---~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al 376 (524)
T PF05977_consen 306 ------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV---RGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTAL 376 (524)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 66677788889999999998899999999999888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 011716 166 KISAVALGLALCIFTI 181 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~ 181 (479)
.++++..+++.++...
T Consensus 377 ~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 377 LIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888776665555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=109.39 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=107.5
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCc
Q 011716 11 VAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSH 90 (479)
Q Consensus 11 ~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (479)
+.|.+..++ ++.+.+++.....++..++.++.|+++|| +|||+++..+..+..++.++..+..
T Consensus 246 ~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~--------------- 308 (437)
T TIGR00792 246 VYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAG--------------- 308 (437)
T ss_pred heeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcc---------------
Confidence 344444555 56677788888889999999999999999 8999999999888888776665542
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhcccCCCcc----hhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchh
Q 011716 91 TQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSN----RRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWN 162 (479)
Q Consensus 91 ~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~ 162 (479)
.+...+.+..++.+++.+...+...++++|..|.++ +++++.+++.+.+..++|..+|+.+.|++.+..||.
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 309 SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 044455667778899999999999999999887543 234688889999999999999999999998877763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-09 Score=108.41 Aligned_cols=157 Identities=10% Similarity=0.007 Sum_probs=101.8
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhH-------HHHHHHHHHHHHHHHHHHHhhh
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFT-------TFILFCTIELLGLILLTIQAQY 77 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~-------~~~~~~~~~~~~~~l~~~~~~~ 77 (479)
+....+|.|+.+++|++..+++...+.+.++..++++++|+++|| +|||+ .......+.++..++.....
T Consensus 270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~-- 346 (476)
T PLN00028 270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQTLGGVFCIWLGRAN-- 346 (476)
T ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHHHHHHHHHHhcccc--
Confidence 345667889988899999999999999999999999999999999 78762 22222222222222222221
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh
Q 011716 78 SRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE 157 (479)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~ 157 (479)
+.....+...+.+++.+...+...++..+..| ++ ++...++.....++|+.++|.+.+ ...
T Consensus 347 --------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~---~g~~~g~~~~~g~lg~~i~~~l~~-~~~ 407 (476)
T PLN00028 347 --------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS---LGVISGLTGAGGNVGAVLTQLLFF-TGS 407 (476)
T ss_pred --------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh---chhhhhhhhccccHHHHHHHHHHH-hcC
Confidence 23334444455555555455555555555443 44 788888876666677766665543 222
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhc
Q 011716 158 NRGWNCSFKISAVALGLALCIFTIGF 183 (479)
Q Consensus 158 ~~gw~~~f~i~~~~~~~~~~~~~~~~ 183 (479)
..+|+..|++.+++.+++.+..++.+
T Consensus 408 ~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 408 SYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred CccHhhHHHHHHHHHHHHHHHHHhee
Confidence 34699999988877777766655543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-09 Score=107.73 Aligned_cols=149 Identities=11% Similarity=0.019 Sum_probs=103.3
Q ss_pred eeehhHHHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHH-HHHHHHHHHHHHHHHHHHhhhccc
Q 011716 3 FLSNAINFVAYFLK-SMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTT-FILFCTIELLGLILLTIQAQYSRL 80 (479)
Q Consensus 3 ~y~~~~~~~~yl~~-~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~-~~~~~~~~~~~~~l~~~~~~~~~~ 80 (479)
++++.+.+|.|+++ ..|.++.+++.......++..++.+++|+++|| ++||+. ......+..++..+ ....
T Consensus 258 ~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~~~~~~-~~~~----- 330 (412)
T TIGR02332 258 LSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAAAGWLL-ASAT----- 330 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHHHHHHH-HHhc-----
Confidence 56678899999976 357788899999999999999999999999999 787764 33333333333322 2111
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
+ +.........+.++|.....+.......|.+|+++ |+.++++.+...++|.+++|.+.|.+.+..|
T Consensus 331 -------~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 331 -------D---HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA---RAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred -------C---CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH---HHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 0 11111112222333333333444455567778777 9999999999999999999999999998775
Q ss_pred -hhhHHHHHHHH
Q 011716 161 -WNCSFKISAVA 171 (479)
Q Consensus 161 -w~~~f~i~~~~ 171 (479)
|++.|++..+.
T Consensus 398 ~~~~~~~~~~~~ 409 (412)
T TIGR02332 398 SFNSGLWFVAAL 409 (412)
T ss_pred CCchhHHHHHHH
Confidence 99998865544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.3e-09 Score=105.09 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=114.3
Q ss_pred ehhHHHHHHh-hhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 5 SNAINFVAYF-LKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 5 ~~~~~~~~yl-~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
+...+++.|+ ++.+|+++.++++....+.++..++++++|++.|| +|||+++..+..+..++..+..+..
T Consensus 276 ~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~-------- 346 (438)
T PRK10133 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG-------- 346 (438)
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 3456778885 56789999999999999999999999999999999 8999999888777766655544432
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-hh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-WN 162 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w~ 162 (479)
+. .......+.|++.+...|...+...|.+|++. +.+.++.. ...+|+.++|.+.|++.+..| -|
T Consensus 347 --------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~----~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~ 412 (438)
T PRK10133 347 --------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT----KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_pred --------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh----ccchhHHh-HHhccchHHHHHHHHHHHhccchH
Confidence 11 22445678999999999999999999887633 33333332 234678888899999999887 78
Q ss_pred hHHHHHHHHHHHHHH
Q 011716 163 CSFKISAVALGLALC 177 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~ 177 (479)
..|++..++.+..+.
T Consensus 413 ~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 413 TAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877666554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.1e-09 Score=108.87 Aligned_cols=138 Identities=9% Similarity=-0.056 Sum_probs=116.1
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
+++...++|.|+++..|.++.++|.....+.++..++.++.|++.|| +|||+.+..+..+..++..++....
T Consensus 275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~~~l~~~~------- 346 (495)
T PRK14995 275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSFYGLAMTD------- 346 (495)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHhc-------
Confidence 34556678889999999999999999999999999999999999999 8999999988888888877665432
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE 157 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~ 157 (479)
...+........++.|+|.|...+.....+.+..|+++ ++.+.+.+....++|..+|+.+.+.+.+
T Consensus 347 ------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 347 ------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK---AAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred ------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh---cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01133345567788999999999989999999899888 8889999999999999999999998865
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-09 Score=109.06 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=116.8
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
+++....+|.|+++.+|.++.++++......++..++.++.|++.|| +|||+.+..+..+.+++..+.....
T Consensus 271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~~~~~~~~------- 342 (485)
T TIGR00711 271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGFYWRAFTF------- 342 (485)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHhccC-------
Confidence 45566778999999999999999999999999999999999999999 8999999999888888877765321
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR 159 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~ 159 (479)
....+........++.|+|.+...+.......+..|+++ ++.+.+......++|..+|+.+.+.+.++.
T Consensus 343 -----~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 343 -----TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK---IARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011134455566788999999888878888888888877 999999999999999999999999887653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.4e-09 Score=103.71 Aligned_cols=150 Identities=12% Similarity=0.033 Sum_probs=114.7
Q ss_pred HHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 9 NFVAYFLKSM---HYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 9 ~~~~yl~~~l---~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
..+.|+.+.+ +.+..+.|.+.+...+...++.+..|++.|| +|||+.+.++..+.+++..+....+
T Consensus 237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~---------- 305 (396)
T TIGR00882 237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFAT---------- 305 (396)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcC----------
Confidence 4566766554 5566778888888888889999999999999 8999999999888888777766554
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhH-HHHHHhhhHHHHHHHHHHHhhccchhhH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNW-FFFSLCAGGLVAATVMVWIEENRGWNCS 164 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ig~~ig~~~~~~l~~~~gw~~~ 164 (479)
+.+.+++.+++.|++..........+..+..|++. ++...+. +....++|.++++.++|++.+.+||+..
T Consensus 306 ------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~ 376 (396)
T TIGR00882 306 ------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL---SATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGA 376 (396)
T ss_pred ------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce---EEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 55566777888888766555555556666666554 5555554 4568899999999999999998999999
Q ss_pred HHHHHHHHHHHHHH
Q 011716 165 FKISAVALGLALCI 178 (479)
Q Consensus 165 f~i~~~~~~~~~~~ 178 (479)
|.+.++...+..++
T Consensus 377 f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 377 YLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHHHH
Confidence 99877776555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.9e-09 Score=103.87 Aligned_cols=152 Identities=11% Similarity=-0.046 Sum_probs=117.8
Q ss_pred HHHHHhh--hhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 9 NFVAYFL--KSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 9 ~~~~yl~--~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
..+.|+. ++.+.+....+.+...+.......+++.|++.|| ++||+.+..++.+..++..+.....+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~---------- 296 (395)
T PRK10054 228 CISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFVIGLVGFIFSGN---------- 296 (395)
T ss_pred hHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHcch----------
Confidence 4455553 2456667777888888877777888899999999 79999999998888888776665321
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
+.+.+.+...+.++|.+...|...+.+.+..|++. ++++++... ...+|.++||.++|++.++.|.+..|+
T Consensus 297 -----~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~---~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~ 367 (395)
T PRK10054 297 -----SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM---KASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFV 367 (395)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc---ceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHH
Confidence 44455667789999999889999999999999877 777777644 566899999999999999999888888
Q ss_pred HHHHHHHHHHHHHH
Q 011716 167 ISAVALGLALCIFT 180 (479)
Q Consensus 167 i~~~~~~~~~~~~~ 180 (479)
+.+....+++++..
T Consensus 368 ~~~~~~~~~~~~~~ 381 (395)
T PRK10054 368 ILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666555554444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-08 Score=99.92 Aligned_cols=148 Identities=10% Similarity=0.022 Sum_probs=109.2
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHH-HHHHHHHHhhhcccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELL-GLILLTIQAQYSRLQPA 83 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~ 83 (479)
+....+++++.+++|+++.+.+.....+.++..++.++.|++.|| .+|+..+. +..+... +..+....+
T Consensus 234 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~~l~~-~~~~~~~~~~~l~~~~~-------- 303 (394)
T PRK10213 234 AFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKLALAG-APLVLAVSALVLTLWGS-------- 303 (394)
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHH-HHHHHHHHHHHHHHHhh--------
Confidence 344555444456789999999999999999999999999999999 55554444 4334333 333333332
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+.+.+.+..++.|++.+...+..++++.+..|+ + .++..+.+....++|..+|+.++|++.+..|++.
T Consensus 304 --------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~ 371 (394)
T PRK10213 304 --------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q---AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTS 371 (394)
T ss_pred --------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 444566678889999999999999889888874 3 3444556666778999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 011716 164 SFKISAVALGL 174 (479)
Q Consensus 164 ~f~i~~~~~~~ 174 (479)
.+...++...+
T Consensus 372 ~~~~~~~~~~~ 382 (394)
T PRK10213 372 PLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHH
Confidence 88876655433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.5e-09 Score=103.96 Aligned_cols=145 Identities=12% Similarity=0.192 Sum_probs=104.2
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHH--HHHHHHHHHHhhhcccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIE--LLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 81 (479)
+++....+.|+.+++|.++.+.+...+.+.++..++.++.|+++||+.+||+......... .++.......
T Consensus 233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 305 (379)
T TIGR00881 233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN------- 305 (379)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC-------
Confidence 3455678889988999999999999999999999999999999998323443332221111 1111111111
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
...+.....+..++.|....+..+....+..|..|+++ |+++.++.....++|..++|.+.|.+.+++||
T Consensus 306 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 375 (379)
T TIGR00881 306 -------PAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA---AGTAAGFVGFFAYLGGILAGLPLGYLADGFGW 375 (379)
T ss_pred -------cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch---hHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence 00133344455566666555556666778899999888 99999999999999999999999999999999
Q ss_pred hhHH
Q 011716 162 NCSF 165 (479)
Q Consensus 162 ~~~f 165 (479)
+..|
T Consensus 376 ~~~f 379 (379)
T TIGR00881 376 AGAF 379 (379)
T ss_pred cccC
Confidence 8764
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=102.07 Aligned_cols=151 Identities=11% Similarity=0.012 Sum_probs=112.4
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
..+|.|+++..+ ++.+.+++.+...+....+..+.+++.||+++.++.+..+..+.+++..+.+..+
T Consensus 229 ~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~------------ 295 (400)
T PRK11646 229 LMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS------------ 295 (400)
T ss_pred HhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh------------
Confidence 456778776555 7788898888877766655555566665536777777788888888877776664
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc---c-hhh
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR---G-WNC 163 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~---g-w~~ 163 (479)
+...+.+...+.++|.+...|..++++.|..|+++ |++.++.+....++|..+||.++|++.++. + ...
T Consensus 296 ----~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~ 368 (400)
T PRK11646 296 ----NLQQLFTLICLFYIGSIIAEPARETLSASLADARA---RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPEL 368 (400)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc---chhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcch
Confidence 44455566777888888889999999999999888 999999999999999999999999998863 2 245
Q ss_pred HHHHHHHHHHHHHHH
Q 011716 164 SFKISAVALGLALCI 178 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~ 178 (479)
.+++.+++.++..+.
T Consensus 369 ~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 369 PWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544444444433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=101.47 Aligned_cols=137 Identities=9% Similarity=0.008 Sum_probs=107.1
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcccc-chhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL-TRFTTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~-Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
++++...+|.|+++ .|.+..+.+.+.+.+.++..+++++.|+++|| + +||+.+..+..+.+++.+.+....
T Consensus 213 ~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~------ 284 (355)
T TIGR00896 213 YYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGLCGLLFAP------ 284 (355)
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHhh------
Confidence 45666788889864 79999999999999999999999999999999 7 577777777777877776666543
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
+.... ....+.|++.|...|...+.+.+..++++ +++...++.+...++|..++|.+.|++.++.|
T Consensus 285 ----------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 285 ----------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA--QAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred ----------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 23467899999999988887776555432 26777788777888899999999999998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.2e-09 Score=103.16 Aligned_cols=129 Identities=13% Similarity=0.022 Sum_probs=102.6
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHH-Hhhhcccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTI-QAQYSRLQPA 83 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~ 83 (479)
.+...+| ++.+++|.++.+.+...+...++..++.+++|+++|| +|||+.+.... +..+...+... ..
T Consensus 268 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~-------- 336 (398)
T TIGR00895 268 FLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLL-LGAVFAVLVGSTLF-------- 336 (398)
T ss_pred HHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHH-HHHHHHHHHHHHhh--------
Confidence 3444555 5667899999999999999999999999999999999 79995554433 33333333322 22
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHH
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWI 155 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l 155 (479)
+.....+..++.|++.+...+...+++.|.+|+++ |++..++......+|..+||.++|++
T Consensus 337 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 337 --------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI---RATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH---HHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 44456677788999999999999999999999888 99999999999999999999999875
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-08 Score=99.42 Aligned_cols=155 Identities=12% Similarity=0.171 Sum_probs=108.2
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFM-GTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~-~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
..+.++.+++|+++++.+++..... .+..++.+++|++.|| +|||+.+..+..+..+..+........+
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~--------- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTP--------- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 4455677789999999999987654 5688999999999999 8999988777766665544332211000
Q ss_pred CCchhHHHHHHHH----HHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 88 PSHTQAAILYTGL----YAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 88 ~~~~~~~~l~~~~----~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+ +.+.+.... +..+++.+...+....++.+.+|.++ ++ .+....++|...++.++|++.+++||+.
T Consensus 301 -~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~ 370 (402)
T PRK11902 301 -K--HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ---YA----LLSALASVGRVYVGPTSGYLVEAYGWPG 370 (402)
T ss_pred -C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 0 223333333 35667777778888888888888655 43 3333446777766778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 011716 164 SFKISAVALGLALCIFTIGF 183 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~~~ 183 (479)
.|.+.+++.++++++.+...
T Consensus 371 ~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 371 FYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99988877777666554433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-08 Score=97.83 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=105.9
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
......|.|+++++|.++.+.+.+.....++..++.++.|++.|| +|||+.+..+..+..++..++......
T Consensus 224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 295 (385)
T TIGR00710 224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLEITAIL------- 295 (385)
T ss_pred HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 344556778888999999999999999999999999999999999 899999998888888777666554210
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHh-hhHHHHHHHHHHHhhccchhh
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLC-AGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-ig~~ig~~~~~~l~~~~gw~~ 163 (479)
............++.|++.+...+.......|..| ++ ++++.+....... +|.+.++.+ +.+.+..+|..
T Consensus 296 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~---~g~~~~~~~~~~~~~g~i~~~~~-~~~~~~~~~~~ 366 (385)
T TIGR00710 296 ----GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV---AGTASALFGTLRLVLGAIVGYLV-SLIHGNTAWPM 366 (385)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc---chHHHHHHHHHHHHHHHHHHHHH-HhccccChHHH
Confidence 00133445556777889999999999888888776 34 6777877655554 455555554 45555445554
Q ss_pred HHHH
Q 011716 164 SFKI 167 (479)
Q Consensus 164 ~f~i 167 (479)
.+..
T Consensus 367 ~~~~ 370 (385)
T TIGR00710 367 SLSC 370 (385)
T ss_pred HHHH
Confidence 4443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=104.52 Aligned_cols=159 Identities=12% Similarity=0.013 Sum_probs=103.5
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHH------------HHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHH
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAI------------MVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLI 69 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~------------i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 69 (479)
.+|++....|.+++ +.|+++.+.+. ......++..++.+++++++|| +|||++++.+..+.+++..
T Consensus 303 ~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~~~~~ 380 (502)
T TIGR00887 303 AFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFILTVLFF 380 (502)
T ss_pred HHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHH
Confidence 35666666777774 67877653321 1223334556678889999999 8999999888888777766
Q ss_pred HHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHH
Q 011716 70 LLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAA 149 (479)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~ 149 (479)
+.++... +.. ....+....+...++..+..+....+.+|.+|.+. |+++.++......+|.+++|
T Consensus 381 ~l~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~---R~~~~g~~~~~~~~~~~~~~ 445 (502)
T TIGR00887 381 VLGFAYN-----------HLS-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY---RSTAHGISAASGKAGAIIGQ 445 (502)
T ss_pred HHHHHHH-----------hcc-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH---HHHHHHHHHHHhhhHHHHHH
Confidence 6655420 000 11111111112222233345666777899999988 99999999999999999999
Q ss_pred HHHHHHhhc----------cchhhHHHHHHHHHHHHHH
Q 011716 150 TVMVWIEEN----------RGWNCSFKISAVALGLALC 177 (479)
Q Consensus 150 ~~~~~l~~~----------~gw~~~f~i~~~~~~~~~~ 177 (479)
.+.+++.+. .++...|++.++..+++.+
T Consensus 446 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 446 FGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred HHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 999998773 3445566666655554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-08 Score=97.12 Aligned_cols=156 Identities=11% Similarity=-0.088 Sum_probs=116.5
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
...++.|+++.+|.++.+.|.+.+.+.++..++.+..+++.|| .++|+++..+.. .++...+.+..+
T Consensus 225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~-~~~~~~~~~~~~----------- 291 (393)
T PRK11195 225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGIL-MGLVVLLMALQH----------- 291 (393)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHH-HHHHHHHHHHHh-----------
Confidence 3455678888899999999999999999999999999999999 799988877753 334333334332
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK 166 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~ 166 (479)
+.+...+..++.|++.+...+..++.+.+..|++. .+++..+..+...++|..++..+.+.+ +..|-+..+.
T Consensus 292 -----~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~--~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 363 (393)
T PRK11195 292 -----SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV--GAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAV 363 (393)
T ss_pred -----HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc--cchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHH
Confidence 44455566778899989888888888887644321 168888999999999999999998866 4567777777
Q ss_pred HHHHHHHHHHHHHHhhc
Q 011716 167 ISAVALGLALCIFTIGF 183 (479)
Q Consensus 167 i~~~~~~~~~~~~~~~~ 183 (479)
+..+..++.......++
T Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 364 IVGFGLLVALAMALLWR 380 (393)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555554444443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-08 Score=113.45 Aligned_cols=147 Identities=14% Similarity=0.042 Sum_probs=121.4
Q ss_pred ehhHHHHHHhhhhcCCChh-hHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 5 SNAINFVAYFLKSMHYPAA-ESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~-~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
.....++.|+.+.+|++.. +.+++.+...++..++.++.|+++|| +++++++.++.++.+++.++.....
T Consensus 250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-------- 320 (1146)
T PRK08633 250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTAP-------- 320 (1146)
T ss_pred HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHhh--------
Confidence 3456778888899999999 99999999999999999999999999 7999999888888887777776654
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh-ccchh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE-NRGWN 162 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~-~~gw~ 162 (479)
+...+++..++.|++.+...+...+++.+..|++. |+++++..++..++|.++++.+++.+.. .+++.
T Consensus 321 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~ 389 (1146)
T PRK08633 321 --------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE---LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPA 389 (1146)
T ss_pred --------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 55567777888999999999999999999999888 9999999999999999888888777654 23455
Q ss_pred hHHHHHHHH
Q 011716 163 CSFKISAVA 171 (479)
Q Consensus 163 ~~f~i~~~~ 171 (479)
..|++.+.+
T Consensus 390 ~~~~~~~~~ 398 (1146)
T PRK08633 390 GLFYLIALV 398 (1146)
T ss_pred HHHHHHHHH
Confidence 556554433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-07 Score=93.24 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHH-HHH
Q 011716 340 IGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSW-CST 418 (479)
Q Consensus 340 i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~ 418 (479)
+..|+...++-++.+...+ ++|..++.=++.++..+..+.+.-+|+...+|+++|.+++|+.. ...
T Consensus 439 ~~lgLa~~~~Rf~~~S~L~-------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~ 505 (618)
T KOG3762|consen 439 MYLGLACNVGRFLYYSYLQ-------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFH 505 (618)
T ss_pred eeehhhHHHHHHHHHHHhc-------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhc
Confidence 6678888888888877753 55656666699999999999999999999999999999999985 666
Q ss_pred hhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 419 SMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 419 ~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
.+|-.+|+.+.|.+.... +-...|..+++.+++.++.+...
T Consensus 506 GlG~g~GslIGG~~v~~f----------------g~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 506 GLGKGLGSLIGGFVVERF----------------GARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred ccCcchhhhhhhhhheee----------------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 789999998888865322 22556888888877776655543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=102.02 Aligned_cols=140 Identities=12% Similarity=0.139 Sum_probs=109.1
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
....+.|+++.+|.++...++......++..++.++.++++|| +|+|+++..+..+..++.++..+..
