Citrus Sinensis ID: 011770
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | 2.2.26 [Sep-21-2011] | |||||||
| Q4R7R1 | 393 | Short-chain dehydrogenase | N/A | no | 0.686 | 0.834 | 0.486 | 8e-79 | |
| Q8WUS8 | 393 | Short-chain dehydrogenase | yes | no | 0.686 | 0.834 | 0.481 | 2e-77 | |
| Q9D665 | 394 | Short-chain dehydrogenase | yes | no | 0.686 | 0.832 | 0.479 | 9e-77 | |
| A8DZE7 | 387 | Short-chain dehydrogenase | yes | no | 0.686 | 0.847 | 0.448 | 4e-75 | |
| Q32L94 | 393 | Short-chain dehydrogenase | yes | no | 0.682 | 0.829 | 0.469 | 7e-75 | |
| Q0IH73 | 386 | Short-chain dehydrogenase | N/A | no | 0.713 | 0.883 | 0.421 | 1e-72 | |
| A6NKP2 | 422 | Putative short-chain dehy | no | no | 0.679 | 0.770 | 0.416 | 2e-63 | |
| Q9FX01 | 439 | 3beta-hydroxysteroid-dehy | no | no | 0.736 | 0.801 | 0.328 | 7e-46 | |
| Q67ZE1 | 564 | 3beta-hydroxysteroid-dehy | no | no | 0.725 | 0.615 | 0.333 | 2e-43 | |
| O53454 | 370 | 3 beta-hydroxysteroid deh | yes | no | 0.677 | 0.875 | 0.328 | 3e-41 |
| >sp|Q4R7R1|D42E1_MACFA Short-chain dehydrogenase/reductase family 42E member 1 OS=Macaca fascicularis GN=SDR42E1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 294 bits (753), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 168/345 (48%), Positives = 221/345 (64%), Gaps = 17/345 (4%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
+ +T L+TGG G+ G L L ++G + V FD+ +SP I G+ IQGD+
Sbjct: 7 QKETVLITGGGGYFGFRLGCALNQKGVH-VILFDI--SSPAE--TIPEGIKFIQGDICHL 61
Query: 70 IDVEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
D+EKA + D CVFH+ASYGMSG+E L ++EVNI GT ++++AC + RLVY
Sbjct: 62 SDIEKAFQDADITCVFHIASYGMSGREQLNRNLIEEVNIGGTDNILQACQRRRVPRLVYT 121
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYT 187
ST+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AE+ VL++NG P + + L T
Sbjct: 122 STFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLEANGTPLDRGD-GVLRT 180
Query: 188 CAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLL 247
CA+RPA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILAS L
Sbjct: 181 CALRPAGIYGPGEQRHLPRIVSYIEKGLFKFVYGDPRSLVEFVHVDNLVQAHILASEALR 240
Query: 248 DDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFS 307
D KG IASGQPYF+SDG P+N FEF PL++ L Y P + L L L F+
Sbjct: 241 AD----KGH-IASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPSTRL----PLTLVYCFA 291
Query: 308 FFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY 352
F +++ L R + QP + EVYK GVTHYFSL KAK EL Y
Sbjct: 292 FLTEMVHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGY 336
|
Macaca fascicularis (taxid: 9541) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8WUS8|D42E1_HUMAN Short-chain dehydrogenase/reductase family 42E member 1 OS=Homo sapiens GN=SDR42E1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/345 (48%), Positives = 217/345 (62%), Gaps = 17/345 (4%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
+ ++ L+TGG G+ G L L + G + V FD+ +SP I G+ IQGD+
Sbjct: 7 QKESVLITGGSGYFGFRLGCALNQNGVH-VILFDI--SSPAQ--TIPEGIKFIQGDIRHL 61
Query: 70 IDVEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
DVEKA + D CVFH+ASYGMSG+E L + EVN+ GT ++++ C + RLVY
Sbjct: 62 SDVEKAFQDADVTCVFHIASYGMSGREQLNRNLIKEVNVRGTDNILQVCQRRRVPRLVYT 121
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYT 187
ST+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AEQ VL++N P + + L T
Sbjct: 122 STFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEQKVLEANATPLDRGD-GVLRT 180
Query: 188 CAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLL 247
CA+RPA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILAS L
Sbjct: 181 CALRPAGIYGPGEQRHLPRIVSYIEKGLFKFVYGDPRSLVEFVHVDNLVQAHILASEALR 240
Query: 248 DDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFS 307
D KG IASGQPYF+SDG P+N FEF PL++ L Y P + L L L F+
Sbjct: 241 AD----KGH-IASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPSTRL----PLTLVYCFA 291
Query: 308 FFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY 352
F +++ L R + QP + EVYK GVTHYFSL KAK EL Y
Sbjct: 292 FLTEMVHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGY 336
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9D665|D42E1_MOUSE Short-chain dehydrogenase/reductase family 42E member 1 OS=Mus musculus GN=Sdr42e1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 166/346 (47%), Positives = 219/346 (63%), Gaps = 18/346 (5%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T L+TGG G+ G L L ++GA +V FD+ P +L G+ + GD+ D
Sbjct: 9 ETVLITGGGGYFGFRLGCALNQKGA-RVILFDI--TQPAQNL--PEGIKFVCGDIRCLAD 63
Query: 72 VEKA---ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
VE A A V CVFHVASYGMSG+E L +++EVN+ GT +++ ACLE G+ RLVY S
Sbjct: 64 VETAFQDAEKVACVFHVASYGMSGREQLNKTQIEEVNVGGTENILRACLERGVPRLVYTS 123
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTC 188
T+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AE+ VL++NG FK+ + L TC
Sbjct: 124 TFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLEANGLAFKQGD-GILRTC 182
Query: 189 AVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLD 248
A+RPA IYG GE+RHLPRIVS + GL F G+P ++++VDNL A ILAS L
Sbjct: 183 AIRPAGIYGAGEQRHLPRIVSYIERGLFRFVYGDPQSLVEFVHVDNLAKAHILASEALKA 242
Query: 249 DIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSF 308
D KG +ASGQPYF+SDG P+N FEF PL++ L Y P + L L L +F
Sbjct: 243 D----KGH-VASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPSTRL----PLTLIYCLAF 293
Query: 309 FYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVP 354
+ + + R + QP + EVYK GVTHYFSL KAK EL + P
Sbjct: 294 LVEMTHFIVGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGFEP 339
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Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A8DZE7|D42E1_DANRE Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 215/343 (62%), Gaps = 15/343 (4%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+FL+TGG G+ G L L++ + +V FD+ + P L G+ ++ D+
Sbjct: 8 NSFLITGGGGYFGFRLACALLKTSS-KVVLFDV--SPPIQDL--PEGLIFMRADIRDYAQ 62
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
VEKA RG CVFH+ASYGMSG+E L ++EVN+ GT +++ AC+ + RL+Y ST+N
Sbjct: 63 VEKAVRGSHCVFHIASYGMSGREQLNRKLIEEVNVKGTENILRACVAHSVPRLIYTSTFN 122
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVR 191
VVFGG+EI NG+ESLPY P+ H D Y R+KS+AE VLK+N N+ L TCA+R
Sbjct: 123 VVFGGQEIKNGDESLPYLPLHLHPDHYSRTKSIAEMQVLKANNLAL-SNSTGVLRTCALR 181
Query: 192 PAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251
PA IYGPGE+RHLPRIVS + G+ F G+P ++++VDNLV A +LA+ D
Sbjct: 182 PAGIYGPGEQRHLPRIVSYIENGIFRFVYGDPDSLVEFVHVDNLVSAHLLAA-----DAL 236
Query: 252 GQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYS 311
+K + A+GQ YF+SDG P+N FEF PL++ L Y P L + F F+F
Sbjct: 237 TEKQQCRAAGQAYFISDGRPVNNFEFFRPLVEGLGYSFPTLRLPISMIYF----FAFLTE 292
Query: 312 VLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVP 354
+++ + R + QPL+ EVYK GVTHYFS+ KA++EL Y P
Sbjct: 293 MVHFVVGRIYNFQPLLTRTEVYKTGVTHYFSMRKAREELGYEP 335
|
Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q32L94|D42E1_BOVIN Short-chain dehydrogenase/reductase family 42E member 1 OS=Bos taurus GN=SDR42E1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 281 bits (719), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 161/343 (46%), Positives = 213/343 (62%), Gaps = 17/343 (4%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T L+TGG G+ G L L G + V FD+ + I G+ I GD+ D
Sbjct: 9 ETVLITGGGGYFGFRLGCALNLLGVH-VILFDISHPAQ----TIPEGIRFILGDIRCLSD 63
Query: 72 VEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
+E A +GVD CVFH+ASYGMSG+E L ++E+N+ GT ++++AC G+ RLVY ST
Sbjct: 64 IENAFQGVDVACVFHIASYGMSGREQLNRSLIEEINVGGTDNILQACRRRGVPRLVYTST 123
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AE+ VL +NG ++ L TCA
Sbjct: 124 FNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLSANGTALERGG-GVLSTCA 182
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249
+RPA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILAS L
Sbjct: 183 LRPAGIYGPGEQRHLPRIVSYIEKGLFRFVYGDPKSLVEFVHVDNLVQAHILASEAL--- 239
Query: 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309
KG IA+GQPYF+SDG P+N FEF PL++ L Y P + L L L F+F
Sbjct: 240 -KANKGH-IAAGQPYFISDGRPVNNFEFFRPLVEGLGYKFPSTRL----PLTLIYCFAFL 293
Query: 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY 352
+ + L R + QP + EVYK GVTHYFSL KA+ EL Y
Sbjct: 294 TEMTHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKARKELGY 336
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0IH73|D42E1_XENLA Short-chain dehydrogenase/reductase family 42E member 1 OS=Xenopus laevis GN=sdr42e1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 224/377 (59%), Gaps = 36/377 (9%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T ++TGG G+ G L L +G + V FD+R P L G+H +QGDV S
Sbjct: 9 ETVVITGGGGYFGHRLGCTLHEKGVH-VILFDIR--KPDQEL--PEGIHFVQGDVRSLSQ 63
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
+E G CVFH ASYGMSGKE L +++ +N+ GT ++I+AC+ + RLVY ST+N
Sbjct: 64 LEDVVAGASCVFHTASYGMSGKEQLHRQKIEAINVRGTENIIQACINTNVPRLVYTSTFN 123
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVR 191
V+FGG+ I +G+ESLPY P D VD+Y R+K+VAE VLK N + KNN L TC++R
Sbjct: 124 VIFGGQTIRDGDESLPYLPQDAFVDNYSRTKTVAEMFVLKMNNQEL-KNNSGFLRTCSLR 182
Query: 192 PAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251
A IYGPGE+RHLPRI+S + G+ F G+ + +++VDNL+ A ILA+ L +
Sbjct: 183 AAGIYGPGEQRHLPRIISALEKGMFLFVYGDNPL-VQFVHVDNLISAHILAAEALTSE-- 239
Query: 252 GQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYS 311
+ IA+GQPYF+SDG P+N FEF PL++ L Y P L P +L +F++
Sbjct: 240 ---KKYIAAGQPYFISDGPPVNNFEFFRPLVEGLGYKFPS--LRFPLSLV------YFFA 288
Query: 312 VLYPWLNRWWLP----QPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATIS 367
L W++ + P QP++ AEV+K GVTHYF + KA EL + P+ ++
Sbjct: 289 FLTEWIHFFISPVCDFQPILTRAEVFKTGVTHYFKIEKATRELGF----EPQPFTMQDVA 344
Query: 368 YW--------QDRKRKS 376
W QD+K KS
Sbjct: 345 EWFKNHGYGKQDKKIKS 361
|
Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A6NKP2|D42E2_HUMAN Putative short-chain dehydrogenase/reductase family 42E member 2 OS=Homo sapiens GN=SDR42E2 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 199/346 (57%), Gaps = 21/346 (6%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+ LVTGG G++G +L L + G V D R W ++ IQ DV +
Sbjct: 34 QKVLVTGGGGYLGFSLGSHLAKSGT-SVILLD-RRRPQWE---LSPETKFIQADVRDEEA 88
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
+ +A GVDCVFHVASYGMSG E LQ +++ +N+ GT VI+ C+ + RL+Y ST N
Sbjct: 89 LYRAFEGVDCVFHVASYGMSGAEKLQKEQIESINVGGTKLVIDVCVRRRVPRLIYTSTVN 148
Query: 132 VVFGGKEIVNGNE-SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAV 190
V FGGK I G+E S+PYFP+DEHVD Y R+K++A+QL L +NG P L TC +
Sbjct: 149 VAFGGKPIEQGDEDSVPYFPLDEHVDHYSRTKAIADQLTLMANGMPLPGGG--TLRTCVL 206
Query: 191 RPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250
RP IYGP E+RHLPR+ K L F+ G+ + +W++V NLV A +LA+ L
Sbjct: 207 RPPGIYGPEEQRHLPRVAGHIKKRLFMFRFGDHKARMNWVHVHNLVQAHVLAAEALTT-- 264
Query: 251 PGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHA--LFLGKVFSF 308
KG +ASGQ Y+++DG +N FE++ PL + L Y P W+ VP + V
Sbjct: 265 --AKGY-VASGQAYYINDGESVNLFEWMAPLFEKLGYSQP--WIQVPTSWVYLTAAVMER 319
Query: 309 FYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVP 354
+ L P + LP PL+ +EV V VTH F + KA+ +L Y P
Sbjct: 320 LHLALRPICS---LP-PLLTRSEVRSVAVTHTFQIAKARAQLGYAP 361
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FX01|HSDD1_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 201/387 (51%), Gaps = 35/387 (9%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDL---------RTNSPWS 51
M ++E E + +VTGG G L LVR + VR DL
Sbjct: 3 MEVTETE----RWCVVTGGRGFAARHLVEMLVRYQMFHVRIADLAPAIVLNPHEETGILG 58
Query: 52 HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS-GKEMLQFGRVDEVNINGTC 110
+ + V + D+ +K V K +G + VFH+A+ S LQ+ VN+ GT
Sbjct: 59 EAIRSGRVQYVSADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYS----VNVQGTT 114
Query: 111 HVIEACLEFGIQRLVYVSTYNVVFGGKE-IVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
+VI+AC+E G++RL+Y S+ +VVF G +N +ESLPY P +H DSY +K+ E L+
Sbjct: 115 NVIDACIEVGVKRLIYTSSPSVVFDGVHGTLNADESLPYPP--KHNDSYSATKAEGEALI 172
Query: 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229
LK+NGR L TC +RP++I+GPG++ +P +V+ A+ G F IG+ S D+
Sbjct: 173 LKANGR-------SGLLTCCIRPSSIFGPGDKLMVPSLVTAARAGKSKFIIGDGSNFYDF 225
Query: 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDL 289
YV+N+V A + A L G + A+GQ YF+++ PI +EF+ LL+ L Y+
Sbjct: 226 TYVENVVHAHVCAERALAS---GGEVCAKAAGQAYFITNMEPIKFWEFMSQLLEGLGYER 282
Query: 290 PKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDE 349
P + +P +L + ++ + Y L + + P++ P+ V + F KAKD
Sbjct: 283 PS--IKIPASLMMP--IAYLVELAYKLLGPYGMKVPVLTPSRVRLLSCNRTFDSSKAKDR 338
Query: 350 LCYVPIVSPREGMAATISYWQDRKRKS 376
L Y P+V +EG+ TI + K ++
Sbjct: 339 LGYSPVVPLQEGIKRTIDSFSHLKAQN 365
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 195/381 (51%), Gaps = 34/381 (8%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDL---------RTNSPWSHLLINHGVHCIQGD 65
+VTGG G L LVR + VR DL N L + V I D
Sbjct: 13 VVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLRSGRVQYISAD 72
Query: 66 VVSKIDVEKAARGVDCVFHVASYGMS-GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
+ K V KA +G + VFH+A+ S LQ+ VN+ GT +VI+AC++ G++RL
Sbjct: 73 LRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQY----SVNVQGTQNVIDACVDVGVKRL 128
Query: 125 VYVSTYNVVFGGKE-IVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRK 183
+Y S+ +VVF G I+NG ES+ Y PI +H DSY +K+ E+L++K+NGR
Sbjct: 129 IYTSSPSVVFDGVHGILNGTESMAY-PI-KHNDSYSATKAEGEELIMKANGR-------N 179
Query: 184 CLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS 243
L TC +RP++I+GPG+ +P +V+ A+ G F IG+ + D+ YV+N+ A + A
Sbjct: 180 GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAE 239
Query: 244 MGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLG 303
L G A+GQ YF+++ PI +EF+ LL L Y+ P + +P F+
Sbjct: 240 RALAS---GGDVSTKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPS--IKIP--AFIM 292
Query: 304 KVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMA 363
+ + Y L + + P + P+ V + + F KAKD L Y P+V +EG+
Sbjct: 293 MPIAHLVELTYKVLGPYGMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIR 352
Query: 364 ATI---SYWQDRKRKSLDGPT 381
TI S+ + +GP+
Sbjct: 353 RTIDSFSHLTAGSQSKREGPS 373
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|O53454|3BHS_MYCTU 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Mycobacterium tuberculosis GN=Rv1106c PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 181/362 (50%), Gaps = 38/362 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTGG G VG+ L L+ RG + VR+FD +P S L + + +QGD+
Sbjct: 18 LVTGGAGFVGANLVTTLLDRGHW-VRSFD---RAP-SLLPAHPQLEVLQGDITDADVCAA 72
Query: 75 AARGVDCVFHVASYG--MSGKEMLQFGRVDE--VNINGTCHVIEACLEFGIQRLVYVSTY 130
A G+D +FH A+ M G + R VN+ GT +++ A G+QR VY S+
Sbjct: 73 AVDGIDTIFHTAAIIELMGGASVTDEYRQRSFAVNVGGTENLLHAGQRAGVQRFVYTSSN 132
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAV 190
+VV GG+ I G+E+LPY D D Y +K VAE+ VL NG + TCA+
Sbjct: 133 SVVMGGQNIAGGDETLPY--TDRFNDLYTETKVVAERFVLAQNG-------VDGMLTCAI 183
Query: 191 RPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250
RP+ I+G G++ ++ G V +G S + D YV NL+ ILA+ L+ D
Sbjct: 184 RPSGIWGNGDQTMFRKLFESVLKGHVKVLVGRKSARLDNSYVHNLIHGFILAAAHLVPD- 242
Query: 251 PGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFY 310
A GQ YF++D PIN FEF P+L+ PK ++ P +
Sbjct: 243 ------GTAPGQAYFINDAEPINMFEFARPVLEACGQRWPKMRISGPAVRW--------- 287
Query: 311 SVLYPWLN---RWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATIS 367
V+ W R+ P PL+ P V ++ + +YFS+ KA+ +L Y P+ + ++ + +
Sbjct: 288 -VMTGWQRLHFRFGFPAPLLEPLAVERLYLDNYFSIAKARRDLGYEPLFTTQQALTECLP 346
Query: 368 YW 369
Y+
Sbjct: 347 YY 348
|
3-beta-HSD is a bifunctional enzyme, that catalyzes the oxidation and isomerization of cholesterol, pregnenolone, and dehydroepiandrosterone (DHEA) into cholest-4-en-3-one, progesterone, and androsterone, respectively. Mycobacterium tuberculosis (taxid: 1773) EC: 5 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| 255539320 | 478 | hydroxysteroid dehydrogenase, putative [ | 1.0 | 1.0 | 0.765 | 0.0 | |
| 418729183 | 478 | 3-beta-hydroxy-delta5-steroid dehydrogen | 1.0 | 1.0 | 0.753 | 0.0 | |
| 225457644 | 478 | PREDICTED: short-chain dehydrogenase/red | 1.0 | 1.0 | 0.740 | 0.0 | |
| 297745599 | 479 | unnamed protein product [Vitis vinifera] | 0.983 | 0.981 | 0.738 | 0.0 | |
| 449455641 | 478 | PREDICTED: short-chain dehydrogenase/red | 1.0 | 1.0 | 0.711 | 0.0 | |
| 15226138 | 480 | Rossmann-fold NAD(P)-binding domain-cont | 0.997 | 0.993 | 0.721 | 0.0 | |
| 388497514 | 479 | unknown [Lotus japonicus] | 1.0 | 0.997 | 0.707 | 0.0 | |
| 297826819 | 480 | 3-beta hydroxysteroid dehydrogenase/isom | 0.995 | 0.991 | 0.725 | 0.0 | |
| 356564410 | 491 | PREDICTED: short-chain dehydrogenase/red | 1.0 | 0.973 | 0.708 | 0.0 | |
| 356553309 | 478 | PREDICTED: short-chain dehydrogenase/red | 1.0 | 1.0 | 0.702 | 0.0 |
| >gi|255539320|ref|XP_002510725.1| hydroxysteroid dehydrogenase, putative [Ricinus communis] gi|223551426|gb|EEF52912.1| hydroxysteroid dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/478 (76%), Positives = 420/478 (87%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHL+ENEGIE F VTGGLG VGSALCLEL+RRGA QVRAFD+R SPWSH L + GVH
Sbjct: 1 MHLTENEGIENNNFAVTGGLGFVGSALCLELMRRGARQVRAFDVRPTSPWSHQLTSRGVH 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
CI+GD+ K DVEKA RGVDCVFH+AS+GMSGKEM++FGRVDEVNINGTCHV+EAC+EFG
Sbjct: 61 CIRGDLTRKSDVEKALRGVDCVFHLASFGMSGKEMIRFGRVDEVNINGTCHVLEACIEFG 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I+RLVYVSTYNVVFGGK+IVNGNESLPYFP D+HVDSYG SKS+AEQLVLK NGRP KKN
Sbjct: 121 IKRLVYVSTYNVVFGGKQIVNGNESLPYFPTDDHVDSYGGSKSIAEQLVLKYNGRPLKKN 180
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
N K LYTCA+RPAAIYGPGEERH+PRIVS AKLGL+PF+IG+ +VKTDW+YVDNLVLALI
Sbjct: 181 NGKRLYTCAIRPAAIYGPGEERHMPRIVSYAKLGLMPFRIGDANVKTDWVYVDNLVLALI 240
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300
LASMGLLDDIP G P+A+GQPYF+SDG PIN+FEF+ PLLK+L+YD+PK+ L+VPHAL
Sbjct: 241 LASMGLLDDIPNSGGHPVAAGQPYFISDGSPINSFEFLQPLLKSLNYDMPKASLSVPHAL 300
Query: 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPRE 360
LGK+F Y++LYPWLNRWWLPQP ILPAEVYKVGVTHYFS LKAK+EL YVP+V+PRE
Sbjct: 301 ILGKIFGAIYTLLYPWLNRWWLPQPFILPAEVYKVGVTHYFSFLKAKEELGYVPMVTPRE 360
Query: 361 GMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFKS 420
GMAATI+YWQ++KRKSLDGPTIY WLF +IG+ LF AYLPDIGPVP+ R I LF +S
Sbjct: 361 GMAATIAYWQEKKRKSLDGPTIYIWLFAVIGMSTLFCAAYLPDIGPVPLFRAISLFFLRS 420
Query: 421 MWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRARK 478
M M R F +A +AH+ E ++AW LAK+VDPANA+GWFWQTLALG+FSLR LLKRARK
Sbjct: 421 MRMTRTVFLLASAAHIGESIYAWHLAKRVDPANARGWFWQTLALGIFSLRFLLKRARK 478
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|418729183|gb|AFX66971.1| 3-beta-hydroxy-delta5-steroid dehydrogenase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/478 (75%), Positives = 421/478 (88%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLSENEGIE K+F+VTGGLG +G+ALCLELVRRGA V+AFDLRT+SPWS L +GVH
Sbjct: 1 MHLSENEGIEKKSFVVTGGLGFIGAALCLELVRRGARLVKAFDLRTHSPWSSQLRQYGVH 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
IQGD+ K V+KA +G DCVFH+ASYGMSGKEMLQ+ RVDEVNINGTCH+I+ACL+
Sbjct: 61 LIQGDITDKQHVQKALQGSDCVFHLASYGMSGKEMLQYSRVDEVNINGTCHIIDACLDHQ 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I+RLVYVST NVV+GGKEIVNGNE+LPYFPID+HVD YGRSKS+AEQLVLKSNGRPF K
Sbjct: 121 IKRLVYVSTPNVVYGGKEIVNGNENLPYFPIDDHVDPYGRSKSIAEQLVLKSNGRPFTKK 180
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
N KCLYTCA+RPAAIYGPGEERHLPRI++L KLGL PFKIG P+VK+DW+YVDNLVLAL+
Sbjct: 181 NGKCLYTCAIRPAAIYGPGEERHLPRIITLTKLGLFPFKIGSPNVKSDWVYVDNLVLALL 240
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300
LASMGLLDDIPG++G PIA+GQPYF+SDG PIN+FEF+ PLLK+LDYDLPK+ LAV HAL
Sbjct: 241 LASMGLLDDIPGREGLPIAAGQPYFISDGSPINSFEFLLPLLKSLDYDLPKTSLAVSHAL 300
Query: 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPRE 360
LGK+F FYS LYPWLN WLPQPLILPAEVYKVGVTHYFS LKAK+EL YVP+VS +E
Sbjct: 301 LLGKIFWAFYSFLYPWLNSRWLPQPLILPAEVYKVGVTHYFSFLKAKEELGYVPMVSSKE 360
Query: 361 GMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFKS 420
GMAATI+YWQ+RKR+SLDGPTI+AWLFC+IG+ ALFA AYLPD GP+P +R + LF F+S
Sbjct: 361 GMAATIAYWQERKRRSLDGPTIWAWLFCVIGMSALFAAAYLPDYGPIPFIRAVHLFFFRS 420
Query: 421 MWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRARK 478
M +++ F +A +AHV E ++AW +AK +DPANA+GWFWQT ALG+FSLRLLLKRA+K
Sbjct: 421 MLALKVIFVLAAAAHVGEAIYAWNVAKTIDPANARGWFWQTFALGIFSLRLLLKRAKK 478
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457644|ref|XP_002275214.1| PREDICTED: short-chain dehydrogenase/reductase family 42E member 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/478 (74%), Positives = 419/478 (87%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLSENEGIEG TF+VTGGLG VG+ALCLELVRRGA Q+RA DLR+ SPWS L N GVH
Sbjct: 1 MHLSENEGIEGSTFVVTGGLGFVGAALCLELVRRGARQIRAIDLRSTSPWSDDLENKGVH 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
CIQGD+ K DVE+A RG DCVFH+ASYGMSGKEM+Q+GRVDEVNINGTCH+++AC+EFG
Sbjct: 61 CIQGDITVKKDVERALRGADCVFHLASYGMSGKEMIQYGRVDEVNINGTCHILDACIEFG 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I+RLVY STYNVVFGGKEI+NGNE+LPYFP+D+HVDSY RSKS+AEQLVLK+NGRPFK
Sbjct: 121 IKRLVYTSTYNVVFGGKEILNGNEALPYFPLDDHVDSYSRSKSIAEQLVLKNNGRPFKNK 180
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
+ KCLYTCAVRPAAIYGPGE+RH PRI+SLAKLG++PF IGE +VK DWIYVDNLV A I
Sbjct: 181 SGKCLYTCAVRPAAIYGPGEDRHFPRIISLAKLGVLPFTIGEANVKGDWIYVDNLVHAQI 240
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300
LASMGLLDDIPG++ RPIA+GQ YF++DG P+N +EF+ PLL++L+YDLPK+ L VP+AL
Sbjct: 241 LASMGLLDDIPGREKRPIAAGQSYFINDGSPVNIYEFLRPLLRSLEYDLPKASLPVPYAL 300
Query: 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPRE 360
F+ ++ Y++LYPWLNRWWLPQPL+LPAEVYKVGVTHYFS LKAK+EL YVP+VSPRE
Sbjct: 301 FMSRINCMIYTLLYPWLNRWWLPQPLMLPAEVYKVGVTHYFSYLKAKEELGYVPLVSPRE 360
Query: 361 GMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFKS 420
GMAATISYWQ+RKR+SL+GPT+ WLFC+IG+ LF AYLPDIGPVPI R I LF +S
Sbjct: 361 GMAATISYWQERKRRSLEGPTLQTWLFCIIGMFVLFCAAYLPDIGPVPIFRAISLFFLRS 420
Query: 421 MWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRARK 478
M ++R+ F +A +AH+ E V+AW LAK+VDPANA+GWFWQT ALG+FSLR LLKRA+K
Sbjct: 421 MAIIRVVFLLATAAHIGEAVYAWHLAKRVDPANARGWFWQTFALGIFSLRFLLKRAKK 478
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745599|emb|CBI40764.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/470 (73%), Positives = 412/470 (87%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLSENEGIEG TF+VTGGLG VG+ALCLELVRRGA Q+RA DLR+ SPWS L N GVH
Sbjct: 1 MHLSENEGIEGSTFVVTGGLGFVGAALCLELVRRGARQIRAIDLRSTSPWSDDLENKGVH 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
CIQGD+ K DVE+A RG DCVFH+ASYGMSGKEM+Q+GRVDEVNINGTCH+++AC+EFG
Sbjct: 61 CIQGDITVKKDVERALRGADCVFHLASYGMSGKEMIQYGRVDEVNINGTCHILDACIEFG 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I+RLVY STYNVVFGGKEI+NGNE+LPYFP+D+HVDSY RSKS+AEQLVLK+NGRPFK
Sbjct: 121 IKRLVYTSTYNVVFGGKEILNGNEALPYFPLDDHVDSYSRSKSIAEQLVLKNNGRPFKNK 180
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
+ KCLYTCAVRPAAIYGPGE+RH PRI+SLAKLG++PF IGE +VK DWIYVDNLV A I
Sbjct: 181 SGKCLYTCAVRPAAIYGPGEDRHFPRIISLAKLGVLPFTIGEANVKGDWIYVDNLVHAQI 240
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300
LASMGLLDDIPG++ RPIA+GQ YF++DG P+N +EF+ PLL++L+YDLPK+ L VP+AL
Sbjct: 241 LASMGLLDDIPGREKRPIAAGQSYFINDGSPVNIYEFLRPLLRSLEYDLPKASLPVPYAL 300
Query: 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPRE 360
F+ ++ Y++LYPWLNRWWLPQPL+LPAEVYKVGVTHYFS LKAK+EL YVP+VSPRE
Sbjct: 301 FMSRINCMIYTLLYPWLNRWWLPQPLMLPAEVYKVGVTHYFSYLKAKEELGYVPLVSPRE 360
Query: 361 GMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFKS 420
GMAATISYWQ+RKR+SL+GPT+ WLFC+IG+ LF AYLPDIGPVPI R I LF +S
Sbjct: 361 GMAATISYWQERKRRSLEGPTLQTWLFCIIGMFVLFCAAYLPDIGPVPIFRAISLFFLRS 420
Query: 421 MWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLR 470
M ++R+ F +A +AH+ E V+AW LAK+VDPANA+GWFWQT ALG+FSL+
Sbjct: 421 MAIIRVVFLLATAAHIGEAVYAWHLAKRVDPANARGWFWQTFALGIFSLQ 470
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455641|ref|XP_004145560.1| PREDICTED: short-chain dehydrogenase/reductase family 42E member 1-like [Cucumis sativus] gi|449522962|ref|XP_004168494.1| PREDICTED: short-chain dehydrogenase/reductase family 42E member 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/478 (71%), Positives = 404/478 (84%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLS +EGIEG TF VTGGLG GSALCLEL+RRGA QVRAFDLR SPWS L GV
Sbjct: 1 MHLSASEGIEGNTFTVTGGLGFAGSALCLELLRRGALQVRAFDLRPASPWSDHLKTQGVK 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
IQGDV K DVE+A RGVDCVFH+A+YG+SGKEMLQ GR+DEVNINGTCHV++ACLEFG
Sbjct: 61 IIQGDVTCKKDVERALRGVDCVFHLAAYGLSGKEMLQVGRIDEVNINGTCHVLDACLEFG 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
++RL+Y+STYNVVFG +EIVNGNE LPY PID+HVD+YGRSKS+AEQLVLK+NGRP K
Sbjct: 121 VRRLIYMSTYNVVFGSQEIVNGNEGLPYLPIDDHVDAYGRSKSIAEQLVLKTNGRPLKNR 180
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
N KCL+TCA+R AIYGPGEERH R+VSLAKLGL+PF++G+ S KTDWIYVDNLVLALI
Sbjct: 181 NGKCLHTCAIRSCAIYGPGEERHFTRLVSLAKLGLLPFRVGKQSAKTDWIYVDNLVLALI 240
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300
LASMGLLDDIPG+ P+A+GQPY+VSDG P+N+FEF+ PLL +L YDLP +L VP AL
Sbjct: 241 LASMGLLDDIPGKGKDPVAAGQPYYVSDGHPVNSFEFVKPLLNSLGYDLPNYYLPVPKAL 300
Query: 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPRE 360
LGK F+ Y++LYPWL+RWWLP PL+LPAE+YKVGV++YFS LKAK+EL Y PIV+P+E
Sbjct: 301 PLGKFFALLYTILYPWLDRWWLPHPLMLPAEIYKVGVSNYFSYLKAKEELGYAPIVTPKE 360
Query: 361 GMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFKS 420
GMAATISYWQ+R+RKSLDGPTIY WLFCL+G+ LF A+LPD+GPVP + I LF F+S
Sbjct: 361 GMAATISYWQERERKSLDGPTIYVWLFCLVGMSILFCAAFLPDVGPVPFFKAISLFFFRS 420
Query: 421 MWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRARK 478
+ ++R+ F +A+ HV E ++AW LA+KVDPAN++GWFWQT ALG FSLR LLKRAR
Sbjct: 421 IKVLRMVFLVALLLHVGEAIYAWFLARKVDPANSRGWFWQTFALGFFSLRFLLKRARN 478
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226138|ref|NP_180921.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|16226673|gb|AAL16229.1|AF428460_1 At2g33630/F4P9.40 [Arabidopsis thaliana] gi|2459443|gb|AAB80678.1| putative steroid dehydrogenase [Arabidopsis thaliana] gi|20260208|gb|AAM13002.1| putative steroid dehydrogenase [Arabidopsis thaliana] gi|330253770|gb|AEC08864.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/478 (72%), Positives = 409/478 (85%), Gaps = 1/478 (0%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLSENEG+EG TF+VTGGLG VG+ALCLELVRRGA QVR+FDLR +SPWS L N GV
Sbjct: 1 MHLSENEGVEGNTFVVTGGLGFVGAALCLELVRRGARQVRSFDLRHSSPWSDDLKNSGVR 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
CIQGDV K DV+ A G DCV H+ASYGMSGKEML+FGR DEVNINGTC+V+EA +
Sbjct: 61 CIQGDVTKKQDVDNALDGADCVLHLASYGMSGKEMLRFGRCDEVNINGTCNVLEAAFKHE 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I R+VYVSTYNVVFGGKEI+NGNE LPYFP+D+HVD+Y R+KS+AEQLVLKSNGRPFK N
Sbjct: 121 ITRIVYVSTYNVVFGGKEILNGNEGLPYFPLDDHVDAYSRTKSIAEQLVLKSNGRPFK-N 179
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
K +YTCA+RPAAIYGPGE+RHLPRIV+L KLGL FKIGEPSVK+DWIYV+NLVLA+I
Sbjct: 180 GGKRMYTCAIRPAAIYGPGEDRHLPRIVTLTKLGLALFKIGEPSVKSDWIYVENLVLAII 239
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300
LASMGLLDDIPG++G+P+A+GQPYFVSDG+P+NTFEF+ PLLK+LDYDLPK ++VP AL
Sbjct: 240 LASMGLLDDIPGREGQPVAAGQPYFVSDGYPVNTFEFLRPLLKSLDYDLPKCTISVPFAL 299
Query: 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPRE 360
LGK+F FY+VLYPWL++ WLPQPL+LPAEVYKVGVTHYFS LKAK+EL YVP S +E
Sbjct: 300 SLGKIFQGFYTVLYPWLSKSWLPQPLVLPAEVYKVGVTHYFSYLKAKEELGYVPFKSSKE 359
Query: 361 GMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFKS 420
GMAATISYWQ+RKR+SLDGPT++ W+ IG+ ALFA +LPDIGPVP LR I LF F++
Sbjct: 360 GMAATISYWQERKRRSLDGPTMFTWIAVTIGMSALFAAGWLPDIGPVPFLRAIHLFFFRT 419
Query: 421 MWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRARK 478
+ +++ F +AV HV+EG++AW LAK+VDP NA GWF QT ALG FS+R LLKRA++
Sbjct: 420 ITIVKAVFIVAVVLHVAEGIYAWFLAKRVDPGNAMGWFLQTSALGFFSMRFLLKRAKE 477
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388497514|gb|AFK36823.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/479 (70%), Positives = 405/479 (84%), Gaps = 1/479 (0%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLSENEGIEGKT +VTGGLG VGSALCLELVRRGA++VRAFDLR +SPW +L ++GV
Sbjct: 1 MHLSENEGIEGKTLVVTGGLGFVGSALCLELVRRGAHEVRAFDLRDSSPWFAILKDNGVR 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
CIQGD+V K DVE A RGVDCVFH+A++GMSGK MLQ RVD+VNI GTCHV++ACL G
Sbjct: 61 CIQGDIVRKEDVESALRGVDCVFHLAAFGMSGKGMLQLTRVDQVNITGTCHVLDACLHLG 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I+RLVY STYNVVF G+ IVNG ESLPYFPID HVD YGRSKS+AEQLVLK+N RPFK +
Sbjct: 121 IKRLVYCSTYNVVFAGQRIVNGTESLPYFPIDHHVDPYGRSKSIAEQLVLKNNARPFKND 180
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
CLYTCAVRPAAIYGPGE+RHLPRI++ AKLGL+ F IG+ +VK+DW++V+NLVLALI
Sbjct: 181 AGNCLYTCAVRPAAIYGPGEDRHLPRIITTAKLGLLLFTIGDQTVKSDWVFVENLVLALI 240
Query: 241 LASMGLLDDIPGQ-KGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHA 299
LASMGLLDD G+ K RPIA+GQ YF+SDG P+NTFEF+ PLL++L+Y+LPK+ LAV HA
Sbjct: 241 LASMGLLDDSAGKGKQRPIAAGQAYFISDGSPVNTFEFLQPLLRSLEYELPKTSLAVDHA 300
Query: 300 LFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPR 359
L LG++ Y++LYPWL+RWWLPQP ILP+ V+KVGVTHYFS LKAK+E+ YVP+ S R
Sbjct: 301 LVLGRICQGVYTILYPWLDRWWLPQPFILPSAVHKVGVTHYFSYLKAKEEIGYVPMASSR 360
Query: 360 EGMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFK 419
EGMA+TISYWQ RK +LDGPTIY WLFC+IG+ +LF A+LPD+G V +LR LF+F+
Sbjct: 361 EGMASTISYWQQRKMITLDGPTIYTWLFCVIGMISLFCAAFLPDVGIVFLLRATSLFVFR 420
Query: 420 SMWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRARK 478
SMWM+RL F +A +AHV E ++AW LAK+VD ANA+GWFWQT ALG FSLR LLKRARK
Sbjct: 421 SMWMIRLVFILATAAHVFEAIYAWYLAKRVDHANARGWFWQTFALGYFSLRFLLKRARK 479
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826819|ref|XP_002881292.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327131|gb|EFH57551.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/477 (72%), Positives = 405/477 (84%), Gaps = 1/477 (0%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLSENEGIEG TF+VTGGLG VG+ALCLELVRRGA QVR+FDL +SPWS L N GV
Sbjct: 1 MHLSENEGIEGNTFVVTGGLGFVGAALCLELVRRGARQVRSFDLHHSSPWSDDLKNSGVR 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
CIQGDV K DV+KA G DCV H+AS+GMSGKEMLQFGR DEVNINGTC+V+EA +
Sbjct: 61 CIQGDVTKKGDVDKALDGADCVLHLASHGMSGKEMLQFGRCDEVNINGTCNVLEAAFKHE 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I RLVYVSTYNVVFGGKEI+NGNE LPYFP+D+HVD+YGRSKS+AEQLVLKSNGRPFK N
Sbjct: 121 ITRLVYVSTYNVVFGGKEILNGNEGLPYFPLDDHVDAYGRSKSIAEQLVLKSNGRPFK-N 179
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
K +YTCA+RPAAIYGPGE+RHLPRIV+LAKLGL FKIGEPSVKTDWIYV+NLVLA+I
Sbjct: 180 GGKRMYTCAIRPAAIYGPGEDRHLPRIVTLAKLGLALFKIGEPSVKTDWIYVENLVLAII 239
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300
LASMGLLDDIPG+ G P+A+GQPYFVSDG P+NTFEF+ PLLK+LDYDLPK ++VP AL
Sbjct: 240 LASMGLLDDIPGRDGHPVAAGQPYFVSDGSPVNTFEFLRPLLKSLDYDLPKFTISVPSAL 299
Query: 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPRE 360
LGK+F Y++LYPWL++ WLPQPL+LPAEVYKVGVTHYFS LKAK+EL YVP S +E
Sbjct: 300 SLGKIFQGVYTLLYPWLSKSWLPQPLVLPAEVYKVGVTHYFSYLKAKEELGYVPFKSSKE 359
Query: 361 GMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFKS 420
GMAATISYWQ+RKR+SLDGPTI+ W+ ++G+ ALFA +LPDIGPVP LR + LF F++
Sbjct: 360 GMAATISYWQERKRRSLDGPTIFTWIAVILGMSALFAAGWLPDIGPVPFLRALHLFFFRT 419
Query: 421 MWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRAR 477
+ +++ F ++V HV EG++A LAK+VDP NA GWF QT ALG FS+R LLKRA+
Sbjct: 420 ITVVKAVFIVSVILHVGEGIYALLLAKRVDPGNAMGWFLQTCALGFFSMRFLLKRAK 476
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564410|ref|XP_003550447.1| PREDICTED: short-chain dehydrogenase/reductase family 42E member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/480 (70%), Positives = 409/480 (85%), Gaps = 2/480 (0%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLSENEGIEGKTF+VTGGLG VGS LCLEL+RRGA +VRAFDLR +SPWS L + GV
Sbjct: 12 MHLSENEGIEGKTFVVTGGLGFVGSGLCLELIRRGAVEVRAFDLRLSSPWSRPLKDKGVL 71
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
CIQGDV K DVE+A RG DCVFH+A++GMSGKEMLQFGRVDEVNINGTCHVI+ACL G
Sbjct: 72 CIQGDVARKEDVERALRGADCVFHLAAFGMSGKEMLQFGRVDEVNINGTCHVIDACLYLG 131
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I+RLVY ST NVVFGG++I+NGNE+LPYFPID HVD YGRSKS+AEQLVLK+N R K +
Sbjct: 132 IKRLVYCSTCNVVFGGQQIINGNETLPYFPIDHHVDPYGRSKSIAEQLVLKNNARTLKSD 191
Query: 181 N--RKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238
+ LYTCAVRPAAIYGPGE+RHLPRIV++A+LGL+ F+IG+ +VK+DWI+VDNLVLA
Sbjct: 192 SSGNHRLYTCAVRPAAIYGPGEDRHLPRIVTMARLGLLLFRIGDQTVKSDWIFVDNLVLA 251
Query: 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPH 298
LILASMGLLDD + RP+A+GQ YF+SDG P+N+FEF+ PLL++L Y+LPK+ L V
Sbjct: 252 LILASMGLLDDNLSKGKRPVAAGQAYFISDGSPVNSFEFLQPLLRSLGYELPKTSLPVER 311
Query: 299 ALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSP 358
AL LG++ Y++LYPWLNRWWLPQP ILP+EV+KVGVTHYFS LKAK+E+ Y P+V+
Sbjct: 312 ALVLGRICWAVYTILYPWLNRWWLPQPFILPSEVHKVGVTHYFSYLKAKEEIGYAPMVTS 371
Query: 359 REGMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIF 418
REGMA TISYWQ+RKR +LDGPTIYAWLFC+IG+ +LF A+LPDIG + +LRT LF+F
Sbjct: 372 REGMALTISYWQERKRTTLDGPTIYAWLFCVIGMISLFCGAFLPDIGIMSLLRTTCLFVF 431
Query: 419 KSMWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRARK 478
+SMW+ RL F +A +AH++E ++AW LAK+VDPANA+GWFWQT ALG FSLRLLLKRARK
Sbjct: 432 RSMWVTRLVFLLATAAHIAEAIYAWYLAKRVDPANARGWFWQTFALGFFSLRLLLKRARK 491
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553309|ref|XP_003544999.1| PREDICTED: short-chain dehydrogenase/reductase family 42E member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/478 (70%), Positives = 407/478 (85%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLSENEGIEGK F+VTGGLG VGSALCLEL+RRGA +VRAFDLR +SPWS L GV
Sbjct: 1 MHLSENEGIEGKAFVVTGGLGFVGSALCLELIRRGAREVRAFDLRLSSPWSRPLKVKGVL 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
C+QGDV K DVE+ RG DCVFH+A++GMSGKEMLQFGR+DEVNINGTCHVI+ACL G
Sbjct: 61 CVQGDVARKEDVERVLRGSDCVFHLAAFGMSGKEMLQFGRIDEVNINGTCHVIDACLHLG 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I+RLVY ST NVVFGG++I+NGNE+LPYFPID HVD YGRSKS+AEQLVLK+N R K +
Sbjct: 121 IKRLVYCSTNNVVFGGQQIINGNETLPYFPIDHHVDPYGRSKSIAEQLVLKNNARTLKND 180
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
+ LYTCAVRPAAIYGPGE+RHLPRIV+LAKLGL+ F+IG+ +VK+DW++VDNLVLALI
Sbjct: 181 SGNRLYTCAVRPAAIYGPGEDRHLPRIVTLAKLGLLLFRIGDQTVKSDWLFVDNLVLALI 240
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300
LASMGLLDD + RP+A+GQ YF+SDG P+N+FEF+ PLL++LDY+LPK+ L V AL
Sbjct: 241 LASMGLLDDNLSKGKRPVAAGQAYFISDGSPVNSFEFLHPLLRSLDYELPKTSLPVDRAL 300
Query: 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPRE 360
L ++ Y++LYPWLNRWWLPQP ILP+EV+KVGVTHYFS LKAK+E+ Y P+V+ RE
Sbjct: 301 VLSRICWAVYTILYPWLNRWWLPQPFILPSEVHKVGVTHYFSYLKAKEEIGYFPMVTSRE 360
Query: 361 GMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFKS 420
GMA TISYWQ+RKR +LDGPTIYAWLFC+IG+ +LF A+LPDIG + +LR LF+F+S
Sbjct: 361 GMALTISYWQERKRTTLDGPTIYAWLFCVIGMISLFCGAFLPDIGIMSLLRATCLFVFRS 420
Query: 421 MWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRARK 478
MW+ RL F +A +AH++E ++AW LAK++DPANA+GWFWQT ALG+FSLRLLLKRARK
Sbjct: 421 MWVTRLVFLLATAAHIAEAIYAWYLAKRMDPANARGWFWQTFALGMFSLRLLLKRARK 478
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| TAIR|locus:2051063 | 480 | AT2G33630 [Arabidopsis thalian | 0.997 | 0.993 | 0.721 | 1.5e-193 | |
| UNIPROTKB|I3L900 | 390 | SDR42E1 "Uncharacterized prote | 0.673 | 0.825 | 0.492 | 4e-74 | |
| UNIPROTKB|J9NYA9 | 393 | SDR42E1 "Uncharacterized prote | 0.682 | 0.829 | 0.483 | 1.1e-73 | |
| UNIPROTKB|Q8WUS8 | 393 | SDR42E1 "Short-chain dehydroge | 0.784 | 0.954 | 0.444 | 3.6e-73 | |
| MGI|MGI:1921282 | 394 | Sdr42e1 "short chain dehydroge | 0.686 | 0.832 | 0.479 | 1.2e-72 | |
| UNIPROTKB|F1MDX4 | 398 | SDR42E1 "Short-chain dehydroge | 0.682 | 0.819 | 0.469 | 1.1e-71 | |
| UNIPROTKB|G3X7Y2 | 393 | SDR42E1 "Short-chain dehydroge | 0.682 | 0.829 | 0.469 | 1.1e-71 | |
| UNIPROTKB|Q32L94 | 393 | SDR42E1 "Short-chain dehydroge | 0.682 | 0.829 | 0.469 | 1.1e-71 | |
| UNIPROTKB|E1C6D8 | 391 | SDR42E1 "Uncharacterized prote | 0.686 | 0.838 | 0.457 | 2.1e-70 | |
| ZFIN|ZDB-GENE-051120-63 | 400 | sdr42e1 "short chain dehydroge | 0.778 | 0.93 | 0.407 | 1.5e-67 |
| TAIR|locus:2051063 AT2G33630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1875 (665.1 bits), Expect = 1.5e-193, P = 1.5e-193
Identities = 345/478 (72%), Positives = 409/478 (85%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH 60
MHLSENEG+EG TF+VTGGLG VG+ALCLELVRRGA QVR+FDLR +SPWS L N GV
Sbjct: 1 MHLSENEGVEGNTFVVTGGLGFVGAALCLELVRRGARQVRSFDLRHSSPWSDDLKNSGVR 60
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
CIQGDV K DV+ A G DCV H+ASYGMSGKEML+FGR DEVNINGTC+V+EA +
Sbjct: 61 CIQGDVTKKQDVDNALDGADCVLHLASYGMSGKEMLRFGRCDEVNINGTCNVLEAAFKHE 120
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I R+VYVSTYNVVFGGKEI+NGNE LPYFP+D+HVD+Y R+KS+AEQLVLKSNGRPFK N
Sbjct: 121 ITRIVYVSTYNVVFGGKEILNGNEGLPYFPLDDHVDAYSRTKSIAEQLVLKSNGRPFK-N 179
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
K +YTCA+RPAAIYGPGE+RHLPRIV+L KLGL FKIGEPSVK+DWIYV+NLVLA+I
Sbjct: 180 GGKRMYTCAIRPAAIYGPGEDRHLPRIVTLTKLGLALFKIGEPSVKSDWIYVENLVLAII 239
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300
LASMGLLDDIPG++G+P+A+GQPYFVSDG+P+NTFEF+ PLLK+LDYDLPK ++VP AL
Sbjct: 240 LASMGLLDDIPGREGQPVAAGQPYFVSDGYPVNTFEFLRPLLKSLDYDLPKCTISVPFAL 299
Query: 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPRE 360
LGK+F FY+VLYPWL++ WLPQPL+LPAEVYKVGVTHYFS LKAK+EL YVP S +E
Sbjct: 300 SLGKIFQGFYTVLYPWLSKSWLPQPLVLPAEVYKVGVTHYFSYLKAKEELGYVPFKSSKE 359
Query: 361 GMAATISYWQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLPDIGPVPILRTIGLFIFKS 420
GMAATISYWQ+RKR+SLDGPT++ W+ IG+ ALFA +LPDIGPVP LR I LF F++
Sbjct: 360 GMAATISYWQERKRRSLDGPTMFTWIAVTIGMSALFAAGWLPDIGPVPFLRAIHLFFFRT 419
Query: 421 MWMMRLAFAIAVSAHVSEGVFAWCLAKKVDPANAKGWFWQTLALGVFSLRLLLKRARK 478
+ +++ F +AV HV+EG++AW LAK+VDP NA GWF QT ALG FS+R LLKRA++
Sbjct: 420 ITIVKAVFIVAVVLHVAEGIYAWFLAKRVDPGNAMGWFLQTSALGFFSMRFLLKRAKE 477
|
|
| UNIPROTKB|I3L900 SDR42E1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 169/343 (49%), Positives = 219/343 (63%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T L+TGG G+ G L L ++G +V FD+ +SP +H I GV I+GD+ D
Sbjct: 9 ETVLITGGGGYFGFRLGCALNQKGL-RVILFDV--SSP-AHT-IPEGVKFIRGDIRLLAD 63
Query: 72 VEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
VE+A D CVFH+ASYGMSG+E L R+++VN+ GT +V++AC G+ RLVY ST
Sbjct: 64 VERAFEDADVTCVFHIASYGMSGREQLNRSRIEDVNVGGTDNVLQACRSRGVPRLVYTST 123
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+NV+FGG+ I NG+ESLPY P+ H D Y R+KSVAE+ VL++NG+ L TCA
Sbjct: 124 FNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSVAEKKVLEANGKALAX-----LRTCA 178
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249
+RPA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILAS L D
Sbjct: 179 LRPAGIYGPGEQRHLPRIVSYLEKGLFRFVYGDPKSLVEFVHVDNLVQAHILASEALKAD 238
Query: 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309
KG +ASGQPYF+SDG P+N FEF PL++ L Y P L +P F F+F
Sbjct: 239 ----KGH-VASGQPYFISDGRPVNNFEFFRPLVEGLGYKFPSVRLPLPLIYF----FAFL 289
Query: 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY 352
+ Y L R + QP + EVYK VTHYFSL KAK EL Y
Sbjct: 290 TEMAYFLLGRLYNFQPFLTRTEVYKTAVTHYFSLEKAKKELGY 332
|
|
| UNIPROTKB|J9NYA9 SDR42E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 166/343 (48%), Positives = 222/343 (64%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T L+TGG G+ G L L ++G + V FD+ +SP +H I G+ I+GD+ D
Sbjct: 9 ETVLITGGGGYFGFRLGCALNQKG-FHVILFDI--SSP-THS-IPEGIEFIRGDIRHLSD 63
Query: 72 VEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
VEKA + D CVFH+ASYGMSG+E L ++EVN+ GT ++++ C G+ RLVY ST
Sbjct: 64 VEKAFQDADVTCVFHIASYGMSGREQLNRSLIEEVNVGGTDNILQVCRRRGVPRLVYTST 123
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AE+ VL+++G +++ L TCA
Sbjct: 124 FNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLEASGTTLLRSDG-VLRTCA 182
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249
+RPA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILAS L D
Sbjct: 183 LRPAGIYGPGEQRHLPRIVSYIERGLFKFVYGDPRSLVEFVHVDNLVQAHILASEALKAD 242
Query: 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309
KG IASGQPYF+SDG P+N FEF PL++ L Y P + VP L F+F
Sbjct: 243 ----KGH-IASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPS--VRVPLTLIY--CFAFL 293
Query: 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY 352
+++ L R + QP + EVYK GVTHYFSL KAK EL Y
Sbjct: 294 TEMVHFILGRLYNFQPFLTRTEVYKTGVTHYFSLDKAKKELGY 336
|
|
| UNIPROTKB|Q8WUS8 SDR42E1 "Short-chain dehydrogenase/reductase family 42E member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 175/394 (44%), Positives = 234/394 (59%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
++ L+TGG G+ G L L + G + + FD+ +SP I G+ IQGD+ D
Sbjct: 9 ESVLITGGSGYFGFRLGCALNQNGVHVI-LFDI--SSPAQ--TIPEGIKFIQGDIRHLSD 63
Query: 72 VEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
VEKA + D CVFH+ASYGMSG+E L + EVN+ GT ++++ C + RLVY ST
Sbjct: 64 VEKAFQDADVTCVFHIASYGMSGREQLNRNLIKEVNVRGTDNILQVCQRRRVPRLVYTST 123
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AEQ VL++N P + + L TCA
Sbjct: 124 FNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEQKVLEANATPLDRGDG-VLRTCA 182
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249
+RPA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILAS L D
Sbjct: 183 LRPAGIYGPGEQRHLPRIVSYIEKGLFKFVYGDPRSLVEFVHVDNLVQAHILASEALRAD 242
Query: 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309
KG IASGQPYF+SDG P+N FEF PL++ L Y P + L P L L F+F
Sbjct: 243 ----KGH-IASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPSTRL--P--LTLVYCFAFL 293
Query: 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY-VPIVSPREGMAATISY 368
+++ L R + QP + EVYK GVTHYFSL KAK EL Y +E + ++
Sbjct: 294 TEMVHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGYKAQPFDLQEAVEWFKAH 353
Query: 369 WQDRKRKSLDGPTIYAWLFCLIGLPALFATAYLP 402
R S D + W L+ L + +LP
Sbjct: 354 GHGRSSGSRDSEC-FVWDGLLVFLLIIAVLMWLP 386
|
|
| MGI|MGI:1921282 Sdr42e1 "short chain dehydrogenase/reductase family 42E, member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 166/346 (47%), Positives = 219/346 (63%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T L+TGG G+ G L L ++GA +V FD+ P +L G+ + GD+ D
Sbjct: 9 ETVLITGGGGYFGFRLGCALNQKGA-RVILFDI--TQPAQNL--PEGIKFVCGDIRCLAD 63
Query: 72 VEKA---ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
VE A A V CVFHVASYGMSG+E L +++EVN+ GT +++ ACLE G+ RLVY S
Sbjct: 64 VETAFQDAEKVACVFHVASYGMSGREQLNKTQIEEVNVGGTENILRACLERGVPRLVYTS 123
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTC 188
T+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AE+ VL++NG FK+ + L TC
Sbjct: 124 TFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLEANGLAFKQGDG-ILRTC 182
Query: 189 AVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLD 248
A+RPA IYG GE+RHLPRIVS + GL F G+P ++++VDNL A ILAS L
Sbjct: 183 AIRPAGIYGAGEQRHLPRIVSYIERGLFRFVYGDPQSLVEFVHVDNLAKAHILASEALKA 242
Query: 249 DIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSF 308
D KG +ASGQPYF+SDG P+N FEF PL++ L Y P + L P L +F
Sbjct: 243 D----KGH-VASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPSTRL--PLTLIY--CLAF 293
Query: 309 FYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVP 354
+ + + R + QP + EVYK GVTHYFSL KAK EL + P
Sbjct: 294 LVEMTHFIVGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGFEP 339
|
|
| UNIPROTKB|F1MDX4 SDR42E1 "Short-chain dehydrogenase/reductase family 42E member 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 161/343 (46%), Positives = 214/343 (62%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T L+TGG G+ G L L G + + FD+ + P I G+ I GD+ D
Sbjct: 9 ETVLITGGGGYFGFRLGCALNLLGVHVI-LFDI--SRPAQ--TIPEGIRFILGDIRCLSD 63
Query: 72 VEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
+E A +GVD CVFH+ASYGMSG+E L ++E+N+ GT ++++AC G+ RLVY ST
Sbjct: 64 IENAFQGVDVACVFHIASYGMSGREQLNRSLIEEINVGGTDNILQACRRRGVPRLVYTST 123
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AE+ VL +NG ++ L TCA
Sbjct: 124 FNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLSANGTALERGGG-VLSTCA 182
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249
+RPA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILAS L
Sbjct: 183 LRPAGIYGPGEQRHLPRIVSYIEKGLFRFVYGDPKSLVEFVHVDNLVQAHILASEAL--- 239
Query: 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309
KG IA+GQPYF+SDG P+N FEF PL++ L Y P + L P L F+F
Sbjct: 240 -KANKGH-IAAGQPYFISDGRPVNNFEFFRPLVEGLGYKFPSTRL--PLTLIY--CFAFL 293
Query: 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY 352
+ + L R + QP + EVYK GVTHYFSL KA+ EL Y
Sbjct: 294 TEMTHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKARKELGY 336
|
|
| UNIPROTKB|G3X7Y2 SDR42E1 "Short-chain dehydrogenase/reductase family 42E member 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 161/343 (46%), Positives = 214/343 (62%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T L+TGG G+ G L L G + + FD+ + P I G+ I GD+ D
Sbjct: 9 ETVLITGGGGYFGFRLGCALNLLGVHVI-LFDI--SRPAQ--TIPEGIRFILGDIRCLSD 63
Query: 72 VEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
+E A +GVD CVFH+ASYGMSG+E L ++E+N+ GT ++++AC G+ RLVY ST
Sbjct: 64 IENAFQGVDVACVFHIASYGMSGREQLNRSLIEEINVGGTDNILQACRRRGVPRLVYTST 123
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AE+ VL +NG ++ L TCA
Sbjct: 124 FNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLSANGTALERGGG-VLSTCA 182
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249
+RPA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILAS L
Sbjct: 183 LRPAGIYGPGEQRHLPRIVSYIEKGLFRFVYGDPKSLVEFVHVDNLVQAHILASEAL--- 239
Query: 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309
KG IA+GQPYF+SDG P+N FEF PL++ L Y P + L P L F+F
Sbjct: 240 -KANKGH-IAAGQPYFISDGRPVNNFEFFRPLVEGLGYKFPSTRL--PLTLIY--CFAFL 293
Query: 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY 352
+ + L R + QP + EVYK GVTHYFSL KA+ EL Y
Sbjct: 294 TEMTHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKARKELGY 336
|
|
| UNIPROTKB|Q32L94 SDR42E1 "Short-chain dehydrogenase/reductase family 42E member 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 161/343 (46%), Positives = 214/343 (62%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T L+TGG G+ G L L G + + FD+ + P I G+ I GD+ D
Sbjct: 9 ETVLITGGGGYFGFRLGCALNLLGVHVI-LFDI--SHPAQ--TIPEGIRFILGDIRCLSD 63
Query: 72 VEKAARGVD--CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
+E A +GVD CVFH+ASYGMSG+E L ++E+N+ GT ++++AC G+ RLVY ST
Sbjct: 64 IENAFQGVDVACVFHIASYGMSGREQLNRSLIEEINVGGTDNILQACRRRGVPRLVYTST 123
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+NV+FGG+ I NG+ESLPY P+ H D Y R+KS+AE+ VL +NG ++ L TCA
Sbjct: 124 FNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLSANGTALERGGG-VLSTCA 182
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249
+RPA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILAS L
Sbjct: 183 LRPAGIYGPGEQRHLPRIVSYIEKGLFRFVYGDPKSLVEFVHVDNLVQAHILASEAL--- 239
Query: 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309
KG IA+GQPYF+SDG P+N FEF PL++ L Y P + L P L F+F
Sbjct: 240 -KANKGH-IAAGQPYFISDGRPVNNFEFFRPLVEGLGYKFPSTRL--PLTLIY--CFAFL 293
Query: 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY 352
+ + L R + QP + EVYK GVTHYFSL KA+ EL Y
Sbjct: 294 TEMTHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKARKELGY 336
|
|
| UNIPROTKB|E1C6D8 SDR42E1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 157/343 (45%), Positives = 213/343 (62%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+T L+TGG G+ G L + ++G V FD+ P + G+ +QG+V +
Sbjct: 9 ETVLITGGGGYFGFRLGCTIYKKGV-DVILFDV--TKPLQP--VPEGIKFMQGNVCCLAE 63
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
VE+A + V CVFH+ASYGMSG+E L +++VN+ GT +VI+AC G+ LVY STYN
Sbjct: 64 VEEALKDVICVFHIASYGMSGREQLNRKLIEDVNVKGTENVIQACKSTGVSSLVYTSTYN 123
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVR 191
V+FGG+ I NG+ESLPY P+ H D Y R+KS+AE VLK+NG N + L TCA+R
Sbjct: 124 VIFGGQIIENGDESLPYLPLHLHPDHYSRTKSLAEMKVLKANGTELG-NGKGVLRTCALR 182
Query: 192 PAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251
PA IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILA + +
Sbjct: 183 PAGIYGPGEQRHLPRIVSYIERGLFKFVYGDPLSLVEFVHVDNLVQAHILA----FEALK 238
Query: 252 GQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYS 311
K + IA+GQ YF+SDG P+N FEF PL++ L Y P L + F F+F
Sbjct: 239 ANK-KHIAAGQAYFISDGRPVNNFEFFRPLVEGLGYKFPTCRLPLSLVYF----FAFLTE 293
Query: 312 VLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVP 354
V++ + + QPL+ EVYK GVTHYFS+ KA+ EL Y P
Sbjct: 294 VVHFLVGHVYNFQPLLTRTEVYKTGVTHYFSMEKARKELGYEP 336
|
|
| ZFIN|ZDB-GENE-051120-63 sdr42e1 "short chain dehydrogenase/reductase family 42E, member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 161/395 (40%), Positives = 234/395 (59%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
L TG +L L++ + +V FD+ + P L G+ ++ D+ VEK
Sbjct: 24 LTTGADDKTFVSLACALLKTSS-KVVLFDV--SPPIQDL--PEGLIFMRADIRDYAQVEK 78
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
A RG CVFH+ASYGMSG+E L ++EVN+ GT +++ AC+ + RL+Y ST+NVVF
Sbjct: 79 AVRGSHCVFHIASYGMSGREQLNRKLIEEVNVKGTENILRACVAHSVPRLIYTSTFNVVF 138
Query: 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194
GG+EI NG+ESLPY P+ H D Y R+KS+AE VLK+N N+ L TCA+RPA
Sbjct: 139 GGQEIKNGDESLPYLPLHLHPDHYSRTKSIAEMQVLKANNLALS-NSTGVLRTCALRPAG 197
Query: 195 IYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQK 254
IYGPGE+RHLPRIVS + G+ F G+P ++++VDNLV A +LA+ L + Q+
Sbjct: 198 IYGPGEQRHLPRIVSYIENGIFRFVYGDPDSLVEFVHVDNLVSAHLLAADALTEK---QQ 254
Query: 255 GRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLY 314
R A+GQ YF+SDG P+N FEF PL++ L Y P L + F F+F +++
Sbjct: 255 CR--AAGQAYFISDGRPVNNFEFFRPLVEGLGYSFPTLRLPISMIYF----FAFLTEMVH 308
Query: 315 PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR-- 372
+ R + QPL+ EVYK GVTHYFS+ KA++EL Y P + E + + ++Q R
Sbjct: 309 FVVGRIYNFQPLLTRTEVYKTGVTHYFSMRKAREELGYEPKLYDLEDV---VQWFQARGH 365
Query: 373 -KRKSLDG-PTIYAWLFCLIGLPALFATAYLPDIG 405
K++S + +F ++ A+ + LP +G
Sbjct: 366 GKKRSRSSIRKLILDVFVVVAFVAVLLSC-LPVVG 399
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 5.1.3.10 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 478 | |||
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 1e-114 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 7e-98 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 3e-85 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 1e-72 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 2e-43 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-34 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 5e-33 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 1e-26 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 4e-26 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 6e-26 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 2e-20 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 6e-20 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 2e-19 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 7e-19 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 3e-17 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 1e-16 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 2e-16 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 8e-16 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 8e-16 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 3e-15 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 7e-15 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 5e-14 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 1e-13 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 5e-13 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 1e-12 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 1e-12 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 4e-12 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 1e-11 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 1e-11 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 2e-11 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 3e-11 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 1e-10 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 2e-09 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 3e-09 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 3e-09 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 1e-08 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 2e-08 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 2e-08 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 2e-08 | |
| cd05266 | 251 | cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | 3e-08 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 7e-08 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 2e-07 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 2e-07 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 5e-07 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 6e-07 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 7e-07 | |
| PLN02896 | 353 | PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | 9e-07 | |
| PLN02662 | 322 | PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase | 1e-06 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 1e-06 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 2e-06 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 2e-06 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 2e-06 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 3e-06 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 5e-06 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 5e-06 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 5e-06 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 9e-06 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 2e-05 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 2e-05 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 3e-05 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 4e-05 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 4e-05 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 5e-05 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 5e-05 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 6e-05 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 7e-05 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 7e-05 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 8e-05 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 1e-04 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 1e-04 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 1e-04 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 2e-04 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-04 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 2e-04 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 2e-04 | |
| PLN02989 | 325 | PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase | 3e-04 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 3e-04 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 5e-04 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 5e-04 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 6e-04 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 6e-04 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 8e-04 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 0.001 | |
| cd05259 | 282 | cd05259, PCBER_SDR_a, phenylcoumaran benzylic ethe | 0.001 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 0.001 | |
| PLN00198 | 338 | PLN00198, PLN00198, anthocyanidin reductase; Provi | 0.001 | |
| cd05231 | 259 | cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript | 0.002 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 0.002 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 0.002 | |
| PLN02650 | 351 | PLN02650, PLN02650, dihydroflavonol-4-reductase | 0.002 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 0.003 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 0.003 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 339 bits (871), Expect = e-114
Identities = 167/342 (48%), Positives = 216/342 (63%), Gaps = 15/342 (4%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV 72
+ L+TGG G+ G L L + G V FD+R P L G+ IQ DV +
Sbjct: 1 SVLITGGGGYFGFRLGCALAKSGV-HVILFDIR--RPQQEL--PEGIKFIQADVRDLSQL 55
Query: 73 EKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132
EKA GVDCVFH+ASYGMSG+E L ++E+N+ GT ++I+ C+ + RL+Y ST+NV
Sbjct: 56 EKAVAGVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVRRRVPRLIYTSTFNV 115
Query: 133 VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRP 192
+FGG+ I NG+ESLPY P+D HVD Y R+KS+AEQLVLK+N P NN L TCA+RP
Sbjct: 116 IFGGQPIRNGDESLPYLPLDLHVDHYSRTKSIAEQLVLKANNMPL-PNNGGVLRTCALRP 174
Query: 193 AAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPG 252
A IYGPGE+RHLPRIVS + GL F G+P ++++VDNLV A ILA+ L
Sbjct: 175 AGIYGPGEQRHLPRIVSYIEKGLFMFVYGDPKSLVEFVHVDNLVQAHILAAEALTTA--- 231
Query: 253 QKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSV 312
KG IASGQ YF+SDG P+N FEF PL++ L Y P L +P +L F+F +
Sbjct: 232 -KGY-IASGQAYFISDGRPVNNFEFFRPLVEGLGYSFP--SLRLPLSLVY--FFAFLTEM 285
Query: 313 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVP 354
++ L QPL+ EVYK GVTHYFS+ KA+ EL Y P
Sbjct: 286 VHFALGPICNFQPLLTRTEVYKTGVTHYFSIEKARAELGYEP 327
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 7e-98
Identities = 113/285 (39%), Positives = 155/285 (54%), Gaps = 15/285 (5%)
Query: 15 LVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGV-HCIQGDVVSKIDV 72
LVTGG G +G + L+R G +VR FDLR + V I+GDV K D+
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVITYIEGDVTDKQDL 60
Query: 73 EKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132
+A +G D V H A+ + +VN+ GT +V++AC++ G++ LVY S+ V
Sbjct: 61 RRALQGSDVVIHTAAIIDVFG-KAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSMEV 119
Query: 133 VFG---GKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
V G+ IVNG+E+ PY H D Y SK++AE+LVLK+NG K R LYTCA
Sbjct: 120 VGPNSYGQPIVNGDETTPYEST--HQDPYPESKALAEKLVLKANGSTLKNGGR--LYTCA 175
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249
+RPA I+G G+ P +V L K GL F+ G+ +V +D +YV N+ A ILA+ L D
Sbjct: 176 LRPAGIFGEGDPFLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVGNVAWAHILAARALQD- 234
Query: 250 IPGQKGRPIASGQPYFVSDGFPIN-TFEFIGPLLKTLDYDLPKSW 293
K +GQ YF+SD P N +F LLK L LP S
Sbjct: 235 ---PKKASSIAGQFYFISDDTPHNSYDDFNRTLLKALGLRLPSSI 276
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 265 bits (678), Expect = 3e-85
Identities = 129/362 (35%), Positives = 187/362 (51%), Gaps = 42/362 (11%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH-GVHCIQGDVVSKIDVE 73
LVTGG G G L +L+ RG VR+FD+ + H + ++GD+ + DVE
Sbjct: 3 LVTGGSGFFGERLVKQLLERGGTYVRSFDIAP-PGEALSAWQHPNIEFLKGDITDRNDVE 61
Query: 74 KAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133
+A G DCVFH A+ EVN+ GT +V++AC G+Q+ VY S+ +V+
Sbjct: 62 QALSGADCVFHTAAIVPLAGPR---DLYWEVNVGGTQNVLDACQRCGVQKFVYTSSSSVI 118
Query: 134 FGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPA 193
FGG+ I NG+E+LPY P D Y +K++AE +VL++NGR L TCA+RPA
Sbjct: 119 FGGQNIHNGDETLPYPP--LDSDMYAETKAIAEIIVLEANGR-------DDLLTCALRPA 169
Query: 194 AIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQ 253
I+GPG++ +P + A+ GLV F G + D+ YV NL A ILA+ L+
Sbjct: 170 GIFGPGDQGLVPILFEWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILAAAALVKGKT-- 227
Query: 254 KGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDY-DLPKSWLAVPHAL---FLGKVFSF- 308
SGQ YF++D P N FE + P+ K L + PK L+ P A L ++ SF
Sbjct: 228 -----ISGQTYFITDAEPHNMFELLRPVWKALGFGSRPKIRLSGPLAYCAALLSELVSFM 282
Query: 309 --FYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATI 366
Y V P+ R + YFS+ KA+ +L Y P S EG+ T+
Sbjct: 283 LGPYFVFSPFYVR--------------ALVTPMYFSIAKAQKDLGYAPRYSNEEGLIETL 328
Query: 367 SY 368
++
Sbjct: 329 NW 330
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 1e-72
Identities = 127/357 (35%), Positives = 194/357 (54%), Gaps = 28/357 (7%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV 72
+ LV GG G +G L +L+RRG V FD+R V GD+ D+
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSSSG-RVQFHTGDLTDPQDL 59
Query: 73 EKA--ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
EKA +G + VFH AS + L + +VN+ GT +VIEAC + G+++LVY S+
Sbjct: 60 EKAFNEKGPNVVFHTASPDHGSNDDLYY----KVNVQGTRNVIEACRKCGVKKLVYTSSA 115
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAV 190
+VVF G++I+NG+ESLPY D+H D+Y +K++AE+LVLK+N L TCA+
Sbjct: 116 SVVFNGQDIINGDESLPY--PDKHQDAYNETKALAEKLVLKANDPESG------LLTCAL 167
Query: 191 RPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250
RPA I+GPG+ + +P ++ AK G F+IG+ + D+ YV+N+ A ILA+ LL
Sbjct: 168 RPAGIFGPGDRQLVPGLLKAAKNGKTKFQIGDGNNLFDFTYVENVAHAHILAADALLS-- 225
Query: 251 PGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSW-LAVPHALFLGKVFSFF 309
+G+ +F+++ PI ++F + + L Y+ P S L P AL+L + +
Sbjct: 226 --SSHAETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPRPVALYLASLLEWT 283
Query: 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATI 366
VL +P P V + T YF++ KAK L Y P+V+ EG+ T+
Sbjct: 284 CKVLG--------KEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGIERTL 332
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 2e-43
Identities = 118/375 (31%), Positives = 164/375 (43%), Gaps = 45/375 (12%)
Query: 15 LVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPW-----SHLLINHGVHCIQGDVV 67
LVTGG G +G + L+ R ++R D + P V I+GD+
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLD-KAFGPELIEHFEKSQGKTYVTDIEGDIK 61
Query: 68 SKIDVEKAARGVDCVFHVAS----YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123
+ +A +GV V H A+ +G E L+ EVN+NGT V+EAC++ ++R
Sbjct: 62 DLSFLFRACQGVSVVIHTAAIVDVFGPPNYEELE-----EVNVNGTQAVLEACVQNNVKR 116
Query: 124 LVYVSTYNVV---FGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
LVY S+ V F G+ I NG E PY D Y SK +AE +VL +NG P K
Sbjct: 117 LVYTSSIEVAGPNFKGRPIFNGVEDTPY--EDTSTPPYASSKLLAENIVLNANGAPLK-- 172
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
L TCA+RP IYG G L F + S +YV N+ A I
Sbjct: 173 QGGYLVTCALRPMYIYGEGSHFLTEIFDFLLTNNGWLFPRIKGSGVNPLVYVGNVAWAHI 232
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE-FIGPLLKTLDYDLPKSWLAVPHA 299
LA+ L Q GQ YF+SD P N++ F LLK L L SW VP
Sbjct: 233 LAAKAL------QVPDKAIRGQFYFISDDTPHNSYSDFNYELLKELGLRLKTSWWYVPLF 286
Query: 300 LFLGKVFSFFYSVLYPWLNRWWLPQPL---ILPAEVYKVGVTH---YFSLLKAKDELCYV 353
L +F + L ++ +L +P + V +T+ FS LKA+ Y+
Sbjct: 287 LL------YFLAFLLEIVS--FLLRPYVKYRPRYNRHAVALTNSMFTFSYLKAQRHFGYM 338
Query: 354 PIVSPREGMAATISY 368
P+ S E T +
Sbjct: 339 PLFSWEESKERTAKW 353
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 90/373 (24%), Positives = 143/373 (38%), Gaps = 68/373 (18%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
LVTGG G +GS L L+ G + VR D R LL V + D+ +
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAG-HDVRGLD-RLRDGLDPLLSG--VEFVVLDLTDRDL 56
Query: 72 VEKAARGV-DCVFHVAS-YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
V++ A+GV D V H+A+ + +VN++GT +++EA G++R V+ S+
Sbjct: 57 VDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+VV+G + +E L ++ YG SK AEQL+ L
Sbjct: 117 VSVVYGDPPPLPIDEDLGP---PRPLNPYGVSKLAAEQLLRAY-------ARLYGLPVVI 166
Query: 190 VRPAAIYGPGEERHLPRIVS------LAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS 243
+RP +YGPG++ L V L K + G+ S D++YVD++ AL+LA
Sbjct: 167 LRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLAL 226
Query: 244 MGLLDDIPGQKGRPIASGQPYFVSDG-FPINTFEFIGPLLKTLDYDLPKSWLAVPHALFL 302
G + + G I E + + + P
Sbjct: 227 EN-------------PDGGVFNIGSGTAEITVRELAEAVAEAVGSKAP------------ 261
Query: 303 GKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGM 362
V P R L + + KA+ L + P VS EG+
Sbjct: 262 -------LIVYIPLGRRGDLREGK-------------LLDISKARAALGWEPKVSLEEGL 301
Query: 363 AATISYWQDRKRK 375
A T+ + +
Sbjct: 302 ADTLEWLLKKLEL 314
|
Length = 314 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 5e-33
Identities = 93/358 (25%), Positives = 148/358 (41%), Gaps = 45/358 (12%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTG G +GS L L+ +G Y+VRA + LL V ++GD+ +
Sbjct: 2 LVTGATGFLGSNLVRALLAQG-YRVRALVRSGSDAV--LLDGLPVEVVEGDLTDAASLAA 58
Query: 75 AARGVDCVFHVAS-YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133
A +G D VFH+A+ + K + N+ GT +V++A LE G++R+V+ S+
Sbjct: 59 AMKGCDRVFHLAAFTSLWAK---DRKELYRTNVEGTRNVLDAALEAGVRRVVHTSSIA-A 114
Query: 134 FGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPA 193
GG +E+ P+ D Y RSK +AE VL++ + L V P+
Sbjct: 115 LGGPPDGRIDETTPWNERPFPND-YYRSKLLAELEVLEA--------AAEGLDVVIVNPS 165
Query: 194 AIYGPGEERHLP--RIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251
A++GPG+E V G +P T ++ V ++ I A
Sbjct: 166 AVFGPGDEGPTSTGLDVLDYLNGKLPAYPPG---GTSFVDVRDVAEGHIAAM-------- 214
Query: 252 GQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYS 311
+KGR G+ Y + +F+ + L + P P +L K + S
Sbjct: 215 -EKGRR---GERYILGG--ENLSFKQLFETLAEITGVKPPRRTIPP---WLLKAVAAL-S 264
Query: 312 VLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYW 369
L L PL+ P + + +S KA+ EL Y P E + T+ W
Sbjct: 265 ELKARLTG---KPPLLTPRTARVLRRNYLYSSDKARRELGYSP-RPLEEALRDTL-AW 317
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-26
Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 29/238 (12%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTGG G +GS L L++ G Y+V R S L + +GD+ +E+
Sbjct: 2 LVTGGTGFIGSHLVRRLLQEG-YEVIVLGRRRRS---ESLNTGRIRFHEGDLTDPDALER 57
Query: 75 AARGV--DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132
V D V H+A+ G N+ GT ++EA G++R V+ S+
Sbjct: 58 LLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVFASSSE- 116
Query: 133 VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL---KSNGRPFKKNNRKCLYTCA 189
V+G E P P+ Y +K AE+LV ++ G
Sbjct: 117 VYGDVADPPITEDTPLGPLSP----YAAAKLAAERLVEAYARAYGLRA----------VI 162
Query: 190 VRPAAIYGPGEERH-----LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242
+R +YGPG +P ++ G +G+ + + D++YVD++ A++LA
Sbjct: 163 LRLFNVYGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAILLA 220
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 78/303 (25%), Positives = 122/303 (40%), Gaps = 51/303 (16%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTG G +G AL +L+ RG A N+ S +L + ID
Sbjct: 3 LVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVL----------AELPDIDSFT 52
Query: 75 AA-RGVDCVFHVAS--YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
GVD V H+A+ + M+ + +VN T + A G++R V++S+
Sbjct: 53 DLFLGVDAVVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVKRFVFLSSVK 112
Query: 132 VVFGGKEIVNGNESLPYFPIDEH-----VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLY 186
VNG ++ P DE D+YGRSK AE+ +L+ + +
Sbjct: 113 --------VNGEGTVGA-PFDETDPPAPQDAYGRSKLEAERALLELG----ASDGME--- 156
Query: 187 TCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGL 246
+RP +YGPG + R++ L GL P G + + +DNLV A+ L
Sbjct: 157 VVILRPPMVYGPGVRGNFARLMRLIDRGL-PLPPGAVKNRRSLVSLDNLVDAIYL----C 211
Query: 247 LDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPL-----LKTLDYDLPKSWLAVPHALF 301
+ P A+ + VSDG P++T E + + T +P L L
Sbjct: 212 ISL-------PKAANGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAGLLRFAAKLL 264
Query: 302 LGK 304
+
Sbjct: 265 GKR 267
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-26
Identities = 59/232 (25%), Positives = 89/232 (38%), Gaps = 51/232 (21%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTGG G +GS L L+ RG ++V D
Sbjct: 2 LVTGGAGFIGSHLVRRLLERG-HEVVVIDRL----------------------------- 31
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
D V H+A+ E N+ GT +++EA + G++R VY S+ V+
Sbjct: 32 -----DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASS-ASVY 85
Query: 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194
G E + E P P+ YG SK AE L+ L +R A
Sbjct: 86 GSPEGLPEEEETPPRPL----SPYGVSKLAAEHLLRSY-------GESYGLPVVILRLAN 134
Query: 195 IYGPGEERH----LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242
+YGPG+ + + A G G + D+I+VD++V A++ A
Sbjct: 135 VYGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHA 186
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 75/269 (27%), Positives = 111/269 (41%), Gaps = 37/269 (13%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG---VHCIQGDVVSKID 71
LVTG G +GS L L+R G ++VRA D+ + LL N H I GDV +
Sbjct: 3 LVTGADGFIGSHLTERLLREG-HEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDASE 61
Query: 72 VEKAARGVDCVFHVA-----SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126
VE + D VFH+A Y + E N+ GT +V+EA +R+V+
Sbjct: 62 VEYLVKKCDVVFHLAALIAIPYSYTAPL-----SYVETNVFGTLNVLEAACVLYRKRVVH 116
Query: 127 VSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL---KSNGRPFKKNNRK 183
ST V+G + V +E P I++ Y SK A++L +S G P
Sbjct: 117 TSTSE-VYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVT----- 170
Query: 184 CLYTCAVRPAAIYGPG--EERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALIL 241
+RP YGP +P I+S +G +G+ S D+ +V + I
Sbjct: 171 -----IIRPFNTYGPRQSARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTARGFID 225
Query: 242 ASMGLLDDIPGQKGRPI--ASGQPYFVSD 268
D G I SG+ + +
Sbjct: 226 I-----LDAIEAVGEIINNGSGEEISIGN 249
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 6e-20
Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 28/238 (11%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
L+ GG G +GS L L+ G QVR FD L GV I+GD ++ D+E
Sbjct: 3 LIVGGNGFIGSHLVDALLEEG-PQVRVFDRSIPPY---ELPLGGVDYIKGDYENRADLES 58
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
A G+D V H+AS + N+ T ++EAC GI ++++ S+ V+
Sbjct: 59 ALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFASSGGTVY 118
Query: 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194
G E + +ES P PI SYG SK E+ + R ++ L +R +
Sbjct: 119 GVPEQLPISESDPTLPI----SSYGISKLAIEKYL-----RLYQY--LYGLDYTVLRISN 167
Query: 195 IYGPGEER---------HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS 243
YGPG+ L +I+ + + G+ D+IY+D+LV AL+
Sbjct: 168 PYGPGQRPDGKQGVIPIALNKILRGEPIEI----WGDGESIRDYIYIDDLVEALMALL 221
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 78/248 (31%), Positives = 116/248 (46%), Gaps = 44/248 (17%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKIDV 72
LVTGG G +GS L L+ RG ++V D L T + + V I+GD+ V
Sbjct: 2 VLVTGGAGFIGSHLVERLLERG-HEVIVLDNLSTGKKENLPEVKPNVKFIEGDIRDDELV 60
Query: 73 EKAARGVDCVFHVASYGMSGKEMLQFGRVD-EVNINGTCHVIEACLEFGIQRLVYVSTYN 131
E A GVD VFH A+ S ++ D EVN+ GT +++EA + G++R VY S+ +
Sbjct: 61 EFAFEGVDYVFHQAAQA-SVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRFVYASSSS 119
Query: 132 VVFGGKEIVNGNESLPYFPIDE----HVDS-YGRSKSVAEQLVLKSNGRPFKKNNRKCLY 186
V G+ PY P DE + S Y SK E + F + LY
Sbjct: 120 VY--------GDP--PYLPKDEDHPPNPLSPYAVSKYAGELYC-----QVFAR-----LY 159
Query: 187 ---TCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKI---GEPSVKTDWIYVDN 234
T ++R +YGP ++ + +P + A G P I GE + D+ YV++
Sbjct: 160 GLPTVSLRYFNVYGPRQDPNGGYAAVIPIFIERALKGE-PPTIYGDGEQT--RDFTYVED 216
Query: 235 LVLALILA 242
+V A +LA
Sbjct: 217 VVEANLLA 224
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 7e-19
Identities = 72/290 (24%), Positives = 110/290 (37%), Gaps = 49/290 (16%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG------VHCIQGDVV 67
VTGG G +G L L+ G ++V + +H I V ++GD+
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENG-FKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLT 59
Query: 68 ------SKIDVEKAARGVDCVFHVA-SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
S + A VD V H A SY NI+GT HV+E
Sbjct: 60 QPNLGLSAAASRELAGKVDHVIHCAASYDFQAPN----EDAWRTNIDGTEHVLELAARLD 115
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
IQR YVST V + + E+ + + Y +SK+ AEQLV + +
Sbjct: 116 IQRFHYVSTAYVAGNREGNI--RETELNPGQNFK-NPYEQSKAEAEQLVRAAATQ----- 167
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRI-------VSLAKLGLVPFKIGEPSVKTDWIYVD 233
+ RP+ + G + + +I LAKLG G + + + VD
Sbjct: 168 ----IPLTVYRPSIVVGDSKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVD 223
Query: 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLK 283
+ A++ S +P A+GQ + ++D P T I L K
Sbjct: 224 YVADAIVYLS-----------KKPEANGQIFHLTDPTPQ-TLREIADLFK 261
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 54/295 (18%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRT--NSPWS--HLLINHGVHCIQGDV 66
LVTGG G +GS L+ + Y++ D T + + + + ++GD+
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDI 60
Query: 67 VSKIDVEKAAR--GVDCVFHVA-------SYGMSGKEMLQFGRVDEVNINGTCHVIEACL 117
V++ +D V H A S + N+ GT ++EA
Sbjct: 61 CDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFI-------RTNVLGTYTLLEAAR 113
Query: 118 EFGIQRLVYVSTYNVVFGG-KEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRP 176
++G++R V++ST + V+G + E+ P P Y SK+ A+ LV ++ R
Sbjct: 114 KYGVKRFVHIST-DEVYGDLLDDGEFTETSPLAP----TSPYSASKAAADLLV-RAYHRT 167
Query: 177 FKKNNRKCLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKI-GEPSVKTDWIYVD 233
+ L R + YGP + E+ +P + A G P I G+ DW+YV+
Sbjct: 168 YG------LPVVITRCSNNYGPYQFPEKLIPLFILNALDGK-PLPIYGDGLNVRDWLYVE 220
Query: 234 NLVLAL--ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLD 286
+ A+ +L +KGR G+ Y + G + E + +L+ L
Sbjct: 221 DHARAIELVL-----------EKGRV---GEIYNIGGGNELTNLELVKLILELLG 261
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 37/242 (15%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS--PWSHL-----LINHGVHCIQGDVV 67
LVTG G +GS L LVR+G Y+VRAF + NS W L + + + GD+
Sbjct: 2 LVTGADGFIGSHLVEALVRQG-YEVRAF-VLYNSFNSWGWLDTSPPEVKDKIEVVTGDIR 59
Query: 68 SKIDVEKAARGVDCVFHVA-------SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
V KA +G D VFH+A SY ++ + + N+ GT +V++A + G
Sbjct: 60 DPDSVRKAMKGCDVVFHLAALIAIPYSY-IAPDSYV------DTNVTGTLNVLQAARDLG 112
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
++++V+ ST + V+G + V +E P Y SK A+QL L S R F
Sbjct: 113 VEKVVHTST-SEVYGTAQYVPIDEKHPLQG----QSPYSASKIGADQLAL-SFYRSFN-- 164
Query: 181 NRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238
+RP YGP + +P I++ G K+G S D+ YV + V
Sbjct: 165 ----TPVTIIRPFNTYGPRQSARAVIPTIITQIASGKRRIKLGSLSPTRDFNYVTDTVRG 220
Query: 239 LI 240
I
Sbjct: 221 FI 222
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-16
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
L+ G G +G AL EL+ +G ++V T V ++GD+ +
Sbjct: 2 LILGATGFIGRALARELLEQG-HEVTLLVRNTKRLSKEDQEP--VAVVEGDLRDLDSLSD 58
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
A +GVD V H+A ++ EV++ GT +V+EA E G++ +++S+
Sbjct: 59 AVQGVDVVIHLAGAPRDTRDFC------EVDVEGTRNVLEAAKEAGVKHFIFISSLGAY- 111
Query: 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194
++ E P P Y K+ E ++ +++ YT VRP
Sbjct: 112 --GDLHEETEPSPSSP-------YLAVKAKTEAVLREASLP----------YT-IVRPGV 151
Query: 195 IYG 197
IYG
Sbjct: 152 IYG 154
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 8e-16
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 33/180 (18%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQ 63
+GKT LVTGG G +GS L ++++ G ++ FD N + + I
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFII 60
Query: 64 GDVVSKIDVE--KAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121
GDV K + RG D VFH A+ + N+ GT +VI+A +E G+
Sbjct: 61 GDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIENGV 120
Query: 122 QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS---YGRSKSVAEQLVLKSNGRPFK 178
++ V +ST D+ V+ G +K VAE+L+L N
Sbjct: 121 EKFVCIST----------------------DKAVNPVNVMGATKRVAEKLLLAKNEYSSS 158
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 8e-16
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 14/161 (8%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTG G VGSA+ L+ +G +VR +R S +L V ++GD+ + K
Sbjct: 4 LVTGATGFVGSAVVRLLLEQG-EEVRVL-VRPTSDRRNL-EGLDVEIVEGDLRDPASLRK 60
Query: 75 AARGVDCVFHVAS----YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
A G +FHVA+ + +EM N+ GT +++ A LE G++R+VY S+
Sbjct: 61 AVAGCRALFHVAADYRLWAPDPEEMYA------ANVEGTRNLLRAALEAGVERVVYTSSV 114
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171
+ + +E+ P +D+ + Y RSK +AEQ L+
Sbjct: 115 ATLGVRGDGTPADETTP-SSLDDMIGHYKRSKFLAEQAALE 154
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 61/267 (22%), Positives = 97/267 (36%), Gaps = 65/267 (24%)
Query: 16 VTGGLGHVGSALCLELVRRGAYQ-----VRAFD-----------LRTNSPWSHLLINHGV 59
+TG G +G L +L+R VRA D L + L +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 60 HCIQGDV------VSKIDVEKAARGVDCVFHVA-------SYGMSGKEMLQFGRVDEVNI 106
+ GD+ +S D ++ A VD + H A Y ++ N+
Sbjct: 61 IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPY----SDLRA------TNV 110
Query: 107 NGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE------HVDSYGR 160
GT V+ + +VST G+ E DE + Y +
Sbjct: 111 LGTREVLRLAKQMKKLPFHHVST--AYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQ 168
Query: 161 SKSVAEQLVLK-SNGRPFKKNNRKCLYTCAVRPAAIYG---PGE---ERHLPR-IVSLAK 212
SK +AEQLV + + G P RP+ I G G + PR ++ A
Sbjct: 169 SKWLAEQLVREAAGGLP----------VVIYRPSIITGESRTGWINGDDFGPRGLLGGAG 218
Query: 213 LGLVPFKIGEPSVKTDWIYVDNLVLAL 239
LG++P +G+P + D + VD + A+
Sbjct: 219 LGVLPDILGDPDARLDLVPVDYVANAI 245
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 7e-15
Identities = 52/182 (28%), Positives = 69/182 (37%), Gaps = 32/182 (17%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV 72
LV G G VG + EL+ RG YQVRA +R S L G + GD+ +
Sbjct: 1 KVLVVGATGKVGRHVVRELLDRG-YQVRAL-VRDPSQAEKLEAA-GAEVVVGDLTDAESL 57
Query: 73 EKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132
A G+D V A G GK + VD G ++I+A + G++R V VS
Sbjct: 58 AAALEGIDAVISAA--GSGGKGGPRTEAVDYD---GNINLIDAAKKAGVKRFVLVS---S 109
Query: 133 VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRP 192
+ K PY +K AE + S G YT VRP
Sbjct: 110 IGADKPSHPLEALGPYL----------DAKRKAEDYLRAS-GLD---------YTI-VRP 148
Query: 193 AA 194
Sbjct: 149 GG 150
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKI 70
LVTGG G++GS +L++ G ++V D L + L+ +GD++ +
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSNGHKIA--LLKLQFKFYEGDLLDRA 57
Query: 71 DVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
+ +D V H A+ G+ + + + N+ GT ++IEA L+ G+++ ++ S
Sbjct: 58 LLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSS 117
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167
T V+G +E+ P PI + YGRSK ++E+
Sbjct: 118 T-AAVYGEPTTSPISETSPLAPI----NPYGRSKLMSEE 151
|
Length = 329 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 11/159 (6%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHC--IQGDVVSKID 71
LVTGG G++GS +L+ G ++V D L S + ++GD+ +
Sbjct: 3 LVTGGAGYIGSHTVRQLLESG-HEVVILDNLSNGSREALPRGERITPVTFVEGDLRDREL 61
Query: 72 VEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
+++ +D V H A G+ + + + N+ GT +++EA + G+++ ++ S+
Sbjct: 62 LDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIFSSS 121
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168
V+G + +E P PI + YGRSK ++EQ+
Sbjct: 122 -AAVYGEPSSIPISEDSPLGPI----NPYGRSKLMSEQI 155
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 5e-13
Identities = 70/324 (21%), Positives = 115/324 (35%), Gaps = 77/324 (23%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRT-NSPWSHLLINHGVHC-IQGDVVSKIDV 72
V G G +G + L +RG QV + ++ + G ++ D+ +
Sbjct: 4 TVFGATGFIGRYVVNRLAKRG-SQVIVPYRCEAYARRLLVMGDLGQVLFVEFDLRDDESI 62
Query: 73 EKAARGVDCVFHVASYGMSGKEMLQFGRV--DEVNINGTCHVIEACLEFGIQRLVYVSTY 130
KA G D V + G+ + + ++V++ G + +A E G++RL+++S
Sbjct: 63 RKALEGSDVV-----INLVGR-LYETKNFSFEDVHVEGPERLAKAAKEAGVERLIHISAL 116
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDS-YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
D + S Y RSK+ E+ V R+
Sbjct: 117 G-------------------ADANSPSKYLRSKAEGEEAV------------REAFPEAT 145
Query: 190 -VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLD 248
VRP+ ++G E+R L R L P IG K +YV ++ A+ A L
Sbjct: 146 IVRPSVVFGR-EDRFLNRFAKLLAFLPFPPLIGGGQTKFQPVYVGDVAEAIARA----LK 200
Query: 249 DIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLD------YDL---PKSWLAVPHA 299
D P G+ T+E +GP + TL L + L +P
Sbjct: 201 D-------PETEGK-----------TYELVGPKVYTLAELVELLRRLGGRKRRVLPLPLW 242
Query: 300 L-FLGKVFSFFYSVLYPWLNRWWL 322
L L + P L R L
Sbjct: 243 LARLIARVKLLLLLPEPPLTRDQL 266
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 16/161 (9%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--LINHGVHCIQGDVVSKIDV 72
LVTGG G++GS +EL+ G Y V D +N L + + +GD+ + +
Sbjct: 3 LVTGGAGYIGSHTVVELLEAG-YDVVVLDNLSNGHREALPRIEKIRIEFYEGDIRDRAAL 61
Query: 73 EK--AARGVDCVFHVASY---GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+K A +D V H A+ G S ++ L++ N+ GT +++EA G++ V+
Sbjct: 62 DKVFAEHKIDAVIHFAALKAVGESVQKPLKYYD---NNVVGTLNLLEAMRAHGVKNFVFS 118
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168
S+ V+G E V E P P + YGR+K + EQ+
Sbjct: 119 SS-AAVYGEPETVPITEEAPLNPT----NPYGRTKLMVEQI 154
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 58/226 (25%), Positives = 83/226 (36%), Gaps = 60/226 (26%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFD------LRTNSPWSHLLINH-GVHCIQG 64
L+TGG G +GS L +++G ++V FD N W GV + G
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQG-WEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHG 59
Query: 65 DVVSKIDVEKAARGVDCVFHVA-------SYGMSGKEMLQFGRVD-EVNINGTCHVIEAC 116
D+ ++ D+E +D + H A S R+D E N GT +V+EA
Sbjct: 60 DIRNRNDLEDLFEDIDLIIHTAAQPSVTTSASSP--------RLDFETNALGTLNVLEAA 111
Query: 117 LEFGIQ-RLVYVSTYNVVFGGKEIVNGNESLPY----------------------FPIDE 153
+ ++ ST N V+G LP FP+D
Sbjct: 112 RQHAPNAPFIFTST-NKVYGDLP-----NYLPLEELETRYELAPEGWSPAGISESFPLDF 165
Query: 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199
YG SK A+Q V + GR F L T R + GP
Sbjct: 166 SHSLYGASKGAADQYVQEY-GRIFG------LKTVVFRCGCLTGPR 204
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 53/240 (22%), Positives = 83/240 (34%), Gaps = 24/240 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK-IDVE 73
LVTG G +G L L + +V D V ++ D+
Sbjct: 2 LVTGAAGGLGRLLARRL--AASPRVIGVDGLDRRRPP--GSPPKVEYVRLDIRDPAAADV 57
Query: 74 KAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133
R D V H+A ++ +N++GT +V++AC G+ R+V S+ V
Sbjct: 58 FREREADAVVHLAFILDPPRDG---AERHRINVDGTQNVLDACAAAGVPRVVVTSSVAVY 114
Query: 134 -FGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRP 192
E P E +Y R K+ EQL+ + R L +RP
Sbjct: 115 GAHPDNPAPLTEDAPLRGSPEF--AYSRDKAEVEQLLAEFRRR------HPELNVTVLRP 166
Query: 193 AAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPG 252
A I GPG G +++ D++ AL+LA + G
Sbjct: 167 ATILGPGTR----NTTRDFLSPRRLPVPGGFDPPFQFLHEDDVARALVLA---VRAGATG 219
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73
LV G G G ++ L++ ++VRA +SP + L GV +QGD+ +E
Sbjct: 1 ILVFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAAKALAAPGVEVVQGDLDDPESLE 60
Query: 74 KAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
A +GV VF V + +G E DE+ G +V++A G+Q V+ S
Sbjct: 61 AALKGVYGVFLVTDFWEAGGE-------DEIAQ-GK-NVVDAAKRAGVQHFVFSS 106
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 45/198 (22%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---------GV 59
+ GKT LVTGG G +GS LC ++++ ++ F + LI+ +
Sbjct: 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFS---RDEYKLYLIDMELREKFPELKL 304
Query: 60 HCIQGDVVSKIDVEKAARG--VDCVFHVASYGMSGKE--MLQFGRVDEV--NINGTCHVI 113
GDV + VE+A G VD VFH A+ K ++++ + + N+ GT +V
Sbjct: 305 RFYIGDVRDRDRVERAMEGHKVDIVFHAAAL----KHVPLVEYNPEEAIKTNVLGTENVA 360
Query: 114 EACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSN 173
EA ++ G+++ V +ST V P + G +K +AE+L +N
Sbjct: 361 EAAIKNGVKKFVLISTDKAVN------------P-------TNVMGATKRLAEKLFQAAN 401
Query: 174 GRPFKKNNRKCLYTCAVR 191
+ + C VR
Sbjct: 402 RNV---SGTGTRF-CVVR 415
|
Length = 588 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 43/278 (15%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLR--TNSP-----WSHLLINHGVHCIQGDVV 67
LVTG G + S + +L++ G Y+VR +R + S N + + D +
Sbjct: 3 LVTGATGFIASHIVEQLLKAG-YKVRG-TVRSLSKSAKLKALLKAAGYNDRLEFVIVDDL 60
Query: 68 SKIDV-EKAARGVDCVFHVAS-YGMSGKEMLQFGRVDEV---NINGTCHVIEACLEFG-I 121
+ + ++A +GVD V HVAS + +G + D+V + GT +V+EA G +
Sbjct: 61 TAPNAWDEALKGVDYVIHVASPFPFTGPD-----AEDDVIDPAVEGTLNVLEAAKAAGSV 115
Query: 122 QRLVYVSTYNVVFGGKEIVNGNE------SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGR 175
+R+V S+ V G + +D+Y SK++AE+
Sbjct: 116 KRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEK-----AAW 170
Query: 176 PFKKNNRKCLYTCAVRPAAIYGP-GEERHLP----RIVSLAKLGLVPFKIGEPSVKTDWI 230
F K N+ + P + GP L I L G +P P++ ++
Sbjct: 171 EFVKENKPKFELITINPGYVLGPSLLADELNSSNELINKLL-DGKLPAIP--PNLPFGYV 227
Query: 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSD 268
V ++ A + A L + R I S P+ +
Sbjct: 228 DVRDVADAHVRA---LESPEAAGQ-RFIVSAGPFSFQE 261
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 43/187 (22%), Positives = 66/187 (35%), Gaps = 37/187 (19%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
V G G G L EL+ RG +QV A R S + +Q D+ D+ +
Sbjct: 2 AVIGATGKTGRRLVKELLARG-HQVTAL-SRNPSKAPAPGVTP----VQKDLFDLADLAE 55
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
A GVD V + ++ H+++A G++R+V VS
Sbjct: 56 ALAGVDAVVDAFGARPDDSDGVK-------------HLLDAAARAGVRRIVVVSA----- 97
Query: 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194
G Y R+K+ AE+L+ S G + VRP A
Sbjct: 98 AGLYRD--EPGTFRLDDAPLFPPYARAKAAAEELLRAS-GLDW----------TIVRPGA 144
Query: 195 IYGPGEE 201
++ E
Sbjct: 145 LFDEEGE 151
|
Length = 182 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVS 68
LVTGG G +GS LC ++++ ++ F + + + GDV
Sbjct: 2 LVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQELRQEYNDPKLRFFIGDVRD 61
Query: 69 KIDVEKA--ARGVDCVFHVASYGMSGKE--MLQFGRVDEV--NINGTCHVIEACLEFGIQ 122
+ +E+A GVD VFH A+ K ++++ ++ + N+ GT +V EA +E G++
Sbjct: 62 RERLERAMEQHGVDTVFHAAAL----KHVPLVEYNPMEAIKTNVLGTENVAEAAIENGVE 117
Query: 123 RLVYVST 129
+ V +ST
Sbjct: 118 KFVLIST 124
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 28/246 (11%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+ LVTG G +GS L L G Y VR D ++ + + H D+ +
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHY-VRGADWKSPEHMTQPTDDDEFH--LVDLREMEN 57
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTC--HVIEACLEFGIQRLVYVST 129
KA GVD VFH+A+ M G +Q + N +++EA G++R ++ S+
Sbjct: 58 CLKATEGVDHVFHLAA-DMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASS 116
Query: 130 YNVVFGGKEIVNGNESL---PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLY 186
V K++ L +P + D+YG K E+L N +
Sbjct: 117 ACVYPEFKQLETTVVRLREEDAWPAEPQ-DAYGWEKLATERLCQHY-------NEDYGIE 168
Query: 187 TCAVRPAAIYGPGEERH---------LPRIVSLAKLGLVPFKI-GEPSVKTDWIYVDNLV 236
T VR IYGP + R V+ AK G F+I G+ + Y+D+ V
Sbjct: 169 TRIVRFHNIYGPRGTWDGGREKAPAAMCRKVATAKDG-DRFEIWGDGLQTRSFTYIDDCV 227
Query: 237 LALILA 242
L
Sbjct: 228 EGLRRL 233
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH----------GV 59
G+T LVTGG G++GS L+L+ G Y+V D NS S + +
Sbjct: 4 MGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNS--SEEALRRVKELAGDLGDNL 60
Query: 60 HCIQGDVVSKIDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACL 117
+ D+ K +EK A+ D V H A G+ + + + N+ GT +++E
Sbjct: 61 VFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMA 120
Query: 118 EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168
+ G ++LV+ S+ V+G E V E P + YGR+K E++
Sbjct: 121 KHGCKKLVFSSS-ATVYGQPEEVPCTEEFPLSAT----NPYGRTKLFIEEI 166
|
Length = 352 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 72/308 (23%), Positives = 122/308 (39%), Gaps = 68/308 (22%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRT---NSPWSHLLINHG-VHCIQGDV 66
LVTGG G +GS ++ + V D T N + + +QGD+
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDI 60
Query: 67 VSKIDVEKAARG--VDCVFHVA--SYGMSGKEMLQFGRVD----------EVNINGTCHV 112
+ V++ + D V H A S+ VD + N+ GT +
Sbjct: 61 CDRELVDRLFKEYQPDAVVHFAAESH------------VDRSIDGPAPFIQTNVVGTYTL 108
Query: 113 IEACLEFGIQ-RLVYVSTYNVVFG--GKEIVNGNESLPYFPIDEHVDS-YGRSKSVAEQL 168
+EA ++ + R ++ST + V+G G + E+ PY P S Y SK+ ++ L
Sbjct: 109 LEAARKYWGKFRFHHIST-DEVYGDLGLDDDAFTETTPYNP-----SSPYSASKAASDLL 162
Query: 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGP--GEERHLPRIVSLAKLGLVPFKI-GEPSV 225
V ++ R + L R + YGP E+ +P ++ A LG P + G+
Sbjct: 163 V-RAYVRTYG------LPATITRCSNNYGPYQFPEKLIPLMIINALLGK-PLPVYGDGLQ 214
Query: 226 KTDWIYVDNLVLAL--ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLK 283
DW+YV++ A+ +L KG+ G+ Y + G E + + +
Sbjct: 215 IRDWLYVEDHCRAIDLVL-----------TKGKI---GETYNIGGGNERTNLEVVKTICE 260
Query: 284 TLDYDLPK 291
L D P
Sbjct: 261 LLGKDKPD 268
|
Length = 340 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 20/185 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73
L+TG G VG L L+ ++ D+ + S V I GD+ +E
Sbjct: 4 LITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPR---VTQIAGDLAVPALIE 60
Query: 74 KAARGV-DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYN 131
A G D VFH+A+ +SG F VN++GT +++EA + G R V+ S+
Sbjct: 61 ALANGRPDVVFHLAAI-VSGGAEADFDLGYRVNVDGTRNLLEALRKNGPKPRFVFTSSL- 118
Query: 132 VVFGGKEIVNGNESLPYF-PIDEHVD---SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYT 187
V+G LP +D SYG K++ E L+ + R F L T
Sbjct: 119 AVYGL--------PLPNPVTDHTALDPASSYGAQKAMCELLLNDYSRRGFVDGRTLRLPT 170
Query: 188 CAVRP 192
VRP
Sbjct: 171 VCVRP 175
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 16 VTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW---SHLLINHG----VHCIQGDVVS 68
VTG G +GS L L++RG Y VRA +R +HLL G + + D++
Sbjct: 3 VTGASGFIGSWLVKRLLQRG-YTVRA-TVRDPGDEKKVAHLLELEGAKERLKLFKADLLD 60
Query: 69 KIDVEKAARGVDCVFHVAS----YGMSG-KEMLQFGRVDEVNINGTCHVIEACLEFG-IQ 122
+ A G D VFHVAS +EM+ E + GT +V+EAC + ++
Sbjct: 61 YGSFDAAIDGCDGVFHVASPVDFDSEDPEEEMI------EPAVKGTLNVLEACAKAKSVK 114
Query: 123 RLVYVSTYNVVFGGKEIVNGNESLPYFPIDE-----------HVDSYGRSKSVAEQ 167
R+V+ S+ V + N N +DE Y SK++AE+
Sbjct: 115 RVVFTSSVAAV-----VWNPNRG-EGKVVDESCWSDLDFCKKTKLWYALSKTLAEK 164
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L L ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ L++
Sbjct: 63 ALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFS 122
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
S+ V+G + + ES FP YG+SK + EQ++
Sbjct: 123 SS-ATVYGDQPKIPYVES---FPTGTPQSPYGKSKLMVEQIL 160
|
Length = 338 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFD---LRTNSPWSHLLINHGVHCIQGDVVSKI 70
LVTGG G +GS L L+ G +V D N ++ D++
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEG-NEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDTA 60
Query: 71 DVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
D + A + D VFH+A+ E N+ T +V+EA G++R+V+ S+
Sbjct: 61 D-KVAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASS- 118
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
+ V+G +++ E P PI YG SK AE L+
Sbjct: 119 STVYGEAKVIPTPEDYPPLPI----SVYGASKLAAEALI 153
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 69/272 (25%), Positives = 106/272 (38%), Gaps = 58/272 (21%)
Query: 19 GLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG 78
G G++G L +L+ +G +QV + GV + D+ +
Sbjct: 5 GCGYLGQRLARQLLAQG-WQVTG--TTRSPEKLAADRPAGVTPLAADLTQPGLLADVDHL 61
Query: 79 VDCVFHVA-SYGMSGKEMLQFGRVDEVNINGTCHVIEACLE--FGIQRLVYVSTYNVVFG 135
V + A SY L+ +++A L +QR++Y+S+ V +G
Sbjct: 62 VISLPPPAGSYRGGYDPGLR-------------ALLDA-LAQLPAVQRVIYLSSTGV-YG 106
Query: 136 GK--EIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPA 193
+ E V+ E+ P P E GR+ AEQ +L +P T +R A
Sbjct: 107 DQQGEWVD--ETSPPNPSTES----GRALLEAEQALLALGSKP----------TTILRLA 150
Query: 194 AIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQ 253
IYGPG RH + LA+ P + T+ I+VD+LV AL A Q
Sbjct: 151 GIYGPG--RH--PLRRLAQGTGRP---PAGNAPTNRIHVDDLVGALAFA---------LQ 194
Query: 254 KGRPIASGQPYFVSDGFPINTFEFIGPLLKTL 285
+ P G Y V D P+ EF + L
Sbjct: 195 RPAP---GPVYNVVDDLPVTRGEFYQAAAELL 223
|
Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 68/289 (23%), Positives = 121/289 (41%), Gaps = 39/289 (13%)
Query: 13 TFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRT---NSPWSHLLINHGVHC-IQGDVV 67
LVTGG G +GS ++ +V D T N L ++ + ++GD+
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIG 60
Query: 68 SKIDVEKAAR--GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RL 124
+ V + D V H A+ + + E N+ GT ++EA ++ + R
Sbjct: 61 DRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRF 120
Query: 125 VYVSTYNVVFGGKEIVNGN---ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNN 181
++ST + V+G ++ G+ E+ P P Y SK+ ++ LV + R +
Sbjct: 121 HHIST-DEVYG--DLEKGDAFTETTPLAP----SSPYSASKAASDHLVR-AYHRTYG--- 169
Query: 182 RKCLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLAL 239
L R + YGP + E+ +P +++ A G G+ DW+YV++ A+
Sbjct: 170 ---LPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAI 226
Query: 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYD 288
L +L+ KGR G+ Y + G E + +L+ L D
Sbjct: 227 YL----VLE-----KGRV---GETYNIGGGNERTNLEVVETILELLGKD 263
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 64/284 (22%), Positives = 102/284 (35%), Gaps = 72/284 (25%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
L+ GG +G AL EL+ G + V F+ R + + GV I GD +
Sbjct: 1 MKILIIGGTRFIGKALVEELLAAG-HDVTVFN-RGRTK---PDLPEGVEHIVGDRNDRDA 55
Query: 72 VEKAA--RGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVY 126
+E+ D V +Y T +E L+ +++ ++
Sbjct: 56 LEELLGGEDFDVVVDTIAY--------------------TPRQVERALDAFKGRVKQYIF 95
Query: 127 VSTYNVVFGGKEIVNGNESLP----YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNR 182
+S+ +V K ES P YGR K AE +++++ P
Sbjct: 96 ISSASVY--LKPGRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEAAAFP------ 147
Query: 183 KCLYTCAVRPAAIYGPG-----EERHLPRIVSLAKLG---LVPFKIGEPSVKTDWIYVDN 234
YT VRP IYGPG R+ G LVP G+ +I+V +
Sbjct: 148 ---YT-IVRPPYIYGPGDYTGRLAYFFDRL----ARGRPILVP---GDGHSLVQFIHVKD 196
Query: 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFI 278
L AL+ A+ G P A G + ++ + E +
Sbjct: 197 LARALLGAA-----------GNPKAIGGIFNITGDEAVTWDELL 229
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 34/173 (19%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW--SHLLINHGVHCIQGDVVSK 69
K L+TGG G +GS LC L+ G + + T HL+ + I+ DV
Sbjct: 1 KRILITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTEP 60
Query: 70 IDVEKAARGVDCVFHVAS------YGMSGKEMLQFGRVD--EVNINGTCHVIEACLEFGI 121
+ +E VD ++H+A Y Q+ + + N+ GT +++ G
Sbjct: 61 LYLE-----VDQIYHLACPASPVHY--------QYNPIKTLKTNVLGTLNMLGLAKRVG- 106
Query: 122 QRLVYVSTYNVVFGGKEIVNGNESLPYF----PIDEHVDS-YGRSKSVAEQLV 169
R++ ST + V+G E+ ES Y+ PI S Y K VAE L
Sbjct: 107 ARVLLAST-SEVYGDPEVHPQPES--YWGNVNPIG--PRSCYDEGKRVAETLC 154
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 31/241 (12%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQ---GDV 66
+GK LVTG G GS L L L GA +V + L + + + + + I GD+
Sbjct: 3 QGKRVLVTGHTGFKGSWLSLWLQELGA-KVIGYSLDPPTNPNLFELANLDNKISSTRGDI 61
Query: 67 VSKIDVEKAARGV--DCVFHVASYGM---SGKEMLQ-FGRVDEVNINGTCHVIEACLEFG 120
+ +A R + VFH+A+ + S K+ ++ F E N+ GT +++EA E G
Sbjct: 62 RDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETF----ETNVMGTVNLLEAIRETG 117
Query: 121 IQRLVYVSTYNVVFGGKEIVNG---NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPF 177
+ V T + + KE G N+ P+ H D Y SK AE L++ S F
Sbjct: 118 SVKAVVNVTSDKCYENKEWGWGYREND-----PLGGH-DPYSSSKGCAE-LIISSYRNSF 170
Query: 178 ---KKNNRKCLYTCAVRPAAIYGPG---EERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231
+ + + + R + G G E+R +P + A I P+ W +
Sbjct: 171 FNPENYGKHGIAIASARAGNVIGGGDWAEDRIVPDCIR-AFEAGERVIIRNPNAIRPWQH 229
Query: 232 V 232
V
Sbjct: 230 V 230
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 60/255 (23%), Positives = 93/255 (36%), Gaps = 61/255 (23%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKID 71
+VTGG G +GS L L RG + D L + +L V D + K D
Sbjct: 1 MIIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNL-----VGLKIADYIDKDD 55
Query: 72 VEKAARG------VDCVFHVASYG----MSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121
+ R ++ +FH + GK M+ + N T ++ CLE I
Sbjct: 56 FKDWVRKGDENFKIEAIFHQGACSDTTETDGKYMM------DNNYQYTKELLHYCLEKKI 109
Query: 122 QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH-----VDSYGRSKSVAEQLVLKSNGRP 176
R +Y S+ V GN SL + E ++ YG SK + +Q +
Sbjct: 110 -RFIYASSAAVY--------GNGSLGFAEDIETPNLRPLNVYGYSKLLFDQWARRHGKEV 160
Query: 177 FKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLA-------------KL--GLVPFKIG 221
+ +R +YGP E H R+ S+ KL + G
Sbjct: 161 LSQVV-------GLRYFNVYGP-REYHKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADG 212
Query: 222 EPSVKTDWIYVDNLV 236
E D++YV ++V
Sbjct: 213 EQ--LRDFVYVKDVV 225
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 68/275 (24%), Positives = 105/275 (38%), Gaps = 60/275 (21%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHG-VHCIQGDVVSK 69
L+TG G GS L L+ +G Y+V R++S + HL IN + GD+
Sbjct: 3 LITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTDRIDHLYINKDRITLHYGDLTDS 61
Query: 70 IDVEKAARGV--DCVFHVA--SY-GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
+ +A V D ++H+A S+ +S + EVN GT +++EA G+
Sbjct: 62 SSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTA---EVNAVGTLNLLEAIRILGLDAR 118
Query: 125 VYVSTYNVVFGGKEIVNGNESLPYFPIDEH-----VDSYGRSKSVAEQLVL---KSNGRP 176
Y ++ + +G + P E Y SK A+ + ++ G
Sbjct: 119 FYQASSSEEYG---------KVQELPQSETTPFRPRSPYAVSKLYADWITRNYREAYG-- 167
Query: 177 FKKNNRKCLYTCAVRPAAIYGPGE-----ERHLPRIVSLAKLGLVP-FKIGEPSVKTDWI 230
L+ R GP R + R V+ K GL P K+G K DW
Sbjct: 168 --------LFAVNGRLFNHEGPRRGETFVTRKITRQVARIKAGLQPVLKLGNLDAKRDWG 219
Query: 231 YVDNLVLALILASMGLLDDIPGQKGRP----IASG 261
+ V A L Q+G P IA+G
Sbjct: 220 DARDYVEAYWLLL---------QQGEPDDYVIATG 245
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 17/142 (11%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI----N 56
M L E T+ VTG G++GS L L++RG Y V A LR + HLL
Sbjct: 1 MELEGRES-ATGTYCVTGATGYIGSWLVKLLLQRG-YTVHA-TLRDPAKSLHLLSKWKEG 57
Query: 57 HGVHCIQGDVVSKIDVEKAARGVDCVFHVAS---YGMSG-----KEMLQFGRVDEVNING 108
+ + D+ + ++A +G D VFHVA+ + +S +E +Q +V + I G
Sbjct: 58 DRLRLFRADLQEEGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQ-SKVIDPAIKG 116
Query: 109 TCHVIEACLEFG-IQRLVYVST 129
T +V+++CL+ ++R+V+ S+
Sbjct: 117 TLNVLKSCLKSKTVKRVVFTSS 138
|
Length = 353 |
| >gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 58/207 (28%), Positives = 88/207 (42%), Gaps = 32/207 (15%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSHLLINHG----VHCIQ 63
EGK VTG G++ S L L++RG Y V+A N P HLL G +H +
Sbjct: 3 EGKVVCVTGASGYIASWLVKLLLQRG-YTVKATVRDPNDPKKTEHLLALDGAKERLHLFK 61
Query: 64 GDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQ 122
+++ + + G + VFH AS Q +D + GT +V+ +C + ++
Sbjct: 62 ANLLEEGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPA-VKGTLNVLRSCAKVPSVK 120
Query: 123 RLVYVSTYNVVFGGKEIVNGNESLPYFPIDE--HVDS---------YGRSKSVAEQLVLK 171
R+V S+ V NG P +DE D Y SK++AE+ K
Sbjct: 121 RVVVTSSMAAV-----AYNGKPLTPDVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWK 175
Query: 172 SNGRPFKKNNRKCLYTCAVRPAAIYGP 198
F K N + T + PA + GP
Sbjct: 176 -----FAKENGIDMVT--INPAMVIGP 195
|
Length = 322 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 56/225 (24%), Positives = 82/225 (36%), Gaps = 49/225 (21%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDV-------- 66
LVTG G V S + +L+ RG Y+VRA +R S D+
Sbjct: 2 LVTGASGFVASHVVEQLLERG-YKVRAT-VRDPS-------KVKKVNHLLDLDAKPGRLE 52
Query: 67 ------VSKIDVEKAARGVDCVFHVAS-YGMSGKEMLQFGRVDEV---NINGTCHVIEAC 116
+ ++ +G VFHVA+ S K+ +EV I GT + ++A
Sbjct: 53 LAVADLTDEQSFDEVIKGCAGVFHVATPVSFSSKD------PNEVIKPAIGGTLNALKAA 106
Query: 117 LEFG-IQRLVYVSTYNVVFGGKEIVNG------NESLPYFPIDEHVDS--YGRSKSVAEQ 167
++R V S+ V K V G + +L F D + Y SK++AE+
Sbjct: 107 AAAKSVKRFVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEK 166
Query: 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAK 212
K F N L T V P G + P A
Sbjct: 167 AAWK-----FADENNIDLIT--VIPTLTIGTIFDSETPSSSGWAM 204
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 60/294 (20%), Positives = 110/294 (37%), Gaps = 79/294 (26%)
Query: 12 KTFLVTGGLGHVGSALCLELVR------------RG----AYQVRAFDLRTNSPWSHL-- 53
K+ L+TG G +G L +L+R RG + + R +L + +
Sbjct: 1 KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60
Query: 54 ---LINHGVHCIQGDVV------SKIDVEKAARGVDCVFHVASYGMSGKEMLQFG-RVDE 103
L + I+GD+ S D++ V+ + H A+ + F R+DE
Sbjct: 61 LNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCAA-------TVTFDERLDE 113
Query: 104 ---VNINGTCHVIEACLEF-GIQRLVYVST--------------YNVVFGGKEIVNGNES 145
+N+ GT ++E ++ V+VST Y +++++ E
Sbjct: 114 ALSINVLGTLRLLELAKRCKKLKAFVHVSTAYVNGDRQLIEEKVYPPPADPEKLIDILEL 173
Query: 146 L--------PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYG 197
+ + H ++Y +K++AE+LVLK R L VRP+ +
Sbjct: 174 MDDLELERATPKLLGGHPNTYTFTKALAERLVLK---------ERGNLPLVIVRPSIVGA 224
Query: 198 PGEE---------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242
+E + G++ +P+ D I VD + AL+ A
Sbjct: 225 TLKEPFPGWIDNFNGPDGLFLAYGKGILRTMNADPNAVADIIPVDVVANALLAA 278
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 42/174 (24%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG------VHCIQGDVV 67
L+TG G +G AL L RG Y+V R+ + L + + + DV+
Sbjct: 2 ILITGATGMLGRALVRLLKERG-YEVIGTG-RSRASLFKLDLTDPDAVEEAIRDYKPDVI 59
Query: 68 SKIDVEKAA-RGVDCV--FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
+ AA VD +Y VN+ ++ A E G RL
Sbjct: 60 ----INCAAYTRVDKCESDPELAY--------------RVNVLAPENLARAAKEVGA-RL 100
Query: 125 VYVST-YNVVFGGKEIVNGNESLPYFPIDEH--VDSYGRSKSVAEQLVLKSNGR 175
+++ST Y VF GK+ PY D ++ YG+SK + E VL +N R
Sbjct: 101 IHISTDY--VFDGKKG-------PYKEEDAPNPLNVYGKSKLLGEVAVLNANPR 145
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI----NHG--VHCIQGD 65
T L+TGG G +G AL L GA + R +P + L+ G V D
Sbjct: 1 GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAEVTVAACD 60
Query: 66 V-----VSKI--DVEKAARGVDCVFHVASYGMSGKEML------QFGRVDEVNINGTCHV 112
V ++ + + A +D V H A G+ L +F RV + G ++
Sbjct: 61 VADRDALAALLAALPAALGPLDGVVHNA--GVLDDGPLEELTPERFERVLAPKVTGAWNL 118
Query: 113 IEACLEFGIQRLVYVSTYNVVFGG 136
E + + V S+ V G
Sbjct: 119 HELTRDLDLGAFVLFSSVAGVLGS 142
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 3e-06
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF--DLRTNSPWSHLLINHGVHCIQGDVV 67
+ K L+TGG G G+A+ + ++R F D + N + GDV
Sbjct: 3 KDKILLITGGTGSFGNAVLRRFLDTDIKEIRIFSRDEKKQDDMRKKYNNSKLKFYIGDVR 62
Query: 68 SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEV--NINGTCHVIEACLEFGIQRLV 125
+ A RGVD ++H A+ + +F ++ V N+ GT +V+EA + G++R+V
Sbjct: 63 DYRSILNATRGVDFIYHAAA--LKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVV 120
Query: 126 YVSTYNVVF 134
+ST V+
Sbjct: 121 CLSTDKAVY 129
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 62/270 (22%), Positives = 95/270 (35%), Gaps = 44/270 (16%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV 72
T V G G +G + EL RRG + VR + S S L GV + D + V
Sbjct: 1 TAHVLGASGPIGREVARELRRRG-WDVRLV---SRSG-SKLAWLPGVEIVAADAMDASSV 55
Query: 73 EKAARGVDCVFHVA--SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST- 129
AARG D ++H A +Y + +V+ A G +LV
Sbjct: 56 IAAARGADVIYHCANPAYTRWEELFPPLME----------NVVAAAEANG-AKLVLPGNV 104
