Citrus Sinensis ID: 011726
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | 2.2.26 [Sep-21-2011] | |||||||
| Q949V6 | 597 | Probable E3 ubiquitin-pro | yes | no | 1.0 | 0.800 | 0.742 | 0.0 | |
| Q84RR2 | 593 | Probable E3 ubiquitin-pro | no | no | 1.0 | 0.806 | 0.759 | 0.0 | |
| Q9LVX0 | 537 | Probable E3 ubiquitin-pro | no | no | 0.949 | 0.845 | 0.625 | 1e-170 | |
| Q9LVW9 | 529 | Putative E3 ubiquitin-pro | no | no | 0.953 | 0.862 | 0.613 | 1e-168 | |
| Q94981 | 503 | Protein ariadne-1 OS=Dros | yes | no | 0.826 | 0.785 | 0.337 | 2e-65 | |
| Q6NW85 | 533 | E3 ubiquitin-protein liga | yes | no | 0.859 | 0.771 | 0.331 | 3e-64 | |
| B1H1E4 | 529 | E3 ubiquitin-protein liga | yes | no | 0.859 | 0.776 | 0.333 | 3e-64 | |
| Q9Y4X5 | 557 | E3 ubiquitin-protein liga | yes | no | 0.859 | 0.737 | 0.333 | 6e-64 | |
| Q9Z1K5 | 555 | E3 ubiquitin-protein liga | yes | no | 0.859 | 0.740 | 0.333 | 6e-64 | |
| A2VEA3 | 555 | E3 ubiquitin-protein liga | yes | no | 0.859 | 0.740 | 0.333 | 6e-64 |
| >sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/482 (74%), Positives = 424/482 (87%), Gaps = 4/482 (0%)
Query: 1 MEDSFSGDED--YYYSDRDSLDGLENDEADLQWVPPKGSSTKVITRESLLAAQKEDLRRV 58
M+D FS +E+ YY SD+DSLDG++N+E++LQ + K S+T+VIT+ESLLAAQ+EDL RV
Sbjct: 1 MDDYFSAEEEACYYSSDQDSLDGIDNEESELQPLSSKRSNTQVITQESLLAAQREDLLRV 60
Query: 59 MELLSLREHHARTLLIHYRWDVEKLLAVLVENGKESLFNEAGVTVIDD--ADPMLPLSST 116
MELLS++EHHARTLLIHY+WDVEKL AV VE GK+SLF+ AGVTV D + P SS
Sbjct: 61 MELLSIKEHHARTLLIHYQWDVEKLFAVFVEKGKDSLFSGAGVTVFDYQYGNSSFPQSSQ 120
Query: 117 VMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176
+ CD+CME++ GD T+MDCGHCFCN+CWTEHF V+INEGQSKRIRCMAH+CNAICDE +
Sbjct: 121 MSCDVCMEDLPGDHMTRMDCGHCFCNNCWTEHFTVQINEGQSKRIRCMAHQCNAICDEDI 180
Query: 177 VRNLVSKKHPNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVECACGA 236
VR+LVSKK P+LA KF+R+LLES+IEDN+MVKWCPSTPHCGNAIR E+ ++CEVEC+CG
Sbjct: 181 VRSLVSKKRPDLAAKFDRYLLESYIEDNRMVKWCPSTPHCGNAIRAEDDKLCEVECSCGL 240
Query: 237 QFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVS 296
QFCFSCL +AHSPCSC MW+LW KKCRDESET+NWITVHTK CPKC+KPVEKNGGCNLV
Sbjct: 241 QFCFSCLCQAHSPCSCLMWELWRKKCRDESETINWITVHTKLCPKCYKPVEKNGGCNLVR 300
Query: 297 CICGQAFCWLCGGATGRDHTWSRIAGHSCGRYKEDKAKKTERAKRELYRYMHYHNRYKAH 356
CICGQ FCWLCGGATG DHT+ IAGHSCGRY++DK K+ ERAKR+L RY HYH+RYKAH
Sbjct: 301 CICGQCFCWLCGGATGSDHTYRSIAGHSCGRYQDDKEKQMERAKRDLNRYTHYHHRYKAH 360
Query: 357 TDSFKLESKLKETVLEKVSISEERESRLRDFSWVTNGLYRLFRSRRVLSYSYPFAFYMFG 416
TDS KLE KL++T+ EKVS SE+RE +L+DFSWVTNGL RLFRSRRVLSYSY FA+YMFG
Sbjct: 361 TDSSKLEDKLRDTIHEKVSKSEKRELKLKDFSWVTNGLDRLFRSRRVLSYSYAFAYYMFG 420
Query: 417 EELFKDEMTDEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYPDDKVMEIRMQVINL 476
EE+FKDEMT EEREIK++LFEDQQQQLE+NVEKLS+FLEEPFD++ +DKVM IR+Q+INL
Sbjct: 421 EEMFKDEMTPEEREIKKNLFEDQQQQLESNVEKLSQFLEEPFDEFSNDKVMAIRIQIINL 480
Query: 477 SV 478
SV
Sbjct: 481 SV 482
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Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q84RR2|ARI2_ARATH Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LVX0|ARI3_ARATH Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana GN=ARI3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LVW9|ARI4_ARATH Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana GN=ARI4 PE=5 SV=2 | Back alignment and function description |
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| >sp|Q94981|ARI1_DROME Protein ariadne-1 OS=Drosophila melanogaster GN=ari-1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6NW85|ARI1L_DANRE E3 ubiquitin-protein ligase arih1l OS=Danio rerio GN=arih1l PE=2 SV=1 | Back alignment and function description |
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| >sp|B1H1E4|ARI1_XENTR E3 ubiquitin-protein ligase arih1 OS=Xenopus tropicalis GN=arih1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Y4X5|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9Z1K5|ARI1_MOUSE E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus GN=Arih1 PE=2 SV=3 | Back alignment and function description |
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| >sp|A2VEA3|ARI1_BOVIN E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus GN=ARIH1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| 225428572 | 589 | PREDICTED: probable E3 ubiquitin-protein | 1.0 | 0.811 | 0.818 | 0.0 | |
| 449455196 | 589 | PREDICTED: probable E3 ubiquitin-protein | 0.997 | 0.809 | 0.832 | 0.0 | |
| 255556141 | 592 | Protein ariadne-1, putative [Ricinus com | 0.995 | 0.804 | 0.841 | 0.0 | |
| 224103473 | 591 | predicted protein [Populus trichocarpa] | 0.993 | 0.803 | 0.810 | 0.0 | |
| 359475257 | 573 | PREDICTED: probable E3 ubiquitin-protein | 0.966 | 0.806 | 0.793 | 0.0 | |
| 297836632 | 598 | hypothetical protein ARALYDRAFT_480784 [ | 1.0 | 0.799 | 0.759 | 0.0 | |
| 356538827 | 580 | PREDICTED: probable E3 ubiquitin-protein | 0.985 | 0.812 | 0.766 | 0.0 | |
| 356545317 | 580 | PREDICTED: probable E3 ubiquitin-protein | 0.995 | 0.820 | 0.766 | 0.0 | |
| 356538831 | 595 | PREDICTED: probable E3 ubiquitin-protein | 0.995 | 0.8 | 0.760 | 0.0 | |