T Consensus 248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~~----------- 315 (448)
T PRK09848 248 SASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWVS----------- 315 (448)
T ss_pred hhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence 3345566777788877666655555567788899999999999 8999999999988888877665532
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcc----hhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSN----RRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
..+.+.+.+..++.++|.+...+...++.+|..|++| +++.+...+.+.+...+|..+|+.+.+.+.+..||
T Consensus 316 ---~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 316 ---VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1144556667788999999999999999999988665 22357778889999999999999999988765555
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.7e-08 Score=99.71 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=105.6
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHH--------HHHHHHHHHHHHHHHHH
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTF--------ILFCTIELLGLILLTIQ 74 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~--------~~~~~~~~~~~~l~~~~ 74 (479)
++.....+|.|+.+.+|.+..+.++..+...++..++.+++|+++|| +++|+.. ..+......+..+....
T Consensus 277 ~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (465)
T TIGR00894 277 YTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIFNGIGGLGPGIFAYALP 355 (465)
T ss_pred HHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999 6654321 11111111111111111
Q ss_pred hhhcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHH
Q 011716 75 AQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVW 154 (479)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~ 154 (479)
. .. .+.....+...+.+.+.+...+.......|..|. . ++...++.....++|+.++|.+.|+
T Consensus 356 ~------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---~g~~~g~~~~~~~l~~~i~p~l~g~ 418 (465)
T TIGR00894 356 Y------------LS-AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F---LGFIKGITGLPGFIGGLIASTLAGN 418 (465)
T ss_pred H------------cC-CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H---HHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 1 00 0222333344444555555555555555555543 4 8899999999999999999999998
Q ss_pred Hhhcc---chhhHHHHHHHHHHHHHHHHH
Q 011716 155 IEENR---GWNCSFKISAVALGLALCIFT 180 (479)
Q Consensus 155 l~~~~---gw~~~f~i~~~~~~~~~~~~~ 180 (479)
+.+.. +|+.+|.+.++..+++.+...
T Consensus 419 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 419 ILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred eeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 87642 488888887777666655443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.9e-08 Score=94.58 Aligned_cols=153 Identities=13% Similarity=0.111 Sum_probs=124.6
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
+.+.-..|-.+++|++..|..++-....+...++++++|+|.|| +|.|+++..++.+..+..+..-+..
T Consensus 271 il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~---------- 339 (438)
T COG2270 271 ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLE---------- 339 (438)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHcc----------
Confidence 33445567778999999999999999999999999999999999 8999999999998888776665553
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-hhhH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-WNCS 164 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w~~~ 164 (479)
.-..+++.-.+.|...|+.++.+-++.++..|+++ -+++++++....-.....||...+.+.+..| -|..
T Consensus 340 ------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k---~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 340 ------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK---EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred ------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc---ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 22244445568899999999999999999999988 8889999999999999999999999887654 5666
Q ss_pred HHHHHHHHHHHHHH
Q 011716 165 FKISAVALGLALCI 178 (479)
Q Consensus 165 f~i~~~~~~~~~~~ 178 (479)
+..-.++..+++++
T Consensus 411 ~~~i~vll~iGl~~ 424 (438)
T COG2270 411 VLSIIVLLLIGLLL 424 (438)
T ss_pred HHHHHHHHHhhHhh
Confidence 66545555555544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.2e-08 Score=111.70 Aligned_cols=164 Identities=8% Similarity=-0.067 Sum_probs=120.1
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhh--hc-cc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQ--YS-RL 80 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~--~~-~~ 80 (479)
+++.+.+|.|+++.+|.++.+.|++.+.+.++..++.++.|+++|| .++++.+..+.++.+++.+.+++... .. ..
T Consensus 242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (1140)
T PRK06814 242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLFGLDLAFASSSVPAEPA 320 (1140)
T ss_pred HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHHHHHHHhcccccccccc
Confidence 3456788999999999999999999999999999999999999998 67777666666555555544433200 00 00
Q ss_pred -ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh-c
Q 011716 81 -QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE-N 158 (479)
Q Consensus 81 -~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~-~ 158 (479)
......-....+.+.+++..++.|++.+...+..++++.+..|++. ++++++......++|..+++.+.+.+.+ .
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 321 QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH---RARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc---ceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000000000144566777888999999999999999999999999 9999999999999999999999998874 4
Q ss_pred cchhhHHHHHHHH
Q 011716 159 RGWNCSFKISAVA 171 (479)
Q Consensus 159 ~gw~~~f~i~~~~ 171 (479)
.++...|++.+.+
T Consensus 398 ~~~~~~~~~~~~~ 410 (1140)
T PRK06814 398 FSIPWIILFIALA 410 (1140)
T ss_pred cCHHHHHHHHHHH
Confidence 4666666654443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-07 Score=93.78 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=91.5
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
...+.|+.+++|+++.+.+.....+.++..++.++.|++.|| +|||+++..+..+..++..+.....
T Consensus 224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~------------ 290 (392)
T PRK10473 224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALSP------------ 290 (392)
T ss_pred HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 334567778899999999999999999999999999999999 8999999999988888887776653
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKI 167 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i 167 (479)
..........+.+.|.+...+.. ...+..|.++ |+... +....++..+|+.+++++.+..|+.....+
T Consensus 291 ----~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~---~~g~~---~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~ 358 (392)
T PRK10473 291 ----SHAVSLFGITLICAGFSVGFGVA--MSQALGPFSL---RAGVA---SSTLGIAQVCGSSLWIWLAAVLGISAWNML 358 (392)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcc---cccHH---HHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 22222333333333333333332 2233334433 33222 224456777777788888777777654444
Q ss_pred HHH
Q 011716 168 SAV 170 (479)
Q Consensus 168 ~~~ 170 (479)
.+.
T Consensus 359 ~~~ 361 (392)
T PRK10473 359 IGI 361 (392)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.71 E-value=6e-08 Score=96.27 Aligned_cols=130 Identities=14% Similarity=0.073 Sum_probs=99.0
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFM-GTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~-~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
++.+.+.++.|+++ +|+++++.+.+..... +...++.+++|+++|| +|||+.+..+.++.+++..+..+........
T Consensus 225 ~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
T TIGR00901 225 DSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALTNAGFVWLASNGHHD 302 (356)
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45667788899876 9999999999888775 5778999999999999 8999999988888877766554431000000
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHh
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLC 142 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 142 (479)
. ....+.+.+....++.+++.+...+...+++.|.+|+++ |++.++.++...|
T Consensus 303 ----~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~ 355 (356)
T TIGR00901 303 ----G-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF---GATQMALLSSLSA 355 (356)
T ss_pred ----c-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHh
Confidence 0 000134556677888899999999999999999999999 9999998766554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=93.80 Aligned_cols=140 Identities=18% Similarity=0.166 Sum_probs=116.3
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
..+..+.|.+..+|.+ ...+.....+.+...++.++.++++|| +|+|+++..+..+.+++.++..+...
T Consensus 244 ~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~--------- 312 (428)
T PF13347_consen 244 MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALGFLLLFFLGP--------- 312 (428)
T ss_pred hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHHHHHHHHHHh---------
Confidence 3445566666667776 566778888899999999999999999 89999999999999999988777741
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcc----hhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSN----RRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
.+.+.+++...+.|++.+...+...++++|..+.+| +++-+..++.+.....+|..+++.+.+.+.+..|+
T Consensus 313 -----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 313 -----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred -----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 167788888999999999999999999999999765 23457777889999999999999999988765554
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=86.75 Aligned_cols=142 Identities=15% Similarity=0.081 Sum_probs=110.6
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHH-HHHHHHHHhhhcccccccCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELL-GLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~ 86 (479)
+.-+.+.++++|+|+.+++.+.+.......+.+++.|.++|| +||+...+.+..+..+ +-..+.+..
T Consensus 285 ~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~tl~~H~~l~Ft~----------- 352 (459)
T KOG4686|consen 285 TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACILTLLGHSGLFFTF----------- 352 (459)
T ss_pred hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHHHHHHhhhHHhhh-----------
Confidence 344567889999999999999999999999999999999999 7999887776555554 444444442
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc---hhh
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG---WNC 163 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g---w~~ 163 (479)
+.=+.+..+.|+.......+..+.++...|+++ .+.+++..+...|+|-++.|.+.|.+.++-| |--
T Consensus 353 -------lsPy~~m~~lGLsysllAcslWP~va~~vpE~q---LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le 422 (459)
T KOG4686|consen 353 -------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ---LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLE 422 (459)
T ss_pred -------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH---hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHH
Confidence 122345667777777666667788888889888 9999999999999999999999999988654 444
Q ss_pred HHHHHHHH
Q 011716 164 SFKISAVA 171 (479)
Q Consensus 164 ~f~i~~~~ 171 (479)
+|.+....
T Consensus 423 ~ffl~~~~ 430 (459)
T KOG4686|consen 423 AFFLIIGL 430 (459)
T ss_pred HHHHHHHH
Confidence 55544444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-07 Score=91.61 Aligned_cols=166 Identities=9% Similarity=-0.030 Sum_probs=107.2
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
.+....+|.|++++++ ..+.........+...+.+|++|+++|| +|+||++..+.+...+........- |.
T Consensus 269 vg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~~~~~~l~l--p~---- 339 (462)
T PRK15034 269 IGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIFSALLFLTL--PG---- 339 (462)
T ss_pred HHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHh--cc----
Confidence 3455578888877663 3333222334467788999999999999 8999999999887777664433321 10
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCC------c-------c-----hhhhhhhhhHHHHHHhhhH
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDH------S-------N-----RRLISAFFNWFFFSLCAGG 145 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~------~-------~-----~~~~~~~~~~~~~~~~ig~ 145 (479)
....+...+.+..+...++.|.-..+...++.+.+|+ + + +++-+...++......+|+
T Consensus 340 ----~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Gg 415 (462)
T PRK15034 340 ----TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGG 415 (462)
T ss_pred ----ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHccc
Confidence 1112444455544444455555555666666666663 0 0 2246677788888888888
Q ss_pred HHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHHHhh
Q 011716 146 LVAATVMVWIEENR-GWNCSFKISAVALGLALCIFTIG 182 (479)
Q Consensus 146 ~ig~~~~~~l~~~~-gw~~~f~i~~~~~~~~~~~~~~~ 182 (479)
.+-|.+.|...+.. ++...|+...+..++++++.|..
T Consensus 416 f~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 416 FFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred chhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777776654 48888888887777666665543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-08 Score=95.41 Aligned_cols=130 Identities=16% Similarity=0.233 Sum_probs=109.3
Q ss_pred eeehhHHHHHHhhhhcCCC-hhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 3 FLSNAINFVAYFLKSMHYP-AAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~-~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
++.....++.|+.+++|.+ ..+.+.+.+...+...++.++.|+++|| +|+|+..........++..........+
T Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 297 (352)
T PF07690_consen 222 FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALGLLLLPFSS--- 297 (352)
T ss_dssp HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCSHHHC---
T ss_pred HHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 3456678888989999999 7999999999999999999999999999 8998888877777777666655443111
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHH
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAA 149 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~ 149 (479)
+....++..++.|++.+...+...+++.|..|+++ ++++.+......++|..+||
T Consensus 298 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 298 ----------SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY---RGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH---HHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHHHHCC
Confidence 34566667788999999999999999999999888 99999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-07 Score=95.88 Aligned_cols=131 Identities=9% Similarity=-0.094 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHhcc
Q 011716 29 VNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVG 108 (479)
Q Consensus 29 ~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g 108 (479)
.....+....+.++.+++.|| +|||+.+..+.++.+++.++...... . ......+..++.+++.+
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~-------------~-~~~~~~~~~~~~~~~~~ 425 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV-------------D-LYFLRTALAVLGKFGIT 425 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC-------------C-chHHHHHHHHHHHHHHH
Confidence 334456677888999999999 89999999998888888777666531 0 11233344455666677
Q ss_pred ccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Q 011716 109 GVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIF 179 (479)
Q Consensus 109 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 179 (479)
...+..+.+.+|.+|++. |+.+.++......+|.+++|.+.+ +. ..++...+.+.++..+++.+..
T Consensus 426 ~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 426 SAFQMVYLYTAELYPTVV---RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILT 491 (505)
T ss_pred HHHHHHHHHhcccccHHH---HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHH
Confidence 778888999999999888 999999999999999999999988 44 3566667776666655554443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-07 Score=85.83 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=119.9
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ 81 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (479)
.||.++..+|.++. +-|+|+.++|+.++...+......+.+-.+++|.-.+|+..+....++.+|.+.+.+.+.
T Consensus 223 ~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~----- 296 (395)
T COG2807 223 LYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG----- 296 (395)
T ss_pred HHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-----
Confidence 47999999999987 569999999999999999999999999999998677888888888888888887777641
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc-c
Q 011716 82 PAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR-G 160 (479)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~-g 160 (479)
+...+ +.++.|+|.|+.+|....++.+..++.+ +-++..++.+-...+=+.+||.+.|++.|.. +
T Consensus 297 ----------~~~~l--w~~llG~G~G~~F~laL~li~~rs~~a~--~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs 362 (395)
T COG2807 297 ----------QLPIL--WALLLGLGQGGAFPLALTLILLRSSDAA--IAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS 362 (395)
T ss_pred ----------hHHHH--HHHHHhCccchHHHHHHHHHHhhcCChH--HHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence 22222 2589999999999999999999887655 2444455544455566777899999998866 5
Q ss_pred hhhHHHHHHHHHH
Q 011716 161 WNCSFKISAVALG 173 (479)
Q Consensus 161 w~~~f~i~~~~~~ 173 (479)
|+...+.-....+
T Consensus 363 w~~~~~~l~~~~i 375 (395)
T COG2807 363 WSAPLVLLALATL 375 (395)
T ss_pred hHHHHHHHHHHHH
Confidence 8876665444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-06 Score=88.93 Aligned_cols=138 Identities=9% Similarity=-0.052 Sum_probs=99.8
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
......|.|++ +.|.++.+.++....+..+..++.+..+++.|| +|||+.+.......+++...+.......
T Consensus 221 ~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 292 (401)
T PRK11043 221 AWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLLS------ 292 (401)
T ss_pred HHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 34455677765 589999999998888888999999999999999 7999987666655555544332221000
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR 159 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~ 159 (479)
..+.........+.+++.+...|...+...|..| ++ ++++.+++......++..++.+.+.+.+..
T Consensus 293 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 293 -----HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA---TGKAAALQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred -----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc---ChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 0023344455667788888889988888877765 35 788888888777888888888888887643
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.5e-07 Score=75.67 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=95.5
Q ss_pred cceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHH
Q 011716 306 LTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGV 385 (479)
Q Consensus 306 ~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (479)
.+...+..++.+++.||.++|.. +..+..+..++.+..... .+.+......++.++
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~-----------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~ 63 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPV-----------LLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGF 63 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHH-----------HHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHH
Confidence 44556677788888888776643 555666666555555432 245556667788999
Q ss_pred HHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHH
Q 011716 386 SDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILN 465 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 465 (479)
+.+...+....++.|..|++.|++..+..+....+|..+++.+.+.+.+ ..+++..|++.+.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 127 (141)
T TIGR00880 64 GAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ----------------FLGWRAPFLFLAILA 127 (141)
T ss_pred HHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------------ccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877541 122345567777666
Q ss_pred HHHHHHHhhhhc
Q 011716 466 FINFLNYIYWAK 477 (479)
Q Consensus 466 l~~~~~~~~~~~ 477 (479)
++..+....+.+
T Consensus 128 ~~~~~~~~~~~~ 139 (141)
T TIGR00880 128 LAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHhhcCC
Confidence 666555544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.9e-07 Score=88.85 Aligned_cols=129 Identities=12% Similarity=0.016 Sum_probs=84.6
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
...+.++.+++|+++.+.++......++..++.++.|++.|| +|||+.+..+..+..+..+........+
T Consensus 215 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 284 (377)
T PRK11102 215 TAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLVVSALLD--------- 284 (377)
T ss_pred HcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 344566777899999999999999999999999999999999 8999999988876554332222221000
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHH-HHhhhHHHHHHHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFF-SLCAGGLVAATVMV 153 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ig~~ig~~~~~ 153 (479)
.+.....+...+.+.+.+...+.....+.|..| ++ +++..+.... ...+|..+++.+++
T Consensus 285 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 285 ---LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM---AGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc---chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 023333344444455555566666677777666 45 5666666432 33456666666543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-07 Score=96.54 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=131.2
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccc--hhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLT--RFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~G--rk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
-...++.|.. ..+.+..+++.++++......+++++.|+++|+ .. ++.+..+++++.+++...++++.
T Consensus 317 p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~~~~~p~~~-------- 386 (509)
T KOG2504|consen 317 PFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLARLFLPFAT-------- 386 (509)
T ss_pred HHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 3445666655 899999999999999999999999999999999 67 45566666666666777777775
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-hh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-WN 162 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w~ 162 (479)
++..++..-.+.|+..|.........+.|..+.++ ...++++......++.++||.+.|++.+..| |.
T Consensus 387 --------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~---l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~ 455 (509)
T KOG2504|consen 387 --------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK---LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD 455 (509)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh---cchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence 66678888889999999998888889999999988 9999999999999999999999999988877 99
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 011716 163 CSFKISAVALGLALCIFTIG 182 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~~~~ 182 (479)
..|+..++..+++....+..
T Consensus 456 ~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 456 HAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred eehhhcChHHHHHHHHHHHh
Confidence 99999888877776554444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.1e-07 Score=92.01 Aligned_cols=125 Identities=12% Similarity=0.088 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHH
Q 011716 22 AAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLY 101 (479)
Q Consensus 22 ~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (479)
+...+.......+...++.+++++++|| +|||+.+..+..+..++.....+.. ..+.+.+++..+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 327 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIP--------------PSNVWLIFALNI 327 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhC--------------cchHHHHHHHHH
Confidence 3334455556667778888999999999 8999999988776665443322221 114555667778
Q ss_pred HHHHhccccccchhhhhcccCCCcc----hhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 102 AMATGVGGVKAALPAHGADQLDHSN----RRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 102 l~g~g~g~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
+.|++.+...+...++++|..|.+| +++.+..++.+.+..++|..+|+.++|++.+..|+
T Consensus 328 i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 328 LFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999998554 22335567888889999999999999999877776
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.4e-07 Score=91.36 Aligned_cols=130 Identities=14% Similarity=0.014 Sum_probs=98.0
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHH
Q 011716 20 YPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTG 99 (479)
Q Consensus 20 ~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (479)
-++...+.+.....++..++.++.++++|| +|||+++..+..+..++.+......-. ...+.+.+.+.
T Consensus 263 ~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~ 330 (473)
T PRK10429 263 GDADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLA-----------APHNALLIVIA 330 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhcc-----------CchhHHHHHHH
Confidence 355666677776678888999999999999 899999998888777666554332100 01144455666
Q ss_pred HHHHHHhccccccchhhhhcccCCCcc----hhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 100 LYAMATGVGGVKAALPAHGADQLDHSN----RRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 100 ~~l~g~g~g~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
.++.+++.+...+...++++|..|.+| +++.+..++.+.+...+|..+|+.+.|++.+..||
T Consensus 331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 778889999999999999999988654 22345577889999999999999999998876666
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=86.60 Aligned_cols=151 Identities=14% Similarity=0.015 Sum_probs=99.0
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchh---HHHHH-HHHHHHHHHHHHHHHhhh
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRF---TTFIL-FCTIELLGLILLTIQAQY 77 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk---~~~~~-~~~~~~~~~~l~~~~~~~ 77 (479)
.+|++.+.+|.|++ +.|++.. .+........... +..++++|| ..|| +.... ...+.++.....+...
T Consensus 207 ~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~~~a~~~~~~~~~~-- 278 (368)
T TIGR00903 207 LFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAALLIAAFFLALAFEL-- 278 (368)
T ss_pred HHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 46788899999996 4678764 4555444444333 445788888 5543 33232 3333333333333221
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh
Q 011716 78 SRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE 157 (479)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~ 157 (479)
+.........+.+++.....+...++.+|.+|++. |+++.++.+...++|+..+|.+.+.+..
T Consensus 279 --------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---rgt~~G~~~~~g~~~~~~~~~~~~~~~~ 341 (368)
T TIGR00903 279 --------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---HGKAAGAIGFTSRAISVALALAAMLFIS 341 (368)
T ss_pred --------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh---cCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 12233344455667777777888899999999988 9999999999999999999999887763
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 011716 158 NRGWNCSFKISAVALGLALCIF 179 (479)
Q Consensus 158 ~~gw~~~f~i~~~~~~~~~~~~ 179 (479)
|.+..|.+.+...+++.+..
T Consensus 342 --~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 342 --SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred --CHHHHHHHHHHHHHHHHHHH
Confidence 66677776666655554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.5e-06 Score=81.36 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=110.0
Q ss_pred hhhcCCCh--hhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchh
Q 011716 15 LKSMHYPA--AESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQ 92 (479)
Q Consensus 15 ~~~l~~~~--~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (479)
..+++.+. .+.+++.+.+.+...++.++.|.++|| +|||+.+..+.....++.+++++..+ ..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 93 (338)
T COG0477 29 LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN--------------VG 93 (338)
T ss_pred HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc--------------ch
Confidence 34555555 578999999999999999999999999 69999888888776666666666541 24
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhcccCCC-cchhhhhhhhhHHHH-HHhhhHHHHHHHHHHHhhc--cchhhHHHHH
Q 011716 93 AAILYTGLYAMATGVGGVKAALPAHGADQLDH-SNRRLISAFFNWFFF-SLCAGGLVAATVMVWIEEN--RGWNCSFKIS 168 (479)
Q Consensus 93 ~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~-~~~ig~~ig~~~~~~l~~~--~gw~~~f~i~ 168 (479)
...+.+.|..+|++.+...|...+++.|..|+ ++ |+...+.... ...+|..+++.+++.+... .+|+..|.+.
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATE---RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA 170 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 67888899999999999999999999999987 34 7777777766 5778888888777777653 5788866655
Q ss_pred HHHH
Q 011716 169 AVAL 172 (479)
Q Consensus 169 ~~~~ 172 (479)
....
T Consensus 171 ~~~~ 174 (338)
T COG0477 171 ALLG 174 (338)
T ss_pred HHHH
Confidence 5443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=88.41 Aligned_cols=147 Identities=11% Similarity=0.060 Sum_probs=108.6
Q ss_pred ehhHHHHHHhhhh-cCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 5 SNAINFVAYFLKS-MHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 5 ~~~~~~~~yl~~~-l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
++.++++.|+++. .+.+....+...+.+..+..++++++|++.|| +++||++.++..+..+..++....+
T Consensus 250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~ll~~~~~-------- 320 (410)
T TIGR00885 250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALCLGSIFAG-------- 320 (410)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 3456678887642 25555556667777788899999999999999 8999998888877777777666553
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhcc----
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENR---- 159 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~---- 159 (479)
+. .......+.|+..++++|+..+...+..+++. ......+. ...+|+++.|.+.|++.|+.