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
Y +G + E P+ P GR ++ E+ +L + + + +
Sbjct: 105 YM--YGPQAGSPITEDTPFQPTTRK----GRIRAEMEERLLAA-------HAKGDIRALI 151
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFK-IGEPSVKTDWIYVDNLVLALILASMGLLD 248
VR YGPG A L G +W Y+ ++ AL+ L +
Sbjct: 152 VRAPDFYGPGAINSWLGAALFAILQGKTAVFPGNLDTPHEWTYLPDVARALVT----LAE 207
Query: 249 DIPGQKGRPIASGQPYFVSDGFPINTFEFI 278
P A G+ + + I T E I
Sbjct: 208 -------EPDAFGEAWHLPGAGAITTRELI 230
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 54/214 (25%), Positives = 77/214 (35%), Gaps = 65/214 (30%)
Query: 15 LVTGGLGHVGSALCLELVRRG----AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI 70
LVTG G +G L L RG A DL T+ L+ + DVV
Sbjct: 2 LVTGANGQLGRELTRLLAERGVEVVALDRPELDL-TDPEAVAALVRE----ARPDVV--- 53
Query: 71 DVEKAARGVDCVFHVASYGMSGKEMLQFGRVDE----------VNINGTCHVIEACLEFG 120
V+ + A VD+ VN G ++ EAC G
Sbjct: 54 --------VNAAAYTA--------------VDKAESEPELAYAVNALGPGNLAEACAARG 91
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH--VDSYGRSKSVAEQLVLKSNGRPFK 178
L+++ST V F +G + PY D ++ YGR+K EQ VL +N R
Sbjct: 92 A-PLIHISTDYV-F------DGAKGGPYREDDPTGPLNVYGRTKLAGEQAVLAANPR--- 140
Query: 179 KNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAK 212
+R A +YG + ++ LA
Sbjct: 141 --------HLILRTAWVYGEYGNNFVKTMLRLAA 166
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-06
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 20/141 (14%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQV------RAFDLRTNSPWSHLLINHGVHCI 62
+ GK LVTG +G A+ L R GA V + +
Sbjct: 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAV 62
Query: 63 QGDVVSKID-----VEKAAR---GVDCVFHVASYGMSGKEML-----QFGRVDEVNINGT 109
DV + V A +D + + A + + RV +VN+ G
Sbjct: 63 AADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGA 122
Query: 110 CHVIEACLEFGI-QRLVYVST 129
+ A L QR+V +S+
Sbjct: 123 FLLTRAALPLMKKQRIVNISS 143
|
Length = 251 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTG G +G+A+ L+ + A V A +R + GV QGD +E+
Sbjct: 2 LVTGATGKLGTAVVELLLAKVA-SVVAL-VRNPEK-AKAFAADGVEVRQGDYDDPETLER 58
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
A GVD + ++ + R+ + + I+A + G++ +VY+S
Sbjct: 59 AFEGVDRLLLISPSDL-------EDRIQQH-----KNFIDAAKQAGVKHIVYLSASG 103
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 56/242 (23%), Positives = 91/242 (37%), Gaps = 52/242 (21%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQ----VRAFD-------LRTNSP----WSHLLIN 56
+ L+TG G +G+ L LEL+ R + VRA L W L +
Sbjct: 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSAD 60
Query: 57 HGVHCIQGDV------VSKIDVEKAARGVDCVFHVASYGMSGKE---MLQFGRVDEVNIN 107
V + GD+ +S+ ++ A VD + H + + + + N+
Sbjct: 61 R-VEVVAGDLAEPDLGLSERTWQELAENVDLIIH------NAALVNHVFPYSELRGANVL 113
Query: 108 GTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNG----NESLPYFPIDEHVDS-YGRSK 162
GT V+ + L YVS+ +V + N +E P + + + YGRSK
Sbjct: 114 GTAEVLRLAATGKPKPLHYVSSISV-GETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSK 172
Query: 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE--ERHLPRIV-----SLAKLGL 215
VAE+LV ++ R L RP I G + + L +LG+
Sbjct: 173 WVAEKLVREAGDRG--------LPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGI 224
Query: 216 VP 217
P
Sbjct: 225 AP 226
|
Length = 382 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 49/190 (25%), Positives = 72/190 (37%), Gaps = 35/190 (18%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQ-----VRAFD-------LRTNSPWSHL----LIN 56
T L+TG G +G+ L EL+RR VRA LR L L
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWHEDLAR 60
Query: 57 HGVHCIQGDV------VSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDE---VNIN 107
+ + GD+ +S + E+ A VD + H +G + E N+
Sbjct: 61 ERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVH------NGALVNWVYPYSELRGANVL 114
Query: 108 GTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLP--YFPIDEHVDSYGRSKSVA 165
GT V+ + L YVST +V ++ E P Y +SK VA
Sbjct: 115 GTREVLRLAASGRAKPLHYVSTISVGAAI-DLSTVTEDDATVTPPPGLA-GGYAQSKWVA 172
Query: 166 EQLVLKSNGR 175
E LV +++ R
Sbjct: 173 ELLVREASDR 182
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 104 VNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH--VDSYGRS 161
VN G ++ A E G RLV++ST VF +G + PY D ++ YGRS
Sbjct: 76 VNATGAENLARAAAEVGA-RLVHISTD-YVF------DGEKGGPYKETDTPNPLNVYGRS 127
Query: 162 KSVAEQLVLKSNGR 175
K E+ V + R
Sbjct: 128 KLAGEEAVRAAGPR 141
|
Length = 281 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73
+VTGG G +GS L L RG + D + H +N I + + ++
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRD---GHKFLNLADLVIADYIDKEDFLD 57
Query: 74 KAARG----VDCVFHVA----SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125
+ +G ++ +FH + G+ M+ E N + +++ C E GI +
Sbjct: 58 RLEKGAFGKIEAIFHQGACSDTTETDGEYMM------ENNYQYSKRLLDWCAEKGI-PFI 110
Query: 126 YVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCL 185
Y S+ +G E P+ + YG SK + +Q V +
Sbjct: 111 YASS-AATYGDGEAGFREGRELERPL----NVYGYSKFLFDQYVRRRVLPEALSAQ---- 161
Query: 186 YTCAVRPAAIYGPGEE 201
+R +YGP E
Sbjct: 162 -VVGLRYFNVYGPREY 176
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 4e-05
Identities = 59/253 (23%), Positives = 105/253 (41%), Gaps = 40/253 (15%)
Query: 12 KTFLVTGGLGHVGSALCLELVR-----------RGAYQVRAFDLRTN---SPWSHLLINH 57
K +L+TG G +GS L EL+ YQ D+RT+ WS +
Sbjct: 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIF-- 73
Query: 58 GVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACL 117
IQGD+ D +KA + VD V H A+ G + + + NI+G +++ A
Sbjct: 74 ----IQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAAR 129
Query: 118 EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPF 177
+ + Y ++ + ++ E I + Y +K V E L R +
Sbjct: 130 DAHVSSFTYAASSSTYGDHPDLPKIEER-----IGRPLSPYAVTKYVNE-LYADVFARSY 183
Query: 178 KKNNRKCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKI-GEPSVKTDWI 230
+ N +R ++G + + +PR + L+ L P I G+ S D+
Sbjct: 184 EFN------AIGLRYFNVFGRRQNPNGAYSAVIPRWI-LSLLKDEPIYINGDGSTSRDFC 236
Query: 231 YVDNLVLALILAS 243
Y++N++ A +L++
Sbjct: 237 YIENVIQANLLSA 249
|
Length = 348 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 35/150 (23%), Positives = 51/150 (34%), Gaps = 24/150 (16%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQV-----RAFDLRTNSPWSHLLINHG----V 59
G +LVTGG G +G AL L RR ++ L V
Sbjct: 203 KPGGVYLVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEALGARV 262
Query: 60 HCIQGDVVSKIDVEKAARGV-------DCVFHVASYGMSGKEML------QFGRVDEVNI 106
I DV V + V D V H A G+ +L F V +
Sbjct: 263 LYISADVTDAAAVRRLLEKVRERYGAIDGVIHAA--GVLRDALLAQKTAEDFEAVLAPKV 320
Query: 107 NGTCHVIEACLEFGIQRLVYVSTYNVVFGG 136
+G ++ +A + + V S+ + FGG
Sbjct: 321 DGLLNLAQALADEPLDFFVLFSSVSAFFGG 350
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LV G G+ G ++ ++ G + VRA S + L GV ++GD+ + +
Sbjct: 2 LVFGATGYQGGSVVRASLKAG-HPVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVE 60
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
A +GVD VF V + KE+ D + +A E G++ +
Sbjct: 61 ALKGVDVVFSVTGF-WLSKEIE-----DGKKL------ADAAKEAGVKHFIPSE----FG 104
Query: 135 GGKEIVNGNE-SLPYF 149
+ NG E ++P+F
Sbjct: 105 NDVDRSNGVEPAVPHF 120
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCI--QGDVV 67
+G +VTGG +G A L+ +GA +V DL + + G +C DV
Sbjct: 1 KGLVAVVTGGASGLGLATVERLLAQGA-KVVILDL--PNSPGETVAKLGDNCRFVPVDVT 57
Query: 68 SKIDVEKAAR-------GVDCVFHVASYGMSGK----------EMLQFGRVDEVNINGTC 110
S+ DV+ A +D V + A ++ K + F RV VN+ GT
Sbjct: 58 SEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLIGTF 117
Query: 111 HVI 113
+VI
Sbjct: 118 NVI 120
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 67/270 (24%), Positives = 107/270 (39%), Gaps = 50/270 (18%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
L+TGG G +GS L L+ RG +QV D HL + + ++G + K V+K
Sbjct: 4 LITGGAGQIGSHLIEHLLERG-HQVVVIDNFATGRREHLPDHPNLTVVEGSIADKALVDK 62
Query: 75 AARGV--DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132
D V H A+ + K+ + N+ G +V++A + G++RL+Y T +
Sbjct: 63 LFGDFKPDAVVHTAA---AYKDPDDWYEDTLTNVVGGANVVQAAKKAGVKRLIYFQT-AL 118
Query: 133 VFGGKEIVNGNESLPYF---PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+G K + P P SY SK+ E + S G F
Sbjct: 119 CYGLKPMQQ-----PIRLDHPRAPPGSSYAISKTAGEYYLELS-GVDF----------VT 162
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVP-----FKIGE----PSVKTDWIYVDNLVLALI 240
R A + G PR V G +P K G+ + D+++V +L +
Sbjct: 163 FRLANVTG-------PRNVI----GPLPTFYQRLKAGKKCFVTDTRRDFVFVKDLARVVD 211
Query: 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGF 270
A LD I G +SG+ + + F
Sbjct: 212 KA----LDGIRGHGAYHFSSGEDVSIKELF 237
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 57/249 (22%), Positives = 81/249 (32%), Gaps = 50/249 (20%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
LVTG G VG A+ EL+ RG ++VRA N + L GV + GD+
Sbjct: 1 MKILVTGATGFVGGAVVRELLARG-HEVRA--AVRNPEAAAALAG-GVEVVLGDLRDPKS 56
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
+ A+GVD V ++ V EA G++ V +S
Sbjct: 57 LVAGAKGVDGVLLISGLLDGSDAFRAVQVTAVVR------AAEAAGA-GVKHGVSLS--- 106
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDS-YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAV 190
V G D S R+K+ E + S YT +
Sbjct: 107 -VLGA---------------DAASPSALARAKAAVEAALRSSGIP----------YT-TL 139
Query: 191 RPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250
R AA Y + GL G + I VD++ AL A L
Sbjct: 140 RRAAFYLGAGAAFIEAA---EAAGLPVIPRGIG--RLSPIAVDDVAEALAAA---LDAPA 191
Query: 251 PGQKGRPIA 259
+ +A
Sbjct: 192 TAGRTYELA 200
|
Length = 275 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAF----DLRTNSPWSHLLINHGVHCIQGDVVSKI 70
LVTG G+VG L L++ G +QVRA + + PWS V ++GD+
Sbjct: 2 LVTGATGYVGGRLVPRLLQEG-HQVRALVRSPEKLADRPWS-----ERVTVVRGDLEDPE 55
Query: 71 DVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
+ A G+D +++ SG + + R N A G++R++Y+
Sbjct: 56 SLRAALEGIDTAYYLVHSMGSGGDFEEADRRAARNFA------RAARAAGVKRIIYLG 107
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 73/272 (26%), Positives = 114/272 (41%), Gaps = 30/272 (11%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAF--DLRTNSPWSHLLINHG----VHCIQG 64
GK VTG G++ S + L+ RG Y V+A DL HLL G + +
Sbjct: 5 GKLVCVTGASGYIASWIVKLLLLRG-YTVKATVRDLTDRKKTEHLLALDGAKERLKLFKA 63
Query: 65 DVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQR 123
D++ + E+A G D VFH AS + Q +D + GT +V+ C E ++R
Sbjct: 64 DLLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPA-LKGTINVLNTCKETPSVKR 122
Query: 124 LVYVSTYNVVFGGKEIVNGNESL--PYFP----IDEHVDSYGRSKSVAEQLVLKSNGRPF 177
++ S+ V + + N+ + +F E + Y SK +AE + F
Sbjct: 123 VILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWE-----F 177
Query: 178 KKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGE-PSVKTDWIYVDNLV 236
K+N + + P I GP + L V L +V F G+ + +VD V
Sbjct: 178 AKDNG--IDMVVLNPGFICGPLLQPTLNFSVEL----IVDFINGKNLFNNRFYRFVD--V 229
Query: 237 LALILASMGLLDDIPGQKGRPIASGQPYFVSD 268
+ LA + L + P GR I G V+D
Sbjct: 230 RDVALAHIKAL-ETPSANGRYIIDGPIMSVND 260
|
Length = 322 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 71/256 (27%), Positives = 113/256 (44%), Gaps = 53/256 (20%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFD-LRTNSPWSHLLINHG---VHCIQG 64
E K L+TG G + S + L+R Y++ D L S +L + ++G
Sbjct: 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKG 64
Query: 65 DVVSKIDVEK--AARGVDCVFHVA-------SYGMSGKEMLQFGRVDEVNINGTCHVIEA 115
D+ S V G+D + H A S+G S +F + NI GT ++EA
Sbjct: 65 DIASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNS----FEF---TKNNIYGTHVLLEA 117
Query: 116 CLEFG-IQRLVYVSTYNVVFG--GKEIVNGNES----LPYFPIDEHVDSYGRSKSVAEQL 168
C G I+R ++VST + V+G ++ GN LP P Y +K+ AE L
Sbjct: 118 CKVTGQIRRFIHVST-DEVYGETDEDADVGNHEASQLLPTNP-------YSATKAGAEML 169
Query: 169 VL---KSNGRPFKKNNRKCLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKI-GE 222
V+ +S G P + T R +YGP + E+ +P+ + LA G P I G+
Sbjct: 170 VMAYGRSYGLP-------VITT---RGNNVYGPNQFPEKLIPKFILLAMQGK-PLPIHGD 218
Query: 223 PSVKTDWIYVDNLVLA 238
S ++Y +++ A
Sbjct: 219 GSNVRSYLYCEDVAEA 234
|
Length = 668 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 39/170 (22%), Positives = 59/170 (34%), Gaps = 36/170 (21%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV 72
L+TG G +G L +L G + + Q D+ D
Sbjct: 1 RILITGANGQLGRELVQQLSPEG--------------RVVVALTRS----QLDLT---DP 39
Query: 73 EKAARGV-----DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
E R + D V + A+Y + VN ++ A G RLV++
Sbjct: 40 EALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHI 98
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEH--VDSYGRSKSVAEQLVLKSNGR 175
ST + VF G+ PY D ++ YG+SK EQ V +
Sbjct: 99 ST-DYVFDGEG------KRPYREDDATNPLNVYGQSKLAGEQAVRAAGPN 141
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 27/134 (20%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAYQV-----------RAFDLRT--NSPWSHLLINH 57
K+ L+TGG G G A L+ Y + ++++ +P I
Sbjct: 4 NKSILITGGTGSFGKAFISRLLEN--YNPKKIIIYSRDELKQWEMQQKFPAPCLRFFI-- 59
Query: 58 GVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEV--NINGTCHVIEA 115
GDV K + +A RGVD V H A+ + ++ + + NING +VI+A
Sbjct: 60 ------GDVRDKERLTRALRGVDYVVHAAA--LKQVPAAEYNPFECIRTNINGAQNVIDA 111
Query: 116 CLEFGIQRLVYVST 129
++ G++R+V +ST
Sbjct: 112 AIDNGVKRVVALST 125
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 29/131 (22%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP----WSHLLINHG--VHCI 62
+EGK LVTG +G A+ L +GA V + ++ + G +
Sbjct: 3 LEGKVALVTGASRGIGRAIAERLAAQGA-NV-VINYASSEAGAEALVAEIGALGGKALAV 60
Query: 63 QGDVVSKIDVEKAARGVDCVFHVASYG-----------MSGKEMLQ-----FGRVDEVNI 106
QGDV VE+A A +G +++ + RV + N+
Sbjct: 61 QGDVSDAESVERAVDEA-----KAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNL 115
Query: 107 NGTCHVIEACL 117
G ++ +A
Sbjct: 116 TGVFNLTKAVA 126
|
Length = 248 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 47/228 (20%), Positives = 81/228 (35%), Gaps = 72/228 (31%)
Query: 13 TFLVTGGLGHVGSALCLELVRRG----AY-QVRAFD-------LRTNSPWSHLLINHGVH 60
T L+TG G +G+ L EL++R Y VRA D L N L +G++
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDN------LKEYGLN 54
Query: 61 CIQGDVVSKIDV-----------------EKAARGVDCVFHVASYGMSGKEMLQFGRVD- 102
+S+I V ++ A VD + H + V+
Sbjct: 55 LWDELELSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGA------------NVNW 102
Query: 103 --------EVNINGTCHVIEACLEFGIQRLVYVST---YNVVFGGKEIVNGNESLPYFPI 151
N+ GT +++ ++ L +VST ++ ++ +
Sbjct: 103 VYPYEELKPANVLGTKELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQN 162
Query: 152 DEHVDSYGRSKSVAEQLVLK--SNGRPFKKNNRKCLYTCAVRPAAIYG 197
Y +SK VAE+L+ + + G P +RP I+G
Sbjct: 163 GLPN-GYIQSKWVAEKLLREAANRGLP----------VAIIRPGNIFG 199
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQV-----RAFDLRTNSPWSHLLINHG--VHCIQG 64
T+L+TGGLG +G AL L RGA ++ D + L G V +
Sbjct: 1 GTYLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLAELEAAGARVTVVAC 60
Query: 65 DVVSKIDVEKAARGVDCVFH 84
DV + + + V
Sbjct: 61 DVADRDALAAVLAAIPAVEG 80
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRA--FDLRTNSPWSHLLINHG----VHCIQG 64
GK VTG G++ S + L+ RG Y + A D + HLL G + +
Sbjct: 5 GKVVCVTGASGYIASWIVKLLLFRG-YTINATVRDPKDRKKTDHLLALDGAKERLKLFKA 63
Query: 65 DVVSKIDVEKAARGVDCVFHVAS-YGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQ 122
D++ + E A G + VFH AS ++ K Q ++ +NGT +V+ C + ++
Sbjct: 64 DLLDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPA-VNGTINVLRTCTKVSSVK 122
Query: 123 RLVYVSTYNVVFGGKEIVNGNESL-------PYFPIDEHVDSYGRSKSVAEQLVLKSNGR 175
R++ S+ V + + N+ + P F +E Y SK++AE +
Sbjct: 123 RVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFA-EERKQWYVLSKTLAEDAAWR---- 177
Query: 176 PFKKNNRKCLYTCAVRPAAIYGP 198
F K+N L + P + GP
Sbjct: 178 -FAKDNEIDLIV--LNPGLVTGP 197
|
Length = 325 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV 67
++GK +VTGG +G A+ EL+ GA V D+ + + DV
Sbjct: 6 NLQGKIIIVTGGSSGIGLAIVKELLANGAN-VVNADIHGGDG-----QHENYQFVPTDVS 59
Query: 68 SKIDVEKAA 76
S +V
Sbjct: 60 SAEEVNHTV 68
|
Length = 266 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 29/126 (23%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDV 66
K L+TG +G AL L L +G Y+V A T L L+N + ++ DV
Sbjct: 1 KVVLITGCSSGIGLALALALAAQG-YRVIA----TARNPDKLESLGELLNDNLEVLELDV 55
Query: 67 VSKIDVEKAARGV-------DCVFHVASYGMSG-------KEML-QFGRVDEVNINGTCH 111
+ ++ A + V D + + A YG+ G +E+ F EVN+ G
Sbjct: 56 TDEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELF----EVNVFGPLR 111
Query: 112 VIEACL 117
V A L
Sbjct: 112 VTRAFL 117
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLIN---HGVHCIQGDVVSKID 71
LVTG +G A+ L R GA +V D + I +Q DV + D
Sbjct: 2 LVTGASSGIGRAIARRLAREGA-KVVLADRNEEALAELAAIEALGGNAVAVQADVSDEED 60
Query: 72 VEKAAR-------GVDCVFHVASYGMSGKEML------QFGRVDEVNINGTCHVIEACL 117
VE +D + + A G++ L + RV +VN+ G + A L
Sbjct: 61 VEALVEEALEEFGRLDILVNNA--GIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAAL 117
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
+ G G GSA+ E + RG ++V A P + + +QGDV+ DV++
Sbjct: 3 AIIGATGRTGSAIVREALARG-HEVTAL---VRDPAKLPAEHEKLKVVQGDVLDLEDVKE 58
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
A G D V +++ G GT +++ A G++RL+ V
Sbjct: 59 ALEGQDAV--ISALGTRNDL----SPTTLH-SEGTRNIVSAMKAAGVKRLIVVGG 106
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 33/174 (18%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW---------SHLLINHGVHCI 62
LVTG G +G + L+ RG +V D N + L + G +
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERG-DEVVGID-NLNDYYDVRLKEARLELLGKSGGFKFV 58
Query: 63 QGDVVSKIDVEKAARGV--DCVFHVAS-----YGMSGKEMLQFGRVDEVNINGTCHVIEA 115
+GD+ + + + + D V H+A+ Y + + NI G +++E
Sbjct: 59 KGDLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYV-----DSNIVGFLNLLEL 113
Query: 116 CLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF---PIDEHVDSYGRSKSVAE 166
C FG++ LVY S+ + V+G N +P+ +D + Y +K E
Sbjct: 114 CRHFGVKHLVYASS-SSVYG------LNTKMPFSEDDRVDHPISLYAATKKANE 160
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS 68
I+GK LVTG +G A +L+ RGA +V A R + L V +Q DV
Sbjct: 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYA-AARDPESVTDL--GPRVVPLQLDVTD 60
Query: 69 KIDVEKAAR 77
V AA
Sbjct: 61 PASVAAAAE 69
|
Length = 238 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 23/127 (18%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP----WSHLLINHG--VHCIQ 63
G+ LVTG +G A+ L L R GA V R++ + G +Q
Sbjct: 5 MGRVALVTGAARGLGRAIALRLARAGADVV--VHYRSDEEAAEELVEAVEALGRRAQAVQ 62
Query: 64 GDVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEML------QFGRVDEVNINGTC 110
DV K +E A +D + V + G+ + L ++ V +VN++G
Sbjct: 63 ADVTDKAALEAAVAAAVERFGRIDIL--VNNAGIFEDKPLADMSDDEWDEVIDVNLSGVF 120
Query: 111 HVIEACL 117
H++ A +
Sbjct: 121 HLLRAVV 127
|
Length = 249 |
| >gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 16/109 (14%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
+ G G +G + L+ + V R +S S+ GV + D S +
Sbjct: 3 AIAGATGTLGGPIVSALLASPGFTVTVL-TRPSSTSSNEFQPSGVKVVPVDYASHESLVA 61
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123
A +GVD V G ++ +I+A + G++R
Sbjct: 62 ALKGVDAVISALGGAAIGDQL---------------KLIDAAIAAGVKR 95
|
PCBER and pinoresinol-lariciresinol reductases are NADPH-dependent aromatic alcohol reductases, and are atypical members of the SDR family. Other proteins in this subgroup are identified as eugenol synthase. These proteins contain an N-terminus characteristic of NAD(P)-binding proteins and a small C-terminal domain presumed to be involved in substrate binding, but they do not have the conserved active site Tyr residue typically found in SDRs. Numerous other members have unknown functions. The glycine rich NADP-binding motif in this subgroup is of 2 forms: GXGXXG and G[GA]XGXXG; it tends to be atypical compared with the forms generally seen in classical or extended SDRs. The usual SDR active site tetrad is not present, but a critical active site Lys at the usual SDR position has been identified in various members, though other charged and polar residues are found at this position in this subgroup. Atypical SDR-related proteins retain the Rossmann fold of the SDRs, but have limited sequence identity and generally lack the catalytic properties of the archetypical members. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 282 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 17/159 (10%)
Query: 15 LVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73
L+TGGLG +GS L L +R G V A D+R P +H++++ DV+ +E
Sbjct: 3 LITGGLGQIGSELAKLLRKRYGKDNVIASDIR--KPPAHVVLSGPF--EYLDVLDFKSLE 58
Query: 74 KAAR--GVDCVFHVASYGMS--GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
+ + + H+A+ +S G++ +VN+NG +V+E E + R+ ST
Sbjct: 59 EIVVNHKITWIIHLAAL-LSAVGEKNPPLAW--DVNMNGLHNVLELAREHNL-RIFVPST 114
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168
FG + P I YG SK AE L
Sbjct: 115 IG-AFGPT---TPRNNTPDDTIQRPRTIYGVSKVAAELL 149
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 35/220 (15%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAF--DLRTNSPWSHL--LINHG-VHCIQGDV 66
KT V GG G + S L L+++G Y V D +HL L G + D+
Sbjct: 10 KTACVIGGTGFLASLLIKLLLQKG-YAVNTTVRDPENQKKIAHLRALQELGDLKIFGADL 68
Query: 67 VSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVN------INGTCHVIEACLEF- 119
+ E G D VFHVA+ + F D N I G +V++AC +
Sbjct: 69 TDEESFEAPIAGCDLVFHVAT-------PVNFASEDPENDMIKPAIQGVHNVLKACAKAK 121
Query: 120 GIQRLVYVS-----TYNVVFGGKEIVN-GNESLPYFPIDEHVDSYGR--SKSVAEQLVLK 171
++R++ S + N + G ++N N + F E ++G SK++AE+ K
Sbjct: 122 SVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWK 181
Query: 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLA 211
F + N L T V P + GP +P +SLA
Sbjct: 182 -----FAEENNIDLIT--VIPTLMAGPSLTSDIPSSLSLA 214
|
Length = 338 |
| >gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
LVTG G +GS + L+ G VRA +R++ + L G + GD+ +
Sbjct: 2 LVTGATGRIGSKVATTLLEAGR-PVRAL-VRSDER-AAALAARGAEVVVGDLDDPAVLAA 58
Query: 75 AARGVDCVFHVASYGMSGK---EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
A GVD VF +A + +Q A E G++R+V +S+
Sbjct: 59 ALAGVDAVFFLAPPAPTADARPGYVQAAEA----------FASALREAGVKRVVNLSSV 107
|
Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 42/182 (23%), Positives = 59/182 (32%), Gaps = 44/182 (24%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG---VHCIQGDVV 67
GK LVTGG +G A+ L GA V D+ G +Q DV
Sbjct: 1 GKVALVTGGASGIGLAIAKRLAAEGA-AVVVADIDPEIAEKVAEAAQGGPRALGVQCDVT 59
Query: 68 SKIDV----EKAAR---GVDCVFHVASYGMSGK------EMLQFGRVDEVNINGTCHVI- 113
S+ V E+A G+D V A S E ++IN T H +
Sbjct: 60 SEAQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAETSLEDWN----RSMDINLTGHFLV 115
Query: 114 --EACLEFGIQ----RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167
EA Q +V+ ++ N V G +Y +K+
Sbjct: 116 SREAFRIMKSQGIGGNIVFNASKNAVAPGPNAA----------------AYSAAKAAEAH 159
Query: 168 LV 169
L
Sbjct: 160 LA 161
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 44/204 (21%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW--SHLLINHG---VHCIQGDV- 66
+ VTGG G +G L L+ R +R S L G V + GD+
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLT 61
Query: 67 -----VSKIDVEKAARGVDCVFHVAS-YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
+S+ D+ + +D V H+A+ Y ++ E Q N++GT +V+E
Sbjct: 62 EPGLGLSEADIAELGD-IDHVVHLAAIYDLTADEEAQ----RAANVDGTRNVVELAERLQ 116
Query: 121 IQRLVYVST------YNVVFGGKEIVNGNESLPYFPIDEHVDS-YGRSKSVAEQLVLKSN 173
+VS+ Y VF E F + + + Y R+K AE+LV +
Sbjct: 117 AATFHHVSSIAVAGDYEGVF--------REDD--FDEGQGLPTPYHRTKFEAEKLVREEC 166
Query: 174 GRPFKKNNRKCLYTCAVRPAAIYG 197
G P++ +Y RPA + G
Sbjct: 167 GLPWR------VY----RPAVVVG 180
|
Length = 657 |
| >gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF--DLRTNSPWSHLLINHG----VHC 61
G + +T VTG G +GS L + L+ RG Y VRA D HLL G +
Sbjct: 2 GSQKETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPANVKKVKHLLDLPGATTRLTL 60
Query: 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVN------INGTCHVIEA 115
+ D+ + + A RG VFHVA+ + F D N +NG +++A
Sbjct: 61 WKADLAVEGSFDDAIRGCTGVFHVAT-------PMDFESKDPENEVIKPTVNGMLSIMKA 113
Query: 116 CLEFG-IQRLVYVSTYNVV 133
C + ++R+V+ S+ V
Sbjct: 114 CAKAKTVRRIVFTSSAGTV 132
|
Length = 351 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 22/126 (17%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGA----YQVRAFDL-RTNSPWSHLLINHGVHCIQG 64
+GKT LVTG +G A+ L L GA Y + +
Sbjct: 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGE--ARVLVF 61
Query: 65 DVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEML------QFGRVDEVNINGTCH 111
DV + V +D + + A G++ +L + RV +VN+ GT +
Sbjct: 62 DVSDEAAVRALIEAAVEAFGALDILVNNA--GITRDALLPRMSEEDWDRVIDVNLTGTFN 119
Query: 112 VIEACL 117
V+ A L
Sbjct: 120 VVRAAL 125
|
Length = 246 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR-TNSPWSHLLINH------GVHCIQGD 65
T+LVTGGLG +G L L RGA + P + L+ V + D
Sbjct: 2 TYLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVACD 61
Query: 66 VVSKIDVEKAARGVDC-------VFHVA 86
V + V + V H A
Sbjct: 62 VSDRDAVRALLAEIRADGPPLRGVIHAA 89
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.97 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.96 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.95 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.95 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.95 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.94 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.93 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.92 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.92 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.91 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.91 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.91 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.9 | |
| PF14934 | 91 | DUF4499: Domain of unknown function (DUF4499) | 99.89 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.89 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.89 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.89 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.89 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.88 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.87 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.87 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.87 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.87 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.86 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.86 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.85 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.85 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.84 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.84 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.84 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.84 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.83 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.83 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.83 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.83 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.82 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.82 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.82 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.82 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.81 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.81 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.81 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.81 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.81 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.8 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.8 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.8 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.8 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.8 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.8 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.8 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.79 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.79 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.79 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.79 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.79 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.79 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.79 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.79 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.79 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.78 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.78 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.77 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.77 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.77 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.76 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.76 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.76 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.76 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.76 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.76 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.75 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.75 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.75 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.74 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.73 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.73 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.72 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.72 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.71 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.71 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.71 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.71 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.7 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.69 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.69 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.68 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.68 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.67 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.66 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.66 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.66 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.65 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.64 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.64 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.63 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.63 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.63 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.62 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.62 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.61 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.61 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.61 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.61 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.6 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.59 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.59 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.59 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.57 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.57 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.55 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.55 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.53 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.51 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.5 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.49 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.47 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.45 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.44 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.43 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.43 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.42 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.41 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.41 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.39 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.35 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.34 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.32 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.31 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.31 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.29 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.28 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.27 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.26 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.21 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.19 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.18 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.16 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.14 | |
| PLN00106 | 323 | malate dehydrogenase | 99.09 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.08 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.03 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.02 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.95 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.85 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.79 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.72 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.65 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.55 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 98.55 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.52 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.5 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.41 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.39 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.36 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.29 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.27 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.26 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.14 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.14 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.11 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.09 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.06 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.03 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.84 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.76 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.76 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.69 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.68 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.67 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.65 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.58 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.57 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.56 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.56 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.56 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.52 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.52 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.5 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.44 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.43 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.41 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.32 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.31 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.3 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.26 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.25 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.23 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.23 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.23 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.21 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.2 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.2 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.17 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.17 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.17 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.15 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.13 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.13 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.13 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.11 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.07 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.05 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.05 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.03 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.03 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.02 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 97.01 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.95 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.92 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.91 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.87 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.85 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.82 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.82 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.81 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.8 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.76 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.76 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.74 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 96.73 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.69 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.68 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.64 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.63 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.6 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 96.54 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.52 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.49 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.48 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.45 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.41 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.4 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.36 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.31 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.31 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.27 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.26 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.25 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 96.24 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 96.24 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.23 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.23 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.22 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.21 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.09 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.07 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.04 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.03 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 95.99 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.94 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.92 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.91 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.9 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.9 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.89 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.85 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.82 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.8 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.79 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.78 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.73 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.71 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.7 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.69 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.68 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.64 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.57 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 95.57 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.56 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.54 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 95.51 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 95.5 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.5 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.49 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 95.49 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.48 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.48 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.46 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.45 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.45 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.44 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.41 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 95.41 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.41 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 95.37 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.35 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.33 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.3 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.25 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.23 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.16 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.15 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.09 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 95.03 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 94.95 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.94 | |
| PLN02928 | 347 | oxidoreductase family protein | 94.93 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 94.91 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 94.91 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 94.91 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 94.89 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.84 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 94.84 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 94.83 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 94.82 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.81 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.81 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.8 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 94.79 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.77 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 94.77 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 94.72 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.71 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 94.68 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.68 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 94.65 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.64 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 94.61 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.61 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.56 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.55 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.55 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.49 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 94.49 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 94.45 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.44 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 94.43 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 94.39 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.38 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 94.36 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 94.32 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 94.21 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 94.17 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 94.15 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 94.14 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.13 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.12 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 94.11 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.1 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.1 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 94.1 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.09 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.04 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 94.02 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 93.97 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 93.97 |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=431.22 Aligned_cols=344 Identities=40% Similarity=0.638 Sum_probs=314.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCC-Cccccccc---CCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTN-SPWSHLLI---NHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~-~~~~~~~~---~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
+++.+++||||+||+|+||+++|++++ .+ |+++|..+. ..+..... ...++++++|++|...+.++++++ +|
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~-irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~V 79 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLE-IRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VV 79 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccE-EEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eE
Confidence 356799999999999999999999998 55 999998876 23322222 567999999999999999999999 99
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhH
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
+||||..++.....+++.++++||.||.|++++|++.|++++||+||.+|++++.+..+.+|+.|+. ..+.++|+.||
T Consensus 80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p--~~~~d~Y~~sK 157 (361)
T KOG1430|consen 80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYP--LKHIDPYGESK 157 (361)
T ss_pred EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCCc--cccccccchHH
Confidence 9999987777777778999999999999999999999999999999999999999888999999886 45678999999
Q ss_pred HHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHH
Q 011770 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a 242 (478)
+.||++++++++ ..++.+|+|||+.|||||+..+++.++..+++|..++..|+++...|++|+++++.|+++|
T Consensus 158 a~aE~~Vl~an~-------~~~l~T~aLR~~~IYGpgd~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA 230 (361)
T KOG1430|consen 158 ALAEKLVLEANG-------SDDLYTCALRPPGIYGPGDKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILA 230 (361)
T ss_pred HHHHHHHHHhcC-------CCCeeEEEEccccccCCCCccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHH
Confidence 999999999975 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCC-cccCChHHHHHHHHHHHHHHHhhhhcccccc
Q 011770 243 SMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP-KSWLAVPHALFLGKVFSFFYSVLYPWLNRWW 321 (478)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~-~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (478)
..++... .+...|++|+|+|++++...+++..+.+.+|+..| ...+|.++.+.++.+.++++.+++|
T Consensus 231 ~~aL~~~------~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p------ 298 (361)
T KOG1430|consen 231 ARALLDK------SPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRP------ 298 (361)
T ss_pred HHHHHhc------CCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccC------
Confidence 9988754 56889999999999999999999999999999998 7899999999999999999999987
Q ss_pred CCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCC
Q 011770 322 LPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKS 376 (478)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~ 376 (478)
.+|.+++.+++.++.+++||++||+++|||+|..++++++.+++.|+.......
T Consensus 299 -~~p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~~ 352 (361)
T KOG1430|consen 299 -YQPILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDSA 352 (361)
T ss_pred -CCCCcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhcc
Confidence 578899999999999999999999999999999999999999999987665553
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=383.15 Aligned_cols=309 Identities=23% Similarity=0.283 Sum_probs=260.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCc----ccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSP----WSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFH 84 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~----~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViH 84 (478)
|++|||||+||||+++++.++++..+ +|+++|.-.-.. .......++..|+++||+|.+.+.++++ ++|+|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 57999999999999999999998653 388888643321 1123345789999999999999999998 5999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEeccceeeCCccc--cCCCCCCCCCCCCccCCchHhh
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTYNVVFGGKEI--VNGNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~~v~~g~~~~--~~~~E~~p~~p~~~~~~~Y~~s 161 (478)
+||-+..+.+-.+|..+.++|+.||.+|||+++++..+ ||+|+||..| ||.... ...+|++|+.|. +||+.|
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEV-YG~l~~~~~~FtE~tp~~Ps----SPYSAS 155 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEV-YGDLGLDDDAFTETTPYNPS----SPYSAS 155 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccc-cccccCCCCCcccCCCCCCC----CCcchh
Confidence 99998888898999999999999999999999999864 9999999999 554333 368999999997 899999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLAL 239 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~ 239 (478)
|+.++.+++++.. .+|++++|.|+++-|||.+.. ++|.++..+..|++++++|+|.+.|||+||+|-++|+
T Consensus 156 KAasD~lVray~~-------TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai 228 (340)
T COG1088 156 KAASDLLVRAYVR-------TYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAI 228 (340)
T ss_pred hhhHHHHHHHHHH-------HcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHH
Confidence 9999999999986 799999999999999998764 8999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccc
Q 011770 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNR 319 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~ 319 (478)
-..+++ ...|++|||+++...+..|+++.|++.+|...+... +++..+ .
T Consensus 229 ~~Vl~k------------g~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~-------------~li~~V-----~- 277 (340)
T COG1088 229 DLVLTK------------GKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYR-------------DLITFV-----E- 277 (340)
T ss_pred HHHHhc------------CcCCceEEeCCCccchHHHHHHHHHHHhCccccchh-------------hheEec-----c-
Confidence 999874 345999999999999999999999999998765300 000000 0
Q ss_pred ccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 320 WWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
..|-.. ....+|.+|++++|||+|++++|+||++|++||.++.+
T Consensus 278 ---DRpGHD--------~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv~WY~~N~~ 321 (340)
T COG1088 278 ---DRPGHD--------RRYAIDASKIKRELGWRPQETFETGLRKTVDWYLDNEW 321 (340)
T ss_pred ---CCCCCc--------cceeechHHHhhhcCCCcCCCHHHHHHHHHHHHHhchH
Confidence 122111 12236999999999999999999999999999998754
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=375.94 Aligned_cols=302 Identities=24% Similarity=0.304 Sum_probs=253.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~ 89 (478)
|+||||||+||||||.+.+|++.|++ |+++|+-..+...... ...+++++||++|.+.+.+.++ ++|.|||+||..
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~-vvV~DNL~~g~~~~v~-~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~ 78 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHE-VVVLDNLSNGHKIALL-KLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASI 78 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCCHHHhh-hccCceEEeccccHHHHHHHHHhcCCCEEEECcccc
Confidence 58999999999999999999999999 9999987654321111 1116899999999999999997 689999999998
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
..+.+..+|..+++.|+.||.+|+++|+++|+++|||-||.+| ||.+...|++|+.|..|. +|||+||++.|+++
T Consensus 79 ~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAav-YG~p~~~PI~E~~~~~p~----NPYG~sKlm~E~iL 153 (329)
T COG1087 79 SVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAV-YGEPTTSPISETSPLAPI----NPYGRSKLMSEEIL 153 (329)
T ss_pred ccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhh-cCCCCCcccCCCCCCCCC----CcchhHHHHHHHHH
Confidence 8899999999999999999999999999999999999999988 788888999999999987 89999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCC-----------CcHHHHHHHHHcCC-CCeeeC------CCCcccccee
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-----------RHLPRIVSLAKLGL-VPFKIG------EPSVKTDWIY 231 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-----------~~~~~~i~~~~~g~-~~~~~g------~g~~~~~~v~ 231 (478)
..+.. .+++++++||-+++-|.... ..+|.+.+.+.... .+.++| ||+..|||||
T Consensus 154 ~d~~~-------a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIH 226 (329)
T COG1087 154 RDAAK-------ANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIH 226 (329)
T ss_pred HHHHH-------hCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeee
Confidence 98875 57799999999999997543 13555555444333 355666 4888999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHH
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYS 311 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~ 311 (478)
|.|+|+|+++|++.+.+. ....+||+++|...|.+|+++.+.+..|.+.|....|...
T Consensus 227 V~DLA~aH~~Al~~L~~~---------g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~------------- 284 (329)
T COG1087 227 VDDLADAHVLALKYLKEG---------GSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRA------------- 284 (329)
T ss_pred hhHHHHHHHHHHHHHHhC---------CceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCC-------------
Confidence 999999999999976543 1226999999999999999999999999887764433110
Q ss_pred hhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCC-ChHHHHHHHHHHHHH
Q 011770 312 VLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIV-SPREGMAATISYWQD 371 (478)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~~~e~l~~~i~~~~~ 371 (478)
.+| ...+.|++||+++|||+|++ ++++.++++.+|.+.
T Consensus 285 -----------GDp-----------a~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 285 -----------GDP-----------AILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred -----------CCC-----------ceeEeCHHHHHHHhCCCcccCCHHHHHHHHHHHhhh
Confidence 122 13467999999999999999 999999999999984
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-50 Score=402.11 Aligned_cols=314 Identities=21% Similarity=0.237 Sum_probs=247.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---------cccCCCeEEEEecCCCHHHHHHHhcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---------LLINHGVHCIQGDVVSKIDVEKAARG 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---------~~~~~~v~~v~gDl~d~~~l~~~l~~ 78 (478)
.+++|+|||||||||||++|+++|+++|++ |+++||........ .....+++++.+|++|.+.+.+++++
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 466789999999999999999999999998 99999865421100 00113588999999999999999999
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCch
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSY 158 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y 158 (478)
+|+|||+|+......+..++...+++|+.||.|++++|++.++++|||+||.+| ||.....+.+|+.+..|. ++|
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~p~----~~Y 165 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSST-YGDHPDLPKIEERIGRPL----SPY 165 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHh-hCCCCCCCCCCCCCCCCC----Chh
Confidence 999999999755444555677889999999999999999999999999999998 454344455676666554 789
Q ss_pred HhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 159 GRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 159 ~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
+.||.++|+++..+.. .++++++++||++||||++. .+++.++..+..|..+.++|+|++.+||+||
T Consensus 166 ~~sK~~~e~~~~~~~~-------~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v 238 (348)
T PRK15181 166 AVTKYVNELYADVFAR-------SYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYI 238 (348)
T ss_pred hHHHHHHHHHHHHHHH-------HhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEH
Confidence 9999999999988754 57899999999999999863 2578888888888888888999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHh
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSV 312 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~ 312 (478)
+|+|+++++++.. ......+++|||++|+++|++|+++.+.+.++..........
T Consensus 239 ~D~a~a~~~~~~~---------~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~---------------- 293 (348)
T PRK15181 239 ENVIQANLLSATT---------NDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAE---------------- 293 (348)
T ss_pred HHHHHHHHHHHhc---------ccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCC----------------
Confidence 9999999887752 011235789999999999999999999998874321000000
Q ss_pred hhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 313 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 313 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
+. ..+. .+.+. ....+|++|++++|||+|+++++|+++++++|++.+
T Consensus 294 --~~------~~~~-~~~~~----~~~~~d~~k~~~~lGw~P~~sl~egl~~~~~w~~~~ 340 (348)
T PRK15181 294 --PI------YKDF-RDGDV----KHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYIDK 340 (348)
T ss_pred --cc------cCCC-CCCcc----cccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 00 0110 01111 123579999999999999999999999999999865
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=376.67 Aligned_cols=271 Identities=39% Similarity=0.643 Sum_probs=229.5
Q ss_pred EEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCcccccccC-CCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 15 LVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWSHLLIN-HGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 15 LVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~~~~~~-~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
|||||+||||++|+++|+++| ++ |+++|+.++......... ...+++++|++|.+++.++++++|+|||+|+....
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~-Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~ 79 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYE-VRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPP 79 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceE-EEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccc
Confidence 699999999999999999999 56 999998776433222222 33449999999999999999999999999997544
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeC---CccccCCCCCCCCCCCCccCCchHhhHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFG---GKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g---~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~ 168 (478)
.. ....+.++++||.||+|++++|++.+++|+||+||.+|++. +.+..+.+|+.|+.+. +.+.|+.||++||++
T Consensus 80 ~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~--~~~~Y~~SK~~AE~~ 156 (280)
T PF01073_consen 80 WG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSS--PLDPYAESKALAEKA 156 (280)
T ss_pred cC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCccccc--ccCchHHHHHHHHHH
Confidence 33 34567899999999999999999999999999999999876 4455567888877543 458999999999999
Q ss_pred HHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccC
Q 011770 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLD 248 (478)
Q Consensus 169 v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~ 248 (478)
+++++...+++ ...+++|+|||+.||||++....+.+.+.++.|...+.+|+++...+++||+|+|.|+++|++++.+
T Consensus 157 V~~a~~~~~~~--g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~ 234 (280)
T PF01073_consen 157 VLEANGSELKN--GGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLE 234 (280)
T ss_pred HHhhccccccc--ccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhcc
Confidence 99987644433 3479999999999999999999999999999998888899999999999999999999999987664
Q ss_pred CCCCCCCCCCCCCceEEecCCCCCC-HHHHHHHHHHhcCCCCCc-ccCC
Q 011770 249 DIPGQKGRPIASGQPYFVSDGFPIN-TFEFIGPLLKTLDYDLPK-SWLA 295 (478)
Q Consensus 249 ~~~~~~~~~~~~g~~yni~~g~~~s-~~e~~~~i~~~lg~~~~~-~~lp 295 (478)
. +......|++|+|+|++|++ ++||.+.+.+.+|++.|. +.+|
T Consensus 235 ~----~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~~~~lp 279 (280)
T PF01073_consen 235 P----GKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPKSISLP 279 (280)
T ss_pred c----cccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCcccCCC
Confidence 3 01346789999999999999 999999999999999887 6666
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=375.91 Aligned_cols=318 Identities=17% Similarity=0.163 Sum_probs=236.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
..+.|+|||||||||||++|+++|+++ |++ |++++|+........ ....+++++.+|++|.+.+.++++++|+
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~-V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHK-VLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCE-EEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 356679999999999999999999998 587 999997653211000 1124699999999999999999999999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCC------------
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF------------ 149 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~------------ 149 (478)
|||||+.........++......|+.++.|++++|++.+ +||||+||.+| ||.....+.+|+.|..
T Consensus 90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~v-Yg~~~~~~~~e~~p~~~~~~~~~~~e~~ 167 (386)
T PLN02427 90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEV-YGKTIGSFLPKDHPLRQDPAFYVLKEDE 167 (386)
T ss_pred EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeee-eCCCcCCCCCcccccccccccccccccc
Confidence 999999654333333455667789999999999999988 89999999998 4543222333433321
Q ss_pred ------CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-------------CcHHHHHHH
Q 011770 150 ------PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-------------RHLPRIVSL 210 (478)
Q Consensus 150 ------p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-------------~~~~~~i~~ 210 (478)
|...+.+.|+.||.++|+++..+.. .++++++++||++||||++. ..++.++..
T Consensus 168 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-------~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~ 240 (386)
T PLN02427 168 SPCIFGSIEKQRWSYACAKQLIERLIYAEGA-------ENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNN 240 (386)
T ss_pred cccccCCCCccccchHHHHHHHHHHHHHHHh-------hcCCceEEecccceeCCCCCccccccccccccchHHHHHHHH
Confidence 1112346899999999999988764 57899999999999999853 123445566
Q ss_pred HHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC-CCCCHHHHHHHHHHhcCCCC
Q 011770 211 AKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG-FPINTFEFIGPLLKTLDYDL 289 (478)
Q Consensus 211 ~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g-~~~s~~e~~~~i~~~lg~~~ 289 (478)
+.++.++.++|++++.++|+||+|+|++++.++++ .....|++||++++ +++++.|+++.+.+.+|...
T Consensus 241 ~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~----------~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~ 310 (386)
T PLN02427 241 LLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIEN----------PARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVS 310 (386)
T ss_pred HhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhC----------cccccCceEEeCCCCCCccHHHHHHHHHHHhcccc
Confidence 67788777889999999999999999999999873 11235789999997 69999999999999988521
Q ss_pred --Cc-----ccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHH
Q 011770 290 --PK-----SWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGM 362 (478)
Q Consensus 290 --~~-----~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l 362 (478)
+. +.+|. .+..... ..-......|++|++++|||+|+++++++|
T Consensus 311 ~~~~~~~~~~~~~~---------------------------~~~~~~~--~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl 361 (386)
T PLN02427 311 GEPALEEPTVDVSS---------------------------KEFYGEG--YDDSDKRIPDMTIINKQLGWNPKTSLWDLL 361 (386)
T ss_pred ccccccccccccCc---------------------------ccccCcc--ccchhhccCCHHHHHHhcCCCcCccHHHHH
Confidence 10 01110 0000000 000112356999999999999999999999
Q ss_pred HHHHHHHHHccC
Q 011770 363 AATISYWQDRKR 374 (478)
Q Consensus 363 ~~~i~~~~~~~~ 374 (478)
+++++|+++.--
T Consensus 362 ~~~~~~~~~~~~ 373 (386)
T PLN02427 362 ESTLTYQHKTYA 373 (386)
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=369.91 Aligned_cols=325 Identities=17% Similarity=0.183 Sum_probs=242.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCC-CHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV-SKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~-d~~~l~~~l~~~D~ViHlAa~ 88 (478)
||+|||||||||||++|+++|+++ |++ |++++|+.... .......+++++.+|++ +.+.+.++++++|+|||||+.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~-V~~~~r~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~ 78 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWE-VYGMDMQTDRL-GDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAI 78 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCe-EEEEeCcHHHH-HHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECccc
Confidence 468999999999999999999987 688 99999864321 11122356999999998 778888899999999999997
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCC---CCCCccCCchHhhHHHH
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~---~p~~~~~~~Y~~sK~~a 165 (478)
........++...+++|+.||.|++++|++.+ +++||+||..|| |.....+.+|+.+. .|...+.++|+.||.++
T Consensus 79 ~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vy-g~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~ 156 (347)
T PRK11908 79 ATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVY-GMCPDEEFDPEASPLVYGPINKPRWIYACSKQLM 156 (347)
T ss_pred CChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceee-ccCCCcCcCccccccccCcCCCccchHHHHHHHH
Confidence 65544455777889999999999999999998 799999999984 54333345554432 23333457899999999
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC----------CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHH
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE----------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNL 235 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~----------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dv 235 (478)
|++++.+.. .++++++++||+++|||++. +.++.++..+..|..+.+.++|++.++|+||+|+
T Consensus 157 e~~~~~~~~-------~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~ 229 (347)
T PRK11908 157 DRVIWAYGM-------EEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDG 229 (347)
T ss_pred HHHHHHHHH-------HcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHH
Confidence 999998764 57899999999999999852 2466778888888887778889999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC-CCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhh
Q 011770 236 VLALILASMGLLDDIPGQKGRPIASGQPYFVSDG-FPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLY 314 (478)
Q Consensus 236 a~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g-~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~ 314 (478)
+++++.++++. .....|++|||+++ +.+|+.|+++.+.+.+|..++....+..+ +.. ..
T Consensus 230 a~a~~~~~~~~---------~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~--------~~~-~~-- 289 (347)
T PRK11908 230 IDALMKIIENK---------DGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKV--------KLV-ET-- 289 (347)
T ss_pred HHHHHHHHhCc---------cccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCccccccccccc--------ccc-cC--
Confidence 99999998730 11245789999987 58999999999999998543221100000 000 00
Q ss_pred hccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 315 PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
..+..... ..........|++|++++|||+|+++++++++++++|++++...
T Consensus 290 --------~~~~~~~~-~~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~~ 341 (347)
T PRK11908 290 --------TSGAYYGK-GYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVAE 341 (347)
T ss_pred --------CchhccCc-CcchhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 00000000 00001123468999999999999999999999999999876543
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=368.04 Aligned_cols=316 Identities=21% Similarity=0.252 Sum_probs=241.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEE-EEecCCCCcc-c---ccccCCCeEEEEecCCCHHHHHHHhcC--cCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVR-AFDLRTNSPW-S---HLLINHGVHCIQGDVVSKIDVEKAARG--VDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~-~l~r~~~~~~-~---~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~Vi 83 (478)
|++|||||||||||++|+++|+++|++ |+ ++++...... . .......++++.+|++|.+++.+++++ +|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSD-AVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCC-EEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 468999999999999999999999987 55 4554322110 0 001123578899999999999999984 89999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc---------CCCeEEEEeccceeeCCc--cccCCCCCCCCCCCC
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF---------GIQRLVYVSTYNVVFGGK--EIVNGNESLPYFPID 152 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~---------~v~r~V~~SS~~v~~g~~--~~~~~~E~~p~~p~~ 152 (478)
|+||......+..++...+++|+.||.+++++|++. +++++||+||.++| +.. ...+.+|+.+..|.
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vy-g~~~~~~~~~~E~~~~~p~- 157 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVY-GDLHSTDDFFTETTPYAPS- 157 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhc-CCCCCCCCCcCCCCCCCCC-
Confidence 999975544444567889999999999999999873 57899999999984 422 23457888777664
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
++|+.||.++|.++..+.. ..+++++++||++||||++. ..++.++..+..|..+.++|+|++.+||+
T Consensus 158 ---s~Y~~sK~~~e~~~~~~~~-------~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i 227 (355)
T PRK10217 158 ---SPYSASKASSDHLVRAWLR-------TYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWL 227 (355)
T ss_pred ---ChhHHHHHHHHHHHHHHHH-------HhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcC
Confidence 7899999999999988754 57899999999999999974 46677777777787777889999999999
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFY 310 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~ 310 (478)
||+|+|+++..+++. ...|++|||++++++|++|+++.+++.+|...+..+.+.... . ..+
T Consensus 228 ~v~D~a~a~~~~~~~------------~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~--~----~~~- 288 (355)
T PRK10217 228 YVEDHARALYCVATT------------GKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHY--R----DLI- 288 (355)
T ss_pred cHHHHHHHHHHHHhc------------CCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccc--c----ccc-
Confidence 999999999998873 234689999999999999999999999986543322211100 0 000
Q ss_pred HhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 311 SVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
. ..+. .+.. .....+|++|++++|||+|+++++|+++++++||+++..
T Consensus 289 -------~----~~~~-~~~~----~~~~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 289 -------T----FVAD-RPGH----DLRYAIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred -------e----ecCC-CCCC----CcccccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 0 0000 0000 112357999999999999999999999999999988754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=365.68 Aligned_cols=313 Identities=20% Similarity=0.224 Sum_probs=236.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc----ccccc------cCCCeEEEEecCCCHHHHHHHhcC--c
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP----WSHLL------INHGVHCIQGDVVSKIDVEKAARG--V 79 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~----~~~~~------~~~~v~~v~gDl~d~~~l~~~l~~--~ 79 (478)
|+|||||||||||++|+++|+++|++ |++++|+++.. ..... ...+++++++|++|.+++.+++++ +
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 79 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYE-VHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKP 79 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCE-EEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCC
Confidence 58999999999999999999999998 99999875421 00000 024589999999999999999984 6
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC---eEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ---RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~---r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
|+|||+|+.........++....++|+.||.+++++|++.+++ ++||+||.+| ||.....+.+|+.|..|. +
T Consensus 80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~v-yg~~~~~~~~E~~~~~p~----~ 154 (343)
T TIGR01472 80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSEL-YGKVQEIPQNETTPFYPR----S 154 (343)
T ss_pred CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHh-hCCCCCCCCCCCCCCCCC----C
Confidence 9999999975444344455667789999999999999998864 8999999998 554444567888887765 7
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHHHHHcCCC-CeeeCCCCccccce
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVSLAKLGLV-PFKIGEPSVKTDWI 230 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~~~~~g~~-~~~~g~g~~~~~~v 230 (478)
+|+.||.++|.+++.+.. ..++++++.|+.++|||+... .+..++..+..|.. ...+|+|++.+||+
T Consensus 155 ~Y~~sK~~~e~~~~~~~~-------~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i 227 (343)
T TIGR01472 155 PYAAAKLYAHWITVNYRE-------AYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWG 227 (343)
T ss_pred hhHHHHHHHHHHHHHHHH-------HhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCce
Confidence 899999999999988764 468899999999999997432 23445555666753 44669999999999
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCccc-------CChHHHHHHH
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSW-------LAVPHALFLG 303 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~-------lp~~~~~~~a 303 (478)
||+|+|++++.+++. + .+++|||++|+++|+.|+++.+.+.+|.+.+... .|......
T Consensus 228 ~V~D~a~a~~~~~~~-----------~--~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 292 (343)
T TIGR01472 228 HAKDYVEAMWLMLQQ-----------D--KPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKV-- 292 (343)
T ss_pred eHHHHHHHHHHHHhc-----------C--CCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCce--
Confidence 999999999998873 1 2358999999999999999999999996532110 00000000
Q ss_pred HHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHH
Q 011770 304 KVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQD 371 (478)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~ 371 (478)
.. + . ......+.++. ...+|++|++++|||+|+++++|+|+++++|+++
T Consensus 293 --------~~-~-~-----~~~~~~~~~~~----~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 293 --------HV-E-I-----DPRYFRPTEVD----LLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred --------eE-E-e-----CccccCCCccc----hhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 00 0 0 00000111111 1246999999999999999999999999999984
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=374.71 Aligned_cols=300 Identities=23% Similarity=0.256 Sum_probs=238.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+.|||||||||||||++|+++|+++|++ |++++|........ .....+++++.+|+.+. .+.++|+|||||
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~-V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~-----~~~~~D~ViHlA 192 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDE-VIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEP-----ILLEVDQIYHLA 192 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCCCccHhHhhhhccCCceEEEECccccc-----cccCCCEEEECc
Confidence 3478999999999999999999999998 99999764321111 11224688899999765 346899999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCC-----CCCCCCccCCchHhh
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESL-----PYFPIDEHVDSYGRS 161 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~-----p~~p~~~~~~~Y~~s 161 (478)
+.........++...+++|+.||.|++++|+++++ ++||+||.+| ||.....+.+|+. |..| .+.|+.|
T Consensus 193 a~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~V-Yg~~~~~p~~E~~~~~~~p~~p----~s~Yg~S 266 (436)
T PLN02166 193 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEV-YGDPLEHPQKETYWGNVNPIGE----RSCYDEG 266 (436)
T ss_pred eeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHH-hCCCCCCCCCccccccCCCCCC----CCchHHH
Confidence 97544444446778899999999999999999996 8999999998 5544444566653 3333 3789999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC----CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE----RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~----~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
|..+|++++.+.. ..+++++++||++||||++. +.++.++..+..+..+.++|++++.++|+||+|+|+
T Consensus 267 K~~aE~~~~~y~~-------~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ 339 (436)
T PLN02166 267 KRTAETLAMDYHR-------GAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVD 339 (436)
T ss_pred HHHHHHHHHHHHH-------HhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHH
Confidence 9999999998864 46899999999999999853 457788888888888888999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcc
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWL 317 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~ 317 (478)
+++.+++. ..+++|||++++++|+.|+++.+.+.+|.+.+....|.
T Consensus 340 ai~~~~~~-------------~~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~--------------------- 385 (436)
T PLN02166 340 GLVALMEG-------------EHVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPN--------------------- 385 (436)
T ss_pred HHHHHHhc-------------CCCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCC---------------------
Confidence 99988862 12459999999999999999999999987543322110
Q ss_pred ccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCC
Q 011770 318 NRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKS 376 (478)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~ 376 (478)
. ..+ .....+|++|++++|||+|+++++++++++++||+++..+.
T Consensus 386 ------~----~~~----~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~~~~~~~~ 430 (436)
T PLN02166 386 ------T----ADD----PHKRKPDISKAKELLNWEPKISLREGLPLMVSDFRNRILNE 430 (436)
T ss_pred ------C----CCC----ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHhcCc
Confidence 0 000 01235799999999999999999999999999998876654
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=392.77 Aligned_cols=327 Identities=17% Similarity=0.180 Sum_probs=248.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH-HHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID-VEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~-l~~~l~~~D~ViHlAa 87 (478)
++|+|||||||||||++|+++|+++ |++ |++++|.+.... .....++++++.+|++|.++ ++++++++|+|||+||
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~-V~~l~r~~~~~~-~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa 391 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYE-VYGLDIGSDAIS-RFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVA 391 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcE-EEEEeCCchhhh-hhcCCCceEEEeccccCcHHHHHHHhcCCCEEEECcc
Confidence 5679999999999999999999986 788 999998664211 11223468999999998655 5778899999999999
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCC---CCCCccCCchHhhHHH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSV 164 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~---~p~~~~~~~Y~~sK~~ 164 (478)
.........++...+++|+.+|.+++++|++++ +++||+||.++ ||.....+.+|+.+. .|...+.+.|+.||.+
T Consensus 392 ~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~v-yg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~~ 469 (660)
T PRK08125 392 IATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEV-YGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQL 469 (660)
T ss_pred ccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhh-cCCCCCCCcCccccccccCCCCCCccchHHHHHH
Confidence 755444445667788999999999999999998 89999999998 554444467887654 2333345789999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC----------CcHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE----------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~----------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
+|+++..+.. .++++++++||+++|||++. +.++.++..+..|..+.++|++++.+||+||+|
T Consensus 470 ~E~~~~~~~~-------~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~D 542 (660)
T PRK08125 470 LDRVIWAYGE-------KEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRD 542 (660)
T ss_pred HHHHHHHHHH-------hcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHH
Confidence 9999998864 56899999999999999853 357778888888888778899999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC-CCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhh
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF-PINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVL 313 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~-~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~ 313 (478)
+|++++.++++. .....|++|||++++ ++|++|+++.+.+.+|.+.....+|....+.
T Consensus 543 va~a~~~~l~~~---------~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~------------ 601 (660)
T PRK08125 543 GIEALFRIIENK---------DNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFR------------ 601 (660)
T ss_pred HHHHHHHHHhcc---------ccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccc------------
Confidence 999999998731 112357899999985 7999999999999999653333333211000
Q ss_pred hhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCC
Q 011770 314 YPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKS 376 (478)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~ 376 (478)
.. ........ .........+|++|++++|||+|+++++++|+++++|++++....
T Consensus 602 -~~------~~~~~~~~-~~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~~ 656 (660)
T PRK08125 602 -VV------ESSSYYGK-GYQDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDLT 656 (660)
T ss_pred -cc------cccccccc-ccccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccccc
Confidence 00 00000000 000011234799999999999999999999999999999876653
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=371.04 Aligned_cols=302 Identities=23% Similarity=0.249 Sum_probs=235.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+.|||||||||||||++|+++|+++|++ |+++++....... ......+++++.+|+.+.. +.++|+|||||
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~-----l~~~D~ViHlA 191 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPI-----LLEVDQIYHLA 191 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeCCCccchhhhhhhccCCceEEEECCccChh-----hcCCCEEEEee
Confidence 4589999999999999999999999998 9999875332111 1112356888999997753 46899999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCC--CCCCCccCCchHhhHHH
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLP--YFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p--~~p~~~~~~~Y~~sK~~ 164 (478)
+.........++...+++|+.||.|++++|++.++ ++||+||..|| +.....+.+|+.. ..|. .+.+.|+.||.+
T Consensus 192 a~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VY-g~~~~~p~~E~~~~~~~P~-~~~s~Y~~SK~~ 268 (442)
T PLN02206 192 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVY-GDPLQHPQVETYWGNVNPI-GVRSCYDEGKRT 268 (442)
T ss_pred eecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHh-CCCCCCCCCccccccCCCC-CccchHHHHHHH
Confidence 96544334446778899999999999999999996 99999999984 5443445566531 1221 124789999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC----CCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHH
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE----ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~----~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~ 240 (478)
+|+++..+.. ..+++++++||+++|||++ ...++.++..+..+..+.++|++++.+||+||+|+|++++
T Consensus 269 aE~~~~~y~~-------~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~ 341 (442)
T PLN02206 269 AETLTMDYHR-------GANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 341 (442)
T ss_pred HHHHHHHHHH-------HhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHH
Confidence 9999988754 4689999999999999984 2456778888888888888999999999999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccc
Q 011770 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRW 320 (478)
Q Consensus 241 ~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (478)
.+++. ..+++|||++++++++.|+++.+.+.+|.+......|.. .
T Consensus 342 ~a~e~-------------~~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~--------------------~-- 386 (442)
T PLN02206 342 RLMEG-------------EHVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNT--------------------E-- 386 (442)
T ss_pred HHHhc-------------CCCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCC--------------------C--
Confidence 98862 124589999999999999999999999865332221110 0
Q ss_pred cCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 321 WLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 321 ~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.. .....+|++|++++|||+|+++++|+|+++++|+++....
T Consensus 387 --~~-----------~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~~~~~~~~ 428 (442)
T PLN02206 387 --DD-----------PHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDFRQRVFG 428 (442)
T ss_pred --CC-----------ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhhc
Confidence 00 1123579999999999999999999999999999876543
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=370.23 Aligned_cols=316 Identities=20% Similarity=0.202 Sum_probs=234.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---------------------cccCCCeEEEEecC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---------------------LLINHGVHCIQGDV 66 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---------------------~~~~~~v~~v~gDl 66 (478)
..++|+||||||+||||++|+++|+++|++ |+++|+........ .....+++++.+|+
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYE-VAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 457789999999999999999999999998 99998532211000 00113688999999
Q ss_pred CCHHHHHHHhc--CcCEEEEcccCCCCchhhhc---hhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEeccceeeCCcccc
Q 011770 67 VSKIDVEKAAR--GVDCVFHVASYGMSGKEMLQ---FGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTYNVVFGGKEIV 140 (478)
Q Consensus 67 ~d~~~l~~~l~--~~D~ViHlAa~~~~~~~~~~---~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~~v~~g~~~~~ 140 (478)
+|.+.+.++++ ++|+|||+|+......+..+ ....+++|+.||.|++++|++.+++ +|||+||.+| ||... .
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~v-YG~~~-~ 200 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGE-YGTPN-I 200 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeccee-cCCCC-C
Confidence 99999999998 58999999986443333222 2455789999999999999999986 8999999998 44322 1
Q ss_pred CCCC-----------CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--------
Q 011770 141 NGNE-----------SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-------- 201 (478)
Q Consensus 141 ~~~E-----------~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-------- 201 (478)
+.+| +.+..|. .+.++|+.||.++|.++..+.. .+|++++++||++||||++.
T Consensus 201 ~~~E~~i~~~~~~~e~~~~~~~-~P~s~Yg~SK~a~E~l~~~~~~-------~~gl~~v~lR~~~vyGp~~~~~~~~~~l 272 (442)
T PLN02572 201 DIEEGYITITHNGRTDTLPYPK-QASSFYHLSKVHDSHNIAFTCK-------AWGIRATDLNQGVVYGVRTDETMMDEEL 272 (442)
T ss_pred CCcccccccccccccccccCCC-CCCCcchhHHHHHHHHHHHHHH-------hcCCCEEEEecccccCCCCccccccccc
Confidence 2222 2211121 2247899999999999988764 57999999999999999853
Q ss_pred -----------CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCC--ceEEecC
Q 011770 202 -----------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASG--QPYFVSD 268 (478)
Q Consensus 202 -----------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g--~~yni~~ 268 (478)
..++.++..+..|+.+.++|+|++.|||+||+|+|++++.+++. +...| ++||+++
T Consensus 273 i~~~~~~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~-----------~~~~g~~~i~Nigs 341 (442)
T PLN02572 273 INRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIAN-----------PAKPGEFRVFNQFT 341 (442)
T ss_pred ccccCcccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhC-----------hhhcCceeEEEeCC
Confidence 23456666777788777889999999999999999999999873 11223 5899986
Q ss_pred CCCCCHHHHHHHHHHh---cCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHh
Q 011770 269 GFPINTFEFIGPLLKT---LDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLK 345 (478)
Q Consensus 269 g~~~s~~e~~~~i~~~---lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k 345 (478)
+.+++.|+++.+.+. +|.+.+....|. +. ...+ ......|++|
T Consensus 342 -~~~si~el~~~i~~~~~~~g~~~~~~~~p~----------------------------~~-~~~~----~~~~~~d~~k 387 (442)
T PLN02572 342 -EQFSVNELAKLVTKAGEKLGLDVEVISVPN----------------------------PR-VEAE----EHYYNAKHTK 387 (442)
T ss_pred -CceeHHHHHHHHHHHHHhhCCCCCeeeCCC----------------------------Cc-cccc----ccccCccHHH
Confidence 689999999999998 886544322221 10 0000 0122468999
Q ss_pred HHHhCCCCcCC---ChHHHHHHHHHHHHHccCCCCCCc
Q 011770 346 AKDELCYVPIV---SPREGMAATISYWQDRKRKSLDGP 380 (478)
Q Consensus 346 a~~~LG~~p~~---~~~e~l~~~i~~~~~~~~~~~~~~ 380 (478)
+++ |||+|++ ++++++.++++|||++-....-.|
T Consensus 388 ~~~-LGw~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 424 (442)
T PLN02572 388 LCE-LGLEPHLLSDSLLDSLLNFAVKYKDRVDTTLILP 424 (442)
T ss_pred HHH-cCCCCCCcHHHHHHHHHHHHHHHHhhcchhhccc
Confidence 975 9999999 999999999999996665544333
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=359.63 Aligned_cols=302 Identities=19% Similarity=0.158 Sum_probs=234.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
.+|+|||||||||||++|+++|.++|++ |++++|...... ......++++.+|++|.+.+.++++++|+|||+|+..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~-V~~v~r~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~ 96 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHY-IIASDWKKNEHM--SEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAADM 96 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCE-EEEEEecccccc--ccccccceEEECCCCCHHHHHHHHhCCCEEEEccccc
Confidence 5689999999999999999999999998 999998654211 1111236788999999999999999999999999854
Q ss_pred CCc-hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCcc---ccCCCCCC--CCCCCCccCCchHhhHH
Q 011770 90 MSG-KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKE---IVNGNESL--PYFPIDEHVDSYGRSKS 163 (478)
Q Consensus 90 ~~~-~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~---~~~~~E~~--p~~p~~~~~~~Y~~sK~ 163 (478)
... ....++....+.|+.++.|++++|++.++++|||+||..+|..... ..+.+|+. |..|. +.|+.+|.
T Consensus 97 ~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~----s~Yg~sK~ 172 (370)
T PLN02695 97 GGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQ----DAYGLEKL 172 (370)
T ss_pred CCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCC----CHHHHHHH
Confidence 221 1122345567899999999999999999999999999998532221 11345543 44453 78999999
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHc-CCCCeeeCCCCccccceeHHHHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKL-GLVPFKIGEPSVKTDWIYVDNLV 236 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~-g~~~~~~g~g~~~~~~v~V~Dva 236 (478)
.+|++++.+.. ..+++++++||+++|||++. ...+.++..+.+ +..+.++|++++.++|+|++|++
T Consensus 173 ~~E~~~~~~~~-------~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a 245 (370)
T PLN02695 173 ATEELCKHYTK-------DFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECV 245 (370)
T ss_pred HHHHHHHHHHH-------HhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHH
Confidence 99999988764 47899999999999999753 134566665544 45666789999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhc
Q 011770 237 LALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPW 316 (478)
Q Consensus 237 ~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~ 316 (478)
+++..+++. ..+++||+++++++|++|+++.+.+..|.+.+....|.
T Consensus 246 ~ai~~~~~~-------------~~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~-------------------- 292 (370)
T PLN02695 246 EGVLRLTKS-------------DFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPG-------------------- 292 (370)
T ss_pred HHHHHHHhc-------------cCCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCC--------------------
Confidence 999988762 13578999999999999999999999987654433221
Q ss_pred cccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 317 LNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 317 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
... . .....|++|++++|||+|+++++++|+++++|++++..
T Consensus 293 ------~~~-~---------~~~~~d~sk~~~~lgw~p~~~l~e~i~~~~~~~~~~~~ 334 (370)
T PLN02695 293 ------PEG-V---------RGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIE 334 (370)
T ss_pred ------CCC-c---------cccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 000 0 01246999999999999999999999999999987544
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=330.89 Aligned_cols=308 Identities=21% Similarity=0.247 Sum_probs=252.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCC----CcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTN----SPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~----~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~Vi 83 (478)
++++||||+||||++.+..+..+ .+. .+.+|.-.- .........++.+++++|+.|...+...+. ++|.|+
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~-~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vi 85 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYK-FVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVI 85 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCc-EEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhh
Confidence 78999999999999999999876 445 666654211 112233456789999999999998888775 689999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceeeCCccccC-CCCCCCCCCCCccCCchHhh
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVFGGKEIVN-GNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~g~~~~~~-~~E~~p~~p~~~~~~~Y~~s 161 (478)
|.||......+..++-.....|+.+|.+++++++.. ++++|||+||..| ||+..... ..|.++..|. ++|+.|
T Consensus 86 hfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeV-YGds~~~~~~~E~s~~nPt----npyAas 160 (331)
T KOG0747|consen 86 HFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEV-YGDSDEDAVVGEASLLNPT----NPYAAS 160 (331)
T ss_pred hhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccce-ecCccccccccccccCCCC----CchHHH
Confidence 999988887777788888899999999999999999 5999999999999 45544443 3488888887 899999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLAL 239 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~ 239 (478)
|++||+.++++.. +++++++++|..+||||++.. .+|+++..+..+....+.|+|.+.|+|+||+|+++|+
T Consensus 161 KaAaE~~v~Sy~~-------sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~ 233 (331)
T KOG0747|consen 161 KAAAEMLVRSYGR-------SYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAF 233 (331)
T ss_pred HHHHHHHHHHHhh-------ccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHH
Confidence 9999999999975 799999999999999999864 7899999888899899999999999999999999999
Q ss_pred HHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccc
Q 011770 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNR 319 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~ 319 (478)
..+.++ ...|++|||+++.+.+..|+++.+.+..+...+....+.+... ..
T Consensus 234 ~~v~~K------------g~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~----------------v~- 284 (331)
T KOG0747|consen 234 KAVLEK------------GELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFF----------------VE- 284 (331)
T ss_pred HHHHhc------------CCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCccee----------------cC-
Confidence 999883 3469999999999999999999999988876554332211100 00
Q ss_pred ccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 320 WWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..|. -......|.+|++ .|||+|++++++||+.+++||.++.
T Consensus 285 ---dRp~--------nd~Ry~~~~eKik-~LGw~~~~p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 285 ---DRPY--------NDLRYFLDDEKIK-KLGWRPTTPWEEGLRKTIEWYTKNF 326 (331)
T ss_pred ---CCCc--------ccccccccHHHHH-hcCCcccCcHHHHHHHHHHHHHhhh
Confidence 1111 0112357999999 7999999999999999999998765
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=355.53 Aligned_cols=307 Identities=19% Similarity=0.202 Sum_probs=239.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc--cc--c-----ccCCCeEEEEecCCCHHHHHHHhcC-
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW--SH--L-----LINHGVHCIQGDVVSKIDVEKAARG- 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~~--~-----~~~~~v~~v~gDl~d~~~l~~~l~~- 78 (478)
.++|+||||||+||||++|+++|+++|++ |++++|+++... .. . ....+++++.+|++|.+++.+++++
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 45689999999999999999999999999 999988654210 00 0 0124588999999999999998874
Q ss_pred -cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-----eEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 79 -VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-----RLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 79 -~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-----r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|+|||+|+.........++...+++|+.||.+++++|++.+++ ++||+||.++ ||.... +.+|+.|..|.
T Consensus 83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~v-yg~~~~-~~~E~~~~~p~- 159 (340)
T PLN02653 83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEM-YGSTPP-PQSETTPFHPR- 159 (340)
T ss_pred CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHH-hCCCCC-CCCCCCCCCCC-
Confidence 69999999975544444566777899999999999999999875 8999999998 554433 67888887775
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-c----HHHHHHHHHcCCCCe-eeCCCCcc
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-H----LPRIVSLAKLGLVPF-KIGEPSVK 226 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~----~~~~i~~~~~g~~~~-~~g~g~~~ 226 (478)
++|+.||.++|++++.+.. .++++++..|+.++|||+... . +..++..+..|.... ..|++++.
T Consensus 160 ---~~Y~~sK~~~e~~~~~~~~-------~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 229 (340)
T PLN02653 160 ---SPYAVAKVAAHWYTVNYRE-------AYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDAS 229 (340)
T ss_pred ---ChhHHHHHHHHHHHHHHHH-------HcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcce
Confidence 7899999999999988764 468889999999999997542 2 334445566776554 45999999
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCC-cccCChHHHHHHHHH
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP-KSWLAVPHALFLGKV 305 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~-~~~lp~~~~~~~a~~ 305 (478)
+||+||+|+|+|++.+++. ..++.|||++|+++++.|+++.+.+.+|.+.+ ...+.
T Consensus 230 rd~i~v~D~a~a~~~~~~~-------------~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~---------- 286 (340)
T PLN02653 230 RDWGFAGDYVEAMWLMLQQ-------------EKPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEID---------- 286 (340)
T ss_pred ecceeHHHHHHHHHHHHhc-------------CCCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeC----------
Confidence 9999999999999999873 12468999999999999999999999986421 11100
Q ss_pred HHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 306 FSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
. +...+.++. ...+|++|++++|||+|+++++++|+++++||++.-.
T Consensus 287 -----------------~-~~~~~~~~~----~~~~d~~k~~~~lgw~p~~~l~~gi~~~~~~~~~~~~ 333 (340)
T PLN02653 287 -----------------P-RYFRPAEVD----NLKGDASKAREVLGWKPKVGFEQLVKMMVDEDLELAK 333 (340)
T ss_pred -----------------c-ccCCccccc----cccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 1 001111111 2246999999999999999999999999999986544
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=357.30 Aligned_cols=322 Identities=21% Similarity=0.223 Sum_probs=243.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhcC--cCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAARG--VDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViH 84 (478)
++|+||||||+||||+++++.|+++|++ |++++|+....... ......++++.+|++|.+++.+++++ +|+|||
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 4689999999999999999999999998 99999876532111 11123577899999999999999885 699999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKS 163 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~ 163 (478)
+|+......+..++...+++|+.|+.+++++|++.+ ++++|++||..+|.......+.+|+.+..|. ++|+.||.
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~----~~Y~~sK~ 157 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGH----DPYSSSKA 157 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCC----CcchhHHH
Confidence 999654444555677889999999999999999887 7899999999985322223356777766654 78999999
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC---CCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE---ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~---~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~ 240 (478)
++|.+++.+.....+....++++++++||+++|||++ .+.++.+++.+..|..+ .++++++.+||+||+|+|++++
T Consensus 158 ~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~-~~~~g~~~rd~i~v~D~a~a~~ 236 (349)
T TIGR02622 158 CAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIV-IIRNPDATRPWQHVLEPLSGYL 236 (349)
T ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCe-EECCCCcccceeeHHHHHHHHH
Confidence 9999998764311000000389999999999999985 24678888888888765 4577899999999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCceEEecCC--CCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccc
Q 011770 241 LASMGLLDDIPGQKGRPIASGQPYFVSDG--FPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLN 318 (478)
Q Consensus 241 ~a~~~l~~~~~~~~~~~~~~g~~yni~~g--~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~ 318 (478)
.++++... .+...+++|||+++ +++++.|+++.+.+.++.....+..+
T Consensus 237 ~~~~~~~~-------~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~----------------------- 286 (349)
T TIGR02622 237 LLAEKLFT-------GQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDD----------------------- 286 (349)
T ss_pred HHHHHHhh-------cCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeec-----------------------
Confidence 88874221 11233679999974 79999999999998776321111100
Q ss_pred cccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCC
Q 011770 319 RWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKS 376 (478)
Q Consensus 319 ~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~ 376 (478)
..+. .+.+. .....|++|++++|||+|+++++++++++++|+++..++.