| 18418437 | 597 | putative E3 ubiquitin-protein ligase ARI | 1.0 | 0.800 | 0.742 | 0.0 |
| >gi|225428572|ref|XP_002284665.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1 isoform 1 [Vitis vinifera] gi|297741410|emb|CBI32541.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/479 (81%), Positives = 434/479 (90%), Gaps = 1/479 (0%)
Query: 1 MEDSFSGDEDYYYSDRDSLDGLENDEADLQWVPPKGSSTKVITRESLLAAQKEDLRRVME 60
MED + DE+YYYSDRDS DGL N+E+D QWVPPK S++VIT+ESLL AQ++DLRRVM+
Sbjct: 1 MEDYANSDEEYYYSDRDSFDGLVNEESDFQWVPPKAPSSQVITKESLLTAQRDDLRRVMD 60
Query: 61 LLSLREHHARTLLIHYRWDVEKLLAVLVENGKESLFNEAGVTVIDDADPMLPLSS-TVMC 119
LLSLREHHARTLLIH+RWDVEKL AV+VE GK LF EAGV +++ LPLSS T+MC
Sbjct: 61 LLSLREHHARTLLIHHRWDVEKLFAVMVEKGKPCLFAEAGVPLMEHQIVPLPLSSSTLMC 120
Query: 120 DICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRN 179
DICME V +TKMDCGHCFCN+CWTEHF+V+INEGQS+RIRCMA+KCNAICDEA+VRN
Sbjct: 121 DICMEAVCSKDSTKMDCGHCFCNNCWTEHFVVRINEGQSRRIRCMAYKCNAICDEAIVRN 180
Query: 180 LVSKKHPNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVECACGAQFC 239
LV ++HP+LAEKF+RFLLES+IEDNKMVKWCPS PHCGNAIRVE+ E CEVEC+CG QFC
Sbjct: 181 LVGRRHPDLAEKFDRFLLESYIEDNKMVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFC 240
Query: 240 FSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCIC 299
FSCLSEAHSPCSC MW+ W KKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCIC
Sbjct: 241 FSCLSEAHSPCSCLMWEFWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCIC 300
Query: 300 GQAFCWLCGGATGRDHTWSRIAGHSCGRYKEDKAKKTERAKRELYRYMHYHNRYKAHTDS 359
GQAFCWLCGGATGRDHTWS I+GHSCGRYKED+ KK ERAKR+LYRYMHYHNRYKAHTDS
Sbjct: 301 GQAFCWLCGGATGRDHTWSSISGHSCGRYKEDREKKAERAKRDLYRYMHYHNRYKAHTDS 360
Query: 360 FKLESKLKETVLEKVSISEERESRLRDFSWVTNGLYRLFRSRRVLSYSYPFAFYMFGEEL 419
FKLESKLK+T+ KVS SEE+ES LRDFSWVTNGLYRLFRSRRVLSYSYPFAFYMFG++L
Sbjct: 361 FKLESKLKDTIKVKVSNSEEKESTLRDFSWVTNGLYRLFRSRRVLSYSYPFAFYMFGDDL 420
Query: 420 FKDEMTDEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYPDDKVMEIRMQVINLSV 478
F DEMT EEREIKQHLFEDQQQQLEANVEKLSKF+EEPFDQY +DKV +IRMQVINLSV
Sbjct: 421 FNDEMTKEEREIKQHLFEDQQQQLEANVEKLSKFIEEPFDQYEEDKVRDIRMQVINLSV 479
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455196|ref|XP_004145339.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Cucumis sativus] gi|449471519|ref|XP_004153333.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Cucumis sativus] gi|449502370|ref|XP_004161621.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255556141|ref|XP_002519105.1| Protein ariadne-1, putative [Ricinus communis] gi|223541768|gb|EEF43316.1| Protein ariadne-1, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224103473|ref|XP_002313070.1| predicted protein [Populus trichocarpa] gi|222849478|gb|EEE87025.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359475257|ref|XP_003631625.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297836632|ref|XP_002886198.1| hypothetical protein ARALYDRAFT_480784 [Arabidopsis lyrata subsp. lyrata] gi|297332038|gb|EFH62457.1| hypothetical protein ARALYDRAFT_480784 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356538827|ref|XP_003537902.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356545317|ref|XP_003541090.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356538831|ref|XP_003537904.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
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| >gi|18418437|ref|NP_567966.1| putative E3 ubiquitin-protein ligase ARI1 [Arabidopsis thaliana] gi|75332017|sp|Q949V6.1|ARI1_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase ARI1; AltName: Full=ARIADNE-like protein ARI1; AltName: Full=Protein ariadne homolog 1 gi|15292861|gb|AAK92801.1| unknown protein [Arabidopsis thaliana] gi|21436339|gb|AAM51339.1| unknown protein [Arabidopsis thaliana] gi|29125018|emb|CAD52883.1| ARIADNE-like protein ARI1 [Arabidopsis thaliana] gi|332660964|gb|AEE86364.1| putative E3 ubiquitin-protein ligase ARI1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| TAIR|locus:2052920 | 593 | ARI2 "ARIADNE 2" [Arabidopsis | 1.0 | 0.806 | 0.747 | 1.3e-203 | |
| TAIR|locus:2116184 | 597 | ARI1 "ARIADNE 1" [Arabidopsis | 1.0 | 0.800 | 0.730 | 5e-202 | |
| TAIR|locus:2089104 | 537 | ARI3 "ARIADNE 3" [Arabidopsis | 0.981 | 0.873 | 0.601 | 2.5e-161 | |
| UNIPROTKB|A2VEA3 | 555 | ARIH1 "E3 ubiquitin-protein li | 0.859 | 0.740 | 0.335 | 4.2e-65 | |
| UNIPROTKB|Q9Y4X5 | 557 | ARIH1 "E3 ubiquitin-protein li | 0.859 | 0.737 | 0.335 | 4.2e-65 | |
| UNIPROTKB|F1PG97 | 554 | ARIH1 "Uncharacterized protein | 0.857 | 0.740 | 0.335 | 1.8e-64 | |
| FB|FBgn0017418 | 503 | ari-1 "ariadne" [Drosophila me | 0.878 | 0.834 | 0.323 | 3.7e-64 | |
| UNIPROTKB|B1H1E4 | 529 | arih1 "E3 ubiquitin-protein li | 0.859 | 0.776 | 0.335 | 2e-63 | |
| MGI|MGI:1344363 | 555 | Arih1 "ariadne ubiquitin-conju | 0.859 | 0.740 | 0.335 | 4.2e-63 | |
| UNIPROTKB|Q32NS4 | 529 | arih1 "E3 ubiquitin-protein li | 0.859 | 0.776 | 0.337 | 5.4e-63 |
| TAIR|locus:2052920 ARI2 "ARIADNE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1970 (698.5 bits), Expect = 1.3e-203, P = 1.3e-203
Identities = 361/483 (74%), Positives = 419/483 (86%)