T Consensus 321 --------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~---~~~s~~l~--~~~~Gga~~p~l~G~~~d~~~~~~ 386 (410)
T TIGR00885 321 --------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT---KYGAAGLV--MAIIGGGIVPPLQGFIIDMKEIAA 386 (410)
T ss_pred --------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhHHHHH--HHHhccchHHHHHHHHHHHhcccc
Confidence 22 23455678888899999999999999998655 32222222 23399999999999999954
Q ss_pred --chhhHHHHHHHHHHH
Q 011716 160 --GWNCSFKISAVALGL 174 (479)
Q Consensus 160 --gw~~~f~i~~~~~~~ 174 (479)
+.+..|+++.++.+.
T Consensus 387 ~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 387 APAVNTSFILPLLCFAV 403 (410)
T ss_pred cCccchHHHHHHHHHHH
Confidence 478889887766543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-06 Score=84.50 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=120.9
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
..+.+.|+++.-|.+....+.+.+...+...+.-...+++-.| +|.|+++.++....++=..+.+..+.
T Consensus 227 ~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~---------- 295 (400)
T PF03825_consen 227 YTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSD---------- 295 (400)
T ss_pred HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcC----------
Confidence 3667788875444777888888888888899999999999999 89999999999999988777777621
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHH-HHhhhHHHHHHHHHHHhhccchh---
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFF-SLCAGGLVAATVMVWIEENRGWN--- 162 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ig~~ig~~~~~~l~~~~gw~--- 162 (479)
+.............++|+..|...++...++.+..|++. |.++.+++.. ...+|.++|..++|++.+++|-+
T Consensus 296 -~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~---~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 296 -PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL---RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred -CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 111122233444567999999999999999999999988 7888887554 56799999999999999987644
Q ss_pred ---hHHHHHHHHHHHHHHHHHhh
Q 011716 163 ---CSFKISAVALGLALCIFTIG 182 (479)
Q Consensus 163 ---~~f~i~~~~~~~~~~~~~~~ 182 (479)
..+.+.++..++..+.++..
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555544444444443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=75.09 Aligned_cols=153 Identities=10% Similarity=0.058 Sum_probs=116.0
Q ss_pred HHHHHHhhhh-cCCChhhHH-HHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 8 INFVAYFLKS-MHYPAAESA-IMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 8 ~~~~~yl~~~-l~~~~~~~g-~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
+++.+|+.+. .|++..|.. -+.-+..-.+....++...+.|. +|.|++++.+.+-..+...++-+.+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 5678899886 899999976 44445566777888999999999 8999999998888888888877776
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh--ccchhh
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE--NRGWNC 163 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~--~~gw~~ 163 (479)
++..+-+..+..|++.+. ..+..+++=...|+++ -+++.+....+.-+|-.++.++|-.+.. ..+++.
T Consensus 93 ------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~---yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~ 162 (412)
T PF01770_consen 93 ------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH---YQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQ 162 (412)
T ss_pred ------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 777888888888877665 3455566555556555 7888888888888888888888776654 345677
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011716 164 SFKISAVALGLALCIFTI 181 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~ 181 (479)
..+++.....+++++.++
T Consensus 163 L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 163 LNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777776666655444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.3e-08 Score=94.01 Aligned_cols=142 Identities=12% Similarity=0.134 Sum_probs=115.9
Q ss_pred CcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHH
Q 011716 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWL 376 (479)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (479)
..+.++....+..+++.|+++++.||+.|++. +..|..+..++.+..++.+ +.|.+
T Consensus 69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-----------~~vG~~iW~~Av~~~~fs~-------------~Fwq~ 124 (493)
T KOG1330|consen 69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-----------IAVGIFIWTLAVFASGFSN-------------HFWQV 124 (493)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhcCcceE-----------EeeHHHHHHHHHHHHHHHH-------------HHHHH
Confidence 34556666677888999999999999888866 8899999998888887753 56778
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHH
Q 011716 377 VWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDL 456 (479)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
++.-.+.|+||....|..+.++.+.+|++.|++..+++++...+|..+|......+.+.+ .++++
T Consensus 125 ~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---------------~~Wr~ 189 (493)
T KOG1330|consen 125 LLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---------------FWWRW 189 (493)
T ss_pred HHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc---------------cceEE
Confidence 888899999999999999999999999999999999999999999999877776664322 22556
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 011716 457 FYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 457 ~f~~~~~~~l~~~~~~~~~~~ 477 (479)
.|...+++++++.++.+++.+
T Consensus 190 af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 190 AFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred EEEeehHHHHHHHHHHHhhcc
Confidence 688888888877766665543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.4e-06 Score=83.47 Aligned_cols=139 Identities=10% Similarity=-0.015 Sum_probs=96.7
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRP 88 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (479)
..+.++++.+|.++.+.++.......+..++.++.+++.|| +||+...... ...++.+....... .
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~~--~~~~~~~~~~~~~~-----------~ 294 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQSVI--CCLLAGLLMWIPGW-----------F 294 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHH-----------h
Confidence 34557777799999999999888888888999999999999 6744333222 22222221111100 0
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 89 SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 89 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
...+.+.+.....+.++|.+...|...++..|..|+ + ++...+......++|..+++.+++++.+...+....
T Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~---~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 367 (394)
T PRK11652 295 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L---AGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGL 367 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c---chHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 001334566677889999999999999999998873 4 677788888888999999999999887654444333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-07 Score=81.50 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=100.5
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCch
Q 011716 12 AYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHT 91 (479)
Q Consensus 12 ~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (479)
.|+.+.+|+...|+|.+..+-.....+...+.|-++|| -|||+ ++..+.+.++++.+.. +++
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKr----acvtycitYiLsCiTK------------hSp- 122 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKR----ACVTYCITYILSCITK------------HSP- 122 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hcccc----ceeeehHHHHHHHHhh------------cCC-
Confidence 35556789999999988888878888888899999999 89999 5567777777777764 111
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhh-cccCCCcc-hhhh-hhhhhH-HHHHHhhhHHHHHHHHHHHhhcc--chhhHH
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHG-ADQLDHSN-RRLI-SAFFNW-FFFSLCAGGLVAATVMVWIEENR--GWNCSF 165 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i-~~~~~~~~-~~~~-~~~~~~-~~~~~~ig~~ig~~~~~~l~~~~--gw~~~f 165 (479)
++-.++++|.+-|+..+....+..+.. +|.-+++. ..+. ..-++- ...+..+-++++.+.+-.+.+.. |.-.+|
T Consensus 123 qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPF 202 (454)
T KOG4332|consen 123 QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPF 202 (454)
T ss_pred ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCch
Confidence 445789999999999888887776643 44432222 1111 111111 22344555666666666666654 455778
Q ss_pred HHHHHHHHHHHHHHH
Q 011716 166 KISAVALGLALCIFT 180 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~ 180 (479)
-.+++...++..+..
T Consensus 203 dAAacfLaigmAvil 217 (454)
T KOG4332|consen 203 DAAACFLAIGMAVIL 217 (454)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877777666655544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-05 Score=73.48 Aligned_cols=159 Identities=7% Similarity=0.045 Sum_probs=108.1
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRR 87 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (479)
+.....+++++|+|.+|...+-.+-.++..+ .++.|.+.|+ +|++.++.++.....+|+.++-++-+ ...
T Consensus 22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~--~~i------ 91 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVS--GRI------ 91 (250)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHh--Ccc------
Confidence 4556778899999999999999999999886 5888999999 89999999999999999988776631 111
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKI 167 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i 167 (479)
...+.+.+.+..++.+.|.+....+......+.||+ + |+.+.++.-....+++.+=..+...+.+.-.-+..+.+
T Consensus 92 -~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~---RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~l 166 (250)
T PF06813_consen 92 -PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S---RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFL 166 (250)
T ss_pred -CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c---cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHH
Confidence 112455666666666666665555655666678874 6 78888887666667666655555444443222333334
Q ss_pred HHHHHHHHHHHHHh
Q 011716 168 SAVALGLALCIFTI 181 (479)
Q Consensus 168 ~~~~~~~~~~~~~~ 181 (479)
+.....++++....
T Consensus 167 a~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 167 AVLPAVVCLVAMFF 180 (250)
T ss_pred HHHHHHHHHHHhhh
Confidence 44334444443333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=86.78 Aligned_cols=125 Identities=16% Similarity=0.058 Sum_probs=92.1
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
++++...++.|+++.+|.++.+++...+.+.+...++.+++|+++|| +|||+.+..+......+..+..+..
T Consensus 241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~------- 312 (366)
T TIGR00886 241 FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGAFLVVLGL------- 312 (366)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHHHHHHhcC-------
Confidence 34566778899999999999999999999999999999999999999 8999888888777776666655432
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhh
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAG 144 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig 144 (479)
.++.+.....+...+.+++.|...+...+++.|..| ++ ++...++.....++|
T Consensus 313 -----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~---~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 313 -----VSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA---TGAVSGLVGAIGNLG 365 (366)
T ss_pred -----CCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh---cccHHHHHHHhccCC
Confidence 100023334444455555666666677777888776 34 788888877766665
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=80.39 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=109.7
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhH
Q 011716 14 FLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQA 93 (479)
Q Consensus 14 l~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (479)
+-++.|++..++.+..........+..+++.++-|| +|||+.++.+..+..+..+++.....+-+.. ..+-.
T Consensus 296 i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~ 367 (485)
T KOG0569|consen 296 IFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALFLSNSF-------GSWLS 367 (485)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHH
Confidence 335789999999999999999999999999999999 8999999999999998877766553211100 00111
Q ss_pred HHHHHHHHHHHHhcc-ccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 011716 94 AILYTGLYAMATGVG-GVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVAL 172 (479)
Q Consensus 94 ~~l~~~~~l~g~g~g-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~ 172 (479)
...++..++..++.+ +.-|...-+.+|.+|++. |..+.++......+...+-......+.+.+|- ..|.+..+..
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~---R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~ 443 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA---RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPL 443 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHH
Confidence 122333333333322 335788889999999998 88888887666666666666666666666663 4555555555
Q ss_pred HHHHHHHHhhcccc
Q 011716 173 GLALCIFTIGFPIY 186 (479)
Q Consensus 173 ~~~~~~~~~~~~~~ 186 (479)
.+..+..++..|+.
T Consensus 444 ~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 444 AIFLIYLYRYLPET 457 (485)
T ss_pred HHHHHHHHHhCccc
Confidence 55555555555553
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-05 Score=79.39 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=112.4
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 011716 10 FVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPS 89 (479)
Q Consensus 10 ~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 89 (479)
...|.+-.+|.+..+..+....+..+..++.++..++++| +|+|+++.++.++..++..+.-+.+
T Consensus 259 ~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~-------------- 323 (467)
T COG2211 259 MVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTP-------------- 323 (467)
T ss_pred hheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhc--------------
Confidence 3445566778888888888888888888889999999999 8999999999999999998887774
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhcccCCCcc--hhhh--hhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 90 HTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSN--RRLI--SAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 90 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~--~~~~--~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
..+....++..++.++|.+...+...++++|..+.+| .++| +-.++.+....-+|.+++..+.|++.+..|+
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2267788888899999999999999999999998777 2223 4455667888888999999888888765544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.5e-06 Score=81.05 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=120.9
Q ss_pred HHHHhhhhcC---CChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 10 FVAYFLKSMH---YPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 10 ~~~yl~~~l~---~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+.|.+..++ .++...|.+.+.-.....+.-.+..++-+| +|.|+.++++..+.++=..++++++
T Consensus 243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~----------- 310 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFAT----------- 310 (412)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhc-----------
Confidence 4566654333 334557777888888899999999999999 8999999999999999889998887
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhH-HHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNW-FFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
+.+.+.+.+.+.++-.+....+...++++.+|++- ..+.... ......+|..+.+.++|++.|+.|++..|
T Consensus 311 -----~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl---sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~ty 382 (412)
T PF01306_consen 311 -----NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL---SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTY 382 (412)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG---HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH---HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHH
Confidence 77789999999999999999999999999999866 5555555 35677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 011716 166 KISAVALGLALCIFTIGF 183 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~ 183 (479)
++-+...+...++..+..
T Consensus 383 limg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 383 LIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHheeee
Confidence 877666555544444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00022 Score=71.90 Aligned_cols=104 Identities=9% Similarity=-0.020 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHhcc
Q 011716 29 VNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVG 108 (479)
Q Consensus 29 ~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g 108 (479)
.++-.....+.+++++.+-|+ .|.|..+.++...+..-....-.. |-+.++..-.+.|+|.+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~-----------------N~y~~yfssallG~Gaa 117 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP-----------------NSYYLYFSSALLGFGAA 117 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc-----------------chHHHHHHHHHhhhhHH
Confidence 555567788889999999999 899999999988888765554444 56688899999999999
Q ss_pred ccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHH
Q 011716 109 GVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMV 153 (479)
Q Consensus 109 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~ 153 (479)
..+...-.++++...++. +++..++.+...+.+.++|..+..
T Consensus 118 llw~GqG~ylt~~st~~t---ie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 118 LLWTGQGGYLTSNSTRET---IERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred heecccceehhhcCChhh---HHHHHHHHHHHHHHHHHhhhHhhe
Confidence 999999999999888766 888888877777777777755443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.8e-06 Score=84.49 Aligned_cols=168 Identities=8% Similarity=-0.028 Sum_probs=116.3
Q ss_pred hHHHHHHhhhhcCCChh----hHHHHHHHHHHHHHHHhhhhH----hhhccccchhHH--HHHHHHHHHHHHHHHHHHhh
Q 011716 7 AINFVAYFLKSMHYPAA----ESAIMVNNFMGTSFLLTIFGG----FISDSFLTRFTT--FILFCTIELLGLILLTIQAQ 76 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~----~~g~i~~~~~~~~~~~~~~~G----~laDr~~Grk~~--~~~~~~~~~~~~~l~~~~~~ 76 (479)
.+.++.|.+++.+.+.. ..+++.+.-.+...+.+++.. ++.||..+.+.. +.+|.++.+++....++...
T Consensus 292 ~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~ 371 (475)
T TIGR00924 292 PTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIW 371 (475)
T ss_pred hhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666655444321 256677766666666666644 555542223333 36788888888777665421
Q ss_pred hcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh
Q 011716 77 YSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE 156 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~ 156 (479)
.. +++...+.+++.+..++.++|+....|..++++.+..|++. |+++++.+.....+|..+++.+.....
T Consensus 372 ~~-------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~---~g~~~g~~~l~~~~g~~l~~~~~~~~~ 441 (475)
T TIGR00924 372 FA-------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL---MGQMLGMWFLAQAMGSLLGGYLATFGA 441 (475)
T ss_pred hc-------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 01123378889999999999999999999999999999888 999999999999999999998888776
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHhhcc
Q 011716 157 ENRGWNCSFKISAVALGLALCIFTIGFP 184 (479)
Q Consensus 157 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 184 (479)
...+|...|...++..++..++.+...|
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 442 VPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6667887777666555555554444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.5e-06 Score=78.79 Aligned_cols=126 Identities=15% Similarity=0.026 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHhccc
Q 011716 30 NNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGG 109 (479)
Q Consensus 30 ~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~ 109 (479)
-...+....+.++.+++.|| +||||.+..+++++++.++++..+.+ ...-..+++.+|+... +
T Consensus 388 litslaefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~~------------rn~~tvllf~arafis----g 450 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCKT------------RNAYTVLLFTARAFIS----G 450 (528)
T ss_pred HHHHHhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhcC------------cchhHHHHHHHHHHHh----c
Confidence 34456778889999999999 89999999999999999988877741 1112335666777765 4
Q ss_pred cccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 011716 110 VKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALC 177 (479)
Q Consensus 110 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~~~~ 177 (479)
.+.+.+.|--|.+|..- |+...|......-+|+++.|.++ ...+. +=..+..+.+.+.+++.+
T Consensus 451 ~fqvaYvYtPEVyPTav---RatgvGtcSsmaRIggI~~p~iA-~~~e~-s~sl~i~vy~~~~ilagI 513 (528)
T KOG0253|consen 451 AFQVAYVYTPEVYPTAV---RATGVGTCSSMARIGGIFSPVIA-MRAEL-STSLPIFVYGALFILAGI 513 (528)
T ss_pred hheEEEEecCcccchhh---hhcchhhhhhHHhhhhhhhhHHH-HHhcc-ceeehHHHHHHHHHHHHH
Confidence 45567788899999877 99999999999999999999998 33332 222333444444444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=81.58 Aligned_cols=133 Identities=10% Similarity=0.003 Sum_probs=99.2
Q ss_pred cccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHH
Q 011716 300 SLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQ 379 (479)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
+...+..+...+..++.+.+.||++||.. +..+.++..++.+..... .+.+.++..
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-----------l~~~~~~~~~~~~~~~~a-------------~~~~~l~~~ 110 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSDRIGRRPV-----------LITGALIFTLACAATLFT-------------TSMTQFLIA 110 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHcCchHH-----------HHHHHHHHHHHHHHHHHc-------------CCHHHHHHH
Confidence 33344455666778889999999988854 677777777766666542 256667777
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHH
Q 011716 380 YLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYA 459 (479)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~ 459 (479)
.++.|++++...+.......+..|+++|+++++..+....+|..+++.+.+.+.. ..++++.|+
T Consensus 111 r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~----------------~~gw~~~f~ 174 (413)
T PRK15403 111 RFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH----------------FVHWKVLFA 174 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hcCHHHHHH
Confidence 8889999887777777888899999999999999999999999999988876541 234567788
Q ss_pred HHHHHHHHHHHHH
Q 011716 460 LLCILNFINFLNY 472 (479)
Q Consensus 460 ~~~~~~l~~~~~~ 472 (479)
+.+++.++..+..
T Consensus 175 ~~~~~~~i~~~~~ 187 (413)
T PRK15403 175 IIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHH
Confidence 8777766665443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.8e-06 Score=86.25 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=96.1
Q ss_pred ccccceeehhhhccchhhhh-hHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHH
Q 011716 303 VFPLTIMLASIPLYERSVHI-FERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYL 381 (479)
Q Consensus 303 ~~~~~~~~~~~~l~~~l~~~-~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
........+..++.+++.|| ++||+. +..|.++..++.+..+... .....+....+
T Consensus 57 ~~~~~~~~~~~~~~G~laDr~~G~r~~-----------~~~g~~~~~~g~~~~~~~~------------~~~~ll~~~~~ 113 (489)
T PRK10207 57 GAFAALVYGLISIGGYVGDHLLGTKRT-----------IVLGAIVLAIGYFMTGMSL------------LKPDLIFIALG 113 (489)
T ss_pred HHHHHHHHHHHhhHHHhhhhccchHHH-----------HHHHHHHHHHHHHHHHHhc------------cchhHHHHHHH
Confidence 33344555666788999998 888865 8888888888887777532 11223445678
Q ss_pred HHHHHHHHhhhhhhhhhcccCCcc--hHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHH
Q 011716 382 LLGVSDMLTLGGMLEFFYSEAPHS--MRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYA 459 (479)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~ 459 (479)
+.++|.++..|....++.+++|++ +|+.+.+.++...++|..+++.+.|.+.+ ..++++.|+
T Consensus 114 l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~----------------~~gw~~~F~ 177 (489)
T PRK10207 114 TIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD----------------KFGYSVTYN 177 (489)
T ss_pred HHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH----------------hhChHHHHH
Confidence 889999999999999999999987 45788999999999999999999988752 123566777
Q ss_pred HHHHHHHHHHHHHh
Q 011716 460 LLCILNFINFLNYI 473 (479)
Q Consensus 460 ~~~~~~l~~~~~~~ 473 (479)
+.++..+++++.+.
T Consensus 178 i~~i~~~~~~~~~~ 191 (489)
T PRK10207 178 LCGAGLIIALLVYF 191 (489)
T ss_pred HHHHHHHHHHHHHH
Confidence 75554444444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-05 Score=80.52 Aligned_cols=125 Identities=10% Similarity=0.090 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHH
Q 011716 22 AAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLY 101 (479)
Q Consensus 22 ~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (479)
+...+.+...+.++..++.+++++++|| +|+|+++..+..+..+...+..+.+ ..+...+++..+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 326 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVP--------------MQASITMFVFIF 326 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc--------------hhHHHHHHHHHH
Confidence 3445667778888889999999999999 8999987765554444333332221 002223344445
Q ss_pred HHHHhccccccchhhhhcccCCCcc--hhhh--hhhhhHHHHHHhhhHHHHHHHHHHHhhccch
Q 011716 102 AMATGVGGVKAALPAHGADQLDHSN--RRLI--SAFFNWFFFSLCAGGLVAATVMVWIEENRGW 161 (479)
Q Consensus 102 l~g~g~g~~~~~~~~~i~~~~~~~~--~~~~--~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw 161 (479)
+.|++.+...+...++++|..+.+| .++| +..++...+...+|..+|+.++|++....||
T Consensus 327 l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 327 VIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6677777777878889999887554 2223 3335666788999999999999988765555
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-06 Score=82.47 Aligned_cols=150 Identities=13% Similarity=0.059 Sum_probs=118.1
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccc--hhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLT--RFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~G--rk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
+.++++..+++..+.-+.|+..--..+.+.++..+.|.++|| ++ |-..-..++++.++.+....+++
T Consensus 291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~~~gl~~~G~~~~~iP~~~---------- 359 (464)
T KOG3764|consen 291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLSLGGLATVGVSSGPIPFAT---------- 359 (464)
T ss_pred cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHHHHHHHHHHHHhchhHhhh----------
Confidence 456777888888555589988888889999999999999999 79 54444455555554555555554
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchh---hhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchh
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRR---LISAFFNWFFFSLCAGGLVAATVMVWIEENRGWN 162 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~ 162 (479)
++..+++-++..+++.+....+..+......+.++.. ..+...++...+..+|..+||.++|.+.+..|++
T Consensus 360 ------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~ 433 (464)
T KOG3764|consen 360 ------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE 433 (464)
T ss_pred ------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH
Confidence 6777888888888888888888888888888776633 5778888888999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 011716 163 CSFKISAVALGL 174 (479)
Q Consensus 163 ~~f~i~~~~~~~ 174 (479)
|.-.+.+..-++
T Consensus 434 wl~~iig~~n~i 445 (464)
T KOG3764|consen 434 WLMTIIGILNLI 445 (464)
T ss_pred HHHHHHHHHHHH
Confidence 877766655443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=82.42 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=106.6
Q ss_pred ceeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccch--------hHHH-HHHHHHHHHHHHHHH
Q 011716 2 VFLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTR--------FTTF-ILFCTIELLGLILLT 72 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Gr--------k~~~-~~~~~~~~~~~~l~~ 72 (479)
+++.+....|.|+.+.+|++-.+.|+..+.-.+.+.+..+++|.++|| .-+ ||++ .++...-++..+.++
T Consensus 273 ~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~ 351 (466)
T KOG2532|consen 273 GFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVRKIFNTIAFGGPAVFLLVLA 351 (466)
T ss_pred HHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHHHHHHhHHHHHHHHHHHeee
Confidence 467788999999999999999999999999999999999999999999 443 1222 222333333333333
Q ss_pred HHhhhcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q 011716 73 IQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVM 152 (479)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~ 152 (479)
+... .+.......+.+...+.| ...+....-..|..| +. -+..+++.....++.++++|.+.