T Consensus 287 ----~~~~-~~~~~----~~~~~d~~k~~~~lgw~p~~~l~~gi~~~i~w~~~~~~~~ 335 (349)
T TIGR02622 287 ----SDLN-HPHEA----RLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAWLRGE 335 (349)
T ss_pred ----cCCC-CCccc----ceeecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 0000 11111 1235799999999999999999999999999999876654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=356.15 Aligned_cols=312 Identities=21% Similarity=0.240 Sum_probs=238.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc-cccc---ccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP-WSHL---LINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHV 85 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~-~~~~---~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHl 85 (478)
|+|||||||||||++|+++|+++|++.|+++++..... .... .....++++.+|++|.+++.++++ ++|+|||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 47999999999999999999999976366666543211 0000 012457889999999999999997 48999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc---------CCCeEEEEeccceeeCCcc----------ccCCCCCC
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF---------GIQRLVYVSTYNVVFGGKE----------IVNGNESL 146 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~---------~v~r~V~~SS~~v~~g~~~----------~~~~~E~~ 146 (478)
|+.........+++.+.++|+.||.+++++|++. +++++||+||.++| +... ..+.+|+.
T Consensus 81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vy-g~~~~~~~~~~~~~~~~~~E~~ 159 (352)
T PRK10084 81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVY-GDLPHPDEVENSEELPLFTETT 159 (352)
T ss_pred CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhc-CCCCccccccccccCCCccccC
Confidence 9975443344456789999999999999999875 46799999999985 4311 12357777
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
++.|. +.|+.||.++|++++.+.. .++++++++||+.||||++. +.++.++..+..+..+.++|+++
T Consensus 160 ~~~p~----~~Y~~sK~~~E~~~~~~~~-------~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 228 (352)
T PRK10084 160 AYAPS----SPYSASKASSDHLVRAWLR-------TYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGD 228 (352)
T ss_pred CCCCC----ChhHHHHHHHHHHHHHHHH-------HhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCCC
Confidence 77665 7899999999999988754 47899999999999999863 46777777777777777789999
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHH
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGK 304 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~ 304 (478)
+.++|+||+|+|+++..+++. ...+++||++++++.++.|+++.+++.+|...|. ..|...
T Consensus 229 ~~~~~v~v~D~a~a~~~~l~~------------~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~-~~~~~~------ 289 (352)
T PRK10084 229 QIRDWLYVEDHARALYKVVTE------------GKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPK-ATSYRE------ 289 (352)
T ss_pred eEEeeEEHHHHHHHHHHHHhc------------CCCCceEEeCCCCcCcHHHHHHHHHHHhcccccc-ccchhh------
Confidence 999999999999999988862 2347899999999999999999999999864332 111100
Q ss_pred HHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 305 VFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
+ + .... ..|. . .....+|++|++++|||+|+++++++|+++++|++++..
T Consensus 290 --~-~----~~~~-----~~~~----~----~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 290 --Q-I----TYVA-----DRPG----H----DRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANTE 339 (352)
T ss_pred --h-c----cccc-----cCCC----C----CceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCHH
Confidence 0 0 0000 1110 0 012357999999999999999999999999999988643
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=343.66 Aligned_cols=324 Identities=24% Similarity=0.274 Sum_probs=257.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
|+|+||||+||||+++++.|+++|++ |++++|++... ......+++++++|++|.+++.++++++|+|||+|+...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~- 76 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEE-VRVLVRPTSDR--RNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYR- 76 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCE-EEEEEecCccc--cccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecc-
Confidence 47999999999999999999999998 99999876532 112234688999999999999999999999999998532
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~ 171 (478)
....++...+++|+.++.+++++|++.+++++|++||.++|.......+.+|+.+..|.. ..+.|+.+|.++|+++++
T Consensus 77 -~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~-~~~~Y~~sK~~~e~~~~~ 154 (328)
T TIGR03466 77 -LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDD-MIGHYKRSKFLAEQAALE 154 (328)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCccc-ccChHHHHHHHHHHHHHH
Confidence 122346678899999999999999999999999999999853333445678887766532 236799999999999998
Q ss_pred HcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 172 ~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
+.. ..+++++++||+.+|||++.. ....++.....+..+...+ ...+|+|++|+|++++.++++
T Consensus 155 ~~~-------~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~D~a~a~~~~~~~---- 220 (328)
T TIGR03466 155 MAA-------EKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYVD---TGLNLVHVDDVAEGHLLALER---- 220 (328)
T ss_pred HHH-------hcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCceeeC---CCcceEEHHHHHHHHHHHHhC----
Confidence 764 468999999999999998753 2334444444444333322 346899999999999999873
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
...|+.|+++ ++++++.|+++.+.+.+|.+.+...+|.+.+..++++.+.+....+ ..|..+.
T Consensus 221 --------~~~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 283 (328)
T TIGR03466 221 --------GRIGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTG--------KEPRVTV 283 (328)
T ss_pred --------CCCCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcC--------CCCCCCH
Confidence 2356788886 6899999999999999999888888999998888888777765543 3455555
Q ss_pred HHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..+.....+..+|++|++++|||+|+ +++++++++++||++++
T Consensus 284 ~~~~~~~~~~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~~ 326 (328)
T TIGR03466 284 DGVRMAKKKMFFSSAKAVRELGYRQR-PAREALRDAVEWFRANG 326 (328)
T ss_pred HHHHHHhccCCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHhC
Confidence 55555556677999999999999996 89999999999999864
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=349.04 Aligned_cols=313 Identities=24% Similarity=0.257 Sum_probs=241.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------cc--ccCCCeEEEEecCCCHHHHHHHhc--C
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HL--LINHGVHCIQGDVVSKIDVEKAAR--G 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~--~~~~~v~~v~gDl~d~~~l~~~l~--~ 78 (478)
+++++|+|||||||||++|+++|+++|++ |++++|....... .. ....+++++.+|++|.+++.++++ +
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYK-VVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 56789999999999999999999999998 9999875432100 00 112468899999999999999886 6
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCch
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSY 158 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y 158 (478)
+|+|||+|+.........++...+++|+.++.+++++|++.+++++||+||..+ |+.....+.+|+.|..|. ++|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~v-yg~~~~~~~~E~~~~~~~----~~Y 156 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATV-YGQPEEVPCTEEFPLSAT----NPY 156 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHH-hCCCCCCCCCCCCCCCCC----CHH
Confidence 899999999654333445667789999999999999999999999999999887 554455678898888775 789
Q ss_pred HhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--------C---cHHHHHHHHHcCC--CCeeeC----
Q 011770 159 GRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--------R---HLPRIVSLAKLGL--VPFKIG---- 221 (478)
Q Consensus 159 ~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--------~---~~~~~i~~~~~g~--~~~~~g---- 221 (478)
+.||..+|++++.+... ..+++++++|++++||++.. . .+..++..+..+. .+.++|
T Consensus 157 ~~sK~~~e~~~~~~~~~------~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (352)
T PLN02240 157 GRTKLFIEEICRDIHAS------DPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYP 230 (352)
T ss_pred HHHHHHHHHHHHHHHHh------cCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCC
Confidence 99999999999876531 35789999999999997531 1 1223344444443 233444
Q ss_pred --CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHH
Q 011770 222 --EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHA 299 (478)
Q Consensus 222 --~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~ 299 (478)
+|.+.++|+|++|+|++++.+++..... +...+++||+++++++|++|+++.+.+.+|.+.+....|.
T Consensus 231 ~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~-------~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~--- 300 (352)
T PLN02240 231 TKDGTGVRDYIHVMDLADGHIAALRKLFTD-------PDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPR--- 300 (352)
T ss_pred CCCCCEEEeeEEHHHHHHHHHHHHhhhhhc-------cCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCC---
Confidence 6789999999999999999988743211 1245689999999999999999999999997654432221
Q ss_pred HHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 300 LFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.+. .. .....|++|++++|||+|+++++++|+++++|++++..+
T Consensus 301 ------------------------~~~-~~-------~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~~ 344 (352)
T PLN02240 301 ------------------------RPG-DA-------EEVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPYG 344 (352)
T ss_pred ------------------------CCC-Ch-------hhhhcCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 110 00 112369999999999999999999999999999998765
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=319.85 Aligned_cols=303 Identities=23% Similarity=0.289 Sum_probs=245.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc---ccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP---WSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~---~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
..+++|+||||+||||||||+.|..+|++ |+++|...... .......+.++.+.-|+..+ ++.++|.|+|+
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~-VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~p-----l~~evD~IyhL 98 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHE-VIALDNYFTGRKENLEHWIGHPNFELIRHDVVEP-----LLKEVDQIYHL 98 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCe-EEEEecccccchhhcchhccCcceeEEEeechhH-----HHHHhhhhhhh
Confidence 45689999999999999999999999988 99999865532 11233456677777777554 77889999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCC--CCCCCccCCchHhhHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLP--YFPIDEHVDSYGRSKS 163 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p--~~p~~~~~~~Y~~sK~ 163 (478)
|+...+.....++-....+|+.||.|++-.|++.+ +||+++||+.| ||.+...|..|+.. ..| ..+++.|...|.
T Consensus 99 Aapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseV-Ygdp~~hpq~e~ywg~vnp-igpr~cydegKr 175 (350)
T KOG1429|consen 99 AAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEV-YGDPLVHPQVETYWGNVNP-IGPRSCYDEGKR 175 (350)
T ss_pred ccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccc-cCCcccCCCccccccccCc-CCchhhhhHHHH
Confidence 99877777777888999999999999999999999 69999999999 66655555555321 122 234589999999
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC----CCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE----ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLAL 239 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~----~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~ 239 (478)
.+|.++.+|++ +.|+.+.|.|+.+.|||.. .+.+..++..+.++.++.++|+|.|.|+|+||+|+++++
T Consensus 176 ~aE~L~~~y~k-------~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegl 248 (350)
T KOG1429|consen 176 VAETLCYAYHK-------QEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGL 248 (350)
T ss_pred HHHHHHHHhhc-------ccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHH
Confidence 99999999986 6899999999999999974 357788888899999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccc
Q 011770 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNR 319 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~ 319 (478)
+.+++. ..-+.+||++++.+|+.|+++.+.+..|....+...+.. +
T Consensus 249 l~Lm~s-------------~~~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~-----------------~---- 294 (350)
T KOG1429|consen 249 LRLMES-------------DYRGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENG-----------------P---- 294 (350)
T ss_pred HHHhcC-------------CCcCCcccCCccceeHHHHHHHHHHHcCCCcceeecCCC-----------------C----
Confidence 999873 123359999999999999999999998654332221100 0
Q ss_pred ccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 320 WWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.+| ..+..|++|+++.|||.|+.+++|||..++.|++++-..
T Consensus 295 ---Ddp-----------~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr~~i~~ 336 (350)
T KOG1429|consen 295 ---DDP-----------RKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFRERIAR 336 (350)
T ss_pred ---CCc-----------cccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHHHHHHH
Confidence 111 123469999999999999999999999999999876443
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=340.99 Aligned_cols=283 Identities=18% Similarity=0.159 Sum_probs=224.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~ 89 (478)
|+||||||+||||++|+++|+++| + |++++|... .+.+|++|.+.+.++++ ++|+|||||+..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~-V~~~~~~~~-------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~ 65 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-N-LIALDVHST-------------DYCGDFSNPEGVAETVRKIRPDVIVNAAAHT 65 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-C-EEEeccccc-------------cccCCCCCHHHHHHHHHhcCCCEEEECCccC
Confidence 479999999999999999999999 7 999987532 24689999999999988 589999999987
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
....+..++...+++|+.||.|++++|++.|+ ++||+||..| |++....+.+|+.+..|. ++|+.||.++|+++
T Consensus 66 ~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~V-y~~~~~~p~~E~~~~~P~----~~Yg~sK~~~E~~~ 139 (299)
T PRK09987 66 AVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYV-FPGTGDIPWQETDATAPL----NVYGETKLAGEKAL 139 (299)
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceE-ECCCCCCCcCCCCCCCCC----CHHHHHHHHHHHHH
Confidence 66656667778889999999999999999996 8999999998 566555678898887775 78999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCC--CCccccceeHHHHHHHHHHHHhccc
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGE--PSVKTDWIYVDNLVLALILASMGLL 247 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~--g~~~~~~v~V~Dva~a~~~a~~~l~ 247 (478)
+.+.. +.+++||+++|||++.++++.+++.+.+++.+.++|+ +.+.+++.++||+++++..+++.
T Consensus 140 ~~~~~-----------~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~-- 206 (299)
T PRK09987 140 QEHCA-----------KHLIFRTSWVYAGKGNNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNK-- 206 (299)
T ss_pred HHhCC-----------CEEEEecceecCCCCCCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhcc--
Confidence 87642 4699999999999887788888888888888888887 66767777888889888877652
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcC---CCCC---cccCChHHHHHHHHHHHHHHHhhhhcccccc
Q 011770 248 DDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLD---YDLP---KSWLAVPHALFLGKVFSFFYSVLYPWLNRWW 321 (478)
Q Consensus 248 ~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg---~~~~---~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (478)
+ ..+++||+++++++|+.|+++.+.+.++ .+.+ ....|....
T Consensus 207 ---------~-~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~---------------------- 254 (299)
T PRK09987 207 ---------P-EVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAY---------------------- 254 (299)
T ss_pred ---------C-CCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhc----------------------
Confidence 1 2235999999999999999999987643 3321 111111000
Q ss_pred CCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHH
Q 011770 322 LPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYW 369 (478)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~ 369 (478)
+.+.. -..+..+|++|+++.|||+|. +++++|+++++-+
T Consensus 255 -~~~~~-------rp~~~~ld~~k~~~~lg~~~~-~~~~~l~~~~~~~ 293 (299)
T PRK09987 255 -PTPAR-------RPHNSRLNTEKFQQNFALVLP-DWQVGVKRMLTEL 293 (299)
T ss_pred -CCCCC-------CCCcccCCHHHHHHHhCCCCc-cHHHHHHHHHHHH
Confidence 01100 112336899999999999985 8999999998754
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=345.71 Aligned_cols=302 Identities=22% Similarity=0.214 Sum_probs=224.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cc--cCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LL--INHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~--~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
.++|+||||||+||||++|+++|+++|++ |++++|+....... .. ...+++++.+|++|.+++.++++++|+||
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYT-VKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 46789999999999999999999999998 99998865421100 01 12358899999999999999999999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccc---cCCCCCCCCCC--CCccCCch
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEI---VNGNESLPYFP--IDEHVDSY 158 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~---~~~~E~~p~~p--~~~~~~~Y 158 (478)
|+|+... .++...+++|+.||.+++++|++.+++|+||+||...+|+.... .+.+|+.+... ...+.++|
T Consensus 87 h~A~~~~-----~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y 161 (342)
T PLN02214 87 HTASPVT-----DDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY 161 (342)
T ss_pred EecCCCC-----CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence 9998642 24567889999999999999999999999999997644653221 24677642110 11234789
Q ss_pred HhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC----cHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 159 GRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER----HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 159 ~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~----~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
+.||..+|++++.+.. ..+++++++||++||||++.. .+..++. +..|... .++ ++.++||||+|
T Consensus 162 ~~sK~~aE~~~~~~~~-------~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~-~~~g~~~-~~~--~~~~~~i~V~D 230 (342)
T PLN02214 162 CYGKMVAEQAAWETAK-------EKGVDLVVLNPVLVLGPPLQPTINASLYHVLK-YLTGSAK-TYA--NLTQAYVDVRD 230 (342)
T ss_pred HHHHHHHHHHHHHHHH-------HcCCcEEEEeCCceECCCCCCCCCchHHHHHH-HHcCCcc-cCC--CCCcCeeEHHH
Confidence 9999999999998864 468999999999999998653 2333333 3345443 233 46789999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhh
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLY 314 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~ 314 (478)
+|+++++++++ + ..++.||+++ ++.++.|+++.+.+.++.. .+|... .
T Consensus 231 va~a~~~al~~-----------~-~~~g~yn~~~-~~~~~~el~~~i~~~~~~~----~~~~~~---------------~ 278 (342)
T PLN02214 231 VALAHVLVYEA-----------P-SASGRYLLAE-SARHRGEVVEILAKLFPEY----PLPTKC---------------K 278 (342)
T ss_pred HHHHHHHHHhC-----------c-ccCCcEEEec-CCCCHHHHHHHHHHHCCCC----CCCCCC---------------c
Confidence 99999999873 1 2345899987 5789999999999998531 122110 0
Q ss_pred hccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCC
Q 011770 315 PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKS 376 (478)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~ 376 (478)
+ . ..+. .....+|++|++ +|||+| .+++|+|+++++|+++.+...
T Consensus 279 ~--~----~~~~---------~~~~~~d~~k~~-~LG~~p-~~lee~i~~~~~~~~~~~~~~ 323 (342)
T PLN02214 279 D--E----KNPR---------AKPYKFTNQKIK-DLGLEF-TSTKQSLYDTVKSLQEKGHLA 323 (342)
T ss_pred c--c----cCCC---------CCccccCcHHHH-HcCCcc-cCHHHHHHHHHHHHHHcCCCC
Confidence 0 0 0110 112247999998 599999 589999999999999887653
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=375.56 Aligned_cols=307 Identities=22% Similarity=0.301 Sum_probs=242.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCCCc-cc---ccccCCCeEEEEecCCCHHHHHHHh--cCcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSP-WS---HLLINHGVHCIQGDVVSKIDVEKAA--RGVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~~~-~~---~~~~~~~v~~v~gDl~d~~~l~~~l--~~~D 80 (478)
.++|+|||||||||||++|+++|+++ |++ |+++++..... .. .....++++++.+|++|.+.+.+++ .++|
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~-V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYK-IVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCE-EEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 45689999999999999999999998 577 99998753111 00 1112357899999999999888766 5899
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCcccc---CCCCCCCCCCCCccCC
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIV---NGNESLPYFPIDEHVD 156 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~---~~~E~~p~~p~~~~~~ 156 (478)
+|||||+......+..++..++++|+.||.+++++|++.+ ++||||+||..|| |..... ..+|+.+..|. +
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vy-g~~~~~~~~~~~E~~~~~p~----~ 157 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVY-GETDEDADVGNHEASQLLPT----N 157 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHh-CCCccccccCccccCCCCCC----C
Confidence 9999999765444444566788999999999999999987 8999999999984 433221 23566666654 7
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
+|+.||.++|++++.+.. ..+++++++||++||||++. ..++.++..+..|..+.++|++++.++|+||+|
T Consensus 158 ~Y~~sK~~aE~~v~~~~~-------~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~D 230 (668)
T PLN02260 158 PYSATKAGAEMLVMAYGR-------SYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCED 230 (668)
T ss_pred CcHHHHHHHHHHHHHHHH-------HcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHH
Confidence 899999999999988764 46899999999999999874 367788888888888888899999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhh
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLY 314 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~ 314 (478)
+|+++..+++. ...+++||+++++++++.|+++.+.+.+|.+.+.. +..
T Consensus 231 va~a~~~~l~~------------~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~-i~~------------------ 279 (668)
T PLN02260 231 VAEAFEVVLHK------------GEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKS-IKF------------------ 279 (668)
T ss_pred HHHHHHHHHhc------------CCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcce-eee------------------
Confidence 99999988863 23468999999999999999999999999753211 000
Q ss_pred hccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 315 PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
.. ..|.. .....+|++|++ +|||+|+++++|+++++++||+++..
T Consensus 280 --~~----~~p~~--------~~~~~~d~~k~~-~lGw~p~~~~~egl~~~i~w~~~~~~ 324 (668)
T PLN02260 280 --VE----NRPFN--------DQRYFLDDQKLK-KLGWQERTSWEEGLKKTMEWYTSNPD 324 (668)
T ss_pred --cC----CCCCC--------cceeecCHHHHH-HcCCCCCCCHHHHHHHHHHHHHhChh
Confidence 00 11211 123357999997 59999999999999999999998765
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=338.51 Aligned_cols=304 Identities=23% Similarity=0.266 Sum_probs=240.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCcc----cccccCCCeEEEEecCCCHHHHHHHhcC--cCEEEE
Q 011770 13 TFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPW----SHLLINHGVHCIQGDVVSKIDVEKAARG--VDCVFH 84 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~----~~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViH 84 (478)
+|+|||||||||++|+++|+++| ++ |+++++...... ......++++++.+|++|++++.+++++ +|+|||
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~ 79 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAE-VIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVH 79 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCE-EEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEE
Confidence 58999999999999999999987 56 999886432110 0111224688999999999999999987 899999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKS 163 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~ 163 (478)
+|+......+..++...+++|+.++.+++++|.+.+.+ ++||+||..+|.......+.+|+.+..|. +.|+.+|.
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~----~~Y~~sK~ 155 (317)
T TIGR01181 80 FAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPS----SPYSASKA 155 (317)
T ss_pred cccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCC----CchHHHHH
Confidence 99975444444566778899999999999999997544 89999999985333333357787776664 78999999
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALIL 241 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~ 241 (478)
.+|++++.+.. ..+++++++||+.+|||+.. ..++.++..+..+..+.+++++++.++|+|++|+++++..
T Consensus 156 ~~e~~~~~~~~-------~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~ 228 (317)
T TIGR01181 156 ASDHLVRAYHR-------TYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYL 228 (317)
T ss_pred HHHHHHHHHHH-------HhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHH
Confidence 99999987653 46899999999999999763 4677888888888877788999999999999999999998
Q ss_pred HHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccccc
Q 011770 242 ASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWW 321 (478)
Q Consensus 242 a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (478)
+++. ...|++||++++++++++|+++.+.+.+|.+.+..... .
T Consensus 229 ~~~~------------~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~----------------------~--- 271 (317)
T TIGR01181 229 VLEK------------GRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHV----------------------E--- 271 (317)
T ss_pred HHcC------------CCCCceEEeCCCCceeHHHHHHHHHHHhCCCccccccc----------------------C---
Confidence 8863 23568999999999999999999999998653221100 0
Q ss_pred CCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 322 LPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
..+. . .....+|++|++++|||+|+++++++++++++||+++..
T Consensus 272 -~~~~----~----~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~~~ 315 (317)
T TIGR01181 272 -DRPG----H----DRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDNEW 315 (317)
T ss_pred -CCcc----c----hhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhccC
Confidence 0110 0 011247999999999999999999999999999987653
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=337.30 Aligned_cols=300 Identities=28% Similarity=0.400 Sum_probs=241.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCc-CEEEEcccCCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGV-DCVFHVASYGMS 91 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~-D~ViHlAa~~~~ 91 (478)
+|||||||||||++|+++|+++|++ |++++|......... .+++++.+|++|.+...++++++ |+|||+|+....
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~ 77 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHD-VRGLDRLRDGLDPLL---SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSV 77 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCe-EEEEeCCCccccccc---cccceeeecccchHHHHHHHhcCCCEEEEccccCch
Confidence 4999999999999999999999999 999998766432111 67899999999998888888888 999999997654
Q ss_pred chhhh-chhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCC-CCCCCCCccCCchHhhHHHHHHHH
Q 011770 92 GKEML-QFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNES-LPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 92 ~~~~~-~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~-~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
..... ++..++++|+.||.|++++|++.+++++||+||.+++++.....+.+|+ .|..|. ++|+.||.++|+.+
T Consensus 78 ~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~----~~Yg~sK~~~E~~~ 153 (314)
T COG0451 78 PDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPL----NPYGVSKLAAEQLL 153 (314)
T ss_pred hhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCC----CHHHHHHHHHHHHH
Confidence 43332 3556899999999999999999999999998888886655344467888 566665 48999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHHHHHcCCC-CeeeCCCCccccceeHHHHHHHHHHHH
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVSLAKLGLV-PFKIGEPSVKTDWIYVDNLVLALILAS 243 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~~~~~g~~-~~~~g~g~~~~~~v~V~Dva~a~~~a~ 243 (478)
+.+.. .++++++++||++||||++.. ....++..+..+.. ....+++...++++|++|++++++.++
T Consensus 154 ~~~~~-------~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 226 (314)
T COG0451 154 RAYAR-------LYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLAL 226 (314)
T ss_pred HHHHH-------HhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHH
Confidence 98864 468999999999999999764 34444555677775 566678889999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCceEEecCCC-CCCHHHHHHHHHHhcCCCCCc-ccCChHHHHHHHHHHHHHHHhhhhcccccc
Q 011770 244 MGLLDDIPGQKGRPIASGQPYFVSDGF-PINTFEFIGPLLKTLDYDLPK-SWLAVPHALFLGKVFSFFYSVLYPWLNRWW 321 (478)
Q Consensus 244 ~~l~~~~~~~~~~~~~~g~~yni~~g~-~~s~~e~~~~i~~~lg~~~~~-~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (478)
++ ...+ .||+++++ +.++.|+++.+.+.+|...+. ...+.
T Consensus 227 ~~------------~~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~------------------------- 268 (314)
T COG0451 227 EN------------PDGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPL------------------------- 268 (314)
T ss_pred hC------------CCCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCC-------------------------
Confidence 83 1223 99999997 999999999999999987552 11110
Q ss_pred CCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 322 LPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
...........+|++|++++|||+|+.++++++.++++|+....
T Consensus 269 --------~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 269 --------GRRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred --------CCCCcccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 00111122345799999999999999999999999999998654
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=338.73 Aligned_cols=302 Identities=20% Similarity=0.215 Sum_probs=228.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c----ccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L----LINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~----~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
+|+||||||+||||++|+++|+++|++ |++++|++...... . ....+++++.+|++|.+++.++++++|+|||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 579999999999999999999999998 99888775432110 0 1124688999999999999999999999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceeeCCc----cccCCCCCCCCCCCC--ccCCc
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVFGGK----EIVNGNESLPYFPID--EHVDS 157 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~g~~----~~~~~~E~~p~~p~~--~~~~~ 157 (478)
+|+......+..++...+++|+.|+.+++++|.+. +++++|++||.++|++.. +..+.+|+.+..|.. .+.++
T Consensus 84 ~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~ 163 (325)
T PLN02989 84 TASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQW 163 (325)
T ss_pred eCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccccc
Confidence 99964333233345678899999999999999985 578999999998866532 234568887776632 12368
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC---cHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~---~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
|+.||..+|++++.+.. .++++++++||+++|||++.. +...++..+..|..+. + .+.++|+||+|
T Consensus 164 Y~~sK~~~E~~~~~~~~-------~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~--~--~~~r~~i~v~D 232 (325)
T PLN02989 164 YVLSKTLAEDAAWRFAK-------DNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPF--N--TTHHRFVDVRD 232 (325)
T ss_pred hHHHHHHHHHHHHHHHH-------HcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCC--C--CcCcCeeEHHH
Confidence 99999999999988764 468999999999999998753 3445555555665442 2 35689999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhh
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLY 314 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~ 314 (478)
+|++++.+++. +. .++.||++ ++++|+.|+++.+.+.++... ++.
T Consensus 233 va~a~~~~l~~-----------~~-~~~~~ni~-~~~~s~~ei~~~i~~~~~~~~----~~~------------------ 277 (325)
T PLN02989 233 VALAHVKALET-----------PS-ANGRYIID-GPVVTIKDIENVLREFFPDLC----IAD------------------ 277 (325)
T ss_pred HHHHHHHHhcC-----------cc-cCceEEEe-cCCCCHHHHHHHHHHHCCCCC----CCC------------------
Confidence 99999999873 12 24589995 668999999999999987321 100
Q ss_pred hccccccCCCCCCcHHHhhhh-cceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 315 PWLNRWWLPQPLILPAEVYKV-GVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~~~~-~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..+ +.... ......|++|+++ |||+|+++++++|+++++|+++.+
T Consensus 278 --------~~~-----~~~~~~~~~~~~~~~k~~~-lg~~p~~~l~~gi~~~~~~~~~~~ 323 (325)
T PLN02989 278 --------RNE-----DITELNSVTFNVCLDKVKS-LGIIEFTPTETSLRDTVLSLKEKC 323 (325)
T ss_pred --------CCC-----CcccccccCcCCCHHHHHH-cCCCCCCCHHHHHHHHHHHHHHhC
Confidence 000 00000 0122468999886 999999999999999999998765
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=337.12 Aligned_cols=307 Identities=21% Similarity=0.244 Sum_probs=231.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc--CcCEEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFH 84 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViH 84 (478)
|+|||||||||||++|+++|+++|++ |++++|........ .....+++++.+|++|.+++.++++ ++|+|||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh 79 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHD-VVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIH 79 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCe-EEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEE
Confidence 47999999999999999999999998 99998653321110 0112357789999999999999886 6899999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCC-CCCCccCCchHhhHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY-FPIDEHVDSYGRSKS 163 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~-~p~~~~~~~Y~~sK~ 163 (478)
+|+.........++...+++|+.++.+++++|++.+++++|++||.++ |+.....+.+|+.|. .|. +.|+.+|.
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~-yg~~~~~~~~E~~~~~~p~----~~Y~~sK~ 154 (338)
T PRK10675 80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATV-YGDQPKIPYVESFPTGTPQ----SPYGKSKL 154 (338)
T ss_pred CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHh-hCCCCCCccccccCCCCCC----ChhHHHHH
Confidence 998754333334456788999999999999999999999999999988 555445567888775 343 78999999
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--------C----cHHHHHHHHHcCC-CCeeeC------CCC
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--------R----HLPRIVSLAKLGL-VPFKIG------EPS 224 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--------~----~~~~~i~~~~~g~-~~~~~g------~g~ 224 (478)
.+|++++.+... ..+++++++|++.+|||... . +++.+.+....+. .+.++| +|+
T Consensus 155 ~~E~~~~~~~~~------~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 228 (338)
T PRK10675 155 MVEQILTDLQKA------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228 (338)
T ss_pred HHHHHHHHHHHh------cCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCc
Confidence 999999887531 34789999999999997421 1 2233333333222 233444 678
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHH
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGK 304 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~ 304 (478)
+.++|+|++|+|++++.+++... ....+++|||++++++|+.|+++.+.+.+|.+.+....|.
T Consensus 229 ~~~~~v~v~D~a~~~~~~~~~~~---------~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-------- 291 (338)
T PRK10675 229 GVRDYIHVMDLADGHVAAMEKLA---------NKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPR-------- 291 (338)
T ss_pred EEEeeEEHHHHHHHHHHHHHhhh---------ccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCC--------
Confidence 89999999999999999987311 1234579999999999999999999999997644322221
Q ss_pred HHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 305 VFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
.+ . .. ....+|++|++++|||+|+++++++++++++|++++..
T Consensus 292 -------------------~~---~-~~----~~~~~~~~k~~~~lg~~p~~~~~~~~~~~~~~~~~~~~ 334 (338)
T PRK10675 292 -------------------RE---G-DL----PAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_pred -------------------CC---C-ch----hhhhcCHHHHHHHhCCCCcCcHHHHHHHHHHHHHhhhh
Confidence 00 0 00 11246999999999999999999999999999988644
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=337.82 Aligned_cols=306 Identities=19% Similarity=0.136 Sum_probs=220.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----ccccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HLLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+++++||||||+||||++|+++|+++|++ |++++|++..... .....++++++.+|++|.+++.++++++|+||
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYA-VNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 45789999999999999999999999998 9988877543211 00111358899999999999999999999999
Q ss_pred EcccCCCCchhhhch-hhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceeeCCc---cccCCCCCCCC-----CCCCc
Q 011770 84 HVASYGMSGKEMLQF-GRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVFGGK---EIVNGNESLPY-----FPIDE 153 (478)
Q Consensus 84 HlAa~~~~~~~~~~~-~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~g~~---~~~~~~E~~p~-----~p~~~ 153 (478)
|+|+.... ...++ ...+++|+.|+.+++++|.+. +++++||+||.++|+... ...+.+|+... .....
T Consensus 86 h~A~~~~~--~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (338)
T PLN00198 86 HVATPVNF--ASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKP 163 (338)
T ss_pred EeCCCCcc--CCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCC
Confidence 99985321 11222 346789999999999999887 589999999999864322 12234443210 00112
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHH---HHHHHHcCCCCeeeC-CCCc----
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPR---IVSLAKLGLVPFKIG-EPSV---- 225 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~---~i~~~~~g~~~~~~g-~g~~---- 225 (478)
+.++|+.||.++|++++.+.. .++++++++||++||||++....+. ++..+..+....+.| ++.+
T Consensus 164 p~~~Y~~sK~~~E~~~~~~~~-------~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 236 (338)
T PLN00198 164 PTWGYPASKTLAEKAAWKFAE-------ENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSG 236 (338)
T ss_pred ccchhHHHHHHHHHHHHHHHH-------hcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccC
Confidence 347899999999999998864 4789999999999999986532222 233455566554545 3322
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHH
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKV 305 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~ 305 (478)
.+||+||+|+|++++.+++. +. .++.| ++++++.++.|+++.+.+.++.. .+|...
T Consensus 237 ~~~~i~V~D~a~a~~~~~~~-----------~~-~~~~~-~~~~~~~s~~el~~~i~~~~~~~----~~~~~~------- 292 (338)
T PLN00198 237 SISITHVEDVCRAHIFLAEK-----------ES-ASGRY-ICCAANTSVPELAKFLIKRYPQY----QVPTDF------- 292 (338)
T ss_pred CcceeEHHHHHHHHHHHhhC-----------cC-cCCcE-EEecCCCCHHHHHHHHHHHCCCC----CCCccc-------
Confidence 37999999999999999873 11 23467 56678899999999999887531 111100
Q ss_pred HHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 306 FSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
. ..|. .....+|++|+++ +||+|+++++++|+++++||++++.
T Consensus 293 ------------~----~~~~---------~~~~~~~~~k~~~-~G~~p~~~l~~gi~~~~~~~~~~~~ 335 (338)
T PLN00198 293 ------------G----DFPS---------KAKLIISSEKLIS-EGFSFEYGIEEIYDQTVEYFKAKGL 335 (338)
T ss_pred ------------c----ccCC---------CCccccChHHHHh-CCceecCcHHHHHHHHHHHHHHcCC
Confidence 0 1110 0122468999988 5999999999999999999998764
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=333.62 Aligned_cols=301 Identities=22% Similarity=0.229 Sum_probs=223.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc------ccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL------LINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~------~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
+|+|||||||||||++|+++|+++|++ |++++|+........ ...++++++++|++|++++.++++++|+|||
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYT-VKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCE-EEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 578999999999999999999999998 999988754311000 1124689999999999999999999999999
Q ss_pred cccCCCCchhhhch-hhhhHhhhHHHHHHHHHHHHc-CCCeEEEEecccee-eCCc---cccCCCCCCCCCCCC--ccCC
Q 011770 85 VASYGMSGKEMLQF-GRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVV-FGGK---EIVNGNESLPYFPID--EHVD 156 (478)
Q Consensus 85 lAa~~~~~~~~~~~-~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~-~g~~---~~~~~~E~~p~~p~~--~~~~ 156 (478)
+|+.... ...++ ...+++|+.||.|++++|.+. +++|+||+||.+++ |++. +..+.+|+.+..|.. ...+
T Consensus 83 ~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~ 160 (322)
T PLN02662 83 TASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKL 160 (322)
T ss_pred eCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccc
Confidence 9986422 12233 367899999999999999998 89999999998752 5432 223567876655521 1225
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC---cHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~---~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
.|+.||..+|++++.+.. .++++++++||+++|||+... .....+..+..|... . +++.++|+||+
T Consensus 161 ~Y~~sK~~~E~~~~~~~~-------~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~i~v~ 229 (322)
T PLN02662 161 WYVLSKTLAEEAAWKFAK-------ENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT--F--PNASYRWVDVR 229 (322)
T ss_pred hHHHHHHHHHHHHHHHHH-------HcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc--C--CCCCcCeEEHH
Confidence 799999999999988764 468999999999999998642 334444445455432 2 34679999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhh
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVL 313 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~ 313 (478)
|+|++++.+++. +.. ++.||++ |+++++.|+++.+.+.++.. .+|...
T Consensus 230 Dva~a~~~~~~~-----------~~~-~~~~~~~-g~~~s~~e~~~~i~~~~~~~----~~~~~~--------------- 277 (322)
T PLN02662 230 DVANAHIQAFEI-----------PSA-SGRYCLV-ERVVHYSEVVKILHELYPTL----QLPEKC--------------- 277 (322)
T ss_pred HHHHHHHHHhcC-----------cCc-CCcEEEe-CCCCCHHHHHHHHHHHCCCC----CCCCCC---------------
Confidence 999999999873 122 3478887 68899999999999987632 112110
Q ss_pred hhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 314 YPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.. ..+.. ....+|++|+++ |||+| .+++++++++++||++++..
T Consensus 278 ---~~----~~~~~---------~~~~~d~~k~~~-lg~~~-~~~~~~l~~~~~~~~~~~~~ 321 (322)
T PLN02662 278 ---AD----DKPYV---------PTYQVSKEKAKS-LGIEF-IPLEVSLKDTVESLKEKGFL 321 (322)
T ss_pred ---CC----ccccc---------cccccChHHHHH-hCCcc-ccHHHHHHHHHHHHHHcCCC
Confidence 00 00100 123579999985 99997 58999999999999988763
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=332.73 Aligned_cols=287 Identities=17% Similarity=0.197 Sum_probs=221.4
Q ss_pred EEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCCCC-
Q 011770 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYGMS- 91 (478)
Q Consensus 15 LVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~~~- 91 (478)
||||||||||++|++.|+++|++ |+++.++ ..+|++|.+++.++++ ++|+|||||+....
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~-v~~~~~~----------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~ 63 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFT-NLVLRTH----------------KELDLTRQADVEAFFAKEKPTYVILAAAKVGGI 63 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCc-EEEeecc----------------ccCCCCCHHHHHHHHhccCCCEEEEeeeeeccc
Confidence 69999999999999999999998 7766422 1489999999999887 57999999996432
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccC-CchHhhHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV-DSYGRSKSVAEQLVL 170 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~-~~Y~~sK~~aE~~v~ 170 (478)
.....++...+++|+.+|.+++++|++.+++++||+||..| |++....+.+|+.+......+. ..|+.||.++|++++
T Consensus 64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~v-yg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~ 142 (306)
T PLN02725 64 HANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCI-YPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQ 142 (306)
T ss_pred chhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceee-cCCCCCCCCCHHHhccCCCCCCcchHHHHHHHHHHHHH
Confidence 22334567788999999999999999999999999999998 5554556788876432111122 359999999999998
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHH----HHcCCCCee-eCCCCccccceeHHHHHHHH
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSL----AKLGLVPFK-IGEPSVKTDWIYVDNLVLAL 239 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~----~~~g~~~~~-~g~g~~~~~~v~V~Dva~a~ 239 (478)
.+.. ..+++++++||+.||||++. ..++.++.. ...+.++.. +|++++.++|+|++|+|+++
T Consensus 143 ~~~~-------~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~ 215 (306)
T PLN02725 143 AYRI-------QYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAV 215 (306)
T ss_pred HHHH-------HhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHH
Confidence 7754 46899999999999999853 244555433 345655544 78899999999999999999
Q ss_pred HHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccc
Q 011770 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNR 319 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~ 319 (478)
+.+++. ...++.||+++++++++.|+++.+.+.+|.+.+....+
T Consensus 216 ~~~~~~------------~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~------------------------ 259 (306)
T PLN02725 216 VFLMRR------------YSGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDT------------------------ 259 (306)
T ss_pred HHHHhc------------cccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecC------------------------
Confidence 998873 12345799999999999999999999998653321110
Q ss_pred ccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 320 WWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
..+. . .....+|++|++ +|||+|+++++++++++++|++++..
T Consensus 260 ---~~~~----~----~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~~~~ 302 (306)
T PLN02725 260 ---SKPD----G----TPRKLMDSSKLR-SLGWDPKFSLKDGLQETYKWYLENYE 302 (306)
T ss_pred ---CCCC----c----ccccccCHHHHH-HhCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 0010 0 012357999997 59999999999999999999997654
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=334.39 Aligned_cols=305 Identities=20% Similarity=0.178 Sum_probs=218.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc----cCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL----INHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~----~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
.+|+||||||+||||++|+++|+++|++ |++++|+....... .. ....++++.+|++|.+.+.++++++|+||
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYT-VRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 4579999999999999999999999998 99998875432110 00 11257899999999999999999999999
Q ss_pred EcccCCCCchhhhch-hhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccccC-CCCCCCCC-----CCCccC
Q 011770 84 HVASYGMSGKEMLQF-GRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIVN-GNESLPYF-----PIDEHV 155 (478)
Q Consensus 84 HlAa~~~~~~~~~~~-~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~~-~~E~~p~~-----p~~~~~ 155 (478)
|+|+..... ..++ ...+++|+.||.+++++|++.+ ++||||+||.++|++.....+ .+|+.... +...+.
T Consensus 83 H~A~~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~ 160 (351)
T PLN02650 83 HVATPMDFE--SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTG 160 (351)
T ss_pred EeCCCCCCC--CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcccccc
Confidence 999864321 1223 4678999999999999999987 789999999988655333223 35553210 111123
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-HHHHHHHH--HcCCCCeeeCCCCccccceeH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-LPRIVSLA--KLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-~~~~i~~~--~~g~~~~~~g~g~~~~~~v~V 232 (478)
++|+.||..+|++++.+.. .++++++++||++||||++... .+.++..+ ..+... .++. .+.+||+||
T Consensus 161 ~~Y~~sK~~~E~~~~~~~~-------~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~r~~v~V 231 (351)
T PLN02650 161 WMYFVSKTLAEKAAWKYAA-------ENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEA-HYSI-IKQGQFVHL 231 (351)
T ss_pred chHHHHHHHHHHHHHHHHH-------HcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCcc-ccCc-CCCcceeeH
Confidence 5899999999999998864 5799999999999999986532 22233222 223322 2332 235899999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHh
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSV 312 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~ 312 (478)
+|+|++++.+++. +. .++.| +++++++++.|+++.+.+.++.. .+|...
T Consensus 232 ~Dva~a~~~~l~~-----------~~-~~~~~-i~~~~~~s~~el~~~i~~~~~~~----~~~~~~-------------- 280 (351)
T PLN02650 232 DDLCNAHIFLFEH-----------PA-AEGRY-ICSSHDATIHDLAKMLREKYPEY----NIPARF-------------- 280 (351)
T ss_pred HHHHHHHHHHhcC-----------cC-cCceE-EecCCCcCHHHHHHHHHHhCccc----CCCCCC--------------
Confidence 9999999999873 12 23478 66678899999999999987621 111100
Q ss_pred hhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 313 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 313 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
. ..+ .+. ....+|++|++ +|||+|+++++++|+++++|+++.+..
T Consensus 281 -----~----~~~----~~~----~~~~~d~~k~~-~lG~~p~~~l~egl~~~i~~~~~~~~~ 325 (351)
T PLN02650 281 -----P----GID----EDL----KSVEFSSKKLT-DLGFTFKYSLEDMFDGAIETCREKGLI 325 (351)
T ss_pred -----C----CcC----ccc----ccccCChHHHH-HhCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 0 000 000 11246888874 799999999999999999999987755
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=330.54 Aligned_cols=289 Identities=18% Similarity=0.213 Sum_probs=211.1
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCH---HH-HHHHhc-----CcCEEEE
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK---ID-VEKAAR-----GVDCVFH 84 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~---~~-l~~~l~-----~~D~ViH 84 (478)
|||||||||||++|+++|+++|++ |+++.++..... . ...+.++|+.|. ++ ++++++ ++|+|||
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~-~v~~~~~~~~~~-~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih 74 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDGT-K-----FVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFH 74 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCc-eEEEecCCCcch-H-----HHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEE
Confidence 899999999999999999999997 665544432110 0 012234566554 33 233332 6899999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~ 164 (478)
|||..... ..++...+++|+.+|.|++++|++.++ ++||+||.+|| +.....+.+|+.+..|. ++|+.||..
T Consensus 75 ~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vy-g~~~~~~~~E~~~~~p~----~~Y~~sK~~ 146 (308)
T PRK11150 75 EGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATY-GGRTDDFIEEREYEKPL----NVYGYSKFL 146 (308)
T ss_pred CceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHh-CcCCCCCCccCCCCCCC----CHHHHHHHH
Confidence 99853322 123456789999999999999999997 79999999984 54333456777776665 789999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--c----HHHHHHHHHcCCCCeee-CCCCccccceeHHHHHH
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--H----LPRIVSLAKLGLVPFKI-GEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~----~~~~i~~~~~g~~~~~~-g~g~~~~~~v~V~Dva~ 237 (478)
+|++++++.. ..+++++++||++||||++.. . ...+...+.+|..+.++ |+++..++|+||+|+|+
T Consensus 147 ~E~~~~~~~~-------~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~ 219 (308)
T PRK11150 147 FDEYVRQILP-------EANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAA 219 (308)
T ss_pred HHHHHHHHHH-------HcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHH
Confidence 9999988864 468999999999999998632 2 23444667777765454 67778999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcc
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWL 317 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~ 317 (478)
+++.+++. ..+++||+++++++|+.|+++.+.+.+|.. +....|.
T Consensus 220 a~~~~~~~-------------~~~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~--------------------- 264 (308)
T PRK11150 220 VNLWFWEN-------------GVSGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPF--------------------- 264 (308)
T ss_pred HHHHHHhc-------------CCCCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccC---------------------
Confidence 99988873 124699999999999999999999999853 1111110
Q ss_pred ccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcC-CChHHHHHHHHHHHH
Q 011770 318 NRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPI-VSPREGMAATISYWQ 370 (478)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~-~~~~e~l~~~i~~~~ 370 (478)
+.+ ... ........|++|+++ +||+|+ .+++++++++++|+.
T Consensus 265 -----~~~-~~~----~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 265 -----PDK-LKG----RYQAFTQADLTKLRA-AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred -----ccc-ccc----ccceecccCHHHHHh-cCCCCCCCCHHHHHHHHHHHhh
Confidence 000 000 011123479999986 799997 599999999999975
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=332.76 Aligned_cols=309 Identities=19% Similarity=0.183 Sum_probs=218.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
..+|+||||||+||||++++++|+++|++ |++++|+....... .....+++++++|++|.+++.++++++|+|||+
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 86 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHV 86 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence 35679999999999999999999999998 99998765421110 011246889999999999999999999999999
Q ss_pred ccCCCCch--hhhchhh-----hhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCcc----ccCCCCCCCCCCC--
Q 011770 86 ASYGMSGK--EMLQFGR-----VDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKE----IVNGNESLPYFPI-- 151 (478)
Q Consensus 86 Aa~~~~~~--~~~~~~~-----~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~----~~~~~E~~p~~p~-- 151 (478)
|+...... ...++.. .++.|+.|+.+++++|++.+ +++|||+||.++|.+... ..+.+|+.+ .|.
T Consensus 87 A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~-~p~~~ 165 (353)
T PLN02896 87 AASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQ-TPIDH 165 (353)
T ss_pred CccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccC-CcHHH
Confidence 99754332 2223333 34556799999999999885 889999999998543221 134566522 121
Q ss_pred ----CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHH---cCCCCe--eeCC
Q 011770 152 ----DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAK---LGLVPF--KIGE 222 (478)
Q Consensus 152 ----~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~---~g~~~~--~~g~ 222 (478)
..+.++|+.||.++|+++..+.. .++++++++||++||||++...++.++..+. .|.... ..+.
T Consensus 166 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~-------~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 238 (353)
T PLN02896 166 VWNTKASGWVYVLSKLLTEEAAFKYAK-------ENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSA 238 (353)
T ss_pred hhccCCCCccHHHHHHHHHHHHHHHHH-------HcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccc
Confidence 12335899999999999998864 5789999999999999987644444333332 343211 1121
Q ss_pred ---CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHH
Q 011770 223 ---PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHA 299 (478)
Q Consensus 223 ---g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~ 299 (478)
....+|||||+|+|++++.++++ + ..++.|++ +++++++.|+++.+.+.++...+....
T Consensus 239 ~~~~~~~~dfi~v~Dva~a~~~~l~~-----------~-~~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~----- 300 (353)
T PLN02896 239 VNSRMGSIALVHIEDICDAHIFLMEQ-----------T-KAEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRL----- 300 (353)
T ss_pred cccccCceeEEeHHHHHHHHHHHHhC-----------C-CcCccEEe-cCCCCCHHHHHHHHHHhCCCCCccccc-----
Confidence 11246999999999999999873 1 12346854 578899999999999988732111110
Q ss_pred HHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 300 LFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
..+. .. ......|++|++ +|||+|+++++++|+++++|+++.+--
T Consensus 301 -----------------------~~~~--~~-----~~~~~~~~~~~~-~lGw~p~~~l~~~i~~~~~~~~~~~~~ 345 (353)
T PLN02896 301 -----------------------DEEK--RG-----SIPSEISSKKLR-DLGFEYKYGIEEIIDQTIDCCVDHGFL 345 (353)
T ss_pred -----------------------cccc--cC-----ccccccCHHHHH-HcCCCccCCHHHHHHHHHHHHHHCCCC
Confidence 0000 00 001235888886 599999999999999999999987653
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=325.15 Aligned_cols=300 Identities=21% Similarity=0.209 Sum_probs=222.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--cc----ccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HL----LINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~----~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
.+++|||||||||||++++++|+++|++ |+++.|+...... .. ....+++++.+|++|.+++.++++++|+||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYT-VKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 4689999999999999999999999998 9988876543211 00 112468999999999999999999999999
Q ss_pred EcccCCCCchhhhch-hhhhHhhhHHHHHHHHHHHHc-CCCeEEEEecccee-eCCc---cccCCCCCCCCCCC--CccC
Q 011770 84 HVASYGMSGKEMLQF-GRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVV-FGGK---EIVNGNESLPYFPI--DEHV 155 (478)
Q Consensus 84 HlAa~~~~~~~~~~~-~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~-~g~~---~~~~~~E~~p~~p~--~~~~ 155 (478)
|+|+..... ..++ ...+++|+.||.+++++|++. +++|+||+||.+++ |+.. +....+|+.+..|. ..+.
T Consensus 83 h~A~~~~~~--~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~ 160 (322)
T PLN02986 83 HTASPVFFT--VKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETK 160 (322)
T ss_pred EeCCCcCCC--CCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccc
Confidence 999964321 1122 356889999999999999986 79999999999875 3322 22346776654332 1234
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC---cHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---HLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~---~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
+.|+.||..+|++++.+.+ .++++++++||++||||+... ....++..+..|... +| ++.++||||
T Consensus 161 ~~Y~~sK~~aE~~~~~~~~-------~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~~--~~~~~~v~v 229 (322)
T PLN02986 161 NWYPLSKILAENAAWEFAK-------DNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--FN--NRFYRFVDV 229 (322)
T ss_pred cchHHHHHHHHHHHHHHHH-------HhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--CC--CcCcceeEH
Confidence 7899999999999998864 468999999999999998643 234455555566643 33 567899999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHh
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSV 312 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~ 312 (478)
+|+|++++.+++. +.. ++.||++ ++++++.|+++.+.+.++.- .+|.
T Consensus 230 ~Dva~a~~~al~~-----------~~~-~~~yni~-~~~~s~~e~~~~i~~~~~~~----~~~~---------------- 276 (322)
T PLN02986 230 RDVALAHIKALET-----------PSA-NGRYIID-GPIMSVNDIIDILRELFPDL----CIAD---------------- 276 (322)
T ss_pred HHHHHHHHHHhcC-----------ccc-CCcEEEe-cCCCCHHHHHHHHHHHCCCC----CCCC----------------
Confidence 9999999999873 223 3489995 67899999999999997631 1111
Q ss_pred hhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 313 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 313 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..+ +.+... ....+|++|+++ |||+|+ +++|+++++++|+++.+
T Consensus 277 ----------~~~---~~~~~~--~~~~~d~~~~~~-lg~~~~-~l~e~~~~~~~~~~~~~ 320 (322)
T PLN02986 277 ----------TNE---ESEMNE--MICKVCVEKVKN-LGVEFT-PMKSSLRDTILSLKEKC 320 (322)
T ss_pred ----------CCc---cccccc--cCCccCHHHHHH-cCCccc-CHHHHHHHHHHHHHHcC
Confidence 000 000000 011368999865 999997 79999999999998865
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=321.99 Aligned_cols=296 Identities=19% Similarity=0.241 Sum_probs=222.3
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc----CcCEEEEcccCC
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR----GVDCVFHVASYG 89 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~----~~D~ViHlAa~~ 89 (478)
|||||||||||+++++.|.++|++.|++++|..+.. .........+.+|+.+.+.++.+.+ ++|+|||+|+..
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~ 77 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH---KFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACS 77 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch---hhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECcccc
Confidence 699999999999999999999983398887754421 1111112456789988888777664 799999999964
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCC-CCCCccCCchHhhHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY-FPIDEHVDSYGRSKSVAEQL 168 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~-~p~~~~~~~Y~~sK~~aE~~ 168 (478)
.. ...++...+++|+.++.+++++|++.++ ++||+||.+|| +... .+.+|+.+. .| .++|+.||..+|++
T Consensus 78 ~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy-~~~~-~~~~e~~~~~~p----~~~Y~~sK~~~e~~ 148 (314)
T TIGR02197 78 DT--TETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATY-GDGE-AGFREGRELERP----LNVYGYSKFLFDQY 148 (314)
T ss_pred Cc--cccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhc-CCCC-CCcccccCcCCC----CCHHHHHHHHHHHH
Confidence 32 2345677889999999999999999997 89999999984 4332 234554432 23 37899999999999
Q ss_pred HHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeee------CCCCccccceeHHHHH
Q 011770 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKI------GEPSVKTDWIYVDNLV 236 (478)
Q Consensus 169 v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~------g~g~~~~~~v~V~Dva 236 (478)
++++... ...+++++++||+.||||++. ..+..++..+..+..+.++ |+|++.++|+|++|++
T Consensus 149 ~~~~~~~-----~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a 223 (314)
T TIGR02197 149 VRRRVLP-----EALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVV 223 (314)
T ss_pred HHHHhHh-----hccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHH
Confidence 9875321 034678999999999999864 2355666777777766554 5678889999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhc
Q 011770 237 LALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPW 316 (478)
Q Consensus 237 ~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~ 316 (478)
+++..++++ ..+++||+++++++|++|+++.+.+.+|.+.+....|.+
T Consensus 224 ~~i~~~~~~-------------~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------------- 271 (314)
T TIGR02197 224 DVNLWLLEN-------------GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMP------------------- 271 (314)
T ss_pred HHHHHHHhc-------------ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCc-------------------
Confidence 999999872 235699999999999999999999999976432222211
Q ss_pred cccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHH
Q 011770 317 LNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQ 370 (478)
Q Consensus 317 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~ 370 (478)
.... .........|++|++++|||+|+++++++++++++|++
T Consensus 272 -------~~~~-----~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 272 -------EALR-----GKYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred -------cccc-----cccccccccchHHHHHhcCCCCcccHHHHHHHHHHHHh
Confidence 0000 00011234799999999999999999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=308.42 Aligned_cols=307 Identities=25% Similarity=0.285 Sum_probs=249.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-------ccccCCCeEEEEecCCCHHHHHHHhc--CcCE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-------HLLINHGVHCIQGDVVSKIDVEKAAR--GVDC 81 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-------~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ 81 (478)
.++||||||+||||+|.+.+|+++|+. |+++|+-...... ......++.++++|++|.+.++++++ +.|.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~-v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~ 80 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYG-VVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA 80 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCc-EEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence 478999999999999999999999999 9999975543211 11123679999999999999999997 6899
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCC-CCCccCCchHh
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF-PIDEHVDSYGR 160 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~-p~~~~~~~Y~~ 160 (478)
|+|+|+....+.+..+|..++..|+.||.|++++|++++++.+|+.||+.| ||.+...|.+|+.|.. |. ++|+.
T Consensus 81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatv-YG~p~~ip~te~~~t~~p~----~pyg~ 155 (343)
T KOG1371|consen 81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATV-YGLPTKVPITEEDPTDQPT----NPYGK 155 (343)
T ss_pred EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceee-ecCcceeeccCcCCCCCCC----Ccchh
Confidence 999999888888999999999999999999999999999999999999998 7888889999999877 64 89999
Q ss_pred hHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeC--CC----CC------CcHHHHHHHHHcCCC--------Ceee
Q 011770 161 SKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYG--PG----EE------RHLPRIVSLAKLGLV--------PFKI 220 (478)
Q Consensus 161 sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyG--p~----~~------~~~~~~i~~~~~g~~--------~~~~ 220 (478)
||...|+++..++. ..+..++.||.++++| |. +. +.+| .+..+.-|.. .+..
T Consensus 156 tK~~iE~i~~d~~~-------~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p-~v~~vaigr~~~l~v~g~d~~t 227 (343)
T KOG1371|consen 156 TKKAIEEIIHDYNK-------AYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLP-YVFQVAIGRRPNLQVVGRDYTT 227 (343)
T ss_pred hhHHHHHHHHhhhc-------cccceEEEEEeccccCccccCccCCCCccCcccccc-cccchhhcccccceeecCcccc
Confidence 99999999998875 4569999999999999 32 11 1222 1222222221 1223
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHH
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHAL 300 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~ 300 (478)
.+|+..++++|+-|+|++++.|+.++... ..-.+||++++.+.+..|+++.+.+.+|.+.|...+|.
T Consensus 228 ~dgt~vrdyi~v~Dla~~h~~al~k~~~~---------~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~---- 294 (343)
T KOG1371|consen 228 IDGTIVRDYIHVLDLADGHVAALGKLRGA---------AEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPR---- 294 (343)
T ss_pred cCCCeeecceeeEehHHHHHHHhhccccc---------hheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCC----
Confidence 45689999999999999999999864432 22339999999999999999999999999877643331
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 301 FLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.+.++ ...+.+.+++++||||+|.+++++++++.++|..++..+
T Consensus 295 ---------------------------R~gdv----~~~ya~~~~a~~elgwk~~~~iee~c~dlw~W~~~np~g 338 (343)
T KOG1371|consen 295 ---------------------------RNGDV----AFVYANPSKAQRELGWKAKYGLQEMLKDLWRWQKQNPSG 338 (343)
T ss_pred ---------------------------CCCCc----eeeeeChHHHHHHhCCccccCHHHHHHHHHHHHhcCCCc
Confidence 11111 134679999999999999999999999999999988775
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=313.54 Aligned_cols=282 Identities=22% Similarity=0.231 Sum_probs=219.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCc--CEEEEcccCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGV--DCVFHVASYGM 90 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~--D~ViHlAa~~~ 90 (478)
+|||||||||||++++++|+++|++ |++++|+ .+|+.|.+++.++++++ |+|||+|+...
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~-v~~~~r~-----------------~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~ 62 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRV-VVALTSS-----------------QLDLTDPEALERLLRAIRPDAVVNTAAYTD 62 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCE-EEEeCCc-----------------ccCCCCHHHHHHHHHhCCCCEEEECCcccc
Confidence 5899999999999999999999998 9999764 47999999999999865 99999999654
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
......++...+++|+.++.+++++|++.+. ++||+||.+| |++....+.+|+.+..|. +.|+.+|..+|+.++
T Consensus 63 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~v-y~~~~~~~~~E~~~~~~~----~~Y~~~K~~~E~~~~ 136 (287)
T TIGR01214 63 VDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYV-FDGEGKRPYREDDATNPL----NVYGQSKLAGEQAIR 136 (287)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeee-ecCCCCCCCCCCCCCCCc----chhhHHHHHHHHHHH
Confidence 3333345567889999999999999999886 9999999988 455455678888776664 789999999999997
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCC-CCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGE-ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~-~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
.+ +++++++||+.||||++ ..++..++..+..+..+...++ +.++++|++|+|+++..+++.
T Consensus 137 ~~-----------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~Dva~a~~~~~~~---- 199 (287)
T TIGR01214 137 AA-----------GPNALIVRTSWLYGGGGGRNFVRTMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALLQR---- 199 (287)
T ss_pred Hh-----------CCCeEEEEeeecccCCCCCCHHHHHHHHhhcCCCceEecC--CCcCCcCHHHHHHHHHHHHhh----
Confidence 64 45799999999999986 3456677777777766555554 678999999999999999873
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
+...+++||+++++++++.|+++.+.+.+|.+.....+|... +.....+ ..+...
T Consensus 200 -------~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~----------------~~~~~~~-~~~~~~- 254 (287)
T TIGR01214 200 -------LARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVK----------------PISSKEY-PRPARR- 254 (287)
T ss_pred -------ccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeE----------------eecHHHc-CCCCCC-
Confidence 224577999999999999999999999999765433222100 0000000 011000
Q ss_pred HHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHH
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATIS 367 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~ 367 (478)
.....+|++|++++||| +..+++++++++++
T Consensus 255 ------~~~~~~d~~~~~~~lg~-~~~~~~~~l~~~~~ 285 (287)
T TIGR01214 255 ------PAYSVLDNTKLVKTLGT-PLPHWREALRAYLQ 285 (287)
T ss_pred ------CCccccchHHHHHHcCC-CCccHHHHHHHHHh
Confidence 12346899999999999 55689999998875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=313.37 Aligned_cols=304 Identities=22% Similarity=0.251 Sum_probs=231.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc---cCCCeEEEEecCCCHHHHHHHhc--CcCEEEEccc
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL---INHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVAS 87 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~---~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa 87 (478)
+|||||||||||++++++|+++|++ |+++++.......... ...+++++.+|++|.+++.++++ ++|+|||+|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag 79 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHE-VVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG 79 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCe-EEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence 5899999999999999999999998 9988764332111111 11257789999999999999886 6999999999
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~ 167 (478)
.........++...+++|+.++.+++++|.+.+++++|++||..+ |+.....+.+|+.+..|. +.|+.+|..+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~-~g~~~~~~~~e~~~~~~~----~~y~~sK~~~e~ 154 (328)
T TIGR01179 80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAV-YGEPSSIPISEDSPLGPI----NPYGRSKLMSER 154 (328)
T ss_pred ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhh-cCCCCCCCccccCCCCCC----CchHHHHHHHHH
Confidence 754444444566788999999999999999999999999999987 455444567888777664 789999999999
Q ss_pred HHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----------cHHHHHHHHH-cCCCCeee------CCCCccccc
Q 011770 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----------HLPRIVSLAK-LGLVPFKI------GEPSVKTDW 229 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----------~~~~~i~~~~-~g~~~~~~------g~g~~~~~~ 229 (478)
++..+... ..+++++++||+.+|||.... .++.+..... ....+..+ +++++.++|
T Consensus 155 ~~~~~~~~------~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (328)
T TIGR01179 155 ILRDLSKA------DPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDY 228 (328)
T ss_pred HHHHHHHh------ccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEee
Confidence 99887541 268999999999999986421 2333433333 22222222 356788999
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHH
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~ 309 (478)
||++|+++++..+++.... ...+++||+++++++|++|+++.+.+.+|.+.+....|...
T Consensus 229 v~~~D~a~~~~~~~~~~~~---------~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~----------- 288 (328)
T TIGR01179 229 IHVMDLADAHLAALEYLLN---------GGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRP----------- 288 (328)
T ss_pred eeHHHHHHHHHHHHhhhhc---------CCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCC-----------
Confidence 9999999999999873211 23568999999999999999999999999765432211100
Q ss_pred HHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCC-hHHHHHHHHHHHHHc
Q 011770 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVS-PREGMAATISYWQDR 372 (478)
Q Consensus 310 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~-~~e~l~~~i~~~~~~ 372 (478)
..+ .....|++|++++|||+|+++ ++++++++++|++++
T Consensus 289 -------------~~~-----------~~~~~~~~~~~~~lg~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 289 -------------GDP-----------ASLVADASKIRRELGWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred -------------ccc-----------cchhcchHHHHHHhCCCCCcchHHHHHHHHHHHHhcC
Confidence 000 122468999999999999997 999999999999864
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=302.69 Aligned_cols=305 Identities=22% Similarity=0.188 Sum_probs=222.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
.+++|+||||+||||++++++|+++||. |++..|++..... .....++.+.+++|++|++++.++++|||.||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf 83 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-VRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF 83 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE-EEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence 6789999999999999999999999999 9999998775211 11234458999999999999999999999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCC-c---cccCCCCCCCCCCC--CccCC
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGG-K---EIVNGNESLPYFPI--DEHVD 156 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~-~---~~~~~~E~~p~~p~--~~~~~ 156 (478)
|+|+........ ...+..+.+|.||.|++++|++.. |+|+||+||.++.... + +....||+.--.+. .....
T Consensus 84 H~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~ 162 (327)
T KOG1502|consen 84 HTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKL 162 (327)
T ss_pred EeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHH
Confidence 999975443332 334788999999999999999998 9999999999887543 2 23345665432211 01125
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---HHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
.|..||..||+..+++.. +.+++.+++-|+.|+||..... .........+|..... .+....||||+
T Consensus 163 ~Y~~sK~lAEkaAw~fa~-------e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~---~n~~~~~VdVr 232 (327)
T KOG1502|consen 163 WYALSKTLAEKAAWEFAK-------ENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETY---PNFWLAFVDVR 232 (327)
T ss_pred HHHHHHHHHHHHHHHHHH-------hCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccC---CCCceeeEeHH
Confidence 799999999999999986 5799999999999999987652 2334444556643322 23344599999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhh
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVL 313 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~ 313 (478)
|+|.|++.|++ .+.+.| .|.+.+ +..++.|+++.+.+.+.. ..+|..-
T Consensus 233 DVA~AHv~a~E-----------~~~a~G-Ryic~~-~~~~~~ei~~~l~~~~P~----~~ip~~~--------------- 280 (327)
T KOG1502|consen 233 DVALAHVLALE-----------KPSAKG-RYICVG-EVVSIKEIADILRELFPD----YPIPKKN--------------- 280 (327)
T ss_pred HHHHHHHHHHc-----------CcccCc-eEEEec-CcccHHHHHHHHHHhCCC----CCCCCCC---------------
Confidence 99999999998 344544 676665 555688888888876542 2233110
Q ss_pred hhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 314 YPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
.+ . .++... ...++++|+++++|++... ++|++.++++++++.+.
T Consensus 281 ---~~-~--~~~~~~---------~~~~~~~k~k~lg~~~~~~-l~e~~~dt~~sl~~~~~ 325 (327)
T KOG1502|consen 281 ---AE-E--HEGFLT---------SFKVSSEKLKSLGGFKFRP-LEETLSDTVESLREKGL 325 (327)
T ss_pred ---Cc-c--cccccc---------ccccccHHHHhcccceecC-hHHHHHHHHHHHHHhcC
Confidence 00 0 011111 1236899998865576655 99999999999998764
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=319.22 Aligned_cols=297 Identities=20% Similarity=0.212 Sum_probs=223.9
Q ss_pred CCCCeEEEE----cCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---------cccCCCeEEEEecCCCHHHHHHH
Q 011770 9 IEGKTFLVT----GGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---------LLINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 9 ~~~~~ILVT----GatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---------~~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
.++++|||| |||||||++|+++|+++|++ |++++|+....... .....+++++.+|+.|.+++. .
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~-V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~-~ 127 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHE-VTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV-A 127 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCE-EEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh-c
Confidence 456789999 99999999999999999998 99999976531100 111246899999998733322 2
Q ss_pred hcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 76 ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 76 l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
..++|+|||+++. +..++.+++++|++.|++||||+||.++ |+.....+.+|+.+..|.
T Consensus 128 ~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~v-yg~~~~~p~~E~~~~~p~---- 186 (378)
T PLN00016 128 GAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGV-YKKSDEPPHVEGDAVKPK---- 186 (378)
T ss_pred cCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhh-cCCCCCCCCCCCCcCCCc----
Confidence 2579999999752 2457889999999999999999999998 554444456676665542
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
. +|..+|+++.+ .+++++++||+.+|||++.. ....++..+..|..+.++|++++.++|+|++|
T Consensus 187 ---~-sK~~~E~~l~~-----------~~l~~~ilRp~~vyG~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~D 251 (378)
T PLN00016 187 ---A-GHLEVEAYLQK-----------LGVNWTSFRPQYIYGPGNNKDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKD 251 (378)
T ss_pred ---c-hHHHHHHHHHH-----------cCCCeEEEeceeEECCCCCCchHHHHHHHHHcCCceeecCCCCeeeceecHHH
Confidence 2 89999998753 47899999999999998654 34556677778887777899999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhh
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLY 314 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~ 314 (478)
+|++++.+++. +...|++||+++++++++.|+++.+.+.+|.+......+.... +. +
T Consensus 252 va~ai~~~l~~-----------~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~-------~~-----~ 308 (378)
T PLN00016 252 LASMFALVVGN-----------PKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAV-------GF-----G 308 (378)
T ss_pred HHHHHHHHhcC-----------ccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCcccc-------Cc-----c
Confidence 99999999872 3345789999999999999999999999998654332221100 00 0
Q ss_pred hccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCCCCC
Q 011770 315 PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKSLDG 379 (478)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~~~~ 379 (478)
. +...|.. ....+.|++|++++|||+|+++++|+|+++++||++++..+.+.
T Consensus 309 ---~--~~~~p~~--------~~~~~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~~~~~~ 360 (378)
T PLN00016 309 ---A--KKAFPFR--------DQHFFASPRKAKEELGWTPKFDLVEDLKDRYELYFGRGRDRKEA 360 (378)
T ss_pred ---c--ccccccc--------ccccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCcccc
Confidence 0 0001110 11224699999999999999999999999999999988875443
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=308.62 Aligned_cols=282 Identities=25% Similarity=0.250 Sum_probs=209.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~ 89 (478)
||||||||+|+||++|.++|.++|++ |++++|. ..|++|.+++.+.++ ++|+||||||+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~-----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~ 62 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYE-VIATSRS-----------------DLDLTDPEAVAKLLEAFKPDVVINCAAYT 62 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT-----------------CS-TTSHHHHHHHHHHH--SEEEE-----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch-----------------hcCCCCHHHHHHHHHHhCCCeEeccceee
Confidence 68999999999999999999999988 9998654 479999999999887 589999999998
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
....++.+++..+++|+.++.++.++|.+.|+ ++||+||..| |++....+.+|+++..|. +.||++|+++|+.+
T Consensus 63 ~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~V-FdG~~~~~y~E~d~~~P~----~~YG~~K~~~E~~v 136 (286)
T PF04321_consen 63 NVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYV-FDGDKGGPYTEDDPPNPL----NVYGRSKLEGEQAV 136 (286)
T ss_dssp -HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGG-S-SSTSSSB-TTS----S----SHHHHHHHHHHHHH
T ss_pred cHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEE-EcCCcccccccCCCCCCC----CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999997 9999999999 666666778999888886 89999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
++... +.+|+|++.+||+...+++..+++.+.+++.+.++. ++.++++|++|+|+++..++++...+
T Consensus 137 ~~~~~-----------~~~IlR~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~--d~~~~p~~~~dlA~~i~~l~~~~~~~ 203 (286)
T PF04321_consen 137 RAACP-----------NALILRTSWVYGPSGRNFLRWLLRRLRQGEPIKLFD--DQYRSPTYVDDLARVILELIEKNLSG 203 (286)
T ss_dssp HHH-S-----------SEEEEEE-SEESSSSSSHHHHHHHHHHCTSEEEEES--SCEE--EEHHHHHHHHHHHHHHHHH-
T ss_pred HHhcC-----------CEEEEecceecccCCCchhhhHHHHHhcCCeeEeeC--CceeCCEEHHHHHHHHHHHHHhcccc
Confidence 87542 689999999999977788889999999998877665 47899999999999999999853221
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcc-cCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCc
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKS-WLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLIL 328 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~-~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~ 328 (478)
....++||+++++.+|..|+++.+++.+|.+.+.+ ..+. .+.
T Consensus 204 --------~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~--------------------------~~~--- 246 (286)
T PF04321_consen 204 --------ASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSS--------------------------SEF--- 246 (286)
T ss_dssp --------GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESS--------------------------TTS---
T ss_pred --------cccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEeccc--------------------------ccC---
Confidence 22357999999999999999999999999876332 2211 000
Q ss_pred HHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHH
Q 011770 329 PAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYW 369 (478)
Q Consensus 329 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~ 369 (478)
........+..+|++|+++.||.+|.. ++++|+++++-|
T Consensus 247 -~~~~~rp~~~~L~~~kl~~~~g~~~~~-~~~~l~~~~~~~ 285 (286)
T PF04321_consen 247 -PRAAPRPRNTSLDCRKLKNLLGIKPPP-WREGLEELVKQY 285 (286)
T ss_dssp -TTSSGS-SBE-B--HHHHHCTTS---B-HHHHHHHHHHHH
T ss_pred -CCCCCCCCcccccHHHHHHccCCCCcC-HHHHHHHHHHHh
Confidence 000112235578999999999999966 999999998755
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=315.09 Aligned_cols=297 Identities=17% Similarity=0.115 Sum_probs=211.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cc--------cCCCeEEEEecCCCHHHHHHHhcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LL--------INHGVHCIQGDVVSKIDVEKAARG 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~--------~~~~v~~v~gDl~d~~~l~~~l~~ 78 (478)
.+++|+||||||+||||++|+++|+++|++ |+++.|+....... .. ...+++++++|++|.+++.+++++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~-V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYS-VRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 467889999999999999999999999998 99887754321100 00 013588999999999999999999
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccc-eeeCC--ccc--cCCCCCCCCCC--
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYN-VVFGG--KEI--VNGNESLPYFP-- 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~-v~~g~--~~~--~~~~E~~p~~p-- 150 (478)
+|+|||+|+...............++|+.+|.+++++|++. +++|+||+||.. .+|+. ... ...+|+.+...
T Consensus 129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~ 208 (367)
T PLN02686 129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESF 208 (367)
T ss_pred ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhh
Confidence 99999999964332211122456789999999999999986 799999999974 22442 111 23556543211
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...+.++|+.||..+|++++.+.. ..+++++++||++||||++....+..+..+..|. ..++|++. ++|+
T Consensus 209 ~~~p~~~Y~~sK~~~E~~~~~~~~-------~~gl~~v~lRp~~vyGp~~~~~~~~~~~~~~~g~-~~~~g~g~--~~~v 278 (367)
T PLN02686 209 CRDNKLWYALGKLKAEKAAWRAAR-------GKGLKLATICPALVTGPGFFRRNSTATIAYLKGA-QEMLADGL--LATA 278 (367)
T ss_pred cccccchHHHHHHHHHHHHHHHHH-------hcCceEEEEcCCceECCCCCCCCChhHHHHhcCC-CccCCCCC--cCeE
Confidence 112346899999999999988764 4689999999999999986432222222344554 34566654 5799
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFY 310 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~ 310 (478)
||+|+|+|++++++... +...+++| |++++++++.|+++.+.+.+|.+.+....|.
T Consensus 279 ~V~Dva~A~~~al~~~~---------~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~-------------- 334 (367)
T PLN02686 279 DVERLAEAHVCVYEAMG---------NKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNS-------------- 334 (367)
T ss_pred EHHHHHHHHHHHHhccC---------CCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCch--------------
Confidence 99999999999987311 12346678 8889999999999999999997644322211
Q ss_pred HhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChH
Q 011770 311 SVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPR 359 (478)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~ 359 (478)
. .+.+. .....|++|++++|||+|+..++
T Consensus 335 -------------~---~~~d~----~~~~~d~~kl~~~l~~~~~~~~~ 363 (367)
T PLN02686 335 -------------S---SDDTP----ARFELSNKKLSRLMSRTRRCCYD 363 (367)
T ss_pred -------------h---hcCCc----ccccccHHHHHHHHHHhhhcccc
Confidence 0 00011 12356999999999999986544
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=305.64 Aligned_cols=279 Identities=20% Similarity=0.275 Sum_probs=214.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCccc--ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWS--HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~--~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
+++|+||||||+||||++|+++|+++| ++ |++++|+...... ......+++++.+|++|.+++.++++++|+|||
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~-V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih 80 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKK-IIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVH 80 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcE-EEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEE
Confidence 356899999999999999999999986 66 9999876542110 011124688999999999999999999999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~ 164 (478)
+||.........++...+++|+.|+.+++++|++.+++++|++||... ..| .++|+.||..
T Consensus 81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~---------------~~p----~~~Y~~sK~~ 141 (324)
T TIGR03589 81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA---------------ANP----INLYGATKLA 141 (324)
T ss_pred CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC---------------CCC----CCHHHHHHHH
Confidence 999754333444567789999999999999999999999999999532 123 2679999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
+|++++.+... . ...|++++++||++||||++ ..++.+.+.+..|......+++++.++|+||+|+|++++.+++
T Consensus 142 ~E~l~~~~~~~-~---~~~gi~~~~lR~g~v~G~~~-~~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~ 216 (324)
T TIGR03589 142 SDKLFVAANNI-S---GSKGTRFSVVRYGNVVGSRG-SVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLE 216 (324)
T ss_pred HHHHHHHHHhh-c---cccCcEEEEEeecceeCCCC-CcHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHh
Confidence 99999764311 0 14799999999999999975 4677777777777633345678889999999999999999987
Q ss_pred cccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCC
Q 011770 245 GLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQ 324 (478)
Q Consensus 245 ~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 324 (478)
+ ...|++| +++++..++.|+++.+.+..+... .| ..
T Consensus 217 ~------------~~~~~~~-~~~~~~~sv~el~~~i~~~~~~~~----~~---------------------------~~ 252 (324)
T TIGR03589 217 R------------MLGGEIF-VPKIPSMKITDLAEAMAPECPHKI----VG---------------------------IR 252 (324)
T ss_pred h------------CCCCCEE-ccCCCcEEHHHHHHHHHhhCCeeE----eC---------------------------CC
Confidence 3 1246677 577788999999999988653321 00 11
Q ss_pred CCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHH
Q 011770 325 PLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMA 363 (478)
Q Consensus 325 p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~ 363 (478)
|. .+ .. ....|.+|++++|||+|++++++++.
T Consensus 253 ~g-~~--~~----~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 253 PG-EK--LH----EVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred CC-ch--hH----hhhcChhhhhhhcCCCCeEEEccccc
Confidence 10 00 00 01369999999999999999999986
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=304.13 Aligned_cols=299 Identities=15% Similarity=0.134 Sum_probs=227.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
|+|+|||||||||++|+++|+++|++ |++++|+.+.. ......+++++.+|++|++++.++++++|+|||+++...
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~R~~~~~--~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~- 76 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQ-VRCLVRNLRKA--SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRP- 76 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCe-EEEEEcChHHh--hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC-
Confidence 48999999999999999999999998 99999875421 112345799999999999999999999999999986321
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~ 171 (478)
.++....++|+.++.|++++|++.|++|+||+||.++. + + + .++|..+|..+|+++.+
T Consensus 77 ----~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~----------~---~-~----~~~~~~~K~~~e~~l~~ 134 (317)
T CHL00194 77 ----SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAE----------Q---Y-P----YIPLMKLKSDIEQKLKK 134 (317)
T ss_pred ----CCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccccc----------c---c-C----CChHHHHHHHHHHHHHH
Confidence 23456788999999999999999999999999996431 0 0 1 14589999999998853
Q ss_pred HcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCC
Q 011770 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251 (478)
Q Consensus 172 ~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~ 251 (478)
.+++++++||+.+|+.- +......+..+.+. ..+++++.++|+|++|+|+++..+++
T Consensus 135 -----------~~l~~tilRp~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~Dva~~~~~~l~------- 191 (317)
T CHL00194 135 -----------SGIPYTIFRLAGFFQGL----ISQYAIPILEKQPI-WITNESTPISYIDTQDAAKFCLKSLS------- 191 (317)
T ss_pred -----------cCCCeEEEeecHHhhhh----hhhhhhhhccCCce-EecCCCCccCccCHHHHHHHHHHHhc-------
Confidence 57899999999998642 11111122234433 33556778899999999999999886
Q ss_pred CCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHH
Q 011770 252 GQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAE 331 (478)
Q Consensus 252 ~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 331 (478)
.+...|++||+++++++|+.|+++.+.+.+|.+.+...+|.++....+.+.+.+..... ....+....
T Consensus 192 ----~~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~ 259 (317)
T CHL00194 192 ----LPETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWN--------ISDRLAFVE 259 (317)
T ss_pred ----CccccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchh--------hHHHHHHHH
Confidence 23456889999999999999999999999999888888999988887777664421100 111122223
Q ss_pred hhhhcceeEechHhHHHhCCCCcC--CChHHHHHHHHHHHHH
Q 011770 332 VYKVGVTHYFSLLKAKDELCYVPI--VSPREGMAATISYWQD 371 (478)
Q Consensus 332 ~~~~~~~~~~d~~ka~~~LG~~p~--~~~~e~l~~~i~~~~~ 371 (478)
+.....+..++.+++++.||+.|. .++++++++.++-...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~ 301 (317)
T CHL00194 260 ILNTSNNFSSSMAELYKIFKIDPNELISLEDYFQEYFERILK 301 (317)
T ss_pred HHhcCCCcCCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHHH
Confidence 333444445688899999999995 5799999888776544
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=281.33 Aligned_cols=275 Identities=23% Similarity=0.212 Sum_probs=230.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYGM 90 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~~ 90 (478)
+|||||++|++|++|++.|. .+++ |+++++.+ .|++|++.+.++++ ++|+|||+||++.
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~-v~a~~~~~-----------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~ 62 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFE-VIATDRAE-----------------LDITDPDAVLEVIRETRPDVVINAAAYTA 62 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCce-EEeccCcc-----------------ccccChHHHHHHHHhhCCCEEEECccccc
Confidence 49999999999999999998 6677 99997653 79999999999998 5799999999999
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
.+.++.+++..+.+|..|+.|+.++|.+.|. ++||+||..| |+|....+..|+++..|. +.||+||+++|+.++
T Consensus 63 vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyV-FDG~~~~~Y~E~D~~~P~----nvYG~sKl~GE~~v~ 136 (281)
T COG1091 63 VDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYV-FDGEKGGPYKETDTPNPL----NVYGRSKLAGEEAVR 136 (281)
T ss_pred cccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceE-ecCCCCCCCCCCCCCCCh----hhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999998 9999999999 777777889999999987 899999999999998
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~ 250 (478)
++. -+..|+|.+.+||....+++..+++....|..+.+.. ++..+++|+.|+|+++..+++.
T Consensus 137 ~~~-----------~~~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~--Dq~gsPt~~~dlA~~i~~ll~~----- 198 (281)
T COG1091 137 AAG-----------PRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELLEK----- 198 (281)
T ss_pred HhC-----------CCEEEEEeeeeecCCCCCHHHHHHHHhhcCCceEEEC--CeeeCCccHHHHHHHHHHHHhc-----
Confidence 764 3588999999999988888889999999998876665 5889999999999999998873
Q ss_pred CCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcc-cCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 251 PGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKS-WLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 251 ~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~-~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
...+.+||+++...+|+.||++.|.+.++.+.... ..+.. .+ +.+.
T Consensus 199 -------~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~------------------~~-----~~~a--- 245 (281)
T COG1091 199 -------EKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASA------------------EY-----PTPA--- 245 (281)
T ss_pred -------cccCcEEEEeCCCcccHHHHHHHHHHHhCCCcccccccccc------------------cc-----CccC---
Confidence 22344999999888999999999999998664222 11100 00 0000
Q ss_pred HHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHH
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISY 368 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~ 368 (478)
....+..+|+.|+++.+|+.|.. ++++++++++.
T Consensus 246 ----~RP~~S~L~~~k~~~~~g~~~~~-w~~~l~~~~~~ 279 (281)
T COG1091 246 ----KRPANSSLDTKKLEKAFGLSLPE-WREALKALLDE 279 (281)
T ss_pred ----CCCcccccchHHHHHHhCCCCcc-HHHHHHHHHhh
Confidence 01123358999999999998887 99999888764
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=286.85 Aligned_cols=229 Identities=30% Similarity=0.459 Sum_probs=195.9
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCc--CEEEEcccCCCC
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGV--DCVFHVASYGMS 91 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~--D~ViHlAa~~~~ 91 (478)
|||||||||||++|+++|+++|++ |+.+.|++...... ....+++++.+|+.|.+.+.+++++. |+|||+|+....
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~-~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~ 78 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE-VIVLSRSSNSESFE-EKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSN 78 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE-EEEEESCSTGGHHH-HHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc-cccccccccccccc-cccceEEEEEeeccccccccccccccCceEEEEeeccccc
Confidence 799999999999999999999999 99998877643211 11128999999999999999999865 999999997543
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~ 171 (478)
.....+....++.|+.++.+++++|.+.+++++||+||..+ |+.....+.+|+.+..|. ++|+.+|..+|++++.
T Consensus 79 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~-y~~~~~~~~~e~~~~~~~----~~Y~~~K~~~e~~~~~ 153 (236)
T PF01370_consen 79 PESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASV-YGDPDGEPIDEDSPINPL----SPYGASKRAAEELLRD 153 (236)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGG-GTSSSSSSBETTSGCCHS----SHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc----cccccccccccccccc
Confidence 33445677889999999999999999999999999999988 565566677888887665 7899999999999998
Q ss_pred HcCCCCccCCCCcceEEEEeCCceeCCC-----CCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcc
Q 011770 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPG-----EERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGL 246 (478)
Q Consensus 172 ~~~~~~~~~~~~gl~~~ilRp~~vyGp~-----~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l 246 (478)
+.. ..+++++++||+.+|||+ ....++.++..+.+|+.+.++|++++.++|+|++|+|++++.++++
T Consensus 154 ~~~-------~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~- 225 (236)
T PF01370_consen 154 YAK-------KYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALEN- 225 (236)
T ss_dssp HHH-------HHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHH-
T ss_pred ccc-------ccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhC-
Confidence 864 468999999999999999 2347889999999999888999999999999999999999999984
Q ss_pred cCCCCCCCCCCCCCCceEEec
Q 011770 247 LDDIPGQKGRPIASGQPYFVS 267 (478)
Q Consensus 247 ~~~~~~~~~~~~~~g~~yni~ 267 (478)
+...+++|||+
T Consensus 226 ----------~~~~~~~yNig 236 (236)
T PF01370_consen 226 ----------PKAAGGIYNIG 236 (236)
T ss_dssp ----------SCTTTEEEEES
T ss_pred ----------CCCCCCEEEeC
Confidence 23578999996
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=319.88 Aligned_cols=327 Identities=20% Similarity=0.141 Sum_probs=236.3
Q ss_pred CeEEEEcCCChhHHHHHHHHH--HcCCceEEEEecCCCCccccc----ccCCCeEEEEecCCCH------HHHHHHhcCc
Q 011770 12 KTFLVTGGLGHVGSALCLELV--RRGAYQVRAFDLRTNSPWSHL----LINHGVHCIQGDVVSK------IDVEKAARGV 79 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~--~~G~~~V~~l~r~~~~~~~~~----~~~~~v~~v~gDl~d~------~~l~~~l~~~ 79 (478)
|+|||||||||||++|+++|+ +.|++ |++++|+........ ....+++++.+|++|+ +.++++ +++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~-V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~ 78 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREAT-VHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-GDI 78 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCE-EEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-cCC
Confidence 479999999999999999999 57888 999998643211000 0125689999999984 456665 899
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchH
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYG 159 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~ 159 (478)
|+||||||...... ......++|+.||.+++++|++.+++++||+||..+| |... .+.+|+....+ ..+.++|+
T Consensus 79 D~Vih~Aa~~~~~~---~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~-g~~~-~~~~e~~~~~~-~~~~~~Y~ 152 (657)
T PRK07201 79 DHVVHLAAIYDLTA---DEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVA-GDYE-GVFREDDFDEG-QGLPTPYH 152 (657)
T ss_pred CEEEECceeecCCC---CHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccc-cCcc-Cccccccchhh-cCCCCchH
Confidence 99999999643222 3456778999999999999999999999999999984 4322 23344432221 12236899
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---------HHHHHHHHHc-CCCCeeeCCCCccccc
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---------LPRIVSLAKL-GLVPFKIGEPSVKTDW 229 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---------~~~~i~~~~~-g~~~~~~g~g~~~~~~ 229 (478)
.||.++|+++++ ..+++++++||+.||||+..+. +..++..+.. ......++++....++
T Consensus 153 ~sK~~~E~~~~~----------~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (657)
T PRK07201 153 RTKFEAEKLVRE----------ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNI 222 (657)
T ss_pred HHHHHHHHHHHH----------cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeee
Confidence 999999999975 2478999999999999865421 1122222211 1122345666778899
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCC---CcccCChHHHHHHHHHH
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDL---PKSWLAVPHALFLGKVF 306 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~---~~~~lp~~~~~~~a~~~ 306 (478)
+||||+++++..+++ .+...|++||+++++++++.|+++.+.+.+|.+. +...+|.++...+..+.
T Consensus 223 v~vddva~ai~~~~~-----------~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~ 291 (657)
T PRK07201 223 VPVDYVADALDHLMH-----------KDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAAL 291 (657)
T ss_pred eeHHHHHHHHHHHhc-----------CcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhc
Confidence 999999999998876 2245688999999999999999999999999987 67788988777665532
Q ss_pred HHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhC---CCCcCCChHHHHHHHHHHHHHcc
Q 011770 307 SFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDEL---CYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~L---G~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
.....+..... ..+.+.+..+..++.+..||++|++++| |+.+. .+++.+.+.++||.++-
T Consensus 292 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~ 355 (657)
T PRK07201 292 GPVRRLRNAVA-----TQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHL 355 (657)
T ss_pred chhhHHHHHHH-----HhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcC
Confidence 22211111000 1233346667777777889999999998 54443 47899999999997764
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=314.15 Aligned_cols=273 Identities=21% Similarity=0.204 Sum_probs=204.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
|+|+|||||||||++++++|+++|++ |++++|+.+.. ...+++++.+|++|.+++.++++++|+|||+|+....
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~-Vv~l~R~~~~~-----~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~ 74 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHE-VVGIARHRPDS-----WPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGR 74 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCchhh-----cccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccc
Confidence 47999999999999999999999998 99999875421 1246889999999999999999999999999985321
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~ 171 (478)
..++|+.||.|++++|++.+++++||+||.+ |.++|+++.+
T Consensus 75 ---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------------------------------K~aaE~ll~~ 115 (854)
T PRK05865 75 ---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH------------------------------QPRVEQMLAD 115 (854)
T ss_pred ---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------------------------------HHHHHHHHHH
Confidence 4689999999999999999999999999842 8899998853
Q ss_pred HcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCC
Q 011770 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251 (478)
Q Consensus 172 ~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~ 251 (478)
++++++++||++||||+.. .++..+.. ......|+++..+||+||+|+|+++..+++.
T Consensus 116 -----------~gl~~vILRp~~VYGP~~~----~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~------ 173 (854)
T PRK05865 116 -----------CGLEWVAVRCALIFGRNVD----NWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLD------ 173 (854)
T ss_pred -----------cCCCEEEEEeceEeCCChH----HHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhC------
Confidence 4789999999999999743 23333322 2222345556678999999999999988862
Q ss_pred CCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHH
Q 011770 252 GQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAE 331 (478)
Q Consensus 252 ~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 331 (478)
+...+++|||++++++|+.|+++.+.+... .+|.+..... .. ..+
T Consensus 174 -----~~~~ggvyNIgsg~~~Si~EIae~l~~~~~------~v~~~~~~~~--------------------~~----~~~ 218 (854)
T PRK05865 174 -----TVIDSGPVNLAAPGELTFRRIAAALGRPMV------PIGSPVLRRV--------------------TS----FAE 218 (854)
T ss_pred -----CCcCCCeEEEECCCcccHHHHHHHHhhhhc------cCCchhhhhc--------------------cc----hhh
Confidence 123467999999999999999998876421 1111110000 00 000
Q ss_pred hhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCCCCCcchHHHHH
Q 011770 332 VYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKSLDGPTIYAWLF 387 (478)
Q Consensus 332 ~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~~~~~~~~~~~~ 387 (478)
.........+|++|++++|||+|+++++++|+++++||+.+.....+.. ...|+.
T Consensus 219 ~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dti~~~r~ri~~~~~~~-~~~~~~ 273 (854)
T PRK05865 219 LELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDFTLAVRGRIGLGKRTF-SLPWRL 273 (854)
T ss_pred hhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcccccccc-ccchhh
Confidence 1111112257999999999999999999999999999998655544444 344543
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=276.71 Aligned_cols=287 Identities=17% Similarity=0.120 Sum_probs=203.1
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCCc-
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSG- 92 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~- 92 (478)
|||||||||||++++++|+++|++ |++++|+.+.... ..... ..|+.+ ..+.+.+.++|+|||+|+.....
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~--~~~~~----~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~~ 72 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHE-VTILTRSPPAGAN--TKWEG----YKPWAP-LAESEALEGADAVINLAGEPIADK 72 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCE-EEEEeCCCCCCCc--cccee----eecccc-cchhhhcCCCCEEEECCCCCcccc
Confidence 699999999999999999999998 9999987663211 11111 123332 44566788999999999964321
Q ss_pred -hhhhchhhhhHhhhHHHHHHHHHHHHcCCC--eEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 93 -KEMLQFGRVDEVNINGTCHVIEACLEFGIQ--RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 93 -~~~~~~~~~~~vNv~gt~nll~aa~~~~v~--r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
.....+...+++|+.++.+++++|++.+++ ++|++||..+ |+.....+.+|+.+..|. +.|+..+...|..+
T Consensus 73 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~-yg~~~~~~~~E~~~~~~~----~~~~~~~~~~e~~~ 147 (292)
T TIGR01777 73 RWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGY-YGTSEDRVFTEEDSPAGD----DFLAELCRDWEEAA 147 (292)
T ss_pred cCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEE-eCCCCCCCcCcccCCCCC----ChHHHHHHHHHHHh
Confidence 122344567889999999999999999874 4565666555 565445567787754332 45777777788776
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
.... ..+++++++||+.+|||++. ..+.+......... ..+|++++.++|+|++|+|+++..+++.
T Consensus 148 ~~~~--------~~~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~i~v~Dva~~i~~~l~~---- 213 (292)
T TIGR01777 148 QAAE--------DLGTRVVLLRTGIVLGPKGG-ALAKMLPPFRLGLG-GPLGSGRQWFSWIHIEDLVQLILFALEN---- 213 (292)
T ss_pred hhch--------hcCCceEEEeeeeEECCCcc-hhHHHHHHHhcCcc-cccCCCCcccccEeHHHHHHHHHHHhcC----
Confidence 5432 35799999999999999753 44444433332221 1358889999999999999999999863
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
+. .+++||+++++++++.|+++.+.+.+|.+.+ ..+|.+.+.... + ..|
T Consensus 214 -------~~-~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~-~~~p~~~~~~~~----------~--------~~~---- 262 (292)
T TIGR01777 214 -------AS-ISGPVNATAPEPVRNKEFAKALARALHRPAF-FPVPAFVLRALL----------G--------EMA---- 262 (292)
T ss_pred -------cc-cCCceEecCCCccCHHHHHHHHHHHhCCCCc-CcCCHHHHHHHh----------c--------hhh----
Confidence 12 2458999999999999999999999997643 457877543220 0 000
Q ss_pred HHhhhhcceeEechHhHHHhCCCCcCC-ChHHHH
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVPIV-SPREGM 362 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p~~-~~~e~l 362 (478)
.....+...+++|+++ +||+|++ +++|++
T Consensus 263 ---~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 263 ---DLLLKGQRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred ---HHHhCCcccccHHHHh-cCCeeeCcChhhcC
Confidence 0122244578899875 9999999 588764
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=296.62 Aligned_cols=261 Identities=18% Similarity=0.157 Sum_probs=195.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCcccccc-------------------------cCCCeEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPWSHLL-------------------------INHGVHC 61 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~~~~~-------------------------~~~~v~~ 61 (478)
.++|+|||||||||+|++|+++|++.+. .+|+++.|.......... ...++++
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 5789999999999999999999998643 348999886653211000 0157899
Q ss_pred EEecCC-------CHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEecccee
Q 011770 62 IQGDVV-------SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVV 133 (478)
Q Consensus 62 v~gDl~-------d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~ 133 (478)
+.||++ |.+.++++++++|+|||+||..... .++....++|+.||.+++++|++. +++++||+||.+||
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vy 165 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFD---ERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVC 165 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCc---CCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEe
Confidence 999998 5555778888999999999965432 356778899999999999999986 78999999999995
Q ss_pred eCCcc---ccCCCCCC-----------------------------C------------CCC--CCccCCchHhhHHHHHH
Q 011770 134 FGGKE---IVNGNESL-----------------------------P------------YFP--IDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 134 ~g~~~---~~~~~E~~-----------------------------p------------~~p--~~~~~~~Y~~sK~~aE~ 167 (478)
..... ..+.++.. + ..| ...+.+.|+.||+++|+
T Consensus 166 G~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~ 245 (491)
T PLN02996 166 GEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEM 245 (491)
T ss_pred cCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHH
Confidence 33211 11111000 0 000 11234789999999999
Q ss_pred HHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC---c------HHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---H------LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~---~------~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
++.++. .+++++++||++||||++.+ + ...++..+.+|....++|+|++.+|+|||||+|+|
T Consensus 246 lv~~~~---------~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a 316 (491)
T PLN02996 246 LLGNFK---------ENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNA 316 (491)
T ss_pred HHHHhc---------CCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHH
Confidence 998763 48999999999999998653 1 13345556778777788999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecCC--CCCCHHHHHHHHHHhcCCCC
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDG--FPINTFEFIGPLLKTLDYDL 289 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g--~~~s~~e~~~~i~~~lg~~~ 289 (478)
++.++..... ....+++||++++ .++++.|+++.+.+..+..+
T Consensus 317 ~l~a~~~~~~--------~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 317 MIVAMAAHAG--------GQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred HHHHHHHhhc--------cCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 9999873100 1124679999998 89999999999999887543
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=265.65 Aligned_cols=275 Identities=14% Similarity=0.058 Sum_probs=195.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlA 86 (478)
-+.|+||||||+||||++|+++|+++|++ |+... +|+.|.+.+...++ ++|+|||||
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~-V~~~~--------------------~~~~~~~~v~~~l~~~~~D~ViH~A 65 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGID-FHYGS--------------------GRLENRASLEADIDAVKPTHVFNAA 65 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCE-EEEec--------------------CccCCHHHHHHHHHhcCCCEEEECC
Confidence 34578999999999999999999999998 87431 34556666766665 689999999
Q ss_pred cCCCCc---hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCc--c---ccCCCCCCCCCCCCccCCch
Q 011770 87 SYGMSG---KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGK--E---IVNGNESLPYFPIDEHVDSY 158 (478)
Q Consensus 87 a~~~~~---~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~--~---~~~~~E~~p~~p~~~~~~~Y 158 (478)
|..... .+..++...+++|+.||.|++++|++.+++ ++++||.+||.++. + ..+.+|+.+..|. .++|
T Consensus 66 a~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~---~s~Y 141 (298)
T PLN02778 66 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFT---GSFY 141 (298)
T ss_pred cccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCCCCCC---CCch
Confidence 976432 244577889999999999999999999985 66778778753322 1 1235665543332 3789
Q ss_pred HhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 159 GRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 159 ~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
+.||.++|+++..+. +..++|+..++|++.. ....+++.+..+..+...+ .+|+|++|+++|
T Consensus 142 g~sK~~~E~~~~~y~------------~~~~lr~~~~~~~~~~-~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~a 203 (298)
T PLN02778 142 SKTKAMVEELLKNYE------------NVCTLRVRMPISSDLS-NPRNFITKITRYEKVVNIP-----NSMTILDELLPI 203 (298)
T ss_pred HHHHHHHHHHHHHhh------------ccEEeeecccCCcccc-cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHH
Confidence 999999999998764 2457898888887533 2345677777776554433 379999999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCc--ccCChHHHHHHHHHHHHHHHhhhhc
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPK--SWLAVPHALFLGKVFSFFYSVLYPW 316 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~--~~lp~~~~~~~a~~~~~~~~~~~~~ 316 (478)
++.+++. .. +++||+++++++|+.|+++.+++.+|.+.+. +.++ .
T Consensus 204 l~~~l~~------------~~-~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~-~------------------- 250 (298)
T PLN02778 204 SIEMAKR------------NL-TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLE-E------------------- 250 (298)
T ss_pred HHHHHhC------------CC-CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHH-H-------------------
Confidence 9998862 12 3599999999999999999999999964321 1111 0
Q ss_pred cccccCCCCCCcHHH-hhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 317 LNRWWLPQPLILPAE-VYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 317 ~~~~~~~~p~~~~~~-~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
.+. .+.-..+..+|++|+++.++=.+.. .+++++..++-.|..
T Consensus 251 ------------~~~~~~~~~~~~~Ld~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~ 294 (298)
T PLN02778 251 ------------QAKVIVAPRSNNELDTTKLKREFPELLPI-KESLIKYVFEPNKKT 294 (298)
T ss_pred ------------HHHHHhCCCccccccHHHHHHhcccccch-HHHHHHHHHHHHHhh
Confidence 000 0000112248999999987764444 567777777666543
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=253.90 Aligned_cols=323 Identities=23% Similarity=0.235 Sum_probs=254.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--------cccCCCeEEEEecCCCHHHHHHHhc--Cc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--------LLINHGVHCIQGDVVSKIDVEKAAR--GV 79 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--------~~~~~~v~~v~gDl~d~~~l~~~l~--~~ 79 (478)
++|+.||||-||+-|+.|++.|+++||+ |.++.|+.+..... .....++..+.||++|...+.++++ ++
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~-VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~P 79 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYE-VHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQP 79 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcE-EEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCc
Confidence 3689999999999999999999999999 99999885532111 1233458899999999999999998 57
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC--CeEEEEeccceeeCCccccCCCCCCCCCCCCccCCc
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS 157 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v--~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~ 157 (478)
|-|+|+||....+.+..+|....+++..||.++||+.+..+. .||...||+.- ||.....|.+|++|..|- +|
T Consensus 80 dEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~-fG~v~~~pq~E~TPFyPr----SP 154 (345)
T COG1089 80 DEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSEL-YGLVQEIPQKETTPFYPR----SP 154 (345)
T ss_pred hhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHh-hcCcccCccccCCCCCCC----CH
Confidence 999999999999899999999999999999999999999874 38888999876 888888899999999985 99
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-c----HHHHHHHHHcCCCC-eeeCCCCcccccee
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-H----LPRIVSLAKLGLVP-FKIGEPSVKTDWIY 231 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~----~~~~i~~~~~g~~~-~~~g~g~~~~~~v~ 231 (478)
|+.+|.-|--+...|.+ .+|+-.|.=..++-=+|.... + +.+.+..++.|..- ...|+-+.+|||=|
T Consensus 155 YAvAKlYa~W~tvNYRe-------sYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~ 227 (345)
T COG1089 155 YAVAKLYAYWITVNYRE-------SYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGH 227 (345)
T ss_pred HHHHHHHHHheeeehHh-------hcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccc
Confidence 99999999988888875 789999988888777775432 2 44455667777654 35699999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHH-H
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF-Y 310 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~-~ 310 (478)
..|-++++.+.+++ ...+.|.|++|+..|++||++...+.+|.+....---. .|.. .
T Consensus 228 A~DYVe~mwlmLQq-------------~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~---------~e~g~d 285 (345)
T COG1089 228 AKDYVEAMWLMLQQ-------------EEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGV---------DEKGVD 285 (345)
T ss_pred hHHHHHHHHHHHcc-------------CCCCceEEecCceeeHHHHHHHHHHHcCceEEEeeccc---------cccccc
Confidence 99999999998874 23568999999999999999999999996643210000 0000 0
Q ss_pred HhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 311 SVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
.-.+... .-..+-++.|.++..+ .-|.+||+++|||+|+++++|-+++++++..+..