Query: 1 MEDSFSGDE-DYYYS-DRDSLDGLENDEADLQWVPPKGSSTKVITRESLLAAQKEDLRRV 58
M+D+ SG+E DYYYS D++SL+G++NDE+ V + ++ KVIT+ESLLAAQ+EDLRRV
Sbjct: 1 MDDNLSGEEEDYYYSSDQESLNGIDNDESVSIPVSSRSNTVKVITKESLLAAQREDLRRV 60
Query: 59 MELLSLREHHARTLLIHYRWDVEKLLAVLVENGKESLFNEAGVTVIDD--ADPMLPLSST 116
MELLS++EHHARTLLIHYRWDVEKL AVLVE GK+SLF+ AGVT++++ D + SS+
Sbjct: 61 MELLSVKEHHARTLLIHYRWDVEKLFAVLVEKGKDSLFSGAGVTLLENQSCDSSVSGSSS 120
Query: 117 VM-CDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175
+M CDIC+E+V G + T+MDCGH FCN+CWT HF VKINEGQSKRI CMAHKCNAICDE
Sbjct: 121 MMSCDICVEDVPGYQLTRMDCGHSFCNNCWTGHFTVKINEGQSKRIICMAHKCNAICDED 180
Query: 176 VVRNLVSKKHPNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRXXXXXXXXXXXACG 235
VVR LVSK P+LAEKF+RFLLES+IEDNKMVKWCPSTPHCGNAIR +CG
Sbjct: 181 VVRALVSKSQPDLAEKFDRFLLESYIEDNKMVKWCPSTPHCGNAIRVEDDELCEVECSCG 240
Query: 236 AQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLV 295
QFCFSC S+AHSPCSC MW+LW KKC DESETVNWITVHTKPCPKCHKPVEKNGGCNLV
Sbjct: 241 LQFCFSCSSQAHSPCSCVMWELWRKKCFDESETVNWITVHTKPCPKCHKPVEKNGGCNLV 300
Query: 296 SCICGQAFCWLCGGATGRDHTWSRIAGHSCGRYKEDKAKKTERAKRELYRYMHYHNRYKA 355
+C+C Q+FCWLCG ATGRDHTW+RI+GHSCGR++EDK K+ ERAKR+L RYMHYHNRYKA
Sbjct: 301 TCLCRQSFCWLCGEATGRDHTWARISGHSCGRFQEDKEKQMERAKRDLKRYMHYHNRYKA 360
Query: 356 HTDSFKLESKLKETVLEKVSISEERESRLRDFSWVTNGLYRLFRSRRVLSYSYPFAFYMF 415
H DS KLE+KL + +KVSISE+RE +L+DFSW TNGL+RLFRSRRVLSYSYPFAFYMF
Sbjct: 361 HIDSSKLEAKLSNNISKKVSISEKRELQLKDFSWATNGLHRLFRSRRVLSYSYPFAFYMF 420
Query: 416 GEELFKDEMTDEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYPDDKVMEIRMQVIN 475
G+ELFKDEM+ EEREIKQ+LFEDQQQQLEANVEKLSKFLEEPFDQ+ DDKVM+IR+QVIN
Sbjct: 421 GDELFKDEMSSEEREIKQNLFEDQQQQLEANVEKLSKFLEEPFDQFADDKVMQIRIQVIN 480
Query: 476 LSV 478
LSV
Sbjct: 481 LSV 483
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| TAIR|locus:2116184 ARI1 "ARIADNE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2089104 ARI3 "ARIADNE 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A2VEA3 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y4X5 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PG97 ARIH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| FB|FBgn0017418 ari-1 "ariadne" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B1H1E4 arih1 "E3 ubiquitin-protein ligase arih1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
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| MGI|MGI:1344363 Arih1 "ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q32NS4 arih1 "E3 ubiquitin-protein ligase arih1" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84RR2 | ARI2_ARATH | 6, ., 3, ., 2, ., - | 0.7598 | 1.0 | 0.8060 | no | no |
| Q6T486 | RBRA_DICDI | 6, ., 3, ., 2, ., - | 0.3272 | 0.9330 | 0.8576 | yes | no |
| Q949V6 | ARI1_ARATH | 6, ., 3, ., 2, ., - | 0.7427 | 1.0 | 0.8006 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00036439001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (589 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 478 | |||
| smart00647 | 64 | smart00647, IBR, In Between Ring fingers | 4e-16 | |
| pfam01485 | 63 | pfam01485, IBR, IBR domain | 8e-14 | |
| pfam13923 | 45 | pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI | 7e-04 | |
| pfam13639 | 46 | pfam13639, zf-RING_2, Ring finger domain | 0.002 |
| >gnl|CDD|214763 smart00647, IBR, In Between Ring fingers | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-16
Identities = 34/65 (52%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 190 EKFERFLLESFIEDNKMVKWCPSTPHCGNAIRV-EEVEVCEVEC-ACGAQFCFSCLSEAH 247
EK+ER LLES++E N +KWCP+ P C AI V EE V C CG FCF C H
Sbjct: 1 EKYERLLLESYVESNPDLKWCPA-PDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59
Query: 248 SPCSC 252
SP SC
Sbjct: 60 SPVSC 64
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the domains occurs between pairs og RING fingers. Length = 64 |
| >gnl|CDD|216524 pfam01485, IBR, IBR domain | Back alignment and domain information |
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| >gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
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| >gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| KOG1815 | 444 | consensus Predicted E3 ubiquitin ligase [Posttrans | 100.0 | |
| KOG1812 | 384 | consensus Predicted E3 ubiquitin ligase [Posttrans | 100.0 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 100.0 | |
| KOG0006 | 446 | consensus E3 ubiquitin-protein ligase (Parkin prot | 99.93 | |
| smart00647 | 64 | IBR In Between Ring fingers. the domains occurs be | 99.3 | |
| PF01485 | 64 | IBR: IBR domain; InterPro: IPR002867 Zinc finger ( | 99.16 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 98.6 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.26 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.25 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.25 | |
| smart00647 | 64 | IBR In Between Ring fingers. the domains occurs be | 98.22 | |