T Consensus 352 ~~~~----------~~~~~a~~~l~~~~~~~g----~~~~Gf~~~~~~~ap-q~---a~~l~g~~~~~~~~~~~~~P~~v 413 (466)
T KOG2532|consen 352 FTSD----------EHRLLAVILLTIAIGLSG----FNISGFYKNHQDIAP-QH---AGFVMGIINFVGALAGFIAPLLV 413 (466)
T ss_pred ecCC----------CcchHHHHHHHHHHHHcc----cchhhhHhhhhhccc-hH---HHHHHHHHHHHHHHHHHHHHHhe
Confidence 3320 000011222222222222 232333333333333 33 57788888889999999999999
Q ss_pred HHHhhc---cchhhHHHHHHHHHHHHHHHHHhh
Q 011716 153 VWIEEN---RGWNCSFKISAVALGLALCIFTIG 182 (479)
Q Consensus 153 ~~l~~~---~gw~~~f~i~~~~~~~~~~~~~~~ 182 (479)
+.+.++ ..|+.+|.+.++..+++.+.+.++
T Consensus 414 g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 414 GIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 999843 379999999998888776655554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.2e-06 Score=84.69 Aligned_cols=134 Identities=9% Similarity=0.045 Sum_probs=92.5
Q ss_pred cccccceeehhhhccchhhhhh-HhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHH
Q 011716 302 TVFPLTIMLASIPLYERSVHIF-ERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQY 380 (479)
Q Consensus 302 ~~~~~~~~~~~~~l~~~l~~~~-~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (479)
.........+..++.+++.||+ +||+. +..|.++..++...+...+ .+...+....
T Consensus 51 ~~~~~~~~~l~~ligG~LaDRilGrrr~-----------iliG~il~~lg~lll~~~~------------~~~~~~~l~l 107 (493)
T PRK15462 51 FSAYCSLVYVTPILGGFLADKVLGNRMA-----------VMLGALLMAIGHVVLGASE------------IHPSFLYLSL 107 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHH-----------HHHHHHHHHHHHHHHHHhh------------cchhHHHHHH
Confidence 3333445566777889999998 77754 6788888877766554321 1112233344
Q ss_pred HHHHHHHHHhhhhhhhhhcccCCcc--hHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHH
Q 011716 381 LLLGVSDMLTLGGMLEFFYSEAPHS--MRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFY 458 (479)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f 458 (479)
.+..+|.+...+...+++.|.+|++ +|+++.++.+...++|+.++|.+.+.+.. ..+++..|
T Consensus 108 ~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~----------------~~Gw~~~F 171 (493)
T PRK15462 108 AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE----------------EYSWAMGF 171 (493)
T ss_pred HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh----------------hhChHHHH
Confidence 4555666777787788999999976 79999999999899999999999987641 23456678
Q ss_pred HHHHHHHHHHHHHHhh
Q 011716 459 ALLCILNFINFLNYIY 474 (479)
Q Consensus 459 ~~~~~~~l~~~~~~~~ 474 (479)
.++++..+++++.+..
T Consensus 172 ~iaaigm~l~li~~~~ 187 (493)
T PRK15462 172 GLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666666665544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=82.51 Aligned_cols=135 Identities=11% Similarity=-0.117 Sum_probs=108.3
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHH
Q 011716 16 KSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAI 95 (479)
Q Consensus 16 ~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (479)
+.+|+++.+.|.+.....++..++....+++.+| ++.|+++.++.++.+++........+.+++. ....+...
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~------~gi~~~~~ 353 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLA------FGISDEVF 353 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccc------cCCCCeee
Confidence 5789999999999999999999999999999999 7999999999999988876543221111100 00002223
Q ss_pred HHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 96 LYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 96 l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
....-++.+++.+........++.+..|++. .+..++.+....|+|..+++.+++++.++.|
T Consensus 354 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~---egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 354 VLGDSIIAEVLAQLKFMPFLVLLARLCPSGC---ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred eeehhHHHHHHHHHHHccHHHHHHHhCCCCc---eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455677888888888889999999999888 8999999999999999999999999998777
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.2e-05 Score=79.61 Aligned_cols=138 Identities=11% Similarity=0.020 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHhhhh----HhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHH
Q 011716 25 SAIMVNNFMGTSFLLTIFG----GFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGL 100 (479)
Q Consensus 25 ~g~i~~~~~~~~~~~~~~~----G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (479)
.++..+.-.+...+..++. +++.|| ++.++.+.+++.+.+++....+...... .++...+.+++.+..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~~-------~~~~~vs~~~~~~~~ 389 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKFA-------NDAGIVSVNWLIASY 389 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCccCHHHHHHHH
Confidence 4445555554455555554 778888 6888899999999999998877765221 011222456788899
Q ss_pred HHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh----------ccchhhHHHHHHH
Q 011716 101 YAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE----------NRGWNCSFKISAV 170 (479)
Q Consensus 101 ~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~----------~~gw~~~f~i~~~ 170 (479)
+++++|++...|...+++.+..|++. |++.++.+.....+|..++..+.+.... ..+++..|...++
T Consensus 390 ~l~~~ge~~~~p~g~s~~~~~aP~~~---rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 466 (500)
T PRK09584 390 GLQSIGELMISGLGLAMVAQLVPQRL---MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGI 466 (500)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHH
Confidence 99999999999999999999999888 9999998887777777777666653321 1235667765554
Q ss_pred HHH
Q 011716 171 ALG 173 (479)
Q Consensus 171 ~~~ 173 (479)
..+
T Consensus 467 ~~~ 469 (500)
T PRK09584 467 ATA 469 (500)
T ss_pred HHH
Confidence 443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.9e-05 Score=72.62 Aligned_cols=144 Identities=10% Similarity=0.122 Sum_probs=110.9
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
..+.++.|+.+..|.+..++...++.+..+.+++++++-++-.| +...|.+.....+..+-.+..++.+
T Consensus 255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~---------- 323 (422)
T COG0738 255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG---------- 323 (422)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 34678899988899999999999999999999999999999889 7988888776666555555555553
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
+. ..+...++.|+..++++|+..+...+..|++. +.++..-. ..-+|+++-|.+.|++.+..|-...+
T Consensus 324 ------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t--s~~s~~l~---maivGGAiiP~l~G~i~d~~g~~~~~ 391 (422)
T COG0738 324 ------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT--SVGSGLLV---MAIVGGAIIPPLQGVIADMFGIQLTF 391 (422)
T ss_pred ------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--cccceeee---eheecchHHHHHHHHHHHhhhhHHHH
Confidence 32 34455678899999999999999999999332 13332222 45589999999999999999887766
Q ss_pred H-HHHHHH
Q 011716 166 K-ISAVAL 172 (479)
Q Consensus 166 ~-i~~~~~ 172 (479)
. ++..+.
T Consensus 392 ~~~pllc~ 399 (422)
T COG0738 392 LIVPLLCY 399 (422)
T ss_pred HHHHHHHH
Confidence 6 444443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.99 E-value=2e-05 Score=84.24 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=112.7
Q ss_pred CcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHH--HHhhh---------
Q 011716 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVEST--RRAAA--------- 365 (479)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~--~~~~~--------- 365 (479)
..+++...+.+...+..++.+++.||..||+. +.+|.++++++.++++..+-. ++...
T Consensus 69 ~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-----------i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~ 137 (633)
T TIGR00805 69 SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-----------IGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL 137 (633)
T ss_pred cceeeeehhhHHHHHHHHHHHHhhcccCcceE-----------EEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence 44566666677777778888888877766644 888999999999888776410 00000
Q ss_pred ----------c--C-------------Cc--cchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHH
Q 011716 366 ----------E--N-------------HV--TLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCST 418 (479)
Q Consensus 366 ----------~--~-------------~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~ 418 (479)
+ | .. ...+..+++.-++.|+|.+...+....++.|.+|++.|+.+.|+++...
T Consensus 138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~ 217 (633)
T TIGR00805 138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA 217 (633)
T ss_pred cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence 0 0 00 1124456678899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhccccCCCC------cccCCCCCc-hhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 419 SMGYFLSSALVSITNLVSGKFGG------EWLGGNDLN-HARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 419 ~lg~~~~~~l~~~i~~~~~~~~~------~~~~~~~~~-~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
.+|..+|+.+.+.+.....+... +..++ +.. .+.++..|++.+++.++..+.++.+
T Consensus 218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~-dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPT-DPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887644321100 00111 001 1224556777777776655544433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=74.30 Aligned_cols=108 Identities=17% Similarity=0.088 Sum_probs=90.1
Q ss_pred cccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHH
Q 011716 300 SLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQ 379 (479)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
.+.......-.+...+.+.+.||++.|.. +..+.+...+..++.++.+ +...+.+.
T Consensus 66 ~I~s~F~ysYal~qIp~GlLaDrlG~K~v-----------L~l~~l~Wsl~t~L~~fa~-------------Sl~~L~i~ 121 (511)
T TIGR00806 66 EIIPVLPYSHLAVLVPVFLLTDYLRYKPV-----------LVLQALSFVCVWLLLLLGT-------------SVWHMQLM 121 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCchHH-----------HHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Confidence 33333445566777888899999888765 7778888777777777642 56778888
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011716 380 YLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSIT 432 (479)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i 432 (479)
-+++|++|+... ....++.+-+|+++|++++|..+....+|..+++.+.+.+
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999 9999999999999999999999999999999999999884
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00023 Score=69.98 Aligned_cols=153 Identities=15% Similarity=0.182 Sum_probs=126.4
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCch
Q 011716 12 AYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHT 91 (479)
Q Consensus 12 ~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (479)
+|=.+.||++..|...+......+..++....|++..|..++|+.-..++.+..++..+..++....
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~------------- 299 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG------------- 299 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 3445679999999999999999999999999999988658999998899988888887777765222
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc----------cch
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN----------RGW 161 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~----------~gw 161 (479)
+.+.+..+.++.|+|.|.......+..-|..++++ .+.+++.+...+.+...+|..++|.+.+. .+|
T Consensus 300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~---aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY 376 (403)
T PF03209_consen 300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR---AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAY 376 (403)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHH
Confidence 56688899999999999999999999999988877 78899999999999999998888887542 357
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 011716 162 NCSFKISAVALGLALCIFT 180 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~ 180 (479)
..+|.+-++.+++++.+..
T Consensus 377 ~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 377 GVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788887777776665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.8e-05 Score=59.35 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=50.2
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHH
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIE 64 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 64 (479)
.+.++++.|++ +.|+|+.|+|.+.++..+...+++++.|.++|| +||++.++....+.
T Consensus 18 ~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 18 CLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM 75 (77)
T ss_pred HHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence 35677888876 689999999999999999999999999999999 79888877765543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0067 Score=62.01 Aligned_cols=136 Identities=10% Similarity=0.036 Sum_probs=88.5
Q ss_pred hhhhcCC-----ChhhHHHHHHHHHHHHHHH-hhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHh--hhcccccc--
Q 011716 14 FLKSMHY-----PAAESAIMVNNFMGTSFLL-TIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQA--QYSRLQPA-- 83 (479)
Q Consensus 14 l~~~l~~-----~~~~~g~i~~~~~~~~~~~-~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~-- 83 (479)
+.+.+.. +.....++.....+.+.+. .++-+++++| ++|++++......+..-..+.++.- .-+..+++
T Consensus 29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~ 107 (472)
T TIGR00769 29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL 107 (472)
T ss_pred hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence 3455555 3356777777776666666 8889999999 8999999998888887777666651 11111211
Q ss_pred cC----CCCC----------chhHHHHHHHHHHHHHhcccccc-chhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHH
Q 011716 84 MN----RRPS----------HTQAAILYTGLYAMATGVGGVKA-ALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVA 148 (479)
Q Consensus 84 ~~----~~~~----------~~~~~~l~~~~~l~g~g~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig 148 (479)
++ ..+. ++....+++.- .+=...+.. .-.++..|.+..+| -.|.++..+.+.|+|.++|
T Consensus 108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~---elw~~~vvS~lFW~fandi~t~~q---akRfy~l~~~ganlg~i~s 181 (472)
T TIGR00769 108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMA---ELWGSVVLSLLFWGFANQITTIDE---AKRFYALFGLGANVALIFS 181 (472)
T ss_pred HHHHHhhcchhhHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHHH
Confidence 00 0000 11111222211 121223333 66788999999888 8899999999999999999
Q ss_pred HHHHHHHh
Q 011716 149 ATVMVWIE 156 (479)
Q Consensus 149 ~~~~~~l~ 156 (479)
+.+..++.
T Consensus 182 g~~~~~~~ 189 (472)
T TIGR00769 182 GRTIKYFS 189 (472)
T ss_pred HHHHHHHH
Confidence 99988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.003 Score=62.77 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHH
Q 011716 25 SAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMA 104 (479)
Q Consensus 25 ~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 104 (479)
.+.++-+-.+-..+.-+..-++-+| .--+.=+..+..+..+|.++.++++ +.+.-+++-.+.+
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~~----------------~v~~~l~Gv~las 123 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFSP----------------SVWVRLLGVVLAS 123 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeecc----------------chhHHHHHHHHHh
Confidence 3445555566677777778888888 6644445556667778888888775 5556667888888
Q ss_pred HhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc--hhhHHHHHHHHHHHHHHHHHhh
Q 011716 105 TGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG--WNCSFKISAVALGLALCIFTIG 182 (479)
Q Consensus 105 ~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g--w~~~f~i~~~~~~~~~~~~~~~ 182 (479)
++.|.......++.+ .+++. ..+.+..+...++++|+..-..+.. .| .|..+.+..++-++-.+.+++.
T Consensus 124 ~ssg~GE~tfL~lt~-~y~~~-------~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 124 LSSGLGEVTFLSLTH-FYGKS-------SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred hhhhhhHHHHHHHHH-hcCcc-------ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888777777644 44432 2445555677777777766555555 44 4666666554433333333333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00017 Score=75.58 Aligned_cols=128 Identities=15% Similarity=0.045 Sum_probs=90.4
Q ss_pred hhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhh
Q 011716 312 SIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTL 391 (479)
Q Consensus 312 ~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 391 (479)
..++.+++.||+++|.. +.++.++..++.++.+..... .-..+.+.+.+..++.|+|.+...
T Consensus 77 ~~lp~G~L~Dr~G~R~v-----------llig~ll~~iG~ll~ala~~~-------~i~~s~~~l~l~r~l~G~G~~~~~ 138 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPI-----------FVLSMTVFCLGTLLFALTFQE-------VIEGSVVRLSVYNGLMTLGCMLFD 138 (591)
T ss_pred HHHHHHHHHHHhCcHHH-----------HHHHHHHHHHHHHHHHHHhcc-------cccCcHHHHHHHHHHHHHHHHHHH
Confidence 44467889898888865 888999999988887764210 001256667777889999999888
Q ss_pred hhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011716 392 GGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLN 471 (479)
Q Consensus 392 ~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~ 471 (479)
+.....+.+.+| +.||++.|+......+|+.+.+.+...+. ..+++.+|++.+++.++..++
T Consensus 139 ~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-----------------~~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 139 LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF-----------------SDNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhHHHHHHHHHHHHHHHHHH
Confidence 888888888887 56999999999999999976444443321 112345667777776665555
Q ss_pred Hhhh
Q 011716 472 YIYW 475 (479)
Q Consensus 472 ~~~~ 475 (479)
...+
T Consensus 201 ~~~~ 204 (591)
T PTZ00207 201 AIVF 204 (591)
T ss_pred HHhh
Confidence 4443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.016 Score=58.64 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHH
Q 011716 371 LSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALV 429 (479)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~ 429 (479)
.+...++...++.=+|.-....+..-+++|..|+++||+..|+-+..+.+...+...+.
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888888889999999999999999999999998888887765554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.7e-05 Score=77.80 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=100.8
Q ss_pred CcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHH
Q 011716 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWL 376 (479)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (479)
...|+...+.+...+..|+.+++.|.++||.. +..+.++..++.+..+..+ +...+
T Consensus 79 ~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-----------~i~g~~l~vvG~Iv~atA~-------------~~~~~ 134 (599)
T PF06609_consen 79 NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-----------FIIGSLLGVVGSIVCATAQ-------------NMNTF 134 (599)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHhcchHH-----------HHHHHHHHHhHHHHhhcCC-------------cHHHH
Confidence 34466666777788888999999999999977 8889999999998888643 45567
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHH
Q 011716 377 VWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDL 456 (479)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
+...++.|+|.+..... ...+.|..|.+.|+.+.++.....-.....++.+...+. ...+++|
T Consensus 135 iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~----------------~~~~WRw 197 (599)
T PF06609_consen 135 IAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA----------------AHSGWRW 197 (599)
T ss_pred HHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc----------------cCCCcch
Confidence 88889999997777654 555889999999988877665544443334444443321 1345678
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 011716 457 FYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 457 ~f~~~~~~~l~~~~~~~~~~~ 477 (479)
.|++.++...++++...++++
T Consensus 198 ~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 788888877777666555544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00041 Score=71.06 Aligned_cols=171 Identities=15% Similarity=0.070 Sum_probs=102.4
Q ss_pred CcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCccch
Q 011716 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAA----ENHVTLS 372 (479)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~----~~~~~~~ 372 (479)
..+....+..+..++..|+.+++.||...|.. +++..+..+.....+++.++........... +++....
T Consensus 40 ~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~G------RRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 40 WASIIWLCGPLSGLLVQPLVGYLSDRCTSRFG------RRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred HHHHHHHHHHHHHHHHHhHeeehhcCCCCCCC------ChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 33455666678888999999999996433322 0111134456666666666654321100000 0001112
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchH--HHHHHHHHHHHhhhHHHHHHHHhhhh--ccccCCCCcccCC--
Q 011716 373 VFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMR--SISTALSWCSTSMGYFLSSALVSITN--LVSGKFGGEWLGG-- 446 (479)
Q Consensus 373 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~r--g~~~g~~~~~~~lg~~~~~~l~~~i~--~~~~~~~~~~~~~-- 446 (479)
.+..+..+.+..++.....++.-+++.|.+|+++| +.+.+..+....+|+.++..+.+... ... ++...
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~-----~~~~~~~ 188 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF-----PFTKTEA 188 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-----ccccccc
Confidence 23445555566677777778888999999998866 57889889999999999998887641 110 01100
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011716 447 NDLNHARLDLFYALLCILNFINFLNYIYWAKR 478 (479)
Q Consensus 447 ~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~~ 478 (479)
...-..++...|.+.+++.+++.++..+..||
T Consensus 189 ~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E 220 (477)
T TIGR01301 189 CGVSCANLKSCFLIDIILLAILTYIALSAVKE 220 (477)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence 00112356777888888777777776666665
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.3e-05 Score=73.68 Aligned_cols=112 Identities=14% Similarity=0.048 Sum_probs=92.5
Q ss_pred cccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHH
Q 011716 298 TQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLV 377 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (479)
.+.+.+...+.-.+.+|..|.+.|+++||-. +.+|.+..++++.+++.- .+...++
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv-----------ll~c~~~va~s~ll~~~S-------------~~F~afv 125 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPV-----------LLACLIGVALSYLLWALS-------------RNFAAFV 125 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHH-----------HHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 3455566667778899999999999999976 888888888888877763 2444566
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011716 378 WQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNL 434 (479)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~ 434 (479)
.+-++.|+..+...+ ..+++.|.+++++|+.+++...+..++|.++||.+++.+..
T Consensus 126 ~aR~l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 126 LARFLGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 667888888877766 45899999999999999999999999999999999998764
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=73.44 Aligned_cols=147 Identities=9% Similarity=-0.015 Sum_probs=117.6
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHH
Q 011716 16 KSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAI 95 (479)
Q Consensus 16 ~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (479)
|+.+-.+.--|.....-..+-.+.-++.+++-.| +|+-+++.+++...++=.+.....+ +.|.
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~----------------n~W~ 461 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQ----------------NPWM 461 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhc----------------Cchh
Confidence 5667666666644444456778888999999999 8999999999999998888877776 7778
Q ss_pred HHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhH-HHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 011716 96 LYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNW-FFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGL 174 (479)
Q Consensus 96 l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~ 174 (479)
....-+++|+-.+..+.+..+|+++..|++- +..+-++ ...--.+|-.+|.+++|.+.+.+|=|..|.+.++..++
T Consensus 462 vLPieilqgit~aliWaa~~sY~s~vaPp~l---~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 462 VLPIEILQGITHALIWAAIISYASHVAPPGL---RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc---hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence 8889999999999999999999999999887 5555555 33455678888899999999999988889888777665
Q ss_pred HHHHHHhh
Q 011716 175 ALCIFTIG 182 (479)
Q Consensus 175 ~~~~~~~~ 182 (479)
.++.+...
T Consensus 539 ~l~~~~~i 546 (618)
T KOG3762|consen 539 TLALFISI 546 (618)
T ss_pred HHHHHHHh
Confidence 55554443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00029 Score=72.40 Aligned_cols=147 Identities=14% Similarity=0.187 Sum_probs=91.3
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccc---cchhHHHHHHHHHHHH-HHHHHHHHhhhc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSF---LTRFTTFILFCTIELL-GLILLTIQAQYS 78 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~---~Grk~~~~~~~~~~~~-~~~l~~~~~~~~ 78 (479)
.|+....+|.|+++..|++..+++.+...+..+..++.++.|+++||. +.+|........++.+ |.+......
T Consensus 289 ~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~--- 365 (495)
T KOG2533|consen 289 NYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAA--- 365 (495)
T ss_pred cccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---
Confidence 477889999999986789999999999999999999999999999992 2566655555555554 323333322
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHH-HHHHHHHHhh
Q 011716 79 RLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLV-AATVMVWIEE 157 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~i-g~~~~~~l~~ 157 (479)
..............+.....++......+....+.+ +-...+.+..+.+.++++ +++.-+....