T Consensus 286 a~~G~~~--V~idp~~fRPaEV~~L----lgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~ 342 (345)
T COG1089 286 AKTGKII--VEIDPRYFRPAEVDLL----LGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342 (345)
T ss_pred cccCcee--EEECccccCchhhhhh----cCCHHHHHHHcCCccccCHHHHHHHHHHHHHHHh
Confidence 0000000 0003445667777665 4699999999999999999999999999876543
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=268.79 Aligned_cols=247 Identities=17% Similarity=0.096 Sum_probs=181.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----ccc--cCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLL--INHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----~~~--~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
.+++|+|||||||||++++++|+++|++ |++++|+...... ... ...+++++++|++|.+++.+++.++|.|+
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~-V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~ 83 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYT-VHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLF 83 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence 4679999999999999999999999999 9999885432110 001 12468899999999999999999999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceee-CCc---cccCCCCCCCCCCCC--ccCC
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVF-GGK---EIVNGNESLPYFPID--EHVD 156 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~-g~~---~~~~~~E~~p~~p~~--~~~~ 156 (478)
|+++..... ..+.+..+++|+.||.+++++|.+. +++|+|++||.++++ +.. ...+.+|+.+..+.. ....
T Consensus 84 ~~~~~~~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 161 (297)
T PLN02583 84 CCFDPPSDY--PSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKL 161 (297)
T ss_pred EeCccCCcc--cccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhccc
Confidence 988643211 1234678999999999999999987 689999999998753 311 223567765432210 1113
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHH
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLV 236 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva 236 (478)
.|+.||..+|++++.+.. ..+++++++||+.||||+.....+ ...+... .+++ ..++||||+|+|
T Consensus 162 ~Y~~sK~~aE~~~~~~~~-------~~gi~~v~lrp~~v~Gp~~~~~~~-----~~~~~~~-~~~~--~~~~~v~V~Dva 226 (297)
T PLN02583 162 WHALAKTLSEKTAWALAM-------DRGVNMVSINAGLLMGPSLTQHNP-----YLKGAAQ-MYEN--GVLVTVDVNFLV 226 (297)
T ss_pred HHHHHHHHHHHHHHHHHH-------HhCCcEEEEcCCcccCCCCCCchh-----hhcCCcc-cCcc--cCcceEEHHHHH
Confidence 699999999999988754 468999999999999998754222 2223221 2222 346899999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcC
Q 011770 237 LALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLD 286 (478)
Q Consensus 237 ~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg 286 (478)
+|+++|++. +...| .|+++++......++++.+.+.+.
T Consensus 227 ~a~~~al~~-----------~~~~~-r~~~~~~~~~~~~~~~~~~~~~~p 264 (297)
T PLN02583 227 DAHIRAFED-----------VSSYG-RYLCFNHIVNTEEDAVKLAQMLSP 264 (297)
T ss_pred HHHHHHhcC-----------cccCC-cEEEecCCCccHHHHHHHHHHhCC
Confidence 999999972 23344 788887665556778888888754
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=272.86 Aligned_cols=255 Identities=19% Similarity=0.157 Sum_probs=205.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHHHHHHhc----C
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKIDVEKAAR----G 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~l~~~l~----~ 78 (478)
.++++|+|||||||||++++++|+++|++ |++++|+...... .....++++++++|++|.+++.++++ +
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 45679999999999999999999999998 9999987643110 01123578999999999999999988 5
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCch
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSY 158 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y 158 (478)
+|+||||++.... .....+++|+.++.|++++|++.|+++||++||.+++ + | ...|
T Consensus 137 ~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~-~--------------p----~~~~ 192 (390)
T PLN02657 137 VDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQ-K--------------P----LLEF 192 (390)
T ss_pred CcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeecccc-C--------------c----chHH
Confidence 9999999874221 1234568899999999999999999999999998762 1 1 1458
Q ss_pred HhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc-cceeHHHHHH
Q 011770 159 GRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT-DWIYVDNLVL 237 (478)
Q Consensus 159 ~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~-~~v~V~Dva~ 237 (478)
..+|...|+.+... ..+++++++||+.+||+. ...+..+.+|.+..++|+|+..+ ++||++|+|+
T Consensus 193 ~~sK~~~E~~l~~~---------~~gl~~tIlRp~~~~~~~-----~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~ 258 (390)
T PLN02657 193 QRAKLKFEAELQAL---------DSDFTYSIVRPTAFFKSL-----GGQVEIVKDGGPYVMFGDGKLCACKPISEADLAS 258 (390)
T ss_pred HHHHHHHHHHHHhc---------cCCCCEEEEccHHHhccc-----HHHHHhhccCCceEEecCCcccccCceeHHHHHH
Confidence 99999999988651 368999999999999852 33456677788777789988765 6899999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCC-CCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhh
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDG-FPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVL 313 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g-~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~ 313 (478)
+++.+++ .+...|++|||+++ +.+|++|+++.+.+.+|.+.+...+|.+++.....+.+.+..++
T Consensus 259 ~i~~~~~-----------~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~~~~~~~~~~~~~~~~~~ 324 (390)
T PLN02657 259 FIADCVL-----------DESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPIQIMDFAIGVLDFLAKIF 324 (390)
T ss_pred HHHHHHh-----------CccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCHHHHHHHHHHHHHhhhhC
Confidence 9998886 22456789999985 69999999999999999988888999999888777776665543
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=242.69 Aligned_cols=292 Identities=18% Similarity=0.199 Sum_probs=227.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa 87 (478)
+++||||||+|.+|+++++.+.+.|.+ +=.++ +.+. .+|+++.++.+.+++ ++.+|||+||
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf-~~sk---------------d~DLt~~a~t~~lF~~ekPthVIhlAA 64 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVF-IGSK---------------DADLTNLADTRALFESEKPTHVIHLAA 64 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEE-eccc---------------cccccchHHHHHHHhccCCceeeehHh
Confidence 478999999999999999999998762 02222 1221 479999999999886 6899999999
Q ss_pred CC-CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCC-CCCccCCchHhhHHHH
Q 011770 88 YG-MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF-PIDEHVDSYGRSKSVA 165 (478)
Q Consensus 88 ~~-~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~-p~~~~~~~Y~~sK~~a 165 (478)
.. ..-.....+.+++..|+....|++..|.++|++++|++.|+++ |......|++|+.-.. |.++..-.|+..|.++
T Consensus 65 mVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCI-fPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~i 143 (315)
T KOG1431|consen 65 MVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCI-FPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMI 143 (315)
T ss_pred hhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceee-cCCCCCCCCCHHHhccCCCCCCchHHHHHHHHH
Confidence 43 3334455677899999999999999999999999999999987 6777777889976543 3333446799999998
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHHHHH----HcCC-CCeeeCCCCccccceeHHH
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIVSLA----KLGL-VPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i~~~----~~g~-~~~~~g~g~~~~~~v~V~D 234 (478)
.-.-+.|.. ++|-.++.+-|+++|||.++- .+|.++..+ .+|. .+.++|+|...|+|+|++|
T Consensus 144 dv~n~aY~~-------qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~D 216 (315)
T KOG1431|consen 144 DVQNQAYRQ-------QHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDD 216 (315)
T ss_pred HHHHHHHHH-------HhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhH
Confidence 877777765 689999999999999998752 466666544 4555 6778999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC--CCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHh
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF--PINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSV 312 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~--~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~ 312 (478)
+|++++..+.. -..-+..+++.|+ .+|++|.++.+.++.+.......-
T Consensus 217 LA~l~i~vlr~------------Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~D------------------ 266 (315)
T KOG1431|consen 217 LADLFIWVLRE------------YEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWD------------------ 266 (315)
T ss_pred HHHHHHHHHHh------------hcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEee------------------
Confidence 99999999873 1223578888888 899999999999999987543210
Q ss_pred hhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCC-hHHHHHHHHHHHHHccC
Q 011770 313 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVS-PREGMAATISYWQDRKR 374 (478)
Q Consensus 313 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~-~~e~l~~~i~~~~~~~~ 374 (478)
. .+|- ... ....|++|++. |+|.|+.+ +++++.++++||.++-.
T Consensus 267 -----t----tK~D---Gq~-----kKtasnsKL~s-l~pd~~ft~l~~ai~~t~~Wy~~Ny~ 311 (315)
T KOG1431|consen 267 -----T----TKSD---GQF-----KKTASNSKLRS-LLPDFKFTPLEQAISETVQWYLDNYE 311 (315)
T ss_pred -----c----cCCC---CCc-----ccccchHHHHH-hCCCcccChHHHHHHHHHHHHHHhHH
Confidence 0 1111 111 12479999977 89999986 99999999999987643
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=261.77 Aligned_cols=264 Identities=25% Similarity=0.265 Sum_probs=190.4
Q ss_pred eEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCccc--c------------cccC-CCeEEEEecCCC------H
Q 011770 13 TFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWS--H------------LLIN-HGVHCIQGDVVS------K 69 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~--~------------~~~~-~~v~~v~gDl~d------~ 69 (478)
+|+|||||||||++|+++|+++| ++ |+++.|+.+.... . .... .+++++.+|+++ .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~-V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAK-VICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCE-EEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 58999999999999999999998 56 9999887652100 0 0001 579999999975 3
Q ss_pred HHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 70 IDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 70 ~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
+.+.++.+++|+|||+|+..... .......++|+.|+.+++++|.+.+++++||+||.+++.. ....+..|+.+..
T Consensus 80 ~~~~~~~~~~d~vih~a~~~~~~---~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~-~~~~~~~~~~~~~ 155 (367)
T TIGR01746 80 AEWERLAENVDTIVHNGALVNWV---YPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAA-IDLSTVTEDDAIV 155 (367)
T ss_pred HHHHHHHhhCCEEEeCCcEeccC---CcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCC-cCCCCcccccccc
Confidence 56777778999999999964322 2235567899999999999999999989999999998533 2222233433322
Q ss_pred C-CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHHHHHH-cCCCCeeeC
Q 011770 150 P-IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIVSLAK-LGLVPFKIG 221 (478)
Q Consensus 150 p-~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i~~~~-~g~~~~~~g 221 (478)
+ .....+.|+.||..+|+++..+.. .|++++++||+.+||+...+ .+.+++.... .|.. +.
T Consensus 156 ~~~~~~~~~Y~~sK~~~E~~~~~~~~--------~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~---p~ 224 (367)
T TIGR01746 156 TPPPGLAGGYAQSKWVAELLVREASD--------RGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAY---PD 224 (367)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHh--------cCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCC---CC
Confidence 2 112246899999999999988753 48999999999999984432 2334444332 2321 11
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHH
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALF 301 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~ 301 (478)
......+|+|++|++++++.++... .....+++||+++++++++.|+++.+.+ +|++.+....+.|+..+
T Consensus 225 ~~~~~~~~~~vddva~ai~~~~~~~---------~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~~~~~~~w~~~~ 294 (367)
T TIGR01746 225 SPELTEDLTPVDYVARAIVALSSQP---------AASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLKLVSFDEWLQRL 294 (367)
T ss_pred CCccccCcccHHHHHHHHHHHHhCC---------CcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCCcCCHHHHHHHH
Confidence 2224678999999999999887631 1012378999999999999999999999 89887766666665544
Q ss_pred H
Q 011770 302 L 302 (478)
Q Consensus 302 ~ 302 (478)
.
T Consensus 295 ~ 295 (367)
T TIGR01746 295 E 295 (367)
T ss_pred H
Confidence 3
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=248.82 Aligned_cols=238 Identities=24% Similarity=0.328 Sum_probs=183.2
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc----cCCCeE----EEEecCCCHHHHHHHhc--CcCE
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL----INHGVH----CIQGDVVSKIDVEKAAR--GVDC 81 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~----~~~~v~----~v~gDl~d~~~l~~~l~--~~D~ 81 (478)
||||||+|.||+.||++|++.+..+++++|+++...... .. ..+++. .+.||++|.+.+.++++ ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 799999999999999999999876699999986642211 11 123343 45899999999999999 8999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhh
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~s 161 (478)
|||+||+-..+..+.++.+..++|+.||.|++++|.+++++++|++||.-++ .| .+.||.|
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv---------------~P----tnvmGat 141 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAV---------------NP----TNVMGAT 141 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCS---------------S------SHHHHH
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccC---------------CC----CcHHHHH
Confidence 9999999888888889999999999999999999999999999999998763 23 3789999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALIL 241 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~ 241 (478)
|..+|+++..++... +..+.+++++|+|+|.|.. ...+|.+.+++++|.++ ...+++..|=|+.++++++.++.
T Consensus 142 KrlaE~l~~~~~~~~----~~~~t~f~~VRFGNVlgS~-GSVip~F~~Qi~~g~Pl-TvT~p~mtRffmti~EAv~Lvl~ 215 (293)
T PF02719_consen 142 KRLAEKLVQAANQYS----GNSDTKFSSVRFGNVLGSR-GSVIPLFKKQIKNGGPL-TVTDPDMTRFFMTIEEAVQLVLQ 215 (293)
T ss_dssp HHHHHHHHHHHCCTS----SSS--EEEEEEE-EETTGT-TSCHHHHHHHHHTTSSE-EECETT-EEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhC----CCCCcEEEEEEecceecCC-CcHHHHHHHHHHcCCcc-eeCCCCcEEEEecHHHHHHHHHH
Confidence 999999999987631 1246899999999999984 45899999999999876 46778999999999999999999
Q ss_pred HHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCC
Q 011770 242 ASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYD 288 (478)
Q Consensus 242 a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~ 288 (478)
|... ...|++|..--|+++++.|+++.+.+..|..
T Consensus 216 a~~~------------~~~geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 216 AAAL------------AKGGEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp HHHH--------------TTEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred HHhh------------CCCCcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 9873 3468899998899999999999999999864
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=251.13 Aligned_cols=243 Identities=24% Similarity=0.343 Sum_probs=210.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc----cCCCeEEEEecCCCHHHHHHHhcC--cC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL----INHGVHCIQGDVVSKIDVEKAARG--VD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~----~~~~v~~v~gDl~d~~~l~~~l~~--~D 80 (478)
..+|+||||||+|-||+.||+++++.+..+++.+++++.+.... .. ....+.++-||++|.+.+++++++ +|
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 57899999999999999999999999988899999887643211 11 135688899999999999999998 99
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHh
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGR 160 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~ 160 (478)
+|||+||+-..+-.+.+|.+..++||.||.|++++|.++||+++|.+||.-++ +|. +.||.
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV---------------~Pt----NvmGa 388 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAV---------------NPT----NVMGA 388 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCccc---------------CCc----hHhhH
Confidence 99999999888889999999999999999999999999999999999998763 233 78999
Q ss_pred hHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHH
Q 011770 161 SKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240 (478)
Q Consensus 161 sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~ 240 (478)
||+.+|+++.+++... +..+.++|++|+|||.|.. ...+|.+.+++++|.++ ...+++..|=|+.++|.|+.++
T Consensus 389 TKr~aE~~~~a~~~~~----~~~~T~f~~VRFGNVlGSr-GSViPlFk~QI~~Ggpl-TvTdp~mtRyfMTI~EAv~LVl 462 (588)
T COG1086 389 TKRLAEKLFQAANRNV----SGTGTRFCVVRFGNVLGSR-GSVIPLFKKQIAEGGPL-TVTDPDMTRFFMTIPEAVQLVL 462 (588)
T ss_pred HHHHHHHHHHHHhhcc----CCCCcEEEEEEecceecCC-CCCHHHHHHHHHcCCCc-cccCCCceeEEEEHHHHHHHHH
Confidence 9999999999886521 1126899999999999985 35799999999999866 5678999999999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCC
Q 011770 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYD 288 (478)
Q Consensus 241 ~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~ 288 (478)
.|... ...|++|-.--|+|+++.|+++.+.+..|..
T Consensus 463 qA~a~------------~~gGeifvldMGepvkI~dLAk~mi~l~g~~ 498 (588)
T COG1086 463 QAGAI------------AKGGEIFVLDMGEPVKIIDLAKAMIELAGQT 498 (588)
T ss_pred HHHhh------------cCCCcEEEEcCCCCeEHHHHHHHHHHHhCCC
Confidence 98863 4568899998899999999999999999843
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=227.53 Aligned_cols=290 Identities=21% Similarity=0.205 Sum_probs=203.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-CcCEEEEcccCCCCc
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-GVDCVFHVASYGMSG 92 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-~~D~ViHlAa~~~~~ 92 (478)
|+|||||||||++|+.+|.+.||+ |+++.|+++... ...+..++ ..+.+.+... ++|+|||+||.....
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~-v~iltR~~~~~~--~~~~~~v~-------~~~~~~~~~~~~~DavINLAG~~I~~ 70 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQ-VTILTRRPPKAS--QNLHPNVT-------LWEGLADALTLGIDAVINLAGEPIAE 70 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCe-EEEEEcCCcchh--hhcCcccc-------ccchhhhcccCCCCEEEECCCCcccc
Confidence 689999999999999999999999 999999877431 12222222 2234555555 799999999975443
Q ss_pred h--hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce-eeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 93 K--EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV-VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 93 ~--~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v-~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
. +....+.+.+.-+..|+.+.++..+..-+.=+++|.+++ |||.......+|+.|... +.-+..=..=|+..
T Consensus 71 rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~-----~Fla~lc~~WE~~a 145 (297)
T COG1090 71 RRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGD-----DFLAQLCQDWEEEA 145 (297)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCCC-----ChHHHHHHHHHHHH
Confidence 3 344567888999999999999998665433334443333 688888888899865433 22222222224444
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
+++. ..|.++|.+|.++|.|+. .+.+++++...+.|.-- .+|+|.|.++|||++|+++++..++++
T Consensus 146 ~~a~--------~~gtRvvllRtGvVLs~~-GGaL~~m~~~fk~glGG-~~GsGrQ~~SWIhieD~v~~I~fll~~---- 211 (297)
T COG1090 146 LQAQ--------QLGTRVVLLRTGVVLSPD-GGALGKMLPLFKLGLGG-KLGSGRQWFSWIHIEDLVNAILFLLEN---- 211 (297)
T ss_pred hhhh--------hcCceEEEEEEEEEecCC-CcchhhhcchhhhccCC-ccCCCCceeeeeeHHHHHHHHHHHHhC----
Confidence 4432 468999999999999984 45677776666655432 579999999999999999999999983
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
+...| +||.+++.|++..||.+.+.+.++++. ..++|...++++-- |....++. .+
T Consensus 212 -------~~lsG-p~N~taP~PV~~~~F~~al~r~l~RP~-~~~vP~~~~rl~LG--e~a~~lL~--------gQ----- 267 (297)
T COG1090 212 -------EQLSG-PFNLTAPNPVRNKEFAHALGRALHRPA-ILPVPSFALRLLLG--EMADLLLG--------GQ----- 267 (297)
T ss_pred -------cCCCC-cccccCCCcCcHHHHHHHHHHHhCCCc-cccCcHHHHHHHhh--hhHHHHhc--------cc-----
Confidence 33444 899999999999999999999999764 45678766554311 22211211 11
Q ss_pred HHhhhhcceeEechHhHHHhCCCCcCC-ChHHHHHHHHH
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVPIV-SPREGMAATIS 367 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p~~-~~~e~l~~~i~ 367 (478)
..=.+|+. ..||+.++ |+++++.+.+.
T Consensus 268 ----------rvlP~kl~-~aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 268 ----------RVLPKKLE-AAGFQFQYPDLEEALADILK 295 (297)
T ss_pred ----------hhhHHHHH-HCCCeeecCCHHHHHHHHHh
Confidence 12244554 47999987 88888888764
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=263.70 Aligned_cols=257 Identities=17% Similarity=0.217 Sum_probs=191.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCccc--c---cc--------------------cCCCeEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWS--H---LL--------------------INHGVHC 61 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~--~---~~--------------------~~~~v~~ 61 (478)
.++++|||||||||+|++|+++|++.+.+ +|+++.|....... . .. ...++++
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 46899999999999999999999987642 48999886543200 0 00 0246889
Q ss_pred EEecCCCH------HHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceee
Q 011770 62 IQGDVVSK------IDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVF 134 (478)
Q Consensus 62 v~gDl~d~------~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~ 134 (478)
+.||++++ +..+.+.+++|+|||+||..... .+++...++|+.||.+++++|++. +++++||+||..||
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~---~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVy- 272 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFD---ERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVN- 272 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccc---cCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceee-
Confidence 99999986 45666778899999999965432 346778899999999999999987 47899999999995
Q ss_pred CCccccCCCCCC-C--------------------------------------CC---------C-------CCccCCchH
Q 011770 135 GGKEIVNGNESL-P--------------------------------------YF---------P-------IDEHVDSYG 159 (478)
Q Consensus 135 g~~~~~~~~E~~-p--------------------------------------~~---------p-------~~~~~~~Y~ 159 (478)
|... ..+.|.. | .. + ...+++.|.
T Consensus 273 G~~~-G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt 351 (605)
T PLN02503 273 GQRQ-GRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYV 351 (605)
T ss_pred cCCC-CeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHH
Confidence 4321 1111110 0 00 0 123458999
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCce----------eCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAI----------YGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~v----------yGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
.||++||++++++. .+++++|+||+.| |++++....+.++.. .+|.....+|+++...|+
T Consensus 352 ~TK~lAE~lV~~~~---------~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~-g~G~lr~~~~~~~~~~Di 421 (605)
T PLN02503 352 FTKAMGEMVINSMR---------GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYY-GKGQLTGFLADPNGVLDV 421 (605)
T ss_pred HHHHHHHHHHHHhc---------CCCCEEEEcCCEecccccCCccccccCccccchhhhhe-eccceeEEEeCCCeeEeE
Confidence 99999999998763 5899999999999 677654444444333 477767788999999999
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC--CCCCHHHHHHHHHHhcCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG--FPINTFEFIGPLLKTLDY 287 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g--~~~s~~e~~~~i~~~lg~ 287 (478)
|+||.+|++++.|+..... .....+++||++++ +|+++.|+.+.+.+....
T Consensus 422 VPVD~vvna~i~a~a~~~~-------~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 422 VPADMVVNATLAAMAKHGG-------AAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred EeecHHHHHHHHHHHhhhc-------ccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 9999999999998542111 11235789999988 999999999999876654
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=258.96 Aligned_cols=271 Identities=14% Similarity=0.085 Sum_probs=189.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa 87 (478)
++||||||||+||||++|++.|.++|++ |... .+|++|.+.+.+.++ ++|+||||||
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~-v~~~--------------------~~~l~d~~~v~~~i~~~~pd~Vih~Aa 437 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIA-YEYG--------------------KGRLEDRSSLLADIRNVKPTHVFNAAG 437 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCe-EEee--------------------ccccccHHHHHHHHHhhCCCEEEECCc
Confidence 4578999999999999999999999988 7311 246888888888876 7899999999
Q ss_pred CCC---CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCc-----cccCCCCCCCCCCCCccCCchH
Q 011770 88 YGM---SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGK-----EIVNGNESLPYFPIDEHVDSYG 159 (478)
Q Consensus 88 ~~~---~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~-----~~~~~~E~~p~~p~~~~~~~Y~ 159 (478)
+.. .+.++.++...+++|+.||.+++++|++.|+ ++|++||.+||.++. ...+.+|+++..|. .++|+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~---~~~Yg 513 (668)
T PLN02260 438 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFT---GSFYS 513 (668)
T ss_pred ccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCCCCCC---CChhh
Confidence 763 2234567888999999999999999999999 578888888853321 12356776554432 37899
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHH
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLAL 239 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~ 239 (478)
.||.++|++++.+. +..++|+..+||++..+ ..++++.+.+.......+ .+..+++|++.++
T Consensus 514 ~sK~~~E~~~~~~~------------~~~~~r~~~~~~~~~~~-~~nfv~~~~~~~~~~~vp-----~~~~~~~~~~~~~ 575 (668)
T PLN02260 514 KTKAMVEELLREYD------------NVCTLRVRMPISSDLSN-PRNFITKISRYNKVVNIP-----NSMTVLDELLPIS 575 (668)
T ss_pred HHHHHHHHHHHhhh------------hheEEEEEEecccCCCC-ccHHHHHHhccceeeccC-----CCceehhhHHHHH
Confidence 99999999998763 35677888888754211 123444443333222222 3578889999998
Q ss_pred HHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccc
Q 011770 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNR 319 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~ 319 (478)
+.+++. ..+++||+++++.+|++|+++.+++.++.......++.. + ... . ...
T Consensus 576 ~~l~~~-------------~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~---------~-~~~-~--~~a- 628 (668)
T PLN02260 576 IEMAKR-------------NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLE---------E-QAK-V--IVA- 628 (668)
T ss_pred HHHHHh-------------CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHH---------H-hhh-H--hhC-
Confidence 887752 225799999999999999999999987522111111110 0 000 0 000
Q ss_pred ccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHH
Q 011770 320 WWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATIS 367 (478)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~ 367 (478)
+.| .. .+|++|+++.+|. + .+++++|++.+.
T Consensus 629 ---~rp-----------~~-~l~~~k~~~~~~~-~-~~~~~~l~~~~~ 659 (668)
T PLN02260 629 ---PRS-----------NN-EMDASKLKKEFPE-L-LSIKESLIKYVF 659 (668)
T ss_pred ---CCc-----------cc-cccHHHHHHhCcc-c-cchHHHHHHHHh
Confidence 111 12 5799999999998 4 569999988764
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=247.59 Aligned_cols=198 Identities=22% Similarity=0.243 Sum_probs=152.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
||||||||+||||++|+++|+++|++ |++++|.+.. ....+++++++|++|.. +.+++.++|+|||||+....
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~-Vi~ldr~~~~-----~~~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLAa~~~~ 73 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHT-VSGIAQHPHD-----ALDPRVDYVCASLRNPV-LQELAGEADAVIHLAPVDTS 73 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE-EEEEeCChhh-----cccCCceEEEccCCCHH-HHHHhcCCCEEEEcCccCcc
Confidence 47999999999999999999999998 9999986542 12357899999999985 78888999999999985321
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~ 171 (478)
...++|+.|+.|++++|++.|+ ++||+||.. |.. ..|. .+|.++..
T Consensus 74 --------~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~~---G~~------------------~~~~----~aE~ll~~ 119 (699)
T PRK12320 74 --------APGGVGITGLAHVANAAARAGA-RLLFVSQAA---GRP------------------ELYR----QAETLVST 119 (699)
T ss_pred --------chhhHHHHHHHHHHHHHHHcCC-eEEEEECCC---CCC------------------cccc----HHHHHHHh
Confidence 1125899999999999999998 799999852 211 1132 47877653
Q ss_pred HcCCCCccCCCCcceEEEEeCCceeCCCCCCc----HHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhccc
Q 011770 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH----LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLL 247 (478)
Q Consensus 172 ~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~----~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~ 247 (478)
++++++++|++++|||+.... +..++.....++ ...++||+|++++++.+++.
T Consensus 120 -----------~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~----------pI~vIyVdDvv~alv~al~~-- 176 (699)
T PRK12320 120 -----------GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSAR----------PIRVLHLDDLVRFLVLALNT-- 176 (699)
T ss_pred -----------cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCC----------ceEEEEHHHHHHHHHHHHhC--
Confidence 357899999999999976543 333333332332 23459999999999998862
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHh
Q 011770 248 DDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKT 284 (478)
Q Consensus 248 ~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~ 284 (478)
..+++|||++++.+|+.|+++.+...
T Consensus 177 -----------~~~GiyNIG~~~~~Si~el~~~i~~~ 202 (699)
T PRK12320 177 -----------DRNGVVDLATPDTTNVVTAWRLLRSV 202 (699)
T ss_pred -----------CCCCEEEEeCCCeeEHHHHHHHHHHh
Confidence 12349999999999999998888665
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=214.43 Aligned_cols=307 Identities=17% Similarity=0.142 Sum_probs=227.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc---cCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL---INHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~---~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
..+-.+-|.|||||+|+.+|.+|.+.|-+ |++-.|..+....... .-..+-+...|++|++++.++++...+|||+
T Consensus 59 ~sGiVaTVFGAtGFlGryvvnklak~GSQ-viiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINL 137 (391)
T KOG2865|consen 59 VSGIVATVFGATGFLGRYVVNKLAKMGSQ-VIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINL 137 (391)
T ss_pred ccceEEEEecccccccHHHHHHHhhcCCe-EEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEe
Confidence 34455788999999999999999999998 9998887664322221 2345788999999999999999999999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
.|-.. +...-.++++|+.+.+.+.+.|++.||.|+|++|+.++-.. ..+-|-+||.++
T Consensus 138 IGrd~----eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lganv~------------------s~Sr~LrsK~~g 195 (391)
T KOG2865|consen 138 IGRDY----ETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGANVK------------------SPSRMLRSKAAG 195 (391)
T ss_pred ecccc----ccCCcccccccchHHHHHHHHHHhhChhheeehhhcccccc------------------ChHHHHHhhhhh
Confidence 98522 22234678999999999999999999999999999764100 015699999999
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCC-CccccceeHHHHHHHHHHHHh
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEP-SVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g-~~~~~~v~V~Dva~a~~~a~~ 244 (478)
|..++++.. +.+|+||+.|||..| +++......-++-.++.+++.| +.....|||-|+|.+|+.|++
T Consensus 196 E~aVrdafP-----------eAtIirPa~iyG~eD-rfln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvk 263 (391)
T KOG2865|consen 196 EEAVRDAFP-----------EATIIRPADIYGTED-RFLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVK 263 (391)
T ss_pred HHHHHhhCC-----------cceeechhhhcccch-hHHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhcc
Confidence 999998764 478999999999965 4555555544544445566665 466789999999999999987
Q ss_pred cccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCC
Q 011770 245 GLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQ 324 (478)
Q Consensus 245 ~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 324 (478)
+|.+.|++|...++....+.|+++.+.+.........+.|.+.+...+...++....+. ..
T Consensus 264 -----------Dp~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf~--------~~ 324 (391)
T KOG2865|consen 264 -----------DPDSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFP--------PP 324 (391)
T ss_pred -----------CccccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCCC--------CC
Confidence 67889999999999999999999999988877555555666555554444443221111 22
Q ss_pred CCCcHHHhhhhcce-eEechHhHHHhCCCCcCCChHHHHHHHHHHHH
Q 011770 325 PLILPAEVYKVGVT-HYFSLLKAKDELCYVPIVSPREGMAATISYWQ 370 (478)
Q Consensus 325 p~~~~~~~~~~~~~-~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~ 370 (478)
..++++.+..+..+ ...+...--++||-.++. +|..--+.+..|+
T Consensus 325 ~pln~d~ie~~~v~~~vlt~~~tleDLgv~~t~-le~~~~e~l~~yR 370 (391)
T KOG2865|consen 325 SPLNRDQIERLTVTDLVLTGAPTLEDLGVVLTK-LELYPVEFLRQYR 370 (391)
T ss_pred CCCCHHHhhheeehhhhcCCCCcHhhcCceeee-cccccHHHHHHHh
Confidence 22677777766543 345666667889998765 5544444444343
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-28 Score=230.49 Aligned_cols=212 Identities=25% Similarity=0.301 Sum_probs=131.4
Q ss_pred EEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCcccc--------------c---ccCCCeEEEEecCCCH------HH
Q 011770 16 VTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSH--------------L---LINHGVHCIQGDVVSK------ID 71 (478)
Q Consensus 16 VTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~~~~--------------~---~~~~~v~~v~gDl~d~------~~ 71 (478)
|||||||+|++|+++|++++.. +|+++.|.++..... . ....+++++.||++++ ++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 7999999999999999999761 399999876431000 0 1267899999999874 56
Q ss_pred HHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCC------CC
Q 011770 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGN------ES 145 (478)
Q Consensus 72 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~------E~ 145 (478)
+.++.+++|+||||||...... ..+...++||.||.++++.|.+.+.++|+|+||..+ .+.... ... +.
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~~~~---~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v-~~~~~~-~~~~~~~~~~~ 155 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVNFNA---PYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYV-AGSRPG-TIEEKVYPEEE 155 (249)
T ss_dssp HHHHHHH--EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGG-TTS-TT-T--SSS-HHH-
T ss_pred hhccccccceeeecchhhhhcc---cchhhhhhHHHHHHHHHHHHHhccCcceEEeccccc-cCCCCC-ccccccccccc
Confidence 7777789999999999654333 345688999999999999999877779999999433 333221 111 11
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-------cHHHHHHHHHcCCCCe
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-------HLPRIVSLAKLGLVPF 218 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-------~~~~~i~~~~~g~~~~ 218 (478)
.+..+.....+.|..||.+||+++.++.. ..|++++|+||+.|+|....+ ....+...+..|..+.
T Consensus 156 ~~~~~~~~~~~gY~~SK~~aE~~l~~a~~-------~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~ 228 (249)
T PF07993_consen 156 DDLDPPQGFPNGYEQSKWVAERLLREAAQ-------RHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPD 228 (249)
T ss_dssp -EEE--TTSEE-HHHHHHHHHHHHHHHHH-------HH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES
T ss_pred ccchhhccCCccHHHHHHHHHHHHHHHHh-------cCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCccc
Confidence 11222233457999999999999999863 359999999999999943322 2233455666777766
Q ss_pred eeCCCCccccceeHHHHHHHH
Q 011770 219 KIGEPSVKTDWIYVDNLVLAL 239 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~ 239 (478)
..++++...|++.||.+|++|
T Consensus 229 ~~~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 229 LPGDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp -SB---TT--EEEHHHHHHHH
T ss_pred ccCCCCceEeEECHHHHHhhC
Confidence 778877889999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=220.13 Aligned_cols=218 Identities=15% Similarity=0.096 Sum_probs=165.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh------cC-cCEEEEc
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA------RG-VDCVFHV 85 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l------~~-~D~ViHl 85 (478)
+|+||||||++|++++++|+++|++ |++++|+++.. ...+++.+.+|+.|++++.+++ ++ +|.|||+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~-V~~~~R~~~~~-----~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~ 74 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVP-FLVASRSSSSS-----AGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLV 74 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCc-EEEEeCCCccc-----cCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEe
Confidence 4899999999999999999999999 99999987532 2346788899999999999999 67 9999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
++... . ....+.+++++|++.|++||||+||..+..+ +..+...
T Consensus 75 ~~~~~---~----------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~-----------------------~~~~~~~ 118 (285)
T TIGR03649 75 APPIP---D----------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG-----------------------GPAMGQV 118 (285)
T ss_pred CCCCC---C----------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC-----------------------CchHHHH
Confidence 86321 0 1234578999999999999999999765211 0112334
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhc
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMG 245 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~ 245 (478)
|+.+.+ ..+++++++||+.+|+...... ....+..+.. ...+.++...+|||++|+++++..++..
T Consensus 119 ~~~l~~----------~~gi~~tilRp~~f~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~v~~~Dva~~~~~~l~~ 184 (285)
T TIGR03649 119 HAHLDS----------LGGVEYTVLRPTWFMENFSEEF---HVEAIRKENK-IYSATGDGKIPFVSADDIARVAYRALTD 184 (285)
T ss_pred HHHHHh----------ccCCCEEEEeccHHhhhhcccc---cccccccCCe-EEecCCCCccCcccHHHHHHHHHHHhcC
Confidence 555532 2489999999999986532111 1122322222 2446678889999999999999988862
Q ss_pred ccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChH
Q 011770 246 LLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVP 297 (478)
Q Consensus 246 l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~ 297 (478)
+...++.|++++++.+|+.|+++.+.+.+|++.+...+|..
T Consensus 185 -----------~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~ 225 (285)
T TIGR03649 185 -----------KVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEE 225 (285)
T ss_pred -----------CCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHH
Confidence 23457799999999999999999999999998877777764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=256.02 Aligned_cols=263 Identities=21% Similarity=0.225 Sum_probs=187.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC----CceEEEEecCCCCccccc--------------ccCCCeEEEEecCCC----
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG----AYQVRAFDLRTNSPWSHL--------------LINHGVHCIQGDVVS---- 68 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G----~~~V~~l~r~~~~~~~~~--------------~~~~~v~~v~gDl~d---- 68 (478)
.++|+|||||||+|++|+++|++++ ++ |+++.|......... ....+++++.+|+++
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~-V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFK-VFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcE-EEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 4789999999999999999999987 56 999988644211000 012368999999974
Q ss_pred --HHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCc---------
Q 011770 69 --KIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGK--------- 137 (478)
Q Consensus 69 --~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~--------- 137 (478)
.+.+.++.+++|+|||+|+...... ........|+.||.+++++|.+.++++++|+||.+||....
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~~~~---~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVHWVY---PYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELV 1126 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEecCcc---CHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhh
Confidence 4667777789999999999653221 23345568999999999999999999999999999953211
Q ss_pred --cccCCCCCCCCCCC-CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHH
Q 011770 138 --EIVNGNESLPYFPI-DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIV 208 (478)
Q Consensus 138 --~~~~~~E~~p~~p~-~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i 208 (478)
......|+.+..+. ....+.|+.||..+|+++..+. ..|++++++||+.|||++..+ ++..++
T Consensus 1127 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~--------~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~ 1198 (1389)
T TIGR03443 1127 QAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAG--------KRGLRGCIVRPGYVTGDSKTGATNTDDFLLRML 1198 (1389)
T ss_pred hccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHH--------hCCCCEEEECCCccccCCCcCCCCchhHHHHHH
Confidence 01122333322211 1223679999999999998875 358999999999999997653 234444
Q ss_pred HHHH-cCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCC
Q 011770 209 SLAK-LGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDY 287 (478)
Q Consensus 209 ~~~~-~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~ 287 (478)
.... .|. +++....++|+||||++++++.++... .....+.+||++++..+++.++++.+.+ .|+
T Consensus 1199 ~~~~~~~~----~p~~~~~~~~~~Vddva~ai~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~~l~~-~g~ 1264 (1389)
T TIGR03443 1199 KGCIQLGL----IPNINNTVNMVPVDHVARVVVAAALNP---------PKESELAVAHVTGHPRIRFNDFLGTLKT-YGY 1264 (1389)
T ss_pred HHHHHhCC----cCCCCCccccccHHHHHHHHHHHHhCC---------cccCCCCEEEeCCCCCCcHHHHHHHHHH-hCC
Confidence 3332 222 234456799999999999999987631 0012346899999999999999999976 477
Q ss_pred CCCcccCChHHH
Q 011770 288 DLPKSWLAVPHA 299 (478)
Q Consensus 288 ~~~~~~lp~~~~ 299 (478)
+.+....+.|..
T Consensus 1265 ~~~~~~~~~w~~ 1276 (1389)
T TIGR03443 1265 DVEIVDYVHWRK 1276 (1389)
T ss_pred CCCccCHHHHHH
Confidence 666555554443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=208.11 Aligned_cols=231 Identities=18% Similarity=0.233 Sum_probs=164.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.++++++|||||+|+||++++++|+++|++ |++++|+++..... ......+.++++|++|.++++++++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAA-VAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 466789999999999999999999999998 99998876422111 0112357789999999999887765
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHH----HHHHHHHH-HHcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNING----TCHVIEAC-LEFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~g----t~nll~aa-~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+...... ...+.+..+++|+.+ +.++++++ ++.+.+++|++||....++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~----------- 151 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEAS----------- 151 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCC-----------
Confidence 3899999999753321 233456778899999 77777777 67778899999997653211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCC-----CeeeCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLV-----PFKIGE 222 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~-----~~~~g~ 222 (478)
| ..+.|+.+|...|.+++.+..+ + ...+++++++||+.++||.....++...... +.. ..+++.
T Consensus 152 --~---~~~~y~~sk~a~~~~~~~la~~-~---~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 220 (262)
T PRK13394 152 --P---LKSAYVTAKHGLLGLARVLAKE-G---AKHNVRSHVVCPGFVRTPLVDKQIPEQAKEL--GISEEEVVKKVMLG 220 (262)
T ss_pred --C---CCcccHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCcccchhhhhhhHhhhhcc--CCChHHHHHHHHhc
Confidence 1 1257999999999988776532 1 1368999999999999986443222211100 000 012334
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+...++|++++|++++++.++... .....|+.|++++|.
T Consensus 221 ~~~~~~~~~~~dva~a~~~l~~~~---------~~~~~g~~~~~~~g~ 259 (262)
T PRK13394 221 KTVDGVFTTVEDVAQTVLFLSSFP---------SAALTGQSFVVSHGW 259 (262)
T ss_pred CCCCCCCCCHHHHHHHHHHHcCcc---------ccCCcCCEEeeCCce
Confidence 456689999999999999888631 223568899998764
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=191.57 Aligned_cols=317 Identities=20% Similarity=0.174 Sum_probs=225.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----------ccccCCCeEEEEecCCCHHHHHHHhc--C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----------HLLINHGVHCIQGDVVSKIDVEKAAR--G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----------~~~~~~~v~~v~gDl~d~~~l~~~l~--~ 78 (478)
.|..||||-||.=|+.|++.|+++||+ |.++.|++++-.- ............||++|.+.+.+.+. +
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYe-VHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik 106 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYE-VHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK 106 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCce-eeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence 357899999999999999999999999 9999988764211 11122446778899999999999987 6
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC---eEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ---RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~---r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
++-|+|+||......+..-++..-++...||.++|++.+.++.. ||-..||+.. ||.....|..|.+|..|-
T Consensus 107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSEl-yGkv~e~PQsE~TPFyPR---- 181 (376)
T KOG1372|consen 107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSEL-YGKVQEIPQSETTPFYPR---- 181 (376)
T ss_pred chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhh-cccccCCCcccCCCCCCC----
Confidence 79999999987776666667777889999999999999988632 7888888876 777777889999999885
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-CcHH----HHHHHHHcCC-CCeeeCCCCccccc
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-RHLP----RIVSLAKLGL-VPFKIGEPSVKTDW 229 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-~~~~----~~i~~~~~g~-~~~~~g~g~~~~~~ 229 (478)
+||+.+|..+--++..+.+ .+++-.|.=-.++-=.|... +++. +-+..+..|. ..+-.|+-+..|||
T Consensus 182 SPYa~aKmy~~WivvNyRE-------AYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDW 254 (376)
T KOG1372|consen 182 SPYAAAKMYGYWIVVNYRE-------AYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDW 254 (376)
T ss_pred ChhHHhhhhheEEEEEhHH-------hhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhccc
Confidence 9999999988776655543 35555443222222233322 2333 3333444443 23457999999999
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHH
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~ 309 (478)
=|..|-++|+.+.+++ ...+.|-|+.|+..|.+||++.-...+|......--.. .+..
T Consensus 255 GhA~dYVEAMW~mLQ~-------------d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv---------~~~~ 312 (376)
T KOG1372|consen 255 GHAGDYVEAMWLMLQQ-------------DSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGV---------DEVG 312 (376)
T ss_pred chhHHHHHHHHHHHhc-------------CCCCceEEecCCcccHHHHHHHHHHhhCcEEeeccccc---------cccc
Confidence 9999999999998874 22347999999999999999998888774321100000 0000
Q ss_pred HHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHH
Q 011770 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISY 368 (478)
Q Consensus 310 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~ 368 (478)
+.--+.. ..-..+-.+.|.++..+ .-|.+|+++.|||+|+.++.+-+++++..
T Consensus 313 ~n~~g~v--~V~v~~kYyRPtEVd~L----qGdasKAk~~LgW~pkv~f~eLVkeMv~~ 365 (376)
T KOG1372|consen 313 KNDDGVV--RVKVDPKYYRPTEVDTL----QGDASKAKKTLGWKPKVTFPELVKEMVAS 365 (376)
T ss_pred ccCCceE--EEEecccccCcchhhhh----cCChHHHHHhhCCCCccCHHHHHHHHHHh
Confidence 0000000 00002334456666544 35899999999999999999999998864
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=204.82 Aligned_cols=233 Identities=21% Similarity=0.211 Sum_probs=168.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~V 82 (478)
.|++|||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.+++.++++ ++|+|
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDR-VAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVV 80 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 368999999999999999999999998 99998865421110 1123468899999999998887664 47999
Q ss_pred EEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 83 FHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 83 iHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
||+||....+. +..+.+..+++|+.|+.++++++ ++.+.+++|++||.....+ . | .
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~-~---~ 144 (276)
T PRK06482 81 VSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIA------------Y-P---G 144 (276)
T ss_pred EECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccC------------C-C---C
Confidence 99999754332 22345677889999999999998 5557789999999754211 0 1 1
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCce---eCCCCCC----------cHHHHHHHHHcCCCCeeeC
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAI---YGPGEER----------HLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~v---yGp~~~~----------~~~~~i~~~~~g~~~~~~g 221 (478)
.+.|+.||...|.+++.+... + ...+++++++||+.+ ||++... ....+.+.+..+...
T Consensus 145 ~~~Y~~sK~a~~~~~~~l~~~-~---~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 216 (276)
T PRK06482 145 FSLYHATKWGIEGFVEAVAQE-V---APFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFA---- 216 (276)
T ss_pred CchhHHHHHHHHHHHHHHHHH-h---hccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCC----
Confidence 267999999999998776531 1 136899999999988 7765321 011222333332211
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLD 286 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg 286 (478)
-+.+++|++++++.+++. ...+..||+++++..+..|+++.+.+.++
T Consensus 217 ------~~~d~~~~~~a~~~~~~~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 217 ------IPGDPQKMVQAMIASADQ------------TPAPRRLTLGSDAYASIRAALSERLAALE 263 (276)
T ss_pred ------CCCCHHHHHHHHHHHHcC------------CCCCeEEecChHHHHHHHHHHHHHHHHHH
Confidence 135789999999999862 12356799999999999988888777664
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=197.64 Aligned_cols=224 Identities=17% Similarity=0.117 Sum_probs=156.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++++||||||+|+||++++++|+++|++ |++++|+....... ......+.++.+|++|.+++.++++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYR-VAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999998 99999865421110 0112357889999999999888776
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+...... ...+++..+++|+.|+.++++++.+. .-..++++||.. +..|.
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 150 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIH------------AERPL 150 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChh------------hcCCC
Confidence 4799999999643221 23345778899999999999999753 123455555422 12233
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHH-HHHHcCCCCeeeCCCCccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIV-SLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i-~~~~~g~~~~~~g~g~~~~ 227 (478)
.| .+.|+.||..+|.+++.+..+. ..+++++++||+.++||.+...++... .....+....
T Consensus 151 ~~----~~~Y~~sK~~~~~~~~~l~~~~-----~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 212 (249)
T PRK09135 151 KG----YPVYCAAKAALEMLTRSLALEL-----APEVRVNAVAPGAILWPEDGNSFDEEARQAILARTPLK--------- 212 (249)
T ss_pred CC----chhHHHHHHHHHHHHHHHHHHH-----CCCCeEEEEEeccccCccccccCCHHHHHHHHhcCCcC---------
Confidence 33 2689999999999998875421 246999999999999998654233322 2233332211
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.+.+++|+|+++..++.. .....|++||+++|+.++
T Consensus 213 ~~~~~~d~a~~~~~~~~~----------~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 213 RIGTPEDIAEAVRFLLAD----------ASFITGQILAVDGGRSLT 248 (249)
T ss_pred CCcCHHHHHHHHHHHcCc----------cccccCcEEEECCCeecc
Confidence 122489999999766542 123578999999988765
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=198.83 Aligned_cols=232 Identities=19% Similarity=0.171 Sum_probs=160.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC-HHHHHHHh-cCcCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS-KIDVEKAA-RGVDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d-~~~l~~~l-~~~D~ViHl 85 (478)
...+|+|+||||||+||++++++|+++|++ |+++.|+............+++++++|++| .+++.+.+ .++|+|||+
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 345789999999999999999999999998 999988754321111123468999999998 46787788 689999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
++..... ++...+++|..++.++++++++.+++|+|++||..+ |+.....+.++ ++.+. .....|..+|..+
T Consensus 93 ~g~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v-~g~~~~~~~~~--~~~~~-~~~~~~~~~k~~~ 164 (251)
T PLN00141 93 TGFRRSF----DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILV-NGAAMGQILNP--AYIFL-NLFGLTLVAKLQA 164 (251)
T ss_pred CCCCcCC----CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccc-cCCCcccccCc--chhHH-HHHHHHHHHHHHH
Confidence 8853211 122345789999999999999999999999999988 44322111111 11111 0112345678889
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhc
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMG 245 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~ 245 (478)
|+++++ .+++++++||+.++++.... ... ..........+++.+|+|+++..++..
T Consensus 165 e~~l~~-----------~gi~~~iirpg~~~~~~~~~------------~~~-~~~~~~~~~~~i~~~dvA~~~~~~~~~ 220 (251)
T PLN00141 165 EKYIRK-----------SGINYTIVRPGGLTNDPPTG------------NIV-MEPEDTLYEGSISRDQVAEVAVEALLC 220 (251)
T ss_pred HHHHHh-----------cCCcEEEEECCCccCCCCCc------------eEE-ECCCCccccCcccHHHHHHHHHHHhcC
Confidence 987753 47899999999999875321 111 111111223579999999999999872
Q ss_pred ccCCCCCCCCCCCCCCceEEecC---CCCCCHHHHHHHHHH
Q 011770 246 LLDDIPGQKGRPIASGQPYFVSD---GFPINTFEFIGPLLK 283 (478)
Q Consensus 246 l~~~~~~~~~~~~~~g~~yni~~---g~~~s~~e~~~~i~~ 283 (478)
+...+.++.+.+ +...++.+++..+++
T Consensus 221 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 221 -----------PESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred -----------hhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 334566777765 334688888877654
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=203.95 Aligned_cols=260 Identities=25% Similarity=0.284 Sum_probs=174.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc--------------ccccCCCeEEEEecCC------CHH
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS--------------HLLINHGVHCIQGDVV------SKI 70 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~--------------~~~~~~~v~~v~gDl~------d~~ 70 (478)
++||+||||||+|++|+++|+.+-. + |+|+.|..+.... .....++++.+.||+. +..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~k-v~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAK-VICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 4799999999999999999998755 6 9999987763211 1123467999999998 466
Q ss_pred HHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCC----CCCC
Q 011770 71 DVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNG----NESL 146 (478)
Q Consensus 71 ~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~----~E~~ 146 (478)
.+.++.+.+|+|||+||....-. ........||.||..+++.|...+.|.+.|+||++|. ........ +|+.
T Consensus 80 ~~~~La~~vD~I~H~gA~Vn~v~---pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~-~~~~~~~~~~~~~~~~ 155 (382)
T COG3320 80 TWQELAENVDLIIHNAALVNHVF---PYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVG-ETEYYSNFTVDFDEIS 155 (382)
T ss_pred HHHHHhhhcceEEecchhhcccC---cHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeec-cccccCCCcccccccc
Confidence 78888889999999999654222 2356678999999999999999999999999999994 32222111 2222
Q ss_pred CC-CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHHHH-HHcCCCCe
Q 011770 147 PY-FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIVSL-AKLGLVPF 218 (478)
Q Consensus 147 p~-~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i~~-~~~g~~~~ 218 (478)
|. .+.....+.|++||+.+|.+++++. ..|++++|+||+.|-|+...+ ++.+++.. +..|..+
T Consensus 156 ~~~~~~~~~~~GY~~SKwvaE~Lvr~A~--------~rGLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P- 226 (382)
T COG3320 156 PTRNVGQGLAGGYGRSKWVAEKLVREAG--------DRGLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAP- 226 (382)
T ss_pred ccccccCccCCCcchhHHHHHHHHHHHh--------hcCCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCC-
Confidence 22 2233345899999999999999986 469999999999999987643 44555543 4455544
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEE-ecCCCCCCHHHHHHHHHH--hcCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYF-VSDGFPINTFEFIGPLLK--TLDYD 288 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yn-i~~g~~~s~~e~~~~i~~--~lg~~ 288 (478)
+.....+.+.+|++++++........+....-+..+...-..|+ ..-|..+...++.+.+.+ ..+++
T Consensus 227 ---~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~~~~a~~~ 296 (382)
T COG3320 227 ---DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLISLDIAGYP 296 (382)
T ss_pred ---CcccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhhhhccCCc
Confidence 22344555555555554433332211000000001112223344 233788899999998887 44443
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-23 Score=195.47 Aligned_cols=226 Identities=19% Similarity=0.173 Sum_probs=162.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++|+||||||+|+||++|+++|+++|++ |+++.++....... .....++.++++|++|.+++.++++
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGAD-VVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHH
Confidence 356689999999999999999999999998 98877765422111 1123468899999999999888764
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+...... ...+.....++|+.++.++++.+ ++.+.+++|++||...+++..
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~---------- 151 (249)
T PRK12825 82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWP---------- 151 (249)
T ss_pred cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCC----------
Confidence 5799999999643322 23345677899999999999988 456788999999988743211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
+ ...|+.+|...|.++..+... + ...+++++++||+.++|+............ . ... ....
T Consensus 152 --~----~~~y~~sK~~~~~~~~~~~~~-~---~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~--~-~~~------~~~~ 212 (249)
T PRK12825 152 --G----RSNYAAAKAGLVGLTKALARE-L---AEYGITVNMVAPGDIDTDMKEATIEEAREA--K-DAE------TPLG 212 (249)
T ss_pred --C----chHHHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEEECCccCCccccccchhHHh--h-hcc------CCCC
Confidence 1 257999999999988765431 1 136899999999999999754422211111 1 000 1122
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+++.+|+++++..+++.. .....|+.|++++|.++
T Consensus 213 ~~~~~~dva~~~~~~~~~~---------~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 213 RSGTPEDIARAVAFLCSDA---------SDYITGQVIEVTGGVDV 248 (249)
T ss_pred CCcCHHHHHHHHHHHhCcc---------ccCcCCCEEEeCCCEee
Confidence 3899999999999888631 22457899999988654
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=186.56 Aligned_cols=182 Identities=29% Similarity=0.376 Sum_probs=142.9
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCCch
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGK 93 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~ 93 (478)
|+|+||||++|++++++|+++|++ |+++.|++.+. ....+++++++|+.|++++.++++++|+|||+++....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~-V~~~~R~~~~~----~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~-- 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHE-VTALVRSPSKA----EDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK-- 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSE-EEEEESSGGGH----HHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT--
T ss_pred eEEECCCChHHHHHHHHHHHCCCE-EEEEecCchhc----ccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc--
Confidence 799999999999999999999998 99999986632 11788999999999999999999999999999974221
Q ss_pred hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHc
Q 011770 94 EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSN 173 (478)
Q Consensus 94 ~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~ 173 (478)
+...+.+++++|++.+++|+|++||.+++ +.......++..+ ....|...|..+|+.+.+
T Consensus 74 -----------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~e~~~~~-- 133 (183)
T PF13460_consen 74 -----------DVDAAKNIIEAAKKAGVKRVVYLSSAGVY-RDPPGLFSDEDKP------IFPEYARDKREAEEALRE-- 133 (183)
T ss_dssp -----------HHHHHHHHHHHHHHTTSSEEEEEEETTGT-TTCTSEEEGGTCG------GGHHHHHHHHHHHHHHHH--
T ss_pred -----------cccccccccccccccccccceeeeccccC-CCCCccccccccc------chhhhHHHHHHHHHHHHh--
Confidence 17788999999999999999999999984 3221111111111 114689999999998853
Q ss_pred CCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 174 GRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 174 ~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.+++++++||+.+||+.... + .....++....++|+++|+|++++.+++
T Consensus 134 ---------~~~~~~ivrp~~~~~~~~~~-----------~--~~~~~~~~~~~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 134 ---------SGLNWTIVRPGWIYGNPSRS-----------Y--RLIKEGGPQGVNFISREDVAKAIVEALE 182 (183)
T ss_dssp ---------STSEEEEEEESEEEBTTSSS-----------E--EEESSTSTTSHCEEEHHHHHHHHHHHHH
T ss_pred ---------cCCCEEEEECcEeEeCCCcc-----------e--eEEeccCCCCcCcCCHHHHHHHHHHHhC
Confidence 47899999999999996431 0 1111144566799999999999998876
|
... |
| >PF14934 DUF4499: Domain of unknown function (DUF4499) | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-24 Score=166.12 Aligned_cols=86 Identities=34% Similarity=0.488 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhhc--CCCCcchhHHHHH
Q 011770 387 FCLIGLPALFATAYLPD--IGPVPILRTIGLFIFKSMWMMRLAFAIAVSAHVSEGVFAWCLAKKV--DPANAKGWFWQTL 462 (478)
Q Consensus 387 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 462 (478)
.+.++++.+|+..++|+ +|| +...++++++|++..+|++|.+|.++|++||+|||+||+|. |++|+.+||||||
T Consensus 2 ~~~~~~~~vf~p~~~P~~~lgp--lg~f~~~~~~~~~~~~~~~~~~a~~iHv~Ea~yA~~Lc~~~gi~~~~~~~W~~qTf 79 (91)
T PF14934_consen 2 GLGYFMWVVFWPASIPYQSLGP--LGSFVQYLVFRSPFLLRLGFWFAWLIHVGEALYAFYLCRKKGISFSNRLLWFLQTF 79 (91)
T ss_pred chHHHHHHHHhcccCCHHHcCc--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Confidence 35678889999999999 777 55559999999999999999999999999999999999999 8889999999999
Q ss_pred HhhhhHHHHHHH
Q 011770 463 ALGVFSLRLLLK 474 (478)
Q Consensus 463 ~~~~~~~~~~~~ 474 (478)
++||||+++|+|
T Consensus 80 l~G~~SL~~LlK 91 (91)
T PF14934_consen 80 LFGFPSLSLLLK 91 (91)
T ss_pred HhHHHHHHHHhC
Confidence 999999999997
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=191.87 Aligned_cols=225 Identities=20% Similarity=0.172 Sum_probs=161.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++|+|+||||+|++|.+++++|+++|++ |++++|+....... ......+.++.+|++|.+++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAE-VIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45689999999999999999999999998 99999875421110 1112358899999999999888875
Q ss_pred CcCEEEEcccCCCC----chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMS----GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~----~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+|+.... .....+....+++|+.++.++++++. +.+.+++|++||...+ +. +..
T Consensus 83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~-~~----------~~~ 151 (251)
T PRK12826 83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGP-RV----------GYP 151 (251)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhh-cc----------CCC
Confidence 68999999986543 22334556788999999999999885 4567899999998653 00 011
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHH-HHHHHcCCCCeeeCCCCcccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRI-VSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~-i~~~~~g~~~~~~g~g~~~~~ 228 (478)
+ ...|+.+|..+|.++..+... + ...+++++++||+.++||......+.. ...+..+.+. ..
T Consensus 152 ~----~~~y~~sK~a~~~~~~~~~~~-~---~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 214 (251)
T PRK12826 152 G----LAHYAASKAGLVGFTRALALE-L---AARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIPL---------GR 214 (251)
T ss_pred C----ccHHHHHHHHHHHHHHHHHHH-H---HHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCCC---------CC
Confidence 1 257999999999999776431 1 135899999999999999754432221 2222222211 25
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+++++|+++++..++... .....|+.|++.+|..
T Consensus 215 ~~~~~dva~~~~~l~~~~---------~~~~~g~~~~~~~g~~ 248 (251)
T PRK12826 215 LGEPEDIAAAVLFLASDE---------ARYITGQTLPVDGGAT 248 (251)
T ss_pred CcCHHHHHHHHHHHhCcc---------ccCcCCcEEEECCCcc
Confidence 889999999998877521 1134789999987653
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-23 Score=196.48 Aligned_cols=230 Identities=16% Similarity=0.191 Sum_probs=159.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++++++||||+|+||++++++|+++|++ |++++|++...... . ....+++++.+|++|.+++.++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAK-VVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35689999999999999999999999998 99999876532111 0 113468889999999999888775
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHH----HHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCH----VIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~n----ll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+|+...... +..+.+..+++|+.++.+ +++++++.+.+++|++||...+++..
T Consensus 81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~------------ 148 (258)
T PRK12429 81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSA------------ 148 (258)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCC------------
Confidence 5899999998643322 222345667899999554 45555566788999999987643321
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCC-----eeeCCCC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVP-----FKIGEPS 224 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~-----~~~g~g~ 224 (478)
+ .+.|+.+|...+.+++.+..+ + ...++++.++||+.+++|.....+..... ..+... ..++...
T Consensus 149 ~----~~~y~~~k~a~~~~~~~l~~~-~---~~~~i~v~~~~pg~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 218 (258)
T PRK12429 149 G----KAAYVSAKHGLIGLTKVVALE-G---ATHGVTVNAICPGYVDTPLVRKQIPDLAK--ERGISEEEVLEDVLLPLV 218 (258)
T ss_pred C----cchhHHHHHHHHHHHHHHHHH-h---cccCeEEEEEecCCCcchhhhhhhhhhcc--ccCCChHHHHHHHHhccC
Confidence 1 267999999999888766432 1 14689999999999999864332221110 001110 0122233
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..++|++++|+++++..++... .....|+.|++.+|-
T Consensus 219 ~~~~~~~~~d~a~~~~~l~~~~---------~~~~~g~~~~~~~g~ 255 (258)
T PRK12429 219 PQKRFTTVEEIADYALFLASFA---------AKGVTGQAWVVDGGW 255 (258)
T ss_pred CccccCCHHHHHHHHHHHcCcc---------ccCccCCeEEeCCCE
Confidence 4568999999999998887631 223468899998763
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=194.48 Aligned_cols=229 Identities=18% Similarity=0.209 Sum_probs=158.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHh-------cCc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAA-------RGV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l-------~~~ 79 (478)
++++|||||+|+||++++++|+++|++ |++++|++...... .....++.++++|+.|.+++.+++ .++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGAN-VVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 368999999999999999999999998 99999875421110 011346888999999999665544 467
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+|+...... ...+.+..+++|+.|+.++++++ ++.+++++|++||...+.+.+ .
T Consensus 80 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~-------------~ 146 (255)
T TIGR01963 80 DILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASP-------------F 146 (255)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCC-------------C
Confidence 99999998643221 22234566789999988888877 556788999999986643211 0
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCC-----eeeCCCCcc
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVP-----FKIGEPSVK 226 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~-----~~~g~g~~~ 226 (478)
.+.|+.+|...|.+++.+..+ + ...+++++++||+.++||.....++.... ..+... .....+...
T Consensus 147 ---~~~y~~sk~a~~~~~~~~~~~-~---~~~~i~v~~i~pg~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 217 (255)
T TIGR01963 147 ---KSAYVAAKHGLIGLTKVLALE-V---AAHGITVNAICPGYVRTPLVEKQIADQAK--TRGIPEEQVIREVMLPGQPT 217 (255)
T ss_pred ---CchhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEecCccccHHHHHHHHhhhc--ccCCCchHHHHHHHHccCcc
Confidence 256999999999998766431 1 13589999999999999853322211110 001000 012234466
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
++++|++|+|++++.+++.. .....|+.|++++|..
T Consensus 218 ~~~~~~~d~a~~~~~~~~~~---------~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 218 KRFVTVDEVAETALFLASDA---------AAGITGQAIVLDGGWT 253 (255)
T ss_pred ccCcCHHHHHHHHHHHcCcc---------ccCccceEEEEcCccc
Confidence 78999999999999988631 1134688999987653
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=195.02 Aligned_cols=235 Identities=17% Similarity=0.187 Sum_probs=165.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
.+++++++||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.++++++++ ++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGI 81 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 466789999999999999999999999998 99998875422111 1113458889999999999888775 57
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC-----CCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG-----IQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~-----v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|+|||+|+...... ...+.+..+++|+.++.++++++.+.. -.++|++||....++.+ +
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------~ 149 (257)
T PRK07067 82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEA------------L 149 (257)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCC------------C
Confidence 99999998643221 234567788999999999999997542 24799999975422211 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHc---CCCCeeeCCCCccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKL---GLVPFKIGEPSVKT 227 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~---g~~~~~~g~g~~~~ 227 (478)
...|+.||...|.+++....+ + ...++++++++|+.++++....... .+..... +.....++++...+
T Consensus 150 ----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~i~pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
T PRK07067 150 ----VSHYCATKAAVISYTQSAALA-L---IRHGINVNAIAPGVVDTPMWDQVDA-LFARYENRPPGEKKRLVGEAVPLG 220 (257)
T ss_pred ----CchhhhhHHHHHHHHHHHHHH-h---cccCeEEEEEeeCcccchhhhhhhh-hhhhccCCCHHHHHHHHhhcCCCC
Confidence 267999999999998766431 1 1478999999999999985432111 1110000 00011233445567
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.+.+.+|+|+++..++.. ......|++|++.+|+.++
T Consensus 221 ~~~~~~dva~~~~~l~s~---------~~~~~~g~~~~v~gg~~~~ 257 (257)
T PRK07067 221 RMGVPDDLTGMALFLASA---------DADYIVAQTYNVDGGNWMS 257 (257)
T ss_pred CccCHHHHHHHHHHHhCc---------ccccccCcEEeecCCEeCC
Confidence 899999999999988763 1224578999999886553
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=187.30 Aligned_cols=224 Identities=21% Similarity=0.250 Sum_probs=161.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+|+++||||+|+||++++++|.++|++ |++++|+....... . ....++.++++|++|.+++.++++ .
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFD-LAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999998 99999875422111 0 113468899999999998877664 5
Q ss_pred cCEEEEcccCCCCc------hhhhchhhhhHhhhHHHHHHHHHHHHc-----C-----CCeEEEEeccceeeCCccccCC
Q 011770 79 VDCVFHVASYGMSG------KEMLQFGRVDEVNINGTCHVIEACLEF-----G-----IQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 79 ~D~ViHlAa~~~~~------~~~~~~~~~~~vNv~gt~nll~aa~~~-----~-----v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
+|+|||+|+..... .+....+..+++|+.++.++++++.+. + +.++|++||...+++..
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----- 155 (256)
T PRK12745 81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSP----- 155 (256)
T ss_pred CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCC-----
Confidence 79999999864321 123455678899999999999998653 1 56799999987643321
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCC
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~ 222 (478)
+ .+.|+.+|...|.+++.+..+ + ..++++++++||+.++++..........+....+..
T Consensus 156 -------~----~~~Y~~sK~a~~~~~~~l~~~-~---~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~------ 214 (256)
T PRK12745 156 -------N----RGEYCISKAGLSMAAQLFAAR-L---AEEGIGVYEVRPGLIKTDMTAPVTAKYDALIAKGLV------ 214 (256)
T ss_pred -------C----CcccHHHHHHHHHHHHHHHHH-H---HHhCCEEEEEecCCCcCccccccchhHHhhhhhcCC------
Confidence 1 257999999999998877531 1 136899999999999998654433333333333221
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
....+.+.+|+++++..++.. ..+...|++|++.+|...
T Consensus 215 --~~~~~~~~~d~a~~i~~l~~~---------~~~~~~G~~~~i~gg~~~ 253 (256)
T PRK12745 215 --PMPRWGEPEDVARAVAALASG---------DLPYSTGQAIHVDGGLSI 253 (256)
T ss_pred --CcCCCcCHHHHHHHHHHHhCC---------cccccCCCEEEECCCeec
Confidence 123577999999999887752 122356899999887544
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=186.59 Aligned_cols=224 Identities=21% Similarity=0.190 Sum_probs=160.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c--cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H--LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~--~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
|++++|+||||+|+||++++++|.++|++ |++++|++..... . ......+.++.+|++|++++.++++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45689999999999999999999999999 9999987653211 0 0123457889999999998877775
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+|+...... ...+....++.|+.++.++++++. +.+++++|++||....++. .
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~------------~ 149 (246)
T PRK05653 82 ALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGN------------P 149 (246)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCC------------C
Confidence 3599999998643321 223345678899999999999985 4577899999997653321 1
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
+ ...|+.+|...|.+++.+... + ...+++++++||+.++|+..........+...... ....+
T Consensus 150 ~----~~~y~~sk~~~~~~~~~l~~~-~---~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 212 (246)
T PRK05653 150 G----QTNYSAAKAGVIGFTKALALE-L---ASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKEI---------PLGRL 212 (246)
T ss_pred C----CcHhHhHHHHHHHHHHHHHHH-H---hhcCeEEEEEEeCCcCCcchhhhhHHHHHHHHhcC---------CCCCC
Confidence 1 257999999999888776431 1 13689999999999999976432222222222111 12568
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
++.+|+++++..++... .....|+.|++++|..
T Consensus 213 ~~~~dva~~~~~~~~~~---------~~~~~g~~~~~~gg~~ 245 (246)
T PRK05653 213 GQPEEVANAVAFLASDA---------ASYITGQVIPVNGGMY 245 (246)
T ss_pred cCHHHHHHHHHHHcCch---------hcCccCCEEEeCCCee
Confidence 89999999999887531 2245788999988753
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=190.26 Aligned_cols=239 Identities=18% Similarity=0.198 Sum_probs=169.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--ccc----CCCeEEEEecCCCHHHHHHHhc-----
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLI----NHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~----~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++++++||||+|+||++++++|.++|++ |++++|+....... ... ..++.++.+|++|.+++.++++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAA-VMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998 99998865421110 000 2457889999999998888776
Q ss_pred --CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 --GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 --~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+|+.... .....+....+++|+.++.++++++.+. +..++|++||...+.+.
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------- 153 (276)
T PRK05875 84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTH---------- 153 (276)
T ss_pred cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCC----------
Confidence 67999999985321 1122345677889999999999887664 34589999998763110
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~ 224 (478)
| ..++|+.+|...|.+++.+... + ...+++++++||+.+.++...... .......... .
T Consensus 154 ~------~~~~Y~~sK~a~~~~~~~~~~~-~---~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~ 214 (276)
T PRK05875 154 R------WFGAYGVTKSAVDHLMKLAADE-L---GPSWVRVNSIRPGLIRTDLVAPITESPELSADYRAC---------T 214 (276)
T ss_pred C------CCcchHHHHHHHHHHHHHHHHH-h---cccCeEEEEEecCccCCccccccccCHHHHHHHHcC---------C
Confidence 1 1267999999999999876532 1 146899999999999877432211 1111111111 1
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC----CHHHHHHHHHHhcC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI----NTFEFIGPLLKTLD 286 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~----s~~e~~~~i~~~lg 286 (478)
....+++++|+++++..+++.. .....|++|++++|..+ +..|+++.+.+..|
T Consensus 215 ~~~~~~~~~dva~~~~~l~~~~---------~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 215 PLPRVGEVEDVANLAMFLLSDA---------ASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CCCCCcCHHHHHHHHHHHcCch---------hcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 1234678999999999888631 12345899999998776 88888888776544
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=193.36 Aligned_cols=235 Identities=19% Similarity=0.202 Sum_probs=159.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc--cCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL--INHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~--~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
..++++++|||||+|+||++++++|+++|++ |++++|++........ ....+.++.+|++|++++.++++
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4467799999999999999999999999998 9999986542211111 11246889999999998887764
Q ss_pred CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHH----cCC-CeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLE----FGI-QRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~----~~v-~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+.... .....+....+++|+.++.++++++.+ .+. +++|++||.+...+.+
T Consensus 86 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~---------- 155 (264)
T PRK12829 86 GLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYP---------- 155 (264)
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCC----------
Confidence 68999999996511 112335577889999999999998843 344 5788888865432211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCee--eCCCCc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFK--IGEPSV 225 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~--~g~g~~ 225 (478)
+ ...|+.+|...|.++...+.. + ...+++++++||+.++||......+........+..... ......
T Consensus 156 --~----~~~y~~~K~a~~~~~~~l~~~-~---~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (264)
T PRK12829 156 --G----RTPYAASKWAVVGLVKSLAIE-L---GPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKIS 225 (264)
T ss_pred --C----CchhHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCC
Confidence 1 246999999999998776531 1 135899999999999999754322211111100000000 000012
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
...+++++|+++++..++... .....|+.|++.+|..
T Consensus 226 ~~~~~~~~d~a~~~~~l~~~~---------~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 226 LGRMVEPEDIAATALFLASPA---------ARYITGQAISVDGNVE 262 (264)
T ss_pred CCCCCCHHHHHHHHHHHcCcc---------ccCccCcEEEeCCCcc
Confidence 235899999999998876521 1235688999998754
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=185.46 Aligned_cols=224 Identities=19% Similarity=0.153 Sum_probs=162.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--cc--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HL--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++++++||||+|+||++++++|+++|++ |++++|....... .. ....++.++.+|++|.++++++++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGAS-VVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999998 9999987542111 01 112357788999999998877665
Q ss_pred -CcCEEEEcccCCCC-------chhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 -GVDCVFHVASYGMS-------GKEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 -~~D~ViHlAa~~~~-------~~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+|+.... ..+..+.+..+++|+.++.++++++.+. +.+++|++||..++.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 150 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL----------- 150 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC-----------
Confidence 57999999996421 1122345667889999999999998864 356999999987631
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-HHHHHHHHHcCCCCeeeCCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-LPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-~~~~i~~~~~g~~~~~~g~g~ 224 (478)
| .+.|+.||.+.|.+++....+. ...++++++++|+.+..+..... ...+.+.+.++....
T Consensus 151 ----~----~~~Y~~sK~a~~~~~~~l~~~~----~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~------ 212 (250)
T PRK07774 151 ----Y----SNFYGLAKVGLNGLTQQLAREL----GGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPLS------ 212 (250)
T ss_pred ----C----ccccHHHHHHHHHHHHHHHHHh----CccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCCC------
Confidence 1 1579999999999998775421 14689999999999988875432 223333444443221
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
-+.+++|++++++.++... .+...|++||+.+|+.++
T Consensus 213 ---~~~~~~d~a~~~~~~~~~~---------~~~~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 213 ---RMGTPEDLVGMCLFLLSDE---------ASWITGQIFNVDGGQIIR 249 (250)
T ss_pred ---CCcCHHHHHHHHHHHhChh---------hhCcCCCEEEECCCeecc
Confidence 2456899999998887631 123568899999887654
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=195.95 Aligned_cols=234 Identities=15% Similarity=0.049 Sum_probs=163.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
++++|+||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.+++.++++ ++|+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDR-VVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDI 80 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3578999999999999999999999998 99999875421110 1113457889999999998877665 5799
Q ss_pred EEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|||+||...... +..+.+..+++|+.++.++++++ ++.+.+++|++||.+.+.+...
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~--------------- 145 (275)
T PRK08263 81 VVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFPM--------------- 145 (275)
T ss_pred EEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCCC---------------
Confidence 999999753321 33456788899999998888876 4566789999999876432111
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC---------cHHHHHHHHHcCCCCeeeCCCC
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---------HLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~---------~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
.+.|+.+|+..|.+......+ + ...|++++++||+.+..+.... ....+...+.. ..
T Consensus 146 -~~~Y~~sKaa~~~~~~~la~e-~---~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 211 (275)
T PRK08263 146 -SGIYHASKWALEGMSEALAQE-V---AEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAE---------QW 211 (275)
T ss_pred -ccHHHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHH---------HH
Confidence 257999999999888766431 1 1478999999999887764321 01111111111 11
Q ss_pred ccccc-eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHh
Q 011770 225 VKTDW-IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKT 284 (478)
Q Consensus 225 ~~~~~-v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~ 284 (478)
....+ ++.+|++++++.+++. +...++.|+.+.+.++++.++.+.+.+.
T Consensus 212 ~~~~~~~~p~dva~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 212 SERSVDGDPEAAAEALLKLVDA-----------ENPPLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred HhccCCCCHHHHHHHHHHHHcC-----------CCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence 22345 7899999999999873 2334444444445678888888887774
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=187.47 Aligned_cols=229 Identities=18% Similarity=0.156 Sum_probs=157.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++++++||||+|+||++++++|+++|++ |++++|+.+..... .....++.++++|++|++++.++++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAH-VVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999999998 99998865321100 0112357889999999999887765
Q ss_pred --CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 78 --GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
++|+|||+|+.... ...++...+++|+.++.++++++.+.- ..++|++||....+... .+..| .
T Consensus 82 ~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~-----~~~~~---~-- 149 (248)
T PRK07806 82 FGGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT-----VKTMP---E-- 149 (248)
T ss_pred CCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc-----ccCCc---c--
Confidence 58999999985422 223456678899999999999998752 24899999965422111 11111 1
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
.++|+.||..+|.+++.+..+ + ...++++++++|+.+-|+-.. .+.. ...+-..........++++++
T Consensus 150 -~~~Y~~sK~a~e~~~~~l~~~-~---~~~~i~v~~v~pg~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~ 217 (248)
T PRK07806 150 -YEPVARSKRAGEDALRALRPE-L---AEKGIGFVVVSGDMIEGTVTA----TLLN---RLNPGAIEARREAAGKLYTVS 217 (248)
T ss_pred -ccHHHHHHHHHHHHHHHHHHH-h---hccCeEEEEeCCccccCchhh----hhhc---cCCHHHHHHHHhhhcccCCHH
Confidence 257999999999999876431 1 146899999999877665221 1110 000000000001123799999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
|++++++.+++. ....|++|++++++..
T Consensus 218 dva~~~~~l~~~-----------~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 218 EFAAEVARAVTA-----------PVPSGHIEYVGGADYF 245 (248)
T ss_pred HHHHHHHHHhhc-----------cccCccEEEecCccce
Confidence 999999999872 3457899999987643
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=186.23 Aligned_cols=223 Identities=22% Similarity=0.254 Sum_probs=154.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEe-cCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~-r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++++++||||+|+||++++++|+++|++ |+++. |+....... ......++++++|++|.+++.++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGAL-VAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999998 87753 433211000 0112457889999999999888766
Q ss_pred --------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCC
Q 011770 78 --------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 --------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
++|+|||+||...... +........++|+.++.++++++.+. ..+++|++||..++.+.+
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~------ 155 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFT------ 155 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCC------
Confidence 4899999999643322 22234567789999999999998874 335899999987742110
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g 221 (478)
+ ...|+.||...|.+++.+... + ...++++++++|+.+++|-..... +.+.......
T Consensus 156 ------~----~~~Y~~sK~a~~~~~~~~~~~-~---~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~------- 214 (254)
T PRK12746 156 ------G----SIAYGLSKGALNTMTLPLAKH-L---GERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNS------- 214 (254)
T ss_pred ------C----CcchHhhHHHHHHHHHHHHHH-H---hhcCcEEEEEEECCccCcchhhhccChhHHHHHHhc-------
Confidence 1 257999999999988765431 1 136899999999999988543211 1111111111
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.....+++++|+++++..++.. ......|++|+++++
T Consensus 215 --~~~~~~~~~~dva~~~~~l~~~---------~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 215 --SVFGRIGQVEDIADAVAFLASS---------DSRWVTGQIIDVSGG 251 (254)
T ss_pred --CCcCCCCCHHHHHHHHHHHcCc---------ccCCcCCCEEEeCCC
Confidence 1223577899999999877652 112346889999876
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-21 Score=182.96 Aligned_cols=223 Identities=17% Similarity=0.130 Sum_probs=154.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-cc--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-HL--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-~~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.++++|+++||||+|+||++++++|.++|++ |++++|+...... .. .....+.++++|++|.+++.++++
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGAR-VVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 3467899999999999999999999999998 9999986431100 00 112357789999999988877665
Q ss_pred -CcCEEEEcccCCCC--c---hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMS--G---KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~--~---~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+|+.... . .+..+....+++|+.++..+++++. +.+..++|++||...+ +.
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~-~~----------- 150 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATR-GI----------- 150 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCcccc-CC-----------
Confidence 57999999985321 1 1233456667899988876555544 5566799999998652 11
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-------------CcHHHHHHHHHcC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-------------RHLPRIVSLAKLG 214 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-------------~~~~~~i~~~~~g 214 (478)
+ ..+|+.||...|.+++.+..+ + ...++++++++|+.|++|... ...+.+.+....+
T Consensus 151 --~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T PRK12823 151 --N----RVPYSAAKGGVNALTASLAFE-Y---AEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDS 220 (260)
T ss_pred --C----CCccHHHHHHHHHHHHHHHHH-h---cccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhcc
Confidence 0 146999999999999876532 1 136899999999999997311 1122333333333
Q ss_pred CCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 215 LVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 215 ~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+. .-+.+.+|+++++..++.. ......|+.|++.+|+
T Consensus 221 ~~~---------~~~~~~~dva~~~~~l~s~---------~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 221 SLM---------KRYGTIDEQVAAILFLASD---------EASYITGTVLPVGGGD 258 (260)
T ss_pred CCc---------ccCCCHHHHHHHHHHHcCc---------ccccccCcEEeecCCC
Confidence 222 2244689999999887752 1223578899998765
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-21 Score=184.94 Aligned_cols=227 Identities=19% Similarity=0.244 Sum_probs=162.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--cCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--INHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++|++|||||+|+||++++++|+++|++ |++++|+....... .. ....+.++++|++|.++++++++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 367899999999999999999999999998 99998875421110 01 12347889999999999888775
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
.+|+|||+|+...... ...+.+..+++|+.++.++++++.+. +.+++|++||.....+.
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~------------ 153 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALAR------------ 153 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCC------------
Confidence 4799999999754322 22344667789999999999998864 56799999997542110
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCCcc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
| ...+|+.+|...|.+++.+... + ..+|+++.++||+.+.++...... +.+...+....+ .
T Consensus 154 -~---~~~~y~~sK~a~~~~~~~~a~e-~---~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---------~ 216 (255)
T PRK07523 154 -P---GIAPYTATKGAVGNLTKGMATD-W---AKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTP---------A 216 (255)
T ss_pred -C---CCccHHHHHHHHHHHHHHHHHH-h---hHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCC---------C
Confidence 1 1267999999999998877531 1 146899999999999998543211 222222332221 2
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
..+..++|+|+++..++.. ......|+.+++.+|...|
T Consensus 217 ~~~~~~~dva~~~~~l~~~---------~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 217 GRWGKVEELVGACVFLASD---------ASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred CCCcCHHHHHHHHHHHcCc---------hhcCccCcEEEECCCeecc
Confidence 3467899999999888752 1224568899998886554
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=196.78 Aligned_cols=231 Identities=14% Similarity=0.066 Sum_probs=161.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc-------------cCCCeEEEEecCCCHHHHHH
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-------------INHGVHCIQGDVVSKIDVEK 74 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~-------------~~~~v~~v~gDl~d~~~l~~ 74 (478)
.+++++|+||||+|+||++++++|+++|++ |++++|+......... ...+++++.+|++|.+++.+
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 356789999999999999999999999998 9999987553211000 01358899999999999999
Q ss_pred HhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 75 ~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
++.++|+|||+||.... ...+....+++|+.|+.|++++|++.+++|||++||.++...+. .+ ..+..
T Consensus 156 aLggiDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~-----p~-~~~~s---- 223 (576)
T PLN03209 156 ALGNASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGF-----PA-AILNL---- 223 (576)
T ss_pred HhcCCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCc-----cc-cchhh----
Confidence 99999999999986421 11234556789999999999999999999999999987621110 00 01111
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
...|...|..+|+.+.. .|+++++|||+.++++.+... ..+.. ....+.......+.-+|
T Consensus 224 k~~~~~~KraaE~~L~~-----------sGIrvTIVRPG~L~tp~d~~~--------~t~~v-~~~~~d~~~gr~isreD 283 (576)
T PLN03209 224 FWGVLCWKRKAEEALIA-----------SGLPYTIVRPGGMERPTDAYK--------ETHNL-TLSEEDTLFGGQVSNLQ 283 (576)
T ss_pred HHHHHHHHHHHHHHHHH-----------cCCCEEEEECCeecCCccccc--------cccce-eeccccccCCCccCHHH
Confidence 24578889999988753 589999999999998854321 00111 11111111223578899
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC---CCHHHHHHHH
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP---INTFEFIGPL 281 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~---~s~~e~~~~i 281 (478)
+|++++.++.. .....+++|.+.++.. ..+.|++..+
T Consensus 284 VA~vVvfLasd----------~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 284 VAELMACMAKN----------RRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHHHHHcC----------chhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 99999988762 2235678999887653 3444444443
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=185.42 Aligned_cols=233 Identities=18% Similarity=0.161 Sum_probs=167.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--ccccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HLLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
+++++||||+|+||++++++|+++|++ |++++|++..... ......+++++++|++|.+++.++++ ++|+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDR-VLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999999999999999999999998 9999987542111 11123458889999999999887775 4799
Q ss_pred EEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|||+|+...... .........++|+.++.++++++. +.+.+++|++||.... . . +.
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~-~--~---------~~---- 144 (257)
T PRK07074 81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGM-A--A---------LG---- 144 (257)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhc-C--C---------CC----
Confidence 999998643221 122334556799999999998884 3456789999996542 1 0 00
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---HHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...|+.+|...|.+++.+..+. ...+++++++||+.++++..... .+.+....... ....+|+
T Consensus 145 -~~~y~~sK~a~~~~~~~~a~~~----~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 210 (257)
T PRK07074 145 -HPAYSAAKAGLIHYTKLLAVEY----GRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKW---------YPLQDFA 210 (257)
T ss_pred -CcccHHHHHHHHHHHHHHHHHH----hHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhc---------CCCCCCC
Confidence 1359999999999998775321 13589999999999999853321 11222222111 2346899
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHH
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLK 283 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~ 283 (478)
|++|++++++.++.. ......|+.+++.+|...++.|+++.+.+
T Consensus 211 ~~~d~a~~~~~l~~~---------~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 211 TPDDVANAVLFLASP---------AARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CHHHHHHHHHHHcCc---------hhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 999999999998852 12245688999999999999999887644
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=183.84 Aligned_cols=225 Identities=12% Similarity=0.074 Sum_probs=156.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
+++++++||||||+|+||++++++|+++|++ |++..++.+...... .....+.++.+|++|.+++.++++
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSL-VVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999999998 887765443211110 112346788999999998877765
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+||...... .....+..+++|+.++.++++++.+. ...++|++||...+.+ .
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~ 148 (252)
T PRK06077 81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRP------------A 148 (252)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCC------------C
Confidence 5799999999643322 11223567899999999999999865 2358999999876311 1
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH---HHHHHHHcCCCCeeeCCCCc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP---RIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~---~~i~~~~~g~~~~~~g~g~~ 225 (478)
.+ .+.|+.||...|.+++.+..+. ..++++.+++|+.+.++....... ........ ....
T Consensus 149 ~~----~~~Y~~sK~~~~~~~~~l~~~~-----~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~--------~~~~ 211 (252)
T PRK06077 149 YG----LSIYGAMKAAVINLTKYLALEL-----APKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAE--------KFTL 211 (252)
T ss_pred CC----chHHHHHHHHHHHHHHHHHHHH-----hcCCEEEEEeeCCccChHHHhhhhcccccHHHHHH--------hcCc
Confidence 11 2679999999999998775421 237999999999998875322110 00000110 1112
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
...+++++|+|++++.+++ .+...|++|++++|+.+
T Consensus 212 ~~~~~~~~dva~~~~~~~~-----------~~~~~g~~~~i~~g~~~ 247 (252)
T PRK06077 212 MGKILDPEEVAEFVAAILK-----------IESITGQVFVLDSGESL 247 (252)
T ss_pred CCCCCCHHHHHHHHHHHhC-----------ccccCCCeEEecCCeec
Confidence 2368999999999999886 23456889999988654
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=181.31 Aligned_cols=222 Identities=19% Similarity=0.199 Sum_probs=157.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhcC-----
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAARG----- 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~~----- 78 (478)
+++++++||||+|+||++++++|+++|++ |++..++.+...... ....++.++++|++|.+++.+++++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAK-VVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHF 82 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 55789999999999999999999999998 887655433211111 1123588899999999998887764
Q ss_pred --cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 79 --VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 79 --~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
+|+|||+|+...... .....+..+++|+.++.++++++.+. +..++|++||...+.+..
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 151 (247)
T PRK12935 83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGF----------- 151 (247)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCC-----------
Confidence 799999999643321 22456778899999999999999753 456899999976533211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
+ ...|+.||...|.+++....+. ...++++++++|+.+.++...............+ ...++
T Consensus 152 -~----~~~Y~~sK~a~~~~~~~l~~~~----~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~---------~~~~~ 213 (247)
T PRK12935 152 -G----QTNYSAAKAGMLGFTKSLALEL----AKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVAK---------IPKKR 213 (247)
T ss_pred -C----CcchHHHHHHHHHHHHHHHHHH----HHcCcEEEEEEeCCCcChhhhhccHHHHHHHHHh---------CCCCC
Confidence 1 2579999999988876654311 1358999999999998764332211222222211 23457
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+.|++|++++++.+++. .....|+.||+++|.
T Consensus 214 ~~~~edva~~~~~~~~~----------~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 214 FGQADEIAKGVVYLCRD----------GAYITGQQLNINGGL 245 (247)
T ss_pred CcCHHHHHHHHHHHcCc----------ccCccCCEEEeCCCc
Confidence 89999999999988762 123578999998874
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=186.83 Aligned_cols=224 Identities=16% Similarity=0.130 Sum_probs=155.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++++||||+|++|+++++.|+++|++ |++++|++...... .....+++++.+|++|++++++ ++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYL-VIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 4578999999999999999999999998 99998875421110 0112468899999999988765 43
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+...... +..+.+..+++|+.++.++++++ ++.+.+++|++||...+++..
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~----------- 148 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFP----------- 148 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCC-----------
Confidence 5799999998643321 22345667889999999988886 556678999999976543321
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-------------HHHHHHHHHcCC
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-------------LPRIVSLAKLGL 215 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-------------~~~~i~~~~~g~ 215 (478)
+ ...|+.+|...|.+++.+... + ...+++++++||+.++++..... .......+...
T Consensus 149 -~----~~~Y~~sK~~~~~~~~~l~~~-~---~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (280)
T PRK06914 149 -G----LSPYVSSKYALEGFSESLRLE-L---KPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKH- 218 (280)
T ss_pred -C----CchhHHhHHHHHHHHHHHHHH-h---hhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHH-
Confidence 1 257999999999988776421 1 14689999999999988842210 01111111100
Q ss_pred CCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 216 VPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 216 ~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
. ......+++++|+|++++.+++. +. .+..|+++++..+++
T Consensus 219 ----~--~~~~~~~~~~~dva~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~ 259 (280)
T PRK06914 219 ----I--NSGSDTFGNPIDVANLIVEIAES-----------KR-PKLRYPIGKGVKLMI 259 (280)
T ss_pred ----H--hhhhhccCCHHHHHHHHHHHHcC-----------CC-CCcccccCCchHHHH
Confidence 0 01234578999999999999873 11 234688887766554
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-21 Score=186.93 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=161.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--cCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--INHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.++++++|||||+|+||++++++|+++|++ |++++|+....... .. ...++.++++|++|.++++++++
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMK-LVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356789999999999999999999999998 99999865421111 11 12357789999999999988776
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHH----HHcCC------CeEEEEeccceeeCCccccCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEAC----LEFGI------QRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa----~~~~v------~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|+|||+||..... .+..+++..+++|+.|+.++.+++ .+.+. .++|++||...+++..
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----- 156 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPP----- 156 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC-----
Confidence 479999999975432 233455677899999999987774 33333 5899999987753321
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCC
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~ 222 (478)
...+|+.||...|.+++.+..+ +.. ...++++.++.|+.|..+-. ....+.+..+.++
T Consensus 157 -----------~~~~Y~~sK~a~~~~~~~l~~e-~~~-~~~~irv~~v~pg~i~t~~~---------~~~~~~~~~~~~~ 214 (287)
T PRK06194 157 -----------AMGIYNVSKHAVVSLTETLYQD-LSL-VTDQVGASVLCPYFVPTGIW---------QSERNRPADLANT 214 (287)
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHH-Hhh-cCCCeEEEEEEeCcccCccc---------cccccCchhcccC
Confidence 1257999999999999776432 100 13457777888876654421 1223344556788
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYD 288 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~ 288 (478)
+.+.++|+|++|.+.+.... + .++..|+++.+.+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~------------------~---------~~s~~dva~~i~~~~~~~ 253 (287)
T PRK06194 215 APPTRSQLIAQAMSQKAVGS------------------G---------KVTAEEVAQLVFDAIRAG 253 (287)
T ss_pred ccccchhhHHHHHHHhhhhc------------------c---------CCCHHHHHHHHHHHHHcC
Confidence 88999999999998875311 1 168999999999877543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.6e-21 Score=180.39 Aligned_cols=219 Identities=19% Similarity=0.248 Sum_probs=157.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--ccccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HLLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+.++++++|||||+|+||++++++|+++|++ |++++|++..... ......+++.+.+|++|.+++.++++
T Consensus 3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFG 81 (239)
T ss_pred CCCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 3466889999999999999999999999998 9999987543111 11223457888999999998887765
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+|+...... ...+....+++|+.++.++++++. +.+++++|++||...+.+.
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------- 148 (239)
T PRK12828 82 RLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG------------- 148 (239)
T ss_pred CcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC-------------
Confidence 5899999998643211 223345668899999999999885 3567899999998764221
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
| ....|+.+|...|.++....... ...+++++++||+.++++..... .. ......+
T Consensus 149 ~---~~~~y~~sk~a~~~~~~~~a~~~----~~~~i~~~~i~pg~v~~~~~~~~-----------~~------~~~~~~~ 204 (239)
T PRK12828 149 P---GMGAYAAAKAGVARLTEALAAEL----LDRGITVNAVLPSIIDTPPNRAD-----------MP------DADFSRW 204 (239)
T ss_pred C---CcchhHHHHHHHHHHHHHHHHHh----hhcCeEEEEEecCcccCcchhhc-----------CC------chhhhcC
Confidence 0 12569999999988887654311 13689999999999999842210 00 0112348
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
++++|+++++..++... .....|+.+++.+|+.+
T Consensus 205 ~~~~dva~~~~~~l~~~---------~~~~~g~~~~~~g~~~~ 238 (239)
T PRK12828 205 VTPEQIAAVIAFLLSDE---------AQAITGASIPVDGGVAL 238 (239)
T ss_pred CCHHHHHHHHHHHhCcc---------cccccceEEEecCCEeC
Confidence 99999999998887631 12346888888877643
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=184.75 Aligned_cols=216 Identities=21% Similarity=0.215 Sum_probs=148.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--cCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--INHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++|+++||||+|+||++++++|.++|++ |++.+|+.+..... .. ....+.++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 367889999999999999999999999998 99998875421110 11 12347789999999999888765
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cC-CCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FG-IQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||....+. +..+.+..+++|+.|+.++.+++.. .+ ..++|++||...+.+.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~----------- 150 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPN----------- 150 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCC-----------
Confidence 4799999999643222 2334567789999999999998863 33 4589999998763211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
| ....|+.||...+.+......+ + ...|+++++++|+.+.++...+..................+.....+
T Consensus 151 --~---~~~~Y~asK~a~~~~~~~l~~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (275)
T PRK05876 151 --A---GLGAYGVAKYGVVGLAETLARE-V---TADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQD 221 (275)
T ss_pred --C---CCchHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEEeCccccccccchhhhcCccccccccccccccccccc
Confidence 1 1267999999744444333211 1 14689999999999988754321100000001111112334444567
Q ss_pred cceeHHHHHHHHHHHHh
Q 011770 228 DWIYVDNLVLALILASM 244 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~ 244 (478)
++++++|+|++++.+++
T Consensus 222 ~~~~~~dva~~~~~ai~ 238 (275)
T PRK05876 222 DNLGVDDIAQLTADAIL 238 (275)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 89999999999999987
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=183.32 Aligned_cols=219 Identities=16% Similarity=0.135 Sum_probs=152.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
..+++++||||+|+||++++++|.++|++ |++++|+....... ......+.++.+|++|.+++.++++
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFP-VALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALG 86 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 55689999999999999999999999998 99988764321100 0112357888999999999987775
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+|+...... ...+....+++|+.++.++++++.+ .+..++|++||...+.+.
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~------------- 153 (274)
T PRK07775 87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQR------------- 153 (274)
T ss_pred CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-------------
Confidence 5799999999643221 2234456678999999999998763 345689999998763211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc----HHHHHHHHHcCCCCeeeCCCCc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH----LPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~----~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
| ..+.|+.+|...|.+++.+... + ...|++++++||+.+.++..... ...++..... .+ +..
T Consensus 154 ~---~~~~Y~~sK~a~~~l~~~~~~~-~---~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~------~~-~~~ 219 (274)
T PRK07775 154 P---HMGAYGAAKAGLEAMVTNLQME-L---EGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAK------WG-QAR 219 (274)
T ss_pred C---CcchHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHH------hc-ccc
Confidence 1 1257999999999999877531 1 13589999999998765522111 1111111111 11 123
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEec
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVS 267 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~ 267 (478)
...++|++|+|++++.+++. ...+.+||+.
T Consensus 220 ~~~~~~~~dva~a~~~~~~~------------~~~~~~~~~~ 249 (274)
T PRK07775 220 HDYFLRASDLARAITFVAET------------PRGAHVVNME 249 (274)
T ss_pred cccccCHHHHHHHHHHHhcC------------CCCCCeeEEe
Confidence 45799999999999988862 1245678875
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=177.13 Aligned_cols=221 Identities=20% Similarity=0.220 Sum_probs=157.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--------cccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--------LLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--------~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
+++|+++||||+|+||++++++|+++|++ |+++++........ ......++++.+|++|.+++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV 82 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999998 99987643321100 0112457899999999999888764
Q ss_pred ----CcCEEEEcccCCCC----chhhhchhhhhHhhhHHHHHHHHHHH-----HcCCCeEEEEeccceeeCCccccCCCC
Q 011770 78 ----GVDCVFHVASYGMS----GKEMLQFGRVDEVNINGTCHVIEACL-----EFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~----~~~~~~~~~~~~vNv~gt~nll~aa~-----~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+|+.... ..+..+....+++|+.++.++++++. +.+.+++|++||...+++..
T Consensus 83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------- 155 (249)
T PRK12827 83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNR------- 155 (249)
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCC-------
Confidence 58999999996542 12233456778999999999999998 45667999999987754321
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
+ ...|+.+|...+.+++....+ + ...+++++++||+.++++......+. ..+....+
T Consensus 156 -----~----~~~y~~sK~a~~~~~~~l~~~-~---~~~~i~~~~i~pg~v~t~~~~~~~~~--~~~~~~~~-------- 212 (249)
T PRK12827 156 -----G----QVNYAASKAGLIGLTKTLANE-L---APRGITVNAVAPGAINTPMADNAAPT--EHLLNPVP-------- 212 (249)
T ss_pred -----C----CchhHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEEECCcCCCcccccchH--HHHHhhCC--------
Confidence 1 257999999999988776532 1 13589999999999999865432221 11211111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+.+.+|+++++..++.. ......|+.+++.+|.
T Consensus 213 -~~~~~~~~~va~~~~~l~~~---------~~~~~~g~~~~~~~g~ 248 (249)
T PRK12827 213 -VQRLGEPDEVAALVAFLVSD---------AASYVTGQVIPVDGGF 248 (249)
T ss_pred -CcCCcCHHHHHHHHHHHcCc---------ccCCccCcEEEeCCCC
Confidence 11245789999998887752 1224568888887653
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-21 Score=184.36 Aligned_cols=231 Identities=16% Similarity=0.119 Sum_probs=159.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--c----cCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--L----INHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~----~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++|+||||+|+||++++++|.++|++ |++++|+........ . ....+.++.+|++|.+++.++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYR-VAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999998 999998754221110 0 01358899999999988877664
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cC-CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FG-IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+...... ...+.+..+++|+.|+.++++++.+ .+ -.++|++||....++..
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~----------- 149 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSK----------- 149 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCC-----------
Confidence 5799999998653321 2334567789999999988887765 34 35899999975422211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-CcHHHHHHHHH--cCCCCeeeCCCCc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-RHLPRIVSLAK--LGLVPFKIGEPSV 225 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-~~~~~~i~~~~--~g~~~~~~g~g~~ 225 (478)
...+|+.||++.+.+++.+..+ + ...|+++.++||+.++++... ..++.+..... .+.....++++..
T Consensus 150 -----~~~~Y~~sKaa~~~l~~~la~e-~---~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
T PRK12384 150 -----HNSGYSAAKFGGVGLTQSLALD-L---AEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVP 220 (259)
T ss_pred -----CCchhHHHHHHHHHHHHHHHHH-H---HHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCc
Confidence 1257999999999888776431 1 147899999999999887542 22232221110 0000011233345
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.+.+++.+|+++++..++.. ......|++|++.+|+.
T Consensus 221 ~~~~~~~~dv~~~~~~l~~~---------~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 221 LKRGCDYQDVLNMLLFYASP---------KASYCTGQSINVTGGQV 257 (259)
T ss_pred ccCCCCHHHHHHHHHHHcCc---------ccccccCceEEEcCCEE
Confidence 57889999999999877652 12235789999998764
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=178.26 Aligned_cols=224 Identities=18% Similarity=0.144 Sum_probs=157.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++++||||+|+||++++++|+++|++ |++++|++....... ....++.++++|++|.+++.++++ +
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56789999999999999999999999999 999999864321100 112457899999999999988775 4
Q ss_pred cCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 79 ~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
+|+|||+|+..... .+..+.+..+++|+.++.++++.+.+ .+.+++|++||...+.+..
T Consensus 82 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 149 (251)
T PRK07231 82 VDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRP------------ 149 (251)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCC------------
Confidence 69999999864222 12344567889999998877777664 5678999999987742211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH----HHHHHHHcCCCCeeeCCCCc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP----RIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~----~~i~~~~~g~~~~~~g~g~~ 225 (478)
+ ...|+.+|...+.+++.+..+ + +..++++++++|+.+.++....... ........+ ..
T Consensus 150 ~----~~~y~~sk~~~~~~~~~~a~~-~---~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---------~~ 212 (251)
T PRK07231 150 G----LGWYNASKGAVITLTKALAAE-L---GPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLAT---------IP 212 (251)
T ss_pred C----chHHHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcC---------CC
Confidence 1 257999999999888776532 1 1358999999999997764332211 111111111 12
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
...+++++|+|++++.++... .....|+.+.+.+|..
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~---------~~~~~g~~~~~~gg~~ 249 (251)
T PRK07231 213 LGRLGTPEDIANAALFLASDE---------ASWITGVTLVVDGGRC 249 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCcc---------ccCCCCCeEEECCCcc
Confidence 345789999999999887521 1234577777876643
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=181.08 Aligned_cols=223 Identities=21% Similarity=0.221 Sum_probs=156.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++++||||+|+||++|+++|+++|++ |++++|+....... ......+.++++|++|.+++.++++ +
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999999998 99998875421110 1113457899999999999888765 6
Q ss_pred cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+|+..... .+..+.+..+++|+.++.++.+++ ++.+.+++|++||....++...
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~------------ 149 (252)
T PRK06138 82 LDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRG------------ 149 (252)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCC------------
Confidence 89999999964322 123345667899999997777665 4567789999999876443211
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-----HHHHHHHcCCCCeeeCCCCc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-----RIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-----~~i~~~~~g~~~~~~g~g~~ 225 (478)
..+|+.+|...|.+++.+..+ + ...+++++++||+.++++.....+. ........+. ..
T Consensus 150 ----~~~Y~~sK~a~~~~~~~l~~~-~---~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~ 213 (252)
T PRK06138 150 ----RAAYVASKGAIASLTRAMALD-H---ATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR--------HP 213 (252)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHH-H---HhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc--------CC
Confidence 257999999999998876531 1 1358999999999999986432211 1111111111 11
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+++++|++++++.++... .....|+.+.+.+|
T Consensus 214 ~~~~~~~~d~a~~~~~l~~~~---------~~~~~g~~~~~~~g 248 (252)
T PRK06138 214 MNRFGTAEEVAQAALFLASDE---------SSFATGTTLVVDGG 248 (252)
T ss_pred CCCCcCHHHHHHHHHHHcCch---------hcCccCCEEEECCC
Confidence 224789999999999887631 22456777777655
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=178.77 Aligned_cols=228 Identities=20% Similarity=0.215 Sum_probs=161.5
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
|+++ +++++++++||||+|+||+++++.|.++|++ |++++|+..... ......+.+++.+|++|.+++.++++
T Consensus 1 ~~~~--~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~-V~~~~r~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 76 (245)
T PRK07060 1 MNMA--FDFSGKSVLVTGASSGIGRACAVALAQRGAR-VVAAARNAAALD-RLAGETGCEPLRLDVGDDAAIRAALAAAG 76 (245)
T ss_pred CCcc--cccCCCEEEEeCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHHhCCeEEEecCCCHHHHHHHHHHhC
Confidence 5544 3467789999999999999999999999998 999998654211 11122246788999999998888876
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+...... ...+.+..+++|+.++.++++++.+. + .+++|++||...+++...