| PF01485 | 64 | IBR: IBR domain; InterPro: IPR002867 Zinc finger ( | 98.18 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.11 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 98.07 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.07 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 97.93 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 97.9 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 97.89 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 97.65 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.63 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 97.63 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 97.59 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.57 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 97.49 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 97.39 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 97.34 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.31 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 97.19 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 97.18 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 96.89 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 96.87 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 96.81 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 96.64 | |
| PF14555 | 43 | UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A | 96.49 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 96.46 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 96.39 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.27 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 96.08 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 96.08 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 95.98 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 95.76 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 95.35 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.95 | |
| KOG1812 | 384 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.82 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.79 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 94.79 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.66 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.45 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 94.16 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 94.08 | |
| PF10571 | 26 | UPF0547: Uncharacterised protein family UPF0547; I | 94.04 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 93.42 | |
| PRK00420 | 112 | hypothetical protein; Validated | 93.4 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 93.19 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.12 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 93.07 | |
| KOG4185 | 296 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.74 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 92.46 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.0 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.95 | |
| KOG0006 | 446 | consensus E3 ubiquitin-protein ligase (Parkin prot | 91.58 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 91.18 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 90.96 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 90.23 | |
| COG5220 | 314 | TFB3 Cdk activating kinase (CAK)/RNA polymerase II | 89.92 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 89.57 | |
| PF05883 | 134 | Baculo_RING: Baculovirus U-box/Ring-like domain; I | 89.48 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 89.46 | |
| smart00661 | 52 | RPOL9 RNA polymerase subunit 9. | 89.2 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.16 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 89.04 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.65 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 88.53 | |
| PHA00626 | 59 | hypothetical protein | 88.49 | |
| PF13240 | 23 | zinc_ribbon_2: zinc-ribbon domain | 87.75 | |
| KOG4265 | 349 | consensus Predicted E3 ubiquitin ligase [Posttrans | 87.53 | |
| KOG4739 | 233 | consensus Uncharacterized protein involved in syna | 86.75 | |
| KOG1815 | 444 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.31 | |
| PF14952 | 44 | zf-tcix: Putative treble-clef, zinc-finger, Zn-bin | 86.06 | |
| PF00627 | 37 | UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma | 85.91 | |
| PRK00432 | 50 | 30S ribosomal protein S27ae; Validated | 85.62 | |
| PLN03086 | 567 | PRLI-interacting factor K; Provisional | 85.54 | |
| PRK14559 | 645 | putative protein serine/threonine phosphatase; Pro | 85.46 | |
| COG4647 | 165 | AcxC Acetone carboxylase, gamma subunit [Secondary | 84.56 | |
| PF13248 | 26 | zf-ribbon_3: zinc-ribbon domain | 84.11 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.51 | |
| PF09297 | 32 | zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do | 81.84 | |
| KOG4445 | 368 | consensus Uncharacterized conserved protein, conta | 81.33 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 81.19 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 80.89 | |
| PF02845 | 42 | CUE: CUE domain; InterPro: IPR003892 This domain m | 80.82 | |
| PF13719 | 37 | zinc_ribbon_5: zinc-ribbon domain | 80.73 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 80.6 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 80.57 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 80.45 | |