T Consensus 366 -------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k--~~~~~~~~i~~~~s~~~~~~~~~~~~~ap 430 (495)
T KOG2533|consen 366 -------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK--ALTTVSAIIDGTGSAGAISGQLFRSLDAP 430 (495)
T ss_pred -------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchHH--hHHHHhhhhcchhHHHHhhhhhcccccCc
Confidence 122222222333344555666677777777755442 333333333333443333 3333444444
Q ss_pred ccchhhHHHH
Q 011716 158 NRGWNCSFKI 167 (479)
Q Consensus 158 ~~gw~~~f~i 167 (479)
.++|...|..
T Consensus 431 ~y~~~~~f~~ 440 (495)
T KOG2533|consen 431 RYGWGAVFYM 440 (495)
T ss_pred chhhhhHHHH
Confidence 5688888843
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.44 E-value=1.4e-06 Score=89.50 Aligned_cols=164 Identities=14% Similarity=0.006 Sum_probs=98.1
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHH-HHhhhcccccccCCC
Q 011716 9 NFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLT-IQAQYSRLQPAMNRR 87 (479)
Q Consensus 9 ~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 87 (479)
....++.+..+.++. -.......+...++.+++.++.|| +|||++++.+..+.++....++ .....+. .
T Consensus 274 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~-------~ 343 (451)
T PF00083_consen 274 YYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIFFLGVS-------S 343 (451)
T ss_pred ccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-------c
Confidence 334444556677666 122223345566677788899999 8999999999888888776664 1110000 0
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHH
Q 011716 88 PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKI 167 (479)
Q Consensus 88 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i 167 (479)
+...+................+..+....+.+|.+|.+. |.++.++.+....++.++++.+...+.+..+-...|.+
T Consensus 344 ~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~---R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i 420 (451)
T PF00083_consen 344 SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV---RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLI 420 (451)
T ss_pred ccccccccceeeeeccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccchh
Confidence 000011111111111112222445677788899999998 99999998888888998888888777776652344555
Q ss_pred HHHHHHHHHHHHHhhccc
Q 011716 168 SAVALGLALCIFTIGFPI 185 (479)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~ 185 (479)
.+...++..+..+...|+
T Consensus 421 ~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 421 FAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred hHHHHHHHHhheeEEEee
Confidence 454444444444444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=55.21 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHh
Q 011716 27 IMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATG 106 (479)
Q Consensus 27 ~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g 106 (479)
.-.++......+.+++.+.+.++ +|.|+.++++.+.+.+-....... +.+.++++-.+.|+|
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~~-----------------~~~~l~~~s~l~G~~ 102 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFYP-----------------NSYTLYPASALLGFG 102 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHhhh
Confidence 34444556677778888889999 899999999988887544333222 566888899999999
Q ss_pred ccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHH
Q 011716 107 VGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWI 155 (479)
Q Consensus 107 ~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l 155 (479)
.+..+++...++.+..++++ +++-.++.....+.+.++|.++.-.+
T Consensus 103 ~a~lW~aqg~ylt~~s~~~~---~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 103 AALLWTAQGTYLTSYSTEET---IGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHhhHhhhHHHHHcCCHHH---HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877666 77778887777777777776665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00086 Score=70.13 Aligned_cols=103 Identities=19% Similarity=0.078 Sum_probs=91.2
Q ss_pred ccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHH
Q 011716 299 QSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVW 378 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (479)
+++.....+...+..++.+++.|+++||.. +..+.++..++.+..+..+ +...++.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~-----------l~~~~~~~~iG~ii~~~a~-------------~~~~l~~ 147 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKT-----------LLLAVVLFLIGAIIIALAP-------------SWYQLIV 147 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHHHHHHHHHhh-------------hHHHHHH
Confidence 577777788888999999999999999966 7888888888888887743 6788999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHH
Q 011716 379 QYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLS 425 (479)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~ 425 (479)
.-++.|+|.+........+..|.+|++.||...+..+....+|..++
T Consensus 148 GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~ 194 (513)
T KOG0254|consen 148 GRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG 194 (513)
T ss_pred HHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888887
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0022 Score=48.58 Aligned_cols=67 Identities=1% Similarity=-0.042 Sum_probs=60.6
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHh
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQA 75 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~ 75 (479)
+++.+.+.++.++|.++.|++.++..+++.++.+...++.++ ..+++.+..+++...+.+..+++.+
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667788999999999999999999999999999999999 6889999999999999999988875
|
Note that many members are hypothetical proteins. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00036 Score=69.09 Aligned_cols=130 Identities=15% Similarity=0.024 Sum_probs=95.0
Q ss_pred HHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhh-hcccccccCCCCCchhHHHHHHHHHHHHHhccccccchh
Q 011716 37 FLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQ-YSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALP 115 (479)
Q Consensus 37 ~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~ 115 (479)
..+.++..++.|+ .|||+.-+.++.++++..+.++...+ .+ ..........+..++..+|=+ .+..
T Consensus 362 vPGyw~tv~~id~-iGRk~iq~~GF~~~~i~~~~~~~~y~~~~---------~~~Gf~v~y~l~~ff~NFGPn---~ttf 428 (538)
T KOG0252|consen 362 VPGYWFTVYFIDI-IGRKYIQLMGFFIMTIFFFVIAGPYNQLE---------NTIGFVVLYSLTFFFGNFGPN---ATTF 428 (538)
T ss_pred CCceeEEEEEeeh-hhhHHHHHhhHHHHHHHHHHHcCCccccc---------ccCceeehHHHHHHHHhcCCC---ceeE
Confidence 3466778889999 89999999999999988877766532 11 111122222233444444433 3444
Q ss_pred hhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh-----ccchhhHHHHHHHHHHHHHHHHHhh
Q 011716 116 AHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE-----NRGWNCSFKISAVALGLALCIFTIG 182 (479)
Q Consensus 116 ~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~-----~~gw~~~f~i~~~~~~~~~~~~~~~ 182 (479)
.+-+|.+|.+- |+.+.++.....-+|+++|.....++.+ ..|.+.+|++.+.+..+..+..++.
T Consensus 429 ivpaE~FParv---R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 429 IVPAEIFPARV---RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred EeehhhchHHH---hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 55569999887 9999999999999999999999999988 6788999999888887777665443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0014 Score=64.98 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=103.1
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcc---ccchhHHHHHHHH-HHHHHHHHHHHHhhhcccccc
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDS---FLTRFTTFILFCT-IELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr---~~Grk~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 83 (479)
+++++|++ ++|.+..-.+.+-...-+...+.+|+.|..+|| .+||||-++.... ..+++.++...+..+...+.+
T Consensus 53 sy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 53 SYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred ccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 45677775 789988888888888888899999999999996 2587776666544 445677777777544433322
Q ss_pred cCCC-CCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHH
Q 011716 84 MNRR-PSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVW 154 (479)
Q Consensus 84 ~~~~-~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~ 154 (479)
-++. .....+..++++.-+.-+..-..+...-++++|...++++++| +.+++.....+|..+|...+++
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~--Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR--ANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc--cchhHHHHHHhcceeeeecccc
Confidence 1111 1223555666666677777778888889999999987775444 7788888899999998888774
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0038 Score=65.44 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=99.6
Q ss_pred ccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHH
Q 011716 301 LTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQY 380 (479)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (479)
.+.+..++.+++..+.+.+.|+++||.. +..++++..+.-+..++. .+.+.+++.-
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~-----------~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~R 178 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKPV-----------LLVSLLLFIIFGILTAFA-------------PNYWMFLIFR 178 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHHH-----------HHHHHHHHHHHHHHHHHh-------------CcHHHHHHHH
Confidence 3444456677778888999999888865 677777777666555553 3677888889
Q ss_pred HHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHH
Q 011716 381 LLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYAL 460 (479)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 460 (479)
++.|++........+.+..|..++++|+.+..+ ......++.+++...+.+. .++++.+++
T Consensus 179 fl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~------------------~~Wr~~~~~ 239 (521)
T KOG0255|consen 179 FLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT------------------RDWRWLFWI 239 (521)
T ss_pred HHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH------------------hhHHHHHHH
Confidence 999999999999999999999999999999999 7777777888777776654 146777778
Q ss_pred HHHHHHHHHHH
Q 011716 461 LCILNFINFLN 471 (479)
Q Consensus 461 ~~~~~l~~~~~ 471 (479)
.....++.++.
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.15 Score=49.77 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=80.1
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhc-----cccchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISD-----SFLTRFTTFILFCTIELLGLILLTIQAQYS 78 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laD-----r~~Grk~~~~~~~~~~~~~~~l~~~~~~~~ 78 (479)
+|+...+|..++ .-|.|-++.+..--+| .=.-.-+++..+.| | +||||.-++=+ -+.+|.++..++...+
T Consensus 47 ~GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~-~GrrksWvvp~-q~llG~~mllLs~~v~ 121 (510)
T KOG3574|consen 47 LGLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKR-FGRRKSWVVPC-QYLLGLFMLLLSYLVD 121 (510)
T ss_pred hhHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHh-hccccceeeeh-HHHHHHHHHHHhhCCC
Confidence 355565666665 3466655544322222 11122456677778 8 89999765433 3344444444443223
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHH
Q 011716 79 RLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATV 151 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~ 151 (479)
..+.+ +. ...+...+....++.-+..+..-.++....-.+..+++ .+.+...+..+.+.|.++|..+
T Consensus 122 ~~~g~--ng-~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~---lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 122 RGLGG--NG-GLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN---LGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred ccccc--CC-CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh---cCchhHHHHHHHhhhHHhhcce
Confidence 22221 11 11133344445567777777777788888888887777 8888888888888888887554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00071 Score=68.00 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=100.8
Q ss_pred cceeehhhhccchhhhhhH-hhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 011716 306 LTIMLASIPLYERSVHIFE-RKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLG 384 (479)
Q Consensus 306 ~~~~~~~~~l~~~l~~~~~-~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (479)
...+-....+.+++.||+. +|+. +..|.+++.++.+.++..+ ..+...+...+++++
T Consensus 71 ~slVY~t~i~GG~laDr~LG~~~t-----------I~lGail~~iGh~~L~~~~-----------~~~~~gl~i~L~~I~ 128 (498)
T COG3104 71 GSLVYLTPIIGGWLADRVLGTRRT-----------IVLGAILMAIGHLVLAISS-----------VSGPGGLYIGLALII 128 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHH-----------HHHHHHHHHHHHHHHhccc-----------cccccHHHHHHHHHH
Confidence 3444556667789988864 4433 8899999999999988732 024556778888888
Q ss_pred HHHHHhhhhhhhhhcccCCcc--hHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHH
Q 011716 385 VSDMLTLGGMLEFFYSEAPHS--MRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLC 462 (479)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 462 (479)
+|.++.=|+...++.+++|++ +|-.+.++++...++|+.++|.+.+.+. + ..+++..|.+.+
T Consensus 129 iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~------------~----~~g~~~gF~~aa 192 (498)
T COG3104 129 VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA------------I----NYGWHVGFGLAA 192 (498)
T ss_pred hccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH------------H----hhCHHHHHHHHH
Confidence 999999999999999999843 3666777778888899999999997754 1 334677788888
Q ss_pred HHHHHHHHHHhhhhc
Q 011716 463 ILNFINFLNYIYWAK 477 (479)
Q Consensus 463 ~~~l~~~~~~~~~~~ 477 (479)
+-+..+++.|.+.-|
T Consensus 193 vGm~~gl~~f~~~~r 207 (498)
T COG3104 193 VGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHHccc
Confidence 888888887776543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=58.41 Aligned_cols=169 Identities=14% Similarity=0.031 Sum_probs=95.6
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPA 83 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (479)
|++.+.+..-+ ..-|.+...+|.+...-..+..+++.++|.++||.-+-|+++++......++.......+
T Consensus 283 ~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-------- 353 (480)
T KOG2563|consen 283 NSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-------- 353 (480)
T ss_pred HHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 34444443333 245777789999999999999999999999999954456666665555555532222222
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc---
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG--- 160 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g--- 160 (479)
........++..-.+.|....+..|...-+..|..-+... +.-.|......++=+.+=..+-+...+..+
T Consensus 354 ----~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E---~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~ 426 (480)
T KOG2563|consen 354 ----LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE---GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPG 426 (480)
T ss_pred ----ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC---cccceeEEeehhHHHHHHHHHHHHHhhccCCCC
Confidence 1111333455556677888888889888888887644431 222333222222222223444555555555
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhccccee
Q 011716 161 -WNCSFKISAVALGLALCIFTIGFPIYRY 188 (479)
Q Consensus 161 -w~~~f~i~~~~~~~~~~~~~~~~~~~~~ 188 (479)
|...-+...+...+...+..+.++++++
T Consensus 427 ~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 427 NTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred CCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 3322333333344444555555555443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.11 Score=54.26 Aligned_cols=154 Identities=9% Similarity=-0.004 Sum_probs=88.4
Q ss_pred HhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHH-HHHHHHHHHH-HHHHHHhhhcccccccCCCCCc
Q 011716 13 YFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFI-LFCTIELLGL-ILLTIQAQYSRLQPAMNRRPSH 90 (479)
Q Consensus 13 yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~ 90 (479)
.+.-.+|-+..+.+.+++++.++..+++.++|+++++ .-|+-..+ ++..+.+..+ .+........ .
T Consensus 40 ~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~-----------~ 107 (521)
T PRK03612 40 LASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSALILYAAFAFQ-----------G 107 (521)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 3444678888899999999999999999999998855 23332211 1111222111 1111111000 0
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh-ccch-hhHHHHH
Q 011716 91 TQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE-NRGW-NCSFKIS 168 (479)
Q Consensus 91 ~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~-~~gw-~~~f~i~ 168 (479)
.....++...++.++-.|+..|....+..+... ++ .++..+..|....+|+++|.++.+++.- ..|- +..+.++
T Consensus 108 ~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~---~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a 183 (521)
T PRK03612 108 LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH---LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTG 183 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc---hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 011122333445667777777777766654322 11 3555677788888999999999888765 4664 4555555
Q ss_pred HHHHHHHHHHHHhh
Q 011716 169 AVALGLALCIFTIG 182 (479)
Q Consensus 169 ~~~~~~~~~~~~~~ 182 (479)
.+..+++++..+..
T Consensus 184 ~l~~~~a~~~~~~~ 197 (521)
T PRK03612 184 SLNLLAALVFLWLF 197 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445554444443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.053 Score=54.12 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcc---hHHHHHHHHH
Q 011716 339 RIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHS---MRSISTALSW 415 (479)
Q Consensus 339 ~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~---~rg~~~g~~~ 415 (479)
.+..|.++..+|.+++...... ...++..+...+...+.++++|.+..=|+...+..++++++ .|......+.
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~----~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY 78 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIP----PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFY 78 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTS----SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhc----chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHH
Confidence 3678888888888886654321 00011234567888899999999999999999999999976 4666677778
Q ss_pred HHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011716 416 CSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAKR 478 (479)
Q Consensus 416 ~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~~ 478 (479)
...++|..++..+.+.+.+ ..+++..|.+.++.++++++.+..-.++
T Consensus 79 ~~in~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~ 125 (372)
T PF00854_consen 79 WGINIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGRKR 125 (372)
T ss_dssp HHHHHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHhhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCCcC
Confidence 8888999998888866541 3446777889888888888777655444
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.69 Score=49.68 Aligned_cols=177 Identities=12% Similarity=-0.018 Sum_probs=113.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHH
Q 011716 19 HYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYT 98 (479)
Q Consensus 19 ~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (479)
+............+.....+..+.....+|-.-++-..+...+....+..+...+.. ++. .+.........+
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a-------~~~~~~~~~~~~ 87 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGA-------IPSSGHPLHDLL 87 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcc-------CcccccchHHHH
Confidence 333445566677788888888999999999865566666666666666666665553 110 011111223445
Q ss_pred HHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-hhh-------HHHHHHH
Q 011716 99 GLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-WNC-------SFKISAV 170 (479)
Q Consensus 99 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w~~-------~f~i~~~ 170 (479)
....+.++.++..+.-+.+.+++.+..+.+++.+..+++++..+.+.+ |.+++..+..... +.. -++..++
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~~~~~~aF~i 166 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQDCYPLAFGV 166 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence 667788999999999999999999887777777889999888877766 5677666655432 221 2335555
Q ss_pred HHHHHHHHHHhhcccceecCCCCCchhhHHHHHH
Q 011716 171 ALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIA 204 (479)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (479)
..++.++.+..+....+..++++.....+.++.+
T Consensus 167 ~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~ 200 (654)
T TIGR00926 167 PAILMILALIVFMAGSKMYKKKPPKGNIVSKVIK 200 (654)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCccHHHHHHH
Confidence 5666666666666655555555444333444433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.1 Score=46.23 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=72.7
Q ss_pred HHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHh--hhcccccc--cCC--CCCchhHHH---------HHHH
Q 011716 35 TSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQA--QYSRLQPA--MNR--RPSHTQAAI---------LYTG 99 (479)
Q Consensus 35 ~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~--~~~--~~~~~~~~~---------l~~~ 99 (479)
+..+...+-.+++|| ++|.+++.+....+.....+.++.- +-+.++++ .++ ...+.+... ..+.
T Consensus 71 ~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slf 149 (491)
T PF03219_consen 71 VAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLF 149 (491)
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence 344557778999999 8999999988888887766666541 11122332 110 000001111 0000
Q ss_pred HHHHHHhcccccc-chhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh
Q 011716 100 LYAMATGVGGVKA-ALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE 157 (479)
Q Consensus 100 ~~l~g~g~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~ 157 (479)
-...-+=...+.+ .-..+..|.+..+| -.+.++..+.+.|+|.++++.+..++.+
T Consensus 150 Yv~aElwgsvvlSlLFW~fAN~itt~~e---AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 150 YVMAELWGSVVLSLLFWGFANEITTVEE---AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111112222 35778888888888 8899999999999999999998888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.056 Score=55.30 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=105.5
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhH-hhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 011716 11 VAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGG-FISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPS 89 (479)
Q Consensus 11 ~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G-~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 89 (479)
..|+...+++++.+.+...+.......+.+.+.. .+.-. +|-|+++..|+....+...+.++++
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~-------------- 329 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT-------------- 329 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc--------------
Confidence 3566778999999999888888888888887777 77777 8999999999999999999999996
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh
Q 011716 90 HTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE 157 (479)
Q Consensus 90 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~ 157 (479)
+.+..+....+ ....+...|...++++.+.++++ +++.+++......+...++|.+-+.+..
T Consensus 330 --~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~e---~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 330 --ETWMMFAAGVV-VALAGIVFPAIRAFASILVSPEE---QGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred --cchhhhHHHHH-HHhhcchhHHHHhHHHhhccccc---ccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 44455555544 44567888999999999999888 9999999999999999999998887754
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.085 Score=49.23 Aligned_cols=102 Identities=15% Similarity=0.018 Sum_probs=70.0
Q ss_pred hhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhh
Q 011716 312 SIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTL 391 (479)
Q Consensus 312 ~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 391 (479)
.+.+.|.+.|+.+.+.. +.+|.+...+++......-..+ -...+.|.+.....+.+.+....+
T Consensus 52 ~G~~~G~l~d~~gp~~~-----------l~iG~~~~~~GY~~~~l~~~~~------i~~~~~~~~~~~~~l~~~s~~~~~ 114 (250)
T PF06813_consen 52 FGILAGLLYDRFGPWVV-----------LLIGAVLGFVGYGLLWLAVSGR------IPSLPVWLMCLFLFLGGNSSCWFN 114 (250)
T ss_pred ccHHHHHHHHhcchHHH-----------HHHHHHHHHHHHHHHHHHHhCc------cCccchHHHHHHHHHHcccHHHhh
Confidence 35666888887777755 7888888888887776553220 011345555555566666766666
Q ss_pred hhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011716 392 GGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSI 431 (479)
Q Consensus 392 ~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~ 431 (479)
........+..|+ .||++.|+.-....+++.+-+.+.-.
T Consensus 115 ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 115 TASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred hHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHH
Confidence 6666667789985 69999999988888888775554433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.13 Score=54.75 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=100.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH--H--Hhhh------cC-----------------------------CccchHHHH
Q 011716 336 PLKRIGLGLALASGSMAVAAVVEST--R--RAAA------EN-----------------------------HVTLSVFWL 376 (479)
Q Consensus 336 ~~~~i~~g~~l~~i~~~~~~~~~~~--~--~~~~------~~-----------------------------~~~~~~~~l 376 (479)
+.+.++.|.++++++.++.++.|-. . ++.. ++ .+...+..+
T Consensus 161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf 240 (735)
T KOG3626|consen 161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF 240 (735)
T ss_pred ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence 4555899999999999998887521 1 1110 00 011133456
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCC--C-cccCCCCCc-hh
Q 011716 377 VWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFG--G-EWLGGNDLN-HA 452 (479)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~--~-~~~~~~~~~-~~ 452 (479)
+.+.++.|+|.....+....|+.|-+.++.-+.+.|+.++...+|=++|..+++.......+.+ . +..+. +-. .+
T Consensus 241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~-DPrWIG 319 (735)
T KOG3626|consen 241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPT-DPRWIG 319 (735)
T ss_pred HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCC-Ccchhh
Confidence 6688999999999999999999999999999999999999999999999999998775554431 1 11111 111 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 453 RLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 453 ~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
.++..|++++.++++..+.++.+=|
T Consensus 320 AWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 320 AWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3556788899998888777776644
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.99 E-value=4.8 Score=41.02 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHH-HHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhc---ccccccC-------CCC--
Q 011716 22 AAESAIMVNNFMG-TSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYS---RLQPAMN-------RRP-- 88 (479)
Q Consensus 22 ~~~~g~i~~~~~~-~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~-------~~~-- 88 (479)
+.....+-....+ +..+..++-+++.++ +.|.+++-+.+..+....+|+++.- .| .+++++. +.+
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~~~~F~~fF~LFa~Vi-~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYIILGFFLGFFALFAFVI-YPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHH-hccccccCCCHHHHHHHHhhCCcc
Confidence 4445566666666 677888999999999 8999999999999998888888772 22 1222211 111
Q ss_pred --------CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh
Q 011716 89 --------SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE 157 (479)
Q Consensus 89 --------~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~ 157 (479)
++++...+++.-=+- |.=...-.-..+..|++..+| -.|.++..+...|++..++..+..++.+
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELW--gslV~S~lFw~faNeitt~~e---akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELW--GSLVLSLLFWQFANEITTIEE---AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112222222211111 000111133456667777766 8899999999999999999998888765
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.24 Score=50.61 Aligned_cols=153 Identities=12% Similarity=-0.007 Sum_probs=89.1
Q ss_pred cccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-hHHHHHHHH
Q 011716 302 TVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTL-SVFWLVWQY 380 (479)
Q Consensus 302 ~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 380 (479)
.....++.++..|..+.+..|-. +.++.+..+.+++.++-++....+.. +. ..++++.+.