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 146 (245)
T PRK07060 77 AFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPD---------- 146 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCC----------
Confidence 4899999999653321 22345566789999999999998764 2 368999999876433211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH--HHHHHHHcCCCCeeeCCCCcc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP--RIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~--~~i~~~~~g~~~~~~g~g~~~ 226 (478)
...|+.+|...|.+++.+... + ...+++++.+||+.++++....... .....+... ...
T Consensus 147 ------~~~y~~sK~a~~~~~~~~a~~-~---~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~---------~~~ 207 (245)
T PRK07060 147 ------HLAYCASKAALDAITRVLCVE-L---GPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAA---------IPL 207 (245)
T ss_pred ------CcHhHHHHHHHHHHHHHHHHH-H---hhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhc---------CCC
Confidence 257999999999999876532 1 1358999999999999986432111 111111111 112
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..+++++|+++++..++.. ......|+.+++.+|.
T Consensus 208 ~~~~~~~d~a~~~~~l~~~---------~~~~~~G~~~~~~~g~ 242 (245)
T PRK07060 208 GRFAEVDDVAAPILFLLSD---------AASMVSGVSLPVDGGY 242 (245)
T ss_pred CCCCCHHHHHHHHHHHcCc---------ccCCccCcEEeECCCc
Confidence 4589999999999988863 1224568888887664
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-20 Score=174.30 Aligned_cols=223 Identities=20% Similarity=0.207 Sum_probs=157.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---c--cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---H--LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~--~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++++++||||||+||+++++.|+++|++ |+++.+++..... . ......+.++++|++|.+++.++++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEF 81 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999998 9888776542110 0 1123467889999999998887765
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+...... ........+++|+.++.++++++.+. +.+++|++||...+++...
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~---------- 151 (248)
T PRK05557 82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPG---------- 151 (248)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCCC----------
Confidence 5799999998643221 22345567889999999999988764 5568999999755433211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
...|+.+|...|.+++.+... + ...+++++++||+.+.++......+........+.. ...
T Consensus 152 ------~~~y~~sk~a~~~~~~~~a~~-~---~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 212 (248)
T PRK05557 152 ------QANYAASKAGVIGFTKSLARE-L---ASRGITVNAVAPGFIETDMTDALPEDVKEAILAQIP---------LGR 212 (248)
T ss_pred ------CchhHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEecCccCCccccccChHHHHHHHhcCC---------CCC
Confidence 256999999999888765431 1 146899999999988766544333333333332221 124
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+.+++|+++++..++.. ......|+.|++++|.
T Consensus 213 ~~~~~~va~~~~~l~~~---------~~~~~~g~~~~i~~~~ 245 (248)
T PRK05557 213 LGQPEEIASAVAFLASD---------EAAYITGQTLHVNGGM 245 (248)
T ss_pred CcCHHHHHHHHHHHcCc---------ccCCccccEEEecCCc
Confidence 67899999999877652 1234578999998763
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=180.87 Aligned_cols=260 Identities=22% Similarity=0.235 Sum_probs=181.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCcccc-------------------cccCCCeEEEEecCC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWSH-------------------LLINHGVHCIQGDVV 67 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~~-------------------~~~~~~v~~v~gDl~ 67 (478)
.++|+|+|||||||+|.-|++.|+..- ..+++.+-|.+...... .....++..+.||+.
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 467999999999999999999999763 33477776665532110 001245788999998
Q ss_pred C------HHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCc--c
Q 011770 68 S------KIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGK--E 138 (478)
Q Consensus 68 d------~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~--~ 138 (478)
+ .+++....+++|+|||+||...... ..+....+|+.||.++++.|++.. .+-+||+||..+..... .
T Consensus 90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrFde---~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~ 166 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEVNIVIHSAATVRFDE---PLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIE 166 (467)
T ss_pred CcccCCChHHHHHHHhcCCEEEEeeeeeccch---hhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccccc
Confidence 5 3556667789999999999654332 235567899999999999999984 77899999987741110 0
Q ss_pred ccC--------------CCCCCC------CCC--CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCcee
Q 011770 139 IVN--------------GNESLP------YFP--IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIY 196 (478)
Q Consensus 139 ~~~--------------~~E~~p------~~p--~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vy 196 (478)
..+ .+|+.. ..| ...+++.|.-||+.+|+++.+.. ++++.+|+||+.|.
T Consensus 167 E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~---------~~lPivIiRPsiI~ 237 (467)
T KOG1221|consen 167 EKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA---------ENLPLVIIRPSIIT 237 (467)
T ss_pred ccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc---------cCCCeEEEcCCcee
Confidence 000 111110 001 12346889999999999998874 68999999999999
Q ss_pred CCCCCCcHH---------HHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEec
Q 011770 197 GPGEERHLP---------RIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVS 267 (478)
Q Consensus 197 Gp~~~~~~~---------~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~ 267 (478)
......+.+ .++-...+|......++++...|+|.||.+|++++.++-+.... .+...-.+||++
T Consensus 238 st~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~------~~~~~~~IY~~t 311 (467)
T KOG1221|consen 238 STYKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGN------SKEKTPPIYHLT 311 (467)
T ss_pred ccccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhcc------CCCCCCcEEEec
Confidence 876543211 12222344555556788999999999999999999776421111 111234599998
Q ss_pred CC--CCCCHHHHHHHHHHhcC
Q 011770 268 DG--FPINTFEFIGPLLKTLD 286 (478)
Q Consensus 268 ~g--~~~s~~e~~~~i~~~lg 286 (478)
++ .++++.++.+...+...
T Consensus 312 ss~~Np~t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 312 SSNDNPVTWGDFIELALRYFE 332 (467)
T ss_pred ccccCcccHHHHHHHHHHhcc
Confidence 75 67999999999888765
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=180.21 Aligned_cols=223 Identities=17% Similarity=0.134 Sum_probs=156.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++|+|+||||+|+||++++++|+++|++ |++++|++...... . ....++.++.+|++|.++++++++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGAD-VVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999999998 99999875421111 0 013457889999999998877664
Q ss_pred CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+|+.... ..+..+....+++|+.++.++++++.+. ..+++|++||...+.+. .
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~------------~ 149 (258)
T PRK07890 82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQ------------P 149 (258)
T ss_pred CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCC------------C
Confidence 57999999986322 1233556788999999999999999763 22589999997653211 0
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-----------HHHHHHHcCCCCe
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-----------RIVSLAKLGLVPF 218 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-----------~~i~~~~~g~~~~ 218 (478)
+ ...|+.+|...|.+++.+..+ + ...+++++++||+.++||.....+. .+.....+.
T Consensus 150 ~----~~~Y~~sK~a~~~l~~~~a~~-~---~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 217 (258)
T PRK07890 150 K----YGAYKMAKGALLAASQSLATE-L---GPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN---- 217 (258)
T ss_pred C----cchhHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc----
Confidence 1 257999999999999876532 1 1368999999999999996432211 111111111
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.....+.+++|++++++.++... .....|+.+.+.+|.
T Consensus 218 -----~~~~~~~~~~dva~a~~~l~~~~---------~~~~~G~~i~~~gg~ 255 (258)
T PRK07890 218 -----SDLKRLPTDDEVASAVLFLASDL---------ARAITGQTLDVNCGE 255 (258)
T ss_pred -----CCccccCCHHHHHHHHHHHcCHh---------hhCccCcEEEeCCcc
Confidence 12234778999999998887631 123567777766554
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=180.73 Aligned_cols=209 Identities=17% Similarity=0.111 Sum_probs=145.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
++++++||||+|+||++++++|+++|++ |++++|++...... .....++..+.+|++|.+++.++++ ++|+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~ 81 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHR-VVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDV 81 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCE-EEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4678999999999999999999999998 99999875421111 1122457889999999999888776 4799
Q ss_pred EEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|||+|+....+. ...+....+++|+.|+.++++++. +.+.+++|++||...+.+.+ +
T Consensus 82 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~------------~--- 146 (277)
T PRK06180 82 LVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMP------------G--- 146 (277)
T ss_pred EEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCC------------C---
Confidence 999999743322 223345678999999999999864 34567999999987642211 1
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-------cHHHH---HHHHHcCCCCeeeCCC
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-------HLPRI---VSLAKLGLVPFKIGEP 223 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-------~~~~~---i~~~~~g~~~~~~g~g 223 (478)
...|+.+|...|.+++....+ + ...|++++++||+.++++.... ..+.. ......... ..
T Consensus 147 -~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 216 (277)
T PRK06180 147 -IGYYCGSKFALEGISESLAKE-V---APFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQARE---AK-- 216 (277)
T ss_pred -cchhHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHH---hh--
Confidence 267999999999988766431 1 1368999999999998764221 11111 111110000 00
Q ss_pred CccccceeHHHHHHHHHHHHhc
Q 011770 224 SVKTDWIYVDNLVLALILASMG 245 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~ 245 (478)
....+..++|++++++.+++.
T Consensus 217 -~~~~~~~~~dva~~~~~~l~~ 237 (277)
T PRK06180 217 -SGKQPGDPAKAAQAILAAVES 237 (277)
T ss_pred -ccCCCCCHHHHHHHHHHHHcC
Confidence 112356799999999998873
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=176.33 Aligned_cols=221 Identities=19% Similarity=0.182 Sum_probs=153.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---c--cCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---L--INHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~--~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++||||+|+||++++++|.++|++ |+..+++++...... . ....+.++++|++|.+++.++++ +
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~-vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYA-VCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCe-EEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999998 887765443211100 1 12357789999999999888775 5
Q ss_pred cCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHcC-------CCeEEEEeccceeeCCccccCCCCCC
Q 011770 79 VDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEFG-------IQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 79 ~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~~-------v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
+|+|||+|+..... ....+....+++|+.++.++++++.+.- -.++|++||...+++.+.
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------- 152 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPG-------- 152 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCC--------
Confidence 79999999964321 1233456788999999999999887641 136999999876443211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeCCCCc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
....|+.+|...|.+++.+..+ + ..++++++++||+.++||.... ..+..+.......+..
T Consensus 153 -------~~~~Y~~sKaa~~~~~~~la~~-~---~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~~------- 214 (248)
T PRK06123 153 -------EYIDYAASKGAIDTMTIGLAKE-V---AAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPMG------- 214 (248)
T ss_pred -------CccchHHHHHHHHHHHHHHHHH-h---cccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCCC-------
Confidence 0135999999999998766432 1 1468999999999999995432 2233333333322211
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
-+.+++|++++++.++... .....|+.|++.+|
T Consensus 215 --~~~~~~d~a~~~~~l~~~~---------~~~~~g~~~~~~gg 247 (248)
T PRK06123 215 --RGGTAEEVARAILWLLSDE---------ASYTTGTFIDVSGG 247 (248)
T ss_pred --CCcCHHHHHHHHHHHhCcc---------ccCccCCEEeecCC
Confidence 1236899999999877631 12356889999765
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=182.27 Aligned_cols=211 Identities=18% Similarity=0.129 Sum_probs=145.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDCV 82 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~V 82 (478)
++++++||||+|+||++++++|.++|++ |++++|+.... ......+++++++|++|.++++++++ ++|+|
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~l--~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYT-VYGAARRVDKM--EDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHH--HHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 4689999999999999999999999998 99999875421 11223468899999999999988776 68999
Q ss_pred EEcccCCCCch----hhhchhhhhHhhhHHH----HHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 83 FHVASYGMSGK----EMLQFGRVDEVNINGT----CHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 83 iHlAa~~~~~~----~~~~~~~~~~vNv~gt----~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
||+|+....+. +..+.+..+++|+.++ ..+++.+++.+..++|++||.....+. |.
T Consensus 79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-------------~~--- 142 (273)
T PRK06182 79 VNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYT-------------PL--- 142 (273)
T ss_pred EECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCC-------------CC---
Confidence 99999754322 3345677889999985 455556667777899999997542110 11
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCC--------eeeCCCCcc
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVP--------FKIGEPSVK 226 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~--------~~~g~g~~~ 226 (478)
...|+.||...+.+.+....+ + ...+++++++||+.+.++........+.... .+... ..+......
T Consensus 143 ~~~Y~~sKaa~~~~~~~l~~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 217 (273)
T PRK06182 143 GAWYHATKFALEGFSDALRLE-V---APFGIDVVVIEPGGIKTEWGDIAADHLLKTS-GNGAYAEQAQAVAASMRSTYGS 217 (273)
T ss_pred ccHhHHHHHHHHHHHHHHHHH-h---cccCCEEEEEecCCcccccchhhhhhhcccc-cccchHHHHHHHHHHHHHhhcc
Confidence 246999999999987654321 1 1478999999999999875321110000000 00000 001111123
Q ss_pred ccceeHHHHHHHHHHHHh
Q 011770 227 TDWIYVDNLVLALILASM 244 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~ 244 (478)
..+.+.+|+|++++.++.
T Consensus 218 ~~~~~~~~vA~~i~~~~~ 235 (273)
T PRK06182 218 GRLSDPSVIADAISKAVT 235 (273)
T ss_pred ccCCCHHHHHHHHHHHHh
Confidence 457799999999999987
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=175.01 Aligned_cols=227 Identities=19% Similarity=0.169 Sum_probs=161.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++++++|||||+|+||++++++|+++|++ |++++|+.+..... ......+.++++|++|.+++.++++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGAR-VVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999998 99998865421100 0112357789999999999876654
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+..... .+....+..+++|+.++.++++++.+. +.+++|++||...+++..+.
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~-------- 159 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPE-------- 159 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCcc--------
Confidence 579999999864221 122345667889999999999998765 56799999998775443211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
..+ ...|+.+|+..|.+++.+..+ + ..+++++.+++|+.+-.+.....++.+.+.+..+.+...
T Consensus 160 ~~~----~~~Y~~sKa~~~~~~~~~a~~-~---~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~-------- 223 (259)
T PRK08213 160 VMD----TIAYNTSKGAVINFTRALAAE-W---GPHGIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTPLGR-------- 223 (259)
T ss_pred ccC----cchHHHHHHHHHHHHHHHHHH-h---cccCEEEEEEecCcCCCcchhhhhHHHHHHHHhcCCCCC--------
Confidence 011 257999999999999876532 1 136899999999988777555555555555444443322
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
+...+|++.++..++.. ......|+.+++.+|
T Consensus 224 -~~~~~~va~~~~~l~~~---------~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 224 -LGDDEDLKGAALLLASD---------ASKHITGQILAVDGG 255 (259)
T ss_pred -CcCHHHHHHHHHHHhCc---------cccCccCCEEEECCC
Confidence 23468999888777652 122457888888765
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=174.42 Aligned_cols=222 Identities=22% Similarity=0.255 Sum_probs=156.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++|||||+|+||++++++|+++|++ |++++|+....... .....+++++++|++|.++++++++ +
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5689999999999999999999999998 99998875422110 1113468899999999999888765 5
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+|+...... +..+.+..+++|+.++.++++++. +.+.+++|++||...+.+...
T Consensus 81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~------------ 148 (250)
T TIGR03206 81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSG------------ 148 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCC------------
Confidence 899999998642211 223345678999999999988876 456679999999877433211
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc------HHHHHHHHHcCCCCeeeCCCC
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~------~~~~i~~~~~g~~~~~~g~g~ 224 (478)
...|+.+|.+.|.+++.+..+. ...+++++++||+.++++..... ...+...+....+
T Consensus 149 ----~~~Y~~sK~a~~~~~~~la~~~----~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 212 (250)
T TIGR03206 149 ----EAVYAACKGGLVAFSKTMAREH----ARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIP-------- 212 (250)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHH----hHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCC--------
Confidence 2569999999998887765321 13589999999999998842211 0112222222221
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|+|+++..++.. ......|+++++.+|.
T Consensus 213 -~~~~~~~~dva~~~~~l~~~---------~~~~~~g~~~~~~~g~ 248 (250)
T TIGR03206 213 -LGRLGQPDDLPGAILFFSSD---------DASFITGQVLSVSGGL 248 (250)
T ss_pred -ccCCcCHHHHHHHHHHHcCc---------ccCCCcCcEEEeCCCc
Confidence 11245678999999987652 1224568899997663
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=178.52 Aligned_cols=227 Identities=14% Similarity=0.162 Sum_probs=160.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----c--ccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----L--LINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~--~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
.+++|++|||||+|+||++++++|.++|++ |++.+++....... . .....+.++++|++|.++++++++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGAD-IALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999998 98876654321100 0 112357789999999998877764
Q ss_pred ---CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+..... .+..+.+..+++|+.|+.++++++.+. .-.++|++||...+.+..
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 200 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP---------- 200 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC----------
Confidence 589999999964221 134567888999999999999999864 124899999988742211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
....|+.||.+.|.+++....+ + ...|+++++++|+.|++|.... ........+.... .
T Consensus 201 ------~~~~Y~asK~a~~~~~~~la~e-l---~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~---------p 261 (300)
T PRK06128 201 ------TLLDYASTKAAIVAFTKALAKQ-V---AEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSET---------P 261 (300)
T ss_pred ------CchhHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCC---------C
Confidence 0246999999999999776532 1 1468999999999999986422 1122222222221 2
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
...+.+.+|++.++..++.. ......|+.|++.+|..++
T Consensus 262 ~~r~~~p~dva~~~~~l~s~---------~~~~~~G~~~~v~gg~~~~ 300 (300)
T PRK06128 262 MKRPGQPVEMAPLYVLLASQ---------ESSYVTGEVFGVTGGLLLS 300 (300)
T ss_pred CCCCcCHHHHHHHHHHHhCc---------cccCccCcEEeeCCCEeCc
Confidence 23466889999999887652 1223568999999886543
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=172.79 Aligned_cols=207 Identities=19% Similarity=0.206 Sum_probs=145.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-ccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++++++||||+|+||++++++|.++|++ |++++|+........ .....+.++++|++|.+++.++++ ++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGAR-VAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 456789999999999999999999999998 999988643211111 113357789999999887765543 68
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|+|||+|+...... ...++...+++|+.++.++++++.+. ...++|++||....++...
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~~--------------- 146 (249)
T PRK06500 82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMPN--------------- 146 (249)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCCC---------------
Confidence 99999998643221 23456778899999999999999853 2347888888654333211
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
.++|+.+|...|.+++.+..+ + ...+++++++||+.+++|... .....+.+.+..+.+..
T Consensus 147 -~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 212 (249)
T PRK06500 147 -SSVYAASKAALLSLAKTLSGE-L---LPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLG--------- 212 (249)
T ss_pred -ccHHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCC---------
Confidence 267999999999999766431 1 146899999999999998421 11223333333333221
Q ss_pred cceeHHHHHHHHHHHHh
Q 011770 228 DWIYVDNLVLALILASM 244 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~ 244 (478)
-+...+|+++++..++.
T Consensus 213 ~~~~~~~va~~~~~l~~ 229 (249)
T PRK06500 213 RFGTPEEIAKAVLYLAS 229 (249)
T ss_pred CCcCHHHHHHHHHHHcC
Confidence 23478999999988765
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=174.33 Aligned_cols=228 Identities=17% Similarity=0.108 Sum_probs=158.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+.+++|++|||||+|+||++++++|+++|++ |++++|+.. ......+.++++|++|.+++.++++ ++
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~-v~~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAK-VIGFDQAFL-----TQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPL 77 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecchh-----hhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3466789999999999999999999999998 999998751 1224468889999999999988776 37
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+|+...... +..+....+++|+.++.++++++.. .+..++|++||.....+ ..+
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~------------~~~- 144 (252)
T PRK08220 78 DVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVP------------RIG- 144 (252)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccC------------CCC-
Confidence 99999999643321 2345677889999999999999864 34568999999754211 111
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHH--HHHHHHcCCCCeeeCCCCccccc
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPR--IVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~--~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
.+.|+.+|...|.+++.+..+ + ...++++++++|+.+++|........ .......+.. ...........+
T Consensus 145 ---~~~Y~~sK~a~~~~~~~la~e-~---~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 216 (252)
T PRK08220 145 ---MAAYGASKAALTSLAKCVGLE-L---APYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFP-EQFKLGIPLGKI 216 (252)
T ss_pred ---CchhHHHHHHHHHHHHHHHHH-h---hHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHH-HHHhhcCCCccc
Confidence 267999999999999766532 1 13689999999999999864321100 0000000000 000111223568
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
++++|+|++++.++.. ......|++..+.+|.
T Consensus 217 ~~~~dva~~~~~l~~~---------~~~~~~g~~i~~~gg~ 248 (252)
T PRK08220 217 ARPQEIANAVLFLASD---------LASHITLQDIVVDGGA 248 (252)
T ss_pred CCHHHHHHHHHHHhcc---------hhcCccCcEEEECCCe
Confidence 9999999999988752 1224567777776654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=173.45 Aligned_cols=225 Identities=20% Similarity=0.230 Sum_probs=159.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
..+++++++||||+|+||++++++|.++|++ |++++|++...... .....+++++++|++|.++++++++
T Consensus 3 ~~~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 3 SNLAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3466799999999999999999999999998 99998765421110 0112458899999999999887774
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+...... +....+..+++|+.++.++++++.+. +..++|++||...+.+..
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 151 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAP---------- 151 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCC----------
Confidence 5899999999643221 22344567789999999999998754 334999999976532211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-HHHHHHHcCCCCeeeCCCCcc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-RIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-~~i~~~~~g~~~~~~g~g~~~ 226 (478)
+ ...|+.+|...|.+++....+ + ...++++++++|+.+..+....... ........+ ...
T Consensus 152 --~----~~~y~~sK~~~~~~~~~l~~~-~---~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~---------~~~ 212 (250)
T PRK12939 152 --K----LGAYVASKGAVIGMTRSLARE-L---GGRGITVNAIAPGLTATEATAYVPADERHAYYLKG---------RAL 212 (250)
T ss_pred --C----cchHHHHHHHHHHHHHHHHHH-H---hhhCEEEEEEEECCCCCccccccCChHHHHHHHhc---------CCC
Confidence 0 156999999999999866431 1 1368999999999998775432111 222222221 223
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..+++++|++++++.++... .....|+.+.+.+|.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~---------~~~~~G~~i~~~gg~ 247 (250)
T PRK12939 213 ERLQVPDDVAGAVLFLLSDA---------ARFVTGQLLPVNGGF 247 (250)
T ss_pred CCCCCHHHHHHHHHHHhCcc---------ccCccCcEEEECCCc
Confidence 45789999999999988631 123578888888764
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=171.13 Aligned_cols=228 Identities=18% Similarity=0.173 Sum_probs=157.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+..+++|+++||||+|+||++++++|.++|++ |++++|+... ....++.++++|++|.++++++++ +
T Consensus 4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (260)
T PRK06523 4 FLELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSRPD-----DLPEGVEFVAADLTTAEGCAAVARAVLERLGG 77 (260)
T ss_pred CcCCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCChhh-----hcCCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 34577899999999999999999999999998 9999987542 123468889999999998776553 5
Q ss_pred cCEEEEcccCCCC------chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 79 VDCVFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 79 ~D~ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
+|+|||+|+.... ..+..+.+..+++|+.++.++.+++. +.+..++|++||...+.+.
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------ 145 (260)
T PRK06523 78 VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPL------------ 145 (260)
T ss_pred CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCC------------
Confidence 7999999985321 12334567788999999988876654 4455689999997653110
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHH-----------HHHHcCCCC
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIV-----------SLAKLGLVP 217 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i-----------~~~~~g~~~ 217 (478)
......|+.+|...|.+++..... + ...++++.+++|+.|.+|.......++. ..+....
T Consensus 146 ---~~~~~~Y~~sK~a~~~l~~~~a~~-~---~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (260)
T PRK06523 146 ---PESTTAYAAAKAALSTYSKSLSKE-V---APKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSL-- 216 (260)
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHh--
Confidence 001267999999999998776532 1 1368999999999999885432221111 1110000
Q ss_pred eeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 218 FKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 218 ~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
+ +.....+...+|+++++..++.. ......|+.+.+.+|...+
T Consensus 217 ---~-~~p~~~~~~~~~va~~~~~l~s~---------~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 217 ---G-GIPLGRPAEPEEVAELIAFLASD---------RAASITGTEYVIDGGTVPT 259 (260)
T ss_pred ---c-cCccCCCCCHHHHHHHHHHHhCc---------ccccccCceEEecCCccCC
Confidence 0 00112345689999999887752 1224668899998876544
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=172.02 Aligned_cols=197 Identities=16% Similarity=0.102 Sum_probs=137.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~ViHlA 86 (478)
+||+++||||+|+||++++++|+++ ++ |++++|+............+++++++|++|.+++.++++ ++|+|||+|
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~-V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~a 79 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-HT-LLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNA 79 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-CC-EEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECC
Confidence 3579999999999999999999999 88 999998754211111122368899999999999998887 589999999
Q ss_pred cCCCCch----hhhchhhhhHhhhHHH----HHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCch
Q 011770 87 SYGMSGK----EMLQFGRVDEVNINGT----CHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSY 158 (478)
Q Consensus 87 a~~~~~~----~~~~~~~~~~vNv~gt----~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y 158 (478)
+...... ...+.....++|+.++ .++++++++.+ +++|++||...+.+.. + ..+|
T Consensus 80 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~v~~ss~~~~~~~~------------~----~~~y 142 (227)
T PRK08219 80 GVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH-GHVVFINSGAGLRANP------------G----WGSY 142 (227)
T ss_pred CcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEcchHhcCcCC------------C----CchH
Confidence 9643221 1223455678999984 45555555444 6899999987632211 1 2579
Q ss_pred HhhHHHHHHHHHHHcCCCCccCCCCc-ceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 159 GRSKSVAEQLVLKSNGRPFKKNNRKC-LYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 159 ~~sK~~aE~~v~~~~~~~~~~~~~~g-l~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
+.+|...|.++...... ..+ +++.+++|+.+.++.... +.. ..+. ......+++++|+++
T Consensus 143 ~~~K~a~~~~~~~~~~~------~~~~i~~~~i~pg~~~~~~~~~----~~~--~~~~-------~~~~~~~~~~~dva~ 203 (227)
T PRK08219 143 AASKFALRALADALREE------EPGNVRVTSVHPGRTDTDMQRG----LVA--QEGG-------EYDPERYLRPETVAK 203 (227)
T ss_pred HHHHHHHHHHHHHHHHH------hcCCceEEEEecCCccchHhhh----hhh--hhcc-------ccCCCCCCCHHHHHH
Confidence 99999999888765431 123 899999998876653221 111 0111 112346899999999
Q ss_pred HHHHHHh
Q 011770 238 ALILASM 244 (478)
Q Consensus 238 a~~~a~~ 244 (478)
+++.+++
T Consensus 204 ~~~~~l~ 210 (227)
T PRK08219 204 AVRFAVD 210 (227)
T ss_pred HHHHHHc
Confidence 9999987
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=173.20 Aligned_cols=226 Identities=19% Similarity=0.186 Sum_probs=155.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+.++++|+++||||+|+||++++++|+++|++ |++++++....... ......+.++++|++|.+++.++++
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQ-VVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 44577899999999999999999999999998 99998765421111 1112457889999999988866554
Q ss_pred CcCEEEEcccCCCCc------hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG------KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~------~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+..... .+..++...+++|+.++.++++++.+. ...++|++||...+++.+
T Consensus 84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~----------- 152 (255)
T PRK05717 84 RLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEP----------- 152 (255)
T ss_pred CCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCC-----------
Confidence 479999999965321 123355678899999999999999742 235899999987643211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
..+.|+.+|...|.+++.+..+. ..++++.+++|+.+.++........-.........+ ...
T Consensus 153 -----~~~~Y~~sKaa~~~~~~~la~~~-----~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~--------~~~ 214 (255)
T PRK05717 153 -----DTEAYAASKGGLLALTHALAISL-----GPEIRVNAVSPGWIDARDPSQRRAEPLSEADHAQHP--------AGR 214 (255)
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHh-----cCCCEEEEEecccCcCCccccccchHHHHHHhhcCC--------CCC
Confidence 12579999999999998765421 235999999999999975332111111111111111 124
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+.+.+|++.++..++... .....|+.+.+.+|.
T Consensus 215 ~~~~~~va~~~~~l~~~~---------~~~~~g~~~~~~gg~ 247 (255)
T PRK05717 215 VGTVEDVAAMVAWLLSRQ---------AGFVTGQEFVVDGGM 247 (255)
T ss_pred CcCHHHHHHHHHHHcCch---------hcCccCcEEEECCCc
Confidence 678899999998776521 123467788886553
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-20 Score=178.27 Aligned_cols=235 Identities=21% Similarity=0.243 Sum_probs=160.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
.+++|+++||||+|+||++++++|+++|++ |++++|+...... ......++.++++|++|.+++.++++
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 456789999999999999999999999998 9999886432110 01112458899999999999988776
Q ss_pred CcCEEEEcccCCCCc------hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG------KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~------~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++.+. +-.++|++||....++...
T Consensus 94 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~--------- 164 (280)
T PLN02253 94 TLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLG--------- 164 (280)
T ss_pred CCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCC---------
Confidence 689999999964221 123456788999999999999988753 3357999988765333211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH------HHHHHHHHcCCCCeeeC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL------PRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~------~~~i~~~~~g~~~~~~g 221 (478)
...|+.||...|.+++.+..+ + +.+++++.+++|+.+.++...... ...+..... ....
T Consensus 165 -------~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~----~~~~ 229 (280)
T PLN02253 165 -------PHAYTGSKHAVLGLTRSVAAE-L---GKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRA----FAGK 229 (280)
T ss_pred -------CcccHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCcccccccccccccccchhhhhhhhHH----Hhhc
Confidence 146999999999999876532 1 246899999999999876421111 111111100 0000
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHH
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE 276 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e 276 (478)
........++.+|+++++..++.. ......|+.+++.+|...+..+
T Consensus 230 ~~~l~~~~~~~~dva~~~~~l~s~---------~~~~i~G~~i~vdgG~~~~~~~ 275 (280)
T PLN02253 230 NANLKGVELTVDDVANAVLFLASD---------EARYISGLNLMIDGGFTCTNHS 275 (280)
T ss_pred CCCCcCCCCCHHHHHHHHHhhcCc---------ccccccCcEEEECCchhhccch
Confidence 000112347899999999887652 1224568899998776555433
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=196.97 Aligned_cols=234 Identities=24% Similarity=0.255 Sum_probs=167.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+.+++++||||+|+||+++++.|.++|++ |++++|+........ ....++.++.+|++|.+++.++++ +
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~-Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGAC-VVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999998 999998764321100 011368899999999998887765 6
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCC-CeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGI-QRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v-~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
+|+|||+||...... +..+.+..+++|+.|+.++++++.+ .+. .++|++||.+.++++..
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~----------- 567 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPN----------- 567 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCC-----------
Confidence 899999999643321 3345667889999999999887764 343 68999999877433211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCcee-CCCCCCcHHHHHHHHHcCCCCe----eeCCCC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIY-GPGEERHLPRIVSLAKLGLVPF----KIGEPS 224 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vy-Gp~~~~~~~~~i~~~~~g~~~~----~~g~g~ 224 (478)
...|+.||...|.+++.+..+. +..++++++++|+.|| |++.........+....+.... .++++.
T Consensus 568 -----~~~Y~asKaa~~~l~~~la~e~----~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 638 (681)
T PRK08324 568 -----FGAYGAAKAAELHLVRQLALEL----GPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRARN 638 (681)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHh----cccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhcC
Confidence 2579999999999998765321 2468999999999999 6653211111111222232211 345566
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
..+++++++|+|+++..++... .....|++|++.+|...
T Consensus 639 ~l~~~v~~~DvA~a~~~l~s~~---------~~~~tG~~i~vdgG~~~ 677 (681)
T PRK08324 639 LLKREVTPEDVAEAVVFLASGL---------LSKTTGAIITVDGGNAA 677 (681)
T ss_pred CcCCccCHHHHHHHHHHHhCcc---------ccCCcCCEEEECCCchh
Confidence 7788999999999999887411 22457889999988654
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=172.00 Aligned_cols=224 Identities=15% Similarity=0.140 Sum_probs=154.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEE-ecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF-DLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l-~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
|.+++++||||+|+||++++++|.++|++ |+++ +|+...... ......++.++.+|++|++++.++++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYD-IAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999999998 8764 444321100 01123457889999999999888776
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+.....+ +..+....+++|+.++.++++++.+. +.+++|++||...+.+.
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------ 148 (250)
T PRK08063 81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYL------------ 148 (250)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCC------------
Confidence 4799999998643222 12233456789999999999988764 45699999997653211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCcc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
.+ ...|+.+|.+.|.+++.+..+ + ...++++++++|+.+..+..... ...+........ ..
T Consensus 149 ~~----~~~y~~sK~a~~~~~~~~~~~-~---~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 211 (250)
T PRK08063 149 EN----YTTVGVSKAALEALTRYLAVE-L---APKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKT---------PA 211 (250)
T ss_pred CC----ccHHHHHHHHHHHHHHHHHHH-H---hHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCC---------CC
Confidence 01 257999999999999876432 1 13689999999999987753211 112222222111 11
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+++.+|++++++.++... .....|+.+++.+|..
T Consensus 212 ~~~~~~~dva~~~~~~~~~~---------~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 212 GRMVEPEDVANAVLFLCSPE---------ADMIRGQTIIVDGGRS 247 (250)
T ss_pred CCCcCHHHHHHHHHHHcCch---------hcCccCCEEEECCCee
Confidence 24788999999999887631 1235688999887754
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=177.10 Aligned_cols=226 Identities=18% Similarity=0.168 Sum_probs=160.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
..+++|++|||||+|+||++++++|+++|++ |++++|+....... . ....++.++.+|++|.+++.++++
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~-V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGAD-IAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3466789999999999999999999999998 99998875421110 1 112357789999999998887765
Q ss_pred ---CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+..... .+..+....+++|+.++.++++++.+. ...++|++||...+.+...
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~--------- 191 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNET--------- 191 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCC---------
Confidence 579999999964221 122345678899999999999999764 2358999999887432111
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-HHHHHHHHHcCCCCeeeCCCCcc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-LPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
...|+.+|...+.+++.+.... ...|+++++++|+.++.+..... .+....... .....
T Consensus 192 -------~~~Y~~sK~a~~~l~~~la~~~----~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~---------~~~~~ 251 (290)
T PRK06701 192 -------LIDYSATKGAIHAFTRSLAQSL----VQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFG---------SNTPM 251 (290)
T ss_pred -------cchhHHHHHHHHHHHHHHHHHh----hhcCeEEEEEecCCCCCcccccccCHHHHHHHH---------hcCCc
Confidence 1469999999999988775421 13589999999999998753221 112222121 11233
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+.+++|++++++.++... .....|+.+++.+|..
T Consensus 252 ~~~~~~~dva~~~~~ll~~~---------~~~~~G~~i~idgg~~ 287 (290)
T PRK06701 252 QRPGQPEELAPAYVFLASPD---------SSYITGQMLHVNGGVI 287 (290)
T ss_pred CCCcCHHHHHHHHHHHcCcc---------cCCccCcEEEeCCCcc
Confidence 56889999999999887631 2235688898877643
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=172.28 Aligned_cols=229 Identities=19% Similarity=0.191 Sum_probs=153.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhcC----
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAARG---- 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~~---- 78 (478)
+++|+|+||||+|+||+++++.|.++|++ |++++|+.+..... ......+.++.+|++|++++.+++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999998 99998875431100 00123466789999999999887763
Q ss_pred ---cCEEEEcccCCCC-------chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCC
Q 011770 79 ---VDCVFHVASYGMS-------GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 79 ---~D~ViHlAa~~~~-------~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
+|+|||+|+.... ..+.......+++|+.++.++++++. +.+.+++|++||...+++... ...|
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~--~~~~ 158 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKF--EIYE 158 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccc--hhcc
Confidence 7999999974211 11223456677889988877666655 456779999999766433211 1122
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
..+..+ ...|+.||...|.+++....+ + ...++++++++|+.++++... .+........
T Consensus 159 ~~~~~~----~~~Y~~sK~a~~~l~~~la~e-~---~~~~i~v~~i~Pg~~~~~~~~----~~~~~~~~~~--------- 217 (256)
T PRK09186 159 GTSMTS----PVEYAAIKAGIIHLTKYLAKY-F---KDSNIRVNCVSPGGILDNQPE----AFLNAYKKCC--------- 217 (256)
T ss_pred ccccCC----cchhHHHHHHHHHHHHHHHHH-h---CcCCeEEEEEecccccCCCCH----HHHHHHHhcC---------
Confidence 222221 146999999999998655431 1 147899999999999876422 1222222111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+++.+|+|++++.++.. ......|+.+++.+|.
T Consensus 218 ~~~~~~~~~dva~~~~~l~~~---------~~~~~~g~~~~~~~g~ 254 (256)
T PRK09186 218 NGKGMLDPDDICGTLVFLLSD---------QSKYITGQNIIVDDGF 254 (256)
T ss_pred CccCCCCHHHhhhhHhheecc---------ccccccCceEEecCCc
Confidence 112478999999999988762 1223567788877663
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-20 Score=176.36 Aligned_cols=225 Identities=21% Similarity=0.186 Sum_probs=159.6
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCCch
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGK 93 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~ 93 (478)
|+||||||.+|+++++.|++.+++ |+++.|+.++.........+++.+.+|+.|.+++.++++|+|+||.+.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~--- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH--- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC---
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch---
Confidence 799999999999999999999999 9999998754333334557889999999999999999999999998876432
Q ss_pred hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHc
Q 011770 94 EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSN 173 (478)
Q Consensus 94 ~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~ 173 (478)
..-.....+++++|++.||++||+.|....+ ++.....|. .+.-..|...|+.+++
T Consensus 77 ---------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~---------~~~~~~~p~----~~~~~~k~~ie~~l~~-- 132 (233)
T PF05368_consen 77 ---------PSELEQQKNLIDAAKAAGVKHFVPSSFGADY---------DESSGSEPE----IPHFDQKAEIEEYLRE-- 132 (233)
T ss_dssp ---------CCHHHHHHHHHHHHHHHT-SEEEESEESSGT---------TTTTTSTTH----HHHHHHHHHHHHHHHH--
T ss_pred ---------hhhhhhhhhHHHhhhccccceEEEEEecccc---------ccccccccc----chhhhhhhhhhhhhhh--
Confidence 1224556789999999999999975443321 111111221 2344678999998865
Q ss_pred CCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCC-CCeeeCCCCccccce-eHHHHHHHHHHHHhcccCCCC
Q 011770 174 GRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGL-VPFKIGEPSVKTDWI-YVDNLVLALILASMGLLDDIP 251 (478)
Q Consensus 174 ~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~-~~~~~g~g~~~~~~v-~V~Dva~a~~~a~~~l~~~~~ 251 (478)
.+++++++||+..+......+.+ ........ ...++++++....++ +.+|++++...++..
T Consensus 133 ---------~~i~~t~i~~g~f~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~------ 195 (233)
T PF05368_consen 133 ---------SGIPYTIIRPGFFMENLLPPFAP--VVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLD------ 195 (233)
T ss_dssp ---------CTSEBEEEEE-EEHHHHHTTTHH--TTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHS------
T ss_pred ---------ccccceeccccchhhhhhhhhcc--cccccccceEEEEccCCCccccccccHHHHHHHHHHHHcC------
Confidence 37899999999775432111111 00011111 245678888777886 999999999999873
Q ss_pred CCCCCCCC--CCceEEecCCCCCCHHHHHHHHHHhcCCCC
Q 011770 252 GQKGRPIA--SGQPYFVSDGFPINTFEFIGPLLKTLDYDL 289 (478)
Q Consensus 252 ~~~~~~~~--~g~~yni~~g~~~s~~e~~~~i~~~lg~~~ 289 (478)
|.. .|+.+++++ +.+|..|+++.+.+.+|.+.
T Consensus 196 -----p~~~~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v 229 (233)
T PF05368_consen 196 -----PEKHNNGKTIFLAG-ETLTYNEIAAILSKVLGKKV 229 (233)
T ss_dssp -----GGGTTEEEEEEEGG-GEEEHHHHHHHHHHHHTSEE
T ss_pred -----hHHhcCCEEEEeCC-CCCCHHHHHHHHHHHHCCcc
Confidence 222 467777765 88999999999999999763
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=169.96 Aligned_cols=222 Identities=16% Similarity=0.111 Sum_probs=154.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.++|+++||||+|+||++++++|.++|++ |++++++....... ......+.++.+|++|.+++.++++
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFD-VAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999998 98877654321110 0123458889999999998888765
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcC----CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFG----IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~----v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+..... ....+.+..+++|+.|+.++++++.+.. -.++|++||...+ ..
T Consensus 86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~-~~------------ 152 (258)
T PRK09134 86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVW-NL------------ 152 (258)
T ss_pred CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhc-CC------------
Confidence 479999999864321 1234557788999999999999988642 3478888775432 10
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
.|. ...|+.||...|.+.+.+... + ..++++++++|+.++.+.... ...+.. ...+.. .+ .
T Consensus 153 ~p~---~~~Y~~sK~a~~~~~~~la~~-~----~~~i~v~~i~PG~v~t~~~~~-~~~~~~-~~~~~~---~~------~ 213 (258)
T PRK09134 153 NPD---FLSYTLSKAALWTATRTLAQA-L----APRIRVNAIGPGPTLPSGRQS-PEDFAR-QHAATP---LG------R 213 (258)
T ss_pred CCC---chHHHHHHHHHHHHHHHHHHH-h----cCCcEEEEeecccccCCcccC-hHHHHH-HHhcCC---CC------C
Confidence 111 146999999999999876532 1 124999999999987654321 122211 222211 11 2
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
..+++|+|++++.+++. +...|+.|++.+|..+++
T Consensus 214 ~~~~~d~a~~~~~~~~~-----------~~~~g~~~~i~gg~~~~~ 248 (258)
T PRK09134 214 GSTPEEIAAAVRYLLDA-----------PSVTGQMIAVDGGQHLAW 248 (258)
T ss_pred CcCHHHHHHHHHHHhcC-----------CCcCCCEEEECCCeeccc
Confidence 36799999999999872 346788999988876554
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=167.90 Aligned_cols=223 Identities=16% Similarity=0.115 Sum_probs=158.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+++++|+++||||+|+||++++++|.++|++ |++++|+... .....+++++++|++|.++++++++ ++
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~-v~~~~r~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 76 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGAT-VVVCGRRAPE----TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRL 76 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCChhh----hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3467899999999999999999999999998 9999987542 1223468899999999999888775 46
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|+|||+|+..... .+..+.+..+++|+.++.++++++.+. +..++|++||...+.+..
T Consensus 77 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------------- 143 (252)
T PRK07856 77 DVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSP------------- 143 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCC-------------
Confidence 9999999864321 223345678899999999999988752 346899999986532110
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCCcccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
....|+.+|...|.+++....+ + ... +++++++|+.|..+...... +.....+....+ ...
T Consensus 144 ---~~~~Y~~sK~a~~~l~~~la~e-~---~~~-i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---------~~~ 206 (252)
T PRK07856 144 ---GTAAYGAAKAGLLNLTRSLAVE-W---APK-VRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVP---------LGR 206 (252)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHH-h---cCC-eEEEEEEeccccChHHhhhccCHHHHHHHhhcCC---------CCC
Confidence 1257999999999999876542 1 123 99999999999877432111 111122222111 123
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
+...+|+++++..++.. ......|+.+.+.+|...+
T Consensus 207 ~~~p~~va~~~~~L~~~---------~~~~i~G~~i~vdgg~~~~ 242 (252)
T PRK07856 207 LATPADIAWACLFLASD---------LASYVSGANLEVHGGGERP 242 (252)
T ss_pred CcCHHHHHHHHHHHcCc---------ccCCccCCEEEECCCcchH
Confidence 45789999998887652 1224678888888776554
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=167.49 Aligned_cols=224 Identities=17% Similarity=0.168 Sum_probs=153.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
.+++++++||||+|+||++++++|.++|+. |++.+|+.+..... .....+++++.+|++|.++++++++ ++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAI-VGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 356789999999999999999999999997 88887764321111 1113457889999999999887654 58
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+|+..... .+..+.+..+++|+.++.++++++.+ .+.+++|++||...+++.+.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------- 148 (245)
T PRK12936 82 DILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPG------------- 148 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCC-------------
Confidence 9999999964322 12345677889999999999888754 35678999999866443211
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.+|...+.+++....+ + ...++++++++|+.+..+......+.......... ....+..
T Consensus 149 ---~~~Y~~sk~a~~~~~~~la~~-~---~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~---------~~~~~~~ 212 (245)
T PRK12936 149 ---QANYCASKAGMIGFSKSLAQE-I---ATRNVTVNCVAPGFIESAMTGKLNDKQKEAIMGAI---------PMKRMGT 212 (245)
T ss_pred ---CcchHHHHHHHHHHHHHHHHH-h---hHhCeEEEEEEECcCcCchhcccChHHHHHHhcCC---------CCCCCcC
Confidence 146999999888887655321 1 13689999999998866543221111111111111 1223567
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+|+++++..++.. ......|+.+++.+|.
T Consensus 213 ~~~ia~~~~~l~~~---------~~~~~~G~~~~~~~g~ 242 (245)
T PRK12936 213 GAEVASAVAYLASS---------EAAYVTGQTIHVNGGM 242 (245)
T ss_pred HHHHHHHHHHHcCc---------cccCcCCCEEEECCCc
Confidence 89999999877642 1223578899988764
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=171.90 Aligned_cols=224 Identities=17% Similarity=0.192 Sum_probs=156.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-c--cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-H--LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-~--~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++++++++||||+|+||++++++|+++|++ |++++|+++.... . .....++.++++|++|.+++.++++
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467889999999999999999999999998 9999887653200 0 0123468899999999999888775
Q ss_pred CcCEEEEcccCCCCc---hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG---KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~---~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
++|+|||+|+..... ....+....+++|+.++.++.+++.+. +.+++|++||...+++..
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~-------------- 148 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQG-------------- 148 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCC--------------
Confidence 579999999953221 112445677899999999999988642 346899999987643211
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH------HHHHHHHcCCCCeeeCCCCc
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP------RIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~------~~i~~~~~g~~~~~~g~g~~ 225 (478)
....|+.||...|.+++....+ + ...+++++.++|+.|++|.....+. .....+....+ .
T Consensus 149 --~~~~Y~~sK~a~~~~~~~l~~e-~---~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 214 (258)
T PRK08628 149 --GTSGYAAAKGAQLALTREWAVA-L---AKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIP--------L 214 (258)
T ss_pred --CCchhHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCC--------c
Confidence 1257999999999999876431 1 1468999999999999985322111 01111111110 0
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...++..+|++++++.++.. ......|+.+.+.+|
T Consensus 215 ~~~~~~~~dva~~~~~l~~~---------~~~~~~g~~~~~~gg 249 (258)
T PRK08628 215 GHRMTTAEEIADTAVFLLSE---------RSSHTTGQWLFVDGG 249 (258)
T ss_pred cccCCCHHHHHHHHHHHhCh---------hhccccCceEEecCC
Confidence 12467889999999988763 123456788888654
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-19 Score=167.58 Aligned_cols=169 Identities=24% Similarity=0.172 Sum_probs=130.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCV 82 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~V 82 (478)
+++++++++||||+|+||++++++|+++|+ + |++++|+...... ...+++++.+|++|.+++.++++ .+|+|
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~-V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAK-VYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCccc-EEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 345678999999999999999999999999 6 9999987653211 34578899999999999988876 47999
Q ss_pred EEcccC-CCC----chhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 83 FHVASY-GMS----GKEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 83 iHlAa~-~~~----~~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
||+|+. ... .....+....+++|+.++.++++++.+ .+.+++|++||...+.+..
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~---------------- 141 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFP---------------- 141 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCC----------------
Confidence 999997 221 123345567788999999999998764 4567899999977642211
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
....|+.+|..+|.++..+... + ...+++++++||+.+.++.
T Consensus 142 ~~~~y~~sK~a~~~~~~~l~~~-~---~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 142 NLGTYSASKAAAWSLTQALRAE-L---APQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred CchHhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeCCcccccc
Confidence 1257999999999988776431 1 1358999999999997773
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-19 Score=169.00 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=148.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
|++++||||+|+||++++++|+++|++ |+++.++.+..... ......+..+++|++|.++++++++ +
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~ 79 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYT-VAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEP 79 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999998 88754333221110 0112357889999999999988776 4
Q ss_pred cCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHcC-------CCeEEEEeccceeeCCccccCCCCCC
Q 011770 79 VDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEFG-------IQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 79 ~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~~-------v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
+|+|||+|+..... ....+.+..+++|+.++.++++++.+.- ..++|++||...+++.+.
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~-------- 151 (247)
T PRK09730 80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPG-------- 151 (247)
T ss_pred CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCC--------
Confidence 68999999964221 1223455788999999998888776542 246999999866433210
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeCCCCc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
. ...|+.+|...|.+++....+ + ...+++++++||+.+|||.... ..+........+.+..
T Consensus 152 ---~----~~~Y~~sK~~~~~~~~~l~~~-~---~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~------- 213 (247)
T PRK09730 152 ---E----YVDYAASKGAIDTLTTGLSLE-V---AAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQ------- 213 (247)
T ss_pred ---c----ccchHhHHHHHHHHHHHHHHH-H---HHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCCC-------
Confidence 0 135999999999988765421 0 1368999999999999996432 1222222233322211
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+.+|+++++..++.. ......|+.|.+.+|
T Consensus 214 --~~~~~~dva~~~~~~~~~---------~~~~~~g~~~~~~g~ 246 (247)
T PRK09730 214 --RGGQPEEVAQAIVWLLSD---------KASYVTGSFIDLAGG 246 (247)
T ss_pred --CCcCHHHHHHHHHhhcCh---------hhcCccCcEEecCCC
Confidence 123689999999887752 112356778877664
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=168.25 Aligned_cols=226 Identities=16% Similarity=0.202 Sum_probs=159.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-ccccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-HLLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-~~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++++++||||+|+||++++++|.++|++ |++++|+...... .......+.++.+|++|.+++.++++ +
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 89 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR 89 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 3467899999999999999999999999998 9999886542110 01122356789999999998887765 5
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+|+...... ...+....+++|+.|+.++++++.+. +.+++|++||....++...
T Consensus 90 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 157 (255)
T PRK06841 90 IDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALER------------ 157 (255)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCCC------------
Confidence 799999999753221 22345668899999999999998753 5679999999865332211
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-HHHHHHHcCCCCeeeCCCCccccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-RIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
...|+.+|...|.+++....+. +..++++..++|+.+..+....... ........+. ....+
T Consensus 158 ----~~~Y~~sK~a~~~~~~~la~e~----~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~~ 220 (255)
T PRK06841 158 ----HVAYCASKAGVVGMTKVLALEW----GPYGITVNAISPTVVLTELGKKAWAGEKGERAKKLI---------PAGRF 220 (255)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHH----HhhCeEEEEEEeCcCcCcccccccchhHHHHHHhcC---------CCCCC
Confidence 2569999999998887765321 1368999999999998774332111 1111122111 12357
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.+.+|++++++.++.. ......|+.+.+.+|..
T Consensus 221 ~~~~~va~~~~~l~~~---------~~~~~~G~~i~~dgg~~ 253 (255)
T PRK06841 221 AYPEEIAAAALFLASD---------AAAMITGENLVIDGGYT 253 (255)
T ss_pred cCHHHHHHHHHHHcCc---------cccCccCCEEEECCCcc
Confidence 8999999999988763 12245788888877653
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=167.21 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=152.8
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---c--cccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---H--LLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~--~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
|+||||+|+||++++++|.++|++ |++++|+.+.... . ......+.++.+|++|.++++++++ ++|+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAK-VIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI 79 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 589999999999999999999998 9999887532110 0 1112347889999999999888775 4699
Q ss_pred EEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|||+|+..... .+..+....+++|+.++.+++++|.+ .+.+++|++||...+++...
T Consensus 80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~--------------- 144 (239)
T TIGR01830 80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAG--------------- 144 (239)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCC---------------
Confidence 99999964321 22345677889999999999999876 35669999999766544211
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
...|+.+|...|.+++..... + ...+++++++||+.+.++......+............ .-+.+++
T Consensus 145 -~~~y~~~k~a~~~~~~~l~~~-~---~~~g~~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 210 (239)
T TIGR01830 145 -QANYAASKAGVIGFTKSLAKE-L---ASRNITVNAVAPGFIDTDMTDKLSEKVKKKILSQIPL---------GRFGTPE 210 (239)
T ss_pred -CchhHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEEECCCCChhhhhcChHHHHHHHhcCCc---------CCCcCHH
Confidence 256999999999888765431 1 1368999999999987764332222222222222111 2255789
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
|++++++.++.. ......|+.||+++|
T Consensus 211 ~~a~~~~~~~~~---------~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 211 EVANAVAFLASD---------EASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHhCc---------ccCCcCCCEEEeCCC
Confidence 999999887742 122457889999765
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=162.84 Aligned_cols=215 Identities=17% Similarity=0.142 Sum_probs=151.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc------CcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR------GVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~------~~D~Vi 83 (478)
++|+++||||+|+||++++++|.++|++ |++++|+.... ...+++++|++|.+++.++++ ++|+||
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~-v~~~~r~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi 73 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQ-VIGIARSAIDD-------FPGELFACDLADIEQTAATLAQINEIHPVDAIV 73 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCcccc-------cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 3578999999999999999999999998 99999876531 123578999999998887776 689999
Q ss_pred EcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 84 HVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 84 HlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
|+|+...... ...+....+++|+.++.++.+++. +.+.+++|++||... ++... .
T Consensus 74 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~-~~~~~----------------~ 136 (234)
T PRK07577 74 NNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAI-FGALD----------------R 136 (234)
T ss_pred ECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccc-cCCCC----------------c
Confidence 9999754322 233556778899999888876664 456779999999865 32211 2
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---HHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
..|+.+|...|.+++....+ + ...+++++++||+.+..+..... .+..........+ .......
T Consensus 137 ~~Y~~sK~a~~~~~~~~a~e-~---~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 203 (234)
T PRK07577 137 TSYSAAKSALVGCTRTWALE-L---AEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIP---------MRRLGTP 203 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHH-H---HhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCC---------CCCCcCH
Confidence 57999999999998765431 1 14689999999999988753211 0111111111111 1124468
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+|++++++.++.. ......|+.+++.+|..
T Consensus 204 ~~~a~~~~~l~~~---------~~~~~~g~~~~~~g~~~ 233 (234)
T PRK07577 204 EEVAAAIAFLLSD---------DAGFITGQVLGVDGGGS 233 (234)
T ss_pred HHHHHHHHHHhCc---------ccCCccceEEEecCCcc
Confidence 9999999988753 12245688888876643
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=167.03 Aligned_cols=233 Identities=20% Similarity=0.193 Sum_probs=163.3
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--cc--ccCCCeEEEEecCCCHHHHHHHh
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HL--LINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~--~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
|-.+.++.+++++|+||||+|+||++++++|.++|++ |++++|+...... .. ....++.++.+|++|.+++.+++
T Consensus 1 ~~~~~~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~ 79 (255)
T PRK06113 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_pred CCCccccCcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 5556566778899999999999999999999999998 9999876542111 00 11235778899999999887765
Q ss_pred c-------CcCEEEEcccCCCCc---hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCC
Q 011770 77 R-------GVDCVFHVASYGMSG---KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~---~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
+ ++|+|||+|+..... ....+.+..+++|+.++.++++++.. .+..++|++||.....+
T Consensus 80 ~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------- 152 (255)
T PRK06113 80 DFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK------- 152 (255)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCC-------
Confidence 4 579999999964322 12344566789999999999999873 34458999999765211
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-HHHHHHHHHcCCCCeeeC
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-LPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-~~~~i~~~~~g~~~~~~g 221 (478)
..+ ...|+.+|...|.+++..... + ...+++++++.|+.+-.+..... .+..........+
T Consensus 153 -----~~~----~~~Y~~sK~a~~~~~~~la~~-~---~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~----- 214 (255)
T PRK06113 153 -----NIN----MTSYASSKAAASHLVRNMAFD-L---GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP----- 214 (255)
T ss_pred -----CCC----cchhHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEecccccccccccccCHHHHHHHHhcCC-----
Confidence 111 257999999999999876532 1 14689999999999977643321 2223222222211
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
...+...+|+++++..++.. ......|+.+++.+|...
T Consensus 215 ----~~~~~~~~d~a~~~~~l~~~---------~~~~~~G~~i~~~gg~~~ 252 (255)
T PRK06113 215 ----IRRLGQPQDIANAALFLCSP---------AASWVSGQILTVSGGGVQ 252 (255)
T ss_pred ----CCCCcCHHHHHHHHHHHcCc---------cccCccCCEEEECCCccc
Confidence 12356789999999988752 122457899999887543
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=166.93 Aligned_cols=223 Identities=19% Similarity=0.164 Sum_probs=156.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++||||+|+||+++++.|.++|++ |++++|++...... ......+.++.+|++|.+++.++++ +
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDGYR-VIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999998 99998874311110 0123458899999999998887765 4
Q ss_pred cCEEEEcccCCCC----chhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMS----GKEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~----~~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+|+.... .....+.+..+++|+.++.++.+++ ++.+..++|++||...+.+ . +.
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~-~---------~~-- 148 (245)
T PRK12824 81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKG-Q---------FG-- 148 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccC-C---------CC--
Confidence 7999999996432 1233456678899999999885554 5556779999999765321 1 11
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...|+.+|...+.+++.+... + ...++++++++|+.+.++......+..........+ ...+.
T Consensus 149 ----~~~Y~~sK~a~~~~~~~l~~~-~---~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~~ 211 (245)
T PRK12824 149 ----QTNYSAAKAGMIGFTKALASE-G---ARYGITVNCIAPGYIATPMVEQMGPEVLQSIVNQIP---------MKRLG 211 (245)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHH-H---HHhCeEEEEEEEcccCCcchhhcCHHHHHHHHhcCC---------CCCCC
Confidence 146999999999888776431 1 146899999999999887543332333222222221 22355
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
..+|+++++..++.. ......|+.+++.+|.++
T Consensus 212 ~~~~va~~~~~l~~~---------~~~~~~G~~~~~~~g~~~ 244 (245)
T PRK12824 212 TPEEIAAAVAFLVSE---------AAGFITGETISINGGLYM 244 (245)
T ss_pred CHHHHHHHHHHHcCc---------cccCccCcEEEECCCeec
Confidence 689999999877642 122467899999988643
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=166.57 Aligned_cols=223 Identities=18% Similarity=0.190 Sum_probs=154.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--ccCCCeEEEEecCCCHHHHHHHhcC--------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--LINHGVHCIQGDVVSKIDVEKAARG-------- 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~~~~~v~~v~gDl~d~~~l~~~l~~-------- 78 (478)
+++|+++||||+|+||+++++.|.++|++ |++.+++........ ....++.++++|++|.+++.+++++
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 81 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGAR-VVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKP 81 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999999999998 887765433211110 1124688899999999988887752
Q ss_pred cCEEEEcccCCC----------CchhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCC
Q 011770 79 VDCVFHVASYGM----------SGKEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 79 ~D~ViHlAa~~~----------~~~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
+|+|||+|+... ...+..+....+++|+.++.++++++.+ .+..++|++||... .
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~-~---------- 150 (253)
T PRK08642 82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLF-Q---------- 150 (253)
T ss_pred CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccc-c----------
Confidence 899999998521 0112234566789999999999999874 34568999998642 1
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g~g 223 (478)
.+..| .+.|+.||...|.+++.+..+. ...++++..++|+.+-.+.... ..+..........
T Consensus 151 -~~~~~----~~~Y~~sK~a~~~l~~~la~~~----~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~-------- 213 (253)
T PRK08642 151 -NPVVP----YHDYTTAKAALLGLTRNLAAEL----GPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATT-------- 213 (253)
T ss_pred -CCCCC----ccchHHHHHHHHHHHHHHHHHh----CccCeEEEEEeecccCCchhhccCCHHHHHHHHhcC--------
Confidence 01112 2579999999999998875421 2468999999999987653221 1122222222211
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+.+.+|+++++..++.. ......|+.+.+.+|.
T Consensus 214 -~~~~~~~~~~va~~~~~l~~~---------~~~~~~G~~~~vdgg~ 250 (253)
T PRK08642 214 -PLRKVTTPQEFADAVLFFASP---------WARAVTGQNLVVDGGL 250 (253)
T ss_pred -CcCCCCCHHHHHHHHHHHcCc---------hhcCccCCEEEeCCCe
Confidence 113478899999999888752 1235678888887663
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-19 Score=168.02 Aligned_cols=223 Identities=19% Similarity=0.158 Sum_probs=156.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEE-ecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF-DLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l-~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++++++||||+|+||+++++.|+++|++ |+++ +|+....... ......+.++.+|++|.+++.++++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999998 8888 7764421100 0112458899999999999887775
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+..... .+....+..+++|+.++.++++++.. .+.+++|++||...+++...
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~---------- 151 (247)
T PRK05565 82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASC---------- 151 (247)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCCC----------
Confidence 689999999975322 12334567789999999888888765 34567999999876543211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
...|+.+|...+.++...... + ...+++++++||+.+..+......+......... .....
T Consensus 152 ------~~~y~~sK~a~~~~~~~~~~~-~---~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~~---------~~~~~ 212 (247)
T PRK05565 152 ------EVLYSASKGAVNAFTKALAKE-L---APSGIRVNAVAPGAIDTEMWSSFSEEDKEGLAEE---------IPLGR 212 (247)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHH-H---HHcCeEEEEEEECCccCccccccChHHHHHHHhc---------CCCCC
Confidence 146999999988887665432 1 1468999999999997765443322222211111 11234
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+...+|++++++.++... .....|+.+++.++.
T Consensus 213 ~~~~~~va~~~~~l~~~~---------~~~~~g~~~~~~~~~ 245 (247)
T PRK05565 213 LGKPEEIAKVVLFLASDD---------ASYITGQIITVDGGW 245 (247)
T ss_pred CCCHHHHHHHHHHHcCCc---------cCCccCcEEEecCCc
Confidence 568899999998887631 234678888887653
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-19 Score=167.86 Aligned_cols=220 Identities=16% Similarity=0.181 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++++++||||+|+||+++++.|.++|+. |++++|+....... ......+.++++|++|.++++++++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAK-LALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999998 99998875421100 1113457889999999988876655
Q ss_pred CcCEEEEcccCCCCc-------------hhhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccc
Q 011770 78 GVDCVFHVASYGMSG-------------KEMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEI 139 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~-------------~~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~ 139 (478)
++|+|||+|+..... .+..+....+++|+.++.++.+++.+. .-.++|++||... ++..
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~-~~~~-- 158 (253)
T PRK08217 82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIAR-AGNM-- 158 (253)
T ss_pred CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccc-cCCC--
Confidence 479999999853211 122345567789999998887765532 2246899998765 3221
Q ss_pred cCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCee
Q 011770 140 VNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFK 219 (478)
Q Consensus 140 ~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~ 219 (478)
+ ...|+.+|.+.|.+++.+..+ + ...+++++.++|+.+.++......+........+.+
T Consensus 159 ----------~----~~~Y~~sK~a~~~l~~~la~~-~---~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~--- 217 (253)
T PRK08217 159 ----------G----QTNYSASKAGVAAMTVTWAKE-L---ARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMIP--- 217 (253)
T ss_pred ----------C----CchhHHHHHHHHHHHHHHHHH-H---HHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcCC---
Confidence 1 257999999999998876531 1 136899999999999988655444444443333322
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+.+++|+++++..++.. ....|++|++.+|.
T Consensus 218 ------~~~~~~~~~~a~~~~~l~~~-----------~~~~g~~~~~~gg~ 251 (253)
T PRK08217 218 ------VGRLGEPEEIAHTVRFIIEN-----------DYVTGRVLEIDGGL 251 (253)
T ss_pred ------cCCCcCHHHHHHHHHHHHcC-----------CCcCCcEEEeCCCc
Confidence 12466889999999988752 24578999998764
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=169.04 Aligned_cols=205 Identities=20% Similarity=0.184 Sum_probs=146.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+++||||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.+++.++++ ++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQ-LVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999998 99999875421100 0123468889999999999888775 67
Q ss_pred CEEEEcccCCCCch-----hhhchhhhhHhhhHHHHHHHHHHHH---cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK-----EMLQFGRVDEVNINGTCHVIEACLE---FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~~-----~~~~~~~~~~vNv~gt~nll~aa~~---~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+|+...... ..++....+++|+.++.++++.+.+ .+.+++|++||...+.+.. +
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------~- 146 (263)
T PRK06181 80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVP------------T- 146 (263)
T ss_pred CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCC------------C-
Confidence 99999998644321 2223456789999999999999864 2346899999987642211 1
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.+|...|.+++..... + ...++++++++|+.+..+....... ..+... ...+....++++
T Consensus 147 ---~~~Y~~sK~~~~~~~~~l~~~-~---~~~~i~~~~i~pg~v~t~~~~~~~~------~~~~~~--~~~~~~~~~~~~ 211 (263)
T PRK06181 147 ---RSGYAASKHALHGFFDSLRIE-L---ADDGVAVTVVCPGFVATDIRKRALD------GDGKPL--GKSPMQESKIMS 211 (263)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHH-h---hhcCceEEEEecCccccCcchhhcc------cccccc--ccccccccCCCC
Confidence 257999999999998765421 1 1468999999999998764321110 112211 112223347999
Q ss_pred HHHHHHHHHHHHh
Q 011770 232 VDNLVLALILASM 244 (478)
Q Consensus 232 V~Dva~a~~~a~~ 244 (478)
++|+|+++..+++
T Consensus 212 ~~dva~~i~~~~~ 224 (263)
T PRK06181 212 AEECAEAILPAIA 224 (263)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999886
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-18 Score=163.10 Aligned_cols=219 Identities=21% Similarity=0.228 Sum_probs=153.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
.+++|++|||||+|+||++++++|.++|++ |++++|+... ...++++++|++|+++++++++ ++|
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~-Vi~~~r~~~~-------~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id 74 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSN-VINFDIKEPS-------YNDVDYFKVDVSNKEQVIKGIDYVISKYGRID 74 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCccc-------cCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467799999999999999999999999998 9999987542 1258889999999999888775 589
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+|+...... ...+.+..+++|+.|+.++++++.+ .+..++|++||...+.+. .+
T Consensus 75 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~-- 140 (258)
T PRK06398 75 ILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVT------------RN-- 140 (258)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCC------------CC--
Confidence 9999999643221 2334567789999999999888764 345799999998763211 01
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-------HH-HHHHHHcCCCCeeeCCCC
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-------PR-IVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-------~~-~i~~~~~g~~~~~~g~g~ 224 (478)
...|+.||...|.+.+....+ + ..++++.+++|+.+-.+-..... +. ..+.... ++...
T Consensus 141 --~~~Y~~sKaal~~~~~~la~e-~----~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 207 (258)
T PRK06398 141 --AAAYVTSKHAVLGLTRSIAVD-Y----APTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIRE------WGEMH 207 (258)
T ss_pred --CchhhhhHHHHHHHHHHHHHH-h----CCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHh------hhhcC
Confidence 267999999999999876532 1 12499999999988665211100 00 0000000 01111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 208 ~~~~~~~p~eva~~~~~l~s~---------~~~~~~G~~i~~dgg~ 244 (258)
T PRK06398 208 PMKRVGKPEEVAYVVAFLASD---------LASFITGECVTVDGGL 244 (258)
T ss_pred CcCCCcCHHHHHHHHHHHcCc---------ccCCCCCcEEEECCcc
Confidence 223466789999999887652 1224578888877664
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-19 Score=175.44 Aligned_cols=184 Identities=17% Similarity=0.084 Sum_probs=131.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++++++||||+|+||.+++++|+++|++ |++++|+....... . .....++++++|++|.+++.++++
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWH-VIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 356789999999999999999999999998 99998865421110 0 112358899999999999888775
Q ss_pred -CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHc----C--CCeEEEEeccceeeC---CccccCC
Q 011770 78 -GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEF----G--IQRLVYVSTYNVVFG---GKEIVNG 142 (478)
Q Consensus 78 -~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~----~--v~r~V~~SS~~v~~g---~~~~~~~ 142 (478)
++|+|||+||.... ..+..+.+..+++|+.|+.++++++.+. + ..|+|++||...+++ +....+.
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~ 161 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPA 161 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCC
Confidence 38999999996432 1233456778899999999999888753 2 359999999877542 1100010
Q ss_pred --C------------------CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 143 --N------------------ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 143 --~------------------E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
+ +..++.| .++|+.||++.+.+.+.+..+. . ...|++++++||+.|+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y~~SK~a~~~~~~~la~~~-~--~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 162 PADLGDLSGFEAGFKAPISMADGKKFKP----GKAYKDSKLCNMLTMRELHRRY-H--ESTGITFSSLYPGCVADTP 231 (322)
T ss_pred ccchhhhhcchhcccccccccCccCCCc----cchhhHhHHHHHHHHHHHHHhh-c--ccCCeEEEEecCCcccCCc
Confidence 0 1122223 3789999999888777665431 0 1358999999999998754
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=163.78 Aligned_cols=222 Identities=16% Similarity=0.156 Sum_probs=154.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.+++.++++ ++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 81 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGAD-IVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHI 81 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 56799999999999999999999999998 99998865311111 1113458899999999999886664 58
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|+|||+|+...... ...+.+..+++|+.++.++++++.+. + ..++|++||...+.+.. .
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----------~-- 149 (248)
T TIGR01832 82 DILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI----------R-- 149 (248)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCC----------C--
Confidence 99999999753221 22345677899999999999988643 3 45899999987642211 0
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCCcccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
...|+.+|...+.+++....+. ..+++++++++|+.|..+...... ......... . .....
T Consensus 150 ----~~~Y~~sKaa~~~~~~~la~e~----~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~-~--------~~~~~ 212 (248)
T TIGR01832 150 ----VPSYTASKHGVAGLTKLLANEW----AAKGINVNAIAPGYMATNNTQALRADEDRNAAILE-R--------IPAGR 212 (248)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHh----CccCcEEEEEEECcCcCcchhccccChHHHHHHHh-c--------CCCCC
Confidence 1469999999999987775421 146899999999999887532211 011111111 1 11246
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
++..+|+|++++.++.. ......|+.+.+.+|
T Consensus 213 ~~~~~dva~~~~~l~s~---------~~~~~~G~~i~~dgg 244 (248)
T TIGR01832 213 WGTPDDIGGPAVFLASS---------ASDYVNGYTLAVDGG 244 (248)
T ss_pred CcCHHHHHHHHHHHcCc---------cccCcCCcEEEeCCC
Confidence 88999999999888752 122345766666544
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-19 Score=175.49 Aligned_cols=221 Identities=17% Similarity=0.096 Sum_probs=144.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
.+++++|+||||+|+||++++++|+++|++ |++++|+............++.++++|++|.++++++++ ++|
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 456789999999999999999999999998 999998754221111111347899999999999887764 589
Q ss_pred EEEEcccCCCCch--hhhchhhhhHhhhHHHHHHHHH----HHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 81 CVFHVASYGMSGK--EMLQFGRVDEVNINGTCHVIEA----CLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 81 ~ViHlAa~~~~~~--~~~~~~~~~~vNv~gt~nll~a----a~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
+|||+||...... .....+..+++|+.|+.++.++ +++.+..++|++||.....+.......++..++.+
T Consensus 102 ~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~---- 177 (315)
T PRK06196 102 ILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGYDK---- 177 (315)
T ss_pred EEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCCCh----
Confidence 9999999643221 1233466788999997666554 44555569999999764322211111111122222
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHH-HH--HHHHcCCCCeeeCCCCcccccee
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPR-IV--SLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~-~i--~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||.+.+.+.+..... + ...|++++++||+.+.++........ .. ..+.....+ + ...+..
T Consensus 178 ~~~Y~~SK~a~~~~~~~la~~-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~ 246 (315)
T PRK06196 178 WLAYGQSKTANALFAVHLDKL-G---KDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNP-I------DPGFKT 246 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-h---cCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhh-h------hhhcCC
Confidence 267999999999988766432 1 14689999999999999864321110 00 011100000 0 002456
Q ss_pred HHHHHHHHHHHHh
Q 011770 232 VDNLVLALILASM 244 (478)
Q Consensus 232 V~Dva~a~~~a~~ 244 (478)
.+|.|.+++.++.
T Consensus 247 ~~~~a~~~~~l~~ 259 (315)
T PRK06196 247 PAQGAATQVWAAT 259 (315)
T ss_pred HhHHHHHHHHHhc
Confidence 7899999998875
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=166.27 Aligned_cols=222 Identities=14% Similarity=0.104 Sum_probs=154.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++++++||||+|+||.+++++|+++|++ |++++|+....... . ....++.++++|++|.+++.++++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGAD-VLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999998 99999875421100 0 113468889999999999887665
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH-----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE-----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~-----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+..... ....+....+++|+.++.++.+++.+ .+..++|++||.....+.
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----------- 154 (263)
T PRK07814 86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAG----------- 154 (263)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCC-----------
Confidence 679999999864322 12345677889999999999999975 345689999996542211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
.+ ...|+.||...|.+++....+. ..+++++.++|+.+..+..... -..+...+.... .
T Consensus 155 -~~----~~~Y~~sK~a~~~~~~~~~~e~-----~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~ 215 (263)
T PRK07814 155 -RG----FAAYGTAKAALAHYTRLAALDL-----CPRIRVNAIAPGSILTSALEVVAANDELRAPMEKAT---------P 215 (263)
T ss_pred -CC----CchhHHHHHHHHHHHHHHHHHH-----CCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcC---------C
Confidence 11 2579999999999998765421 2358999999999876532110 012222222111 1
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.......+|++++++.++... .....|+.+.+.++
T Consensus 216 ~~~~~~~~~va~~~~~l~~~~---------~~~~~g~~~~~~~~ 250 (263)
T PRK07814 216 LRRLGDPEDIAAAAVYLASPA---------GSYLTGKTLEVDGG 250 (263)
T ss_pred CCCCcCHHHHHHHHHHHcCcc---------ccCcCCCEEEECCC
Confidence 123457899999999887521 12356777777654
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-18 Score=162.94 Aligned_cols=222 Identities=18% Similarity=0.152 Sum_probs=153.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.++++++||||+|+||++++++|.++|++ |+++.++.+..... .....++.++++|++|.++++++++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999998 88877654321110 1123458899999999999888876
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
++|+|||+|+..... ....+.+..+++|+.++.++++++.+. ...++|++||.....+. |
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~-------------~ 148 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPL-------------P 148 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCC-------------C
Confidence 589999999964321 123345677889999999999998765 23489999987642111 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC-CCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE-ERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~-~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
..+.|+.+|...|.+++....+ + ...++++++++|+.+-.+.. ....+.....+....+. .-+
T Consensus 149 ---~~~~Y~~sK~a~~~~~~~~a~~-~---~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---------~~~ 212 (245)
T PRK12937 149 ---GYGPYAASKAAVEGLVHVLANE-L---RGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLAPL---------ERL 212 (245)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcCCC---------CCC
Confidence 1267999999999999776431 1 13689999999998876642 11122233333332221 124
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.+++|+++++..++.. ......|+.+++.+|
T Consensus 213 ~~~~d~a~~~~~l~~~---------~~~~~~g~~~~~~~g 243 (245)
T PRK12937 213 GTPEEIAAAVAFLAGP---------DGAWVNGQVLRVNGG 243 (245)
T ss_pred CCHHHHHHHHHHHcCc---------cccCccccEEEeCCC
Confidence 4679999998887752 122456888888654
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-18 Score=167.40 Aligned_cols=223 Identities=14% Similarity=0.116 Sum_probs=155.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----c--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----L--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++++++||||+|+||++++++|+++|++ |++.+++....... . .....+.++.+|++|.+++.++++
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~-Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGAD-VAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56689999999999999999999999998 99887653321100 0 112347789999999988877654
Q ss_pred --CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 --GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 --~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+|+.... ..+..+....+++|+.|+.++++++.+. .-.++|++||...+.+..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~----------- 194 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSP----------- 194 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCC-----------
Confidence 57999999986321 1234566788999999999999999764 125899999987642211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
....|+.||...+.+++....+ + ..+|+++.+++|+.|++|.... ........+.... ..
T Consensus 195 -----~~~~Y~asKaal~~l~~~la~e-l---~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 256 (294)
T PRK07985 195 -----HLLDYAATKAAILNYSRGLAKQ-V---AEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQT---------PM 256 (294)
T ss_pred -----CcchhHHHHHHHHHHHHHHHHH-H---hHhCcEEEEEECCcCccccccccCCCHHHHHHHhccC---------CC
Confidence 0256999999999988776532 1 1368999999999999985321 1112222222211 11
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 257 ~r~~~pedva~~~~fL~s~---------~~~~itG~~i~vdgG~ 291 (294)
T PRK07985 257 KRAGQPAELAPVYVYLASQ---------ESSYVTAEVHGVCGGE 291 (294)
T ss_pred CCCCCHHHHHHHHHhhhCh---------hcCCccccEEeeCCCe
Confidence 2355689999999887752 1234568888887764
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=165.62 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=146.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+.+++++++||||+|+||++++++|+++|++ |++++|++...... .....++.++.+|++|.+++.++++
T Consensus 3 ~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 3 QSLQGKNALITGAGRGIGRAVAIALAKEGVN-VGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred ccCCCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999998 99999875421110 1112358889999999999888776
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+...... ...+....+++|+.++.++++++.. .+.+++|++||...+++..
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~---------- 151 (239)
T PRK07666 82 LGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAA---------- 151 (239)
T ss_pred cCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCC----------
Confidence 6899999998643221 2234567789999999999988864 4567899999987643321
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
+ ...|+.+|...+.+++.+..+ + ...+++++++||+.+.++..... ... .++ ..
T Consensus 152 --~----~~~Y~~sK~a~~~~~~~~a~e-~---~~~gi~v~~v~pg~v~t~~~~~~------~~~-------~~~---~~ 205 (239)
T PRK07666 152 --V----TSAYSASKFGVLGLTESLMQE-V---RKHNIRVTALTPSTVATDMAVDL------GLT-------DGN---PD 205 (239)
T ss_pred --C----CcchHHHHHHHHHHHHHHHHH-h---hccCcEEEEEecCcccCcchhhc------ccc-------ccC---CC
Confidence 1 256999999999888765431 1 14689999999999988743210 000 111 12
Q ss_pred cceeHHHHHHHHHHHHh
Q 011770 228 DWIYVDNLVLALILASM 244 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~ 244 (478)
.++..+|+|++++.+++
T Consensus 206 ~~~~~~~~a~~~~~~l~ 222 (239)
T PRK07666 206 KVMQPEDLAEFIVAQLK 222 (239)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 45778999999999887
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=163.63 Aligned_cols=215 Identities=17% Similarity=0.117 Sum_probs=150.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++|+||||+|+||++++++|+++|++ |++++|++....... ....+++++++|++|.+++.++++ +
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 55789999999999999999999999998 999998754221110 111568899999999998887775 6
Q ss_pred cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
+|+|||+|+..... ....+....+++|+.++.++++++.+. +.+++|++||...+.+ ..+
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~~- 149 (237)
T PRK07326 83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNF------------FAG- 149 (237)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccC------------CCC-
Confidence 89999999864332 123344577899999999999988753 4568999999764211 111
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.+|+..+.+++.+... + ...+++++++||+.+.++....... ......+.
T Consensus 150 ---~~~y~~sk~a~~~~~~~~~~~-~---~~~gi~v~~v~pg~~~t~~~~~~~~------------------~~~~~~~~ 204 (237)
T PRK07326 150 ---GAAYNASKFGLVGFSEAAMLD-L---RQYGIKVSTIMPGSVATHFNGHTPS------------------EKDAWKIQ 204 (237)
T ss_pred ---CchHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEeeccccCcccccccc------------------hhhhccCC
Confidence 256999999999888765321 1 1468999999999997764221000 00001367
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+|++++++.++.. .+........+.+++|.
T Consensus 205 ~~d~a~~~~~~l~~----------~~~~~~~~~~~~~~~~~ 235 (237)
T PRK07326 205 PEDIAQLVLDLLKM----------PPRTLPSKIEVRPSRPP 235 (237)
T ss_pred HHHHHHHHHHHHhC----------CccccccceEEecCCCC
Confidence 89999999998873 33344555566555554
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=161.30 Aligned_cols=223 Identities=17% Similarity=0.200 Sum_probs=151.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~ViH 84 (478)
.+++|+|+||||+|+||++++++|.++|++ |++.+++............+++++.+|++|.+++.+.++ ++|++||
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~ 81 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVV 81 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEE
Confidence 466789999999999999999999999998 988766543221111122246788999999998887765 4899999
Q ss_pred cccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCch
Q 011770 85 VASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSY 158 (478)
Q Consensus 85 lAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y 158 (478)
+|+..... .+..+.+..+++|+.++.+++..+.+. ...++|++||.... ..|..+ ...|
T Consensus 82 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~-----------~~~~~~----~~~Y 146 (237)
T PRK12742 82 NAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD-----------RMPVAG----MAAY 146 (237)
T ss_pred CCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc-----------cCCCCC----Ccch
Confidence 99864321 123456788899999999998777664 23589999996531 011111 2679
Q ss_pred HhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 159 GRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 159 ~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
+.+|...|.+++....+ + ...++++++++|+.+..+......+ .........+ ...+...+|++++
T Consensus 147 ~~sKaa~~~~~~~la~~-~---~~~gi~v~~v~Pg~~~t~~~~~~~~-~~~~~~~~~~---------~~~~~~p~~~a~~ 212 (237)
T PRK12742 147 AASKSALQGMARGLARD-F---GPRGITINVVQPGPIDTDANPANGP-MKDMMHSFMA---------IKRHGRPEEVAGM 212 (237)
T ss_pred HHhHHHHHHHHHHHHHH-H---hhhCeEEEEEecCcccCCccccccH-HHHHHHhcCC---------CCCCCCHHHHHHH
Confidence 99999999999766432 1 1468999999999998775332111 1111211111 1234678999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
+..++... .....|+.+.+.+|
T Consensus 213 ~~~l~s~~---------~~~~~G~~~~~dgg 234 (237)
T PRK12742 213 VAWLAGPE---------ASFVTGAMHTIDGA 234 (237)
T ss_pred HHHHcCcc---------cCcccCCEEEeCCC
Confidence 98877521 22356777777554
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-18 Score=163.53 Aligned_cols=223 Identities=17% Similarity=0.143 Sum_probs=151.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
+++|+++||||+|+||++++++|.++|++ |++++++..... ......++.++.+|++|++++.++++ ++|+
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~-~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAK-VAVLYNSAENEA-KELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDV 82 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCcHHHH-HHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 56789999999999999999999999998 988876543221 11122357899999999999888765 5799
Q ss_pred EEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHH----HHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIE----ACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~----aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|||+|+..... ....+.+..+++|+.|+..+.+ .+++.+..++|++||...+.... +
T Consensus 83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~------------~--- 147 (255)
T PRK06463 83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAA------------E--- 147 (255)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCC------------C---
Confidence 99999864321 1234556788999999655544 44445567999999987631110 0
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
....|+.||.+.+.+++....+ + ...++++++++|+.+-.+-... ..+.......... ....
T Consensus 148 ~~~~Y~asKaa~~~~~~~la~e-~---~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 214 (255)
T PRK06463 148 GTTFYAITKAGIIILTRRLAFE-L---GKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKT---------VLKT 214 (255)
T ss_pred CccHhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCC---------CcCC
Confidence 1256999999999999876532 1 1468999999999885542110 1111222222211 1234
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+...+|++++++.++.. ......|+.+.+.+|.
T Consensus 215 ~~~~~~va~~~~~l~s~---------~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 215 TGKPEDIANIVLFLASD---------DARYITGQVIVADGGR 247 (255)
T ss_pred CcCHHHHHHHHHHHcCh---------hhcCCCCCEEEECCCe
Confidence 56789999999988752 1224568888887665
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=169.68 Aligned_cols=167 Identities=21% Similarity=0.188 Sum_probs=126.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--------CcCE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--------GVDC 81 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--------~~D~ 81 (478)
++++|+||||+|+||++++++|.++|++ |++++|++... ......+++++.+|++|.++++++++ ++|+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~-Vi~~~r~~~~~--~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~ 79 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWR-VFATCRKEEDV--AALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDA 79 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHH--HHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence 3578999999999999999999999998 99999875422 11223468899999999988877664 4699
Q ss_pred EEEcccCCCCch----hhhchhhhhHhhhHH----HHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSGK----EMLQFGRVDEVNING----TCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~~----~~~~~~~~~~vNv~g----t~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|||+|+....+. +..+.+..+++|+.| +.++++.+++.+..++|++||...+.+ ..
T Consensus 80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~------------~~---- 143 (277)
T PRK05993 80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVP------------MK---- 143 (277)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCC------------CC----
Confidence 999998754332 223456678999999 667777788888889999999754211 11
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
....|+.||...|.+++....+ + ...|+++++++|+.+-.+-
T Consensus 144 ~~~~Y~asK~a~~~~~~~l~~e-l---~~~gi~v~~v~Pg~v~T~~ 185 (277)
T PRK05993 144 YRGAYNASKFAIEGLSLTLRME-L---QGSGIHVSLIEPGPIETRF 185 (277)
T ss_pred ccchHHHHHHHHHHHHHHHHHH-h---hhhCCEEEEEecCCccCch
Confidence 1267999999999998765421 1 1478999999999997663
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=166.13 Aligned_cols=226 Identities=19% Similarity=0.239 Sum_probs=150.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
.+++++|+||||+|+||++++++|.++|++ |++++|+...... .....+..++++|++|.++++++++ ++|
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~-v~~~~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 81 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGAT-VVVGDIDPEAGKA-AADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVD 81 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHH-HHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 366899999999999999999999999998 9999987542111 1111123678999999999888776 579
Q ss_pred EEEEcccCCCCc------hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 81 CVFHVASYGMSG------KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 81 ~ViHlAa~~~~~------~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|||+|+..... .+....+..+++|+.|+.++++.+. +.+..++|++||....++...
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~------------ 149 (255)
T PRK06057 82 IAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSAT------------ 149 (255)
T ss_pred EEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCCC------------
Confidence 999999864321 1223456788899999988887765 345568999999654333210
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
....|+.+|+..+.++.....+ + ...+++++++||+.+.+|........-.....+... ... ...+.
T Consensus 150 ---~~~~Y~~sKaal~~~~~~l~~~-~---~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~--~~~----~~~~~ 216 (255)
T PRK06057 150 ---SQISYTASKGGVLAMSRELGVQ-F---ARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLV--HVP----MGRFA 216 (255)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHH-H---HhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHh--cCC----CCCCc
Confidence 0256999998877776643221 0 135899999999999988643221100011111000 001 12578
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
+++|+++++..++.. ......|+.+.+.+|
T Consensus 217 ~~~~~a~~~~~l~~~---------~~~~~~g~~~~~~~g 246 (255)
T PRK06057 217 EPEEIAAAVAFLASD---------DASFITASTFLVDGG 246 (255)
T ss_pred CHHHHHHHHHHHhCc---------cccCccCcEEEECCC
Confidence 899999998876642 122456777777654
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-18 Score=161.60 Aligned_cols=221 Identities=16% Similarity=0.152 Sum_probs=150.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++|+++||||+|+||++++++|.++|++ |++..++....... . .....+..+.+|++|.+++.++++
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFK-VVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG 80 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999998 88764432211100 0 112346778999999998887764
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+|+..... .+..+.+..+++|+.++.++.+++ ++.+..++|++||.....+..
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------ 148 (246)
T PRK12938 81 EIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQF------------ 148 (246)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCC------------
Confidence 589999999964321 133456778899999977766554 455677999999975422111
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
....|+.+|...|.+++.+..+ + ...++++.+++|+.+.+|......+.....+....+ ...+
T Consensus 149 ----~~~~y~~sK~a~~~~~~~l~~~-~---~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~ 211 (246)
T PRK12938 149 ----GQTNYSTAKAGIHGFTMSLAQE-V---ATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIP---------VRRL 211 (246)
T ss_pred ----CChhHHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEEecccCCchhhhcChHHHHHHHhcCC---------ccCC
Confidence 1257999999998887665432 1 146899999999999888544333333333333221 1234
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+|+++++..++.. ......|+.+.+.+|
T Consensus 212 ~~~~~v~~~~~~l~~~---------~~~~~~g~~~~~~~g 242 (246)
T PRK12938 212 GSPDEIGSIVAWLASE---------ESGFSTGADFSLNGG 242 (246)
T ss_pred cCHHHHHHHHHHHcCc---------ccCCccCcEEEECCc
Confidence 5689999999877652 122457888888665
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=153.98 Aligned_cols=302 Identities=16% Similarity=0.138 Sum_probs=211.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHl 85 (478)
.+..+||||||-|.+|..++..|..+ |-+.|+.-|..+++. ...+.-.++..|+.|...+++++- .+|.+||.
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~----~V~~~GPyIy~DILD~K~L~eIVVn~RIdWL~Hf 117 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPA----NVTDVGPYIYLDILDQKSLEEIVVNKRIDWLVHF 117 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCch----hhcccCCchhhhhhccccHHHhhcccccceeeeH
Confidence 34579999999999999999988765 766688888776632 222334567799999999999774 68999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
.|.-. ...+.+-....++|+.|..|+++.+++++. ++...||+++ ||.....+-+ |-.....+++.||.||.-|
T Consensus 118 SALLS-AvGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGA-FGPtSPRNPT---PdltIQRPRTIYGVSKVHA 191 (366)
T KOG2774|consen 118 SALLS-AVGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGA-FGPTSPRNPT---PDLTIQRPRTIYGVSKVHA 191 (366)
T ss_pred HHHHH-HhcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccc-cCCCCCCCCC---CCeeeecCceeechhHHHH
Confidence 87421 122334556778999999999999999997 7777899888 6654332221 2222344679999999999
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC---C--C-cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHH
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE---E--R-HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLAL 239 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~---~--~-~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~ 239 (478)
|.+-..++. ..|+++-++|.+.+..... . . ....+-....+|+.- .+-.++.+..+.|..|+-+++
T Consensus 192 EL~GEy~~h-------rFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~t-Cylrpdtrlpmmy~~dc~~~~ 263 (366)
T KOG2774|consen 192 ELLGEYFNH-------RFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHT-CYLRPDTRLPMMYDTDCMASV 263 (366)
T ss_pred HHHHHHHHh-------hcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcc-cccCCCccCceeehHHHHHHH
Confidence 987765543 5899999999998886422 1 1 334455666777754 445678899999999999999
Q ss_pred HHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccc
Q 011770 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNR 319 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~ 319 (478)
+..+.+. +.....++||+. +-..+-.|++..+.+.+. .+.+.+
T Consensus 264 ~~~~~a~---------~~~lkrr~ynvt-~~sftpee~~~~~~~~~p----~~~i~y----------------------- 306 (366)
T KOG2774|consen 264 IQLLAAD---------SQSLKRRTYNVT-GFSFTPEEIADAIRRVMP----GFEIDY----------------------- 306 (366)
T ss_pred HHHHhCC---------HHHhhhheeeec-eeccCHHHHHHHHHhhCC----Cceeec-----------------------
Confidence 8887642 224566799998 477888999888877642 211111
Q ss_pred ccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHH
Q 011770 320 WWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQD 371 (478)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~ 371 (478)
+|- ++ ....-.....+|.+.++++.-|+-++++-.-+.-++.-.+.
T Consensus 307 ----~~~-sr-q~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~~~~~ 352 (366)
T KOG2774|consen 307 ----DIC-TR-QSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVAVHKS 352 (366)
T ss_pred ----ccc-hh-hhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHHHHHh
Confidence 000 00 11111234468999999999999888777766666655443
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=168.81 Aligned_cols=166 Identities=22% Similarity=0.229 Sum_probs=129.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDCV 82 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~V 82 (478)
++++|+||||+|+||++++++|.++|++ |++++|+... .....+++++++|++|.++++++++ ++|+|
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~----~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~l 77 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYR-VFGTSRNPAR----AAPIPGVELLELDVTDDASVQAAVDEVIARAGRIDVL 77 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCChhh----ccccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence 3578999999999999999999999999 9999987552 2234578899999999999988876 36999
Q ss_pred EEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 83 FHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 83 iHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
||+||....+. +..+.+..+++|+.|+.++++++ ++.+.+++|++||...+.+. | .
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-------------~---~ 141 (270)
T PRK06179 78 VNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPA-------------P---Y 141 (270)
T ss_pred EECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCC-------------C---C
Confidence 99999753321 23345778899999999999885 55678899999997653211 1 1
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE 200 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~ 200 (478)
...|+.||...|.++.....+ + ...|+++++++|+.+.++..
T Consensus 142 ~~~Y~~sK~a~~~~~~~l~~e-l---~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 142 MALYAASKHAVEGYSESLDHE-V---RQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-H---hhhCcEEEEEeCCCcccccc
Confidence 257999999999988765421 1 14799999999999988753
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-18 Score=163.79 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=160.3
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHh
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
|..-.+.++++|+++||||+|+||++++++|.++|++ |++++|++...... .....++.++.+|++|.+++.+++
T Consensus 1 ~~~~~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 1 MSILQRFSLAGQVALVTGSARGLGFEIARALAGAGAH-VLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCcccccCCCCCEEEEECCCchHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 4444456678899999999999999999999999998 99999875421110 011345889999999999888776
Q ss_pred c-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccC
Q 011770 77 R-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~ 141 (478)
+ .+|+|||+|+..... ....+.+..+++|+.++.++.+++.+ .+.+++|++||.....+...
T Consensus 80 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~--- 156 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAG--- 156 (256)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCCC---
Confidence 5 469999999964322 12334567789999999999977764 56679999999765322110
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCee
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFK 219 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~ 219 (478)
...|+.+|...+.+++....+ + ...++++.+++|+.+.++..... .+.+........
T Consensus 157 -------------~~~Y~~sK~a~~~~~~~la~e-~---~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---- 215 (256)
T PRK06124 157 -------------DAVYPAAKQGLTGLMRALAAE-F---GPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRT---- 215 (256)
T ss_pred -------------ccHhHHHHHHHHHHHHHHHHH-H---HHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcC----
Confidence 157999999999988765432 1 13589999999999999863321 112222222211
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
....+++.+|++++++.++... .....|+.+.+.+|
T Consensus 216 -----~~~~~~~~~~~a~~~~~l~~~~---------~~~~~G~~i~~dgg 251 (256)
T PRK06124 216 -----PLGRWGRPEEIAGAAVFLASPA---------ASYVNGHVLAVDGG 251 (256)
T ss_pred -----CCCCCCCHHHHHHHHHHHcCcc---------cCCcCCCEEEECCC
Confidence 1124789999999999987631 11345777666554
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=165.36 Aligned_cols=194 Identities=19% Similarity=0.141 Sum_probs=141.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc-cCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL-INHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~-~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
+|+|+||||+|+||++++++|.++|++ |++++|+....... .. ...++.++++|++|.+++.++++ .+|
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGAT-LGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999998 99999875421110 00 11168899999999999888765 379
Q ss_pred EEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHH----HHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIE----ACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 81 ~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~----aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
++||+|+..... ....+....+++|+.|+.++++ ++++.+..++|++||...+++.+ .
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~-------------~ 147 (257)
T PRK07024 81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLP-------------G 147 (257)
T ss_pred EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCC-------------C
Confidence 999999964321 1224567788999999999777 45556667999999987643311 0
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||...|.++.....+ + ...+++++++||+.+.++.... ... . .-.++.
T Consensus 148 ---~~~Y~asK~a~~~~~~~l~~e-~---~~~gi~v~~v~Pg~v~t~~~~~----------~~~-----~----~~~~~~ 201 (257)
T PRK07024 148 ---AGAYSASKAAAIKYLESLRVE-L---RPAGVRVVTIAPGYIRTPMTAH----------NPY-----P----MPFLMD 201 (257)
T ss_pred ---CcchHHHHHHHHHHHHHHHHH-h---hccCcEEEEEecCCCcCchhhc----------CCC-----C----CCCccC
Confidence 256999999999998765421 1 1478999999999998874211 000 0 011357
Q ss_pred HHHHHHHHHHHHh
Q 011770 232 VDNLVLALILASM 244 (478)
Q Consensus 232 V~Dva~a~~~a~~ 244 (478)
.+|+++.++.++.
T Consensus 202 ~~~~a~~~~~~l~ 214 (257)
T PRK07024 202 ADRFAARAARAIA 214 (257)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998886
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=158.66 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=154.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCH-HHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK-IDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~-~~l~~~l~~~D~ViHlAa 87 (478)
+++|+++||||+|+||++++++|.++|++ |++++|+.... ...++.++.+|++|+ +.+.+.+.++|+|||+|+
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag 76 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQ-VYGVDKQDKPD-----LSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAG 76 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCE-EEEEeCCcccc-----cCCcEEEEECChHHHHHHHHHhhCCCCEEEECCC
Confidence 56789999999999999999999999998 99998875421 234688899999997 555555567999999998
Q ss_pred CCC-----CchhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCch
Q 011770 88 YGM-----SGKEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSY 158 (478)
Q Consensus 88 ~~~-----~~~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y 158 (478)
... ......+.+..+++|+.++.++++++.. .+..++|++||...+.+.. ....|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------------~~~~Y 140 (235)
T PRK06550 77 ILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGG----------------GGAAY 140 (235)
T ss_pred CCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCC----------------CCccc
Confidence 531 1123345677889999999999998864 3345899999987643211 02569
Q ss_pred HhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCCccccceeHHHHH
Q 011770 159 GRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLV 236 (478)
Q Consensus 159 ~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva 236 (478)
+.+|...|.+++....+. ...++++++++|+.+.++...... ..+...+.... ....+...+|++
T Consensus 141 ~~sK~a~~~~~~~la~~~----~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a 207 (235)
T PRK06550 141 TASKHALAGFTKQLALDY----AKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARET---------PIKRWAEPEEVA 207 (235)
T ss_pred HHHHHHHHHHHHHHHHHh----hhcCeEEEEEeeCCccCcccccccCchHHHHHHhccC---------CcCCCCCHHHHH
Confidence 999999998887654321 146899999999999888543211 12222222222 123466789999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 237 LALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 237 ~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
++++.++... .....|+.+.+.+|.
T Consensus 208 ~~~~~l~s~~---------~~~~~g~~~~~~gg~ 232 (235)
T PRK06550 208 ELTLFLASGK---------ADYMQGTIVPIDGGW 232 (235)
T ss_pred HHHHHHcChh---------hccCCCcEEEECCce
Confidence 9999887521 224567788776653
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=167.14 Aligned_cols=203 Identities=22% Similarity=0.158 Sum_probs=141.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--------CcCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--------GVDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--------~~D~V 82 (478)
+++|+||||+|+||+++++.|.++|++ |++++|+..... .....+++++++|++|.+++.++++ ++|.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~-v~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~i 78 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYR-VLAACRKPDDVA--RMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGL 78 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHhH--HHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEE
Confidence 368999999999999999999999998 999988754221 1122357889999999988766553 46899
Q ss_pred EEcccCCCCch----hhhchhhhhHhhhHHHHHH----HHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 83 FHVASYGMSGK----EMLQFGRVDEVNINGTCHV----IEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 83 iHlAa~~~~~~----~~~~~~~~~~vNv~gt~nl----l~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
||+|+...... +..+.+..+++|+.|+.++ ++.+++.+.+++|++||...+.+. + .
T Consensus 79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~-------------~---~ 142 (256)
T PRK08017 79 FNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLIST-------------P---G 142 (256)
T ss_pred EECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCC-------------C---C
Confidence 99998643221 2334567889999998875 666677788899999997442111 0 1
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCC-CCeeeCCCCccccceeHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGL-VPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~-~~~~~g~g~~~~~~v~V~ 233 (478)
.++|+.||...|.+.+..... + ...+++++++||+.+..+... .+..+. .......+...+.+++++
T Consensus 143 ~~~Y~~sK~~~~~~~~~l~~~-~---~~~~i~v~~v~pg~~~t~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (256)
T PRK08017 143 RGAYAASKYALEAWSDALRME-L---RHSGIKVSLIEPGPIRTRFTD--------NVNQTQSDKPVENPGIAARFTLGPE 210 (256)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-H---hhcCCEEEEEeCCCcccchhh--------cccchhhccchhhhHHHhhcCCCHH
Confidence 257999999999987643210 1 146899999999877544211 111111 111122233446789999
Q ss_pred HHHHHHHHHHh
Q 011770 234 NLVLALILASM 244 (478)
Q Consensus 234 Dva~a~~~a~~ 244 (478)
|+++++..+++
T Consensus 211 d~a~~~~~~~~ 221 (256)
T PRK08017 211 AVVPKLRHALE 221 (256)
T ss_pred HHHHHHHHHHh
Confidence 99999999987
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-18 Score=161.91 Aligned_cols=228 Identities=20% Similarity=0.243 Sum_probs=156.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
+.++++++++||||+|+||++++++|.++|++ |++++|+.+..... . ....++.++++|++|+++++++++
T Consensus 3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~ 81 (254)
T PRK06114 3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGAD-VALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTE 81 (254)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999998 99999875422111 0 113457889999999998887765
Q ss_pred ----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+|+...... ...+.+..+++|+.++..+++++. +.+..++|++||.+.+.+...
T Consensus 82 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------- 154 (254)
T PRK06114 82 AELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRG------- 154 (254)
T ss_pred HHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCC-------
Confidence 3699999999643221 234567788999999988777664 345568999999765322111
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeCCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
.+ ...|+.+|+..+.+++....+ + ...|+++.+++|+.+.++.... ........+....+
T Consensus 155 ---~~----~~~Y~~sKaa~~~l~~~la~e-~---~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~p-------- 215 (254)
T PRK06114 155 ---LL----QAHYNASKAGVIHLSKSLAME-W---VGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQTP-------- 215 (254)
T ss_pred ---CC----cchHHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEeecCccCcccccccchHHHHHHHhcCC--------
Confidence 00 156999999999988776532 1 1468999999999998875332 11111122222111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|++++++.++.. ......|+++.+.+|.
T Consensus 216 -~~r~~~~~dva~~~~~l~s~---------~~~~~tG~~i~~dgg~ 251 (254)
T PRK06114 216 -MQRMAKVDEMVGPAVFLLSD---------AASFCTGVDLLVDGGF 251 (254)
T ss_pred -CCCCcCHHHHHHHHHHHcCc---------cccCcCCceEEECcCE
Confidence 11245689999999887652 1235678888877653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-18 Score=162.38 Aligned_cols=225 Identities=17% Similarity=0.174 Sum_probs=157.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++.++++|||||+|+||++++++|+++|++ |++.+|+....... . .....+..+.+|++|.+++.++++
T Consensus 5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~~-vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 5 FSLAGKNILITGSAQGIGFLLATGLAEYGAE-IIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3467889999999999999999999999998 99998875421110 1 112357788999999998887764
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+..... ....+.+..+++|+.++.++++++.+ .+..++|++||.....+..
T Consensus 84 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 153 (254)
T PRK08085 84 IGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRD---------- 153 (254)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCC----------
Confidence 479999999964321 12345667889999999998888765 3456899999975422111
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
....|+.+|...|.+++.+..+ + ...|+++.+++|+.+..+..... .+.+...+....+
T Consensus 154 ------~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p--------- 214 (254)
T PRK08085 154 ------TITPYAASKGAVKMLTRGMCVE-L---ARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTP--------- 214 (254)
T ss_pred ------CCcchHHHHHHHHHHHHHHHHH-H---HhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCC---------
Confidence 1257999999999999877532 1 14689999999999998854321 1222222222211
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|+++++..++.. ......|+...+.+|.