| PF13717 | 36 | zinc_ribbon_4: zinc-ribbon domain | 80.42 |
| >KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-67 Score=543.46 Aligned_cols=410 Identities=41% Similarity=0.797 Sum_probs=361.7
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhcCchhhhhhcCCCccCCCCCCCCccccccc
Q 011726 40 KVITRESLLAAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVENGKESLFNEAGVTVIDDADPMLPLSSTVMC 119 (478)
Q Consensus 40 ~vl~~~~i~~~~~~~i~~v~~~l~i~~~~a~~lL~~~~W~~e~l~e~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~C 119 (478)
.|||++++...|.++|..|+++|+++..+|++||.+|.|+.+++++.|++ +.+.++..+|+.... .......|
T Consensus 1 ~vl~~~~~~~~~~~~i~~~~~~ls~~~~~~~~ll~~~~W~~~kl~~~~~~-~~~~~~~~~g~~~~~------~~~~~~~c 73 (444)
T KOG1815|consen 1 EVLTPDDIAALMREDIIEVSDILSLSHAVARILLAHFCWNVEKLLEEWVE-DEETGCFFVGLLLWP------KKKGDVQC 73 (444)
T ss_pred CCCchHhhhHHhHhhHHHHHHhhcCCHHHHHHHHHhcCcchHHHHHHHHh-cCcchhhhccccccC------CCCccccC
Confidence 37899999999999999999999999999999999999999999999996 567788888876543 22356899
Q ss_pred cccccccccCCceecCCCCccchhhHHHHHHHHHhcCCcccccCCCcccCCccCHHHHHHHhcCCCc-hHHHHHHHHHHH
Q 011726 120 DICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHP-NLAEKFERFLLE 198 (478)
Q Consensus 120 ~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~-e~~~~y~~~~~~ 198 (478)
.||++.++. .+..+.|||.||..||..|+..+|.+|....|+||..+|...+....|..+++ + +...+|.+++++
T Consensus 74 ~ic~~~~~~-~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s---~~~~~~ky~~~i~~ 149 (444)
T KOG1815|consen 74 GICVESYDG-EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVS---DKEDKEKYQRYILR 149 (444)
T ss_pred CcccCCCcc-hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecC---CHHHHHHHHHHHHH
Confidence 999999865 67788999999999999999999998875459999999999999999999998 5 589999999999
Q ss_pred HHHhhCCCcccCCCCCCCCceEEeccccceeeEecCCccccccccCCCCCCCCcchhHHHHHHhhhhHHHHHHHHhCCcC
Q 011726 199 SFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKP 278 (478)
Q Consensus 199 ~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~ 278 (478)
+||+.+..++|||+ |+|++++.........|.|.||+.|||.|+.+||.|.+|..+..|.++..+++++.+||..|+++
T Consensus 150 syve~~~~lkwCP~-~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~ 228 (444)
T KOG1815|consen 150 SYVEDNVPLKWCPA-PGCGLAVKFGSLESVEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKE 228 (444)
T ss_pred HHHhcCCccccCCC-CCCCceeeccCCCccceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCcc
Confidence 99999999999995 99999999755555679999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCceEec---cccceeccccccccCCCCccccCCCcCCCCchhhhhH-HHHHHHHHhhHHHHHHHHh
Q 011726 279 CPKCHKPVEKNGGCNLVSCI---CGQAFCWLCGGATGRDHTWSRIAGHSCGRYKEDKAKK-TERAKRELYRYMHYHNRYK 354 (478)
Q Consensus 279 CP~C~~~IeK~~GCnhm~C~---C~~~FCw~C~~~~~~~H~~~~~~~~~C~~~~~~~~~~-~~~~~~~l~ry~~y~~r~~ 354 (478)
||+|.++|||++|||||+|. |+++|||+|++.|. +|+.++ ++.||+|....... +..++..+.||.|||.||+
T Consensus 229 CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~-~h~~~~--~~~c~~~~~~~~~~~~~~a~~~l~r~~~~~~~~~ 305 (444)
T KOG1815|consen 229 CPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLS-DHGSST--GYSCNRYVDGKSKSARSKARRSLKRYTHYYNRWM 305 (444)
T ss_pred CCCcccchhccCCccccccccCCcCCeeceeeecccc-cccccc--eeeeeeeechhhhhHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999993 99999999999985 454433 79999998877655 7788889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHh-hhhhccccchhHHHHHHHHHHHhhhhhhccceeeeeccCccccccccChHHHHHH
Q 011726 355 AHTDSFKLESKLKETVLEK-VSIS-EERESRLRDFSWVTNGLYRLFRSRRVLSYSYPFAFYMFGEELFKDEMTDEEREIK 432 (478)
Q Consensus 355 ~h~~s~~~~~~l~~~i~~k-~~~~-~~~~~~~~~~~~l~~a~~~l~~~r~~L~~sy~~~yy~~~~~~~~~~~~~~~~~~~ 432 (478)
+|..+++++..+...+... ...+ ......+.+++|+.+|+.+|+++|++|+|||+|+||+..+ .+
T Consensus 306 ~~q~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~r~~l~~s~~~~~~~~~~-------------~~ 372 (444)
T KOG1815|consen 306 EHQVSLKLEGKLLSKVEEVKKPKLSDSLSLSWIDVQFLRDAGDVLVECRRTLKWTYAYAYYLSEN-------------NK 372 (444)
T ss_pred hhhhhhhhhhhhHHHHHHHhhhhhhcccCeeeeeeeeechhHHHHHhhhhhhhhhhhhhhhhccc-------------ch
Confidence 9999999998766665433 2222 2223457799999999999999999999999999999832 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCchHHHHHHHHHhhcc
Q 011726 433 QHLFEDQQQQLEANVEKLSKFLEEPFDQYPDDKVMEIRMQVINLS 477 (478)
Q Consensus 433 ~~~fe~~q~~le~~~e~L~~~le~~~~~~~~~~~~~~k~~~~~l~ 477 (478)
+++||++|.+|+..+|.|+..++.++.+.+.+++..+|+++.++|
T Consensus 373 ~~~fe~~q~~~~~~~e~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (444)
T KOG1815|consen 373 RNLFEDNQTDLESAVEPLSSCLEESLKDISSETLAEFKQKLTDLT 417 (444)
T ss_pred hhhhHHHHHHHhhhhhhhHHHhccccccCCcccHHHHHhhccccc
Confidence 589999999999999999999999888777888999999998886
|
|
| >KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00647 IBR In Between Ring fingers | Back alignment and domain information |
|---|
| >PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00647 IBR In Between Ring fingers | Back alignment and domain information |
|---|
| >PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines | Back alignment and domain information |