T Consensus 77 iaa~slg~~i~~liF~~Ws~k~~----------~~k~Pli~s~ii~~~g~llY~~l~~~---------~~~~~y~mL~~R 137 (488)
T KOG2325|consen 77 IAASSLGHAIFSLIFGIWSNKTG----------SVKKPLIVSFLIAIIGNLLYLALAYV---------PNGVKYLMLVAR 137 (488)
T ss_pred HHHHHHHHHhcchhhcccccccC----------CcccCHHHHHHHHHHHHHHHHHHHhc---------ccchHHHHHHHH
Confidence 33345666677777766543222 22444888999999999888665532 22 456777888
Q ss_pred HHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHH
Q 011716 381 LLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYAL 460 (479)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 460 (479)
++.|+|.+.... .=.|+....-.+.|.++++.....+.+|.++||.+...+..... ++..|.+. .....+...=|+
T Consensus 138 ~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~-~G~~i~~~--~~~n~YTap~w~ 213 (488)
T KOG2325|consen 138 ILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE-KGFMILPG--LIFNMYTAPAWL 213 (488)
T ss_pred HHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC-CceEEcCc--ceEEecchHHHH
Confidence 999998665554 34666665555667777777777777777777777665532221 11133332 111122223355
Q ss_pred HHHHHHHHHHHHhhhhc
Q 011716 461 LCILNFINFLNYIYWAK 477 (479)
Q Consensus 461 ~~~~~l~~~~~~~~~~~ 477 (479)
.+.+.++.+++..++.|
T Consensus 214 m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 214 MAILWIIYIVIILFFFK 230 (488)
T ss_pred HHHHHHHHHHHHHhhee
Confidence 55666655555554444
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.0051 Score=64.33 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=2.9
Q ss_pred CcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHH--HHhh--hc------
Q 011716 297 PTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVEST--RRAA--AE------ 366 (479)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~--~~~~--~~------ 366 (479)
..+.+...+-+..++...+..+. +.|. ++.+.+..|.++++++.+++++.|-. .+.. .+
T Consensus 39 ~~G~i~s~~di~~~~~~~~vsy~----g~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~ 107 (539)
T PF03137_consen 39 QSGLISSSYDIGSLVVVLFVSYF----GGRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS 107 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhhc-------CCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence 44555555556666665555554 3332 34556899999999999998776511 1100 00
Q ss_pred --------------------------C-CccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHh
Q 011716 367 --------------------------N-HVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTS 419 (479)
Q Consensus 367 --------------------------~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 419 (479)
+ ........+++..++.|+|..-..+...+|+.|.++++.-+.+.|+.+....
T Consensus 108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~ 187 (539)
T PF03137_consen 108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI 187 (539)
T ss_dssp --------------------------------------------SSS---------------------------------
T ss_pred ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence 0 1112345677788999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhccccCCCC-------------cccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 420 MGYFLSSALVSITNLVSGKFGG-------------EWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 420 lg~~~~~~l~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
+|-.+|..+.+.....+.+... .|+++ ++..|++++.+.++..+.++.+=|
T Consensus 188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA-------WWLGfli~g~~~~l~aipl~~FPk 251 (539)
T PF03137_consen 188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA-------WWLGFLICGILLFLSAIPLFFFPK 251 (539)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH-------HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999998888876544332111 23332 444677777777766665555433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.28 Score=42.22 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011716 372 SVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSIT 432 (479)
Q Consensus 372 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i 432 (479)
+.+.+++.-++.|++.+..+...-.++.+..+++.|++-.++.+.....+..+|..+.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889999999999999999999999999999999999999988888887666443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.37 Score=48.30 Aligned_cols=157 Identities=14% Similarity=0.015 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHH
Q 011716 261 PIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRI 340 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i 340 (479)
.+.+..-+.|....++.+-+.++. ..+ ....+......++..++..|+.+...||...|+.| ++-.+
T Consensus 39 ~ia~Gvqf~wA~elsy~tPyl~~l-Gvp------hk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR------RRPfI 105 (498)
T KOG0637|consen 39 SIAAGVQFGWALELSYLTPYLQSL-GVP------HKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR------RRPFI 105 (498)
T ss_pred HHHHHHHHHHHHHhccccHHHHHc-CCC------cccccccccccccccceeccccccccccccccccc------ccchH
Confidence 333444455555555444443331 222 33456667777888899999999999998888762 22236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcc----chHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHH-HHHHHH
Q 011716 341 GLGLALASGSMAVAAVVESTRRAAAENHVT----LSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI-STALSW 415 (479)
Q Consensus 341 ~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~-~~g~~~ 415 (479)
..+..+..+++.++++.++---.-.||... ......++.+-+.=+..-......-++..+++-++.|-+ +.+.+.
T Consensus 106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~ 185 (498)
T KOG0637|consen 106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS 185 (498)
T ss_pred HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence 777777788888777765321111222222 344455555555556554555555577777776666666 999999
Q ss_pred HHHhhhHHHHHHHHh
Q 011716 416 CSTSMGYFLSSALVS 430 (479)
Q Consensus 416 ~~~~lg~~~~~~l~~ 430 (479)
+...+|+.+|-.+.+
T Consensus 186 ~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 186 FFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHhcceeeeeccc
Confidence 999999999876664
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.89 E-value=8.5 Score=39.29 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011716 372 SVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSI 431 (479)
Q Consensus 372 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~ 431 (479)
+.++.+..+++.|+..|......+.+..+..++++|..+..+..+...+|-.+|+.+.-.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556668899999999988888899999999999999999999998988888776543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.14 E-value=10 Score=37.90 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHH
Q 011716 372 SVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALV 429 (479)
Q Consensus 372 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~ 429 (479)
+.++.+....++|+..+=.....+.++-+..|++++..+..++.+....|-..|..+.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4466777778889988888888999999999999999998888887777777776555
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.91 Score=46.33 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccC---CcchHHHHHHHHHH
Q 011716 340 IGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEA---PHSMRSISTALSWC 416 (479)
Q Consensus 340 i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---P~~~rg~~~g~~~~ 416 (479)
+.++.++..++...++..... ..+.......+.+..+|..+......+...|.. |.+ ||..++..+.
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~---------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~ 131 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPAS---------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWG 131 (433)
T ss_pred HHHHHHHHHHHHHHHHhcccc---------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHH
Confidence 666766666555555554321 123344455566777788888777777777755 444 8888999999
Q ss_pred HHhhhHHHHHHHHhhhh
Q 011716 417 STSMGYFLSSALVSITN 433 (479)
Q Consensus 417 ~~~lg~~~~~~l~~~i~ 433 (479)
.+.+|+.++..+.|...
T Consensus 132 ~~~~G~lv~~~l~G~l~ 148 (433)
T PF03092_consen 132 VRSVGSLVGSLLSGPLL 148 (433)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 99999999999988754
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.69 E-value=10 Score=36.48 Aligned_cols=121 Identities=11% Similarity=0.091 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHH
Q 011716 26 AIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMAT 105 (479)
Q Consensus 26 g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 105 (479)
|.++-+=.+-..+.-+..-..-|| +---.-+.+...+.+.+..+.++++ +.++-..+-.+..+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~r-fpf~~Ri~~~v~~sa~s~~lVafs~----------------s~~~sL~GV~~aSi 127 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHR-FPFGFRIALVVLLSALSFFLVAFSN----------------SVPMSLLGVVFASI 127 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhh-cccchHHHHHHHHHhcceEEEEecc----------------chhHHHhhhhhhhh
Confidence 334443344444455555666777 4422223334556677777777776 56677777788888
Q ss_pred hccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh--ccchhhHHHHHHHH
Q 011716 106 GVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE--NRGWNCSFKISAVA 171 (479)
Q Consensus 106 g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~--~~gw~~~f~i~~~~ 171 (479)
+.|.-..+..++-+. +|... .+.+..+...++++|..--..+.+ +.+-+....+...+
T Consensus 128 ssGlGEiTFL~lss~-Y~~~~-------i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~l 187 (409)
T KOG3880|consen 128 SSGLGEITFLALSSR-YPSIV-------IAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFL 187 (409)
T ss_pred cCCcceeehhhhhcc-CCCce-------eccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHH
Confidence 888776666555443 33322 222233444445555444444544 23455555544433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.33 E-value=2.1 Score=43.70 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhhh----hHhh---hccccchhHHHHHHHHHHHHHHHHHHHHhhhcccc---cc--cCCCCCchhHHH
Q 011716 28 MVNNFMGTSFLLTIF----GGFI---SDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQ---PA--MNRRPSHTQAAI 95 (479)
Q Consensus 28 i~~~~~~~~~~~~~~----~G~l---aDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~--~~~~~~~~~~~~ 95 (479)
+.+.+.++..++..+ .+.+ .+| +||++++.++..+..++.++.-+.. |.-. ++ .+.. ...+...
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~~~t~~~~~~-~~~~~~~ 355 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPLRPTDSPPLL-FTPSYYL 355 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cccCCCCCCcccccc-cccchhH
Confidence 333444444444443 4444 577 7999999999999888887776653 3211 11 1111 1113445
Q ss_pred HHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHH
Q 011716 96 LYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMV 153 (479)
Q Consensus 96 l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~ 153 (479)
..+.-++.|++.+......+.++++.+ +++ |..++++......++..++.....
T Consensus 356 ~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~---~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 356 ALIIGFLLGFGDACFNTQRYVIIALLY-PDD---RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHh-cCc---hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 556667899999999999999999999 455 566777766666666665544433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=90.69 E-value=4.6 Score=41.01 Aligned_cols=134 Identities=13% Similarity=0.008 Sum_probs=96.2
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
-..+..|+..+ |+++...|..=+.-.+....+.+...++-+| +|.-|.=+.++........++..+-..+.
T Consensus 278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~------- 348 (432)
T PF06963_consen 278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPG------- 348 (432)
T ss_pred cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 35667788766 9999999999999999999999999999999 89998888888777766665554421110
Q ss_pred CC-CchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q 011716 87 RP-SHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVM 152 (479)
Q Consensus 87 ~~-~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~ 152 (479)
.+ ...+...++.+..+-=+|.=+.--+..-++.|..|+++ |+...+......++--.+....+
T Consensus 349 ~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~---Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 349 SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE---RGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH---hhHHHHHHHHHHHHHHHHHHHHH
Confidence 01 12234344444333334444556677788889999888 99999998888888777765554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.00 E-value=6.3 Score=38.62 Aligned_cols=91 Identities=16% Similarity=-0.010 Sum_probs=55.5
Q ss_pred cccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHH
Q 011716 300 SLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQ 379 (479)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
.+........++++++.+.+.||++||.. .....++..++.+ ... ..+...+++.
T Consensus 73 ~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~-----------cl~~cily~~scl----~k~----------~~~~~~L~~G 127 (354)
T PF05631_consen 73 ILFVAGFASSAIFGTFVGSLADRYGRKKA-----------CLLFCILYSLSCL----TKH----------SSNYPVLLLG 127 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHH-----------HHHHHHHHHHHHH----HHh----------ccccHHHHHH
Confidence 33444456678889999999999998853 3333333333332 221 2346677778
Q ss_pred HHHHHHHHHHhhhhhhh-----hhcccCCcchHHHHHHHHH
Q 011716 380 YLLLGVSDMLTLGGMLE-----FFYSEAPHSMRSISTALSW 415 (479)
Q Consensus 380 ~~~~~~~~~~~~~~~~~-----~~~~~~P~~~rg~~~g~~~ 415 (479)
-++.|++..+.+...-+ ...+..|++..+...+...
T Consensus 128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t 168 (354)
T PF05631_consen 128 RVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT 168 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 88888887777664433 2335667776666555443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=89.21 E-value=6.6 Score=36.67 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=36.4
Q ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHH---hh--ccchhhHHHHHHHHHHHHHHHHHhhccc
Q 011716 130 ISAFFNWFFFSLCAGGLVAATVMVWI---EE--NRGWNCSFKISAVALGLALCIFTIGFPI 185 (479)
Q Consensus 130 ~~~~~~~~~~~~~ig~~ig~~~~~~l---~~--~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 185 (479)
++....+..++.|+|+++.-..--.- .+ .-.|++++.+.+++..+-+++....-++
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~ 64 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN 64 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66666777788999999874332111 11 2359999998888776666665555444
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=88.55 E-value=32 Score=35.43 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011716 376 LVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNL 434 (479)
Q Consensus 376 l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~ 434 (479)
++...++..+.....+....++-.+.++|..=||+|.+.|+..++|+.--..++-.+.+
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 44567888888888899999999999999999999999999999998876666655443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.6 Score=42.37 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=78.8
Q ss_pred HHHHHhh-hhcCCChhhHH-HHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 9 NFVAYFL-KSMHYPAAESA-IMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 9 ~~~~yl~-~~l~~~~~~~g-~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
++.+|+. .+.+++..|.. -+.-+..-.+.+.-.+.=.+.|- .--|++++.-.+-......++-+..
T Consensus 26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~-lrYKPvivlq~ls~v~~w~~lv~g~----------- 93 (433)
T KOG3810|consen 26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDY-LRYKPVVVLQALSGVPVWIMLVFGP----------- 93 (433)
T ss_pred ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhh-hhcceeeeeeccchhHHHHHHHhcC-----------
Confidence 4555665 45567666643 22223344455555566678897 4445544443333333334444443
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc--cchhhH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN--RGWNCS 164 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~--~gw~~~ 164 (479)
+...+=+.-+.. |...++-.++-+.++.+-+++.+.+..+....+.-.|-..|...+..+... .++...
T Consensus 94 -----sV~~mQvlE~Fy----G~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~L 164 (433)
T KOG3810|consen 94 -----SVKAMQVLEFFY----GPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTL 164 (433)
T ss_pred -----Cchheeeehhhc----ChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhh
Confidence 222232223333 344444445555555444455589999998888888888887777666542 334333
Q ss_pred HHHHHHHHHHHHHH
Q 011716 165 FKISAVALGLALCI 178 (479)
Q Consensus 165 f~i~~~~~~~~~~~ 178 (479)
=.++.....++..+
T Consensus 165 N~ISL~~~~ia~~~ 178 (433)
T KOG3810|consen 165 NYISLAEVTIAVLL 178 (433)
T ss_pred chhhHHHHHHHHHH
Confidence 34555555555444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=86.14 E-value=5.9 Score=39.70 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE 156 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~ 156 (479)
+.+..++..+..|+-.|..+.+....+.|..|+++ |+-.++...++-.+|..++.+++-++.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~---REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED---REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66677778888999999999999999999888877 999999999999999999988876654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=85.61 E-value=22 Score=35.81 Aligned_cols=94 Identities=16% Similarity=0.050 Sum_probs=64.6
Q ss_pred ccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhh
Q 011716 315 LYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGM 394 (479)
Q Consensus 315 l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 394 (479)
....+.|.++.|.. +.++.+...+...++... .+..++-+.-++.|++... ....
T Consensus 60 ~vflltd~l~Ykpv-----------iil~~~~~i~t~~lll~~-------------~sv~~mq~~q~~yg~~~a~-evay 114 (412)
T PF01770_consen 60 PVFLLTDYLRYKPV-----------IILQALSYIITWLLLLFG-------------TSVLAMQLMQFFYGLATAA-EVAY 114 (412)
T ss_pred HHHHHHHHhhhhHH-----------HHHHHHHHHHHHHHHHHH-------------CcHHHHHHHHHHHHHHHHH-HHHH
Confidence 33445555555533 555555544445554443 2566666666777777654 5667
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 395 LEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 395 ~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
++|++...|+++--++++-.....-+|..++..++..+.
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999989998888888888888888888765
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.18 E-value=9.1 Score=36.00 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhccccchh--HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHH
Q 011716 25 SAIMVNNFMGTSFLLTIFGGFISDSFLTRF--TTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYA 102 (479)
Q Consensus 25 ~g~i~~~~~~~~~~~~~~~G~laDr~~Grk--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 102 (479)
-|.+.+.+++...+++-+..++..| -..| ..+.+.+.+......+-.+..+.. |+..+...-.++..+
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~-s~~~ve~ymqivf~vs~a~l~Lpilt~~vs---------P~kes~~~s~i~F~~ 353 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSR-SSPKVESYMQIVFLVSIAALLLPILTSSVS---------PSKESPSESLIGFCL 353 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhc-CCcccchHHHHHHHHHHHHHHHHHHHhccC---------CCcCCchHHHHHHHH
Confidence 4788999999988888888888776 2222 234444444444433333332111 233344445666777
Q ss_pred HHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 011716 103 MATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLA 175 (479)
Q Consensus 103 ~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~~ 175 (479)
.-...|..+|....+=++..|+++ |+..++++..-.|+=.-++-..--.=....+-|..|.+.......+
T Consensus 354 ~E~cvGlfwPSimkmRsqyIPEea---rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 354 FEACVGLFWPSIMKMRSQYIPEEA---RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred HHHHHhhcchHHHHHHHhhCCHHH---HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence 778889999999999999999988 9999998777665533322111000000124456777666554444
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=81.42 E-value=35 Score=35.21 Aligned_cols=44 Identities=9% Similarity=-0.110 Sum_probs=38.7
Q ss_pred hhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011716 390 TLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITN 433 (479)
Q Consensus 390 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~ 433 (479)
.+-..+.++.|....++..+..++.....++|..+++.+...+.
T Consensus 146 vS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 146 LSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477899999999999999999999999999999998887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=80.90 E-value=5.8 Score=36.87 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcccCCc-chHHHHHHHHHH-HHhhhHHHHHHHHhhhh
Q 011716 373 VFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPH-SMRSISTALSWC-STSMGYFLSSALVSITN 433 (479)
Q Consensus 373 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~-~~~lg~~~~~~l~~~i~ 433 (479)
.+.++......+++.+...+....+..+..|+ +.|+...+.... ...+|..+++.+.+.+.
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555668888888999999999999998 678888888877 57777788876665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 479 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 9e-13 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 4e-82
Identities = 95/504 (18%), Positives = 182/504 (36%), Gaps = 64/504 (12%)
Query: 9 NFVAYFLKSMHY------PAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCT 62
+ + ++ A + + ++F+ + + GG+I+D F ++ T +
Sbjct: 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL 93
Query: 63 IELLGLILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQL 122
I +G L I YTGL+ +A G GG+K + + DQ
Sbjct: 94 IYCVGHAFLAI---------------FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQF 138
Query: 123 DHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFTIG 182
D SN+ L F+ F+F++ G A+ M + +N G +F I V + +A F +G
Sbjct: 139 DQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198
Query: 183 FPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGAT---------RSNDMF 233
Y + P VI SA+ + + + +A G + +
Sbjct: 199 RKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIV 258
Query: 234 RVLDKALF-----------------DDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQL 276
L A+ + A V+ ++ L +L +FA Q
Sbjct: 259 AGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQK 318
Query: 277 QTFSVQQGIIMNRTINNFKIPTQSLTVF-PLTIMLASIPLYERSVHIFERKISAKYNIFR 335
+ + Q M + + PL +ML IP ++ ++ K
Sbjct: 319 ASTWILQANDM---VKPQWFEPAMMQALNPLLVML-LIPFNNFVLYPAIERMGVK---LT 371
Query: 336 PLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGML 395
L+++G G+A+ S V ++ + LS+FW + Y LL ++L L
Sbjct: 372 ALRKMGAGIAITGLSWIVVGTIQL----MMDGGSALSIFWQILPYALLTFGEVLVSATGL 427
Query: 396 EFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLD 455
EF YS+AP +M+ + S ++G + E + ++
Sbjct: 428 EFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQ 484
Query: 456 LFYALLCILNFINFLNYIYWAKRY 479
+F+ + + + +A+ Y
Sbjct: 485 MFF--FAGFAILAAIVFALYARSY 506
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 78/442 (17%), Positives = 156/442 (35%), Gaps = 64/442 (14%)
Query: 18 MHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQY 77
+H A +A ++ + +L GGF++D + + +LG I+L +
Sbjct: 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--- 105
Query: 78 SRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWF 137
A+ L+ + + G G +K + D +RR + F + F
Sbjct: 106 -------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGF-SIF 151
Query: 138 FFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALCIFTIGFPIYR---------- 187
F + G +A ++ +E G++ +F ++A+ + + L ++ G
Sbjct: 152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDP 211
Query: 188 -YKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKA-----LF 241
+ ++ +A I A M + N + V +
Sbjct: 212 LAPEEVKPLLVKVSLAVAGFI----AIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAW 267
Query: 242 DDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMN----RTINNFKIP 297
+ E + +P+F + ++ Q +++ +++ P
Sbjct: 268 MISSVKVTSTEHLRVVSYIPLFIAAVL-------FWAIEEQGSVVLATFAAERVDSSWFP 320
Query: 298 T---QSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVA 354
QSL PL IML + ++ K P K +GL A S +
Sbjct: 321 VSWFQSLN--PLFIMLYTPFF----AWLWTAW--KKNQPSSPTK-FAVGLMFAGLSFLLM 371
Query: 355 AVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALS 414
A+ A +S WLV + L+ + +ML L AP + S ++
Sbjct: 372 AIP----GALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW 427
Query: 415 WCSTSMGYFLSSALVSITNLVS 436
+ S+S+G L++ LV++ N S
Sbjct: 428 FLSSSVGSALNAQLVTLYNAKS 449
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 59/522 (11%), Positives = 136/522 (26%), Gaps = 164/522 (31%)
Query: 2 VFLSNAINFVAYFLKSMH---YPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFI 58
LS V F++ + Y S I S + ++ R
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMY-----IEQRDR----- 118
Query: 59 LFCTIELLGLILLTIQAQYSRLQPA-MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAH 117
L+ ++ ++ Y +L+ A + RP+ + + G G K +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK------NVLIDGVL-GSG--KTWVALD 169
Query: 118 GADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLALC 177
+ ++ F W+ N NC+ + + + L
Sbjct: 170 VC-----LSYKVQCKMDFKIF---------------WL--NLK-NCNSPETVLEMLQKLL 206
Query: 178 IFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRS-----N-- 230
+ I S + RI + ++E+ + S N
Sbjct: 207 -YQIDPNWTSRSDHSSNIKLRI-----------HSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 231 -----DMF----RVL----DKALFD--DTITAAQVEETKTFLGLLP-----IFASTIMMN 270
+ F ++L K + D T + + L P + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 271 CCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTI-MLAS-----IPLYERSVHI-- 322
+P + LT P + ++A + ++ H+
Sbjct: 315 P----------------------QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 323 --FERKISAKYNIFRP--LKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVW 378
I + N+ P +++ L++ S H+ + L+W
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSV---------FPPSA-------HIPTILLSLIW 396
Query: 379 QYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGK 438
++ ++ + + S + S + + + +
Sbjct: 397 FDVIKSDVMVVV-------------NKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENE 442
Query: 439 FGGEWLGGNDLNHARLDLFYALLCILNFINFL-----NYIYW 475
+ L H + Y + + + + Y Y
Sbjct: 443 Y--------AL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 50/283 (17%), Positives = 86/283 (30%), Gaps = 82/283 (28%)
Query: 231 DMFR-VLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQ------ 283
DM + +L K D I + G L +F L Q VQ+
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVS-----GTLRLFW-------TLLSKQEEMVQKFVEEVL 87
Query: 284 ----GIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKR 339
+M+ + P+ ++ LY +F AKYN+ R
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRD----RLY-NDNQVF-----AKYNVSRLQPY 137
Query: 340 IGLGLALAS----------GSMA-------VAAVVESTRRAAAENHVTLSVFWL-VWQY- 380
+ L AL G + V S + + + +FWL +
Sbjct: 138 LKLRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKV---QCKMDFKIFWLNLKNCN 193
Query: 381 ---LLLGVSDML-TLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVS 436
+L +ML L ++ ++ +I + + L S LV
Sbjct: 194 SPETVL---EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV- 249
Query: 437 GKFGGEWLGGNDLNHAR-LDLFYALLC-IL------NFINFLN 471
L ++ +A+ + F L C IL +FL+
Sbjct: 250 -------L--LNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLS 282
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 20/185 (10%)
Query: 10 FVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL--TRFTTFILFCTIELLG 67
Y + H+ +S+ + T+ G++SD R T + F T+ +
Sbjct: 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334
Query: 68 LILLTIQAQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNR 127
I+ + + T I + + + G + H +
Sbjct: 335 TIVYWMNPA-----------GNPTVDMIC---MIVIGFLIYGPVMLIGLHALELAPKKAA 380
Query: 128 RLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFK--ISAVALGLALCIFTIGFPI 185
+ F F G + A+ ++ + + GW+ F I L + L I +
Sbjct: 381 GTAAGFTG--LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 438
Query: 186 YRYKR 190
R+++
Sbjct: 439 RRHEQ 443
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.93 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.37 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.26 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.21 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.02 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.89 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.64 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.35 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=269.27 Aligned_cols=420 Identities=15% Similarity=0.227 Sum_probs=279.6
Q ss_pred ceeehhHHHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 011716 2 VFLSNAINFVAYFLKS-----MHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQ 76 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~-----l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~ 76 (479)
++|++.+.++.|++++ +|+++.+.+++.+.+.++..++++++|+++||++|||+++..+..+.+++.+++++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~- 106 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF- 106 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh-
Confidence 4678889999999988 9999999999999999999999999999999933999999999999999999988875
Q ss_pred hcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh
Q 011716 77 YSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE 156 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~ 156 (479)
+.+.+++.|+++|+|.+...|+..++++|++|+++++ |+.+++.++...++|..+||.+++++.