T Consensus 215 ~~~~~~~~~va~~~~~l~~~---------~~~~i~G~~i~~dgg~ 250 (254)
T PRK08085 215 AARWGDPQELIGAAVFLSSK---------ASDFVNGHLLFVDGGM 250 (254)
T ss_pred CCCCcCHHHHHHHHHHHhCc---------cccCCcCCEEEECCCe
Confidence 23466789999998877752 1234567777766553
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=164.22 Aligned_cols=227 Identities=19% Similarity=0.180 Sum_probs=151.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+|+++||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|++++.++++ ++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFK-VAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 579999999999999999999999998 99999875421111 0 112457889999999998877665 57
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|+|||+|+...... ...+.+..+++|+.++.++++++.+. + -.++|++||...+++...
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 148 (256)
T PRK08643 81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPE------------ 148 (256)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCC------------
Confidence 99999998643221 22345677889999998888877653 2 258999999876433211
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCe-----eeCCCCc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPF-----KIGEPSV 225 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~-----~~g~g~~ 225 (478)
...|+.+|...|.+++....+ + ...|+++++++|+.+.+|.........-. ..+.... .... ..
T Consensus 149 ----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~ 217 (256)
T PRK08643 149 ----LAVYSSTKFAVRGLTQTAARD-L---ASEGITVNAYAPGIVKTPMMFDIAHQVGE--NAGKPDEWGMEQFAKD-IT 217 (256)
T ss_pred ----CchhHHHHHHHHHHHHHHHHH-h---cccCcEEEEEeeCCCcChhhhHHHhhhcc--ccCCCchHHHHHHhcc-CC
Confidence 257999999999888766532 1 14689999999999988742211100000 0000000 0000 01
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 218 ~~~~~~~~~va~~~~~L~~~---------~~~~~~G~~i~vdgg~ 253 (256)
T PRK08643 218 LGRLSEPEDVANCVSFLAGP---------DSDYITGQTIIVDGGM 253 (256)
T ss_pred CCCCcCHHHHHHHHHHHhCc---------cccCccCcEEEeCCCe
Confidence 12356789999998887752 1234678888886653
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-18 Score=163.34 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=153.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++||||+|+||++++++|+++|++ |+++++++...... . .....+.++.+|++|.++++++++ .
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999998 98887654422111 0 123458899999999998877665 4
Q ss_pred cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcC-----CCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFG-----IQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~-----v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
+|+|||+|+..... ....+....+++|+.++.++++++.+.- -.++|++||..... +..
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~~~ 148 (256)
T PRK12743 81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT------------PLP 148 (256)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC------------CCC
Confidence 79999999964322 1234567788999999999999887642 24899999965311 111
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
+ ...|+.+|...+.+++....+ + ...+++++.++|+.++++......+........+.+. ..+
T Consensus 149 ~----~~~Y~~sK~a~~~l~~~la~~-~---~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~~ 211 (256)
T PRK12743 149 G----ASAYTAAKHALGGLTKAMALE-L---VEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIPL---------GRP 211 (256)
T ss_pred C----cchhHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEEeCCccCccccccChHHHHHHHhcCCC---------CCC
Confidence 1 257999999999998766432 1 1468999999999999885332111111112211111 124
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.+.+|++.++..++.. ......|+.+.+.+|..
T Consensus 212 ~~~~dva~~~~~l~~~---------~~~~~~G~~~~~dgg~~ 244 (256)
T PRK12743 212 GDTHEIASLVAWLCSE---------GASYTTGQSLIVDGGFM 244 (256)
T ss_pred CCHHHHHHHHHHHhCc---------cccCcCCcEEEECCCcc
Confidence 5789999999887752 12245688888877654
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=166.24 Aligned_cols=213 Identities=17% Similarity=0.166 Sum_probs=140.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-CcCEEEEc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-GVDCVFHV 85 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-~~D~ViHl 85 (478)
+++||||||+|+||++++++|+++|++ |++++|+.+..... .....++.++++|++|.+++.+++. ++|+|||+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 468999999999999999999999998 99998865421100 0112358899999999999999887 89999999
Q ss_pred ccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCc
Q 011770 86 ASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS 157 (478)
Q Consensus 86 Aa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~ 157 (478)
|+...... +....+..+++|+.++.++.+.+ ++.+.+++|++||...+.+. |. ...
T Consensus 81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~-------------~~---~~~ 144 (257)
T PRK09291 81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITG-------------PF---TGA 144 (257)
T ss_pred CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCC-------------CC---cch
Confidence 99653322 22334567889999887766544 45667899999997643221 11 257
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
|+.||...|.++...... + ...|++++++||+.+.-+........+..............++....+++..+|+++
T Consensus 145 Y~~sK~a~~~~~~~l~~~-~---~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
T PRK09291 145 YCASKHALEAIAEAMHAE-L---KPFGIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDPEDLAFPLEQFDPQEMID 220 (257)
T ss_pred hHHHHHHHHHHHHHHHHH-H---HhcCcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhhhhhhccccCCCHHHHHH
Confidence 999999999988665321 1 136899999999877433211111111110000000000111122335678899988
Q ss_pred HHHHHHh
Q 011770 238 ALILASM 244 (478)
Q Consensus 238 a~~~a~~ 244 (478)
.++.++.
T Consensus 221 ~~~~~l~ 227 (257)
T PRK09291 221 AMVEVIP 227 (257)
T ss_pred HHHHHhc
Confidence 8887764
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=162.85 Aligned_cols=226 Identities=18% Similarity=0.162 Sum_probs=153.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
++.+++++++||||+|+||++++++|.++|++ |++++|+....... . ....++.++++|++|.+++.++++
T Consensus 5 ~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 5 LFSLKGKVAVITGGGGVLGGAMAKELARAGAK-VAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred eeccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998 99999875421110 0 112357889999999998877664
Q ss_pred ---CcCEEEEcccCCCCc-------------------hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccc
Q 011770 78 ---GVDCVFHVASYGMSG-------------------KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYN 131 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~-------------------~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~ 131 (478)
++|+|||+|+..... ....+....+++|+.++..+++++. +.+..++|++||..
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~ 163 (278)
T PRK08277 84 DFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMN 163 (278)
T ss_pred HcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccch
Confidence 689999999954321 1133456778999999987666554 34556899999987
Q ss_pred eeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-------
Q 011770 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL------- 204 (478)
Q Consensus 132 v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~------- 204 (478)
.+.+ ..+ ...|+.||...|.+++.+..+ + ...++++.+++|+.|.++......
T Consensus 164 ~~~~------------~~~----~~~Y~~sK~a~~~l~~~la~e-~---~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~ 223 (278)
T PRK08277 164 AFTP------------LTK----VPAYSAAKAAISNFTQWLAVH-F---AKVGIRVNAIAPGFFLTEQNRALLFNEDGSL 223 (278)
T ss_pred hcCC------------CCC----CchhHHHHHHHHHHHHHHHHH-h---CccCeEEEEEEeccCcCcchhhhhccccccc
Confidence 6321 111 256999999999998776542 1 246899999999999988532211
Q ss_pred HHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 205 PRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 205 ~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
......+.... ....+...+|++++++.++.... .....|+...+.+|
T Consensus 224 ~~~~~~~~~~~---------p~~r~~~~~dva~~~~~l~s~~~--------~~~~tG~~i~vdgG 271 (278)
T PRK08277 224 TERANKILAHT---------PMGRFGKPEELLGTLLWLADEKA--------SSFVTGVVLPVDGG 271 (278)
T ss_pred hhHHHHHhccC---------CccCCCCHHHHHHHHHHHcCccc--------cCCcCCCEEEECCC
Confidence 01111111111 12335668999999988765100 12456788877665
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=160.36 Aligned_cols=228 Identities=24% Similarity=0.245 Sum_probs=170.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
++|||||||||+|++++++|+++|++ |+++.|++...... . .+++++.+|+.+..++..+++|+|.++++.+...
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~-v~~~~r~~~~~~~~--~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~~- 75 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHE-VRAAVRNPEAAAAL--A-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLLD- 75 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCE-EEEEEeCHHHHHhh--c-CCcEEEEeccCCHhHHHHHhccccEEEEEecccc-
Confidence 47999999999999999999999999 99999887643222 2 7899999999999999999999999999998543
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~ 171 (478)
+.. ...........+..+++. .+++++++.|...+- +. . ...|..+|..+|+.+.+
T Consensus 76 ~~~-----~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~----------~~---~-----~~~~~~~~~~~e~~l~~ 131 (275)
T COG0702 76 GSD-----AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGAD----------AA---S-----PSALARAKAAVEAALRS 131 (275)
T ss_pred ccc-----chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCC----------CC---C-----ccHHHHHHHHHHHHHHh
Confidence 211 122333444444444444 457889998886541 10 0 16799999999999975
Q ss_pred HcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCC
Q 011770 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251 (478)
Q Consensus 172 ~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~ 251 (478)
.|++.+++|+..+|....... .......+.+....+.+ ..+++.++|++.++..++.
T Consensus 132 -----------sg~~~t~lr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~i~~~d~a~~~~~~l~------- 188 (275)
T COG0702 132 -----------SGIPYTTLRRAAFYLGAGAAF---IEAAEAAGLPVIPRGIG--RLSPIAVDDVAEALAAALD------- 188 (275)
T ss_pred -----------cCCCeEEEecCeeeeccchhH---HHHHHhhCCceecCCCC--ceeeeEHHHHHHHHHHHhc-------
Confidence 578889999877777654432 22334444444333443 7899999999999998876
Q ss_pred CCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCC
Q 011770 252 GQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLA 295 (478)
Q Consensus 252 ~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp 295 (478)
.+...+++|.+++++..+..|..+.+.+..|.+......|
T Consensus 189 ----~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~~~~~ 228 (275)
T COG0702 189 ----APATAGRTYELAGPEALTLAELASGLDYTIGRPVGLIPEA 228 (275)
T ss_pred ----CCcccCcEEEccCCceecHHHHHHHHHHHhCCcceeeCCc
Confidence 3346788999999999999999999999999886654433
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-18 Score=162.33 Aligned_cols=203 Identities=15% Similarity=0.163 Sum_probs=140.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~Vi 83 (478)
|+|+||||+|+||.+++++|+++|++ |++++|++...... .....+++++.+|++|.+++.++++ ++|+||
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi 79 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLV 79 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 57999999999999999999999998 99999875421110 1113468889999999998877664 689999
Q ss_pred EcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 84 HVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 84 HlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
|+||.... ..+..+.+..+++|+.|+.++++++ ++.+.+++|++||.....+ ..+
T Consensus 80 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------~~~---- 143 (248)
T PRK10538 80 NNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP------------YAG---- 143 (248)
T ss_pred ECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCC------------CCC----
Confidence 99986421 1133455678899999966665555 4566779999999765211 111
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-HHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-LPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
.+.|+.+|...|.+.+....+ + ...++++++++|+.+.|+..... +..-.... ... + ....++..+
T Consensus 144 ~~~Y~~sK~~~~~~~~~l~~~-~---~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~--~~~---~----~~~~~~~~~ 210 (248)
T PRK10538 144 GNVYGATKAFVRQFSLNLRTD-L---HGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA--EKT---Y----QNTVALTPE 210 (248)
T ss_pred CchhHHHHHHHHHHHHHHHHH-h---cCCCcEEEEEeCCeecccccchhhccCcHHHH--Hhh---c----cccCCCCHH
Confidence 257999999999998776432 1 24689999999999987743210 00000000 000 0 012356899
Q ss_pred HHHHHHHHHHh
Q 011770 234 NLVLALILASM 244 (478)
Q Consensus 234 Dva~a~~~a~~ 244 (478)
|+|++++.++.
T Consensus 211 dvA~~~~~l~~ 221 (248)
T PRK10538 211 DVSEAVWWVAT 221 (248)
T ss_pred HHHHHHHHHhc
Confidence 99999988875
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=163.57 Aligned_cols=223 Identities=18% Similarity=0.157 Sum_probs=150.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++|+++||||+|+||++++++|.+.|++ |++.+++....... ......+..+.+|++|.+++..+++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999998 88875433221110 0112346778999999877654332
Q ss_pred ------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+||...... ...+.+..+++|+.++..+++++.+.- ..++|++||...+.+.
T Consensus 82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--------- 152 (252)
T PRK12747 82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL--------- 152 (252)
T ss_pred hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC---------
Confidence 5899999999643221 223456778899999999999887642 3489999998763211
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-HHHHHHHcCCCCeeeCCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-RIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-~~i~~~~~g~~~~~~g~g~ 224 (478)
| ....|+.||+..+.+++....+. ...|+++.++.|+.|.++......+ .......... .
T Consensus 153 ----~---~~~~Y~~sKaa~~~~~~~la~e~----~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~--------~ 213 (252)
T PRK12747 153 ----P---DFIAYSMTKGAINTMTFTLAKQL----GARGITVNAILPGFIKTDMNAELLSDPMMKQYATTI--------S 213 (252)
T ss_pred ----C---CchhHHHHHHHHHHHHHHHHHHH----hHcCCEEEEEecCCccCchhhhcccCHHHHHHHHhc--------C
Confidence 0 12579999999999998764321 2468999999999998885322111 0111111100 1
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+.+.+|+++++..++.. ......|+.+.+.+|.
T Consensus 214 ~~~~~~~~~dva~~~~~l~s~---------~~~~~~G~~i~vdgg~ 250 (252)
T PRK12747 214 AFNRLGEVEDIADTAAFLASP---------DSRWVTGQLIDVSGGS 250 (252)
T ss_pred cccCCCCHHHHHHHHHHHcCc---------cccCcCCcEEEecCCc
Confidence 123477899999999887652 1224568888887653
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=159.45 Aligned_cols=224 Identities=16% Similarity=0.105 Sum_probs=153.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--cc--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HL--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+.+++++++||||+|+||.+++++|.++|++ |++++|+...... .. .....+.++++|++|.++++++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAH-VIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999998 9999986542111 00 112347789999999998877665
Q ss_pred --CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 --GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 --~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+|+.... ..+..+.+..+++|+.++.++++++. +.+..++|++||...+.+.
T Consensus 83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 152 (252)
T PRK07035 83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPG---------- 152 (252)
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCC----------
Confidence 47999999985321 12333456788999999998887774 4456799999997542211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~ 224 (478)
.+ .+.|+.||...|.+++.+..+. ...|++++.+.|+.+-.+...... ...........+
T Consensus 153 --~~----~~~Y~~sK~al~~~~~~l~~e~----~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~-------- 214 (252)
T PRK07035 153 --DF----QGIYSITKAAVISMTKAFAKEC----APFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIP-------- 214 (252)
T ss_pred --CC----CcchHHHHHHHHHHHHHHHHHH----hhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCC--------
Confidence 11 2579999999999998775321 246899999999998765322111 112222222111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+...+|+++++..++.. ......|+.+++.+|
T Consensus 215 -~~~~~~~~~va~~~~~l~~~---------~~~~~~g~~~~~dgg 249 (252)
T PRK07035 215 -LRRHAEPSEMAGAVLYLASD---------ASSYTTGECLNVDGG 249 (252)
T ss_pred -CCCcCCHHHHHHHHHHHhCc---------cccCccCCEEEeCCC
Confidence 12355678999999887753 122457778877654
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=161.55 Aligned_cols=226 Identities=17% Similarity=0.156 Sum_probs=155.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc----cCCCeEEEEecCCCHHHHHHHhc----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL----INHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~----~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+.+..... .. ....+.++++|++|++++.++++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999998 99999865421110 01 13457889999999998888775
Q ss_pred ---CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+|+..... .+..+.+..+++|+.++.++++++.+ .+..++|++||...+.+.
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 152 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKII---------- 152 (260)
T ss_pred HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCC----------
Confidence 589999999964322 12345677889999999999988764 345689999997652111
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-----HH-HHHHHHcCCCCeee
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-----PR-IVSLAKLGLVPFKI 220 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-----~~-~i~~~~~g~~~~~~ 220 (478)
| ...+|+.||...+.+++....+ + ...|+++..++|+.+-.+...... +. .........+
T Consensus 153 ---~---~~~~Y~~sKaa~~~~~~~la~e-l---~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---- 218 (260)
T PRK07063 153 ---P---GCFPYPVAKHGLLGLTRALGIE-Y---AARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQP---- 218 (260)
T ss_pred ---C---CchHHHHHHHHHHHHHHHHHHH-h---CccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCC----
Confidence 1 1256999999999999776532 2 246899999999998665322110 00 1111111111
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
...+...+|++.+++.++.. ......|+...+.+|...
T Consensus 219 -----~~r~~~~~~va~~~~fl~s~---------~~~~itG~~i~vdgg~~~ 256 (260)
T PRK07063 219 -----MKRIGRPEEVAMTAVFLASD---------EAPFINATCITIDGGRSV 256 (260)
T ss_pred -----CCCCCCHHHHHHHHHHHcCc---------cccccCCcEEEECCCeee
Confidence 11245689999999887652 123467888888766543
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=160.12 Aligned_cols=228 Identities=17% Similarity=0.192 Sum_probs=152.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--------cccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--------LLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--------~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
+++++++||||+|+||.++++.|+++|++ |++++++....... ......++++++|++|.++++++++
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~-vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAK-AVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCc-EEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 56789999999999999999999999998 88887654321100 0112367889999999999887765
Q ss_pred ----CcCEEEEcccCCCC----chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 ----GVDCVFHVASYGMS----GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~----~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+|+.... ..+..+.+..+++|+.++.++++++.+.- ..++++++|+.+ ....
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~-~~~~---------- 153 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLL-GAFT---------- 153 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchh-cccC----------
Confidence 57999999996322 12334567788999999999999987641 246776644332 1100
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
|. ...|+.||.+.|.+++.+..+ + ...++++++++|+.+.++.... ..+... ..... ...+.+...
T Consensus 154 --~~---~~~Y~~sK~a~~~~~~~la~e-~---~~~~i~v~~v~pg~v~t~~~~~~~~~~~~---~~~~~-~~~~~~~~~ 220 (257)
T PRK12744 154 --PF---YSAYAGSKAPVEHFTRAASKE-F---GARGISVTAVGPGPMDTPFFYPQEGAEAV---AYHKT-AAALSPFSK 220 (257)
T ss_pred --CC---cccchhhHHHHHHHHHHHHHH-h---CcCceEEEEEecCccccchhccccccchh---hcccc-ccccccccc
Confidence 11 257999999999999877542 1 1358999999999998764321 001100 00000 001111122
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+.+.+|+++++..+++. .....|+++++.+|..
T Consensus 221 ~~~~~~~dva~~~~~l~~~----------~~~~~g~~~~~~gg~~ 255 (257)
T PRK12744 221 TGLTDIEDIVPFIRFLVTD----------GWWITGQTILINGGYT 255 (257)
T ss_pred CCCCCHHHHHHHHHHhhcc----------cceeecceEeecCCcc
Confidence 3578999999999998862 1134688999887643
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=161.49 Aligned_cols=225 Identities=16% Similarity=0.166 Sum_probs=156.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++|+|+||||+|+||++++++|.++|++.|++++|+....... . .....+.++.+|++|++++.++++
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999987588888764321100 0 112357789999999998887765
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcC-----CCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFG-----IQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~-----v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+..... .........+++|+.++.++++++.+.. ..++|++||...+.+..
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~---------- 152 (260)
T PRK06198 83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQP---------- 152 (260)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCC----------
Confidence 579999999964321 1223446678999999999998886532 34799999987642211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-------HHHHHHHHHcCCCCeee
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-------LPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-------~~~~i~~~~~g~~~~~~ 220 (478)
....|+.+|...|.+++....+. ...+++++.++|+.++++..... ...+.......
T Consensus 153 ------~~~~Y~~sK~a~~~~~~~~a~e~----~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~------ 216 (260)
T PRK06198 153 ------FLAAYCASKGALATLTRNAAYAL----LRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAAT------ 216 (260)
T ss_pred ------CcchhHHHHHHHHHHHHHHHHHh----cccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhcc------
Confidence 02579999999999988654321 14679999999999999864211 11122222111
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.....+++.+|+++++..++... .....|+.+++.++.
T Consensus 217 ---~~~~~~~~~~~~a~~~~~l~~~~---------~~~~~G~~~~~~~~~ 254 (260)
T PRK06198 217 ---QPFGRLLDPDEVARAVAFLLSDE---------SGLMTGSVIDFDQSV 254 (260)
T ss_pred ---CCccCCcCHHHHHHHHHHHcChh---------hCCccCceEeECCcc
Confidence 11234678999999999877521 124578888887654
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=160.32 Aligned_cols=224 Identities=21% Similarity=0.191 Sum_probs=155.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c--cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H--LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~--~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++++++||||+|+||++++++|.++|++ |++++|+...... . .....++.++++|++|.+++.++++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAK-VVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 366799999999999999999999999998 9999987542111 0 1113458899999999998888765
Q ss_pred -CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+..... .+..+....+++|+.++.++++++. +.+..++|++||...+.+..
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~---------- 152 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAP---------- 152 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCC----------
Confidence 469999999964221 1334566778899999987776554 34556899999987642211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---HHHHHHHHHcCCCCeeeCCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~~~~i~~~~~g~~~~~~g~g~ 224 (478)
....|+.+|...|.+++....+. ...++++.++.|+.|-.+..... .+..........
T Consensus 153 ------~~~~Y~~sKaa~~~~~~~la~e~----~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~--------- 213 (253)
T PRK06172 153 ------KMSIYAASKHAVIGLTKSAAIEY----AKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMH--------- 213 (253)
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHh----cccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccC---------
Confidence 12579999999999987765421 14689999999999966643221 111111121111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+...+|+++.+..++... .....|+.+++.+|.
T Consensus 214 ~~~~~~~p~~ia~~~~~l~~~~---------~~~~~G~~i~~dgg~ 250 (253)
T PRK06172 214 PVGRIGKVEEVASAVLYLCSDG---------ASFTTGHALMVDGGA 250 (253)
T ss_pred CCCCccCHHHHHHHHHHHhCcc---------ccCcCCcEEEECCCc
Confidence 1123557899999998887521 224678888887764
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-18 Score=164.03 Aligned_cols=197 Identities=17% Similarity=0.081 Sum_probs=139.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
+++++++||||||.||++++++|.++|++ |++.+|++............++++.+|++|++++.++++ ++|+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDV 81 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45689999999999999999999999998 999988654211111111257889999999998766654 5799
Q ss_pred EEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
+||+||...... +..+....+++|+.|+.++.+++. +.+..++|++||...+.+. |
T Consensus 82 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------~--- 145 (273)
T PRK07825 82 LVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPV-------------P--- 145 (273)
T ss_pred EEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCC-------------C---
Confidence 999999643321 223456678999999888777765 4566799999998653211 1
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
....|+.||...+.+......+ + ...|+++++++|+.+-.+... +.. +.....++..+
T Consensus 146 ~~~~Y~asKaa~~~~~~~l~~e-l---~~~gi~v~~v~Pg~v~t~~~~------------~~~------~~~~~~~~~~~ 203 (273)
T PRK07825 146 GMATYCASKHAVVGFTDAARLE-L---RGTGVHVSVVLPSFVNTELIA------------GTG------GAKGFKNVEPE 203 (273)
T ss_pred CCcchHHHHHHHHHHHHHHHHH-h---hccCcEEEEEeCCcCcchhhc------------ccc------cccCCCCCCHH
Confidence 1257999999888776554321 1 146899999999988544211 100 01123478999
Q ss_pred HHHHHHHHHHh
Q 011770 234 NLVLALILASM 244 (478)
Q Consensus 234 Dva~a~~~a~~ 244 (478)
|+|++++.++.
T Consensus 204 ~va~~~~~~l~ 214 (273)
T PRK07825 204 DVAAAIVGTVA 214 (273)
T ss_pred HHHHHHHHHHh
Confidence 99999999887
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=159.27 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=152.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++++++||||+|.||.+++++|.++|++ |++++|+++..... . ....++.++.+|++|.++++++++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAK-VVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 466789999999999999999999999998 99999875432110 0 112357889999999998887775
Q ss_pred -CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+|+.... ..+..+.+..+++|+.++.++.+++. +.+..++|++||...+..+.
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~---------- 151 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAGF---------- 151 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccCC----------
Confidence 58999999996421 11234467788999988877766544 45566899999976521000
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
| ....|+.||.+.+.+++....+ + +..|+++.+++|+.+-.+..... .+.....+.... .
T Consensus 152 --~---~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~ 213 (254)
T PRK07478 152 --P---GMAAYAASKAGLIGLTQVLAAE-Y---GAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLH---------A 213 (254)
T ss_pred --C---CcchhHHHHHHHHHHHHHHHHH-H---hhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcC---------C
Confidence 1 1257999999999998876532 1 14689999999999977632211 111111111111 1
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|++++++.++.. ......|+++.+.+|.
T Consensus 214 ~~~~~~~~~va~~~~~l~s~---------~~~~~~G~~~~~dgg~ 249 (254)
T PRK07478 214 LKRMAQPEEIAQAALFLASD---------AASFVTGTALLVDGGV 249 (254)
T ss_pred CCCCcCHHHHHHHHHHHcCc---------hhcCCCCCeEEeCCch
Confidence 12355789999999887752 1224568888776553
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=159.78 Aligned_cols=224 Identities=20% Similarity=0.209 Sum_probs=155.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc-ccc--ccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW-SHL--LINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~-~~~--~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
.+++++||||||+|+||.+++++|++.|++ |++++|+..... ... .....+.++++|++|.+++.++++
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999998 999988732111 001 113458899999999999888776
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|++||+|+..... ....+.+..+++|+.++.++.+++.+ .+..++|++||...+.+...
T Consensus 91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 159 (258)
T PRK06935 91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKF----------- 159 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCCC-----------
Confidence 579999999964321 12345667889999998888877654 45679999999876422110
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCCccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
...|+.+|.+.|.+++.+..+. +..|+++++++|+.+..+...... +.....+.... ...
T Consensus 160 -----~~~Y~asK~a~~~~~~~la~e~----~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 221 (258)
T PRK06935 160 -----VPAYTASKHGVAGLTKAFANEL----AAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRI---------PAG 221 (258)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHh----hhhCeEEEEEEeccccccchhhcccChHHHHHHHhcC---------CCC
Confidence 2469999999999998775421 246899999999999877432110 11111111111 113
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+...+|++.++..++.. ......|+++.+.+|.
T Consensus 222 ~~~~~~dva~~~~~l~s~---------~~~~~~G~~i~~dgg~ 255 (258)
T PRK06935 222 RWGEPDDLMGAAVFLASR---------ASDYVNGHILAVDGGW 255 (258)
T ss_pred CCCCHHHHHHHHHHHcCh---------hhcCCCCCEEEECCCe
Confidence 466779999999877652 1234678888877663
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=161.35 Aligned_cols=225 Identities=17% Similarity=0.201 Sum_probs=154.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++++++||||+|.||++++++|+++|++ |++++|+....... .....++.++++|++|.+++.++++ .+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGAR-VAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 466789999999999999999999999998 99999875421111 1113458899999999998887765 57
Q ss_pred CEEEEcccCCCC---chhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 80 DCVFHVASYGMS---GKEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 80 D~ViHlAa~~~~---~~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|++||+|+.... ..+..+....+++|+.++.++++++.+. +-.++|++||.+..++...
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~--------------- 146 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQTG--------------- 146 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCC---------------
Confidence 999999986322 1233456778899999999999987652 3358999999876432211
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH---HHHHHHHHcCCCCeeeCCCCccccce
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL---PRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~---~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...|+.+|...+.+++....+ + ...++++++++|+.+..+...... ......+... . .....+.
T Consensus 147 -~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~--~------~p~~r~~ 213 (261)
T PRK08265 147 -RWLYPASKAAIRQLTRSMAMD-L---APDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP--F------HLLGRVG 213 (261)
T ss_pred -CchhHHHHHHHHHHHHHHHHH-h---cccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc--c------CCCCCcc
Confidence 256999999999988766432 1 146899999999988766321100 0000111100 0 0112345
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..+|+++++..++.. ......|+.+.+.+|.
T Consensus 214 ~p~dva~~~~~l~s~---------~~~~~tG~~i~vdgg~ 244 (261)
T PRK08265 214 DPEEVAQVVAFLCSD---------AASFVTGADYAVDGGY 244 (261)
T ss_pred CHHHHHHHHHHHcCc---------cccCccCcEEEECCCe
Confidence 689999999988752 1234678888887764
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=159.73 Aligned_cols=194 Identities=18% Similarity=0.139 Sum_probs=141.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC----cCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG----VDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~----~D~ViHlA 86 (478)
|++++||||+|+||++++++|+++|++ |++++|++...........++.++++|++|.+++++++++ +|.+||+|
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~a 79 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQ-VIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNA 79 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcC
Confidence 468999999999999999999999998 9999987542111111224588999999999999998874 58999999
Q ss_pred cCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHh
Q 011770 87 SYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGR 160 (478)
Q Consensus 87 a~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~ 160 (478)
+..... ....+.+..+++|+.|+.++++++... +-+++|++||....++. | ....|+.
T Consensus 80 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~-------------~---~~~~Y~a 143 (240)
T PRK06101 80 GDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELAL-------------P---RAEAYGA 143 (240)
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCC-------------C---CCchhhH
Confidence 853211 122334568899999999999999864 23579999986542221 1 1257999
Q ss_pred hHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHH
Q 011770 161 SKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240 (478)
Q Consensus 161 sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~ 240 (478)
||...|.+.+.+..+ + ...|++++++||+.+++|..... . . .. ...+..+|+++.++
T Consensus 144 sK~a~~~~~~~l~~e-~---~~~gi~v~~v~pg~i~t~~~~~~-----------~-~---~~----~~~~~~~~~a~~i~ 200 (240)
T PRK06101 144 SKAAVAYFARTLQLD-L---RPKGIEVVTVFPGFVATPLTDKN-----------T-F---AM----PMIITVEQASQEIR 200 (240)
T ss_pred HHHHHHHHHHHHHHH-H---HhcCceEEEEeCCcCCCCCcCCC-----------C-C---CC----CcccCHHHHHHHHH
Confidence 999999998765421 1 14689999999999998853310 0 0 00 11367899999999
Q ss_pred HHHh
Q 011770 241 LASM 244 (478)
Q Consensus 241 ~a~~ 244 (478)
.+++
T Consensus 201 ~~i~ 204 (240)
T PRK06101 201 AQLA 204 (240)
T ss_pred HHHh
Confidence 9887
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=158.54 Aligned_cols=219 Identities=13% Similarity=0.055 Sum_probs=148.8
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCc--------c-c----c--cccCCCeEEEEecCCCHHH
Q 011770 9 IEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSP--------W-S----H--LLINHGVHCIQGDVVSKID 71 (478)
Q Consensus 9 ~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~--------~-~----~--~~~~~~v~~v~gDl~d~~~ 71 (478)
+++++|+||||+| .||.+++++|.++|++ |++++|++.+. . . . ......++++.+|++|.++
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGID-IFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYA 81 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCc-EEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 5678999999996 6999999999999998 99998873211 0 0 0 0112358899999999998
Q ss_pred HHHHhc-------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCC
Q 011770 72 VEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGG 136 (478)
Q Consensus 72 l~~~l~-------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~ 136 (478)
+..+++ ++|+|||+|+...... +..+.+..+++|+.++.++++++.+. +.+++|++||...+.+.
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~ 161 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPM 161 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCC
Confidence 877664 4799999998643222 22345677899999999999998754 34589999997653110
Q ss_pred ccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCC
Q 011770 137 KEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLV 216 (478)
Q Consensus 137 ~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~ 216 (478)
.+ ...|+.+|.+.|.+++....+ + ...+++++.++|+.+..+.... ..........+
T Consensus 162 ------------~~----~~~Y~~sK~a~~~~~~~la~e-~---~~~~i~v~~i~Pg~~~t~~~~~---~~~~~~~~~~~ 218 (256)
T PRK12748 162 ------------PD----ELAYAATKGAIEAFTKSLAPE-L---AEKGITVNAVNPGPTDTGWITE---ELKHHLVPKFP 218 (256)
T ss_pred ------------CC----chHHHHHHHHHHHHHHHHHHH-H---HHhCeEEEEEEeCcccCCCCCh---hHHHhhhccCC
Confidence 01 256999999999998765431 1 1368999999999887664321 11111111111
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
. ..+.-.+|+++++..++.. ......|+.+++.+|
T Consensus 219 ~---------~~~~~~~~~a~~~~~l~~~---------~~~~~~g~~~~~d~g 253 (256)
T PRK12748 219 Q---------GRVGEPVDAARLIAFLVSE---------EAKWITGQVIHSEGG 253 (256)
T ss_pred C---------CCCcCHHHHHHHHHHHhCc---------ccccccCCEEEecCC
Confidence 0 1233468999998876642 112356888888665
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=163.64 Aligned_cols=186 Identities=20% Similarity=0.117 Sum_probs=128.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---cc---ccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HL---LINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~---~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
.++++|+|+||||+|+||++++++|+++|++ |++++|+...... .. .....+.++++|++|.++++++++
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~-vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAH-VVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999999998 9999886542110 00 012457889999999998887765
Q ss_pred ----CcCEEEEcccCCCCch--hhhchhhhhHhhhHH----HHHHHHHHHHcCCCeEEEEeccceee-CCccccCCCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK--EMLQFGRVDEVNING----TCHVIEACLEFGIQRLVYVSTYNVVF-GGKEIVNGNESL 146 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~--~~~~~~~~~~vNv~g----t~nll~aa~~~~v~r~V~~SS~~v~~-g~~~~~~~~E~~ 146 (478)
++|+|||+||...... +....+..+++|+.| +..+++.+++.+.+++|++||...+. +.......+++.
T Consensus 91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~ 170 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWER 170 (306)
T ss_pred hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCccc
Confidence 5899999999643322 223446678999999 66677777776667999999987532 221111111222
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceE--EEEeCCceeCCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYT--CAVRPAAIYGPGEE 201 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~--~ilRp~~vyGp~~~ 201 (478)
++.+ ..+|+.||++.+.+.+.+..+ +. ..++++ +.+.||.|..+...
T Consensus 171 ~~~~----~~~Y~~SK~a~~~~~~~la~~-l~---~~~i~v~~v~~~PG~v~T~~~~ 219 (306)
T PRK06197 171 RYNR----VAAYGQSKLANLLFTYELQRR-LA---AAGATTIAVAAHPGVSNTELAR 219 (306)
T ss_pred CCCc----HHHHHHHHHHHHHHHHHHHHH-hh---cCCCCeEEEEeCCCcccCcccc
Confidence 2222 368999999999998776532 11 245444 45589999776443
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=159.30 Aligned_cols=224 Identities=17% Similarity=0.129 Sum_probs=155.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc----cc--CCCeEEEEecCCCHHHHHHHhc---
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL----LI--NHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~----~~--~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
.++++|+++||||+|.||+++++.|.++|++ |++++|+.+...... .. ..++.++.+|++|.++++++++
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGAD-VLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999998 999998754211100 01 2457889999999988776654
Q ss_pred ----CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ----GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+|+..... ....+.+..+++|+.++.++++++.+ .+.+++|++||...+.+..
T Consensus 84 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~-------- 155 (257)
T PRK09242 84 DHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVR-------- 155 (257)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCC--------
Confidence 579999999964221 23345677889999999999998853 4557999999986532110
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g 223 (478)
+ ...|+.+|...+.+++....+ + ...+++++.++|+.+.+|...... +..........+.
T Consensus 156 ----~----~~~Y~~sK~a~~~~~~~la~e-~---~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~------ 217 (257)
T PRK09242 156 ----S----GAPYGMTKAALLQMTRNLAVE-W---AEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPM------ 217 (257)
T ss_pred ----C----CcchHHHHHHHHHHHHHHHHH-H---HHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCC------
Confidence 1 257999999999998765431 1 146899999999999988644321 2222222222211
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.-+...+|++.++..++... .....|+.+.+.+|
T Consensus 218 ---~~~~~~~~va~~~~~l~~~~---------~~~~~g~~i~~~gg 251 (257)
T PRK09242 218 ---RRVGEPEEVAAAVAFLCMPA---------ASYITGQCIAVDGG 251 (257)
T ss_pred ---CCCcCHHHHHHHHHHHhCcc---------cccccCCEEEECCC
Confidence 12335789999998877521 12346777777654
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=163.17 Aligned_cols=202 Identities=17% Similarity=0.159 Sum_probs=142.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhc--------CcC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAAR--------GVD 80 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~--------~~D 80 (478)
||++|||||+|+||++++++|+++|++ |++++|+.+..... ......++++++|++|.+++.++++ ++|
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWR-VGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 478999999999999999999999998 99999875521111 1113468899999999998887665 469
Q ss_pred EEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+|+..... .+..+.+..+++|+.++.++++++.+ .+..++|++||...+++...
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------------- 145 (260)
T PRK08267 80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPG-------------- 145 (260)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCC--------------
Confidence 999999965322 12345677889999999999998864 34568999999866444221
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
...|+.||...|.+......+ + ...++++++++|+.+-.+............... ...-.+..
T Consensus 146 --~~~Y~~sKaa~~~~~~~l~~~-~---~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~-----------~~~~~~~~ 208 (260)
T PRK08267 146 --LAVYSATKFAVRGLTEALDLE-W---RRHGIRVADVMPLFVDTAMLDGTSNEVDAGSTK-----------RLGVRLTP 208 (260)
T ss_pred --chhhHHHHHHHHHHHHHHHHH-h---cccCcEEEEEecCCcCCcccccccchhhhhhHh-----------hccCCCCH
Confidence 257999999999988776432 1 146899999999998765322100000000000 00112456
Q ss_pred HHHHHHHHHHHh
Q 011770 233 DNLVLALILASM 244 (478)
Q Consensus 233 ~Dva~a~~~a~~ 244 (478)
+|++++++.+++
T Consensus 209 ~~va~~~~~~~~ 220 (260)
T PRK08267 209 EDVAEAVWAAVQ 220 (260)
T ss_pred HHHHHHHHHHHh
Confidence 899999999886
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=157.96 Aligned_cols=224 Identities=17% Similarity=0.150 Sum_probs=153.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-cc--ccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-HL--LINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-~~--~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
.+++++++||||+|+||++++++|+++|++ |++++|+...... .. ....++.++++|++|.+++.++++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999999998 9999887531100 00 112457789999999999888765
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
.+|+|||+|+...... +..+.+..+++|+.++.++++++.+ .+..++|++||....... .
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~ 149 (263)
T PRK08226 82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVA------------D 149 (263)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccC------------C
Confidence 5799999999643222 2234456788999999999998764 345689999996531100 0
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--------HHHHHHHHHcCCCCeeeC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--------LPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--------~~~~i~~~~~g~~~~~~g 221 (478)
| ....|+.+|...|.+++.+.... ...+++++.++|+.+.++-.... .......+..+.+
T Consensus 150 ~---~~~~Y~~sK~a~~~~~~~la~~~----~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 217 (263)
T PRK08226 150 P---GETAYALTKAAIVGLTKSLAVEY----AQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIP----- 217 (263)
T ss_pred C---CcchHHHHHHHHHHHHHHHHHHh----cccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCC-----
Confidence 1 12569999999999987765321 13589999999999988732211 1122233332221
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+...+|+++++..++.. ......|+.+.+.+|
T Consensus 218 ----~~~~~~~~~va~~~~~l~~~---------~~~~~~g~~i~~dgg 252 (263)
T PRK08226 218 ----LRRLADPLEVGELAAFLASD---------ESSYLTGTQNVIDGG 252 (263)
T ss_pred ----CCCCCCHHHHHHHHHHHcCc---------hhcCCcCceEeECCC
Confidence 12355789999998776642 122456777777655
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=159.76 Aligned_cols=207 Identities=18% Similarity=0.138 Sum_probs=145.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++++|+||||+|+||++++++|.++|++ |++++|+....... . ....+++++.+|+++.+++.++++
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 366799999999999999999999999998 99998875421110 0 113458899999999999888775
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C--------CCeEEEEeccceeeCCcccc
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G--------IQRLVYVSTYNVVFGGKEIV 140 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~--------v~r~V~~SS~~v~~g~~~~~ 140 (478)
++|+|||+|+...... ...+++..+++|+.++.++++++... . ..++|++||...+.+.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---- 160 (258)
T PRK06949 85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVL---- 160 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCC----
Confidence 5899999999643221 23456678899999999999987642 1 2589999997653110
Q ss_pred CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCee
Q 011770 141 NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFK 219 (478)
Q Consensus 141 ~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~ 219 (478)
| ...+|+.+|...|.+++.+..+. ...++++++++|+.|++|...... ......+..-.+
T Consensus 161 ---------~---~~~~Y~~sK~a~~~~~~~la~~~----~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~--- 221 (258)
T PRK06949 161 ---------P---QIGLYCMSKAAVVHMTRAMALEW----GRHGINVNAICPGYIDTEINHHHWETEQGQKLVSMLP--- 221 (258)
T ss_pred ---------C---CccHHHHHHHHHHHHHHHHHHHH----HhcCeEEEEEeeCCCcCCcchhccChHHHHHHHhcCC---
Confidence 0 12579999999999997765321 136899999999999998654321 111111111111
Q ss_pred eCCCCccccceeHHHHHHHHHHHHh
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
...+.--+|+++++..++.
T Consensus 222 ------~~~~~~p~~~~~~~~~l~~ 240 (258)
T PRK06949 222 ------RKRVGKPEDLDGLLLLLAA 240 (258)
T ss_pred ------CCCCcCHHHHHHHHHHHhC
Confidence 1134446899999988765
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-17 Score=158.38 Aligned_cols=225 Identities=16% Similarity=0.183 Sum_probs=156.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+.+.+++++||||+|+||.+++++|+++|++ |++++|+....... . ....++.++++|++|.++++++++
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999 99998765421110 0 112358889999999999888775
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
.+|+|||+||..... .+..+....+++|+.|+..+.+++.+ .+..++|++||....++..
T Consensus 85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 154 (265)
T PRK07097 85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRE---------- 154 (265)
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCC----------
Confidence 479999999975322 23345677788999999988887764 4567999999975433211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--------HHHHHHHHcCCCCee
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--------PRIVSLAKLGLVPFK 219 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--------~~~i~~~~~g~~~~~ 219 (478)
....|+.+|...+.+++.+..+ + ...|++++.++|+.+.++...... ..+...+....+
T Consensus 155 ------~~~~Y~~sKaal~~l~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 221 (265)
T PRK07097 155 ------TVSAYAAAKGGLKMLTKNIASE-Y---GEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTP--- 221 (265)
T ss_pred ------CCccHHHHHHHHHHHHHHHHHH-h---hhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCC---
Confidence 1257999999999999877542 1 146899999999999988532210 001111111111
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|+++++..++... .....|+.+++.+|.
T Consensus 222 ------~~~~~~~~dva~~~~~l~~~~---------~~~~~g~~~~~~gg~ 257 (265)
T PRK07097 222 ------AARWGDPEDLAGPAVFLASDA---------SNFVNGHILYVDGGI 257 (265)
T ss_pred ------ccCCcCHHHHHHHHHHHhCcc---------cCCCCCCEEEECCCc
Confidence 123556799999999887631 224567777776653
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=156.70 Aligned_cols=220 Identities=18% Similarity=0.175 Sum_probs=150.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
|++|||||+|+||++++++|+++|++ |+++.|+.+..... .....++.++.+|++|++++.++++ ++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYR-VAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI 79 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999998 99988743321110 0113468899999999988877664 47
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHH----HHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEA----CLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~a----a~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+|+..... ....+....+++|+.++.+++++ +++.+.+++|++||.....+.. +
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~------------~- 146 (242)
T TIGR01829 80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQF------------G- 146 (242)
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCC------------C-
Confidence 9999999864321 12334566788999998775555 4556778999999975432211 0
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.+|...+.+++....+ + ...++++++++|+.+.++......+........+.+. ..+..
T Consensus 147 ---~~~y~~sk~a~~~~~~~la~~-~---~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~~~~ 210 (242)
T TIGR01829 147 ---QTNYSAAKAGMIGFTKALAQE-G---ATKGVTVNTISPGYIATDMVMAMREDVLNSIVAQIPV---------GRLGR 210 (242)
T ss_pred ---cchhHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEeeCCCcCccccccchHHHHHHHhcCCC---------CCCcC
Confidence 156999999998887765432 1 1468999999999999886544334444333333221 12344
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+|+++++..+... ......|+.+.+.+|.
T Consensus 211 ~~~~a~~~~~l~~~---------~~~~~~G~~~~~~gg~ 240 (242)
T TIGR01829 211 PEEIAAAVAFLASE---------EAGYITGATLSINGGL 240 (242)
T ss_pred HHHHHHHHHHHcCc---------hhcCccCCEEEecCCc
Confidence 68899988765542 1223578888888764
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=157.16 Aligned_cols=221 Identities=18% Similarity=0.146 Sum_probs=146.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+|+|+||||+|+||+++++.|+++|++ |++..++++..... . ....++.++++|++|.+++.++++ +
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWS-VGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR 80 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999998 87765544321111 0 112468899999999998877654 5
Q ss_pred cCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHc-CC------CeEEEEeccceeeCCccccCCCCCC
Q 011770 79 VDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEF-GI------QRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 79 ~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~-~v------~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
+|+|||+|+..... ....+....+++|+.++.++++++.+. .. .++|++||...+++...
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~-------- 152 (248)
T PRK06947 81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPN-------- 152 (248)
T ss_pred CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCC--------
Confidence 89999999964321 122344567889999999888655542 22 35999999876443211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeCCCCc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
+ ...|+.||...+.++..+..+ + ...+++++++||+.+..|.... ..+..........+
T Consensus 153 ---~----~~~Y~~sK~~~~~~~~~la~~-~---~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~--------- 212 (248)
T PRK06947 153 ---E----YVDYAGSKGAVDTLTLGLAKE-L---GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTP--------- 212 (248)
T ss_pred ---C----CcccHhhHHHHHHHHHHHHHH-h---hhhCcEEEEEeccCcccccccccCCHHHHHHHhhcCC---------
Confidence 0 136999999999988766532 1 1358999999999999885321 11211111111110
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
..-....+|++++++.++.. ......|+.+.+.+|
T Consensus 213 ~~~~~~~e~va~~~~~l~~~---------~~~~~~G~~~~~~gg 247 (248)
T PRK06947 213 LGRAGEADEVAETIVWLLSD---------AASYVTGALLDVGGG 247 (248)
T ss_pred CCCCcCHHHHHHHHHHHcCc---------cccCcCCceEeeCCC
Confidence 01135689999999887763 122456777766543
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=158.40 Aligned_cols=220 Identities=15% Similarity=0.172 Sum_probs=148.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cc-c---CCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LL-I---NHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~-~---~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++||||+|+||.++++.|.++|++ |++++|+....... .. . ...+..+++|++|.+++.++++ +
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAK-VFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG 79 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 4899999999999999999999998 99999873321110 00 0 1124468899999998877664 5
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhH----HHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNIN----GTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~----gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+|+...... +..+....+++|+. ++.++++++++.+.+++|++||...+.+...
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~------------ 147 (251)
T PRK07069 80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPD------------ 147 (251)
T ss_pred ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCCC------------
Confidence 799999999653321 22344567788988 7888888888888889999999877432111
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-----HHHHHHHcCCCCeeeCCCCc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-----RIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-----~~i~~~~~g~~~~~~g~g~~ 225 (478)
...|+.+|...+.+++.+..+... ...++++++++|+.+.+|....... .....+.++. .
T Consensus 148 ----~~~Y~~sK~a~~~~~~~la~e~~~--~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~ 212 (251)
T PRK07069 148 ----YTAYNASKAAVASLTKSIALDCAR--RGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV---------P 212 (251)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHhcc--cCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC---------C
Confidence 246999999999998765432111 1346899999999999886432211 1111122221 1
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+.+++|++++++.++.. ......|+...+.+|
T Consensus 213 ~~~~~~~~~va~~~~~l~~~---------~~~~~~g~~i~~~~g 247 (251)
T PRK07069 213 LGRLGEPDDVAHAVLYLASD---------ESRFVTGAELVIDGG 247 (251)
T ss_pred CCCCcCHHHHHHHHHHHcCc---------cccCccCCEEEECCC
Confidence 22456799999999887642 122456777666544
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=157.80 Aligned_cols=215 Identities=17% Similarity=0.106 Sum_probs=152.1
Q ss_pred EEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHHHhcC---cCEEEEcccC
Q 011770 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEKAARG---VDCVFHVASY 88 (478)
Q Consensus 15 LVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~~l~~---~D~ViHlAa~ 88 (478)
+||||+|+||++++++|+++|++ |++++|++....... ....+++++.+|++|.+++.++++. +|++||+|+.
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGAR-VTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 69999999999999999999998 999998744211100 0134688999999999999998874 7999999986
Q ss_pred CCCch----hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHH
Q 011770 89 GMSGK----EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 89 ~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~ 164 (478)
..... +..+....+++|+.++.++.++....+..++|++||...+.+.+ +.+.|+.+|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~~----------------~~~~Y~~sK~a 143 (230)
T PRK07041 80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPSA----------------SGVLQGAINAA 143 (230)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCCC----------------cchHHHHHHHH
Confidence 43321 23456778899999999999977666677999999987642111 12579999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc----HHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHH
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH----LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~----~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~ 240 (478)
.|.+++....+ ..+++++.++|+.+-.+..... ...+........+. ..+...+|+++++.
T Consensus 144 ~~~~~~~la~e------~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~dva~~~~ 208 (230)
T PRK07041 144 LEALARGLALE------LAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPA---------RRVGQPEDVANAIL 208 (230)
T ss_pred HHHHHHHHHHH------hhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCC---------CCCcCHHHHHHHHH
Confidence 99999876532 2358899999998866532110 01122222222111 12346799999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 241 ~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.++.. ....|+.|++.+|.++
T Consensus 209 ~l~~~-----------~~~~G~~~~v~gg~~~ 229 (230)
T PRK07041 209 FLAAN-----------GFTTGSTVLVDGGHAI 229 (230)
T ss_pred HHhcC-----------CCcCCcEEEeCCCeec
Confidence 88762 2456889999887654
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=162.76 Aligned_cols=202 Identities=14% Similarity=0.121 Sum_probs=141.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
|+|+||||+|+||++++++|.++|++ |++.+|+....... .....++.++++|++|.+++.++++ ++|
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWR-LALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 47999999999999999999999998 99998875431110 1123467889999999998887765 689
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHH----HHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEA----CLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~a----a~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+|+...... ...+.+..+++|+.++.++.++ +++.+..++|++||...+.+..
T Consensus 80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~--------------- 144 (270)
T PRK05650 80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGP--------------- 144 (270)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCC---------------
Confidence 9999999654322 2234456778998888876665 4566778999999987632111
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---HHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
....|+.+|+..+.+...+..+ + ...++++++++|+.+.++..... .+........ .....+
T Consensus 145 -~~~~Y~~sKaa~~~~~~~l~~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~----------~~~~~~ 209 (270)
T PRK05650 145 -AMSSYNVAKAGVVALSETLLVE-L---ADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGK----------LLEKSP 209 (270)
T ss_pred -CchHHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEecCccccCcccccccCchhHHHHHHH----------HhhcCC
Confidence 1257999999988777655432 1 14689999999999988754321 1111111110 001235
Q ss_pred eeHHHHHHHHHHHHh
Q 011770 230 IYVDNLVLALILASM 244 (478)
Q Consensus 230 v~V~Dva~a~~~a~~ 244 (478)
++++|+|+.++.+++
T Consensus 210 ~~~~~vA~~i~~~l~ 224 (270)
T PRK05650 210 ITAADIADYIYQQVA 224 (270)
T ss_pred CCHHHHHHHHHHHHh
Confidence 789999999999987
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-18 Score=162.65 Aligned_cols=226 Identities=16% Similarity=0.153 Sum_probs=153.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
|+++++++++||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.+++.++++
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 45577899999999999999999999999999 99999875421111 0112356788999999998888765
Q ss_pred ---CcCEEEEcccCCCC----chhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 ---GVDCVFHVASYGMS----GKEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~----~~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+.... ..+..+....+++|+.|+.++++++.+. .-.++|++||...+.+.
T Consensus 83 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~----------- 151 (264)
T PRK07576 83 EFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPM----------- 151 (264)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCC-----------
Confidence 46999999974321 1123345667889999999999988753 12589999997653110
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC-CCCcHH--HHHHHHHcCCCCeeeCCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG-EERHLP--RIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~-~~~~~~--~~i~~~~~g~~~~~~g~g~ 224 (478)
| ....|+.+|...|.+++....+ + ...++++++++|+.+.+.. .....+ ..........
T Consensus 152 --~---~~~~Y~asK~a~~~l~~~la~e-~---~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~~--------- 213 (264)
T PRK07576 152 --P---MQAHVCAAKAGVDMLTRTLALE-W---GPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQSV--------- 213 (264)
T ss_pred --C---CccHHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhcC---------
Confidence 1 1257999999999999876432 1 1368999999999987532 111111 0111111111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+...+|++++++.++.. ......|+.+.+.+|.
T Consensus 214 ~~~~~~~~~dva~~~~~l~~~---------~~~~~~G~~~~~~gg~ 250 (264)
T PRK07576 214 PLKRNGTKQDIANAALFLASD---------MASYITGVVLPVDGGW 250 (264)
T ss_pred CCCCCCCHHHHHHHHHHHcCh---------hhcCccCCEEEECCCc
Confidence 123456789999999988762 1123567777777664
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=180.14 Aligned_cols=234 Identities=21% Similarity=0.245 Sum_probs=155.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc----cCCCeEEEEecCCCHHHHHHHhc----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL----INHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~----~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
.+++|++|||||+|+||++++++|.++|++ |++++|+....... .. ....+..+++|++|.+++.++++
T Consensus 411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga~-Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~ 489 (676)
T TIGR02632 411 TLARRVAFVTGGAGGIGRETARRLAAEGAH-VVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL 489 (676)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999998 99999875421110 00 12346789999999999988776
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcC-CCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFG-IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~-v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+|+...... ...+....+++|+.++.++.+.+. +.+ -.++|++||.+.+++...
T Consensus 490 ~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~------- 562 (676)
T TIGR02632 490 AYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKN------- 562 (676)
T ss_pred hcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCC-------
Confidence 6899999999643222 223456778899999877765544 333 248999999876443221
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCcee-CCCCCCcHHHHHHHHHcCCCC----eee
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIY-GPGEERHLPRIVSLAKLGLVP----FKI 220 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vy-Gp~~~~~~~~~i~~~~~g~~~----~~~ 220 (478)
...|+.||...|.+++.+..+ + +..|+++..++|+.|+ |.+...--....+....+... ..+
T Consensus 563 ---------~~aY~aSKaA~~~l~r~lA~e-l---~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (676)
T TIGR02632 563 ---------ASAYSAAKAAEAHLARCLAAE-G---GTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHY 629 (676)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHH
Confidence 257999999999999876532 1 2468999999999987 433211000000000011100 001
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
........+++.+|+|+++..++... .....|+.+++.+|..
T Consensus 630 ~~r~~l~r~v~peDVA~av~~L~s~~---------~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 630 AKRTLLKRHIFPADIAEAVFFLASSK---------SEKTTGCIITVDGGVP 671 (676)
T ss_pred HhcCCcCCCcCHHHHHHHHHHHhCCc---------ccCCcCcEEEECCCch
Confidence 12223356789999999999776521 2245688999987754
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=157.38 Aligned_cols=223 Identities=17% Similarity=0.209 Sum_probs=154.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--ccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--LINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
.+++|+++||||+|.||++++++|.++|++ |++++|+........ ....++.++++|++|.+++.++++ +
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 467799999999999999999999999999 999887543211111 123457889999999999888775 5
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
+|++||+|+...... +..+++..+++|+.++.++.+++.+. + -.++|++||...+.+...
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~----------- 152 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIR----------- 152 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCC-----------
Confidence 799999999643221 33466778899999999988887643 2 258999999876422110
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCCccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
...|+.||...+.+++....+ + ..+|+++.+++|+.+-.+...... ......+....+ ..
T Consensus 153 -----~~~Y~asK~a~~~l~~~la~e-~---~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p---------~~ 214 (251)
T PRK12481 153 -----VPSYTASKSAVMGLTRALATE-L---SQYNINVNAIAPGYMATDNTAALRADTARNEAILERIP---------AS 214 (251)
T ss_pred -----CcchHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCC---------CC
Confidence 146999999999998766432 1 147899999999999665322110 111111211111 11
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.+...+|+++++..++.. ......|+...+.+|
T Consensus 215 ~~~~peeva~~~~~L~s~---------~~~~~~G~~i~vdgg 247 (251)
T PRK12481 215 RWGTPDDLAGPAIFLSSS---------ASDYVTGYTLAVDGG 247 (251)
T ss_pred CCcCHHHHHHHHHHHhCc---------cccCcCCceEEECCC
Confidence 356789999999887752 123466777777655
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=162.13 Aligned_cols=166 Identities=22% Similarity=0.209 Sum_probs=125.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~Vi 83 (478)
||+++||||+|+||++++++|.++|++ |++++|+.... ......+++++.+|++|.+++.++++ ++|+||
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi 77 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYE-VWATARKAEDV--EALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLI 77 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHH--HHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 478999999999999999999999998 99999875421 11123457889999999998887664 579999
Q ss_pred EcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 84 HVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 84 HlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
|+|+...... +..+....+++|+.|+.++++++... +..++|++||...+.+.. ...
T Consensus 78 ~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------~~~ 141 (274)
T PRK05693 78 NNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTP----------------FAG 141 (274)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCC----------------Ccc
Confidence 9999643321 23456678899999999999988542 446899999976532211 125
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
+|+.||...|.++.....+ + ...|+++++++|+.|..+-
T Consensus 142 ~Y~~sK~al~~~~~~l~~e-~---~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 142 AYCASKAAVHALSDALRLE-L---APFGVQVMEVQPGAIASQF 180 (274)
T ss_pred HHHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEecCcccccc
Confidence 7999999999987665421 1 1478999999999998763
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=157.36 Aligned_cols=220 Identities=15% Similarity=0.156 Sum_probs=151.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
++++|+++||||+|+||++++++|+++|++ |++++++.... ...++.++++|++|+++++++++ .+|
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~-v~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 79 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGAN-VVNADIHGGDG-----QHENYQFVPTDVSSAEEVNHTVAEIIEKFGRID 79 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCcccc-----ccCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467789999999999999999999999998 99998876521 23467889999999998887765 479
Q ss_pred EEEEcccCCCCc-------------hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCC
Q 011770 81 CVFHVASYGMSG-------------KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 81 ~ViHlAa~~~~~-------------~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
+|||+|+..... .+..+.+..+++|+.++.++++++.+. +..++|++||...+.+..
T Consensus 80 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------ 153 (266)
T PRK06171 80 GLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSE------ 153 (266)
T ss_pred EEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCCC------
Confidence 999999964221 123445678899999999999998754 345899999987632211
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCcee-CCCCCCcH------------HHHHHH
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIY-GPGEERHL------------PRIVSL 210 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vy-Gp~~~~~~------------~~~i~~ 210 (478)
....|+.+|...|.+++....+ + ...|+++.+++|+.+- .+...... ..+...
T Consensus 154 ----------~~~~Y~~sK~a~~~l~~~la~e-~---~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (266)
T PRK06171 154 ----------GQSCYAATKAALNSFTRSWAKE-L---GKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAG 219 (266)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhh
Confidence 1257999999999998776532 1 1468999999999884 22111100 011111
Q ss_pred HHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 211 AKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 211 ~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
..... ......+...+|+++++..++.. ......|++.++.+|
T Consensus 220 ~~~~~-------~~p~~r~~~~~eva~~~~fl~s~---------~~~~itG~~i~vdgg 262 (266)
T PRK06171 220 YTKTS-------TIPLGRSGKLSEVADLVCYLLSD---------RASYITGVTTNIAGG 262 (266)
T ss_pred hcccc-------cccCCCCCCHHHhhhheeeeecc---------ccccceeeEEEecCc
Confidence 11100 01112356679999998877642 122456788877655
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-17 Score=156.66 Aligned_cols=194 Identities=20% Similarity=0.167 Sum_probs=141.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++++||||+|+||++++++|.++|++ |++++|++...... ......+.++++|++|.+++.++++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRD-LALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999998 99999875421110 0013358889999999998877664
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+||...... ........+++|+.++.++++++. +.+.+++|++||...+++...
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 149 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPG----------- 149 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCC-----------
Confidence 5899999999643322 223445678899999999998875 446779999999766433210
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
+.+.|+.||...+.++.....+ + ...++++++++|+.+.++.... . +. ....
T Consensus 150 ----~~~~Y~~sK~a~~~~~~~l~~~-~---~~~~i~v~~v~pg~v~t~~~~~--------~--~~----------~~~~ 201 (248)
T PRK08251 150 ----VKAAYAASKAGVASLGEGLRAE-L---AKTPIKVSTIEPGYIRSEMNAK--------A--KS----------TPFM 201 (248)
T ss_pred ----CcccHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEecCcCcchhhhc--------c--cc----------CCcc
Confidence 1257999999999888765432 1 1368999999999997763221 0 00 1124
Q ss_pred eeHHHHHHHHHHHHh
Q 011770 230 IYVDNLVLALILASM 244 (478)
Q Consensus 230 v~V~Dva~a~~~a~~ 244 (478)
+..+|.|++++.+++
T Consensus 202 ~~~~~~a~~i~~~~~ 216 (248)
T PRK08251 202 VDTETGVKALVKAIE 216 (248)
T ss_pred CCHHHHHHHHHHHHh
Confidence 678999999999887
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-17 Score=155.96 Aligned_cols=225 Identities=17% Similarity=0.154 Sum_probs=154.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++|+++||||+|.||.+++++|+++|++ |++++|+....... . ....++..+.+|++|.+++.++++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 466799999999999999999999999998 99998865421110 0 112457789999999999887765
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+|+...... +..+.+..+++|+.++.++.+++.+. + -.++|++||.+......
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 154 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINV---------- 154 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCC----------
Confidence 6899999999643221 23345667899999999999988643 2 23699998875411100
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
| .....|+.||...|.+++....+ + ...|+++.+++|+.|-.+..... +..........+ ..
T Consensus 155 --~--~~~~~Y~asKaal~~~~~~la~e-~---~~~gI~vn~i~PG~v~t~~~~~~-~~~~~~~~~~~~---------~~ 216 (253)
T PRK05867 155 --P--QQVSHYCASKAAVIHLTKAMAVE-L---APHKIRVNSVSPGYILTELVEPY-TEYQPLWEPKIP---------LG 216 (253)
T ss_pred --C--CCccchHHHHHHHHHHHHHHHHH-H---hHhCeEEEEeecCCCCCcccccc-hHHHHHHHhcCC---------CC
Confidence 0 01257999999999999877532 1 14689999999999977643321 111122222111 12
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 217 r~~~p~~va~~~~~L~s~---------~~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 217 RLGRPEELAGLYLYLASE---------ASSYMTGSDIVIDGGY 250 (253)
T ss_pred CCcCHHHHHHHHHHHcCc---------ccCCcCCCeEEECCCc
Confidence 356789999999888752 1234678888887664
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=156.53 Aligned_cols=199 Identities=13% Similarity=0.109 Sum_probs=141.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+||+++||||+|+||++++++|+++|++ |++++|++...... .....++.++.+|++|.+++.++++ +
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWD-LALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4679999999999999999999999998 99999875421110 0112468889999999998877765 4
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+|+...... ...+.+..+++|+.++.++++++. +.+.+++|++||...+.+. .
T Consensus 84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~- 150 (241)
T PRK07454 84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAF------------P- 150 (241)
T ss_pred CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCC------------C-
Confidence 899999999643221 223456778899999988887764 3456789999998763211 0
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...+|+.+|...+.+++...... ...+++++++||+.+-.+..... ...... .....+
T Consensus 151 ---~~~~Y~~sK~~~~~~~~~~a~e~----~~~gi~v~~i~pg~i~t~~~~~~-----------~~~~~~----~~~~~~ 208 (241)
T PRK07454 151 ---QWGAYCVSKAALAAFTKCLAEEE----RSHGIRVCTITLGAVNTPLWDTE-----------TVQADF----DRSAML 208 (241)
T ss_pred ---CccHHHHHHHHHHHHHHHHHHHh----hhhCCEEEEEecCcccCCccccc-----------cccccc----ccccCC
Confidence 12579999999999887654211 14689999999999977642210 000000 011346
Q ss_pred eHHHHHHHHHHHHh
Q 011770 231 YVDNLVLALILASM 244 (478)
Q Consensus 231 ~V~Dva~a~~~a~~ 244 (478)
..+|+|++++.++.
T Consensus 209 ~~~~va~~~~~l~~ 222 (241)
T PRK07454 209 SPEQVAQTILHLAQ 222 (241)
T ss_pred CHHHHHHHHHHHHc
Confidence 89999999999886
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=159.39 Aligned_cols=226 Identities=16% Similarity=0.208 Sum_probs=152.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++|++|||||+|+||.+++++|+++|++ |++++|+ +..... . ....++.++++|++|.+++.++++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAY-VLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 467889999999999999999999999998 9999987 321110 0 112358889999999988877665
Q ss_pred -CcCEEEEcccCCCC-ch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMS-GK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~-~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+|+.... .. +....+..+++|+.++..+.+++.. .+ .++|++||...+.+..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~---------- 149 (272)
T PRK08589 81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAADL---------- 149 (272)
T ss_pred CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCCC----------
Confidence 47999999996432 11 2234567788999999877777654 34 5899999986532110
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH----HHHHHHHcCCCCeeeCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP----RIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~----~~i~~~~~g~~~~~~g~g 223 (478)
....|+.||...+.+++....+ + +..|++++++.|+.|..+....... ............ .
T Consensus 150 ------~~~~Y~asKaal~~l~~~la~e-~---~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~---- 214 (272)
T PRK08589 150 ------YRSGYNAAKGAVINFTKSIAIE-Y---GRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKW-M---- 214 (272)
T ss_pred ------CCchHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhc-c----
Confidence 1257999999999999876532 1 2468999999999998764321100 000111100000 0
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.....+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 215 ~~~~~~~~~~~va~~~~~l~s~---------~~~~~~G~~i~vdgg~ 252 (272)
T PRK08589 215 TPLGRLGKPEEVAKLVVFLASD---------DSSFITGETIRIDGGV 252 (272)
T ss_pred CCCCCCcCHHHHHHHHHHHcCc---------hhcCcCCCEEEECCCc
Confidence 0112356789999999887752 1234578888886653
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=153.68 Aligned_cols=229 Identities=15% Similarity=0.162 Sum_probs=155.4
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--ccCCCeEEEEecCCCHHHHHHHhc-
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--LINHGVHCIQGDVVSKIDVEKAAR- 77 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~~~~~v~~v~gDl~d~~~l~~~l~- 77 (478)
|.+..+ .+++++++||||+|.||++++++|.++|++ |+++++......... .....+.++++|++|.+++.++++
T Consensus 1 ~~~~~~-~l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 1 MILDAF-SLEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred Cccccc-CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 444432 467899999999999999999999999998 998877543211111 112357889999999998888775
Q ss_pred ------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCC
Q 011770 78 ------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 ------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|++||+|+..... ....+.+..+++|+.++.++++++... + -.++|++||...+.+..
T Consensus 79 ~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 153 (253)
T PRK08993 79 AVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGI----- 153 (253)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCC-----
Confidence 579999999964322 123457788999999999999988653 2 24799999987642211
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeee
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKI 220 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~ 220 (478)
. ...|+.+|++.|.+.+....+. ...|++++.++|+.+-.+...... ....+.+....+
T Consensus 154 -----~------~~~Y~~sKaa~~~~~~~la~e~----~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p---- 214 (253)
T PRK08993 154 -----R------VPSYTASKSGVMGVTRLMANEW----AKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIP---- 214 (253)
T ss_pred -----C------CcchHHHHHHHHHHHHHHHHHh----hhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCC----
Confidence 1 1469999999999887665421 146899999999999776422110 011111211111
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
..-+.-.+|++++++.++.. ......|+.+.+.+|
T Consensus 215 -----~~r~~~p~eva~~~~~l~s~---------~~~~~~G~~~~~dgg 249 (253)
T PRK08993 215 -----AGRWGLPSDLMGPVVFLASS---------ASDYINGYTIAVDGG 249 (253)
T ss_pred -----CCCCcCHHHHHHHHHHHhCc---------cccCccCcEEEECCC
Confidence 11255679999999888752 122456777766544
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-17 Score=162.20 Aligned_cols=206 Identities=19% Similarity=0.154 Sum_probs=141.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++++|+||||+|+||++++++|.++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~-Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAK-VVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 466789999999999999999999999998 99999875421110 0112457889999999999888764
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+|+...... +..+.+..+++|+.|+.++.+++ ++.+..++|++||...+.+.
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~------------ 151 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSI------------ 151 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCC------------
Confidence 5899999999643221 23345667888888777655554 44556789999998764211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
|. ...|+.||...+.+......+ +.. ...++++++++|+.+.+|.... .-... +. .......
T Consensus 152 -~~---~~~Y~asK~a~~~~~~~l~~e-l~~-~~~~I~v~~v~Pg~v~T~~~~~----~~~~~--~~------~~~~~~~ 213 (334)
T PRK07109 152 -PL---QSAYCAAKHAIRGFTDSLRCE-LLH-DGSPVSVTMVQPPAVNTPQFDW----ARSRL--PV------EPQPVPP 213 (334)
T ss_pred -Cc---chHHHHHHHHHHHHHHHHHHH-Hhh-cCCCeEEEEEeCCCccCchhhh----hhhhc--cc------cccCCCC
Confidence 11 257999999998887655321 110 1357999999999997763211 00000 00 0111224
Q ss_pred ceeHHHHHHHHHHHHh
Q 011770 229 WIYVDNLVLALILASM 244 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~ 244 (478)
+...+|+|++++.+++
T Consensus 214 ~~~pe~vA~~i~~~~~ 229 (334)
T PRK07109 214 IYQPEVVADAILYAAE 229 (334)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5678999999999987
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-17 Score=156.51 Aligned_cols=226 Identities=14% Similarity=0.097 Sum_probs=154.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--c---cCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--L---INHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~---~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||+|.||++++++|+++|++ |++++|+........ . ...++.++++|++|.++++++++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGAD-VILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 56789999999999999999999999998 999998754211100 0 13468899999999999888775
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|++||+|+..... .+..+.+..+++|+.++..+.+++. +.+..++|++||.....+.
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~------------- 151 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPI------------- 151 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCC-------------
Confidence 489999999864322 2345667788999888776666554 4556799999998752110
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-----------HHHHHHHHHcCCCCe
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-----------LPRIVSLAKLGLVPF 218 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-----------~~~~i~~~~~g~~~~ 218 (478)
|. ...|+.+|...+.+.+....+ + +.+|+++.++.|+.|-.+..... .+...+.+...
T Consensus 152 ~~---~~~y~asKaal~~l~~~la~e-l---~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 220 (263)
T PRK08339 152 PN---IALSNVVRISMAGLVRTLAKE-L---GPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKP---- 220 (263)
T ss_pred Cc---chhhHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhcc----
Confidence 11 256999999999988776542 2 24789999999999966521110 01111111111
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.....+...+|+++++..++.. ......|+.+.+.+|...|
T Consensus 221 -----~p~~r~~~p~dva~~v~fL~s~---------~~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 221 -----IPLGRLGEPEEIGYLVAFLASD---------LGSYINGAMIPVDGGRLNS 261 (263)
T ss_pred -----CCcccCcCHHHHHHHHHHHhcc---------hhcCccCceEEECCCcccc
Confidence 1112356689999999887752 1224678888887776555
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=156.16 Aligned_cols=194 Identities=13% Similarity=0.034 Sum_probs=140.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhc----CcCE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAAR----GVDC 81 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~----~~D~ 81 (478)
||+++||||+|+||.+++++|+++|++ |++++|+.+...... ....+++++++|++|.++++++++ ++|+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGAR-LYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 468999999999999999999999998 999998765321110 012468899999999999888766 4699
Q ss_pred EEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|||+|+..... .+..+....+++|+.++.++++++.+ .+.+++|++||.....+. |.
T Consensus 80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------~~-- 144 (243)
T PRK07102 80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGR-------------AS-- 144 (243)
T ss_pred EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCC-------------CC--
Confidence 99999853222 12234456788999999999988765 356799999997532111 11
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
...|+.+|...+.+++....+ + ...|+++++++|+.++++.... ...+ ..-....+
T Consensus 145 -~~~Y~~sK~a~~~~~~~l~~e-l---~~~gi~v~~v~pg~v~t~~~~~-----------~~~~--------~~~~~~~~ 200 (243)
T PRK07102 145 -NYVYGSAKAALTAFLSGLRNR-L---FKSGVHVLTVKPGFVRTPMTAG-----------LKLP--------GPLTAQPE 200 (243)
T ss_pred -CcccHHHHHHHHHHHHHHHHH-h---hccCcEEEEEecCcccChhhhc-----------cCCC--------ccccCCHH
Confidence 246999999999998776431 1 1468999999999999873211 0000 01245689
Q ss_pred HHHHHHHHHHh
Q 011770 234 NLVLALILASM 244 (478)
Q Consensus 234 Dva~a~~~a~~ 244 (478)
|++++++.+++
T Consensus 201 ~~a~~i~~~~~ 211 (243)
T PRK07102 201 EVAKDIFRAIE 211 (243)
T ss_pred HHHHHHHHHHh
Confidence 99999998886
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-17 Score=158.39 Aligned_cols=200 Identities=18% Similarity=0.175 Sum_probs=142.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+.+++++++||||+|+||.+++++|.++|++ |++++|+....... . .....+.++++|++|.+++.++++
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~-Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGAT-VVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999998 99999875421110 0 012347789999999999888776
Q ss_pred --CcCEEEEcccCCCCchh------hhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 --GVDCVFHVASYGMSGKE------MLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~~------~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+||....... ..+.+..+++|+.|+.++++++. +.+..++|++||.+++.+.
T Consensus 115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 185 (293)
T PRK05866 115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEA--------- 185 (293)
T ss_pred cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC---------
Confidence 68999999996533221 12345678899999888887765 5566799999997653111
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCc
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
. |. .+.|+.||+..+.++.....+ + ...++++++++|+.+-.+.... ... ..+
T Consensus 186 ~---p~---~~~Y~asKaal~~l~~~la~e-~---~~~gI~v~~v~pg~v~T~~~~~-----------~~~--~~~---- 238 (293)
T PRK05866 186 S---PL---FSVYNASKAALSAVSRVIETE-W---GDRGVHSTTLYYPLVATPMIAP-----------TKA--YDG---- 238 (293)
T ss_pred C---CC---cchHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEEcCcccCccccc-----------ccc--ccC----
Confidence 1 11 257999999999988765432 1 1468999999999886553211 000 001
Q ss_pred cccceeHHHHHHHHHHHHh
Q 011770 226 KTDWIYVDNLVLALILASM 244 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~ 244 (478)
...+..+++|+.++.+++
T Consensus 239 -~~~~~pe~vA~~~~~~~~ 256 (293)
T PRK05866 239 -LPALTADEAAEWMVTAAR 256 (293)
T ss_pred -CCCCCHHHHHHHHHHHHh
Confidence 123578999999999887
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=150.11 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=148.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~Vi 83 (478)
+|+++||||+|.||++++++|.++|++ |++++|++.... ......+++++.+|++|.++++++++ ++|++|
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv 79 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQP-VIVSYRTHYPAI-DGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAII 79 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchhHH-HHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEE
Confidence 579999999999999999999999998 999998764321 11222357889999999988877654 479999
Q ss_pred EcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C--CCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 84 HVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 84 HlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|+|+..... ....+.+..+++|+.++..+.+++.+. + ..++|++||.....+. +
T Consensus 80 ~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~----------~------ 143 (236)
T PRK06483 80 HNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGS----------D------ 143 (236)
T ss_pred ECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCC----------C------
Confidence 999864222 123456788899999998887777653 2 3589999986542110 0
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
....|+.||...|.+++.+..+ + .+++++.+++|+.+.-+.... +..........+.. -+...+
T Consensus 144 ~~~~Y~asKaal~~l~~~~a~e-~----~~~irvn~v~Pg~~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~ 207 (236)
T PRK06483 144 KHIAYAASKAALDNMTLSFAAK-L----APEVKVNSIAPALILFNEGDD--AAYRQKALAKSLLK---------IEPGEE 207 (236)
T ss_pred CCccHHHHHHHHHHHHHHHHHH-H----CCCcEEEEEccCceecCCCCC--HHHHHHHhccCccc---------cCCCHH
Confidence 0257999999999999877542 1 235999999999874322111 11112222211111 133578
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
|+++++..++. .....|+++.+.+|..
T Consensus 208 ~va~~~~~l~~-----------~~~~~G~~i~vdgg~~ 234 (236)
T PRK06483 208 EIIDLVDYLLT-----------SCYVTGRSLPVDGGRH 234 (236)
T ss_pred HHHHHHHHHhc-----------CCCcCCcEEEeCcccc
Confidence 99999988875 2246788888876643
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-17 Score=155.02 Aligned_cols=226 Identities=18% Similarity=0.136 Sum_probs=148.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
|+++||||+|+||.+++++|+++|++ |++++|++...... . .....+.++.+|++|++++.++++ .+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFA-VAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 57999999999999999999999998 99998864321110 1 113357889999999999887764 479
Q ss_pred EEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 81 ~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
+|||+|+..... .+..+.+..+++|+.++..+++++.+. + ..++|++||....++.+.
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------- 146 (254)
T TIGR02415 80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPI------------- 146 (254)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCC-------------
Confidence 999999864322 223445678899999998888777642 3 258999999766433211
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCe----eeCCCCccc
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPF----KIGEPSVKT 227 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~----~~g~g~~~~ 227 (478)
.+.|+.+|...|.+++....+ + ...++++++++|+.+..+..........+ ..+.... .+.......
T Consensus 147 ---~~~Y~~sK~a~~~~~~~l~~~-~---~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 217 (254)
T TIGR02415 147 ---LSAYSSTKFAVRGLTQTAAQE-L---APKGITVNAYCPGIVKTPMWEEIDEETSE--IAGKPIGEGFEEFSSEIALG 217 (254)
T ss_pred ---CcchHHHHHHHHHHHHHHHHH-h---cccCeEEEEEecCcccChhhhhhhhhhhh--cccCchHHHHHHHHhhCCCC
Confidence 267999999999998765432 1 13589999999999976642211110000 0000000 000001122
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.+...+|+++++..++... .....|+.+.+.+|
T Consensus 218 ~~~~~~~~a~~~~~l~~~~---------~~~~~g~~~~~d~g 250 (254)
T TIGR02415 218 RPSEPEDVAGLVSFLASED---------SDYITGQSILVDGG 250 (254)
T ss_pred CCCCHHHHHHHHHhhcccc---------cCCccCcEEEecCC
Confidence 4778899999999888631 12345666666554
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-17 Score=155.79 Aligned_cols=201 Identities=16% Similarity=0.125 Sum_probs=141.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhc------Cc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAAR------GV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~------~~ 79 (478)
+++++++||||+|+||.+++++|+++|++ |++++|+....... .....++.++.+|++|.+++.++++ ++
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999998 99999875421111 0123468899999999998877654 57
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+|+..... .+..+....+++|+.|+.++++++.+. +..++|++||....++..
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------------- 147 (263)
T PRK09072 82 NVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYP-------------- 147 (263)
T ss_pred CEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCC--------------
Confidence 9999999964322 122345677889999999999998652 346799998875532211
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
....|+.+|...+.++.....+ + ...+++++++.|+.+.++...... . . ... ........
T Consensus 148 --~~~~Y~~sK~a~~~~~~~l~~~-~---~~~~i~v~~v~Pg~~~t~~~~~~~----~-----~---~~~--~~~~~~~~ 207 (263)
T PRK09072 148 --GYASYCASKFALRGFSEALRRE-L---ADTGVRVLYLAPRATRTAMNSEAV----Q-----A---LNR--ALGNAMDD 207 (263)
T ss_pred --CccHHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEecCcccccchhhhc----c-----c---ccc--cccCCCCC
Confidence 0256999999988887665432 1 146899999999988665322100 0 0 000 00113567
Q ss_pred HHHHHHHHHHHHh
Q 011770 232 VDNLVLALILASM 244 (478)
Q Consensus 232 V~Dva~a~~~a~~ 244 (478)
++|+|++++.+++
T Consensus 208 ~~~va~~i~~~~~ 220 (263)
T PRK09072 208 PEDVAAAVLQAIE 220 (263)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999987
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=158.13 Aligned_cols=223 Identities=20% Similarity=0.224 Sum_probs=150.0
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
++..+++++++||||+|+||++++++|+++|++ |++.+++....... . .....+.++.+|++|.+++.++++
T Consensus 6 ~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~-Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~ 84 (306)
T PRK07792 6 NTTDLSGKVAVVTGAAAGLGRAEALGLARLGAT-VVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATA 84 (306)
T ss_pred CCcCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345678899999999999999999999999998 99988764322111 0 112457889999999988887765
Q ss_pred ----CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc--------C---CCeEEEEeccceeeCCcc
Q 011770 78 ----GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF--------G---IQRLVYVSTYNVVFGGKE 138 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~--------~---v~r~V~~SS~~v~~g~~~ 138 (478)
++|+|||+|+..... .+..+.+..+++|+.|+.++++++..+ + -.++|++||...+.+..
T Consensus 85 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~- 163 (306)
T PRK07792 85 VGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPV- 163 (306)
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCC-
Confidence 589999999975332 233456778899999999999987532 0 14899999976532211
Q ss_pred ccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCe
Q 011770 139 IVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPF 218 (478)
Q Consensus 139 ~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~ 218 (478)
....|+.+|...+.+++.+..+ + ..+|+++.++.|+. .. .....+. ... ..
T Consensus 164 ---------------~~~~Y~asKaal~~l~~~la~e-~---~~~gI~vn~i~Pg~--~t---~~~~~~~----~~~-~~ 214 (306)
T PRK07792 164 ---------------GQANYGAAKAGITALTLSAARA-L---GRYGVRANAICPRA--RT---AMTADVF----GDA-PD 214 (306)
T ss_pred ---------------CCchHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEECCCC--CC---chhhhhc----ccc-ch
Confidence 0146999999999998766432 1 24789999999962 11 1111110 000 00
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.. ....+.+..+|++.++..++.. ......|+.|.+.+|.
T Consensus 215 ~~---~~~~~~~~pe~va~~v~~L~s~---------~~~~~tG~~~~v~gg~ 254 (306)
T PRK07792 215 VE---AGGIDPLSPEHVVPLVQFLASP---------AAAEVNGQVFIVYGPM 254 (306)
T ss_pred hh---hhccCCCCHHHHHHHHHHHcCc---------cccCCCCCEEEEcCCe
Confidence 00 0122445789999998876642 1224678888887653
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-16 Score=150.53 Aligned_cols=222 Identities=15% Similarity=0.122 Sum_probs=151.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc----ccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL----LINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~----~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+|+++||||+|.||+++++.|.++|++ |++++|+........ .....+.++++|++|++++.++++ ++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGAN-VVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 478999999999999999999999998 999998754221110 112468899999999998887664 57
Q ss_pred CEEEEcccCCCC----chhhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMS----GKEMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~----~~~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|+|||+|+.... ..+..+++..+++|+.|+.++++++.+. + -.++|++||...+.+. +
T Consensus 80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~----------~--- 146 (252)
T PRK07677 80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG----------P--- 146 (252)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC----------C---
Confidence 999999985322 1233445778999999999999999542 2 3589999987531100 0
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-c--HHHHHHHHHcCCCCeeeCCCCccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-H--LPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~--~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
...+|+.||...+.+++....+ +. ..+|+++.+++|+.+.+++... . -+...+.+.+..+. .
T Consensus 147 ---~~~~Y~~sKaa~~~~~~~la~e-~~--~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 211 (252)
T PRK07677 147 ---GVIHSAAAKAGVLAMTRTLAVE-WG--RKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPL---------G 211 (252)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHH-hC--cccCeEEEEEeecccccccccccccCCHHHHHHHhccCCC---------C
Confidence 1256999999999998765432 11 1368999999999998643211 1 12222333322211 1
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 212 ~~~~~~~va~~~~~l~~~---------~~~~~~g~~~~~~gg~ 245 (252)
T PRK07677 212 RLGTPEEIAGLAYFLLSD---------EAAYINGTCITMDGGQ 245 (252)
T ss_pred CCCCHHHHHHHHHHHcCc---------cccccCCCEEEECCCe
Confidence 355678999988776642 1224677888877664
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=152.86 Aligned_cols=226 Identities=13% Similarity=0.090 Sum_probs=149.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c---ccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L---LINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~---~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
+..+++|+++||||+|.||++++++|+++|++ |++.+++....... . .....+.++++|++|+++++++++
T Consensus 3 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (260)
T PRK08416 3 SNEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKI 81 (260)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 34577899999999999999999999999998 98886654321110 0 112357899999999998887765
Q ss_pred -----CcCEEEEcccCCCC------c----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCcc
Q 011770 78 -----GVDCVFHVASYGMS------G----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKE 138 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~------~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~ 138 (478)
++|++||+|+.... . .+..+....+++|+.+...+.+.+.+ .+..++|++||.....+.
T Consensus 82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 159 (260)
T PRK08416 82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYI-- 159 (260)
T ss_pred HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCC--
Confidence 47999999985311 1 11234456778888887766665543 344589999997542110
Q ss_pred ccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCC
Q 011770 139 IVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLV 216 (478)
Q Consensus 139 ~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~ 216 (478)
|. ...|+.||...|.+++.+..+ + ..+|+++.++.|+.+-.+....+ ............+
T Consensus 160 -----------~~---~~~Y~asK~a~~~~~~~la~e-l---~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~ 221 (260)
T PRK08416 160 -----------EN---YAGHGTSKAAVETMVKYAATE-L---GEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSP 221 (260)
T ss_pred -----------CC---cccchhhHHHHHHHHHHHHHH-h---hhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCC
Confidence 11 246999999999999876542 1 14689999999998855421110 0111112222111
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|++.+++.++.. ......|+.+.+.+|.
T Consensus 222 ---------~~r~~~p~~va~~~~~l~~~---------~~~~~~G~~i~vdgg~ 257 (260)
T PRK08416 222 ---------LNRMGQPEDLAGACLFLCSE---------KASWLTGQTIVVDGGT 257 (260)
T ss_pred ---------CCCCCCHHHHHHHHHHHcCh---------hhhcccCcEEEEcCCe
Confidence 12356789999999887752 1224567888776653
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=153.84 Aligned_cols=223 Identities=18% Similarity=0.148 Sum_probs=150.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-ccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
.+++++++||||+|+||++++++|.++|++ |++++|+........ ....++.++++|++|.++++++++ ++
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGAR-VAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 356789999999999999999999999999 999998754211111 113457889999999998887764 57
Q ss_pred CEEEEcccCCCCc-----hhhh----chhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 80 DCVFHVASYGMSG-----KEML----QFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 80 D~ViHlAa~~~~~-----~~~~----~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
|++||+|+..... .+.. ..+..+++|+.++.++++++.+. .-.++|++||...+.+..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 151 (263)
T PRK06200 82 DCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGG---------- 151 (263)
T ss_pred CEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCC----------
Confidence 9999999964211 1111 14566789999999999888753 224799999987642211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----------cHHHHHHHHHcCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----------HLPRIVSLAKLGLV 216 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----------~~~~~i~~~~~g~~ 216 (478)
....|+.||...|.+++....+ + ..++++..+.|+.|..+-... ..+..........
T Consensus 152 ------~~~~Y~~sK~a~~~~~~~la~e-l----~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 219 (263)
T PRK06200 152 ------GGPLYTASKHAVVGLVRQLAYE-L----APKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAIT- 219 (263)
T ss_pred ------CCchhHHHHHHHHHHHHHHHHH-H----hcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCC-
Confidence 0256999999999999876542 1 234999999999997653211 0011111111111
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...-+...+|+++++..++.... .....|+.+.+.+|
T Consensus 220 --------p~~r~~~~~eva~~~~fl~s~~~--------~~~itG~~i~vdgG 256 (263)
T PRK06200 220 --------PLQFAPQPEDHTGPYVLLASRRN--------SRALTGVVINADGG 256 (263)
T ss_pred --------CCCCCCCHHHHhhhhhheecccc--------cCcccceEEEEcCc
Confidence 12245678999999988764210 22457888888665
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-16 Score=150.48 Aligned_cols=202 Identities=20% Similarity=0.173 Sum_probs=140.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----------cccCCCeEEEEecCCCHHHHHHHh
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----------LLINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----------~~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
.+++++++||||+|+||++++++|.++|++ |++++|+.+..... .....++.++++|++|.+++.+++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGAN-IVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 456789999999999999999999999998 99999875421100 011245788999999999988876
Q ss_pred c-------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccC
Q 011770 77 R-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~ 141 (478)
+ ++|+|||+|+...... +..+.+..+++|+.++.++++++... +-.++|++||.... .
T Consensus 82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~---~---- 154 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL---D---- 154 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc---c----
Confidence 5 6899999999643222 22345677889999999999999753 23478888875321 0
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCc-eeCCCCCCcHHHHHHHHHcCCCCeee
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA-IYGPGEERHLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~-vyGp~~~~~~~~~i~~~~~g~~~~~~ 220 (478)
.. +.| ..+.|+.||.+.|.+++.+..+ + ..++++++.+.|+. +-.+. .+....+.
T Consensus 155 ---~~-~~~---~~~~Y~~sK~a~~~~~~~la~e-l---~~~~I~v~~i~Pg~~i~t~~--------~~~~~~~~----- 210 (273)
T PRK08278 155 ---PK-WFA---PHTAYTMAKYGMSLCTLGLAEE-F---RDDGIAVNALWPRTTIATAA--------VRNLLGGD----- 210 (273)
T ss_pred ---cc-ccC---CcchhHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEeCCCccccHH--------HHhccccc-----
Confidence 00 001 1267999999999999877542 1 24689999999984 32221 11111111
Q ss_pred CCCCccccceeHHHHHHHHHHHHh
Q 011770 221 GEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.....+.-.+|++++++.++.
T Consensus 211 ---~~~~~~~~p~~va~~~~~l~~ 231 (273)
T PRK08278 211 ---EAMRRSRTPEIMADAAYEILS 231 (273)
T ss_pred ---ccccccCCHHHHHHHHHHHhc
Confidence 112235678999999998876
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.9e-17 Score=153.64 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=122.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-----------Cc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-----------GV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-----------~~ 79 (478)
||+++||||+|+||++++++|+++|++ |++++|+..... ......++.++++|++|.++++++++ .+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~-v~~~~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIA-VLGVARSRHPSL-AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASR 78 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCE-EEEEecCcchhh-hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCc
Confidence 458999999999999999999999998 999998754321 11223468889999999998887432 46
Q ss_pred CEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|++||+|+..... .+..+....+++|+.|+..+.+.+.+ .+.+++|++||...+.+ ..+
T Consensus 79 ~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------~~~ 146 (243)
T PRK07023 79 VLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNA------------YAG 146 (243)
T ss_pred eEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCC------------CCC
Confidence 8999999864321 12234567789999997777666654 34569999999875311 111
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
...|+.+|...|.+++.+..+ ...++++.+++|+.+-.+
T Consensus 147 ----~~~Y~~sK~a~~~~~~~~~~~-----~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 147 ----WSVYCATKAALDHHARAVALD-----ANRALRIVSLAPGVVDTG 185 (243)
T ss_pred ----chHHHHHHHHHHHHHHHHHhc-----CCCCcEEEEecCCccccH
Confidence 267999999999999877643 146899999999988444
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=152.33 Aligned_cols=218 Identities=12% Similarity=0.090 Sum_probs=143.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhcCc---------
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAARGV--------- 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~~~--------- 79 (478)
||+++||||+|+||++++++|.++|++ |++++|+....... .....+++++++|++|.++++++++++
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTH-VISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQEDNV 79 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCE-EEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcccC
Confidence 368999999999999999999999998 99999876321111 112346888999999999988877532
Q ss_pred --CEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHH----c-CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 80 --DCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLE----F-GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 80 --D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~----~-~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
+++||+||.... ..+..+....+++|+.++..+++.+.+ . +.+++|++||..+. .+
T Consensus 80 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~ 147 (251)
T PRK06924 80 SSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAK------------NP 147 (251)
T ss_pred CceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhc------------CC
Confidence 278999986422 123345667788999997766665544 2 34589999997652 11
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-------cHHHHHHHHHcCCCCeee
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-------HLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-------~~~~~i~~~~~g~~~~~~ 220 (478)
..+ ...|+.+|...|.+++.+..+.-. ...++++..++|+.+-.+.... ... ..+..... .
T Consensus 148 ~~~----~~~Y~~sKaa~~~~~~~la~e~~~--~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~-~~~~~~~~-----~ 215 (251)
T PRK06924 148 YFG----WSAYCSSKAGLDMFTQTVATEQEE--EEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFT-NLDRFITL-----K 215 (251)
T ss_pred CCC----cHHHhHHHHHHHHHHHHHHHHhhh--cCCCeEEEEecCCccccHhHHHHHhcCcccch-HHHHHHHH-----h
Confidence 111 267999999999999876532100 1357999999999886553110 000 00011100 0
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEec
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVS 267 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~ 267 (478)
....+...+|+|++++.++.. .....|+.+.+.
T Consensus 216 ----~~~~~~~~~dva~~~~~l~~~----------~~~~~G~~~~v~ 248 (251)
T PRK06924 216 ----EEGKLLSPEYVAKALRNLLET----------EDFPNGEVIDID 248 (251)
T ss_pred ----hcCCcCCHHHHHHHHHHHHhc----------ccCCCCCEeehh
Confidence 011357889999999988862 124557666554
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=155.75 Aligned_cols=207 Identities=18% Similarity=0.184 Sum_probs=144.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
|+.+++++|+||||+|.||++++++|.++|++ |++++|+....... . .....+.++.+|++|.++++++++
T Consensus 2 ~~~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 2 MGPLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CcCCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 34467789999999999999999999999998 99999875422110 0 112457788999999999888763
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+|+...... ..++.+..+++|+.|+.++.+++. +.+..++|++||...+.+.
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~---------- 150 (330)
T PRK06139 81 FGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQ---------- 150 (330)
T ss_pred hcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCC----------
Confidence 5899999999653322 223456788999999999888765 3445689999997653211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
|. ...|+.||...+.+......+ +.+ ..+++++.+.|+.+.+|....... . .+.. ....
T Consensus 151 p~------~~~Y~asKaal~~~~~sL~~E-l~~--~~gI~V~~v~Pg~v~T~~~~~~~~-----~-~~~~------~~~~ 209 (330)
T PRK06139 151 PY------AAAYSASKFGLRGFSEALRGE-LAD--HPDIHVCDVYPAFMDTPGFRHGAN-----Y-TGRR------LTPP 209 (330)
T ss_pred CC------chhHHHHHHHHHHHHHHHHHH-hCC--CCCeEEEEEecCCccCcccccccc-----c-cccc------ccCC
Confidence 11 257999999877666554321 111 358999999999998885422100 0 0100 0111
Q ss_pred ccceeHHHHHHHHHHHHh
Q 011770 227 TDWIYVDNLVLALILASM 244 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~ 244 (478)
......+|+|++++.+++
T Consensus 210 ~~~~~pe~vA~~il~~~~ 227 (330)
T PRK06139 210 PPVYDPRRVAKAVVRLAD 227 (330)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 235789999999999886
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=147.87 Aligned_cols=223 Identities=16% Similarity=0.182 Sum_probs=147.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++++++||||+|.||++++++|.++|+. |++..|+....... . .....+.++.+|++|.+++.++++
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999998 88887754321110 0 112457789999999998887664
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHH----HHHcC-CCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEA----CLEFG-IQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~a----a~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+|+...... ...+.+..+++|+.++.+++++ +.+.+ -.++|++||...+.
T Consensus 83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~------------ 150 (261)
T PRK08936 83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI------------ 150 (261)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC------------
Confidence 5799999999643322 2234566789998888765554 45544 35899999964321
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~ 224 (478)
|..+ ...|+.+|.+.+.+.+..... + ...++++++++|+.+..+.....+ +..........+
T Consensus 151 ~~~~----~~~Y~~sKaa~~~~~~~la~e-~---~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~-------- 214 (261)
T PRK08936 151 PWPL----FVHYAASKGGVKLMTETLAME-Y---APKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIP-------- 214 (261)
T ss_pred CCCC----CcccHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCC--------
Confidence 1111 257999998888777655321 1 146899999999999888533211 222222221111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+...+|+++++..++.. ......|+.+.+.+|
T Consensus 215 -~~~~~~~~~va~~~~~l~s~---------~~~~~~G~~i~~d~g 249 (261)
T PRK08936 215 -MGYIGKPEEIAAVAAWLASS---------EASYVTGITLFADGG 249 (261)
T ss_pred -CCCCcCHHHHHHHHHHHcCc---------ccCCccCcEEEECCC
Confidence 12356688999998887652 122456766666554
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-16 Score=148.25 Aligned_cols=200 Identities=17% Similarity=0.177 Sum_probs=137.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c---ccCCCeEEEEecCCC--HHHHHHHh----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L---LINHGVHCIQGDVVS--KIDVEKAA---- 76 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~---~~~~~v~~v~gDl~d--~~~l~~~l---- 76 (478)
.+++++++||||+|+||++++++|+++|++ |++++|+....... . .....+.++.+|++| .+++.+++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGAT-VILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 366789999999999999999999999998 99999876422110 0 012346678899975 33444433
Q ss_pred ----cCcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCC
Q 011770 77 ----RGVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 77 ----~~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
.++|+|||+|+.... ..+..+....+++|+.|+.++++++.+. +..++|++||.....
T Consensus 82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~--------- 152 (239)
T PRK08703 82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGET--------- 152 (239)
T ss_pred HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEecccccc---------
Confidence 457999999995321 1123345567899999999998888653 456899999864311
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g 223 (478)
|. | ....|+.||+..|.+++.++.+ +.. ..++++++++|+.|++|...+.. .+
T Consensus 153 ---~~-~---~~~~Y~~sKaa~~~~~~~la~e-~~~--~~~i~v~~v~pG~v~t~~~~~~~--------~~--------- 205 (239)
T PRK08703 153 ---PK-A---YWGGFGASKAALNYLCKVAADE-WER--FGNLRANVLVPGPINSPQRIKSH--------PG--------- 205 (239)
T ss_pred ---CC-C---CccchHHhHHHHHHHHHHHHHH-hcc--CCCeEEEEEecCcccCccccccC--------CC---------
Confidence 10 1 1256999999999998776532 111 23699999999999998532110 01
Q ss_pred CccccceeHHHHHHHHHHHHh
Q 011770 224 SVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.....+...+|++.++..++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (239)
T PRK08703 206 EAKSERKSYGDVLPAFVWWAS 226 (239)
T ss_pred CCccccCCHHHHHHHHHHHhC
Confidence 111235678999999988875
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=148.67 Aligned_cols=200 Identities=14% Similarity=0.061 Sum_probs=140.2
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
|+||||+|+||.+++++|.++|++ |++++++.+...... ....++.++++|++|.+++.++++ .+|+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~ 79 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFE-ICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG 79 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 689999999999999999999998 999887654221111 123468899999999998877665 4699
Q ss_pred EEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH-----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 82 VFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL-----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 82 ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~-----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+||+|+..... .+..+++..+++|+.++.++++++. +.+..++|++||...+++.+.
T Consensus 80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~-------------- 145 (239)
T TIGR01831 80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRG-------------- 145 (239)
T ss_pred EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCC--------------
Confidence 99999864322 2344567789999999999998763 234468999999876443211
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
...|+.+|...+.+.+....+. ...|++++.++|+.+.++......+. ........+. ..+...
T Consensus 146 --~~~Y~~sK~a~~~~~~~la~e~----~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~---------~~~~~~ 209 (239)
T TIGR01831 146 --QVNYSAAKAGLIGATKALAVEL----AKRKITVNCIAPGLIDTEMLAEVEHD-LDEALKTVPM---------NRMGQP 209 (239)
T ss_pred --CcchHHHHHHHHHHHHHHHHHH----hHhCeEEEEEEEccCccccchhhhHH-HHHHHhcCCC---------CCCCCH
Confidence 2569999999888876654321 13689999999999988754332221 1112211111 123456
Q ss_pred HHHHHHHHHHHh
Q 011770 233 DNLVLALILASM 244 (478)
Q Consensus 233 ~Dva~a~~~a~~ 244 (478)
+|+++++..++.
T Consensus 210 ~~va~~~~~l~~ 221 (239)
T TIGR01831 210 AEVASLAGFLMS 221 (239)
T ss_pred HHHHHHHHHHcC
Confidence 899999998875
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-16 Score=148.32 Aligned_cols=199 Identities=18% Similarity=0.143 Sum_probs=137.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCC--CHHHHHHHh----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVV--SKIDVEKAA---- 76 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~--d~~~l~~~l---- 76 (478)
.+++++|+||||+|+||.+++++|+++|++ |++++|+....... ......+.++.+|++ +.+++.+++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGAT-VILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 457889999999999999999999999998 99999875421110 011235677888886 555544433
Q ss_pred ---cCcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCC
Q 011770 77 ---RGVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 77 ---~~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
..+|+|||+|+.... ..........+++|+.|+.++++++. +.+.+++|++||.....+..
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~------- 160 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRA------- 160 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCC-------
Confidence 368999999986322 12234556788999999988888775 45678999999976532211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
...+|+.||...|.++..+... + ...++++++++|+.+-++...... ...
T Consensus 161 ---------~~~~Y~~sK~a~~~~~~~~~~~-~---~~~~i~~~~v~pg~v~t~~~~~~~--------~~~--------- 210 (247)
T PRK08945 161 ---------NWGAYAVSKFATEGMMQVLADE-Y---QGTNLRVNCINPGGTRTAMRASAF--------PGE--------- 210 (247)
T ss_pred ---------CCcccHHHHHHHHHHHHHHHHH-h---cccCEEEEEEecCCccCcchhhhc--------Ccc---------
Confidence 0246999999999998766432 1 246899999999988665221100 000
Q ss_pred ccccceeHHHHHHHHHHHHh
Q 011770 225 VKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~ 244 (478)
....+.-.+|+++.+..++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~ 230 (247)
T PRK08945 211 DPQKLKTPEDIMPLYLYLMG 230 (247)
T ss_pred cccCCCCHHHHHHHHHHHhC
Confidence 01135677999999998765
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=143.88 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=138.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh---c--CcCEEEEc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA---R--GVDCVFHV 85 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l---~--~~D~ViHl 85 (478)
|++++||||+|+||++++++|+++|++ |++++|+.... ......+++++++|++|.+++++++ . ++|+|||+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~-v~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ 77 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWR-VIATARDAAAL--AALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYV 77 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCE-EEEEECCHHHH--HHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEEC
Confidence 468999999999999999999999998 99998875422 1122235678999999999988864 2 48999999
Q ss_pred ccCCCCc------hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 86 ASYGMSG------KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 86 Aa~~~~~------~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
|+..... .+..+++..+++|+.++.++++++.+. +-.++|++||...+++..+ ..+ ..