|---|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK00420 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
| >PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length | Back alignment and domain information |
|---|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00661 RPOL9 RNA polymerase subunit 9 | Back alignment and domain information |
|---|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >PHA00626 hypothetical protein | Back alignment and domain information |
|---|
| >PF13240 zinc_ribbon_2: zinc-ribbon domain | Back alignment and domain information |
|---|
| >KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding | Back alignment and domain information |
|---|
| >PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] | Back alignment and domain information |
|---|
| >PRK00432 30S ribosomal protein S27ae; Validated | Back alignment and domain information |
|---|
| >PLN03086 PRLI-interacting factor K; Provisional | Back alignment and domain information |
|---|
| >PRK14559 putative protein serine/threonine phosphatase; Provisional | Back alignment and domain information |
|---|
| >COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
| >PF13248 zf-ribbon_3: zinc-ribbon domain | Back alignment and domain information |
|---|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains | Back alignment and domain information |
|---|
| >KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) | Back alignment and domain information |
|---|
| >PF13719 zinc_ribbon_5: zinc-ribbon domain | Back alignment and domain information |
|---|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13717 zinc_ribbon_4: zinc-ribbon domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 478 | ||||
| 1wd2_A | 60 | Solution Structure Of The C-Terminal Ring From A Ri | 9e-06 |
| >pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr- Ring (Triad) Motif Length = 60 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 7e-21
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCN--A 170
S + C +C+ E ++ T + C FC C ++ + I EG I C C
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62
Query: 171 ICDEAVVRNLVSKKHPNLAEKFERFLLESFIEDN 204
E + +V+ + +++++ E +
Sbjct: 63 HLQENEIECMVA---AEIMQRYKKLQFERSGPSS 93
|
| >1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 60 | Back alignment and structure |
|---|
| >2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Length = 86 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| 1wd2_A | 60 | Ariadne-1 protein homolog; ring, IBR, triad, zinc | 99.8 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 99.66 | |
| 2ct7_A | 86 | Ring finger protein 31; IBR, structural genomics, | 99.31 | |
| 2jmo_A | 80 | Parkin; IBR, E3 ligase, zinc binding domain, RBR; | 99.06 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 99.0 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 98.69 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 98.52 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 98.45 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 98.42 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 98.39 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 98.39 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.39 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 98.39 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 98.39 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 98.38 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 98.35 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 98.34 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 98.32 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.31 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 98.31 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 98.28 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 98.28 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 98.26 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 98.26 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 98.23 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 98.23 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 98.22 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 98.21 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 98.21 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.21 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 98.2 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 98.2 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.19 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 98.17 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 98.16 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 98.15 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.15 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 98.13 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 98.06 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.04 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 98.03 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.03 