T Consensus 107 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 107 ---------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-RDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp ---------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc-ceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 5668889999999999999999999999999987643 677888889999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHhhcccceec---CCCCC-chhhHHHHHHH--------------HHhhccccccchh
Q 011716 157 ENRGWNCSFKISAVALGLALCIFTIGFPIYRYK---RPSGS-PITRIFKVIAS--------------AIRNRKASRSEMT 218 (479)
Q Consensus 157 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~ 218 (479)
++.|||+.|++.++..+++.+..+...++..++ ++++. +.++..+.... ....++.. .++.
T Consensus 171 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~ 249 (491)
T 4aps_A 171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS-LPAY 249 (491)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC-TTHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc-cccc
Confidence 999999999998777666655554443332111 11111 11111110000 00000000 0000
Q ss_pred hhccCCCCCCCCCcchhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhh-cccCCCCcccC
Q 011716 219 EQIASPGATRSNDMFRVLDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGII-MNRTINNFKIP 297 (479)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 297 (479)
...... ...... ..+.+.. .+ .......+.++......++.....++..+.+..+.+..+... .+.+ ...
T Consensus 250 ~~~~~~-~~~~~~-~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 320 (491)
T 4aps_A 250 INLLTI-VAIAIP-VFYFAWM-IS--SVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFP 320 (491)
T ss_dssp HHHHHH-HHHHHH-HHHHHHH-C--------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSC
T ss_pred hhhhhH-HHHHHH-HHHHHHH-hh--cccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccC
Confidence 000000 000000 0000000 00 000011233344444555556666666666655544433211 1111 134
Q ss_pred cccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHH
Q 011716 298 TQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLV 377 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (479)
.+.....+.+..++..++.+++.||++||.. ...+++..+.++.++++..+...... ..++...+.++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 390 (491)
T 4aps_A 321 VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP------SSPTKFAVGLMFAGLSFLLMAIPGAL----YGTSGKVSPLWLV 390 (491)
T ss_dssp SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHH----CCCCTTCCTHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhccCC------CchHHHHHHHHHHHHHHHHHHHHHHh----cCCCCCccHHHHH
Confidence 5566666777778888888999888877632 34556778888888887777664321 0111124566777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHH
Q 011716 378 WQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLF 457 (479)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
+..++.+++++...+..++++.+..|+++||+++|+.++...+|+.+++.+.+.+.+ .+....
T Consensus 391 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~ 453 (491)
T 4aps_A 391 GSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAY 453 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHH
Confidence 888999999999999999999999999999999999999999999999999877541 122345
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011716 458 YALLCILNFINFLNYIYW 475 (479)
Q Consensus 458 f~~~~~~~l~~~~~~~~~ 475 (479)
|..++++++++.++.+.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 454 FSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777766665555444
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=267.43 Aligned_cols=442 Identities=19% Similarity=0.299 Sum_probs=274.3
Q ss_pred ceeehhHHHHHHhhhhcC------CChhhHHHHHHHHHHHHHHHhhhhHhhhcccc-chhHHHHHHHHHHHHHHHHHHHH
Q 011716 2 VFLSNAINFVAYFLKSMH------YPAAESAIMVNNFMGTSFLLTIFGGFISDSFL-TRFTTFILFCTIELLGLILLTIQ 74 (479)
Q Consensus 2 ~~y~~~~~~~~yl~~~l~------~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~-Grk~~~~~~~~~~~~~~~l~~~~ 74 (479)
++|++.+.++.|+++++| +++.+++++.+.+.++..++++++|+++|| + |||+++..+..+.+++.++++++
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHh
Confidence 467788999999999999 999999999999999999999999999999 8 99999999999999999988876
Q ss_pred hhhcccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHH
Q 011716 75 AQYSRLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVW 154 (479)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~ 154 (479)
+. +.+.+++.|++.|++.+...|+..+++.|++|+++|+++...+++.+...++|.++||.++++
T Consensus 106 ~~---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 106 EH---------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp SS---------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred cc---------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 30 455788899999999999999999999999999885444566677999999999999999999
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhh---------ccCCC
Q 011716 155 IEENRGWNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQ---------IASPG 225 (479)
Q Consensus 155 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 225 (479)
+.+..|||+.|++.++..+++.+..+...++.++++|++++..+..+......++++.+.++.... ....+
T Consensus 171 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (524)
T 2xut_A 171 LLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALV 250 (524)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGG
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhc
Confidence 998899999999888776666555554444332222222211111111111111110000000000 00000
Q ss_pred -CC-----------------CCCCcchh--hhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhh
Q 011716 226 -AT-----------------RSNDMFRV--LDKALFDDTITAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGI 285 (479)
Q Consensus 226 -~~-----------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (479)
.+ ...+ .+| +|..+.. .+..+.++.++.......+.....++..+.+..+.+..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (524)
T 2xut_A 251 NIPTLGIVAGLCCAMVLVMGFVGA-GASLQLERARKS--HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAN 327 (524)
T ss_dssp GTTTTCSSHHHHHHHHHHHHHHHT-GGGTHHHHSCCS--CCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhccccc-chhhHHhhhhcc--ccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHH
Confidence 00 0000 111 1111000 11111233344444444444455555555555555555433
Q ss_pred hcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011716 286 IMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAA 365 (479)
Q Consensus 286 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~ 365 (479)
.++.+. + .+.+.....+.+..++..++.+++..+..+|.. .+.+..+++..|+++.+++++.+...+.. .
T Consensus 328 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~ 397 (524)
T 2xut_A 328 DMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG---VKLTALRKMGAGIAITGLSWIVVGTIQLM----M 397 (524)
T ss_dssp HSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTT----T
T ss_pred hcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 333221 0 234555666666777777888877544334321 22345566777888877777666543210 0
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccC
Q 011716 366 ENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLG 445 (479)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~ 445 (479)
+++...+.+++++.+++.+++++...+..++++.+.+|+++||+++|+.++...+|+.+++.+.+.+.+.... +|.+
T Consensus 398 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~---~~~~ 474 (524)
T 2xut_A 398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT---EQIV 474 (524)
T ss_dssp TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH---HHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cccc
Confidence 0011235667778889999999999999999999999999999999999999999999999999876521100 1211
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 446 GNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 446 ~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
.... +.....|++++++++++.+.++.+.+
T Consensus 475 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 475 QTGM--SVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHS--CHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccc--cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00123367777777777666655543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=242.55 Aligned_cols=374 Identities=9% Similarity=-0.037 Sum_probs=243.8
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHH----Hhhhcccccc
Q 011716 8 INFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTI----QAQYSRLQPA 83 (479)
Q Consensus 8 ~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~ 83 (479)
....+++.+++ .++.+.+++.+.+.++..++++++|+++|| +|||++++.+..+.+++.+++++ ++
T Consensus 48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------- 117 (451)
T 1pw4_A 48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATS-------- 117 (451)
T ss_dssp HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHS--------
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccc--------
Confidence 33444556678 999999999999999999999999999999 89999999999999999999998 65
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-hh
Q 011716 84 MNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-WN 162 (479)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w~ 162 (479)
+.+.+++.|+++|++.+...|...+++.|.+|+++ |++++++.....++|.+++|.+++++.+..| ||
T Consensus 118 --------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~ 186 (451)
T 1pw4_A 118 --------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 186 (451)
T ss_dssp --------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred --------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 56688899999999999999999999999999888 9999999999999999999999999888888 99
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhccc
Q 011716 163 CSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFD 242 (479)
Q Consensus 163 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
+.|++.++..++..+..+...|+.+++..+.+.. +.+...+++ .. .++.++ .
T Consensus 187 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~---~~---~~~~~~-~--------- 238 (451)
T 1pw4_A 187 AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE------------EYKNDYPDD---YN---EKAEQE-L--------- 238 (451)
T ss_dssp TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT------------TTCCC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh------------hhccccccc---ch---hhhhcc-c---------
Confidence 9999888776655555444444422221110000 000000000 00 000000 0
Q ss_pred CCCcchhhhhhhhhhh---hhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchh
Q 011716 243 DTITAAQVEETKTFLG---LLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERS 319 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 319 (479)
+.++. ..+..++ .....+........+.....++..+ +....+......+.......+..++..++.+++
T Consensus 239 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 239 ---TAKQI-FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY---LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp ---CCTHH-HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccc-hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0011111 1111122222222221111222211 111111001122344445556667777788888
Q ss_pred hhhh--HhhhhccCCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 011716 320 VHIF--ERKISAKYNIFRPLKRIGLGLALAS-GSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLE 396 (479)
Q Consensus 320 ~~~~--~~r~~~~~~~~~~~~~i~~g~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 396 (479)
.||+ ++|.. +..+.++.. ++++.+.... ..+.+......++.+++.....+..+.
T Consensus 312 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 369 (451)
T 1pw4_A 312 SDKVFRGNRGA-----------TGVFFMTLVTIATIVYWMNP-----------AGNPTVDMICMIVIGFLIYGPVMLIGL 369 (451)
T ss_dssp HHHTSTTCHHH-----------HHHHHHHHHHHHHHHTTSCC-----------TTCHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHhcCCchh-----------HHHHHHHHHHHHHHHHHHhc-----------ccCHHHHHHHHHHHHHHHhchHHHHHH
Confidence 8776 55432 444444433 4444443311 124555666777888888888888899
Q ss_pred hhcccCCcchHHHHHHHHHHHHhh-hHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 011716 397 FFYSEAPHSMRSISTALSWCSTSM-GYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYW 475 (479)
Q Consensus 397 ~~~~~~P~~~rg~~~g~~~~~~~l-g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~ 475 (479)
+..+..|++.||++.|+.+....+ |..+++.+.+.+.+. .++...|++++++.+++.+..+..
T Consensus 370 ~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 370 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----------------FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------------SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999886521 123556777777777666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-26 Score=230.47 Aligned_cols=333 Identities=11% Similarity=0.039 Sum_probs=223.0
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHH---HHHhhhccccc
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILL---TIQAQYSRLQP 82 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~---~~~~~~~~~~~ 82 (479)
....+.+++.+++|+++.+.+++.+.+.++..++.++.|+++|| +|||++++.+..+.+++.+++ +.++
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~------- 115 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIM------- 115 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccccc-------
Confidence 34445556788999999999999999999999999999999999 899999999999999999988 5554
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHh-hccc-
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIE-ENRG- 160 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~-~~~g- 160 (479)
+.+.+++.|++.|++.+...+..+++++|++|+++ |++.+++.....++|.+++|.+++++. +..+
T Consensus 116 ---------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 116 ---------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred ---------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 77789999999999999999999999999999988 999999999999999999999999998 5444
Q ss_pred ------------------------hhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccc
Q 011716 161 ------------------------WNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSE 216 (479)
Q Consensus 161 ------------------------w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (479)
||+.|++.+....+..+..+..+. ++.++++++ +.+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~---------------~~~~~~ 246 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHS---------------DAKQGS 246 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCC---------------CSSTTS
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccccc---------------cccccc
Confidence 999998766554444433333211 111111000 000000
Q ss_pred hhhhccCCCCCCCCCcchhhhhhcccCCCcchhhhhhhhhhhhh-hHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcc
Q 011716 217 MTEQIASPGATRSNDMFRVLDKALFDDTITAAQVEETKTFLGLL-PIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFK 295 (479)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (479)
.. .++.+. -..+...... ..+...........+.+.++.++..+.+ .
T Consensus 247 -------------~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~ 294 (438)
T 3o7q_A 247 -------------FS-ASLSRL------------ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------A 294 (438)
T ss_dssp -------------HH-HHHHHH------------TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------H
T ss_pred -------------hh-hhHHHH------------HhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------h
Confidence 00 000000 0001111111 1111111111111111112021211111 1
Q ss_pred cCcccccccccceeehhhhccchhhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHH
Q 011716 296 IPTQSLTVFPLTIMLASIPLYERSVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFW 375 (479)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (479)
...+.......+..++..++.+++.||+++|.. +..+.++..++.+..... +..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-----------~~~~~~~~~~~~~~~~~~--------------~~~~ 349 (438)
T 3o7q_A 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-----------LAAYALIAMALCLISAFA--------------GGHV 349 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-----------HHHHHHHHHHHHHHHHHC--------------CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-----------HHHHHHHHHHHHHHHHHc--------------CCcH
Confidence 123344444456666777888888888877643 566666666665555442 1223
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011716 376 LVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTALSWCSTSMGYFLSSALVSITNL 434 (479)
Q Consensus 376 l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~i~~ 434 (479)
.+..+++.+++.+...|..+.+..+..|++ ++++.+... ...+|+.+++.+.+.+.+
T Consensus 350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 350 GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 344557888888889999999999999977 999998877 677999999999988763
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=229.57 Aligned_cols=401 Identities=13% Similarity=0.045 Sum_probs=220.6
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC--CCCCchhHHHHHH
Q 011716 21 PAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN--RRPSHTQAAILYT 98 (479)
Q Consensus 21 ~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 98 (479)
++.+.|++.+++.++..++++++|+++|| +|||++++++..++.+++++++++........... ......+...+++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 34667899999999999999999999999 89999999999999999999986421000000000 0001127789999
Q ss_pred HHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc--------cchhhHHHHHHH
Q 011716 99 GLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN--------RGWNCSFKISAV 170 (479)
Q Consensus 99 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~--------~gw~~~f~i~~~ 170 (479)
+|+++|+|.|+..+..+.+++|..|+++ |++..+.......+|.++++.++..+... .+||..+.+..+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~---rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHI---RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHh---hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence 9999999999999999999999999988 89989998889999999998887776532 346666665554
Q ss_pred HHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhh
Q 011716 171 ALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQV 250 (479)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
..++.++. ....|+.|+--..+.+.++..+.......+........ +. ....+. .++.
T Consensus 209 ~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~--~~-----------~~~~~~--------~~~~ 266 (491)
T 4gc0_A 209 PALLFLML-LYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ--EI-----------KHSLDH--------GRKT 266 (491)
T ss_dssp HHHHHHHH-GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH--HH-----------HHHHHH--------HHHH
T ss_pred hhhhhhhh-hhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH--HH-----------HHHHHh--------hhhh
Confidence 43333322 22333322210001111111111111100000000000 00 000000 0000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhcc
Q 011716 251 EETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAK 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~ 330 (479)
................................+........+..............+..++...+..++.||++||..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-- 344 (491)
T 4gc0_A 267 GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-- 344 (491)
T ss_dssp TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH--
T ss_pred hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch--
Confidence 000000010111111111111100000001111101111111001111222333345556667777888888888754
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHH-HHHHHHHHHhhhhhhhhhcccCCcchHHH
Q 011716 331 YNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQY-LLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409 (479)
Q Consensus 331 ~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~rg~ 409 (479)
...+.....+++..++..... ..+.+..+... +..........|..+.+..|.+|.+.|++
T Consensus 345 ---------~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~ 406 (491)
T 4gc0_A 345 ---------QIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGK 406 (491)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHH
T ss_pred ---------hccchHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHH
Confidence 555666666665555443221 11222222222 22223333445777889999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 410 STALSWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 410 ~~g~~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
++|+.+..+.+++.+++.+.+.+.... |.. ...+....|++++++++++.++.+++.+
T Consensus 407 ~~g~~~~~~~~~~~i~~~~~p~l~~~~------~~~----~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 407 ALAIAVAAQWLANYFVSWTFPMMDKNS------WLV----AHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHCHHH------HHH----HHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----hhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 999999999999999998887753211 000 0112334577888888877776655544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-26 Score=224.64 Aligned_cols=324 Identities=11% Similarity=0.071 Sum_probs=215.6
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCch
Q 011716 12 AYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHT 91 (479)
Q Consensus 12 ~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (479)
+.+.+++|.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+..+..++..+++.++
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---------------- 86 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTS---------------- 86 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc----------------
Confidence 33567899999999999999999999999999999999 8999999999999999999998886
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHH
Q 011716 92 QAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSFKISAVA 171 (479)
Q Consensus 92 ~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~ 171 (479)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.++......++|..++|.+++++.+++|||+.|++.++.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ---LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 77789999999999999999999999999999888 999999999999999999999999999888999999987766
Q ss_pred HHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCCcchhhh
Q 011716 172 LGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTITAAQVE 251 (479)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
.++..+......|+ +++++++ +++ . .+ ++ ++.-
T Consensus 164 ~~~~~~~~~~~~~~---~~~~~~~-------------~~~---~-------------~~---~~------------~~~~ 196 (375)
T 2gfp_A 164 CAGVTFSMARWMPE---TRPVDAP-------------RTR---L-------------LT---SY------------KTLF 196 (375)
T ss_dssp HHHHHCCCCCSSCC---CSTTTCC-------------CCC---T-------------TT---CS------------THHH
T ss_pred HHHHHHHHHHHCcc---cCCCCcc-------------ccc---H-------------HH---HH------------HHHh
Confidence 55444322222222 1111000 000 0 00 00 0001
Q ss_pred hhhhhhhhh-hHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHhhhhcc
Q 011716 252 ETKTFLGLL-PIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFERKISAK 330 (479)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~ 330 (479)
..+...... ................+ .+.++..+.+.. ..+.......+..++..++.+++.||.+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---- 265 (375)
T 2gfp_A 197 GNSGFNCYLLMLIGGLAGIAAFEACSG-VLMGAVLGLSSM------TVSILFILPIPAAFFGAWFAGRPNKRFSTL---- 265 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS-CSSHHHHHHHHH------HHHHHHHTHHHHHHHHHHHHHTTTTHHHHH----
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 111111111 11111111111111111 222221122211 223334444455555556666665554432
Q ss_pred CCCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcchHHH
Q 011716 331 YNIFRPLKRIGLGLAL-ASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSI 409 (479)
Q Consensus 331 ~~~~~~~~~i~~g~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~ 409 (479)
...+..+ ...+.......... ..+.+......++.+++.+...+....+..|..| ++||+
T Consensus 266 ---------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~ 326 (375)
T 2gfp_A 266 ---------MWQSVICCLLAGLLMWIPDWFG---------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGT 326 (375)
T ss_dssp ---------HHHHHHHHHHTSSSSSHHHHHH---------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhhc---------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccch
Confidence 3333333 22222211111100 1144556667788899999999999999999999 88999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhh
Q 011716 410 STALSWCSTSMGYFLSSALVSIT 432 (479)
Q Consensus 410 ~~g~~~~~~~lg~~~~~~l~~~i 432 (479)
+.|+.+....+|..+++.+.+.+
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888887665
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-24 Score=215.11 Aligned_cols=370 Identities=11% Similarity=0.009 Sum_probs=211.0
Q ss_pred ehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHH---HHHhhhcccc
Q 011716 5 SNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILL---TIQAQYSRLQ 81 (479)
Q Consensus 5 ~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~---~~~~~~~~~~ 81 (479)
...++++.|+++++|+++.++|++.+.+.++..++++++|+++|| +||||+++.+..+..++.... ....