T Consensus 78 ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------~~~----~~ 144 (222)
T PRK06953 78 AGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDAT---------GTT----GW 144 (222)
T ss_pred CCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccccccc---------CCC----cc
Confidence 9864211 134456788999999999999999752 2247999998765443211 001 13
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHH
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLV 236 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva 236 (478)
.|+.+|...|.+++.+..+ ..+++++.++|+.+..+... + ...+..+|.+
T Consensus 145 ~Y~~sK~a~~~~~~~~~~~------~~~i~v~~v~Pg~i~t~~~~--------------------~----~~~~~~~~~~ 194 (222)
T PRK06953 145 LYRASKAALNDALRAASLQ------ARHATCIALHPGWVRTDMGG--------------------A----QAALDPAQSV 194 (222)
T ss_pred ccHHhHHHHHHHHHHHhhh------ccCcEEEEECCCeeecCCCC--------------------C----CCCCCHHHHH
Confidence 5999999999999877642 35789999999999776321 0 1134678888
Q ss_pred HHHHHHHhc
Q 011770 237 LALILASMG 245 (478)
Q Consensus 237 ~a~~~a~~~ 245 (478)
+.+..++..
T Consensus 195 ~~~~~~~~~ 203 (222)
T PRK06953 195 AGMRRVIAQ 203 (222)
T ss_pred HHHHHHHHh
Confidence 888887764
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=157.38 Aligned_cols=186 Identities=17% Similarity=0.076 Sum_probs=133.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c---ccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L---LINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~---~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
..+++++++||||+|+||.+++++|+++|++ |++.+|+....... . .....+.++++|++|.++++++++
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~-Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAE-VILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999999998 99998875421110 0 012358899999999999887765
Q ss_pred ----CcCEEEEcccCCCCch---hhhchhhhhHhhhHHHHHHHHHHHH---cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK---EMLQFGRVDEVNINGTCHVIEACLE---FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~---~~~~~~~~~~vNv~gt~nll~aa~~---~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
.+|++||+||...... +....+..+++|+.|+..+.+.+.. .+..|+|++||...+++.......+++.+
T Consensus 89 ~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~~~ 168 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWERS 168 (313)
T ss_pred HhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccccc
Confidence 4799999999753321 2345567789999998888877763 23458999999876444322222333333
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
+.+ ...|+.||...+.+.++...+.-. ...++.+.++.||.|-.+-
T Consensus 169 ~~~----~~~Y~~SK~a~~~~~~~la~~~~~--~~~gI~v~~v~PG~v~T~~ 214 (313)
T PRK05854 169 YAG----MRAYSQSKIAVGLFALELDRRSRA--AGWGITSNLAHPGVAPTNL 214 (313)
T ss_pred Ccc----hhhhHHHHHHHHHHHHHHHHHhhc--CCCCeEEEEEecceeccCc
Confidence 333 367999999999998776431000 1368999999999997653
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-16 Score=147.77 Aligned_cols=218 Identities=18% Similarity=0.156 Sum_probs=147.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++|+||||+|+||+++++.|.++|++ |++++|++...... .....+++++++|++|.++++++++ +
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQ-VCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999998 99999875421110 0112357889999999998877664 4
Q ss_pred cCEEEEcccCCCCc--hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 79 VDCVFHVASYGMSG--KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 79 ~D~ViHlAa~~~~~--~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
+|.+||+++..... ....+.+..+++|+.++.++++.+.+. .-.++|++||....++. ..+
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~-----------~~~---- 146 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKA-----------SPD---- 146 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccC-----------CCC----
Confidence 69999999853211 122344566789999998888887764 12479999987542211 001
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
...|+.+|...+.+++..... + ..++++++++||+.++++..... ..... ...+ ..++.-+|
T Consensus 147 ~~~Y~~sK~~~~~~~~~~~~~-~---~~~gi~v~~i~pg~v~~~~~~~~---~~~~~------~~~~-----~~~~~~~~ 208 (238)
T PRK05786 147 QLSYAVAKAGLAKAVEILASE-L---LGRGIRVNGIAPTTISGDFEPER---NWKKL------RKLG-----DDMAPPED 208 (238)
T ss_pred chHHHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEecCccCCCCCchh---hhhhh------cccc-----CCCCCHHH
Confidence 256999999999887765431 1 14689999999999999843210 00100 0001 12456789
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
++++++.++.. ......|+.+.+.++
T Consensus 209 va~~~~~~~~~---------~~~~~~g~~~~~~~~ 234 (238)
T PRK05786 209 FAKVIIWLLTD---------EADWVDGVVIPVDGG 234 (238)
T ss_pred HHHHHHHHhcc---------cccCccCCEEEECCc
Confidence 99999988752 112346777777544
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-16 Score=148.46 Aligned_cols=194 Identities=15% Similarity=0.129 Sum_probs=134.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCccc----ccc--cCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWS----HLL--INHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~----~~~--~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
..++|+||||+|.||++++++|+++| ++ |++++|+++.... ... ...+++++++|++|.+++++.++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~-V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPAR-VVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCe-EEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 35789999999999999999999995 77 9999987653111 011 12368899999999888665543
Q ss_pred -CcCEEEEcccCCCCchh-hhc---hhhhhHhhhHHHHH----HHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGKE-MLQ---FGRVDEVNINGTCH----VIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~~-~~~---~~~~~~vNv~gt~n----ll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||++|....... ..+ ..+.+++|+.++.+ +++.+++.+..++|++||...+.+ .
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~----------~-- 153 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERV----------R-- 153 (253)
T ss_pred CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCC----------C--
Confidence 68999999986432111 111 12458999998876 566777777789999999754211 0
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
| ....|+.||+..+.+.+.... ++ ..+++++++++|+.+..+.... .... ..
T Consensus 154 -~---~~~~Y~~sKaa~~~~~~~l~~-el---~~~~i~v~~v~Pg~v~t~~~~~----------~~~~----------~~ 205 (253)
T PRK07904 154 -R---SNFVYGSTKAGLDGFYLGLGE-AL---REYGVRVLVVRPGQVRTRMSAH----------AKEA----------PL 205 (253)
T ss_pred -C---CCcchHHHHHHHHHHHHHHHH-HH---hhcCCEEEEEeeCceecchhcc----------CCCC----------CC
Confidence 1 125699999999877655432 11 1478999999999998752211 0000 11
Q ss_pred ceeHHHHHHHHHHHHh
Q 011770 229 WIYVDNLVLALILASM 244 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~ 244 (478)
.+..+|+|+.++.+++
T Consensus 206 ~~~~~~~A~~i~~~~~ 221 (253)
T PRK07904 206 TVDKEDVAKLAVTAVA 221 (253)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3578999999999887
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=146.81 Aligned_cols=221 Identities=19% Similarity=0.120 Sum_probs=151.4
Q ss_pred CCCCeEEEEcCCC-hhHHHHHHHHHHcCCceEEEEecCCCCccccc--c----cCCCeEEEEecCCCHHHHHHHhc----
Q 011770 9 IEGKTFLVTGGLG-HVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--L----INHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 9 ~~~~~ILVTGatG-fIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~----~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
+++++++||||+| -||+++++.|.++|++ |++.+|+........ . ....+.++++|++|.++++++++
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578999999998 5999999999999998 999987654211110 0 11357889999999998887765
Q ss_pred ---CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+|+..... .+..+....+++|+.++.++++++.+. + -.++|++||.....+.
T Consensus 94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~--------- 164 (262)
T PRK07831 94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQ--------- 164 (262)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC---------
Confidence 579999999964321 122355677889999999988887652 2 3578888886542110
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-HHHHHHHHHcCCCCeeeCCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-LPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-~~~~i~~~~~g~~~~~~g~g~ 224 (478)
+ ....|+.+|...|.+++.+..+ + ..+++++++++|+.++.|..... .+.....+....+.
T Consensus 165 ----~---~~~~Y~~sKaal~~~~~~la~e-~---~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~~------- 226 (262)
T PRK07831 165 ----H---GQAHYAAAKAGVMALTRCSALE-A---AEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREAF------- 226 (262)
T ss_pred ----C---CCcchHHHHHHHHHHHHHHHHH-h---CccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCCC-------
Confidence 0 1257999999999999876532 1 24789999999999998853321 12333333332221
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSD 268 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~ 268 (478)
.-+.-.+|++++++.++.. ......|+.+.+..
T Consensus 227 --~r~~~p~~va~~~~~l~s~---------~~~~itG~~i~v~~ 259 (262)
T PRK07831 227 --GRAAEPWEVANVIAFLASD---------YSSYLTGEVVSVSS 259 (262)
T ss_pred --CCCcCHHHHHHHHHHHcCc---------hhcCcCCceEEeCC
Confidence 1245578999999887752 12245677776654
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=146.58 Aligned_cols=226 Identities=19% Similarity=0.114 Sum_probs=150.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--cc--CCCeEEEEecCCCHHHHHHHhc----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LI--NHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~--~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
.+++++++||||+|+||.+++++|.++|++ |++++|+....... . .. ...+.++.+|++|.+++.++++
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999998 99999875432110 0 01 1357789999999998877654
Q ss_pred ---CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+|+..... .+..+....+++|+.++.++.+++.. .+..++|++||.....+.
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 153 (265)
T PRK07062 84 RFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPE---------- 153 (265)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCC----------
Confidence 579999999964321 12334567788998887777766543 445699999997653111
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH----------HHHHHHHcCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP----------RIVSLAKLGLV 216 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~----------~~i~~~~~g~~ 216 (478)
| ....|+.+|...+.+++....+ + ...|+++++++|+.|-.+.....+. ...+......
T Consensus 154 ---~---~~~~y~asKaal~~~~~~la~e-~---~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 222 (265)
T PRK07062 154 ---P---HMVATSAARAGLLNLVKSLATE-L---APKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKK- 222 (265)
T ss_pred ---C---CchHhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcC-
Confidence 1 1256999999998888765432 1 1468999999999997764221110 1111110000
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
......+...+|+++++..++.. ......|+++.+.+|.
T Consensus 223 ------~~p~~r~~~p~~va~~~~~L~s~---------~~~~~tG~~i~vdgg~ 261 (265)
T PRK07062 223 ------GIPLGRLGRPDEAARALFFLASP---------LSSYTTGSHIDVSGGF 261 (265)
T ss_pred ------CCCcCCCCCHHHHHHHHHHHhCc---------hhcccccceEEEcCce
Confidence 00112356678999999887652 1224678888887653
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=152.69 Aligned_cols=211 Identities=20% Similarity=0.138 Sum_probs=145.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c-ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L-LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~-~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+.++++++++||||+|.||.+++++|.++|++ |++++|+....... . .....+..+.+|++|.++++++++
T Consensus 4 ~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 4 MTSLAGKVVVVTGAARGIGAELARRLHARGAK-LALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998 99999875421110 0 112345667799999998877664
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++... +..++|++||...+.+..
T Consensus 83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 151 (296)
T PRK05872 83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAP----------- 151 (296)
T ss_pred cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCC-----------
Confidence 579999999964322 123345677899999999999998653 235899999987632211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH--HHHHHHHcCCCCeeeCCCCcc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP--RIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~--~~i~~~~~g~~~~~~g~g~~~ 226 (478)
....|+.||...|.+++....+ + ...|+.+.++.|+.+..+....... .....+...... ..
T Consensus 152 -----~~~~Y~asKaal~~~~~~l~~e-~---~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~-------p~ 215 (296)
T PRK05872 152 -----GMAAYCASKAGVEAFANALRLE-V---AHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPW-------PL 215 (296)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHH-H---HHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCC-------cc
Confidence 1257999999999998765421 1 1468999999999997764221111 111112111110 12
Q ss_pred ccceeHHHHHHHHHHHHh
Q 011770 227 TDWIYVDNLVLALILASM 244 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~ 244 (478)
..++..+|++++++.++.
T Consensus 216 ~~~~~~~~va~~i~~~~~ 233 (296)
T PRK05872 216 RRTTSVEKCAAAFVDGIE 233 (296)
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 245679999999999886
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=150.61 Aligned_cols=169 Identities=21% Similarity=0.208 Sum_probs=124.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-ccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
+++++++||||+|+||++++++|+++|++ |++++|+........ .....+.++++|++|.+++.++++ ++|
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 81 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGAR-VAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKID 81 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence 55789999999999999999999999998 999998754211111 112357889999999988877664 579
Q ss_pred EEEEcccCCCCc-h----hh----hchhhhhHhhhHHHHHHHHHHHHcC---CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 81 CVFHVASYGMSG-K----EM----LQFGRVDEVNINGTCHVIEACLEFG---IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 81 ~ViHlAa~~~~~-~----~~----~~~~~~~~vNv~gt~nll~aa~~~~---v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++||+||..... . .. .+.+..+++|+.++.++++++.+.- -.++|++||...+++..
T Consensus 82 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~----------- 150 (262)
T TIGR03325 82 CLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNG----------- 150 (262)
T ss_pred EEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCC-----------
Confidence 999999863211 1 11 2356788999999999999997642 24799998876532211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
....|+.||...|.+++.+..+. .+.+++..+.|+.+..+-
T Consensus 151 -----~~~~Y~~sKaa~~~l~~~la~e~-----~~~irvn~i~PG~i~t~~ 191 (262)
T TIGR03325 151 -----GGPLYTAAKHAVVGLVKELAFEL-----APYVRVNGVAPGGMSSDL 191 (262)
T ss_pred -----CCchhHHHHHHHHHHHHHHHHhh-----ccCeEEEEEecCCCcCCC
Confidence 01469999999999998776431 223999999999997763
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=162.37 Aligned_cols=222 Identities=16% Similarity=0.171 Sum_probs=155.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-ccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
.+|+++||||+|.||.+++++|.++|++ |++++|+........ .....+..+.+|++|++++.++++ .+|+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 346 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDR-LLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV 346 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5789999999999999999999999998 999998654211111 112356778999999999888775 4799
Q ss_pred EEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 82 VFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 82 ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
+||+||.... ..+..+.+..+++|+.|+.++.+++... +-.++|++||.+.+.+.. +
T Consensus 347 li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------~---- 410 (520)
T PRK06484 347 LVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALP------------P---- 410 (520)
T ss_pred EEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCC------------C----
Confidence 9999996421 1123456778899999999999998874 235899999987632211 1
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH---HHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL---PRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~---~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||+..+.+++....+ + ...|++++++.|+.|.++...... ......+.+..+ ...+..
T Consensus 411 ~~~Y~asKaal~~l~~~la~e-~---~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 477 (520)
T PRK06484 411 RNAYCASKAAVTMLSRSLACE-W---APAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIP---------LGRLGD 477 (520)
T ss_pred CchhHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCC---------CCCCcC
Confidence 257999999999999876532 1 246899999999999887432111 111112222111 112467
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+|++++++.++.. ......|+.+.+.+|.
T Consensus 478 ~~dia~~~~~l~s~---------~~~~~~G~~i~vdgg~ 507 (520)
T PRK06484 478 PEEVAEAIAFLASP---------AASYVNGATLTVDGGW 507 (520)
T ss_pred HHHHHHHHHHHhCc---------cccCccCcEEEECCCc
Confidence 89999999887752 1234678888887653
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=140.73 Aligned_cols=205 Identities=16% Similarity=0.159 Sum_probs=146.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccC--CCeEEEEecCCCHHHHHHHhc-------C
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLIN--HGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~--~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
..++|.++|||||+-||.+.++.|.+.|++ |++..|+...-....... ..+.....|++|.++++++++ +
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~-vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAK-VVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCe-EEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 456789999999999999999999999999 999999876322111111 357889999999988766654 5
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|++||.||.....+ ...+++..+++|+.|..+...+... .+-.++|.+||++.-+. |..
T Consensus 82 iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~------------y~~ 149 (246)
T COG4221 82 IDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYP------------YPG 149 (246)
T ss_pred ccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccccc------------CCC
Confidence 899999999654322 3457789999999999998887654 44558999999874211 111
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cH--HHHHHHHHcCCCCeeeCCCCcc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HL--PRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~--~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
.+.|+.||+..-++.+....+. ...+++++.+-|+.+-...... +- ..-..... ..
T Consensus 150 ----~~vY~ATK~aV~~fs~~LR~e~----~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y------------~~ 209 (246)
T COG4221 150 ----GAVYGATKAAVRAFSLGLRQEL----AGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVY------------KG 209 (246)
T ss_pred ----CccchhhHHHHHHHHHHHHHHh----cCCCeeEEEecCceecceecccccCCchhhhHHHHh------------cc
Confidence 2679999999988876654321 2579999999999884432110 00 00001110 12
Q ss_pred ccceeHHHHHHHHHHHHhc
Q 011770 227 TDWIYVDNLVLALILASMG 245 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~ 245 (478)
...+.-+|+|+++..+++.
T Consensus 210 ~~~l~p~dIA~~V~~~~~~ 228 (246)
T COG4221 210 GTALTPEDIAEAVLFAATQ 228 (246)
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 3567889999999999983
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=149.74 Aligned_cols=222 Identities=16% Similarity=0.160 Sum_probs=148.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC--------Cccc---cc--ccCCCeEEEEecCCCHHHHHHH
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN--------SPWS---HL--LINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~--------~~~~---~~--~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
+++++++||||++.||.+++++|.+.|++ |++++++.+ .... .. .....+.++.+|++|.+++.++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 56789999999999999999999999998 999887641 1000 00 1123467889999999888776
Q ss_pred hc-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C------CCeEEEEeccceee
Q 011770 76 AR-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G------IQRLVYVSTYNVVF 134 (478)
Q Consensus 76 l~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~------v~r~V~~SS~~v~~ 134 (478)
++ ++|++||+|+..... ....+.+..+++|+.|+.++.+++... + -.++|++||.+...
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 162 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ 162 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence 64 579999999964321 233456788999999999998887532 1 14899999976532
Q ss_pred CCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcC
Q 011770 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLG 214 (478)
Q Consensus 135 g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g 214 (478)
+.. ....|+.||...+.+++....+ + ...|+++..+.|+ +..+. ...........
T Consensus 163 ~~~----------------~~~~Y~asKaal~~l~~~la~e-l---~~~gIrVn~v~Pg-~~T~~----~~~~~~~~~~~ 217 (286)
T PRK07791 163 GSV----------------GQGNYSAAKAGIAALTLVAAAE-L---GRYGVTVNAIAPA-ARTRM----TETVFAEMMAK 217 (286)
T ss_pred CCC----------------CchhhHHHHHHHHHHHHHHHHH-H---HHhCeEEEEECCC-CCCCc----chhhHHHHHhc
Confidence 211 0257999999999988765431 1 1368999999997 42221 11111111111
Q ss_pred CCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 215 LVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 215 ~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
. +.....+...+|++++++.++.. ......|+.+.+.+|...
T Consensus 218 ~-------~~~~~~~~~pedva~~~~~L~s~---------~~~~itG~~i~vdgG~~~ 259 (286)
T PRK07791 218 P-------EEGEFDAMAPENVSPLVVWLGSA---------ESRDVTGKVFEVEGGKIS 259 (286)
T ss_pred C-------cccccCCCCHHHHHHHHHHHhCc---------hhcCCCCcEEEEcCCceE
Confidence 0 01112345789999999887652 122467888887766543
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-15 Score=142.50 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=151.6
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCccc-ccccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 9 IEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSPWS-HLLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 9 ~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-~~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++|+++||||+ +-||.+++++|+++|++ |++.+|+...... .......+.++++|++|.++++++++ .
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGK 83 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 567999999999 79999999999999998 9999876321100 11123457889999999998887654 4
Q ss_pred cCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 79 VDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 79 ~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
+|++||+|+.... ..+..+.+..+++|+.++..+.+++.+.- -.++|++||.....+
T Consensus 84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~------------- 150 (252)
T PRK06079 84 IDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERA------------- 150 (252)
T ss_pred CCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcccc-------------
Confidence 7999999996431 12334567788999999999988887641 247999998653110
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCcc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
.|. ...|+.||...+.+++....+ + ..+|+++.++.|+.|-.+..... -+...+......+ .
T Consensus 151 ~~~---~~~Y~asKaal~~l~~~la~e-l---~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p---------~ 214 (252)
T PRK06079 151 IPN---YNVMGIAKAALESSVRYLARD-L---GKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTV---------D 214 (252)
T ss_pred CCc---chhhHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCc---------c
Confidence 011 257999999999999776542 1 24789999999999977632211 1122222222111 1
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
..+...+|+++++..++.. ......|++..+.+|
T Consensus 215 ~r~~~pedva~~~~~l~s~---------~~~~itG~~i~vdgg 248 (252)
T PRK06079 215 GVGVTIEEVGNTAAFLLSD---------LSTGVTGDIIYVDKG 248 (252)
T ss_pred cCCCCHHHHHHHHHHHhCc---------ccccccccEEEeCCc
Confidence 2356679999999888752 122456777777655
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-15 Score=142.83 Aligned_cols=224 Identities=14% Similarity=0.051 Sum_probs=151.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--c---cCCCeEEEEecCCCHHHHHHHhc---Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--L---INHGVHCIQGDVVSKIDVEKAAR---GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~---~~~~v~~v~gDl~d~~~l~~~l~---~~ 79 (478)
.+++++++||||+|.||.++++.|.++|++ |++++|+........ . ...++.++.+|++|.+++.++++ ++
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCH-LHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 356789999999999999999999999998 999998754221100 1 12357889999999999888765 58
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|++||+|+..... ....+.+..+++|+.++.++.+++. +.+-.++|++||.... . +..+
T Consensus 83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~---~---------~~~~- 149 (259)
T PRK06125 83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE---N---------PDAD- 149 (259)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc---C---------CCCC-
Confidence 9999999864321 1234557778999999999888874 3334589999886431 0 0001
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH----------HHHHHHHcCCCCeeeC
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP----------RIVSLAKLGLVPFKIG 221 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~----------~~i~~~~~g~~~~~~g 221 (478)
...|+.+|...+.+++....+ + ...|++++.+.|+.+..+....... ...+.+...
T Consensus 150 ---~~~y~ask~al~~~~~~la~e-~---~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 215 (259)
T PRK06125 150 ---YICGSAGNAALMAFTRALGGK-S---LDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAG------- 215 (259)
T ss_pred ---chHhHHHHHHHHHHHHHHHHH-h---CccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhcc-------
Confidence 246899999999988766432 1 2478999999999887663111000 000001000
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.....+...+|++++++.++.. ......|+.+.+.+|.
T Consensus 216 --~~~~~~~~~~~va~~~~~l~~~---------~~~~~~G~~i~vdgg~ 253 (259)
T PRK06125 216 --LPLGRPATPEEVADLVAFLASP---------RSGYTSGTVVTVDGGI 253 (259)
T ss_pred --CCcCCCcCHHHHHHHHHHHcCc---------hhccccCceEEecCCe
Confidence 0112356789999998887652 1224578888887664
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-15 Score=137.57 Aligned_cols=190 Identities=18% Similarity=0.145 Sum_probs=137.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~ViHlAa~ 88 (478)
|+++||||+|.||.+++++|.++ ++ |++++|+.. .+++|++|.++++++++ ++|+|||+|+.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~-vi~~~r~~~-------------~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~ 65 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HE-VITAGRSSG-------------DVQVDITDPASIRALFEKVGKVDAVVSAAGK 65 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-Cc-EEEEecCCC-------------ceEecCCChHHHHHHHHhcCCCCEEEECCCC
Confidence 47999999999999999999998 77 999987542 36899999999988776 68999999996
Q ss_pred CCCch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhH
Q 011770 89 GMSGK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 89 ~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
..... ...+....+++|+.++.++.+++.+. +..++|++||.....+. | ....|+.+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~-------------~---~~~~Y~~sK 129 (199)
T PRK07578 66 VHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPI-------------P---GGASAATVN 129 (199)
T ss_pred CCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCC-------------C---CchHHHHHH
Confidence 43221 23356677899999999999998764 23479999886542110 1 125799999
Q ss_pred HHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHH
Q 011770 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a 242 (478)
...+.+++....+. ..++++..+.|+.+-.+.. ..+.. ..+ ..++..+|+|+++..+
T Consensus 130 ~a~~~~~~~la~e~-----~~gi~v~~i~Pg~v~t~~~-----------~~~~~--~~~-----~~~~~~~~~a~~~~~~ 186 (199)
T PRK07578 130 GALEGFVKAAALEL-----PRGIRINVVSPTVLTESLE-----------KYGPF--FPG-----FEPVPAARVALAYVRS 186 (199)
T ss_pred HHHHHHHHHHHHHc-----cCCeEEEEEcCCcccCchh-----------hhhhc--CCC-----CCCCCHHHHHHHHHHH
Confidence 99999987765421 2589999999998743311 00110 111 2367899999999988
Q ss_pred HhcccCCCCCCCCCCCCCCceEEec
Q 011770 243 SMGLLDDIPGQKGRPIASGQPYFVS 267 (478)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~g~~yni~ 267 (478)
++. ...|++|+++
T Consensus 187 ~~~------------~~~g~~~~~~ 199 (199)
T PRK07578 187 VEG------------AQTGEVYKVG 199 (199)
T ss_pred hcc------------ceeeEEeccC
Confidence 862 3566777653
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-15 Score=142.02 Aligned_cols=224 Identities=13% Similarity=0.039 Sum_probs=148.8
Q ss_pred CCCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCcc--cc---cccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 7 EGIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSPW--SH---LLINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~~---~~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
.++++|+++||||+ +-||.+++++|.++|++ |++.+|+..... .. .....++.++++|++|.++++++++
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAK-LVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHH
Confidence 44678999999997 89999999999999998 999877532111 00 1112457889999999999887664
Q ss_pred -----CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCC
Q 011770 78 -----GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|++||+|+.... ..+..+....+++|+.++..+.+++.+.- -.++|++||.....+
T Consensus 82 ~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~------- 154 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERV------- 154 (257)
T ss_pred HHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccC-------
Confidence 47999999986421 11223445677899999988888877532 248999999754211
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeee
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~ 220 (478)
.|. ...|+.||+..+.+.+....+ + ..+|+++..+.|+.+-.+..... ............
T Consensus 155 ------~~~---~~~Y~asKaal~~l~~~la~e-l---~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----- 216 (257)
T PRK08594 155 ------VQN---YNVMGVAKASLEASVKYLAND-L---GKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERA----- 216 (257)
T ss_pred ------CCC---CchhHHHHHHHHHHHHHHHHH-h---hhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcC-----
Confidence 011 257999999999999776532 2 14689999999999976531110 011111111111
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
....+...+|++++++.++.. ......|+...+.+|
T Consensus 217 ----p~~r~~~p~~va~~~~~l~s~---------~~~~~tG~~~~~dgg 252 (257)
T PRK08594 217 ----PLRRTTTQEEVGDTAAFLFSD---------LSRGVTGENIHVDSG 252 (257)
T ss_pred ----CccccCCHHHHHHHHHHHcCc---------ccccccceEEEECCc
Confidence 112345689999999887752 122456777777654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-15 Score=156.10 Aligned_cols=222 Identities=21% Similarity=0.196 Sum_probs=149.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc-cccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW-SHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~-~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
+++++++||||+|.||.++++.|.++|++ |+++++...... .......+.+++.+|++|.++++++++ ++|
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~-vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 286 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAH-VVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD 286 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence 46789999999999999999999999998 999987533211 011112245688999999998887665 579
Q ss_pred EEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcCC----CeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFGI----QRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v----~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+|+..... .+..+.+..+++|+.|+.++.+++..... .++|++||.+.+.+...
T Consensus 287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~-------------- 352 (450)
T PRK08261 287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNRG-------------- 352 (450)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCC--------------
Confidence 999999965322 13345667889999999999999987433 68999999876433211
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
...|+.+|...+.++..+..+ + ...++++.++.|+.+-.+-... ++...+........ .. ..--.
T Consensus 353 --~~~Y~asKaal~~~~~~la~e-l---~~~gi~v~~v~PG~i~t~~~~~-~~~~~~~~~~~~~~--l~------~~~~p 417 (450)
T PRK08261 353 --QTNYAASKAGVIGLVQALAPL-L---AERGITINAVAPGFIETQMTAA-IPFATREAGRRMNS--LQ------QGGLP 417 (450)
T ss_pred --ChHHHHHHHHHHHHHHHHHHH-H---hhhCcEEEEEEeCcCcchhhhc-cchhHHHHHhhcCC--cC------CCCCH
Confidence 257999999888887665431 1 1468999999999875432111 11111111111100 11 11235
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
+|+++++..++.. ......|+.+.++++
T Consensus 418 ~dva~~~~~l~s~---------~~~~itG~~i~v~g~ 445 (450)
T PRK08261 418 VDVAETIAWLASP---------ASGGVTGNVVRVCGQ 445 (450)
T ss_pred HHHHHHHHHHhCh---------hhcCCCCCEEEECCC
Confidence 6999999877652 122456888888654
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-15 Score=144.01 Aligned_cols=221 Identities=16% Similarity=0.111 Sum_probs=142.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cc---cCCCeEEEEecCCCHHHH----HHHh-----
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LL---INHGVHCIQGDVVSKIDV----EKAA----- 76 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~---~~~~v~~v~gDl~d~~~l----~~~l----- 76 (478)
++++||||+|+||++++++|.++|++ |++++++....... .. ....+.++.+|++|.+++ ++++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYR-VVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCe-EEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 57999999999999999999999998 99887654322110 01 123466789999998754 3332
Q ss_pred --cCcCEEEEcccCCCCchh----h-----------hchhhhhHhhhHHHHHHHHHHHHcC----------CCeEEEEec
Q 011770 77 --RGVDCVFHVASYGMSGKE----M-----------LQFGRVDEVNINGTCHVIEACLEFG----------IQRLVYVST 129 (478)
Q Consensus 77 --~~~D~ViHlAa~~~~~~~----~-----------~~~~~~~~vNv~gt~nll~aa~~~~----------v~r~V~~SS 129 (478)
.++|+|||+||....... . .+....+++|+.++.++.+++.+.. ..++|++||
T Consensus 81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s 160 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD 160 (267)
T ss_pred ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence 358999999996432111 0 1244678999999999998876432 125677766
Q ss_pred cceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHH
Q 011770 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVS 209 (478)
Q Consensus 130 ~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~ 209 (478)
.... .+..+ ..+|+.||...|.+++....+ + ...|+++++++|+.+..|.+.. .....
T Consensus 161 ~~~~------------~~~~~----~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~~~~~~~~~--~~~~~ 218 (267)
T TIGR02685 161 AMTD------------QPLLG----FTMYTMAKHALEGLTRSAALE-L---APLQIRVNGVAPGLSLLPDAMP--FEVQE 218 (267)
T ss_pred hhcc------------CCCcc----cchhHHHHHHHHHHHHHHHHH-H---hhhCeEEEEEecCCccCccccc--hhHHH
Confidence 5321 01111 257999999999999876432 1 1468999999999987764322 11112
Q ss_pred HHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 210 LAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 210 ~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
......+ .+ ......+|++++++.++.. ......|+.+.+.+|..+
T Consensus 219 ~~~~~~~---~~-----~~~~~~~~va~~~~~l~~~---------~~~~~~G~~~~v~gg~~~ 264 (267)
T TIGR02685 219 DYRRKVP---LG-----QREASAEQIADVVIFLVSP---------KAKYITGTCIKVDGGLSL 264 (267)
T ss_pred HHHHhCC---CC-----cCCCCHHHHHHHHHHHhCc---------ccCCcccceEEECCceec
Confidence 2211111 01 1234679999999988752 122457888888766543
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=138.72 Aligned_cols=220 Identities=14% Similarity=0.063 Sum_probs=145.1
Q ss_pred CCCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCC--------cc---c--c--cccCCCeEEEEecCCCHH
Q 011770 8 GIEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNS--------PW---S--H--LLINHGVHCIQGDVVSKI 70 (478)
Q Consensus 8 ~~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~--------~~---~--~--~~~~~~v~~v~gDl~d~~ 70 (478)
.+++|+++||||+| .||++++++|+++|++ |++.++.... .. . . ......+.++++|++|.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~ 81 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGAD-IFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQND 81 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 47789999999995 7999999999999998 9887543110 00 0 0 011235778999999999
Q ss_pred HHHHHhc-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeC
Q 011770 71 DVEKAAR-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFG 135 (478)
Q Consensus 71 ~l~~~l~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g 135 (478)
++.++++ .+|+|||+|+..... .+..+.+..+++|+.++..+..++. +.+-.++|++||.....
T Consensus 82 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~- 160 (256)
T PRK12859 82 APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG- 160 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC-
Confidence 9887774 379999999864322 1233456678999999988865554 33345899999976421
Q ss_pred CccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCC
Q 011770 136 GKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGL 215 (478)
Q Consensus 136 ~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~ 215 (478)
+..+ ...|+.+|...+.+++....+ + ..++++++.++|+.+-.+.... .....+....
T Consensus 161 -----------~~~~----~~~Y~~sK~a~~~l~~~la~~-~---~~~~i~v~~v~PG~i~t~~~~~---~~~~~~~~~~ 218 (256)
T PRK12859 161 -----------PMVG----ELAYAATKGAIDALTSSLAAE-V---AHLGITVNAINPGPTDTGWMTE---EIKQGLLPMF 218 (256)
T ss_pred -----------CCCC----chHHHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEEEccccCCCCCH---HHHHHHHhcC
Confidence 1111 257999999999998776532 1 1468999999999986653221 1111122111
Q ss_pred CCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 216 VPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 216 ~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
+ ...+...+|+++++..++.. ......|+.+.+.+|
T Consensus 219 ~---------~~~~~~~~d~a~~~~~l~s~---------~~~~~~G~~i~~dgg 254 (256)
T PRK12859 219 P---------FGRIGEPKDAARLIKFLASE---------EAEWITGQIIHSEGG 254 (256)
T ss_pred C---------CCCCcCHHHHHHHHHHHhCc---------cccCccCcEEEeCCC
Confidence 1 11234578999999887652 122456776666544
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-15 Score=142.79 Aligned_cols=232 Identities=16% Similarity=0.125 Sum_probs=148.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--ccc--CCCeEEEEecCCCHHHHHHHhc------CcC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLI--NHGVHCIQGDVVSKIDVEKAAR------GVD 80 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~--~~~v~~v~gDl~d~~~l~~~l~------~~D 80 (478)
+|+++|||| |+||++++++|. +|++ |++++|+....... ... ...+.++++|++|.+++.++++ ++|
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~-Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKK-VLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 578999997 799999999996 8998 99999875421111 111 2357889999999999887775 589
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCc------cccC-CCCC----CC
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGK------EIVN-GNES----LP 147 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~------~~~~-~~E~----~p 147 (478)
+|||+||... ...++...+++|+.|+.++++++.+. .-.++|++||.+...... ...+ .+.. .+
T Consensus 79 ~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (275)
T PRK06940 79 GLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLP 155 (275)
T ss_pred EEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccccccc
Confidence 9999999643 22456788999999999999998764 113567778766532210 0000 0000 01
Q ss_pred C-CCC--CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH----HHHHHHHHcCCCCeee
Q 011770 148 Y-FPI--DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL----PRIVSLAKLGLVPFKI 220 (478)
Q Consensus 148 ~-~p~--~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~----~~~i~~~~~g~~~~~~ 220 (478)
. .+. ......|+.||+..+.+.+....+ + ...|+++.++.|+.+..+.....+ ......+....+
T Consensus 156 ~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e-~---~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p---- 227 (275)
T PRK06940 156 FLQPDAIEDSLHAYQIAKRANALRVMAEAVK-W---GERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSP---- 227 (275)
T ss_pred cccccccCCccchhHHHHHHHHHHHHHHHHH-H---ccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCC----
Confidence 0 000 011357999999999888765431 1 247899999999999877422111 111111111111
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 228 -----~~r~~~peeia~~~~fL~s~---------~~~~itG~~i~vdgg~ 263 (275)
T PRK06940 228 -----AGRPGTPDEIAALAEFLMGP---------RGSFITGSDFLVDGGA 263 (275)
T ss_pred -----cccCCCHHHHHHHHHHHcCc---------ccCcccCceEEEcCCe
Confidence 12356789999998887642 1224567888776653
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=144.52 Aligned_cols=202 Identities=21% Similarity=0.132 Sum_probs=137.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--cc-CCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LI-NHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~-~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
|+++||||+|+||.+++++|.++|++ |++++|+.+..... . .. ...+.++.+|++|.+++.++++ ++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999998 99998865421100 0 01 1224567899999988776654 47
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH-----cCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE-----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~-----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|+|||+||..... .+..+.+..+++|+.++.++++++.. ....++|++||...+.+. |
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~-------------~ 146 (272)
T PRK07832 80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVAL-------------P 146 (272)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCC-------------C
Confidence 9999999864322 23345567889999999999999753 223589999997542111 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-------HHHHHHHHcCCCCeeeCCC
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-------PRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-------~~~i~~~~~g~~~~~~g~g 223 (478)
....|+.||...+.+......+ + ...++++++++|+.+.++...... .........
T Consensus 147 ---~~~~Y~~sK~a~~~~~~~l~~e-~---~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------- 209 (272)
T PRK07832 147 ---WHAAYSASKFGLRGLSEVLRFD-L---ARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVD---------- 209 (272)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHH----------
Confidence 1256999999888777554321 1 146899999999999988532210 000000000
Q ss_pred CccccceeHHHHHHHHHHHHh
Q 011770 224 SVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~ 244 (478)
......+..+|+|++++.+++
T Consensus 210 ~~~~~~~~~~~vA~~~~~~~~ 230 (272)
T PRK07832 210 RFRGHAVTPEKAAEKILAGVE 230 (272)
T ss_pred hcccCCCCHHHHHHHHHHHHh
Confidence 011234689999999999886
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-14 Score=139.70 Aligned_cols=189 Identities=16% Similarity=0.146 Sum_probs=128.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+++++++||||+|+||++++++|+++|++ |++++|+....... ........+.+|++|.+++.+.+.++|++||+||
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG 88 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHSKINNSES-NDESPNEWIKWECGKEESLDKQLASLDVLILNHG 88 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECCchhhhhh-hccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence 466789999999999999999999999998 99999875221111 1111235788999999999999999999999999
Q ss_pred CCCCc-hhhhchhhhhHhhhHHHHHHHHHHHHcC-------CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchH
Q 011770 88 YGMSG-KEMLQFGRVDEVNINGTCHVIEACLEFG-------IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYG 159 (478)
Q Consensus 88 ~~~~~-~~~~~~~~~~~vNv~gt~nll~aa~~~~-------v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~ 159 (478)
..... .+..+....+++|+.|+.++++++.+.- -..++..||.... . + + ....|+
T Consensus 89 ~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~-~-----------~--~---~~~~Y~ 151 (245)
T PRK12367 89 INPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEI-Q-----------P--A---LSPSYE 151 (245)
T ss_pred cCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEeccccc-C-----------C--C---CCchhH
Confidence 64322 2345677889999999999999887531 1124344443221 0 0 0 014699
Q ss_pred hhHHHHHHHH---HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHH
Q 011770 160 RSKSVAEQLV---LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLV 236 (478)
Q Consensus 160 ~sK~~aE~~v---~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva 236 (478)
.||...+.+. .+...+ . ...++.+..+.|+.+..+-. . ...+..+|+|
T Consensus 152 aSKaal~~~~~l~~~l~~e-~---~~~~i~v~~~~pg~~~t~~~----------------~---------~~~~~~~~vA 202 (245)
T PRK12367 152 ISKRLIGQLVSLKKNLLDK-N---ERKKLIIRKLILGPFRSELN----------------P---------IGIMSADFVA 202 (245)
T ss_pred HHHHHHHHHHHHHHHHHHh-h---cccccEEEEecCCCcccccC----------------c---------cCCCCHHHHH
Confidence 9999976433 111100 0 14678888888876532210 0 0145689999
Q ss_pred HHHHHHHh
Q 011770 237 LALILASM 244 (478)
Q Consensus 237 ~a~~~a~~ 244 (478)
+.++.+++
T Consensus 203 ~~i~~~~~ 210 (245)
T PRK12367 203 KQILDQAN 210 (245)
T ss_pred HHHHHHHh
Confidence 99998886
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=141.60 Aligned_cols=223 Identities=13% Similarity=0.090 Sum_probs=148.9
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCcc--ccc-ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSPW--SHL-LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~~~-~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||++ -||.+++++|.++|++ |++.+|+..... ... .......++++|++|.++++++++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCE-EEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5678999999997 9999999999999998 999887642110 011 011223468999999999887764
Q ss_pred -CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 -GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 -~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
.+|++||+||.... ..+..+++..+++|+.++.++.+++... .-.++|++||.+...+
T Consensus 84 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~----------- 152 (271)
T PRK06505 84 GKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRV----------- 152 (271)
T ss_pred CCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcccc-----------
Confidence 57999999996431 1233456778899999999998877643 1148999999754211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~ 224 (478)
.|. ...|+.||...+.+++....+ + ...|+++..+.|+.|-.+..... ............+.
T Consensus 153 --~~~---~~~Y~asKaAl~~l~r~la~e-l---~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~------- 216 (271)
T PRK06505 153 --MPN---YNVMGVAKAALEASVRYLAAD-Y---GPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPL------- 216 (271)
T ss_pred --CCc---cchhhhhHHHHHHHHHHHHHH-H---hhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCCc-------
Confidence 011 257999999999988766432 1 24789999999999977642211 11111122211111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..+...+|++++++.++.. ......|+...+.+|.
T Consensus 217 --~r~~~peeva~~~~fL~s~---------~~~~itG~~i~vdgG~ 251 (271)
T PRK06505 217 --RRTVTIDEVGGSALYLLSD---------LSSGVTGEIHFVDSGY 251 (271)
T ss_pred --cccCCHHHHHHHHHHHhCc---------cccccCceEEeecCCc
Confidence 1244578999999887752 1224567777776653
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=141.98 Aligned_cols=169 Identities=18% Similarity=0.136 Sum_probs=123.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-----CcCEEEEc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-----GVDCVFHV 85 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-----~~D~ViHl 85 (478)
|++++||||+|++|++++++|.++|++ |++++|++.... ......++.++.+|++|.++++++++ ++|+|||+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~-~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ 78 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQ-VTATVRGPQQDT-ALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVN 78 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCE-EEEEeCCCcchH-HHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEc
Confidence 478999999999999999999999998 999998865321 11223467888999999998887765 58999999
Q ss_pred ccCCCCc------hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 86 ASYGMSG------KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 86 Aa~~~~~------~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
|+..... ....+....+++|+.++.++.+++.+. +..+++++||... .... .+.. ...
T Consensus 79 ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g---~~~~------~~~~----~~~ 145 (225)
T PRK08177 79 AGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLG---SVEL------PDGG----EMP 145 (225)
T ss_pred CcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCcc---cccc------CCCC----Ccc
Confidence 9864321 122345667789999999999988654 2347888887532 1110 0001 124
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
.|+.+|...|.+++.+..+ + +.+++++..++|+.+-.+
T Consensus 146 ~Y~~sK~a~~~~~~~l~~e-~---~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 146 LYKASKAALNSMTRSFVAE-L---GEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred chHHHHHHHHHHHHHHHHH-h---hcCCeEEEEEcCCceecC
Confidence 6999999999999876532 1 246899999999998655
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=139.94 Aligned_cols=226 Identities=13% Similarity=0.073 Sum_probs=151.2
Q ss_pred cCCCCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCcc--ccc-ccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 5 ENEGIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSPW--SHL-LINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~~~-~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
.++++++|+++||||+ +-||.+++++|+++|++ |++.+|+..... ... .....+.++++|++|.++++++++
T Consensus 4 ~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~-v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 4 PLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAE-LAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred cccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHH
Confidence 3455778999999998 59999999999999998 999988643210 010 111235678999999998887664
Q ss_pred -----CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCC
Q 011770 78 -----GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
.+|++||+|+.... ..+..+.+..+++|+.++.++.+++...- -.++|++||.....+
T Consensus 83 ~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~------- 155 (258)
T PRK07533 83 AEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKV------- 155 (258)
T ss_pred HHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccC-------
Confidence 47999999996431 12334567888999999999999876541 147999998643110
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeee
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~ 220 (478)
.| ....|+.||...+.+.+....+ + ..+|+++.++.|+.+-.+-.... .....+......+
T Consensus 156 ------~~---~~~~Y~asKaal~~l~~~la~e-l---~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p---- 218 (258)
T PRK07533 156 ------VE---NYNLMGPVKAALESSVRYLAAE-L---GPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAP---- 218 (258)
T ss_pred ------Cc---cchhhHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCC----
Confidence 01 1257999999999988765432 1 24689999999999866532110 1122222222111
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+...+|++++++.++.. ......|+.+.+.+|
T Consensus 219 -----~~r~~~p~dva~~~~~L~s~---------~~~~itG~~i~vdgg 253 (258)
T PRK07533 219 -----LRRLVDIDDVGAVAAFLASD---------AARRLTGNTLYIDGG 253 (258)
T ss_pred -----cCCCCCHHHHHHHHHHHhCh---------hhccccCcEEeeCCc
Confidence 12356789999999887752 122456777777554
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=140.65 Aligned_cols=224 Identities=12% Similarity=0.100 Sum_probs=147.7
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHHcCCceEEEEecCCCCccc--cc-ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGG--LGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HL-LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGa--tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~-~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++++++|||| ++-||.+++++|.++|++ |++.+|....... .. ........+++|++|.++++++++
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAE-LAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH
Confidence 467789999997 679999999999999998 9887664321100 01 111234578999999999887764
Q ss_pred --CcCEEEEcccCCCCc---------hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCC
Q 011770 78 --GVDCVFHVASYGMSG---------KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~---------~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
++|++||+||..... .+..+.+..+++|+.++..+.+++... +-.++|++||.....+.
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~------- 154 (261)
T PRK08690 82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAI------- 154 (261)
T ss_pred hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCC-------
Confidence 589999999975321 112234566789999988888776542 22479999987642110
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g 221 (478)
|. ...|+.||...+.+.+....+ + ..+|+++..+.|+.|-.+..... .+.....+....+
T Consensus 155 ------~~---~~~Y~asKaal~~l~~~la~e-~---~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p----- 216 (261)
T PRK08690 155 ------PN---YNVMGMAKASLEAGIRFTAAC-L---GKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNP----- 216 (261)
T ss_pred ------CC---cccchhHHHHHHHHHHHHHHH-h---hhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCC-----
Confidence 11 257999999999988765421 1 24789999999999976532111 1122222221111
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|+|+++..++.. ......|+.+-+.+|.
T Consensus 217 ----~~r~~~peevA~~v~~l~s~---------~~~~~tG~~i~vdgG~ 252 (261)
T PRK08690 217 ----LRRNVTIEEVGNTAAFLLSD---------LSSGITGEITYVDGGY 252 (261)
T ss_pred ----CCCCCCHHHHHHHHHHHhCc---------ccCCcceeEEEEcCCc
Confidence 12356789999999988762 1224577777776664
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-15 Score=143.10 Aligned_cols=221 Identities=16% Similarity=0.104 Sum_probs=145.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
|+++||||+|.||++++++|.++|++ |++++|+....... .....++.++++|++|.++++++++ ++|+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGAR-VVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 47999999999999999999999998 99999875421110 1112357889999999999887764 5899
Q ss_pred EEEcccCCCCc------hhhhchhhhhHhhhHHHHHHHHHH----H-HcCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 82 VFHVASYGMSG------KEMLQFGRVDEVNINGTCHVIEAC----L-EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 82 ViHlAa~~~~~------~~~~~~~~~~~vNv~gt~nll~aa----~-~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|||+||..... ....+.....++|+.++..+...+ . +.+-.++|++||.....+ ..+
T Consensus 80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~------------~~~ 147 (259)
T PRK08340 80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEP------------MPP 147 (259)
T ss_pred EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCC------------CCC
Confidence 99999964211 112233445678887766554443 2 233468999999876211 001
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHH------------HHHHcCCCCe
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIV------------SLAKLGLVPF 218 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i------------~~~~~g~~~~ 218 (478)
...|+.+|...+.+.+....+ + ...|+++..+.|+.+-.|.....+.... +.+...
T Consensus 148 ----~~~y~~sKaa~~~~~~~la~e-~---~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 215 (259)
T PRK08340 148 ----LVLADVTRAGLVQLAKGVSRT-Y---GGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLER---- 215 (259)
T ss_pred ----chHHHHHHHHHHHHHHHHHHH-h---CCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhcc----
Confidence 257999999999999876542 2 2478999999999987664321111100 011111
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.....+...+|+++++..++.. ......|++..+.+|..
T Consensus 216 -----~p~~r~~~p~dva~~~~fL~s~---------~~~~itG~~i~vdgg~~ 254 (259)
T PRK08340 216 -----TPLKRTGRWEELGSLIAFLLSE---------NAEYMLGSTIVFDGAMT 254 (259)
T ss_pred -----CCccCCCCHHHHHHHHHHHcCc---------ccccccCceEeecCCcC
Confidence 0112356789999999887752 12346777777776643
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=163.05 Aligned_cols=198 Identities=17% Similarity=0.163 Sum_probs=144.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++|+++||||+|+||.+++++|+++|++ |++++|++...... .....++.++.+|++|.++++++++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGAT-VFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999998 99999875421110 0113458889999999999988776
Q ss_pred -CcCEEEEcccCCCCch---h---hhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK---E---MLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~---~---~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+||...... . ..+.+..+++|+.|+.++.+++. +.+..++|++||.+++.+.+
T Consensus 447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 517 (657)
T PRK07201 447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAP--------- 517 (657)
T ss_pred CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC---------
Confidence 5899999999643211 1 23456788999999988877764 45667999999987742211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
....|+.||...|.+++.+..+ + ...++++++++|+.|..+..... . .++ .
T Consensus 518 -------~~~~Y~~sK~a~~~~~~~la~e-~---~~~~i~v~~v~pg~v~T~~~~~~-----------~---~~~----~ 568 (657)
T PRK07201 518 -------RFSAYVASKAALDAFSDVAASE-T---LSDGITFTTIHMPLVRTPMIAPT-----------K---RYN----N 568 (657)
T ss_pred -------CcchHHHHHHHHHHHHHHHHHH-H---HhhCCcEEEEECCcCcccccCcc-----------c---ccc----C
Confidence 1257999999999998766432 1 14689999999999987743210 0 000 1
Q ss_pred ccceeHHHHHHHHHHHHh
Q 011770 227 TDWIYVDNLVLALILASM 244 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~ 244 (478)
...+..+++|+.++.++.
T Consensus 569 ~~~~~~~~~a~~i~~~~~ 586 (657)
T PRK07201 569 VPTISPEEAADMVVRAIV 586 (657)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 124678999999998875
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-15 Score=138.38 Aligned_cols=202 Identities=15% Similarity=0.130 Sum_probs=143.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc----CcCEEEEcccC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR----GVDCVFHVASY 88 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~----~~D~ViHlAa~ 88 (478)
+++||||+|.||++++++|.++|++ |++++|+..... ......+++++++|++|.++++++++ ++|++||+|+.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~-v~~~~r~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~ 79 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHK-VTLVGARRDDLE-VAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAP 79 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCc
Confidence 6999999999999999999999998 999988754211 11112246788999999999888775 58999999974
Q ss_pred CCC---c------hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCc
Q 011770 89 GMS---G------KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS 157 (478)
Q Consensus 89 ~~~---~------~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~ 157 (478)
... . ....+....+++|+.++.++++++.+. .-.++|++||... + . ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~--------------~---~---~~~ 139 (223)
T PRK05884 80 SWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP--------------P---A---GSA 139 (223)
T ss_pred cccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC--------------C---C---ccc
Confidence 211 0 023456788899999999999998763 2258999998541 0 0 156
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
|+.||+..+.+++....+ + ..+|+++..+.|+.+..+.. +... .. + .-..+|+++
T Consensus 140 Y~asKaal~~~~~~la~e-~---~~~gI~v~~v~PG~v~t~~~--------~~~~--~~------p-----~~~~~~ia~ 194 (223)
T PRK05884 140 EAAIKAALSNWTAGQAAV-F---GTRGITINAVACGRSVQPGY--------DGLS--RT------P-----PPVAAEIAR 194 (223)
T ss_pred cHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEecCccCchhh--------hhcc--CC------C-----CCCHHHHHH
Confidence 999999999999766532 2 24789999999999865421 1010 10 0 116789999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
++..++.. ......|+++.+.+|.
T Consensus 195 ~~~~l~s~---------~~~~v~G~~i~vdgg~ 218 (223)
T PRK05884 195 LALFLTTP---------AARHITGQTLHVSHGA 218 (223)
T ss_pred HHHHHcCc---------hhhccCCcEEEeCCCe
Confidence 99887652 1234567777776554
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=140.17 Aligned_cols=223 Identities=16% Similarity=0.130 Sum_probs=148.9
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCc-cc---ccc--cCCCeEEEEecCCCHHHHHHHhc--
Q 011770 8 GIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSP-WS---HLL--INHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 8 ~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~-~~---~~~--~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
++++|+++||||+ +-||.+++++|.++|++ |++.+++.... .. ... ....+.++++|++|.++++++++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAE-LGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 4667899999986 79999999999999998 98876643211 00 001 11246688999999999887664
Q ss_pred -----CcCEEEEcccCCCC----c----hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCC
Q 011770 78 -----GVDCVFHVASYGMS----G----KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~----~----~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|++||+|+.... . .+..+.+..+++|+.++..+.+++.+. .-.++|++||.....+
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~------- 154 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRA------- 154 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccC-------
Confidence 57999999996421 1 123456778899999999998887653 1258999999653110
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeee
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~ 220 (478)
. |. ...|+.||...+.+.+....+ + +.+|+++.++.|+.|-.+-.... .+.....+....
T Consensus 155 -----~-~~---~~~Y~asKaal~~l~~~la~e-l---~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~----- 216 (258)
T PRK07370 155 -----I-PN---YNVMGVAKAALEASVRYLAAE-L---GPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKA----- 216 (258)
T ss_pred -----C-cc---cchhhHHHHHHHHHHHHHHHH-h---CcCCeEEEEEecCcccCchhhccccchhhhhhhhhcC-----
Confidence 0 11 257999999999999876532 1 24789999999999976532111 111111111111
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
....+...+|+++++..++.. ......|+.+.+.+|
T Consensus 217 ----p~~r~~~~~dva~~~~fl~s~---------~~~~~tG~~i~vdgg 252 (258)
T PRK07370 217 ----PLRRTVTQTEVGNTAAFLLSD---------LASGITGQTIYVDAG 252 (258)
T ss_pred ----CcCcCCCHHHHHHHHHHHhCh---------hhccccCcEEEECCc
Confidence 112355679999999887752 122456777777655
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=133.15 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=120.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-------cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-------LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-------~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++++||||+|+||.+++++|.++|+..|++++|++...... .....++.++.+|+++.++++++++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47999999999999999999999974377777765432110 0113457789999999988887765
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
.+|.|||+|+..... ....+.+..+++|+.++.++++++++.+.+++|++||....++...
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~~~--------------- 145 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGNPG--------------- 145 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCCCC---------------
Confidence 369999999964322 1224456778999999999999998888889999999766433211
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCcee
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIY 196 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vy 196 (478)
...|+.+|...+.++.... ..+++++++.|+.+-
T Consensus 146 -~~~y~~sk~~~~~~~~~~~--------~~~~~~~~~~~g~~~ 179 (180)
T smart00822 146 -QANYAAANAFLDALAAHRR--------ARGLPATSINWGAWA 179 (180)
T ss_pred -chhhHHHHHHHHHHHHHHH--------hcCCceEEEeecccc
Confidence 2569999999999996543 468888888887653
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-14 Score=137.24 Aligned_cols=223 Identities=13% Similarity=0.113 Sum_probs=147.6
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCc--ccc-cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSP--WSH-LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~-~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||++ -||++++++|.++|++ |++.+|+.... ... ....+.+.++.+|++|.++++++++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~-vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCE-EEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 5678999999985 8999999999999998 99888763210 000 1112345678999999999888764
Q ss_pred -CcCEEEEcccCCCCc---------hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 -GVDCVFHVASYGMSG---------KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~---------~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
.+|++||+||..... .+..+.+..+++|+.|...+.+++... .-.++|++||.....
T Consensus 83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~----------- 151 (262)
T PRK07984 83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------- 151 (262)
T ss_pred CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC-----------
Confidence 479999999964321 122345567789999988888887543 114799999865310
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g 223 (478)
+. |. ...|+.||...+.+++....+ + ...++++.++-|+.|--+.... .............+
T Consensus 152 -~~-~~---~~~Y~asKaal~~l~~~la~e-l---~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p------- 215 (262)
T PRK07984 152 -AI-PN---YNVMGLAKASLEANVRYMANA-M---GPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP------- 215 (262)
T ss_pred -CC-CC---cchhHHHHHHHHHHHHHHHHH-h---cccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCC-------
Confidence 00 11 257999999999999876532 1 2468999999999986642111 11112222221111
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 216 --~~r~~~pedva~~~~~L~s~---------~~~~itG~~i~vdgg~ 251 (262)
T PRK07984 216 --IRRTVTIEDVGNSAAFLCSD---------LSAGISGEVVHVDGGF 251 (262)
T ss_pred --CcCCCCHHHHHHHHHHHcCc---------ccccccCcEEEECCCc
Confidence 12356789999999887752 1224567777776653
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=138.85 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=148.4
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHHcCCceEEEEecCCCCcc--ccc-ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGG--LGHVGSALCLELVRRGAYQVRAFDLRTNSPW--SHL-LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGa--tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~~~-~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++|+++|||| ++-||.+++++|.++|++ |++.+|...... ... ........+++|++|+++++++++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAE-LAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQH 81 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCe-EEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHH
Confidence 466789999996 679999999999999998 988765422110 000 111223468899999999888775
Q ss_pred --CcCEEEEcccCCCCc---------hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCC
Q 011770 78 --GVDCVFHVASYGMSG---------KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~---------~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|++||+||..... .+..+.+..+++|+.++..+.+++... +-.++|++||.....+
T Consensus 82 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~--------- 152 (260)
T PRK06997 82 WDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERV--------- 152 (260)
T ss_pred hCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccC---------
Confidence 579999999964321 123456678899999999999888764 2258999998654210
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~ 222 (478)
. |. ...|+.||+..+.+.+....+ + ..+|+++..+.|+.|-.+-.... .....+.+....+
T Consensus 153 ---~-~~---~~~Y~asKaal~~l~~~la~e-l---~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p------ 215 (260)
T PRK06997 153 ---V-PN---YNTMGLAKASLEASVRYLAVS-L---GPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNAP------ 215 (260)
T ss_pred ---C-CC---cchHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEeeCccccchhccccchhhHHHHHHhcCc------
Confidence 0 11 256999999999998766432 2 24689999999999866422111 1111111111111
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+...+|+++++..++.. ......|+++.+.+|
T Consensus 216 ---~~r~~~pedva~~~~~l~s~---------~~~~itG~~i~vdgg 250 (260)
T PRK06997 216 ---LRRNVTIEEVGNVAAFLLSD---------LASGVTGEITHVDSG 250 (260)
T ss_pred ---ccccCCHHHHHHHHHHHhCc---------cccCcceeEEEEcCC
Confidence 12356789999999988762 123466788777655
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=137.21 Aligned_cols=224 Identities=16% Similarity=0.071 Sum_probs=147.7
Q ss_pred CCCCCCeEEEEcC--CChhHHHHHHHHHHcCCceEEEEecCCCCc-ccc--cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGG--LGHVGSALCLELVRRGAYQVRAFDLRTNSP-WSH--LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGa--tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~-~~~--~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
..+++|+++|||| ++-||.+++++|.++|++ |++.+|+.... ... ......+.++++|++|.++++++++
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~-v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 3 GLLEGKRILVTGVITDSSIAFHVARVAQEQGAE-VVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred ccccCCEEEEeCCCCcchHHHHHHHHHHHCCCE-EEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 3467789999999 899999999999999998 99998754211 111 1112357789999999998887664
Q ss_pred ---CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCC
Q 011770 78 ---GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|++||+||.... ..+..+....+++|+.++.++.+++...= -.++|++|+....
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~----------- 150 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV----------- 150 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc-----------
Confidence 58999999997531 11223445678999999999888876531 2478888754220
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~ 222 (478)
. .|. ...|+.||...+.+.+....+ + ..+|++++.+.|+.+-.+..... .....+......+.
T Consensus 151 ~---~~~---~~~Y~asKaal~~l~~~la~e-l---~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----- 215 (256)
T PRK07889 151 A---WPA---YDWMGVAKAALESTNRYLARD-L---GPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPL----- 215 (256)
T ss_pred c---CCc---cchhHHHHHHHHHHHHHHHHH-h---hhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCcc-----
Confidence 0 011 256999999999988766432 1 24789999999999977632211 01111111111110
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.+.+...+|+|++++.++.. ......|+.+.+.+|
T Consensus 216 ---~~~~~~p~evA~~v~~l~s~---------~~~~~tG~~i~vdgg 250 (256)
T PRK07889 216 ---GWDVKDPTPVARAVVALLSD---------WFPATTGEIVHVDGG 250 (256)
T ss_pred ---ccccCCHHHHHHHHHHHhCc---------ccccccceEEEEcCc
Confidence 11356789999999987752 122456777777654
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-14 Score=139.09 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=148.2
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCc--cccc-c-cCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 9 IEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSP--WSHL-L-INHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 9 ~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~~-~-~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++|+++||||+ +-||.++++.|.++|++ |++.+|+.... .... . .... ..+++|++|.++++++++
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAE-LAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 457899999997 79999999999999998 99988764210 0001 0 1122 578999999999887764
Q ss_pred --CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCC
Q 011770 78 --GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 --~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+||.... ..+..+.+..+++|+.|+..+.+++...= -.++|++||.+...+
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~---------- 150 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKY---------- 150 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccC----------
Confidence 57999999996421 12234567789999999999988887531 248999998653210
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g 223 (478)
.|. ...|+.||...+.+.+....+ + ..+|+++..+.|+.|..+..... ............
T Consensus 151 ---~~~---~~~Y~asKaal~~l~~~la~e-l---~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 212 (274)
T PRK08415 151 ---VPH---YNVMGVAKAALESSVRYLAVD-L---GKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEINA-------- 212 (274)
T ss_pred ---CCc---chhhhhHHHHHHHHHHHHHHH-h---hhcCeEEEEEecCccccHHHhccchhhHHhhhhhhhC--------
Confidence 011 256999999999998776532 2 24789999999999976532110 000000001111
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 213 -pl~r~~~pedva~~v~fL~s~---------~~~~itG~~i~vdGG~ 249 (274)
T PRK08415 213 -PLKKNVSIEEVGNSGMYLLSD---------LSSGVTGEIHYVDAGY 249 (274)
T ss_pred -chhccCCHHHHHHHHHHHhhh---------hhhcccccEEEEcCcc
Confidence 112346689999999887752 1224567788777664
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=137.71 Aligned_cols=204 Identities=19% Similarity=0.205 Sum_probs=144.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc---cCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL---INHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~---~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++++++|||||+-||..++++|.++|++ |+.+.|+.+..... .. ..-.++++.+|++|+++++++.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYN-LILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 367789999999999999999999999999 99999987632110 11 12347889999999999888764
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
.+|++||+||++..+. +..+....+++|+.++..+-.+.. +.+-.++|.++|...+... |
T Consensus 82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~----------p 151 (265)
T COG0300 82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPT----------P 151 (265)
T ss_pred CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCC----------c
Confidence 5899999999876542 334456788999998777666554 4566689999998763111 1
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
+ .+.|+.||+..-.+-..... ++ ...|++++.+-|+.+.-+..+. .+... .. .....
T Consensus 152 ~------~avY~ATKa~v~~fSeaL~~-EL---~~~gV~V~~v~PG~~~T~f~~~----------~~~~~-~~--~~~~~ 208 (265)
T COG0300 152 Y------MAVYSATKAFVLSFSEALRE-EL---KGTGVKVTAVCPGPTRTEFFDA----------KGSDV-YL--LSPGE 208 (265)
T ss_pred c------hHHHHHHHHHHHHHHHHHHH-Hh---cCCCeEEEEEecCccccccccc----------ccccc-cc--ccchh
Confidence 1 36799999987555433322 22 2689999999999887664320 11100 00 01234
Q ss_pred cceeHHHHHHHHHHHHhc
Q 011770 228 DWIYVDNLVLALILASMG 245 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~ 245 (478)
-++..+|+|++.+.++++
T Consensus 209 ~~~~~~~va~~~~~~l~~ 226 (265)
T COG0300 209 LVLSPEDVAEAALKALEK 226 (265)
T ss_pred hccCHHHHHHHHHHHHhc
Confidence 577899999999999873
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-14 Score=132.78 Aligned_cols=198 Identities=13% Similarity=0.083 Sum_probs=133.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh---cCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA---RGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l---~~~D~ViHlAa 87 (478)
|+|+||||+|+||++++++|.++|.. .|+..+|.... .....++.++++|++|.++++++. .++|+|||+||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG 76 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP----DFQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVG 76 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc----ccccCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCc
Confidence 48999999999999999999998632 16655554331 122356888999999998877654 47899999999
Q ss_pred CCCCc----------hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 88 YGMSG----------KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 88 ~~~~~----------~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
..... .+.......+++|+.++.++.+++... +..+++++||... ... ++ +..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~---~~~----~~--~~~~--- 144 (235)
T PRK09009 77 MLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVG---SIS----DN--RLGG--- 144 (235)
T ss_pred cccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeeccc---ccc----cC--CCCC---
Confidence 65321 011234467889999998888877653 3458999987421 100 01 1111
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
...|+.+|+..+.+++....+ +.+ ...++++..+.|+.+..+.... ..... ....+...+
T Consensus 145 -~~~Y~asK~a~~~~~~~la~e-~~~-~~~~i~v~~v~PG~v~t~~~~~--------~~~~~---------~~~~~~~~~ 204 (235)
T PRK09009 145 -WYSYRASKAALNMFLKTLSIE-WQR-SLKHGVVLALHPGTTDTALSKP--------FQQNV---------PKGKLFTPE 204 (235)
T ss_pred -cchhhhhHHHHHHHHHHHHHH-hhc-ccCCeEEEEEcccceecCCCcc--------hhhcc---------ccCCCCCHH
Confidence 257999999999998766532 110 1258999999999997774321 11111 112356789
Q ss_pred HHHHHHHHHHhc
Q 011770 234 NLVLALILASMG 245 (478)
Q Consensus 234 Dva~a~~~a~~~ 245 (478)
|++++++.++..
T Consensus 205 ~~a~~~~~l~~~ 216 (235)
T PRK09009 205 YVAQCLLGIIAN 216 (235)
T ss_pred HHHHHHHHHHHc
Confidence 999999988873
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-15 Score=160.08 Aligned_cols=170 Identities=23% Similarity=0.215 Sum_probs=127.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+.+++++||||+|+||++++++|.++|++ |++++|+.+..... .....++.++.+|++|.+++.++++
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999 99999875422110 0112457889999999999888775
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
.+|+|||+||....+. +..+....+++|+.|+.++.+++... + -.++|++||.+.+.+..
T Consensus 391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------- 460 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSR---------- 460 (582)
T ss_pred CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCC----------
Confidence 4799999999754321 33456778889999999998876543 3 24899999988742211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
....|+.||...|.++.....+ + ...|+++++++|+.|-.+
T Consensus 461 ------~~~~Y~~sKaa~~~~~~~l~~e-~---~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 461 ------SLPAYATSKAAVLMLSECLRAE-L---AAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ------CCcHHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEEeCCCccc
Confidence 1257999999999888665432 1 246899999999998654
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-14 Score=135.52 Aligned_cols=223 Identities=12% Similarity=0.061 Sum_probs=147.9
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCc--ccccccC-CCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSP--WSHLLIN-HGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~~~~~-~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||++ -||.+++++|.++|++ |++.+|+.... ....... ....++++|++|+++++++++
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~-v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAE-LWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCE-EEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 5678999999997 7999999999999998 99887753211 0011111 223457899999999887774
Q ss_pred -CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 -GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 -~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+|+.... ..+..+....+++|+.++..+++++...- -.++|++||.....+
T Consensus 85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~----------- 153 (260)
T PRK06603 85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKV----------- 153 (260)
T ss_pred CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccC-----------
Confidence 47999999986421 11334567788999999999988875431 148999999654211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
.|. ...|+.||+..+.+.+....+ + ..+|+++.++.|+.+-.+.... ..+..........+
T Consensus 154 --~~~---~~~Y~asKaal~~l~~~la~e-l---~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p-------- 216 (260)
T PRK06603 154 --IPN---YNVMGVAKAALEASVKYLAND-M---GENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAP-------- 216 (260)
T ss_pred --CCc---ccchhhHHHHHHHHHHHHHHH-h---hhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCC--------
Confidence 011 257999999999988766532 2 2478999999999996652110 01112222221111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|+++++..++.. ......|+.+.+.+|.
T Consensus 217 -~~r~~~pedva~~~~~L~s~---------~~~~itG~~i~vdgG~ 252 (260)
T PRK06603 217 -LKRNTTQEDVGGAAVYLFSE---------LSKGVTGEIHYVDCGY 252 (260)
T ss_pred -cCCCCCHHHHHHHHHHHhCc---------ccccCcceEEEeCCcc
Confidence 12345689999999988752 1224567777776653
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-14 Score=136.41 Aligned_cols=224 Identities=12% Similarity=0.068 Sum_probs=149.3
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCcc--ccc-ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSPW--SHL-LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~~~-~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++|+++||||+ +-||.+++++|.++|++ |++.+|+..... ... ........+++|++|.++++++++
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~-V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAE-LAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence 3567899999997 89999999999999998 988876532110 001 111235578999999999887764
Q ss_pred --CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 --GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 --~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+|+.... ..+..+.+..+++|+.++.++++++.+. +-.++|++||.....+
T Consensus 86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~---------- 155 (272)
T PRK08159 86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKV---------- 155 (272)
T ss_pred cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccC----------
Confidence 47999999996431 1133456788899999999999988764 1258999998643100
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g 223 (478)
.|. ...|+.||...+.+++....+ + ...++++.++.|+.+..+..... ............+
T Consensus 156 ---~p~---~~~Y~asKaal~~l~~~la~e-l---~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------- 218 (272)
T PRK08159 156 ---MPH---YNVMGVAKAALEASVKYLAVD-L---GPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAP------- 218 (272)
T ss_pred ---CCc---chhhhhHHHHHHHHHHHHHHH-h---cccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCCc-------
Confidence 011 256999999999998766432 2 24789999999999866421110 0111111111111
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+...+|++++++.++.. ......|+.+.+.+|.
T Consensus 219 --~~r~~~peevA~~~~~L~s~---------~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 219 --LRRTVTIEEVGDSALYLLSD---------LSRGVTGEVHHVDSGY 254 (272)
T ss_pred --ccccCCHHHHHHHHHHHhCc---------cccCccceEEEECCCc
Confidence 11246789999999888752 1224578888887764
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-14 Score=142.17 Aligned_cols=186 Identities=19% Similarity=0.153 Sum_probs=124.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-ccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
++++|+|+||||+|+||++++++|.++|++ |++++|++....... ....++..+.+|++|.+++.+.+.++|++||+|
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~-Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAK-VVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 356789999999999999999999999998 999998754211110 112246788999999999999999999999999
Q ss_pred cCCCC-chhhhchhhhhHhhhHHHHHHHHHHHHc----CC---C-eEEEEeccceeeCCccccCCCCCCCCCCCCccCCc
Q 011770 87 SYGMS-GKEMLQFGRVDEVNINGTCHVIEACLEF----GI---Q-RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS 157 (478)
Q Consensus 87 a~~~~-~~~~~~~~~~~~vNv~gt~nll~aa~~~----~v---~-r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~ 157 (478)
|.... ..+.++.+..+++|+.|+.++++++.+. +. + .+|.+|+... .| +. ...
T Consensus 254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-------------~~--~~---~~~ 315 (406)
T PRK07424 254 GINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-------------NP--AF---SPL 315 (406)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-------------cC--CC---chH
Confidence 86432 2233456788999999999999998652 21 1 2444443211 01 10 135
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
|+.||.+.+.+.. .... ..+..+..+.| ||..... + ....+..+|+|+
T Consensus 316 Y~ASKaAl~~l~~-l~~~------~~~~~I~~i~~----gp~~t~~----------~-----------~~~~~spe~vA~ 363 (406)
T PRK07424 316 YELSKRALGDLVT-LRRL------DAPCVVRKLIL----GPFKSNL----------N-----------PIGVMSADWVAK 363 (406)
T ss_pred HHHHHHHHHHHHH-HHHh------CCCCceEEEEe----CCCcCCC----------C-----------cCCCCCHHHHHH
Confidence 9999999988753 2211 12333333333 4422211 0 012357899999
Q ss_pred HHHHHHh
Q 011770 238 ALILASM 244 (478)
Q Consensus 238 a~~~a~~ 244 (478)
.++.+++
T Consensus 364 ~il~~i~ 370 (406)
T PRK07424 364 QILKLAK 370 (406)
T ss_pred HHHHHHH
Confidence 9999987
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=120.45 Aligned_cols=198 Identities=23% Similarity=0.263 Sum_probs=143.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
|||.|+||||-+|++++++..++||+ |+++.|+++. ....+++..++.|+.|++++.+.+.+.|+||..-+...+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHe-VTAivRn~~K----~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~ 75 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHE-VTAIVRNASK----LAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGAS 75 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCe-eEEEEeChHh----ccccccceeecccccChhhhHhhhcCCceEEEeccCCCC
Confidence 58999999999999999999999999 9999998762 222378899999999999999999999999987664322
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~ 171 (478)
+.. .........+++..+..+++|++.++..+..+-.+. .--.+.|..|. ..|...+..+|.+= .
T Consensus 76 ~~~--------~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g--~rLvD~p~fP~----ey~~~A~~~ae~L~-~ 140 (211)
T COG2910 76 DND--------ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG--TRLVDTPDFPA----EYKPEALAQAEFLD-S 140 (211)
T ss_pred Chh--------HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC--ceeecCCCCch----hHHHHHHHHHHHHH-H
Confidence 221 122344677888999999999998877655432222 11224555554 67899999998543 2
Q ss_pred HcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 172 ~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
... ...++++-+-|+..|-||++.- ..+.|.-...... .--++|...|.|-|++.-++
T Consensus 141 Lr~-------~~~l~WTfvSPaa~f~PGerTg------~yrlggD~ll~n~--~G~SrIS~aDYAiA~lDe~E 198 (211)
T COG2910 141 LRA-------EKSLDWTFVSPAAFFEPGERTG------NYRLGGDQLLVNA--KGESRISYADYAIAVLDELE 198 (211)
T ss_pred Hhh-------ccCcceEEeCcHHhcCCccccC------ceEeccceEEEcC--CCceeeeHHHHHHHHHHHHh
Confidence 221 3459999999999999987641 1222332223322 22478999999999998877
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-14 Score=150.59 Aligned_cols=206 Identities=17% Similarity=0.212 Sum_probs=142.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
.++|+++||||++.||.+++++|.++|++ |++++|+....... ......+.++++|++|+++++++++ ++|
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD 81 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQ-VVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRID 81 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence 45789999999999999999999999998 99999875532111 1112356789999999998887764 489
Q ss_pred EEEEcccCCCC------chhhhchhhhhHhhhHHHHHHHHHHHHc----CCC-eEEEEeccceeeCCccccCCCCCCCCC
Q 011770 81 CVFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIEACLEF----GIQ-RLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 81 ~ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~-r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++||+|+.... ..+..+.+..+++|+.++.++.+++.+. +-. ++|++||.....+..
T Consensus 82 ~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~------------ 149 (520)
T PRK06484 82 VLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALP------------ 149 (520)
T ss_pred EEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCC------------
Confidence 99999986311 1233456788999999999999988764 333 899999976532211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHH--H-HHHHHcCCCCeeeCCCCcc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPR--I-VSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~--~-i~~~~~g~~~~~~g~g~~~ 226 (478)
. ...|+.+|...+.+++....+ + ...+++++++.|+.|-.+........ . ........ ..
T Consensus 150 -~---~~~Y~asKaal~~l~~~la~e-~---~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---------~~ 212 (520)
T PRK06484 150 -K---RTAYSASKAAVISLTRSLACE-W---AAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRI---------PL 212 (520)
T ss_pred -C---CchHHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcC---------CC
Confidence 0 257999999999988765432 1 14689999999998866642211000 0 00111100 01
Q ss_pred ccceeHHHHHHHHHHHHh
Q 011770 227 TDWIYVDNLVLALILASM 244 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~ 244 (478)
..+...+|+++++..++.
T Consensus 213 ~~~~~~~~va~~v~~l~~ 230 (520)
T PRK06484 213 GRLGRPEEIAEAVFFLAS 230 (520)
T ss_pred CCCcCHHHHHHHHHHHhC
Confidence 124567899999887765
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-14 Score=140.15 Aligned_cols=217 Identities=15% Similarity=0.069 Sum_probs=138.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccc--cc--cCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSH--LL--INHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~--~~--~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++++++||||++.||.+++++|.++| ++ |++++|+....... .. ....+.++.+|++|.++++++++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~-V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWH-VIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGR 80 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 36799999999999999999999999 88 99998865421110 11 12357788999999998877663
Q ss_pred CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHH----cC--CCeEEEEeccceeeCC---ccccCC-
Q 011770 78 GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLE----FG--IQRLVYVSTYNVVFGG---KEIVNG- 142 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~----~~--v~r~V~~SS~~v~~g~---~~~~~~- 142 (478)
++|++||+||..... .+..+.+..+++|+.|+..+.+++.. .+ ..++|++||...+... ....+.
T Consensus 81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~ 160 (314)
T TIGR01289 81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKAN 160 (314)
T ss_pred CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCccc
Confidence 589999999964221 12345577889999998888776654 32 3599999998764211 000000
Q ss_pred -----------------CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC-CCcH
Q 011770 143 -----------------NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE-ERHL 204 (478)
Q Consensus 143 -----------------~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~-~~~~ 204 (478)
.+..++.+ ...|+.||++...+.++...+ +. ...++.++.++||.|..... ....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y~~SK~a~~~~~~~la~~-~~--~~~gi~v~~v~PG~v~~T~l~~~~~ 233 (314)
T TIGR01289 161 LGDLSGLAAGFKAPIAMIDGKEFKG----AKAYKDSKVCNMLTVRELHRR-FH--DETGITFASLYPGCIADTGLFREHV 233 (314)
T ss_pred ccccccccccCCCcccccCCCCcch----hhhHHHhHHHHHHHHHHHHHH-hc--cCCCeEEEEecCCcccCCccccccc
Confidence 01111222 367999999988777665432 11 02579999999999964322 1111
Q ss_pred H---HHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 205 P---RIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 205 ~---~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
+ .+...+... . ...+...++.++.++.++.
T Consensus 234 ~~~~~~~~~~~~~----~------~~~~~~~~~~a~~l~~~~~ 266 (314)
T TIGR01289 234 PLFRTLFPPFQKY----I------TKGYVSEEEAGERLAQVVS 266 (314)
T ss_pred HHHHHHHHHHHHH----H------hccccchhhhhhhhHHhhc
Confidence 1 111111100 0 0124568889998888776
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-14 Score=139.42 Aligned_cols=196 Identities=14% Similarity=0.113 Sum_probs=134.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--c--CCCeEEEEecCCC--HHHHH---HHhcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--I--NHGVHCIQGDVVS--KIDVE---KAARG 78 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~--~~~v~~v~gDl~d--~~~l~---~~l~~ 78 (478)
.+++++||||||.||.+++++|.++|++ |++++|+.+..... .. . ...+..+.+|+++ .+.++ +.+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLN-LVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 4689999999999999999999999998 99999876432110 00 1 1346778899985 33333 33444
Q ss_pred --cCEEEEcccCCCC------chhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 79 --VDCVFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 79 --~D~ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
+|++||+||.... ..+.++.+..+++|+.|+.++.+++.. .+..++|++||...+..+.
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~--------- 201 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPS--------- 201 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCC---------
Confidence 5699999996532 112334567889999999999988764 4556899999986532110
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
.|. ...|+.||...+.+.+....+ + ...|++++++.|+.|-.+-.. .....
T Consensus 202 --~p~---~~~Y~aSKaal~~~~~~L~~E-l---~~~gI~V~~v~PG~v~T~~~~---------~~~~~----------- 252 (320)
T PLN02780 202 --DPL---YAVYAATKAYIDQFSRCLYVE-Y---KKSGIDVQCQVPLYVATKMAS---------IRRSS----------- 252 (320)
T ss_pred --Ccc---chHHHHHHHHHHHHHHHHHHH-H---hccCeEEEEEeeCceecCccc---------ccCCC-----------
Confidence 011 267999999999988776432 2 146899999999999665211 00110
Q ss_pred ccceeHHHHHHHHHHHHh
Q 011770 227 TDWIYVDNLVLALILASM 244 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~ 244 (478)
.-....+++|+.++.++.
T Consensus 253 ~~~~~p~~~A~~~~~~~~ 270 (320)
T PLN02780 253 FLVPSSDGYARAALRWVG 270 (320)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 012357889999888774
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-14 Score=135.01 Aligned_cols=202 Identities=13% Similarity=0.037 Sum_probs=135.3
Q ss_pred eEEEEcCCChhHHHHHHHHHH----cCCceEEEEecCCCCcccc--cc----cCCCeEEEEecCCCHHHHHHHhcC----
Q 011770 13 TFLVTGGLGHVGSALCLELVR----RGAYQVRAFDLRTNSPWSH--LL----INHGVHCIQGDVVSKIDVEKAARG---- 78 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~----~G~~~V~~l~r~~~~~~~~--~~----~~~~v~~v~gDl~d~~~l~~~l~~---- 78 (478)
.++||||+|.||.+++++|.+ .|++ |++++|+....... .. ....+.++.+|++|.++++++++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSV-LVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcE-EEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 7998 99998875421110 00 123578899999999988876642
Q ss_pred -------cCEEEEcccCCCC-ch------hhhchhhhhHhhhHHHHHHHHHHHHc-----C-CCeEEEEeccceeeCCcc
Q 011770 79 -------VDCVFHVASYGMS-GK------EMLQFGRVDEVNINGTCHVIEACLEF-----G-IQRLVYVSTYNVVFGGKE 138 (478)
Q Consensus 79 -------~D~ViHlAa~~~~-~~------~~~~~~~~~~vNv~gt~nll~aa~~~-----~-v~r~V~~SS~~v~~g~~~ 138 (478)
.|+|||+||.... .. ...+.+..+++|+.|+..+.+++.+. + -.++|++||...+.+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~-- 158 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPF-- 158 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCC--
Confidence 2599999996321 11 12345678899999998888776543 2 2479999997652110
Q ss_pred ccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-----HHHHHHHHc
Q 011770 139 IVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-----PRIVSLAKL 213 (478)
Q Consensus 139 ~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-----~~~i~~~~~ 213 (478)
| ....|+.||...+.+++....+ + ...+++++.+.|+.|-.+...... +.....+..
T Consensus 159 -----------~---~~~~Y~asKaal~~l~~~la~e-~---~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 220 (256)
T TIGR01500 159 -----------K---GWALYCAGKAARDMLFQVLALE-E---KNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQE 220 (256)
T ss_pred -----------C---CchHHHHHHHHHHHHHHHHHHH-h---cCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHH
Confidence 1 1257999999999999776432 1 247899999999998655211100 001111111
Q ss_pred CCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 214 GLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 214 g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.. ....+...+|+|++++.+++
T Consensus 221 ~~---------~~~~~~~p~eva~~~~~l~~ 242 (256)
T TIGR01500 221 LK---------AKGKLVDPKVSAQKLLSLLE 242 (256)
T ss_pred HH---------hcCCCCCHHHHHHHHHHHHh
Confidence 00 01125678999999998886
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=132.37 Aligned_cols=169 Identities=25% Similarity=0.276 Sum_probs=121.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCC-CeEEEEecCCCHHHHHHHhc--
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINH-GVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~-~v~~v~gDl~d~~~l~~~l~-- 77 (478)
++.+.+|.|+|||||.-||.+++.+|.++|.+ ++.+.|+......- ..... ++..+++|++|.++++++++
T Consensus 7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 7 MERLAGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCc-eEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHH
Confidence 45678899999999999999999999999998 77777765532111 11223 59999999999999987653
Q ss_pred -----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCC
Q 011770 78 -----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|++||.||+..... ...+....+++|+.|+..+.+++..+ +-.++|.+||+.-+.+
T Consensus 86 ~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~--------- 156 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMP--------- 156 (282)
T ss_pred HHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccC---------
Confidence 7899999999765322 22345668899999999988887654 4458999999865311
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEE-EEeCCce
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTC-AVRPAAI 195 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~-ilRp~~v 195 (478)
.|. .+.|+.||.+.+.+......+ +. ..+..+. ++-||.|
T Consensus 157 -~P~------~~~Y~ASK~Al~~f~etLR~E-l~---~~~~~i~i~V~PG~V 197 (282)
T KOG1205|consen 157 -LPF------RSIYSASKHALEGFFETLRQE-LI---PLGTIIIILVSPGPI 197 (282)
T ss_pred -CCc------ccccchHHHHHHHHHHHHHHH-hh---ccCceEEEEEecCce
Confidence 111 247999999999888655432 21 1222222 5777766
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=122.89 Aligned_cols=247 Identities=16% Similarity=0.041 Sum_probs=153.3
Q ss_pred CCCCeEEEEcCCChhHHHHHH-----HHHHcC----CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCc
Q 011770 9 IEGKTFLVTGGLGHVGSALCL-----ELVRRG----AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~-----~L~~~G----~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
-+.++.++-+++|+|+.+|.. ++-+.+ |+ |++++|++... ++++-+.|..- +--.|
T Consensus 10 ~~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~-vtv~sR~pg~~--------ritw~el~~~G------ip~sc 74 (315)
T KOG3019|consen 10 GKSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHA-VTVLSRSPGKA--------RITWPELDFPG------IPISC 74 (315)
T ss_pred CccccCCCCccccchhccccCcccccccCCCCcccccc-eEEEecCCCCc--------ccccchhcCCC------Cceeh
Confidence 345678899999999998877 443334 77 99999887632 22332222211 11135
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|.++++++.....+ +..-.+++...-+..|..+.++..+.- .+.+|.+|.+++ |-......++|+.+....
T Consensus 75 ~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~-y~pS~s~eY~e~~~~qgf-- 151 (315)
T KOG3019|consen 75 VAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAV-YVPSESQEYSEKIVHQGF-- 151 (315)
T ss_pred HHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEE-eccccccccccccccCCh--
Confidence 55666655321111 111122333344555777888887664 457999999887 444444556676654432
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
+..++-=.+=|...+. +....+++++|.+.|.|.+... +..++--++-|.- -..|+|.+.+.|||++
T Consensus 152 --d~~srL~l~WE~aA~~---------~~~~~r~~~iR~GvVlG~gGGa-~~~M~lpF~~g~G-GPlGsG~Q~fpWIHv~ 218 (315)
T KOG3019|consen 152 --DILSRLCLEWEGAALK---------ANKDVRVALIRIGVVLGKGGGA-LAMMILPFQMGAG-GPLGSGQQWFPWIHVD 218 (315)
T ss_pred --HHHHHHHHHHHHHhhc---------cCcceeEEEEEEeEEEecCCcc-hhhhhhhhhhccC-CcCCCCCeeeeeeehH
Confidence 2222211122222222 2456899999999999997653 2222222222221 1368999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHH
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHA 299 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~ 299 (478)
|++..+..|+++ +...| +.|-..+++.+..||.+.+.++++.+ ..+.+|..++
T Consensus 219 DL~~li~~ale~-----------~~v~G-ViNgvAP~~~~n~Ef~q~lg~aL~Rp-~~~pvP~fvv 271 (315)
T KOG3019|consen 219 DLVNLIYEALEN-----------PSVKG-VINGVAPNPVRNGEFCQQLGSALSRP-SWLPVPDFVV 271 (315)
T ss_pred HHHHHHHHHHhc-----------CCCCc-eecccCCCccchHHHHHHHHHHhCCC-cccCCcHHHH
Confidence 999999999983 33334 78888899999999999999999976 3456665543
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=133.09 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=122.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC---------ccc---ccc--cCCCeEEEEecCCCHHH
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS---------PWS---HLL--INHGVHCIQGDVVSKID 71 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~---------~~~---~~~--~~~~v~~v~gDl~d~~~ 71 (478)
|.++++|+++||||++.||.+++++|++.|++ |++++|+... ... ... ....+.++++|++|+++
T Consensus 3 ~~~l~~k~~lITGgs~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~ 81 (305)
T PRK08303 3 MKPLRGKVALVAGATRGAGRGIAVELGAAGAT-VYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQ 81 (305)
T ss_pred CcCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 34577899999999999999999999999998 9999987421 000 000 12346789999999999
Q ss_pred HHHHhc-------CcCEEEEcc-cCCC-----Cc---hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccc
Q 011770 72 VEKAAR-------GVDCVFHVA-SYGM-----SG---KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYN 131 (478)
Q Consensus 72 l~~~l~-------~~D~ViHlA-a~~~-----~~---~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~ 131 (478)
++++++ ++|++||+| +... .. ....+....+++|+.++..+.+++.+. +-.++|++||..
T Consensus 82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~ 161 (305)
T PRK08303 82 VRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGT 161 (305)
T ss_pred HHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcc
Confidence 887764 579999999 6321 11 112334567789999998888877653 235899999864
Q ss_pred eeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 132 v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
..++.. +. + ....|+.||...+.+.+....+ + +..|+++..+.|+.|-.+
T Consensus 162 ~~~~~~---------~~-~---~~~~Y~asKaal~~lt~~La~e-l---~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 162 AEYNAT---------HY-R---LSVFYDLAKTSVNRLAFSLAHE-L---APHGATAVALTPGWLRSE 211 (305)
T ss_pred ccccCc---------CC-C---CcchhHHHHHHHHHHHHHHHHH-h---hhcCcEEEEecCCccccH
Confidence 322110 00 0 1246999999999998765432 2 246899999999988554
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=124.58 Aligned_cols=203 Identities=18% Similarity=0.191 Sum_probs=143.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc---cCCCeEEEEecCCCHHHHHHHhc------
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL---INHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~---~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+..++.||||||++-+|+.++.+++++|.. +++.|........... ....+..+.+|++|.+++.+..+
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~-~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAK-LVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCe-EEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999998 9999988765322111 11358899999999998877654
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||.||+.... .+.++-+..+++|+.|.....++. .+.+-.++|.++|..-+++...
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~g---------- 182 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAG---------- 182 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCcc----------
Confidence 589999999974322 233445778899999977766655 4445569999999876544322
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
..+|+.||.++.-....... ++...+..|++++.+-|+.+=-. . -.+..+ -.....
T Consensus 183 ------l~~YcaSK~a~vGfhesL~~-EL~~~~~~~IktTlv~P~~i~Tg----m--------f~~~~~-----~~~l~P 238 (300)
T KOG1201|consen 183 ------LADYCASKFAAVGFHESLSM-ELRALGKDGIKTTLVCPYFINTG----M--------FDGATP-----FPTLAP 238 (300)
T ss_pred ------chhhhhhHHHHHHHHHHHHH-HHHhcCCCCeeEEEEeeeecccc----c--------cCCCCC-----CccccC
Confidence 25699999998665543321 12222367899999999877311 1 111111 124456
Q ss_pred ceeHHHHHHHHHHHHh
Q 011770 229 WIYVDNLVLALILASM 244 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~ 244 (478)
.+..+.+|+.++.++.
T Consensus 239 ~L~p~~va~~Iv~ai~ 254 (300)
T KOG1201|consen 239 LLEPEYVAKRIVEAIL 254 (300)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7889999999999987
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-13 Score=121.47 Aligned_cols=198 Identities=21% Similarity=0.196 Sum_probs=146.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
-.+.++.|+.||.|+++++.....++. |..+.++.... -.......++++++|....+-+...+.++..|+-+++-..
T Consensus 52 ~e~tlvlggnpfsgs~vlk~A~~vv~s-vgilsen~~k~-~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ggfg 129 (283)
T KOG4288|consen 52 VEWTLVLGGNPFSGSEVLKNATNVVHS-VGILSENENKQ-TLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGGFG 129 (283)
T ss_pred HHHHhhhcCCCcchHHHHHHHHhhcee-eeEeecccCcc-hhhCCCcccchhhccccccCcchhhhcCCcccHHHhcCcc
Confidence 357899999999999999999999999 99998875522 1233456688899999887777888889999999987421
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
+...+..+|-....+-.+++.+.|+++|+|+|-.. ||-. |+.| ..|-.+|.+||..+.
T Consensus 130 ------n~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d--~~~~---------~~i~-----rGY~~gKR~AE~Ell 187 (283)
T KOG4288|consen 130 ------NIILMDRINGTANINAVKAAAKAGVPRFVYISAHD--FGLP---------PLIP-----RGYIEGKREAEAELL 187 (283)
T ss_pred ------chHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh--cCCC---------Cccc-----hhhhccchHHHHHHH
Confidence 23456678888888899999999999999999754 2211 1222 469999999999887
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCCC----cH---HHHHHHHHcCCC-----CeeeCCCCccccceeHHHHHHH
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER----HL---PRIVSLAKLGLV-----PFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~----~~---~~~i~~~~~g~~-----~~~~g~g~~~~~~v~V~Dva~a 238 (478)
.- .+++-++|||+.+||...-. .+ ...+.++.++.. +...| ......+.++++|.+
T Consensus 188 ~~----------~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg--~l~~ppvnve~VA~a 255 (283)
T KOG4288|consen 188 KK----------FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLG--PLLAPPVNVESVALA 255 (283)
T ss_pred Hh----------cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccc--cccCCCcCHHHHHHH
Confidence 63 45778999999999985421 11 112222222221 22333 467889999999999
Q ss_pred HHHHHh
Q 011770 239 LILASM 244 (478)
Q Consensus 239 ~~~a~~ 244 (478)
.+.|++
T Consensus 256 al~ai~ 261 (283)
T KOG4288|consen 256 ALKAIE 261 (283)
T ss_pred HHHhcc
Confidence 999887
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-13 Score=118.56 Aligned_cols=146 Identities=25% Similarity=0.266 Sum_probs=111.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecC--CCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR--TNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~--~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
|+++||||+|-||..++++|+++|...|++++|+ .+..... .....++.++++|+++.++++++++ .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999999976547888777 1111100 1123678999999999999888775 5
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
+|++||+|+...... ..++....+++|+.+...+.+++...+-.++|++||.....+. | .
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------------~---~ 144 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVRGS-------------P---G 144 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTSSS-------------T---T
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhccCC-------------C---C
Confidence 799999999754322 2345578889999999999999998666799999998763221 1 1
Q ss_pred CCchHhhHHHHHHHHHHHc
Q 011770 155 VDSYGRSKSVAEQLVLKSN 173 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~ 173 (478)
...|+.+|...+.+++..+
T Consensus 145 ~~~Y~askaal~~~~~~la 163 (167)
T PF00106_consen 145 MSAYSASKAALRGLTQSLA 163 (167)
T ss_dssp BHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHH
Confidence 2579999999999987664
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=122.09 Aligned_cols=167 Identities=12% Similarity=0.039 Sum_probs=118.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc----ccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL----LINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~----~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++++++||||++-||.+++++|.++|++ |++++|+........ .....+..+.+|++|.++++++++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999 999988765321110 112346778899999998877653
Q ss_pred -CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHH----cC-CCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLE----FG-IQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~----~~-v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+||..... .+..+....+++|+.++..+.+.+.+ .+ -..+|++||....
T Consensus 82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------------- 148 (227)
T PRK08862 82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH------------- 148 (227)
T ss_pred CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-------------
Confidence 589999999743221 12223345667888887777665543 22 3589999985421
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
+. ...|+.||...+.+.+....+ + ..+++++..+.|+.+-.+.
T Consensus 149 ~~------~~~Y~asKaal~~~~~~la~e-l---~~~~Irvn~v~PG~i~t~~ 191 (227)
T PRK08862 149 QD------LTGVESSNALVSGFTHSWAKE-L---TPFNIRVGGVVPSIFSANG 191 (227)
T ss_pred CC------cchhHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEecCcCcCCC
Confidence 10 146999999999988765432 1 1468999999999987763
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=129.12 Aligned_cols=176 Identities=15% Similarity=0.034 Sum_probs=118.2
Q ss_pred EEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccc--cc--cCCCeEEEEecCCCHHHHHHHhc-------CcCEE
Q 011770 15 LVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSH--LL--INHGVHCIQGDVVSKIDVEKAAR-------GVDCV 82 (478)
Q Consensus 15 LVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~--~~--~~~~v~~v~gDl~d~~~l~~~l~-------~~D~V 82 (478)
+||||++.||.+++++|.++| ++ |++.+|+....... .. ....+.++++|++|.++++++++ ++|++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l 79 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWH-VVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL 79 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 699999999999999999999 88 99998765421100 01 12357788999999999877664 47999
Q ss_pred EEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHH----cC--CCeEEEEeccceeeCC-----ccccCCC---
Q 011770 83 FHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLE----FG--IQRLVYVSTYNVVFGG-----KEIVNGN--- 143 (478)
Q Consensus 83 iHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~----~~--v~r~V~~SS~~v~~g~-----~~~~~~~--- 143 (478)
||+||..... .+..+.+..+++|+.|+.++.+++.+ .+ ..++|++||...+.+. .+....+
T Consensus 80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~ 159 (308)
T PLN00015 80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 159 (308)
T ss_pred EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhh
Confidence 9999964221 12345567889999998888776554 33 3699999998653210 0000000
Q ss_pred --------C-------CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 144 --------E-------SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 144 --------E-------~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
+ ..++. ....|+.||++.+...+....+. . ...|+.++++.||.|...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~----~~~aY~~SK~a~~~~~~~la~~~-~--~~~gi~v~~v~PG~v~~t 222 (308)
T PLN00015 160 GLAGGLNGLNSSAMIDGGEFD----GAKAYKDSKVCNMLTMQEFHRRY-H--EETGITFASLYPGCIATT 222 (308)
T ss_pred hhhcccCCccchhhccccCCc----HHHHHhHhHHHHHHHHHHHHHhh-c--ccCCeEEEEecCCcccCc
Confidence 0 00111 23679999999777666554321 1 025899999999999643
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=123.41 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=129.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--c-CCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--I-NHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~-~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
|+++||||++-||.+++++|. +|++ |++++|+....... .. . ...+.++++|++|.++++++++ ++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~-Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGED-VVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCE-EEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999998 5988 99998875432110 01 1 1247789999999998887654 57
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcC-CCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|++||+||...... ...+.....++|+.+..+++.++ .+.+ -.++|++||.....+. |
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~-------------~ 145 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRAR-------------R 145 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCC-------------c
Confidence 99999999643221 11223345678888887665554 3332 3589999997642111 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
....|+.||...+.+.+....+ + +..+++++.+.|+.|..+... +... .+ -..
T Consensus 146 ---~~~~Y~asKaa~~~~~~~la~e-l---~~~~I~v~~v~PG~v~T~~~~------------~~~~----~~----~~~ 198 (246)
T PRK05599 146 ---ANYVYGSTKAGLDAFCQGLADS-L---HGSHVRLIIARPGFVIGSMTT------------GMKP----AP----MSV 198 (246)
T ss_pred ---CCcchhhHHHHHHHHHHHHHHH-h---cCCCceEEEecCCcccchhhc------------CCCC----CC----CCC
Confidence 1257999999999888766432 2 246899999999999765211 1100 00 013
Q ss_pred eHHHHHHHHHHHHh
Q 011770 231 YVDNLVLALILASM 244 (478)
Q Consensus 231 ~V~Dva~a~~~a~~ 244 (478)
..+|+|++++.++.
T Consensus 199 ~pe~~a~~~~~~~~ 212 (246)
T PRK05599 199 YPRDVAAAVVSAIT 212 (246)
T ss_pred CHHHHHHHHHHHHh
Confidence 57999999999887
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-11 Score=120.50 Aligned_cols=226 Identities=10% Similarity=0.015 Sum_probs=143.2
Q ss_pred CCCCCCeEEEEcC--CChhHHHHHHHHHHcCCceEEEEecCCCCc------cc--c----c-cc----CCCeEEEEecC-
Q 011770 7 EGIEGKTFLVTGG--LGHVGSALCLELVRRGAYQVRAFDLRTNSP------WS--H----L-LI----NHGVHCIQGDV- 66 (478)
Q Consensus 7 ~~~~~~~ILVTGa--tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~------~~--~----~-~~----~~~v~~v~gDl- 66 (478)
+.+++|+++|||| +.-||.++++.|.+.|.+ |++ .|+.+.. .. . . .. ......+.+|+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~-Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 82 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAE-ILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV 82 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCE-EEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence 3478999999999 799999999999999998 887 4432210 00 0 0 00 01145678888
Q ss_pred -CCHH------------------HHHHHhc-------CcCEEEEcccCCCC------chhhhchhhhhHhhhHHHHHHHH
Q 011770 67 -VSKI------------------DVEKAAR-------GVDCVFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIE 114 (478)
Q Consensus 67 -~d~~------------------~l~~~l~-------~~D~ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~ 114 (478)
.+.+ +++++++ ++|++||+||.+.. ..+..+....+++|+.++..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~ 162 (303)
T PLN02730 83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQ 162 (303)
T ss_pred cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 3222 5555443 57999999974321 12345678889999999999998
Q ss_pred HHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeC
Q 011770 115 ACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRP 192 (478)
Q Consensus 115 aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp 192 (478)
++...= -.++|++||.....+. |. ....|+.||...+.+.+....+ +.+ .+|+++..+-|
T Consensus 163 ~~~p~m~~~G~II~isS~a~~~~~-------------p~--~~~~Y~asKaAl~~l~~~la~E-l~~--~~gIrVn~V~P 224 (303)
T PLN02730 163 HFGPIMNPGGASISLTYIASERII-------------PG--YGGGMSSAKAALESDTRVLAFE-AGR--KYKIRVNTISA 224 (303)
T ss_pred HHHHHHhcCCEEEEEechhhcCCC-------------CC--CchhhHHHHHHHHHHHHHHHHH-hCc--CCCeEEEEEee
Confidence 877641 1589999997642110 10 0136999999999999776542 110 25899999999
Q ss_pred CceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 193 AAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 193 ~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+.|-.+-.... .+..........+ ...+...+|++.+++.++.. ......|+.+.+.+|.