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.01 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 98.0 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 98.0 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 97.97 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 97.97 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 97.91 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 97.9 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 97.9 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 97.89 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 97.89 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 97.84 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 97.8 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.79 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 97.69 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 97.68 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 97.59 | |
| 2ct7_A | 86 | Ring finger protein 31; IBR, structural genomics, | 97.55 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 97.46 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 97.41 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 97.36 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 97.34 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 97.29 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 97.27 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 97.23 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 97.22 | |
| 2jmo_A | 80 | Parkin; IBR, E3 ligase, zinc binding domain, RBR; | 97.2 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 97.12 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 96.63 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 96.59 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 96.47 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 95.74 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 95.54 | |
| 1v92_A | 46 | NSFL1 cofactor P47; 3-helix bundle, recombination; | 94.86 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 93.92 | |
| 2cs3_A | 93 | Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s | 93.72 | |
| 2dal_A | 62 | Protein KIAA0794; FAS associted factor 1, UBA-like | 93.37 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 92.72 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 92.63 | |
| 1wd2_A | 60 | Ariadne-1 protein homolog; ring, IBR, triad, zinc | 92.35 | |
| 1wj7_A | 104 | Hypothetical protein (RSGI RUH-015); UBA domain, u | 92.15 | |
| 2dam_A | 67 | ETEA protein; KIAA0887, UBA-like domain, structura | 91.13 | |
| 2di0_A | 71 | Activating signal cointegrator 1 complex subunit 2 | 90.92 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 89.51 | |
| 1z96_A | 40 | DNA-damage, UBA-domain protein MUD1; ubiquitin, th | 89.25 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 88.97 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 88.16 | |
| 2dzl_A | 66 | Protein FAM100B; UBA-like domain, structural genom | 87.25 | |
| 3e21_A | 45 | HFAF1, FAS-associated factor 1; UBA, alternative s | 86.46 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 85.85 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 85.14 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 84.88 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 84.37 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 84.24 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 83.89 | |
| 1ify_A | 49 | HHR23A, UV excision repair protein RAD23 homolog A | 83.74 | |
| 2k4x_A | 55 | 30S ribosomal protein S27AE; metal-binding, ribonu | 83.73 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 82.7 | |
| 2jrp_A | 81 | Putative cytoplasmic protein; two-zinc binding pro | 82.65 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 82.39 | |
| 1pft_A | 50 | TFIIB, PFTFIIBN; N-terminal domain, transcription | 81.05 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 80.53 | |
| 1wfh_A | 64 | Zinc finger (AN1-like) family protein; ZF-AN1 doma | 80.29 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 80.28 |
| >1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-21 Score=139.56 Aligned_cols=56 Identities=50% Similarity=1.156 Sum_probs=48.9
Q ss_pred HHHhCCcCCCCCCCCccccCCCCceEec---cccceeccccccccCCCCccccCCCcCCCCch
Q 011726 271 WITVHTKPCPKCHKPVEKNGGCNLVSCI---CGQAFCWLCGGATGRDHTWSRIAGHSCGRYKE 330 (478)
Q Consensus 271 ~i~~~~k~CP~C~~~IeK~~GCnhm~C~---C~~~FCw~C~~~~~~~H~~~~~~~~~C~~~~~ 330 (478)
||.+++|+||+|+++|||++|||||+|+ |+++|||+|+++|.. |+ ...|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~-~~---~~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP-HG---SAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG-GG---TSSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc-CC---CccccCCCccc
Confidence 6788999999999999999999999995 999999999999863 32 23589999975
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 | Back alignment and structure |
|---|
| >2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 | Back alignment and structure |
|---|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