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~------ 97 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGP------ 97 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHH------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 345789999998999999999999999999999999999999999 899999999888776533211 2221
Q ss_pred cccCCCCCchhH-HHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 82 PAMNRRPSHTQA-AILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 82 ~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
.. ..+..++.+.+++.+...+...+...+..++.. ++++..++......++|..++|.+++++.+ .+
T Consensus 98 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~ 165 (417)
T 2cfq_A 98 ----------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-RRSNFEFGRARMFGCVGWALGASIVGIMFT-IN 165 (417)
T ss_dssp ----------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 00 012334555555555555555555555443322 225656666666788999999999999987 68
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhc
Q 011716 161 WNCSFKISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKAL 240 (479)
Q Consensus 161 w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (479)
|+..|++.++..++..+. ....++ + +++..+. ++++ +.. .+..+..++.+
T Consensus 166 ~~~~f~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~-----------~~~~-~~~-----------~~~~~~~~~~~--- 215 (417)
T 2cfq_A 166 NQFVFWLGSGCALILAVL-LFFAKT--D-APSSATV-----------ANAV-GAN-----------HSAFSLKLALE--- 215 (417)
T ss_dssp SHHHHTTTTTTTTTHHHH-SCSSCC--C-CSCSSCS-----------SSSS-SSC-----------CCCCCHHHHHH---
T ss_pred hhHHHHHHHHHHHHHHHH-HHHcCc--c-ccccccc-----------cccc-ccc-----------cccccHHHHHH---
Confidence 999998765553333222 111111 1 1100000 0000 000 00000000000
Q ss_pred ccCCCcchhhhhhhhhhhhhhHHHHHHHHHHhh-hcccchhhhhhhhcccCCCCcc-cCcccccccccceeehhhhccch
Q 011716 241 FDDTITAAQVEETKTFLGLLPIFASTIMMNCCL-AQLQTFSVQQGIIMNRTINNFK-IPTQSLTVFPLTIMLASIPLYER 318 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 318 (479)
.-..++..............+..+ .+.+.++..+ .+.. +.+ ...+....++.+..++...+.++
T Consensus 216 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~ 281 (417)
T 2cfq_A 216 ---------LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF---FATG--EQGTRVFGYVTTMGELLNASIMFFAPL 281 (417)
T ss_dssp ---------HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111111111111111111 1111111111 1100 000 01123333344455566777888
Q ss_pred hhhhhHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011716 319 SVHIFERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFF 398 (479)
Q Consensus 319 l~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 398 (479)
+.||+++|.. +..+.++.++++...... .+.+.++...++.+++.....+..+.+.
T Consensus 282 l~dr~g~~~~-----------l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 282 IINRIGGKNA-----------LLLAGTIMSVRIIGSSFA-------------TSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHCHHHH-----------HHHHHHHHHHHHHHHTTC-------------CSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHH-----------HHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877743 555666666555444321 2334455555666777766777778899
Q ss_pred cccCCcchHHHHHHH-HHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 399 YSEAPHSMRSISTAL-SWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 399 ~~~~P~~~rg~~~g~-~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
.|..|++.||++.+. ++....+|+.++|.+.|.+.+ ..++...|.+++++.+++.+.++.+.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999998 488888999999999987541 223455677888887777766555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=131.56 Aligned_cols=161 Identities=11% Similarity=0.100 Sum_probs=135.1
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhcccc--chhHHHHHHHHHHH-HHHHHHHHHhhhcc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFL--TRFTTFILFCTIEL-LGLILLTIQAQYSR 79 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~--Grk~~~~~~~~~~~-~~~~l~~~~~~~~~ 79 (479)
++++..+++.|+++.+|+++.+++++.+.+.++..++.++.|+++|| + |||+.+..+..+.. ++.++..+..
T Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 342 (451)
T 1pw4_A 268 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNP---- 342 (451)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhc----
Confidence 45677888999998899999999999999999999999999999999 8 99999888777766 5555544331
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhh-hHHHHHHHHHHHhhc
Q 011716 80 LQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCA-GGLVAATVMVWIEEN 158 (479)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-g~~ig~~~~~~l~~~ 158 (479)
..+...+.+..++.|++.+...+...+++.|.+|+++ |+++.++.....++ |..++|.+.|++.++
T Consensus 343 ----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 343 ----------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---AGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1144566677788899889999999999999999888 99999999999999 999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHh
Q 011716 159 RGWNCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 159 ~gw~~~f~i~~~~~~~~~~~~~~ 181 (479)
.||+..|++.+++.+++.+..+.
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888776666555444
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-11 Score=120.17 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=122.3
Q ss_pred eehhHHHHHH-hhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 4 LSNAINFVAY-FLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 4 y~~~~~~~~y-l~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
+++...++.| +++.+|.++.++++..+.+.++..++.+++|+++|| +|||+++..+..+..++.++....+
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~------- 346 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG------- 346 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC-------
Confidence 4556788999 888889999999999999999999999999999999 8999999999988888887776663
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc-h
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG-W 161 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g-w 161 (479)
+... .+..++.+++.+...|...++..|.+|++ ++.+.++.. ...+|..++|.+.|++.+..| +
T Consensus 347 ---------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~ 411 (438)
T 3o7q_A 347 ---------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD----TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI 411 (438)
T ss_dssp ---------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG----HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS
T ss_pred ---------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcch
Confidence 3323 33457888999999999999999998854 344444444 567999999999999999988 9
Q ss_pred hhHHHHHHHHHHHHH
Q 011716 162 NCSFKISAVALGLAL 176 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~ 176 (479)
+..|++.+++.++.+
T Consensus 412 ~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 412 PTAELIPALCFAVIF 426 (438)
T ss_dssp GGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999997665544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=123.61 Aligned_cols=154 Identities=10% Similarity=-0.017 Sum_probs=117.1
Q ss_pred HHHHHHhhhhcCC---ChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 011716 8 INFVAYFLKSMHY---PAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAM 84 (479)
Q Consensus 8 ~~~~~yl~~~l~~---~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (479)
..++.|+.+.++. +..+.+...+...++..++.++.|+++|| +|||+++..+..+.+++..+.++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~--------- 310 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT--------- 310 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 4567787766653 23455677777777888899999999999 8999999988888777766655442
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhH-HHHHHhhhHHHHHHHHHHHhhccchhh
Q 011716 85 NRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNW-FFFSLCAGGLVAATVMVWIEENRGWNC 163 (479)
Q Consensus 85 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ig~~ig~~~~~~l~~~~gw~~ 163 (479)
+...+.+...+.+++.+...+...++..|.+|++. |++..+. +.....+|.+++|.++|++.++.|++.
T Consensus 311 -------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~ 380 (417)
T 2cfq_A 311 -------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF---SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp -------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHH
Confidence 34455566667777777667777889999999877 8888777 466778999999999999998889998
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011716 164 SFKISAVALGLALCIFTI 181 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~ 181 (479)
.|.+.++..+++.+..+.
T Consensus 381 ~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 381 AYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 998877776666555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-10 Score=115.57 Aligned_cols=169 Identities=8% Similarity=-0.000 Sum_probs=126.5
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHH-----HHHHHHHHHHHHHHHHhhhc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFI-----LFCTIELLGLILLTIQAQYS 78 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-----~~~~~~~~~~~l~~~~~~~~ 78 (479)
+.....++.|+++.++.+..+.++..+...+...++.++.|++.|| +|||+... .+..+.+++..+........
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY 378 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677888888889888888999999999999999999999999 79987655 66666666666655542110
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc
Q 011716 79 RLQPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN 158 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~ 158 (479)
. .+...+...+.+..++.|++.+...|...+++.|.+|++. |+.+.++.....++|..+++.+.+++.+
T Consensus 379 ~-------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~i~~~~~~~~~~- 447 (491)
T 4aps_A 379 G-------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---NSQMMSMWFLSSSVGSALNAQLVTLYNA- 447 (491)
T ss_dssp C-------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC---SSSSTHHHHHHHHHHHHHHHHHGGGGGG-
T ss_pred C-------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 0 0111144566677888999999999999999999999988 9999999999999999999999988875
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhcc
Q 011716 159 RGWNCSFKISAVALGLALCIFTIGFP 184 (479)
Q Consensus 159 ~gw~~~f~i~~~~~~~~~~~~~~~~~ 184 (479)
.++...|.+.+...+++.+..+...+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777766665555555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-08 Score=101.56 Aligned_cols=161 Identities=10% Similarity=-0.034 Sum_probs=114.1
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 011716 10 FVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPS 89 (479)
Q Consensus 10 ~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 89 (479)
..+++.+..+.+..+.........+...++.++++++.|| +|||+.++.+.....++.+..+..... ..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~----------~~ 367 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYT----------QA 367 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHT----------TC
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhc----------cc
Confidence 3445556788888888887778888899999999999999 899999999988888877766554311 11
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhh------ccchhh
Q 011716 90 HTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEE------NRGWNC 163 (479)
Q Consensus 90 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~------~~gw~~ 163 (479)
...........+..+.+ .+..|....+.+|.+|.+. |+++.++......+|..+++.+.+.+.+ ..++..
T Consensus 368 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~---R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI---RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT---HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 11121222222222222 2334677889999999988 9999999888889999988888766643 235566
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 011716 164 SFKISAVALGLALCIFTIGFPI 185 (479)
Q Consensus 164 ~f~i~~~~~~~~~~~~~~~~~~ 185 (479)
.|++.+++.+++.+..++..||
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHheecC
Confidence 7887777777776666666664
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-09 Score=105.08 Aligned_cols=147 Identities=9% Similarity=-0.032 Sum_probs=111.9
Q ss_pred eehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHH-HHHHHH--HHHHHhhhccc
Q 011716 4 LSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTI-ELLGLI--LLTIQAQYSRL 80 (479)
Q Consensus 4 y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~-~~~~~~--l~~~~~~~~~~ 80 (479)
++....++.|+++++|.++.+.+.+.+...++..++.++.|+++|| +||+. ..+..+ ...+.. ......
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~--~~~~~~~~~~~~~~~~~~~~~----- 287 (375)
T 2gfp_A 216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLM--WQSVICCLLAGLLMWIPDWFG----- 287 (375)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHHH--HHHHHHHHHTSSSSSHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHhhhc-----
Confidence 3445566677777799999999999999999999999999999999 78832 223322 222222 222210
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccc
Q 011716 81 QPAMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRG 160 (479)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~g 160 (479)
..+.+.+.+..++.|++.+...|...++..|..| ++ |+++.+......++|..++|.+.+.+.+..+
T Consensus 288 ---------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~---~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 288 ---------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL---AGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH---HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred ---------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc---cchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 0144556677788999999999999999999987 66 8999999999999999999999999988778
Q ss_pred hhhHHHHHHHH
Q 011716 161 WNCSFKISAVA 171 (479)
Q Consensus 161 w~~~f~i~~~~ 171 (479)
|+..+.+.+..
T Consensus 355 ~~~~~~~~~~~ 365 (375)
T 2gfp_A 355 GSLGLLMTLMG 365 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 88777764433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=89.89 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=101.8
Q ss_pred cccccccccceeehhhhccchhhhhh-HhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHH
Q 011716 298 TQSLTVFPLTIMLASIPLYERSVHIF-ERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWL 376 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~l~~~~-~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (479)
.++......+...+..++.+++.||+ ++|.. +..+.++..++.+..... ..+.+.+
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-----------~~~~~~~~~~~~~~~~~~------------~~~~~~~ 112 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-----------ILWLSLIYCVGHAFLAIF------------EHSVQGF 112 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-----------HHHHHHHHHHHHHHHHHT------------SSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-----------HHHHHHHHHHHHHHHHHh------------cccHHHH
Confidence 34555555667778888899999998 77754 677777777777666652 1145667
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCCcchHHHHHHH---HHHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhh
Q 011716 377 VWQYLLLGVSDMLTLGGMLEFFYSEAPHSMRSISTAL---SWCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHAR 453 (479)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+...++.|++.+...+...+++.+.+|++.|++..+. .+....+|..+++.+.+.+.. ..+
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----------------~~g 176 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK----------------NFG 176 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH----------------TSC
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------ccc
Confidence 7778999999999999999999999999999877666 888888999999988876541 123
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011716 454 LDLFYALLCILNFINFLNYI 473 (479)
Q Consensus 454 ~~~~f~~~~~~~l~~~~~~~ 473 (479)
++..|++.+++.+++.+.+.
T Consensus 177 ~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 177 AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777666555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.21 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.17 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.9e-27 Score=234.71 Aligned_cols=356 Identities=8% Similarity=-0.061 Sum_probs=219.7
Q ss_pred hHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 011716 7 AINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNR 86 (479)
Q Consensus 7 ~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (479)
.+.+.++++ ++|+|++|.|++.+++.++..++++++|+++|| +|||+++..+..+.+++.++++++...+.
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~------- 114 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATS------- 114 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHS-------
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhhh-------
Confidence 355566776 589999999999999999999999999999999 89999999999999999999887642221
Q ss_pred CCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhc-cchhhHH
Q 011716 87 RPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEEN-RGWNCSF 165 (479)
Q Consensus 87 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~-~gw~~~f 165 (479)
+...+++.|++.|++.|...+...++++|++|+++ |++++++.....++|.+++|.+++.+... .+||+.|
T Consensus 115 -----~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~ 186 (447)
T d1pw4a_ 115 -----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186 (447)
T ss_dssp -----SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred -----hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc---ccccccccccccchhhhhhhhhhhhHhhhhhcccccc
Confidence 55688999999999999999999999999999988 99999999999999999999998887664 4799999
Q ss_pred HHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCC
Q 011716 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTI 245 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
++.+....+..+..+...++.+++....... +.+.+.++. ..++ .++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~---~~~~-~~~~~~-------------- 236 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMMRDTPQSCGLPPIE------------EYKNDYPDD---YNEK-AEQELT-------------- 236 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT------------TTCCC-----------------C--------------
T ss_pred hhhhhhHHHHHHHHHHhcccchhhcccchhh------------hhhhhcccc---hhhc-cccccc--------------
Confidence 9887776655555555444332221111000 000000000 0000 000000
Q ss_pred cchhhhhhhhhhhhhhHH---HHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhh
Q 011716 246 TAAQVEETKTFLGLLPIF---ASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHI 322 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 322 (479)
. +....+..++...++ ...............+... .+....+.-....+.......+..++...+.+++.||
T Consensus 237 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 237 -A-KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT---YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp -C-THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -h-hhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhh---hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh
Confidence 0 000111111111111 1111111111111111111 1111111001122333444455556666777777777
Q ss_pred hHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccC
Q 011716 323 FERKISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEA 402 (479)
Q Consensus 323 ~~~r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (479)
..++.. .........+..+........ ...+.+..+...++.+++.....+....+..|.+
T Consensus 312 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 372 (447)
T d1pw4a_ 312 VFRGNR--------GATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA 372 (447)
T ss_dssp TSTTCH--------HHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred cccccc--------ccccchhHHHHHHHHHHHHhc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 665421 111222222222222211110 1224555666677888888888888999999999
Q ss_pred CcchHHHHHHHHHHHHhh-hHHHHHHHHhhhh
Q 011716 403 PHSMRSISTALSWCSTSM-GYFLSSALVSITN 433 (479)
Q Consensus 403 P~~~rg~~~g~~~~~~~l-g~~~~~~l~~~i~ 433 (479)
|++.||++.|+.+....+ |..+++.+.+.+.
T Consensus 373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~ 404 (447)
T d1pw4a_ 373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 404 (447)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887776 4566788887765
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.9e-24 Score=209.43 Aligned_cols=375 Identities=10% Similarity=-0.030 Sum_probs=217.6
Q ss_pred hhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 011716 6 NAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMN 85 (479)
Q Consensus 6 ~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (479)
..+.++.|+++++|+|++|.|++.+++.++..+++++.|+++|| +||||+++.+..+..++..+.......+.
T Consensus 26 ~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~------ 98 (417)
T d1pv7a_ 26 YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPL------ 98 (417)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHHTHHHHHHHTHHHH------
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHhhhhhh------
Confidence 45678889999999999999999999999999999999999999 89999999999999998888877642110
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHHHhhccchhhHH
Q 011716 86 RRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCAGGLVAATVMVWIEENRGWNCSF 165 (479)
Q Consensus 86 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~~~l~~~~gw~~~f 165 (479)
........+.+.+.+.+...+.......+..++++ +++....+........+..+++.+++.+.+. +|+..+
T Consensus 99 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 170 (417)
T d1pv7a_ 99 ------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-RRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVF 170 (417)
T ss_dssp ------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH-HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred ------HHHHHHHHHHHhhhcccccccchhhcccccccchh-hhhHHHHHHHhhhhccccccccccccccccc-cccccc
Confidence 11123344444444444444444444443333222 2245556666778888999999999988774 555555
Q ss_pred HHHHHHHHHHHHHHHhhcccceecCCCCCchhhHHHHHHHHHhhccccccchhhhccCCCCCCCCCcchhhhhhcccCCC
Q 011716 166 KISAVALGLALCIFTIGFPIYRYKRPSGSPITRIFKVIASAIRNRKASRSEMTEQIASPGATRSNDMFRVLDKALFDDTI 245 (479)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
........+..+......++.+..++++++ +++.+.. .. .....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~--------------~~-~~~~~-------- 214 (417)
T d1pv7a_ 171 WLGSGCALILAVLLFFAKTDAPSSATVANA-------------VGANHSA--------------FS-LKLAL-------- 214 (417)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSCSSSCSSHH-------------HHSCCCC--------------CC-HHHHH--------
T ss_pred cchhhHHHHHHHHHHHHhcccccchhhhhh-------------hhhhccc--------------cc-ccccc--------
Confidence 555544444444444433332221111100 0000000 00 00000
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHHhhhcccchhhhhhhhcccCCCCcccCcccccccccceeehhhhccchhhhhhHh
Q 011716 246 TAAQVEETKTFLGLLPIFASTIMMNCCLAQLQTFSVQQGIIMNRTINNFKIPTQSLTVFPLTIMLASIPLYERSVHIFER 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 325 (479)
+....+.........................+... ....................+...+...+.+++.||.++
T Consensus 215 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 288 (417)
T d1pv7a_ 215 ---ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS---FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG 288 (417)
T ss_dssp ---HHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCH
T ss_pred ---cccccccccchhhhhHHHHHHHHhhhccccccccc---cccccccchhhhcccccccccccccchhhhhhhhccccc
Confidence 00000011111101111111111111111111100 000000000011122222334445555566666666555
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCcc
Q 011716 326 KISAKYNIFRPLKRIGLGLALASGSMAVAAVVESTRRAAAENHVTLSVFWLVWQYLLLGVSDMLTLGGMLEFFYSEAPHS 405 (479)
Q Consensus 326 r~~~~~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 405 (479)
|.. +..+.++..++.+.... ..+.+..+...++.+++.+...+....++.+.+|++
T Consensus 289 ~~~-----------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 344 (417)
T d1pv7a_ 289 KNA-----------LLLAGTIMSVRIIGSSF-------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HHH-----------HHHHHHHHHHHHHHHHT-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred ccc-----------hhhhHHHHHHhhhcccc-------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh
Confidence 533 66777777766666654 235666777788999999999999999999999999
Q ss_pred hHHHHHHHH-HHHHhhhHHHHHHHHhhhhccccCCCCcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011716 406 MRSISTALS-WCSTSMGYFLSSALVSITNLVSGKFGGEWLGGNDLNHARLDLFYALLCILNFINFLNYIYWAK 477 (479)
Q Consensus 406 ~rg~~~g~~-~~~~~lg~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~ 477 (479)
.|+++.|+. ++...+|..+++.+.|.+.+ ..++...|++++++.++..++..+..|
T Consensus 345 ~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp GHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999985 56678999999999987652 233456677888887777666555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=6.7e-12 Score=121.46 Aligned_cols=147 Identities=9% Similarity=-0.069 Sum_probs=122.9
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCchhHHHH
Q 011716 17 SMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQPAMNRRPSHTQAAIL 96 (479)
Q Consensus 17 ~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (479)
+.+.+..+.+.......++..++.++.|++.|| +|||+++..+..+.+++.++....+ +.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 315 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT----------------SALEV 315 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCC----------------CHHHH
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhcccccc----------------ccchh
Confidence 334556667777888888999999999999999 8999999999999998888887765 56677
Q ss_pred HHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHH-HHHHhhhHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 011716 97 YTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWF-FFSLCAGGLVAATVMVWIEENRGWNCSFKISAVALGLA 175 (479)
Q Consensus 97 ~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~ig~~ig~~~~~~l~~~~gw~~~f~i~~~~~~~~ 175 (479)
++..++.|++.+...+...+++.|.+|+++ |++..+.. .....+|..++|.+.|++.++.||+..|++.++..++.
T Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~ 392 (417)
T d1pv7a_ 316 VILKTLHMFEVPFLLVGCFKYITSQFEVRF---SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCGGG---HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999988 88888874 45667899999999999999999999999877776655
Q ss_pred HHHHHhhc
Q 011716 176 LCIFTIGF 183 (479)
Q Consensus 176 ~~~~~~~~ 183 (479)
.++..+..
T Consensus 393 ~~~~~~~l 400 (417)
T d1pv7a_ 393 TLISVFTL 400 (417)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhh
Confidence 55544443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=6.2e-11 Score=116.67 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=124.5
Q ss_pred eeehhHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHhhhhHhhhccccchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011716 3 FLSNAINFVAYFLKSMHYPAAESAIMVNNFMGTSFLLTIFGGFISDSFLTRFTTFILFCTIELLGLILLTIQAQYSRLQP 82 (479)
Q Consensus 3 ~y~~~~~~~~yl~~~l~~~~~~~g~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (479)
.++.....+.|+.+.++.+..+.++....+.+...++.+++|+++|| ++||+..........+..........
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------ 337 (447)
T d1pw4a_ 265 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWM------ 337 (447)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTS------
T ss_pred hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHHHHHHHHHHHHh------
Confidence 34566778999999999999999999999999999999999999999 78876554444333332222222110
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhccccccchhhhhcccCCCcchhhhhhhhhHHHHHHhh-hHHHHHHHHHHHhhccch
Q 011716 83 AMNRRPSHTQAAILYTGLYAMATGVGGVKAALPAHGADQLDHSNRRLISAFFNWFFFSLCA-GGLVAATVMVWIEENRGW 161 (479)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-g~~ig~~~~~~l~~~~gw 161 (479)
....+.....+..++.|++.++..+....+..|.+|++. |+++.++.+...++ |.+++|.+.|++.+++||
T Consensus 338 -----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~ 409 (447)
T d1pw4a_ 338 -----NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 409 (447)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred -----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 111245566677778888888889999999999999888 89999988777777 567789999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 011716 162 NCSFKISAVALGLALCIFTI 181 (479)
Q Consensus 162 ~~~f~i~~~~~~~~~~~~~~ 181 (479)
+..|++...+.+++.++...
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 410 DGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99988776665555444333
|