| >2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 | Back alignment and structure |
|---|
| >2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
| >1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4 | Back alignment and structure |
|---|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
| >2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 | Back alignment and structure |
|---|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 478 | ||||
| d1wd2a_ | 60 | g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Ho | 2e-16 | |
| d1wima_ | 94 | g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016 | 3e-16 | |
| d2ct7a1 | 73 | g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H | 6e-10 | |
| d2ct7a1 | 73 | g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H | 7e-10 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 0.002 |
| >d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Ariadne-1 protein homolog species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (175), Expect = 2e-16
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 271 WITVHTKPCPKCHKPVEKNGGCNLVSCI---CGQAFCWLCGGATGRDHTWSRIAGHSCGR 327
WI +TK CPKCH +EK+GGCN + C C FCW+C G + A ++C R
Sbjct: 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS----AWYNCNR 56
Query: 328 YKE 330
Y E
Sbjct: 57 YNE 59
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
| >d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
| >d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| d1wd2a_ | 60 | Ariadne-1 protein homolog {Human (Homo sapiens) [T | 99.81 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 99.62 | |
| d2ct7a1 | 73 | Ring finger protein 31 {Human (Homo sapiens) [TaxI | 99.15 | |
| d2ct7a1 | 73 | Ring finger protein 31 {Human (Homo sapiens) [TaxI | 99.14 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 98.46 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.43 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.4 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.26 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.14 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 98.14 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.04 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.0 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 97.97 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 97.93 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 97.93 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 97.13 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 96.95 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 96.9 | |
| d1v92a_ | 46 | NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { | 95.93 | |
| d2cs3a1 | 80 | Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [ | 93.5 | |
| d1wd2a_ | 60 | Ariadne-1 protein homolog {Human (Homo sapiens) [T | 92.11 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 91.94 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 90.18 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 89.32 | |
| d2csva1 | 59 | Tripartite motif-containing protein 29 {Human (Hom | 88.44 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 86.82 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 86.76 | |
| d1wffa_ | 85 | ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus | 86.41 | |
| d2k4xa1 | 55 | Ribosomal protein S27ae {Thermoplasma acidophilum | 86.22 | |
| d1wfha_ | 64 | Zinc finger A20 and AN1 domains containing protein | 85.9 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 84.95 | |
| d1wfla_ | 74 | Zinc finger A20 domain containing protein 2 {Mouse | 83.27 | |
| d1frea_ | 39 | Nuclear factor XNF7 {African clawed frog (Xenopus | 81.54 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 81.47 | |
| d1wfpa_ | 74 | Zinc finger A20 and AN1 domains containing protein | 81.16 | |
| d2di0a1 | 63 | Activating signal cointegrator 1 complex subunit 2 | 80.99 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 80.34 |
| >d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Ariadne-1 protein homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.4e-21 Score=141.38 Aligned_cols=56 Identities=50% Similarity=1.156 Sum_probs=49.1
Q ss_pred HHHhCCcCCCCCCCCccccCCCCceEec---cccceeccccccccCCCCccccCCCcCCCCch
Q 011726 271 WITVHTKPCPKCHKPVEKNGGCNLVSCI---CGQAFCWLCGGATGRDHTWSRIAGHSCGRYKE 330 (478)
Q Consensus 271 ~i~~~~k~CP~C~~~IeK~~GCnhm~C~---C~~~FCw~C~~~~~~~H~~~~~~~~~C~~~~~ 330 (478)
||..|||+||+|+++|||++|||||+|+ ||++|||+|+++|.. |+ ..+++|++|++
T Consensus 1 wi~~ntK~CP~C~~~ieK~~GCnhM~C~~~~C~~~fCw~C~~~~~~-~~---~~~~~C~~~~e 59 (60)
T d1wd2a_ 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP-HG---SAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG-GG---TSSSSSCSCCC
T ss_pred CchhcCcCCCCCCCeEEECCCCCCeEeCCCCCCCeEECCCCCcccc-CC---CCCCCCcCCcc
Confidence 7889999999999999999999999995 999999999999864 31 24589999975
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
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| >d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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