T Consensus 225 G~v~T~~~~~~~~~~~~~~~~~~~~p---------l~r~~~peevA~~~~fLaS~---------~a~~itG~~l~vdGG~ 286 (303)
T PLN02730 225 GPLGSRAAKAIGFIDDMIEYSYANAP---------LQKELTADEVGNAAAFLASP---------LASAITGATIYVDNGL 286 (303)
T ss_pred CCccCchhhcccccHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCc---------cccCccCCEEEECCCc
Confidence 99876632210 1111111111111 11245689999999888752 1224567777776553
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.6e-12 Score=110.09 Aligned_cols=223 Identities=22% Similarity=0.221 Sum_probs=156.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+.+.+.++||||+.-||++++..|.+.|++ |.+.|++........ ....+...+.+|+.+..++...++
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Gar-v~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g 89 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGAR-VAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLG 89 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCcE-EEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcC
Confidence 356688999999999999999999999999 999998776432211 122345668999999888777554
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CC--CeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GI--QRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v--~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
.++++++||++.... ..+++++..+.+|+.|+..+.+++.+. +. -++|.+||+----|.-...++.-+
T Consensus 90 ~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQtnYAAs-- 167 (256)
T KOG1200|consen 90 TPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAAS-- 167 (256)
T ss_pred CCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccchhhhhh--
Confidence 479999999986443 356788999999999999998888765 22 289999997321121111110000
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
....-|.||.+|.++. ..++++.++-|+.|--|-....-+.+.+.+....+.-.+|+
T Consensus 168 ------K~GvIgftktaArEla------------~knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~----- 224 (256)
T KOG1200|consen 168 ------KGGVIGFTKTAARELA------------RKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGE----- 224 (256)
T ss_pred ------cCceeeeeHHHHHHHh------------hcCceEeEeccccccChhhhhcCHHHHHHHHccCCccccCC-----
Confidence 0022345555665443 46899999999999999777677788888888777766676
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.+|+|..+..++... ..-..|..+.+.+|
T Consensus 225 ----~EevA~~V~fLAS~~---------ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 225 ----AEEVANLVLFLASDA---------SSYITGTTLEVTGG 253 (256)
T ss_pred ----HHHHHHHHHHHhccc---------cccccceeEEEecc
Confidence 458888877665411 12355777777665
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=121.62 Aligned_cols=206 Identities=17% Similarity=0.115 Sum_probs=135.2
Q ss_pred HHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc----CcCEEEEcccCCCCchhhhchhhhh
Q 011770 27 LCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR----GVDCVFHVASYGMSGKEMLQFGRVD 102 (478)
Q Consensus 27 Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~----~~D~ViHlAa~~~~~~~~~~~~~~~ 102 (478)
++++|+++|++ |++++|+.... ...+++++|++|.+++.++++ ++|+|||+||... ..+.+..+
T Consensus 1 ~a~~l~~~G~~-Vv~~~r~~~~~-------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~~~~ 68 (241)
T PRK12428 1 TARLLRFLGAR-VIGVDRREPGM-------TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVELVA 68 (241)
T ss_pred ChHHHHhCCCE-EEEEeCCcchh-------hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHHHhh
Confidence 47889999998 99999876521 124578999999999998876 5899999998642 12467789
Q ss_pred HhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCC----------------CCCCCCCccCCchHhhHHH
Q 011770 103 EVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNES----------------LPYFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 103 ~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~----------------~p~~p~~~~~~~Y~~sK~~ 164 (478)
++|+.++.++++++.+. .-.++|++||...+ +.....+..|. .|. ...++|+.||..
T Consensus 69 ~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~sK~a 143 (241)
T PRK12428 69 RVNFLGLRHLTEALLPRMAPGGAIVNVASLAGA-EWPQRLELHKALAATASFDEGAAWLAAHPV----ALATGYQLSKEA 143 (241)
T ss_pred hhchHHHHHHHHHHHHhccCCcEEEEeCcHHhh-ccccchHHHHhhhccchHHHHHHhhhccCC----CcccHHHHHHHH
Confidence 99999999999999864 22599999999874 21111111110 111 123689999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHH-HHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHH
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIV-SLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS 243 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i-~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~ 243 (478)
.+.+.+.....++ ..+|+++.+++|+.+.++......+..- ....... .....+...+|+++++..++
T Consensus 144 ~~~~~~~la~~e~---~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~--------~~~~~~~~pe~va~~~~~l~ 212 (241)
T PRK12428 144 LILWTMRQAQPWF---GARGIRVNCVAPGPVFTPILGDFRSMLGQERVDSDA--------KRMGRPATADEQAAVLVFLC 212 (241)
T ss_pred HHHHHHHHHHHhh---hccCeEEEEeecCCccCcccccchhhhhhHhhhhcc--------cccCCCCCHHHHHHHHHHHc
Confidence 9998876651112 1468999999999999885332111100 0011100 01123456899999998876
Q ss_pred hcccCCCCCCCCCCCCCCceEEecCC
Q 011770 244 MGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 244 ~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.. ......|+...+.+|
T Consensus 213 s~---------~~~~~~G~~i~vdgg 229 (241)
T PRK12428 213 SD---------AARWINGVNLPVDGG 229 (241)
T ss_pred Ch---------hhcCccCcEEEecCc
Confidence 41 112345666666554
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=122.56 Aligned_cols=207 Identities=22% Similarity=0.231 Sum_probs=128.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHH-Hhc----
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEK-AAR---- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~-~l~---- 77 (478)
+.+.++++|+|+||||.+|+.+++.|+++|+. |+++.|+........ ....+.+.+..|.....+... ..+
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~-vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~ 152 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFS-VRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPK 152 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCe-eeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccc
Confidence 44567789999999999999999999999998 999988766432221 124456666666655444333 222
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCc
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS 157 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~ 157 (478)
+..+++-|++-. +. .+ +-..-+.+...|+.|+++||+..|++|+|++||++. ... ..++..... ...
T Consensus 153 ~~~~v~~~~ggr-p~-~e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~---~~~------~~~~~~~~~-~~~ 219 (411)
T KOG1203|consen 153 GVVIVIKGAGGR-PE-EE-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGG---TKF------NQPPNILLL-NGL 219 (411)
T ss_pred cceeEEecccCC-CC-cc-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecC---ccc------CCCchhhhh-hhh
Confidence 234666666532 11 11 233445788999999999999999999999998764 111 111111100 123
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
+-.+|..+|+.+. ..|++++|+||+...-..... .+ ..........-+++. --.+.-.|+|+
T Consensus 220 ~~~~k~~~e~~~~-----------~Sgl~ytiIR~g~~~~~~~~~-~~----~~~~~~~~~~~~~~~--~~~i~r~~vae 281 (411)
T KOG1203|consen 220 VLKAKLKAEKFLQ-----------DSGLPYTIIRPGGLEQDTGGQ-RE----VVVDDEKELLTVDGG--AYSISRLDVAE 281 (411)
T ss_pred hhHHHHhHHHHHH-----------hcCCCcEEEeccccccCCCCc-ce----ecccCcccccccccc--ceeeehhhHHH
Confidence 5588899998886 368999999999765432111 00 000011111111111 13456678888
Q ss_pred HHHHHHh
Q 011770 238 ALILASM 244 (478)
Q Consensus 238 a~~~a~~ 244 (478)
..+.++.
T Consensus 282 l~~~all 288 (411)
T KOG1203|consen 282 LVAKALL 288 (411)
T ss_pred HHHHHHh
Confidence 8887776
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.8e-12 Score=113.42 Aligned_cols=157 Identities=22% Similarity=0.282 Sum_probs=112.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC-Ccccc------cccCCCeEEEEecCCCHHHHHHHhcC-------
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN-SPWSH------LLINHGVHCIQGDVVSKIDVEKAARG------- 78 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~-~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~~------- 78 (478)
+++||||+|-||..+++.|.++|..+|+++.|+.. ..... ......+.++++|++|++++.++++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 68999999999999999999999877999998832 11100 11235688999999999999998863
Q ss_pred cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 79 VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
+|.|||+|+..... .+..+.......-+.|+.++.++.....++.+|.+||.+...|+...
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~gq--------------- 146 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGPGQ--------------- 146 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-TTB---------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCcch---------------
Confidence 58999999964322 23334566677889999999999999999999999999886665431
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCC
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPA 193 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~ 193 (478)
..|+..-...|.+..... ..|.+++++.-+
T Consensus 147 -~~YaaAN~~lda~a~~~~--------~~g~~~~sI~wg 176 (181)
T PF08659_consen 147 -SAYAAANAFLDALARQRR--------SRGLPAVSINWG 176 (181)
T ss_dssp -HHHHHHHHHHHHHHHHHH--------HTTSEEEEEEE-
T ss_pred -HhHHHHHHHHHHHHHHHH--------hCCCCEEEEEcc
Confidence 579999999998887654 357788877654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=117.02 Aligned_cols=166 Identities=25% Similarity=0.283 Sum_probs=121.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc-cc--ccccC----CCeEEEEecCCC-HHHHHHHhc---
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP-WS--HLLIN----HGVHCIQGDVVS-KIDVEKAAR--- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~-~~--~~~~~----~~v~~v~gDl~d-~~~l~~~l~--- 77 (478)
+++++|+||||++-||.++++.|.++|+. |++..++.... .. ..... ..+.+..+|+++ .++++.+++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~ 81 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGAR-VVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAE 81 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999998 88887775531 00 11112 357788899998 887776654
Q ss_pred ----CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHcCCC--eEEEEeccceeeCCccccCCCCCC
Q 011770 78 ----GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEFGIQ--RLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~--r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+|+.... .....+.+..+++|+.|...+.+++... .+ ++|++||.... .....
T Consensus 82 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~-~~~~~Iv~isS~~~~-~~~~~------- 152 (251)
T COG1028 82 EEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPL-MKKQRIVNISSVAGL-GGPPG------- 152 (251)
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHh-hhhCeEEEECCchhc-CCCCC-------
Confidence 48999999997532 1233567788999999999988844432 23 89999998652 11110
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCcee
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIY 196 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vy 196 (478)
...|+.||...+.+...... ++. ..|+++..+-|+.+-
T Consensus 153 --------~~~Y~~sK~al~~~~~~l~~-e~~---~~gi~v~~v~PG~~~ 190 (251)
T COG1028 153 --------QAAYAASKAALIGLTKALAL-ELA---PRGIRVNAVAPGYID 190 (251)
T ss_pred --------cchHHHHHHHHHHHHHHHHH-HHh---hhCcEEEEEEeccCC
Confidence 15799999999998877652 221 468999999999554
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=105.86 Aligned_cols=161 Identities=18% Similarity=0.138 Sum_probs=125.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
..|.||..+|.||||-.|+.|++++++.+- ..|+++.|+... .......+..+..|....+++...++++|+.|.+
T Consensus 14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~---d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~Fca 90 (238)
T KOG4039|consen 14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELP---DPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCA 90 (238)
T ss_pred HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCC---CccccceeeeEEechHHHHHHHhhhcCCceEEEe
Confidence 357789999999999999999999999863 459999988542 2234456778889999889999999999999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
-|-+.... -.+-.+++.-.-...+.++|++.|+++||.+||..+ + -+ .+-.|-..|-+.
T Consensus 91 LgTTRgka---GadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GA---d-------~s--------SrFlY~k~KGEv 149 (238)
T KOG4039|consen 91 LGTTRGKA---GADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGA---D-------PS--------SRFLYMKMKGEV 149 (238)
T ss_pred eccccccc---ccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCC---C-------cc--------cceeeeeccchh
Confidence 87532211 234566777777788999999999999999999865 1 11 124699999999
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE 201 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~ 201 (478)
|+-+.+..- -+++|+||+.+.|....
T Consensus 150 E~~v~eL~F----------~~~~i~RPG~ll~~R~e 175 (238)
T KOG4039|consen 150 ERDVIELDF----------KHIIILRPGPLLGERTE 175 (238)
T ss_pred hhhhhhccc----------cEEEEecCcceeccccc
Confidence 998876532 25899999999998754
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=116.98 Aligned_cols=186 Identities=24% Similarity=0.118 Sum_probs=131.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
..+.+++++|||||.-||.+.+++|..+|.+ |+...|+...... .......+.++++|++|.+++.++.+
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~-Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~ 109 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAH-VVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFK 109 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3466789999999999999999999999988 9999888632111 11234567889999999999988765
Q ss_pred ----CcCEEEEcccCCCCchh--hhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 ----GVDCVFHVASYGMSGKE--MLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~~--~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
..|+.|+.||+...... .+..+..+.+|..|...+.+... +....|+|++||..-....+......|...
T Consensus 110 ~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~~~~~~ 189 (314)
T KOG1208|consen 110 KKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAK 189 (314)
T ss_pred hcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhccchhcc
Confidence 46999999997654442 22357788999999777666544 444469999999753000111111222222
Q ss_pred -CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC
Q 011770 148 -YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER 202 (478)
Q Consensus 148 -~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~ 202 (478)
+... ..|+.||.+......+..++. ..|+.+..+.||.+..++-.+
T Consensus 190 ~~~~~----~~Y~~SKla~~l~~~eL~k~l-----~~~V~~~~~hPG~v~t~~l~r 236 (314)
T KOG1208|consen 190 LYSSD----AAYALSKLANVLLANELAKRL-----KKGVTTYSVHPGVVKTTGLSR 236 (314)
T ss_pred Cccch----hHHHHhHHHHHHHHHHHHHHh-----hcCceEEEECCCcccccceec
Confidence 2221 259999999988888776542 238999999999999886544
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-11 Score=116.01 Aligned_cols=234 Identities=20% Similarity=0.140 Sum_probs=152.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-------ccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-------LINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-------~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
.++.+|.++||||+.-||++++++|.+.|.+ |++.+|+.+...... .....+..+.+|+++.++.+++++
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~-v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~ 82 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAK-VVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA 82 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999 999998866321111 113458889999998877666543
Q ss_pred ------CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHH-HHHHHHHHHHc----CCCeEEEEeccceeeCCccccC
Q 011770 78 ------GVDCVFHVASYGMSG-----KEMLQFGRVDEVNING-TCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 78 ------~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~g-t~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~ 141 (478)
++|++|+.|+..... .+.+.++..+++|+.| +.++..++..+ +-..++++||...+.....
T Consensus 83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~--- 159 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPG--- 159 (270)
T ss_pred HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC---
Confidence 589999999965432 2455678899999995 66666666544 3446888888754211110
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeee
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~ 220 (478)
. ...|+.||...+++.+..+.+. ..+|+++.++-|+.|..+.... ..........+.. ..
T Consensus 160 -------~-----~~~Y~~sK~al~~ltr~lA~El----~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~---~~ 220 (270)
T KOG0725|consen 160 -------S-----GVAYGVSKAALLQLTRSLAKEL----AKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEAT---DS 220 (270)
T ss_pred -------C-----cccchhHHHHHHHHHHHHHHHH----hhcCcEEEEeecCcEeCCccccccccchhhHHhhhh---cc
Confidence 0 1469999999999998765422 2589999999999999885211 1110011111110 00
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
......-.+.-.+|++.++...+... ..-..|+...+.+|..+
T Consensus 221 ~~~~p~gr~g~~~eva~~~~fla~~~---------asyitG~~i~vdgG~~~ 263 (270)
T KOG0725|consen 221 KGAVPLGRVGTPEEVAEAAAFLASDD---------ASYITGQTIIVDGGFTV 263 (270)
T ss_pred ccccccCCccCHHHHHHhHHhhcCcc---------cccccCCEEEEeCCEEe
Confidence 00001123556789999887766420 11355666666655443
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-12 Score=119.20 Aligned_cols=213 Identities=19% Similarity=0.182 Sum_probs=148.4
Q ss_pred cCC--ChhHHHHHHHHHHcCCceEEEEecCCCCc---ccccccCCCeEEEEecCCCHHHHHHHh--------cCcCEEEE
Q 011770 18 GGL--GHVGSALCLELVRRGAYQVRAFDLRTNSP---WSHLLINHGVHCIQGDVVSKIDVEKAA--------RGVDCVFH 84 (478)
Q Consensus 18 Gat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~---~~~~~~~~~v~~v~gDl~d~~~l~~~l--------~~~D~ViH 84 (478)
|++ +-||.+++++|+++|++ |++.+|+.... ........+.+++++|++|++++++++ .++|++||
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~-V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~ 79 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGAN-VILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVN 79 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEE-EEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence 666 99999999999999999 99999887631 111112233557999999999888774 35799999
Q ss_pred cccCCCC----ch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 85 VASYGMS----GK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 85 lAa~~~~----~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
+|+.... .+ ...+....+++|+.++..+.+++.+. .-.++|++||..... . .|.
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~---~----------~~~--- 143 (241)
T PF13561_consen 80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR---P----------MPG--- 143 (241)
T ss_dssp EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS---B----------STT---
T ss_pred cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc---c----------Ccc---
Confidence 9997553 11 23456788899999999999988653 124799999875411 0 011
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCC-CcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNR-KCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~-~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.+|...|.+++....+. +. +|+++.++.|+.+-.+.... ..+.+........+. ..+..
T Consensus 144 ~~~y~~sKaal~~l~r~lA~el----~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl---------~r~~~ 210 (241)
T PF13561_consen 144 YSAYSASKAALEGLTRSLAKEL----APKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPL---------GRLGT 210 (241)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH----GGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTT---------SSHBE
T ss_pred chhhHHHHHHHHHHHHHHHHHh----ccccCeeeeeecccceeccchhccccccchhhhhhhhhcc---------CCCcC
Confidence 2579999999999997764321 24 79999999999997663211 123344444443332 23557
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.+|+|+++..++.. ......|++..+.+|
T Consensus 211 ~~evA~~v~fL~s~---------~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 211 PEEVANAVLFLASD---------AASYITGQVIPVDGG 239 (241)
T ss_dssp HHHHHHHHHHHHSG---------GGTTGTSEEEEESTT
T ss_pred HHHHHHHHHHHhCc---------cccCccCCeEEECCC
Confidence 89999999988762 122467888887665
|
... |
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-12 Score=107.75 Aligned_cols=209 Identities=19% Similarity=0.167 Sum_probs=144.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCC-eEEEEecCCCHHHHHHHhcC---cCEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG-VHCIQGDVVSKIDVEKAARG---VDCVF 83 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~-v~~v~gDl~d~~~l~~~l~~---~D~Vi 83 (478)
.+.++.|+|||+.--||+.++.+|.+.|.+ |+++.|.+..........+. ++.+++|+.+.+.+.+.+.. +|-.+
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~-ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLV 82 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQ-VIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLV 82 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCE-EEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhh
Confidence 467899999999999999999999999999 99999886633222223333 88999999999999888864 69999
Q ss_pred EcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CC-CeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 84 HVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GI-QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 84 HlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v-~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
+.||.....+ .+.+.+..+++|+.+..++.+...+. ++ ..+|.+||.+.. .|.+.
T Consensus 83 NNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~---------------R~~~n- 146 (245)
T KOG1207|consen 83 NNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI---------------RPLDN- 146 (245)
T ss_pred ccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc---------------cccCC-
Confidence 9999643222 34566788899999998888874443 32 258999997652 12222
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
.+.|+.||.+.+++.+..+- ++ +...+++..+.|..|.-........ +-.+++.... .-...-|.-|+.
T Consensus 147 HtvYcatKaALDmlTk~lAl-EL---Gp~kIRVNsVNPTVVmT~MG~dnWS---DP~K~k~mL~----riPl~rFaEV~e 215 (245)
T KOG1207|consen 147 HTVYCATKAALDMLTKCLAL-EL---GPQKIRVNSVNPTVVMTDMGRDNWS---DPDKKKKMLD----RIPLKRFAEVDE 215 (245)
T ss_pred ceEEeecHHHHHHHHHHHHH-hh---CcceeEeeccCCeEEEecccccccC---Cchhccchhh----hCchhhhhHHHH
Confidence 27899999999988765432 22 3578999999999887643221100 0011111110 011235778999
Q ss_pred HHHHHHHHHh
Q 011770 235 LVLALILASM 244 (478)
Q Consensus 235 va~a~~~a~~ 244 (478)
+++|+..++.
T Consensus 216 VVnA~lfLLS 225 (245)
T KOG1207|consen 216 VVNAVLFLLS 225 (245)
T ss_pred HHhhheeeee
Confidence 9999887665
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-10 Score=108.37 Aligned_cols=226 Identities=9% Similarity=-0.011 Sum_probs=136.8
Q ss_pred CCCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCC--------CCcccc--c---cc---------------C
Q 011770 7 EGIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRT--------NSPWSH--L---LI---------------N 56 (478)
Q Consensus 7 ~~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~--------~~~~~~--~---~~---------------~ 56 (478)
..+++|+++||||+ .-||++++++|.++|++ |++.++.+ ...... . .. .
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~-Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 82 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGAT-ILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASF 82 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCE-EEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhc
Confidence 34678999999995 89999999999999999 98876431 000000 0 00 0
Q ss_pred CCeEEEEecCCC--------HHHHHHHh-------cCcCEEEEcccCCC---C---chhhhchhhhhHhhhHHHHHHHHH
Q 011770 57 HGVHCIQGDVVS--------KIDVEKAA-------RGVDCVFHVASYGM---S---GKEMLQFGRVDEVNINGTCHVIEA 115 (478)
Q Consensus 57 ~~v~~v~gDl~d--------~~~l~~~l-------~~~D~ViHlAa~~~---~---~~~~~~~~~~~~vNv~gt~nll~a 115 (478)
...+-+..|+++ .+++++++ .++|++||+||... . ..+..+++..+++|+.|+.++.++
T Consensus 83 ~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a 162 (299)
T PRK06300 83 DTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSH 162 (299)
T ss_pred CCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 012223333333 11233333 25899999998532 1 112345678889999999999998
Q ss_pred HHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCC
Q 011770 116 CLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPA 193 (478)
Q Consensus 116 a~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~ 193 (478)
+... .-.++|.+||.....+. |. ....|+.||...+.+.+....+ +. ..+|+++..+.|+
T Consensus 163 ~~p~m~~~G~ii~iss~~~~~~~-------------p~--~~~~Y~asKaAl~~lt~~la~e-l~--~~~gIrVn~V~PG 224 (299)
T PRK06300 163 FGPIMNPGGSTISLTYLASMRAV-------------PG--YGGGMSSAKAALESDTKVLAWE-AG--RRWGIRVNTISAG 224 (299)
T ss_pred HHHHhhcCCeEEEEeehhhcCcC-------------CC--ccHHHHHHHHHHHHHHHHHHHH-hC--CCCCeEEEEEEeC
Confidence 8864 12478999886542110 11 0026999999999998766542 11 0258999999999
Q ss_pred ceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 194 AIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 194 ~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.+--+..... .+..........+ ...+...+|++.++..++.. ......|+++.+.+|
T Consensus 225 ~v~T~~~~~~~~~~~~~~~~~~~~p---------~~r~~~peevA~~v~~L~s~---------~~~~itG~~i~vdGG 284 (299)
T PRK06300 225 PLASRAGKAIGFIERMVDYYQDWAP---------LPEPMEAEQVGAAAAFLVSP---------LASAITGETLYVDHG 284 (299)
T ss_pred CccChhhhcccccHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCc---------cccCCCCCEEEECCC
Confidence 9876532110 1111111111111 11244679999998877652 122456788877655
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=106.39 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=121.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
+.+.+||||||+..||..|++++.+.|.+ |++..|+...........+.+.-..+|+.|.++.++..+ ..++
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~-VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNv 81 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNT-VIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNV 81 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCE-EEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhe
Confidence 56789999999999999999999999998 999999876433333445677888999999987777664 4699
Q ss_pred EEEcccCCCC------chhhhchhhhhHhhhHHHHHHHHHHHHcC----CCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 82 VFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIEACLEFG----IQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 82 ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~aa~~~~----v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
+|++||+... .....+...-.++|..++.++..+...+= -.-+|.+||.-.+ -. .++.
T Consensus 82 liNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLaf-vP------m~~~----- 149 (245)
T COG3967 82 LINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAF-VP------MAST----- 149 (245)
T ss_pred eeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEecccccc-Cc------cccc-----
Confidence 9999996421 11122234556799999999888877652 2359999997552 11 1111
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
..|+.||+..-.+-.....+ ++ ..+++++=+-|+.|--+
T Consensus 150 ----PvYcaTKAaiHsyt~aLR~Q-lk---~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 150 ----PVYCATKAAIHSYTLALREQ-LK---DTSVEVIELAPPLVDTT 188 (245)
T ss_pred ----ccchhhHHHHHHHHHHHHHH-hh---hcceEEEEecCCceecC
Confidence 24999999887665444321 11 45788888889988654
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=139.59 Aligned_cols=167 Identities=18% Similarity=0.210 Sum_probs=128.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCc----cc---------------------------------
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSP----WS--------------------------------- 51 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~----~~--------------------------------- 51 (478)
+++++|||||+|.||..++++|.++ |++ |++++|+.... +.
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~-viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~ 2074 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAH-FILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVR 2074 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCE-EEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccc
Confidence 4679999999999999999999998 587 99999872100 00
Q ss_pred -----c---------cccCCCeEEEEecCCCHHHHHHHhc------CcCEEEEcccCCCC----chhhhchhhhhHhhhH
Q 011770 52 -----H---------LLINHGVHCIQGDVVSKIDVEKAAR------GVDCVFHVASYGMS----GKEMLQFGRVDEVNIN 107 (478)
Q Consensus 52 -----~---------~~~~~~v~~v~gDl~d~~~l~~~l~------~~D~ViHlAa~~~~----~~~~~~~~~~~~vNv~ 107 (478)
. ......+.++.+|++|.+++.++++ ++|.|||+||.... ..+..+.+..+++|+.
T Consensus 2075 ~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813 2075 PVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred ccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence 0 0012357889999999999888775 47999999996432 2344567889999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceE
Q 011770 108 GTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYT 187 (478)
Q Consensus 108 gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~ 187 (478)
|+.++++++.....+++|++||...++|... ...|+.+|...+.+.+....+ ..+.++
T Consensus 2155 G~~~Ll~al~~~~~~~IV~~SSvag~~G~~g----------------qs~YaaAkaaL~~la~~la~~------~~~irV 2212 (2582)
T TIGR02813 2155 GLLSLLAALNAENIKLLALFSSAAGFYGNTG----------------QSDYAMSNDILNKAALQLKAL------NPSAKV 2212 (2582)
T ss_pred HHHHHHHHHHHhCCCeEEEEechhhcCCCCC----------------cHHHHHHHHHHHHHHHHHHHH------cCCcEE
Confidence 9999999998877789999999887655322 156999999998888766542 346889
Q ss_pred EEEeCCceeCCC
Q 011770 188 CAVRPAAIYGPG 199 (478)
Q Consensus 188 ~ilRp~~vyGp~ 199 (478)
+.+.|+.+-|+.
T Consensus 2213 ~sI~wG~wdtgm 2224 (2582)
T TIGR02813 2213 MSFNWGPWDGGM 2224 (2582)
T ss_pred EEEECCeecCCc
Confidence 999998876643
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=104.02 Aligned_cols=165 Identities=21% Similarity=0.198 Sum_probs=118.9
Q ss_pred CCCeEEEEcC-CChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--------CcC
Q 011770 10 EGKTFLVTGG-LGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--------GVD 80 (478)
Q Consensus 10 ~~~~ILVTGa-tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--------~~D 80 (478)
..++|||||+ .|-||.+|++++.++|+. |++..|+-+.- .......++...+.|+++++++.+... +.|
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~-V~AtaR~~e~M-~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld 83 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYL-VYATARRLEPM-AQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLD 83 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeE-EEEEccccchH-hhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceE
Confidence 3578999986 599999999999999999 99999876532 122335678999999999999887654 369
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC---CCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG---IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~---v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
+++|.||.....+ ....-+..+++|+-|..++.++....= -..+|++.|..+|-.. |.
T Consensus 84 ~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpf-------------pf-- 148 (289)
T KOG1209|consen 84 LLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPF-------------PF-- 148 (289)
T ss_pred EEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEecc-------------ch--
Confidence 9999999754433 233456788999999888888776431 2379999998875221 11
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCcee
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIY 196 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vy 196 (478)
.+.|..||++.-.+.+...- +++ -.|++++.+-+|.|-
T Consensus 149 -~~iYsAsKAAihay~~tLrl-El~---PFgv~Vin~itGGv~ 186 (289)
T KOG1209|consen 149 -GSIYSASKAAIHAYARTLRL-ELK---PFGVRVINAITGGVA 186 (289)
T ss_pred -hhhhhHHHHHHHHhhhhcEE-eee---ccccEEEEeccccee
Confidence 26799999988776654321 222 356677666666553
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-09 Score=97.40 Aligned_cols=197 Identities=18% Similarity=0.186 Sum_probs=134.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCccc-c----cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWS-H----LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~-~----~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
.+.|+||||+--||-.|+++|++. |.+ |++..++.++... . ...+++++.++.|+++.+++.++.+
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~-~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg 81 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIE-VIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG 81 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcE-EEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence 467999999999999999999976 666 6666666443311 1 1236889999999999888887764
Q ss_pred --CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHH----cC---------C--CeEEEEeccceeeC
Q 011770 78 --GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLE----FG---------I--QRLVYVSTYNVVFG 135 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~----~~---------v--~r~V~~SS~~v~~g 135 (478)
|.|.+|++||...+. +........+++|+.|+..+.+++.. .. + ..+|++||...--+
T Consensus 82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~ 161 (249)
T KOG1611|consen 82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIG 161 (249)
T ss_pred cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccC
Confidence 578999999964322 12233567889999999888776542 11 1 26899999764211
Q ss_pred CccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCC
Q 011770 136 GKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGL 215 (478)
Q Consensus 136 ~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~ 215 (478)
+. ... ....|.+||++.-...+...- +++ ..++-++.+.||+|=-.-..
T Consensus 162 ~~---------~~~----~~~AYrmSKaAlN~f~ksls~-dL~---~~~ilv~sihPGwV~TDMgg-------------- 210 (249)
T KOG1611|consen 162 GF---------RPG----GLSAYRMSKAALNMFAKSLSV-DLK---DDHILVVSIHPGWVQTDMGG-------------- 210 (249)
T ss_pred CC---------CCc----chhhhHhhHHHHHHHHHHhhh-hhc---CCcEEEEEecCCeEEcCCCC--------------
Confidence 10 011 137899999999988876643 232 47788899999988432111
Q ss_pred CCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 216 VPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 216 ~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
.-.-+.+++-+..++..+.++.+.
T Consensus 211 ----------~~a~ltveeSts~l~~~i~kL~~~ 234 (249)
T KOG1611|consen 211 ----------KKAALTVEESTSKLLASINKLKNE 234 (249)
T ss_pred ----------CCcccchhhhHHHHHHHHHhcCcc
Confidence 123456777788888777765443
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=113.14 Aligned_cols=178 Identities=15% Similarity=0.070 Sum_probs=115.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+|+||.|||++|.||+.++..|..++. ++++.+|+...........+........+.+|++++.+.++++|+||++||
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 4677999999999999999999986653 239999983321111111111123345677776666788999999999999
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCcccc--CCCCCCCCCCCCccCCchHhhHHHH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIV--NGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~--~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
.... ...++.+....|+.++.++++++++++++++|+++|--+- .-.... ...+...+.|. ..||.+-+..
T Consensus 86 ~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvd-v~~~~~~~~~~~~sg~p~~----~viG~g~LDs 158 (321)
T PTZ00325 86 VPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN-STVPIAAETLKKAGVYDPR----KLFGVTTLDV 158 (321)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH-HHHHHHHhhhhhccCCChh----heeechhHHH
Confidence 6432 2234567889999999999999999999999999997661 111111 11233333332 5677763333
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE 201 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~ 201 (478)
-++-....+ ..+++...++ +.|+|.+.+
T Consensus 159 ~R~r~~la~-------~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 159 VRARKFVAE-------ALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred HHHHHHHHH-------HhCcChhheE-EEEEeecCC
Confidence 333222221 3455555666 778887665
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=103.71 Aligned_cols=200 Identities=23% Similarity=0.235 Sum_probs=138.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHHHHHHhcC-------
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKIDVEKAARG------- 78 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~l~~~l~~------- 78 (478)
.+|+||||+--+|..++.++..+|++ |+++.|+...... .......+.+..+|+.|.+++...+++
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~-Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGAD-VTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCc-eEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 58999999999999999999999999 9999887653211 111223477999999999999888763
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC-----CCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG-----IQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~-----v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
+|.+|||||...++. +....+..+++|..||.|++.++...- ..+++.+||....++-..
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~G----------- 181 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYG----------- 181 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCccc-----------
Confidence 599999999654332 334556788999999999999887641 238999999876443221
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC---cHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---HLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~---~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
.++|+.+|.+.-.+......+ + ..+++.++..-|+.+--||-.. -.|.... +...+
T Consensus 182 -----ysaYs~sK~alrgLa~~l~qE-~---i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t~---------ii~g~--- 240 (331)
T KOG1210|consen 182 -----YSAYSPSKFALRGLAEALRQE-L---IKYGVHVTLYYPPDTLTPGFERENKTKPEETK---------IIEGG--- 240 (331)
T ss_pred -----ccccccHHHHHHHHHHHHHHH-H---hhcceEEEEEcCCCCCCCccccccccCchhee---------eecCC---
Confidence 156777776654444333211 1 1479999999999999887432 1222221 11111
Q ss_pred ccceeHHHHHHHHHHHHh
Q 011770 227 TDWIYVDNLVLALILASM 244 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~ 244 (478)
.+.+--+++|.+++.-+.
T Consensus 241 ss~~~~e~~a~~~~~~~~ 258 (331)
T KOG1210|consen 241 SSVIKCEEMAKAIVKGMK 258 (331)
T ss_pred CCCcCHHHHHHHHHhHHh
Confidence 133678899999987765
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.7e-10 Score=109.68 Aligned_cols=176 Identities=15% Similarity=0.097 Sum_probs=118.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
....||.|||++|.||++++..|..++. ++++.+|+.+.........+........++.+.+++.++++++|+|||+||
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 3457999999999999999999987765 349999987632111111111222233455455567889999999999999
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCcccc--CCCCCCCCCCCCccCCchHhhHHHH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIV--NGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~--~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
.... +..++.+....|+..+.++.+.+.+++.+++|+++|--+ -+..+.. ......++.|. ..||.+++..
T Consensus 96 ~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv-D~~~~i~t~~~~~~s~~p~~----~viG~~~LDs 168 (323)
T PLN00106 96 VPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV-NSTVPIAAEVLKKAGVYDPK----KLFGVTTLDV 168 (323)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc-cccHHHHHHHHHHcCCCCcc----eEEEEecchH
Confidence 6433 223467788999999999999999999999999988544 1100000 01122333332 6799999888
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
+++-....+ ..+++...++- .|+|.+
T Consensus 169 ~Rl~~~lA~-------~lgv~~~~V~~-~ViGeH 194 (323)
T PLN00106 169 VRANTFVAE-------KKGLDPADVDV-PVVGGH 194 (323)
T ss_pred HHHHHHHHH-------HhCCChhheEE-EEEEeC
Confidence 887765554 46677666754 455655
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=102.56 Aligned_cols=217 Identities=21% Similarity=0.174 Sum_probs=135.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----ccccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HLLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.++|++++|||.|-||..++++|+++|.. +.+++-+...... .......+.|+++|+++..+++++++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik-~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f 81 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIK-VLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATF 81 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCch-heeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999998 7776655443211 12234568899999999999998887
Q ss_pred -CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHH----HHHcC---CCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEA----CLEFG---IQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~a----a~~~~---v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
.+|++||-|++.. +.+.+....+|+.|..|--.. ..+.. -.-+|..||..- - +..|..
T Consensus 82 g~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~G---L-------~P~p~~ 147 (261)
T KOG4169|consen 82 GTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAG---L-------DPMPVF 147 (261)
T ss_pred CceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccc---c-------Cccccc
Confidence 3699999999743 346788888997765554444 43321 125889999642 1 122333
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCC-CCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHc-CCCCeeeCCC----
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGR-PFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKL-GLVPFKIGEP---- 223 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~-~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~-g~~~~~~g~g---- 223 (478)
| .|+.||+-.=...++.+.. .. ...|+++..+.|+.+-- .++..+.. +..+. +++.
T Consensus 148 p------VY~AsKaGVvgFTRSla~~ayy---~~sGV~~~avCPG~t~t--------~l~~~~~~~~~~~e-~~~~~~~~ 209 (261)
T KOG4169|consen 148 P------VYAASKAGVVGFTRSLADLAYY---QRSGVRFNAVCPGFTRT--------DLAENIDASGGYLE-YSDSIKEA 209 (261)
T ss_pred h------hhhhcccceeeeehhhhhhhhH---hhcCEEEEEECCCcchH--------HHHHHHHhcCCccc-ccHHHHHH
Confidence 3 5888887543333321100 00 14689999999987621 22233322 22111 0000
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
-....--.-.+++..++.++|. ..+|.+|-+..+.
T Consensus 210 l~~~~~q~~~~~a~~~v~aiE~------------~~NGaiw~v~~g~ 244 (261)
T KOG4169|consen 210 LERAPKQSPACCAINIVNAIEY------------PKNGAIWKVDSGS 244 (261)
T ss_pred HHHcccCCHHHHHHHHHHHHhh------------ccCCcEEEEecCc
Confidence 0000112345778888888873 3467788887654
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.4e-09 Score=99.88 Aligned_cols=169 Identities=23% Similarity=0.235 Sum_probs=122.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhc---------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAAR--------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~--------- 77 (478)
...|-|+|||+-.-.|..|+.+|.++|+. |.+--..+++.... ....++...++.|++++++++++.+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~-V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~ 105 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFR-VFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED 105 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCE-EEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence 45678999999999999999999999999 88776554432111 1126778888999999999998876
Q ss_pred CcCEEEEcccCC-CCch----hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYG-MSGK----EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~-~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
+.=.|||+||+. ..++ ...+.....++|..|+..+..+.... --.|+|++||..- ..+ .
T Consensus 106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G---R~~----------~ 172 (322)
T KOG1610|consen 106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG---RVA----------L 172 (322)
T ss_pred cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc---Ccc----------C
Confidence 345899999953 2222 23466788899999998887776542 2259999999752 111 0
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
|. ..+|+.||...|........ ++. ..|+++.++-|| +|-.+
T Consensus 173 p~---~g~Y~~SK~aVeaf~D~lR~-EL~---~fGV~VsiiePG-~f~T~ 214 (322)
T KOG1610|consen 173 PA---LGPYCVSKFAVEAFSDSLRR-ELR---PFGVKVSIIEPG-FFKTN 214 (322)
T ss_pred cc---cccchhhHHHHHHHHHHHHH-HHH---hcCcEEEEeccC-ccccc
Confidence 11 36799999999988754432 232 589999999999 54443
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=96.04 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=84.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+.+++++++||||+|.||.++++.|.+.|++ |++.+++.+..... . .......++.+|++|.+++.++++
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~-V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAK-VIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999998 99999875422110 0 112346678999999988877553
Q ss_pred --CcCEEEEcccCCCCchhhh--chhhhhHhhhHHHHHHHHHHHHc-----------CCCeEEEEecccee
Q 011770 78 --GVDCVFHVASYGMSGKEML--QFGRVDEVNINGTCHVIEACLEF-----------GIQRLVYVSTYNVV 133 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~~~~--~~~~~~~vNv~gt~nll~aa~~~-----------~v~r~V~~SS~~v~ 133 (478)
++|++||+||......... ..+....+|+.++......+... +..||-.+||.++.
T Consensus 91 ~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
T PRK06720 91 FSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQS 161 (169)
T ss_pred cCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccccc
Confidence 5899999999654322111 11122245566554444333322 34588888887764
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=96.97 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=76.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhcC-------cCE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAARG-------VDC 81 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~~-------~D~ 81 (478)
|+++|||||||+|. +++.|.++|++ |++++|++...... ......+.++.+|++|.+++.+++++ +|.
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~-V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~ 78 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFH-VSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDL 78 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCE-EEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence 47999999999886 99999999998 99998865421110 11134678899999999999888763 455
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC----eEEEEeccc
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ----RLVYVSTYN 131 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~----r~V~~SS~~ 131 (478)
+|+.+ ++.++.++.++|++.|++ +++|+=.+.
T Consensus 79 lv~~v------------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 79 AVAWI------------------HSSAKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred EEEec------------------cccchhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 55543 456788999999999998 899975443
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.2e-09 Score=89.26 Aligned_cols=170 Identities=24% Similarity=0.295 Sum_probs=118.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-ccccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-HLLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+.++-..+||||..-+|..-++.|.++|.. |..+|...+.... ......++-|...|+++++++..++. ..
T Consensus 6 s~kglvalvtggasglg~ataerlakqgas-v~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrl 84 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQGAS-VALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRL 84 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcCce-EEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccce
Confidence 345667899999999999999999999999 9999976654322 22345668999999999999988875 46
Q ss_pred CEEEEcccCCCCc----------hhhhchhhhhHhhhHHHHHHHHHHHHc--------CCC--eEEEEeccceeeCCccc
Q 011770 80 DCVFHVASYGMSG----------KEMLQFGRVDEVNINGTCHVIEACLEF--------GIQ--RLVYVSTYNVVFGGKEI 139 (478)
Q Consensus 80 D~ViHlAa~~~~~----------~~~~~~~~~~~vNv~gt~nll~aa~~~--------~v~--r~V~~SS~~v~~g~~~~ 139 (478)
|+.++||+..... ...++..+..++|+.||.|+++..... +-+ -+|.+-|.+. |+++..
T Consensus 85 d~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaa-fdgq~g 163 (260)
T KOG1199|consen 85 DALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAA-FDGQTG 163 (260)
T ss_pred eeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeee-ecCccc
Confidence 9999999953211 123455677899999999999865431 112 3677777766 444332
Q ss_pred cCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 140 VNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 140 ~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
...|+.||...--+.+-..+ .+ ...|++++.+-|+..--|
T Consensus 164 ---------------qaaysaskgaivgmtlpiar-dl---a~~gir~~tiapglf~tp 203 (260)
T KOG1199|consen 164 ---------------QAAYSASKGAIVGMTLPIAR-DL---AGDGIRFNTIAPGLFDTP 203 (260)
T ss_pred ---------------hhhhhcccCceEeeechhhh-hc---ccCceEEEeecccccCCh
Confidence 15788888764333222211 01 257999999999876444
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=95.14 Aligned_cols=81 Identities=22% Similarity=0.225 Sum_probs=57.7
Q ss_pred CCCeEEEEcCC----------------ChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHH
Q 011770 10 EGKTFLVTGGL----------------GHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73 (478)
Q Consensus 10 ~~~~ILVTGat----------------GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~ 73 (478)
.+|+||||+|. ||+|++|+++|+++|++ |++++...............+..+.+|....+.+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~-V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~ 80 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAH-VIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMK 80 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCe-EEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHH
Confidence 57899999886 99999999999999999 99998643211000111223445667444456788
Q ss_pred HHhc--CcCEEEEcccCCCC
Q 011770 74 KAAR--GVDCVFHVASYGMS 91 (478)
Q Consensus 74 ~~l~--~~D~ViHlAa~~~~ 91 (478)
++++ ++|+|||+||....
T Consensus 81 ~~~~~~~~D~VIH~AAvsD~ 100 (229)
T PRK09620 81 SIITHEKVDAVIMAAAGSDW 100 (229)
T ss_pred HHhcccCCCEEEECccccce
Confidence 8884 68999999997543
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.7e-08 Score=95.63 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=78.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcC-------CceEEEEecCCCCcccc--c-ccCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRG-------AYQVRAFDLRTNSPWSH--L-LINHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G-------~~~V~~l~r~~~~~~~~--~-~~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
.||+||||+|+||++++..|...+ .+ |+++|+.+...... . ..........+|+.+..++.+.++++|+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~e-l~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI-LHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcE-EEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 579999999999999999999855 35 99999865321000 0 0000010223455555677788999999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCe-EEEEe
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQR-LVYVS 128 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r-~V~~S 128 (478)
|||+|+.... ...++.+.++.|+.-.+.+.+...++. .+- +|.+|
T Consensus 82 VI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 82 AILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred EEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9999996432 223457788999999999999998884 333 44444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.6e-08 Score=96.38 Aligned_cols=97 Identities=25% Similarity=0.282 Sum_probs=77.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
||+|+|.|+ |+||+.++..|.++| .+ |++.||+....... .....+++..+.|+.|.+++.+++++.|+|||++.+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~-V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGE-VTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 578999998 999999999999998 56 99999986643222 222347999999999999999999999999999964
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEe
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~S 128 (478)
.. +.+++++|.+.|+ ++|=+|
T Consensus 79 ~~------------------~~~i~ka~i~~gv-~yvDts 99 (389)
T COG1748 79 FV------------------DLTILKACIKTGV-DYVDTS 99 (389)
T ss_pred hh------------------hHHHHHHHHHhCC-CEEEcc
Confidence 21 1268999999997 555444
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-07 Score=83.21 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=111.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-c--cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-H--LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-~--~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+.+-||+||++--||..++..+.+.+-+ +....+....... . ........+..+|+++...+.+..+ +-
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e-~~r~g~~r~~a~~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gkr 83 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDE-ALRYGVARLLAELEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGGKR 83 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchH-HHHHhhhcccccccceEEEecCCcceechHHHHHHHHHHHHhhhhhcCCce
Confidence 3567999999999999999999888765 3333222221100 0 0011223445677776665554443 46
Q ss_pred CEEEEcccCCCC-------chhhhchhhhhHhhhHHHHHHHHHHHHc--C---CCeEEEEeccceeeCCccccCCCCCCC
Q 011770 80 DCVFHVASYGMS-------GKEMLQFGRVDEVNINGTCHVIEACLEF--G---IQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 80 D~ViHlAa~~~~-------~~~~~~~~~~~~vNv~gt~nll~aa~~~--~---v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
|.|||.||...+ .....+++.+++.|+.+...+...+.+. + .+-+|++||.+.+-
T Consensus 84 ~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~------------- 150 (253)
T KOG1204|consen 84 DIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR------------- 150 (253)
T ss_pred eEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc-------------
Confidence 999999995321 1233467889999999999888877764 2 25689999987631
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCC-CcceEEEEeCCceeCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNR-KCLYTCAVRPAAIYGP 198 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~-~gl~~~ilRp~~vyGp 198 (478)
|.. +...|+.+|++-+++.+..+.+ + .++.+..++||.|=-+
T Consensus 151 --p~~-~wa~yc~~KaAr~m~f~~lA~E------Ep~~v~vl~~aPGvvDT~ 193 (253)
T KOG1204|consen 151 --PFS-SWAAYCSSKAARNMYFMVLASE------EPFDVRVLNYAPGVVDTQ 193 (253)
T ss_pred --ccc-HHHHhhhhHHHHHHHHHHHhhc------CccceeEEEccCCcccch
Confidence 111 1268999999999999887654 3 4899999999988554
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-07 Score=88.55 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=113.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---cccc--CCCeEEEEecCCCHHH----HHHHhcC--c
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLI--NHGVHCIQGDVVSKID----VEKAARG--V 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~--~~~v~~v~gDl~d~~~----l~~~l~~--~ 79 (478)
++-..|||||.-||++.+++|.++|.+ |+.++|+.+.... +... .-.+.++..|.++.+. +.+.+.+ +
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~n-vvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFN-VVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 367999999999999999999999999 9999998764211 1111 2347788899987664 5555555 4
Q ss_pred CEEEEcccCCCCchh------hhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGKE------MLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 80 D~ViHlAa~~~~~~~------~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
.++||++|.....++ ......+..+|+.++..+.+.... .+-.-+|++||.+-. . | .
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~---~---------p-~ 194 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL---I---------P-T 194 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc---c---------c-C
Confidence 589999996542221 112356678898887666665543 344469999996531 0 0 1
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
|. .+.|+.||...+.+......+. ...|+.+-.+-|..|-++.
T Consensus 195 p~---~s~ysasK~~v~~~S~~L~~Ey----~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 195 PL---LSVYSASKAFVDFFSRCLQKEY----ESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred hh---HHHHHHHHHHHHHHHHHHHHHH----HhcCeEEEEeehhheeccc
Confidence 11 2679999997776654433211 1578999889998887764
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.2e-07 Score=85.28 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=50.1
Q ss_pred cCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC--HHHHHHHhcCcCEEEEcccCCC
Q 011770 18 GGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS--KIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 18 GatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d--~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
.+|||+|++|+++|+++|++ |+++++..... .....+++++.++-.+ .+.+.+.++++|+|||+||...
T Consensus 23 ~SSG~iG~aLA~~L~~~G~~-V~li~r~~~~~---~~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd 93 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGHE-VTLVTTKTAVK---PEPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD 93 (229)
T ss_pred ccchHHHHHHHHHHHhCCCE-EEEEECccccc---CCCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence 45899999999999999999 99998654311 1123467776654433 2456667778999999999754
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=93.61 Aligned_cols=187 Identities=11% Similarity=0.048 Sum_probs=117.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-c-----eEEEEecCCCC--cccccc-cCCCeEEEE--ecCCCHHHHHHHhcCc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-Y-----QVRAFDLRTNS--PWSHLL-INHGVHCIQ--GDVVSKIDVEKAARGV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~-----~V~~l~r~~~~--~~~~~~-~~~~v~~v~--gDl~d~~~l~~~l~~~ 79 (478)
.+||.|+|++|.||++++..|...|. + +++.+|+.... ...... ......... ..++ ....+.++++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~~~~~~da 79 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDPNVAFKDA 79 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCcHHHhCCC
Confidence 46899999999999999999998775 2 39999985432 111000 000000000 1111 1224577899
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC-Ce-EEEEeccceeeCCccccCCCCCCC-CCCCCccCC
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI-QR-LVYVSTYNVVFGGKEIVNGNESLP-YFPIDEHVD 156 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v-~r-~V~~SS~~v~~g~~~~~~~~E~~p-~~p~~~~~~ 156 (478)
|+||.+|+.... ...+..+..+.|+.-.+.+.+...+++. +- +|.+|...=+ -.. ..-...+ +.+ ..
T Consensus 80 DivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~---~t~-~~~k~sg~~p~----~~ 149 (322)
T cd01338 80 DWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT---NAL-IAMKNAPDIPP----DN 149 (322)
T ss_pred CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH---HHH-HHHHHcCCCCh----Hh
Confidence 999999996432 2235667889999999999999999873 44 4444421100 000 0001111 222 25
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCC
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLV 216 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~ 216 (478)
.||.|++..+++.....+ ..+++...+|...|||++....++.+......|.+
T Consensus 150 ViG~t~LDs~Rl~~~la~-------~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~p 202 (322)
T cd01338 150 FTAMTRLDHNRAKSQLAK-------KAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKP 202 (322)
T ss_pred eEEehHHHHHHHHHHHHH-------HhCcChhHeEEEEEEeCCcccEEEehhhcEECCEe
Confidence 799999999999887764 57888889999999999866555544444344443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-06 Score=84.86 Aligned_cols=114 Identities=22% Similarity=0.192 Sum_probs=79.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHH-c--CCceEEEEecCCCCccc-ccccC-CCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVR-R--GAYQVRAFDLRTNSPWS-HLLIN-HGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~-~--G~~~V~~l~r~~~~~~~-~~~~~-~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|||+|+||+|.||++++..|.. . +++ ++++|+.+..... ....+ +....+.+ .+.+++.+.++++|+||.++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~e-l~L~d~~~~~~g~alDl~~~~~~~~i~~--~~~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSE-LSLYDIAPVTPGVAVDLSHIPTAVKIKG--FSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccE-EEEEecCCCCcceehhhhcCCCCceEEE--eCCCCHHHHcCCCCEEEEcC
Confidence 5899999999999999988855 2 345 8888876432100 01111 11223333 22345566778999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
|.... ...++.+....|...+.++++++.+++.+++|.+.|-
T Consensus 78 G~~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 78 GVARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 96432 2234667889999999999999999999998888774
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-06 Score=81.38 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=72.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~ 89 (478)
|+|||+||||. |+.|++.|.++|++ |++..++.... ......+...+..+..|.+++.+.++ ++|+|||++...
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~-v~~s~~t~~~~--~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPf 76 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIE-ILVTVTTSEGK--HLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPF 76 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCe-EEEEEccCCcc--ccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHH
Confidence 57999999999 99999999999998 99988776532 12222334456677788888988886 599999998531
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
-...+.|..++|++.|++.+=|
T Consensus 77 ---------------A~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 77 ---------------AAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ---------------HHHHHHHHHHHHHHhCCcEEEE
Confidence 1245788999999999865444
|
This enzyme was found to be a monomer by gel filtration. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.7e-07 Score=91.16 Aligned_cols=95 Identities=32% Similarity=0.386 Sum_probs=69.5
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCcccccc--cCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLL--INHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~~~~~~--~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
|+|.|| |++|+.+++.|.+++.. +|++.||+......... ...++++++.|+.|.+++.++++++|+||||++..
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~- 78 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF- 78 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-
Confidence 799999 99999999999998642 49999998663221111 45789999999999999999999999999999742
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEe
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~S 128 (478)
....++++|.+.|+ ++|=+|
T Consensus 79 -----------------~~~~v~~~~i~~g~-~yvD~~ 98 (386)
T PF03435_consen 79 -----------------FGEPVARACIEAGV-HYVDTS 98 (386)
T ss_dssp -----------------GHHHHHHHHHHHT--EEEESS
T ss_pred -----------------hhHHHHHHHHHhCC-Ceeccc
Confidence 12258899999997 666533
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.5e-06 Score=81.73 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=74.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCc------eEEEEecCCCCcccccccCCCeEEEEecCCCH-----------HHHHHH
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAY------QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK-----------IDVEKA 75 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~------~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~-----------~~l~~~ 75 (478)
||.||||+|.||++++..|...|.- +++.+|+..+. +..+-...|+.|. ....+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~--------~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~ 73 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM--------KALEGVVMELQDCAFPLLKGVVITTDPEEA 73 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc--------CccceeeeehhhhcccccCCcEEecChHHH
Confidence 7999999999999999999876531 28899887521 1122223344333 345678
Q ss_pred hcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEE
Q 011770 76 ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVY 126 (478)
Q Consensus 76 l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~ 126 (478)
++++|+|||+||.... +..+..+..+.|+.-.+.+.....++. .+-++.
T Consensus 74 ~~~aDiVVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iii 123 (323)
T cd00704 74 FKDVDVAILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVL 123 (323)
T ss_pred hCCCCEEEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEE
Confidence 8999999999996432 223567788999999999999999984 544333
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.4e-06 Score=75.17 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCce----EEEEecCCCCccc--------ccccCCCeEEEEecCCCHHHHHHHhc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQ----VRAFDLRTNSPWS--------HLLINHGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~----V~~l~r~~~~~~~--------~~~~~~~v~~v~gDl~d~~~l~~~l~ 77 (478)
+.|-++|||++.-+|-++|.+|++...++ +....|+.+.... ......+++++..|+++-.++.++.+
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 34679999999999999999999875432 4445565553211 11123468999999999887777654
Q ss_pred -------CcCEEEEcccCCCCch-------------------------------hhhchhhhhHhhhHHHHHHHHHHHHc
Q 011770 78 -------GVDCVFHVASYGMSGK-------------------------------EMLQFGRVDEVNINGTCHVIEACLEF 119 (478)
Q Consensus 78 -------~~D~ViHlAa~~~~~~-------------------------------~~~~~~~~~~vNv~gt~nll~aa~~~ 119 (478)
..|+|+-.||....+. +...-..++++||-|.-.+++.....
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 5799999998643211 12234578899999988877765543
Q ss_pred ----CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCce
Q 011770 120 ----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAI 195 (478)
Q Consensus 120 ----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~v 195 (478)
.-+++|.+||...- +... --|+... .+...+|..||.+.+.+-.+.++.- ..-|+.--++.|+..
T Consensus 162 l~~~~~~~lvwtSS~~a~---kk~l-sleD~q~---~kg~~pY~sSKrl~DlLh~A~~~~~----~~~g~~qyvv~pg~~ 230 (341)
T KOG1478|consen 162 LCHSDNPQLVWTSSRMAR---KKNL-SLEDFQH---SKGKEPYSSSKRLTDLLHVALNRNF----KPLGINQYVVQPGIF 230 (341)
T ss_pred hhcCCCCeEEEEeecccc---cccC-CHHHHhh---hcCCCCcchhHHHHHHHHHHHhccc----cccchhhhcccCcee
Confidence 23489999998651 1100 0111111 1113579999999987765554321 123555555666544
Q ss_pred e
Q 011770 196 Y 196 (478)
Q Consensus 196 y 196 (478)
-
T Consensus 231 t 231 (341)
T KOG1478|consen 231 T 231 (341)
T ss_pred e
Confidence 3
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1e-05 Score=80.94 Aligned_cols=78 Identities=21% Similarity=0.161 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCChhHHH--HHHHHHHcCCceEEEEecCCCC-c-------------ccccccC--CCeEEEEecCCCHHH
Q 011770 10 EGKTFLVTGGLGHVGSA--LCLELVRRGAYQVRAFDLRTNS-P-------------WSHLLIN--HGVHCIQGDVVSKID 71 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~--Lv~~L~~~G~~~V~~l~r~~~~-~-------------~~~~~~~--~~v~~v~gDl~d~~~ 71 (478)
.+|++|||||++-+|.+ +++.| +.|.+ |+++++.... . ....... ..+..+.+|+++.++
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~-Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGAD-TLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCe-EEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 35899999999999999 89999 99998 8888753211 1 0111111 235678999999988
Q ss_pred HHHHhc-------CcCEEEEcccCC
Q 011770 72 VEKAAR-------GVDCVFHVASYG 89 (478)
Q Consensus 72 l~~~l~-------~~D~ViHlAa~~ 89 (478)
++++++ ++|++||++|..
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccC
Confidence 877664 589999999975
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-06 Score=76.34 Aligned_cols=81 Identities=27% Similarity=0.335 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
.+++++++|+||+|.+|+.+++.|.+.|++ |++++|+....... .....+.+...+|..|.+++.++++++|+||+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~-V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGAR-VVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 456789999999999999999999999987 99998864321110 00112455667889999999999999999999
Q ss_pred cccCC
Q 011770 85 VASYG 89 (478)
Q Consensus 85 lAa~~ 89 (478)
+.+.+
T Consensus 104 at~~g 108 (194)
T cd01078 104 AGAAG 108 (194)
T ss_pred CCCCC
Confidence 87643
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-05 Score=78.46 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=74.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCc------eEEEEecCCCCcccccccCCCeEEEEecCCCHH-----------HHHHH
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAY------QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI-----------DVEKA 75 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~------~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~-----------~l~~~ 75 (478)
+|.|+|++|.||++++..|...|.- +++.+|+.+... ..+-...|+.|.. +..+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~--------~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~ 72 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK--------VLEGVVMELMDCAFPLLDGVVPTHDPAVA 72 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc--------ccceeEeehhcccchhcCceeccCChHHH
Confidence 5899999999999999999875542 288999865421 1122234444433 34568
Q ss_pred hcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCe-EEEEe
Q 011770 76 ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQR-LVYVS 128 (478)
Q Consensus 76 l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r-~V~~S 128 (478)
++++|+|||+||.... ...++.+..+.|+.-.+.+.+...++. .+- +|.+|
T Consensus 73 ~~~aDiVVitAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 73 FTDVDVAILVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred hCCCCEEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 8899999999996432 223457788999999999999999984 544 44444
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=82.49 Aligned_cols=76 Identities=29% Similarity=0.286 Sum_probs=59.9
Q ss_pred CCCCCeEEEEcC----------------CChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH
Q 011770 8 GIEGKTFLVTGG----------------LGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71 (478)
Q Consensus 8 ~~~~~~ILVTGa----------------tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~ 71 (478)
.+++++|+|||| +|.+|.+++++|.++|++ |+++++..+. ..+.+ ....|+++.++
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~-V~~v~~~~~~-----~~~~~--~~~~dv~~~~~ 256 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGAD-VTLVSGPVNL-----PTPAG--VKRIDVESAQE 256 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCE-EEEeCCCccc-----cCCCC--cEEEccCCHHH
Confidence 467899999999 999999999999999999 9999875431 11222 34679999888
Q ss_pred HHHHhc----CcCEEEEcccCCCC
Q 011770 72 VEKAAR----GVDCVFHVASYGMS 91 (478)
Q Consensus 72 l~~~l~----~~D~ViHlAa~~~~ 91 (478)
+.++++ ++|++||+||+...
T Consensus 257 ~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 257 MLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred HHHHHHHhcCCCCEEEEccccccc
Confidence 777664 68999999997543
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3e-06 Score=84.04 Aligned_cols=73 Identities=26% Similarity=0.328 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.+.+++|+||||+|+||+.++++|.++ |..++++++|+...... .. .++..+|+. ++.+++.++|+|||++
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~--La---~el~~~~i~---~l~~~l~~aDiVv~~t 223 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE--LQ---AELGGGKIL---SLEEALPEADIVVWVA 223 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH--HH---HHhccccHH---hHHHHHccCCEEEECC
Confidence 467899999999999999999999865 65448888876442111 11 112234443 4668889999999999
Q ss_pred cC
Q 011770 87 SY 88 (478)
Q Consensus 87 a~ 88 (478)
+.
T Consensus 224 s~ 225 (340)
T PRK14982 224 SM 225 (340)
T ss_pred cC
Confidence 85
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00025 Score=65.18 Aligned_cols=226 Identities=12% Similarity=0.133 Sum_probs=130.6
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCcc--cccccC-CCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSPW--SHLLIN-HGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~~~~~~-~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++|++||+|-. --|+..+++.|.+.|.+ +......+.-.. .+...+ .....++||+++.+++++.++
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAe-L~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~ 81 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAE-LAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKK 81 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCE-EEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHh
Confidence 3789999999964 57999999999999998 665544332110 011111 223568999999999888775
Q ss_pred --CcCEEEEcccCCCCc--------hhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCC
Q 011770 78 --GVDCVFHVASYGMSG--------KEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~--------~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
+.|.++|+.|+.+.. .+.+.....+++.......+.++|+..= -..+|-+| |+|....
T Consensus 82 ~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt----Ylgs~r~------ 151 (259)
T COG0623 82 WGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT----YLGSERV------ 151 (259)
T ss_pred hCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE----eccceee------
Confidence 579999999975421 1122333444555555555666665431 11222221 2332221
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g 223 (478)
.|. .+.-|..|+..|.-++-.+.. + +..|+++..+-.+-|----.. ..+..++......-++
T Consensus 152 ---vPn---YNvMGvAKAaLEasvRyLA~d-l---G~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl------ 215 (259)
T COG0623 152 ---VPN---YNVMGVAKAALEASVRYLAAD-L---GKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPL------ 215 (259)
T ss_pred ---cCC---CchhHHHHHHHHHHHHHHHHH-h---CccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCc------
Confidence 121 256799999999888654321 1 246888776665443211000 1234455444433322
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
+.-+.++||.+.-..++..+.. ...|++.++-+|-.+
T Consensus 216 ---~r~vt~eeVG~tA~fLlSdLss---------giTGei~yVD~G~~i 252 (259)
T COG0623 216 ---RRNVTIEEVGNTAAFLLSDLSS---------GITGEIIYVDSGYHI 252 (259)
T ss_pred ---cCCCCHHHhhhhHHHHhcchhc---------ccccceEEEcCCcee
Confidence 2334578888776666654433 467888888776543
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.3e-06 Score=60.63 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=27.5
Q ss_pred eEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 339 HYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 339 ~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.+.|++||+++|||+|+++++++++++.+|++++..+
T Consensus 25 ~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~G 61 (62)
T PF13950_consen 25 LVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPNG 61 (62)
T ss_dssp E-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTTT
T ss_pred hhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcCC
Confidence 3679999999999999999999999999999988754
|
... |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.2e-05 Score=76.49 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=73.2
Q ss_pred CCCCCeEEEEcC----------------CChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH
Q 011770 8 GIEGKTFLVTGG----------------LGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71 (478)
Q Consensus 8 ~~~~~~ILVTGa----------------tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~ 71 (478)
.+++++|+|||| ||.+|..++++|..+|++ |+.+++..... .+.++ ...|+.+.++
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~-V~~~~g~~~~~-----~~~~~--~~~~v~~~~~ 253 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGAD-VTLITGPVSLL-----TPPGV--KSIKVSTAEE 253 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCE-EEEeCCCCccC-----CCCCc--EEEEeccHHH
Confidence 477899999999 478999999999999999 99987654311 12223 4679998888
Q ss_pred H-HHHh----cCcCEEEEcccCCCCchhhh-----ch-hhhhHhhhHHHHHHHHHHHHcC
Q 011770 72 V-EKAA----RGVDCVFHVASYGMSGKEML-----QF-GRVDEVNINGTCHVIEACLEFG 120 (478)
Q Consensus 72 l-~~~l----~~~D~ViHlAa~~~~~~~~~-----~~-~~~~~vNv~gt~nll~aa~~~~ 120 (478)
+ +.++ .++|++||+||......... .. ......|..-+-.+++..++..
T Consensus 254 ~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 254 MLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred HHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 7 4444 36899999999754322111 01 1223467777888888877654
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.4e-06 Score=70.69 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=74.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
|||.|+|++|.+|++++..|...+. ++++.+|+........ ............. .+ .+.++++|+||-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~----~~~~~~aDivvi 75 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GD----YEALKDADIVVI 75 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SS----GGGGTTESEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-cc----ccccccccEEEE
Confidence 5899999999999999999999875 3499999875421110 0011111111111 22 346779999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
+|+.... +..+..+..+.|..-.+.+.+...+++.+-++.+
T Consensus 76 tag~~~~--~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~viv 116 (141)
T PF00056_consen 76 TAGVPRK--PGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIV 116 (141)
T ss_dssp TTSTSSS--TTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE
T ss_pred ecccccc--ccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEE
Confidence 9996432 2234667789999999999999999986544443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.4e-05 Score=71.48 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=46.2
Q ss_pred cCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh-------cCcCEEEEcccCCC
Q 011770 18 GGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA-------RGVDCVFHVASYGM 90 (478)
Q Consensus 18 GatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l-------~~~D~ViHlAa~~~ 90 (478)
.++|.||.+++++|.++|++ |+++++.... ... ....+|+.+.+++.+.+ .++|++||+||...
T Consensus 22 ~SSGgIG~AIA~~la~~Ga~-Vvlv~~~~~l------~~~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv~d 92 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGHE-VTLVTTKRAL------KPE--PHPNLSIREIETTKDLLITLKELVQEHDILIHSMAVSD 92 (227)
T ss_pred CcccHHHHHHHHHHHHCCCE-EEEEcChhhc------ccc--cCCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEecc
Confidence 45899999999999999999 9988753221 010 01357888877766543 36899999999643
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=66.40 Aligned_cols=75 Identities=29% Similarity=0.351 Sum_probs=48.0
Q ss_pred CCCeEEEEcC----------------CChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHH-
Q 011770 10 EGKTFLVTGG----------------LGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV- 72 (478)
Q Consensus 10 ~~~~ILVTGa----------------tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l- 72 (478)
++++||||+| ||-.|.+|++++..+|++ |+.+....+ ...+.+++.++. ...+++
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~-V~li~g~~~-----~~~p~~~~~i~v--~sa~em~ 73 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAE-VTLIHGPSS-----LPPPPGVKVIRV--ESAEEML 73 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-E-EEEEE-TTS---------TTEEEEE---SSHHHHH
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCE-EEEEecCcc-----ccccccceEEEe--cchhhhh
Confidence 5788999975 699999999999999999 999975532 122456776654 444444
Q ss_pred ---HHHhcCcCEEEEcccCCCCc
Q 011770 73 ---EKAARGVDCVFHVASYGMSG 92 (478)
Q Consensus 73 ---~~~l~~~D~ViHlAa~~~~~ 92 (478)
.+.++++|++||+||.....
T Consensus 74 ~~~~~~~~~~Di~I~aAAVsDf~ 96 (185)
T PF04127_consen 74 EAVKELLPSADIIIMAAAVSDFR 96 (185)
T ss_dssp HHHHHHGGGGSEEEE-SB--SEE
T ss_pred hhhccccCcceeEEEecchhhee
Confidence 44455789999999976443
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=67.02 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=59.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
|+++|.| .|-+|+++++.|.+.|++ |+++++.+...............+.+|-+|++.++++ ++++|+++=+.+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~-Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHN-VVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCc-eEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 5788888 599999999999999999 9999987663211122235688899999999999998 789999996654
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=82.04 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-c------------eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-Y------------QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~------------~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
..+++|+|.|+ |+||+..++.|.+... + .|.+.|+............++++.++.|+.|.+++.++
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 35789999995 9999999999987532 1 26667665432211111234678899999999999999
Q ss_pred hcCcCEEEEcccC
Q 011770 76 ARGVDCVFHVASY 88 (478)
Q Consensus 76 l~~~D~ViHlAa~ 88 (478)
++++|+||.|...
T Consensus 646 v~~~DaVIsalP~ 658 (1042)
T PLN02819 646 VSQVDVVISLLPA 658 (1042)
T ss_pred hcCCCEEEECCCc
Confidence 9999999999864
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=71.02 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=68.5
Q ss_pred eEEEEcCCChhHHHHHHHHHH----cCCceEEEEecCCCCccc---------ccccCCCeEEEEecCCCHHHHHHHhcCc
Q 011770 13 TFLVTGGLGHVGSALCLELVR----RGAYQVRAFDLRTNSPWS---------HLLINHGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~----~G~~~V~~l~r~~~~~~~---------~~~~~~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
-++|.|||||-|..+++++++ .|.. .-+..|+...... .......+ ++.+|..|++++.+..+.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~s-lavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~emak~~ 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLS-LAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMAKQA 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCce-EEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHHhhh
Confidence 589999999999999999998 6666 6666665542110 01112334 7889999999999999999
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v 121 (478)
.+|+||+|+..... ++++.+|.++|.
T Consensus 85 ~vivN~vGPyR~hG----------------E~VVkacienG~ 110 (423)
T KOG2733|consen 85 RVIVNCVGPYRFHG----------------EPVVKACIENGT 110 (423)
T ss_pred EEEEeccccceecC----------------cHHHHHHHHcCC
Confidence 99999999532211 258999999997
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00059 Score=67.31 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=75.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCC--CeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINH--GVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~--~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
|||.|+|++|.||++++..|...|. ++++.+|+...........+. .... .+ ....+++.+.++++|+||-+||.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i-~~-~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKV-TG-YLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceE-EE-ecCCCchHHhcCCCCEEEEeCCC
Confidence 4899999999999999999988874 349999986211111111111 1112 21 10112356778999999999996
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe-EEEEe
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR-LVYVS 128 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r-~V~~S 128 (478)
... +..+..+..+.|..-.+.+.+...+++.+- +|.+|
T Consensus 79 ~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt 117 (310)
T cd01337 79 PRK--PGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS 117 (310)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 422 223567788999999999999999987654 33333
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00022 Score=69.96 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC--Ccccc---cc--cCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN--SPWSH---LL--INHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~--~~~~~---~~--~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
.+++++++|||| |-+|++++..|.+.|+++|++++|+.. ..... .. ....+.....|+.+.+++.+.++.+|
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence 356789999998 899999999999999976999998752 11111 01 11234566789988888888888999
Q ss_pred EEEEcccCCCCc
Q 011770 81 CVFHVASYGMSG 92 (478)
Q Consensus 81 ~ViHlAa~~~~~ 92 (478)
+|||+-..++.+
T Consensus 202 ilINaTp~Gm~~ 213 (289)
T PRK12548 202 ILVNATLVGMKP 213 (289)
T ss_pred EEEEeCCCCCCC
Confidence 999998876643
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00027 Score=71.78 Aligned_cols=101 Identities=22% Similarity=0.192 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
.++++|.|.||||++|..|++.|.++ +.+ |+.+.++.+.. ............+|+.+.++++.. ++++|+||-+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~e-l~~l~s~~saG--~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFE-ITVMTADRKAG--QSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCe-EEEEEChhhcC--CCchhhCccccCccccceecCCHHHhcCCCEEEEcC
Confidence 45679999999999999999999988 455 88887654321 111111122233455443333332 57899999877
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+.. .+.++...+ +.| .++|-.||..-
T Consensus 113 p~~------------------~s~~i~~~~-~~g-~~VIDlSs~fR 138 (381)
T PLN02968 113 PHG------------------TTQEIIKAL-PKD-LKIVDLSADFR 138 (381)
T ss_pred CHH------------------HHHHHHHHH-hCC-CEEEEcCchhc
Confidence 421 344566665 456 48999998765
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00071 Score=66.84 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=74.4
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCC--CeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINH--GVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~--~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
||.|+|++|.||++++..|..++. ++++++|+.+.........+. .... .+ ..+.+++.+.++++|+||-+|+..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i-~~-~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASV-KG-FSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceE-EE-ecCCCchHHHcCCCCEEEEeCCCC
Confidence 589999999999999999988875 349999987632111111111 1111 11 001123566889999999999964
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
.. ...+..+....|+.-.+.+.+...+++.+-+|.
T Consensus 79 ~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iii 113 (312)
T TIGR01772 79 RK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMIL 113 (312)
T ss_pred CC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEE
Confidence 22 233567788999999999999999987654433
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00027 Score=73.87 Aligned_cols=74 Identities=27% Similarity=0.273 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
+++|+|+|+|+++ +|..+++.|+++|++ |++.|+....... ......+++++.+|..+ +...++|+||+.
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~d~vv~~ 75 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAK-VILTDEKEEDQLKEALEELGELGIELVLGEYPE-----EFLEGVDLVVVS 75 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch-----hHhhcCCEEEEC
Confidence 5678999999877 999999999999999 9999986532211 11123367788888876 235679999999
Q ss_pred ccCC
Q 011770 86 ASYG 89 (478)
Q Consensus 86 Aa~~ 89 (478)
++..
T Consensus 76 ~g~~ 79 (450)
T PRK14106 76 PGVP 79 (450)
T ss_pred CCCC
Confidence 9863
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0006 Score=67.74 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=75.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-c-----eEEEEecCCCC--ccccc--ccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-Y-----QVRAFDLRTNS--PWSHL--LINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~-----~V~~l~r~~~~--~~~~~--~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
..||.|+|++|+||++++..|...|. . +++.+|+.... ..... ..+... ....+..-.....+.++++|
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~-~~~~~~~i~~~~~~~~~daD 81 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAF-PLLAGVVATTDPEEAFKDVD 81 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccc-cccCCcEEecChHHHhCCCC
Confidence 35899999999999999999998875 2 39999985421 11000 001000 00001100112345778999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC-CeEEEEec
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI-QRLVYVST 129 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v-~r~V~~SS 129 (478)
+||.+||... .+..+..+....|+.-.+.+.+.+.+++. +-++.+-|
T Consensus 82 vVVitAG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 82 AALLVGAFPR--KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred EEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 9999999642 22335677889999999999999999976 44444433
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00075 Score=67.62 Aligned_cols=94 Identities=19% Similarity=0.131 Sum_probs=60.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
|++|+|.||||++|+.|++.|.++||. +++++.+...... .....+.+....|+.+. .++++|+||-+++.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~--~l~~~g~~i~v~d~~~~-----~~~~vDvVf~A~g~ 73 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGK--ELSFKGKELKVEDLTTF-----DFSGVDIALFSAGG 73 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCC--eeeeCCceeEEeeCCHH-----HHcCCCEEEECCCh
Confidence 468999999999999999999998875 2477765543221 11112344555566532 23689999988753
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
. -+..+.....+.|+ ++|=.|+.
T Consensus 74 g------------------~s~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 74 S------------------VSKKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred H------------------HHHHHHHHHHhCCC-EEEECCch
Confidence 1 12234555556676 66666664
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00039 Score=69.00 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--cc-----CCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--LI-----NHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--~~-----~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
..++||.|+|+ |.||++++..|...|. +++..+|+......... .. ...+... . .+ . +.++++|
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~---~-~~~~~ad 75 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GD---Y-SDCKDAD 75 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CC---H-HHhCCCC
Confidence 34579999997 9999999999999887 24999998655321100 00 0122222 2 22 2 3478999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
+||-+|+.... +..+..+..+.|....+.+.+...+++.+-+|
T Consensus 76 ivIitag~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~v 118 (315)
T PRK00066 76 LVVITAGAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIF 118 (315)
T ss_pred EEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 99999986322 22345678899999999999999998765443
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00074 Score=66.87 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=72.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCC--Cccccc--ccC----CCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTN--SPWSHL--LIN----HGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~--~~~~~~--~~~----~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
|||.|+|+||++|++++..|...|+. +|+++|+... ...... ..+ .+... ....+ .+.+ .++++|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i~~~--~d~~-~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EIKIS--SDLS-DVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCc-EEEEC--CCHH-HhCCCCEE
Confidence 58999999999999999999999863 4999998541 110000 000 01110 11111 1123 48899999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEec
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVST 129 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS 129 (478)
|-+++.... +..+..+..+.|+.-...+.+...+.+.+ .+|..|+
T Consensus 77 iitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 77 IITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred EEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 999985322 22234567788999999999998887644 4555554
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0007 Score=67.81 Aligned_cols=106 Identities=26% Similarity=0.342 Sum_probs=73.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc-------------c----c------c--cccCC--Ce
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP-------------W----S------H--LLINH--GV 59 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~-------------~----~------~--~~~~~--~v 59 (478)
..++..+|+|.|+ |.+|++++..|...|..+++++|...-+. . . . ....+ .+
T Consensus 20 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 20 QKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 3567789999996 99999999999999996699998753110 0 0 0 00112 24
Q ss_pred EEEEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 60 HCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 60 ~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+.+..|+++ +.+.+.++++|+||.+.. |......+-++|.+.++ .+|+.|+...
T Consensus 99 ~~~~~~~~~-~~~~~~~~~~DlVid~~D-----------------n~~~r~~ln~~~~~~~i-P~i~~~~~g~ 152 (339)
T PRK07688 99 EAIVQDVTA-EELEELVTGVDLIIDATD-----------------NFETRFIVNDAAQKYGI-PWIYGACVGS 152 (339)
T ss_pred EEEeccCCH-HHHHHHHcCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCC-CEEEEeeeee
Confidence 556667654 557778899999999853 12223347788999986 7899887765
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00083 Score=67.06 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=57.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
|++|.|+||||++|..|++.|.++++. ++..+....+ . .......+ ...++.+.+.. + ++++|+||-++..
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~-a-G~~l~~~~---~~l~~~~~~~~-~-~~~vD~vFla~p~ 76 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSES-A-GHSVPFAG---KNLRVREVDSF-D-FSQVQLAFFAAGA 76 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECccc-C-CCeeccCC---cceEEeeCChH-H-hcCCCEEEEcCCH
Confidence 479999999999999999999987775 1334422221 1 11111122 22344333322 2 4789999987742
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
+ -...+.+.+.+.|+ ++|=.|+..
T Consensus 77 ---~---------------~s~~~v~~~~~~G~-~VIDlS~~f 100 (336)
T PRK05671 77 ---A---------------VSRSFAEKARAAGC-SVIDLSGAL 100 (336)
T ss_pred ---H---------------HHHHHHHHHHHCCC-eEEECchhh
Confidence 1 11236777778886 677777754
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0021 Score=64.00 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=73.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-c-----eEEEEecCCCCc--cccc--ccCCCeEEE-EecCCCHHHHHHHhcCc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-Y-----QVRAFDLRTNSP--WSHL--LINHGVHCI-QGDVVSKIDVEKAARGV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~-----~V~~l~r~~~~~--~~~~--~~~~~v~~v-~gDl~d~~~l~~~l~~~ 79 (478)
++||.|+|++|.||++++..|...|. . ++..+|+.+... .... ..+....+. ...++ ....+.++++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~y~~~~da 81 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDPNVAFKDA 81 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cChHHHhCCC
Confidence 46899999999999999999987664 2 489999854311 0000 000000000 00111 1234577899
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CC-eEEEEe
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQ-RLVYVS 128 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~-r~V~~S 128 (478)
|+||-+|+.... +..+..+....|+.-.+.+.+...++. .+ .+|.+|
T Consensus 82 DiVVitaG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 82 DVALLVGARPRG--PGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 999999985322 233567788999999999999999955 23 444444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00087 Score=57.23 Aligned_cols=96 Identities=10% Similarity=0.184 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
++++|++.| +| .|.+++..|.+.|++ |+++|.++... .......++++.+|+.+++ -+.-+++|.|+-+=
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G~~-ViaIDi~~~aV--~~a~~~~~~~v~dDlf~p~--~~~y~~a~liysir--- 85 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESGFD-VIVIDINEKAV--EKAKKLGLNAFVDDLFNPN--LEIYKNAKLIYSIR--- 85 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCCCE-EEEEECCHHHH--HHHHHhCCeEEECcCCCCC--HHHHhcCCEEEEeC---
Confidence 357899999 57 899999999999999 99999887632 1223456889999999876 23456889988552
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
++.+ -..-+++.|++.++.-+|..=|
T Consensus 86 -pp~e-------------l~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 86 -PPRD-------------LQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred -CCHH-------------HHHHHHHHHHHcCCCEEEEcCC
Confidence 2121 1234899999999876666543
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=66.76 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=58.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEE-EecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCI-QGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v-~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
|++|+|.||||++|+.+++.|.+. +++ ++++.++.+.........+.+..+ ..++.+.+.. ..+++|+||-|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~e-lv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVE-IVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCce-EEEEECccccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCc
Confidence 479999999999999999999876 556 776655332111011111112111 1233333332 45789999987642
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
. ....+...+.+.|+ ++|=.|+..-
T Consensus 79 ~------------------~~~~~v~~a~~aG~-~VID~S~~fR 103 (343)
T PRK00436 79 G------------------VSMDLAPQLLEAGV-KVIDLSADFR 103 (343)
T ss_pred H------------------HHHHHHHHHHhCCC-EEEECCcccC
Confidence 1 12345666667774 7888887643
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0047 Score=52.16 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=53.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCccccccc---CCCe-EEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 13 TFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLI---NHGV-HCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~---~~~v-~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
||.|+||||++|+.|++.|.+.- .+-+.+++++.+........ ..+. .....| .+.+. ++++|+||.|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~Dvvf~a~~ 75 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-ADPEE----LSDVDVVFLALP 75 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE-TSGHH----HTTESEEEE-SC
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee-cchhH----hhcCCEEEecCc
Confidence 69999999999999999998853 33233444444121111111 1111 222222 33333 378999999975
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
. ..+..+...+.+.|+ ++|=.|+.
T Consensus 76 ~------------------~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 76 H------------------GASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp H------------------HHHHHHHHHHHHTTS-EEEESSST
T ss_pred h------------------hHHHHHHHHHhhCCc-EEEeCCHH
Confidence 1 123346667778887 66666654
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0021 Score=64.42 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=72.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--cc-----------------------ccccCC--Ce
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WS-----------------------HLLINH--GV 59 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~-----------------------~~~~~~--~v 59 (478)
..++.++|+|.|+ |-+|+++++.|...|..+++++|+..-+. .. .....+ .+
T Consensus 20 ~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 20 RKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred HhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 4567789999995 77999999999999986599898864110 00 000112 35
Q ss_pred EEEEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 60 HCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 60 ~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+.+..|++ .+.++++++++|+||.+..- ...-..+-++|.+.++ .+|+.+....
T Consensus 99 ~~~~~~~~-~~~~~~~~~~~DlVid~~D~-----------------~~~r~~in~~~~~~~i-p~i~~~~~g~ 152 (338)
T PRK12475 99 VPVVTDVT-VEELEELVKEVDLIIDATDN-----------------FDTRLLINDLSQKYNI-PWIYGGCVGS 152 (338)
T ss_pred EEEeccCC-HHHHHHHhcCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeccc
Confidence 56667775 45678889999999998631 1111235678888887 6788877654
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.002 Score=63.11 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=74.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCcccccc-cCCCeEE--EEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLL-INHGVHC--IQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~~~~~~-~~~~v~~--v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+||.|+|+ |.||+.++-.|..++.. +++.+|+.......... ......+ ....+....+ .+.++++|+|+-+||
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCC
Confidence 47999999 99999999999887654 59999988432211110 0000101 1122222111 456789999999998
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
.... +-.+..+..+.|..-...+.+...+.+.+-++.+=|
T Consensus 79 ~prK--pGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 79 VPRK--PGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 5322 223457788999999999999999998755555443
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00076 Score=65.28 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=55.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
..++|-|||||.|.-++++|.++|.+ -....|+... .......-+.++-..++-+++.+++.+.+.++|+||+|.
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~-~aLAgRs~~k-l~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGP 81 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLT-AALAGRSSAK-LDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGP 81 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCc-hhhccCCHHH-HHHHHHhcCccccccCCCCHHHHHHHHhcceEEEecccc
Confidence 46999999999999999999999998 5444455432 111112223344445566689999999999999999995
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0041 Score=53.58 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=69.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--------c---------------cccC--CCeEEEEec
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--------H---------------LLIN--HGVHCIQGD 65 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--------~---------------~~~~--~~v~~v~gD 65 (478)
.++|+|.| .|-+|+.+++.|...|..+++++|...-.... . .... -.++.+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 46899999 59999999999999999779999864321100 0 0011 235566667
Q ss_pred CCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 66 VVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 66 l~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+ +.+...+.++++|+||.+..- ......+.+.|++.+. .+|+.++...
T Consensus 81 ~-~~~~~~~~~~~~d~vi~~~d~-----------------~~~~~~l~~~~~~~~~-p~i~~~~~g~ 128 (135)
T PF00899_consen 81 I-DEENIEELLKDYDIVIDCVDS-----------------LAARLLLNEICREYGI-PFIDAGVNGF 128 (135)
T ss_dssp C-SHHHHHHHHHTSSEEEEESSS-----------------HHHHHHHHHHHHHTT--EEEEEEEETT
T ss_pred c-ccccccccccCCCEEEEecCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeecC
Confidence 6 456678888999999998641 2223357788999987 7888877643
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.002 Score=65.01 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT 46 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~ 46 (478)
++++|+|+||||++|++|++.|.+...-+++++.++.
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~ 38 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE 38 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence 4579999999999999999999876553388874443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0016 Score=68.13 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=58.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
|+|+|+|+ |.+|+++++.|.+.|++ |+++++++... .......+++++.||.++.+.++++ ++++|.||-+..
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~-v~vid~~~~~~-~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENND-VTVIDTDEERL-RRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCc-EEEEECCHHHH-HHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 47999997 99999999999999999 99998865421 1111225689999999999999988 789999987753
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00052 Score=58.35 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=55.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHH-cCCceEEEEecCCCCccc-ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVR-RGAYQVRAFDLRTNSPWS-HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~~l~r~~~~~~~-~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
+||.|.|++|-+|+.+++.+.+ .|++-|-+++++++.... ......+.. ...+.-.++++++++.+|+||++..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~--~~~~~v~~~l~~~~~~~DVvIDfT~-- 76 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG--PLGVPVTDDLEELLEEADVVIDFTN-- 76 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS--T-SSBEBS-HHHHTTH-SEEEEES---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC--CcccccchhHHHhcccCCEEEEcCC--
Confidence 4899999999999999999999 577723344554421110 000000000 0111112567888888999999862
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
-..+...++.|.++|+ .+|--+|
T Consensus 77 ----------------p~~~~~~~~~~~~~g~-~~ViGTT 99 (124)
T PF01113_consen 77 ----------------PDAVYDNLEYALKHGV-PLVIGTT 99 (124)
T ss_dssp ----------------HHHHHHHHHHHHHHT--EEEEE-S
T ss_pred ----------------hHHhHHHHHHHHhCCC-CEEEECC
Confidence 1345568889999987 4444333
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=61.57 Aligned_cols=86 Identities=21% Similarity=0.138 Sum_probs=55.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-CCceEEE-EecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR-GAYQVRA-FDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~-l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+++|.|+|++|.+|+.+++.+.+. +.+ +++ +|+.+.... .. -..++...++++++++++|+||+++..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~e-lvav~d~~~~~~~-~~--------~~~~i~~~~dl~~ll~~~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLE-LVAAVDRPGSPLV-GQ--------GALGVAITDDLEAVLADADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEecCCcccc-cc--------CCCCccccCCHHHhccCCCEEEECCCH
Confidence 368999999999999999988864 666 665 444433111 11 122343445566677789999999842
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
. ....+++.|.++|+ ++|
T Consensus 71 ~------------------~~~~~~~~al~~G~-~vv 88 (257)
T PRK00048 71 E------------------ATLENLEFALEHGK-PLV 88 (257)
T ss_pred H------------------HHHHHHHHHHHcCC-CEE
Confidence 1 12346677777775 444
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00048 Score=59.48 Aligned_cols=78 Identities=23% Similarity=0.340 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--ccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--LINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
+.++++++|.|+ |-.|+.++..|.+.|.++|+++.|+........ .....++++ ++ +++.+.++++|+||++
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~--~~---~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAI--PL---EDLEEALQEADIVINA 82 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEE--EG---GGHCHHHHTESEEEE-
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcccccee--eH---HHHHHHHhhCCeEEEe
Confidence 577899999996 889999999999999988999988754321111 111233433 33 3455777899999999
Q ss_pred ccCCCC
Q 011770 86 ASYGMS 91 (478)
Q Consensus 86 Aa~~~~ 91 (478)
.+.++.
T Consensus 83 T~~~~~ 88 (135)
T PF01488_consen 83 TPSGMP 88 (135)
T ss_dssp SSTTST
T ss_pred cCCCCc
Confidence 886543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0048 Score=61.07 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=71.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCccccccc--------CCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLLI--------NHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~~~~~~~--------~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
+||.|.|+ |.+|+.++..|+..|.. +|+++|+........... ....... . .+. +.++++|+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~----~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDY----SDCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCH----HHhCCCCEE
Confidence 47999995 99999999999999942 399999876532111100 1122222 1 222 236899999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
|.+++.... ...+..+..+.|..-.+.+.+...+++.+-+|.
T Consensus 73 Iitag~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vi 114 (306)
T cd05291 73 VITAGAPQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFL 114 (306)
T ss_pred EEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 999986322 223456788899999999999999987654433
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.028 Score=49.03 Aligned_cols=143 Identities=20% Similarity=0.213 Sum_probs=76.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCH---H----HHHHHhc--CcCE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK---I----DVEKAAR--GVDC 81 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~---~----~l~~~l~--~~D~ 81 (478)
..+|+|-||-|-+|++.++.+.+++|. |.-+|....... +.-..+.+|-.=. + .+.+.++ ++|.
T Consensus 3 agrVivYGGkGALGSacv~~Fkannyw-V~siDl~eNe~A------d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYW-VLSIDLSENEQA------DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeE-EEEEeecccccc------cceEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 368999999999999999999999999 999987655221 1112233332211 1 1222332 5899
Q ss_pred EEEcccCCCCc--hhh---hchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 82 VFHVASYGMSG--KEM---LQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 82 ViHlAa~~~~~--~~~---~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
||..|+--..+ .+. .+.+..++..|-...--...+.++ +..-+..+.......++.+ ..
T Consensus 76 v~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gTP---------------gM 140 (236)
T KOG4022|consen 76 VFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGTP---------------GM 140 (236)
T ss_pred EEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCCC---------------cc
Confidence 99999832221 111 122222222222211111111111 2223333333222122111 12
Q ss_pred CchHhhHHHHHHHHHHHcCC
Q 011770 156 DSYGRSKSVAEQLVLKSNGR 175 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~ 175 (478)
-.||..|.+..+++.....+
T Consensus 141 IGYGMAKaAVHqLt~SLaak 160 (236)
T KOG4022|consen 141 IGYGMAKAAVHQLTSSLAAK 160 (236)
T ss_pred cchhHHHHHHHHHHHHhccc
Confidence 46999999999999887653
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00064 Score=67.40 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=31.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
++|.|+| +|.+|+.++..|.++|++ |++.|+++.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~-V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHE-VRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCe-eEEEeCCHH
Confidence 5899999 899999999999999998 999998754
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0026 Score=60.18 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--ccc---------------------cccCC--CeEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSH---------------------LLINH--GVHC 61 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~---------------------~~~~~--~v~~ 61 (478)
..+++.+|+|.| .|-+|+++++.|...|..+++++|...-+. ... ....+ .++.
T Consensus 17 ~~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 17 EKLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 456778999999 699999999999999997788887543211 000 00012 3455
Q ss_pred EEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+..+++ .+.+.+.++++|+||.|..- ...-..+-+.|.++++ .+|+.+....
T Consensus 96 ~~~~i~-~~~~~~~~~~~DvVi~~~d~-----------------~~~r~~l~~~~~~~~i-p~i~~g~~g~ 147 (228)
T cd00757 96 YNERLD-AENAEELIAGYDLVLDCTDN-----------------FATRYLINDACVKLGK-PLVSGAVLGF 147 (228)
T ss_pred ecceeC-HHHHHHHHhCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeccC
Confidence 555663 45677888899999998741 1122347788999986 7888876553
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0025 Score=63.42 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccc--cCC-CeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLL--INH-GVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~--~~~-~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
+.+||.|+|| |.+|+.++..|...| .+ |+.+|++......... .+. ...-....+....+.+ .++++|+||-+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVit 80 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVIT 80 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEEC
Confidence 4679999996 999999999998888 46 9999987653211100 000 0000001111112344 67899999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe-EEEEec
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR-LVYVST 129 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r-~V~~SS 129 (478)
|+..... ..+..+....|..-...+.+...+++.+. +|.+|-
T Consensus 81 ag~~~~~--g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 81 AGVQRKE--EMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9854322 22345677889988889999998887655 555544
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0034 Score=57.97 Aligned_cols=106 Identities=20% Similarity=0.317 Sum_probs=70.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--ccc-----------------------cccCCC--eE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSH-----------------------LLINHG--VH 60 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~-----------------------~~~~~~--v~ 60 (478)
.++..+|+|.|++| +|+++++.|...|..+++++|...-.. ... ....+. ++
T Consensus 16 ~L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 16 KLRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred HHhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEE
Confidence 45678999999776 999999999999998899998653211 000 001122 44
Q ss_pred EEEecCCC-HHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 61 CIQGDVVS-KIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 61 ~v~gDl~d-~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
.+..++.+ .+...+.++++|+||.+-. |......+-+.|+++++ .+|+.++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~dvVi~~~d-----------------~~~~~~~ln~~c~~~~i-p~i~~~~~G~ 149 (198)
T cd01485 95 IVEEDSLSNDSNIEEYLQKFTLVIATEE-----------------NYERTAKVNDVCRKHHI-PFISCATYGL 149 (198)
T ss_pred EEecccccchhhHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEeecC
Confidence 44455542 3456667788999997642 11222346688999997 7898888665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.003 Score=62.80 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccc--------cCCCeEEEEecCCCHHHHHHHhcCc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLL--------INHGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~--------~~~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
.+++||.|+| +|.+|+.++..+...|. + |+.+|+++........ .....++. + -+| . +.++++
T Consensus 4 ~~~~KI~IIG-aG~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~-~~d---~-~~l~~a 75 (321)
T PTZ00082 4 IKRRKISLIG-SGNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-G-TNN---Y-EDIAGS 75 (321)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-E-CCC---H-HHhCCC
Confidence 4457999999 59999999999999996 6 9999987763211000 01112222 1 123 2 357899
Q ss_pred CEEEEcccCCCCchh---hhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEec
Q 011770 80 DCVFHVASYGMSGKE---MLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVST 129 (478)
Q Consensus 80 D~ViHlAa~~~~~~~---~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS 129 (478)
|+||.+|+....+.. +.+..+....|+.-.+.+.+...+.+.+ .++.+|-
T Consensus 76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999986432111 0134556778999889999999888865 4665554
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=64.86 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=58.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc-CCceEEEE-ecCCCCcccccccCCCeEEE-EecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR-GAYQVRAF-DLRTNSPWSHLLINHGVHCI-QGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l-~r~~~~~~~~~~~~~~v~~v-~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
++|.|.||||++|..+++.|.+. +.+ ++.+ +++++.........+.+... ..++.+. +.+++.+++|+||-|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~e-l~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVE-ITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPI-DEEEIAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCce-EEEEeccchhcCCChHHhCccccccCCceeecC-CHHHhhcCCCEEEECCCc
Confidence 47999999999999999999876 455 7744 54332111011111211111 1112211 223344589999988752
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
. ....+...+.+.| +++|=.|+..-
T Consensus 79 ~------------------~s~~~~~~~~~~G-~~VIDlS~~fR 103 (346)
T TIGR01850 79 G------------------VSAELAPELLAAG-VKVIDLSADFR 103 (346)
T ss_pred h------------------HHHHHHHHHHhCC-CEEEeCChhhh
Confidence 1 2344666777778 48888888643
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0069 Score=60.78 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+++|.|.||||++|..|++.|.+++|. ++..+....+.. ......+.+....++. . +.++++|+||-+++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaG--k~~~~~~~~~~v~~~~-~----~~~~~~D~vf~a~p 78 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAG--KKVTFEGRDYTVEELT-E----DSFDGVDIALFSAG 78 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCC--CeeeecCceeEEEeCC-H----HHHcCCCEEEECCC
Confidence 3468999999999999999999988874 133333222211 1111122333333443 2 23478999998875
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
.. .+..+...+.+.|+ ++|=.|+..
T Consensus 79 ~~------------------~s~~~~~~~~~~g~-~VIDlS~~f 103 (344)
T PLN02383 79 GS------------------ISKKFGPIAVDKGA-VVVDNSSAF 103 (344)
T ss_pred cH------------------HHHHHHHHHHhCCC-EEEECCchh
Confidence 31 12234445555675 677777754
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0034 Score=65.65 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
..+++|+|.|+ |.+|+++++.|.+.|++ |+++++++...........++..+.||.++.+.++++ ++++|.||-+..
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~-v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYS-VKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence 35689999997 99999999999999999 9999877542111111224678899999999988654 468899885442
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
- .+.|... ...|++.+++++|....
T Consensus 307 ~-------------~~~n~~~----~~~~~~~~~~~ii~~~~ 331 (453)
T PRK09496 307 D-------------DEANILS----SLLAKRLGAKKVIALVN 331 (453)
T ss_pred C-------------cHHHHHH----HHHHHHhCCCeEEEEEC
Confidence 1 1245442 33556667777665544
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0052 Score=58.51 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c---------------------cccCCC--eEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H---------------------LLINHG--VHC 61 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~---------------------~~~~~~--v~~ 61 (478)
..++..+|+|.| .|-+|+.++..|...|..+++++|...-.... . ....+. ++.
T Consensus 20 ~~L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~ 98 (240)
T TIGR02355 20 EALKASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP 98 (240)
T ss_pred HHHhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 456778999999 58999999999999998778888875432100 0 001122 333
Q ss_pred EEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
+...+ +.+.+.+.++++|+||.+..- ......+-++|.++++ .+|+.++..
T Consensus 99 ~~~~i-~~~~~~~~~~~~DlVvd~~D~-----------------~~~r~~ln~~~~~~~i-p~v~~~~~g 149 (240)
T TIGR02355 99 INAKL-DDAELAALIAEHDIVVDCTDN-----------------VEVRNQLNRQCFAAKV-PLVSGAAIR 149 (240)
T ss_pred EeccC-CHHHHHHHhhcCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEecc
Confidence 43334 345577788899999998731 1222346688999986 788876654
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0039 Score=57.76 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--cc---------------------ccccCCC--eE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WS---------------------HLLINHG--VH 60 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~---------------------~~~~~~~--v~ 60 (478)
+..+...+|+|.| .|-+|+++++.|...|..+++++|...-+. .. .....+. ++
T Consensus 16 q~kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~ 94 (202)
T TIGR02356 16 QQRLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVT 94 (202)
T ss_pred HHHhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEE
Confidence 3456778999999 699999999999999986699998763210 00 0011123 33
Q ss_pred EEEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 61 ~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
.+..++. .+.+.+.++++|+||.+..- ...-..+-+.|+++++ .+|+.++...
T Consensus 95 ~~~~~i~-~~~~~~~~~~~D~Vi~~~d~-----------------~~~r~~l~~~~~~~~i-p~i~~~~~g~ 147 (202)
T TIGR02356 95 ALKERVT-AENLELLINNVDLVLDCTDN-----------------FATRYLINDACVALGT-PLISAAVVGF 147 (202)
T ss_pred EehhcCC-HHHHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeccC
Confidence 3444443 45677888999999998631 1122246688899986 6888876554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0057 Score=57.88 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
..+-||.|.||+|-||+-|...|. .... +....|............+-+-.......+-.+.++++++++|+|+-=|
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPA 104 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPA 104 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecC
Confidence 346789999999999999987664 4332 2445555433211111112122222334444678999999999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
|....+ --..++.+++|..-.+.+.+++.++..+-.|.+=|
T Consensus 105 GVPRKP--GMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 105 GVPRKP--GMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred CCCCCC--CCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 864322 22457889999999999999999987655555433
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0057 Score=56.40 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=68.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----------------------ccccCC--CeEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----------------------HLLINH--GVHC 61 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----------------------~~~~~~--~v~~ 61 (478)
+.++..+|+|.|++| +|+++++.|...|..+++++|...-+... .....+ .++.
T Consensus 17 ~~L~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 17 KRLRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred HHHHhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence 346678999999766 99999999999999879999865331100 001112 2444
Q ss_pred EEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+...+.+ ...+.++++|+||.+.. |...-..+-+.|+++++ .+|+.++...
T Consensus 96 ~~~~~~~--~~~~~~~~~dvVi~~~~-----------------~~~~~~~ln~~c~~~~i-p~i~~~~~G~ 146 (197)
T cd01492 96 DTDDISE--KPEEFFSQFDVVVATEL-----------------SRAELVKINELCRKLGV-KFYATGVHGL 146 (197)
T ss_pred EecCccc--cHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEecCC
Confidence 4444442 23556778899997642 11122335688999997 7888888664
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0047 Score=62.02 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=70.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--cc-----CCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--LI-----NHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--~~-----~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+||.|+|+ |.||++++..|+..|. +++..+|+......... .. ....+ +.++ .| .+ .++++|+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~-i~~~-~d---y~-~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTK-ILAS-TD---YA-VTAGSDLCI 110 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCE-EEeC-CC---HH-HhCCCCEEE
Confidence 69999995 9999999999988875 34999998654221110 00 11122 2221 12 22 378999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeE
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~ 124 (478)
-+|+.... +..+..+....|+.-.+.+.+...+++.+-+
T Consensus 111 itAG~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i 149 (350)
T PLN02602 111 VTAGARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTI 149 (350)
T ss_pred ECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 99996422 2234567788999999999999999875543
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.016 Score=57.26 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=73.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--c------c-CCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--L------I-NHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--~------~-~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
||.|.|+ |.||+.++..|+.+|. ++++.+|.......... . . ...++...+ | .+.++++|+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~----y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---D----YDDCADADII 72 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---C----HHHhCCCCEE
Confidence 5889997 9999999999998876 35999998654221110 0 0 113344333 2 3467899999
Q ss_pred EEcccCCCCchhhhc-hhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 83 FHVASYGMSGKEMLQ-FGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 83 iHlAa~~~~~~~~~~-~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
|-+|+....+ .+.. ..+....|+.-.+.+.+...+++.+-++.+-|
T Consensus 73 vitaG~~~kp-g~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 73 VITAGPSIDP-GNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred EECCCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 9999963221 1221 46788999999999999999998655544433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0071 Score=60.64 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=57.0
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEE---EEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVR---AFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~---~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
+|+|.||||++|..|++.|.+++|. +. .+.+..+.. ......+.+....|+. ...++++|+||-+++..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp-~~~l~~~as~~~~g--~~~~~~~~~~~~~~~~-----~~~~~~~D~v~~a~g~~ 72 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFP-IDKLVLLASDRSAG--RKVTFKGKELEVNEAK-----IESFEGIDIALFSAGGS 72 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCC-hhhEEEEeccccCC--CeeeeCCeeEEEEeCC-----hHHhcCCCEEEECCCHH
Confidence 5899999999999999999998887 43 333433221 1111223556666664 12347899999998632
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
-+..+.....+.|+ ++|=.||.
T Consensus 73 ------------------~s~~~a~~~~~~G~-~VID~ss~ 94 (339)
T TIGR01296 73 ------------------VSKEFAPKAAKCGA-IVIDNTSA 94 (339)
T ss_pred ------------------HHHHHHHHHHHCCC-EEEECCHH
Confidence 12234455556676 56655653
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0049 Score=61.03 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=70.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccc--cCC-CeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLL--INH-GVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~--~~~-~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|+||.|+|+ |.+|+.++..+...|. + |+++|+.+........ ... ......+.++...+. +.++++|+||-++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~e-v~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeE-EEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 479999998 9999999999998875 6 9999986543211110 000 000001111111123 3478999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe-EEEEe
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR-LVYVS 128 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r-~V~~S 128 (478)
+.... ...+..+....|+.-...+++...+...+. +|.+|
T Consensus 79 ~~p~~--~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 79 GVPRK--PGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred CCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 85321 222344566788888888888888876544 44444
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0031 Score=64.90 Aligned_cols=109 Identities=9% Similarity=-0.008 Sum_probs=73.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-------CC-ceEEEEecCCCCcccccc--cC------CCeEEEEecCCCHHHHHH
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR-------GA-YQVRAFDLRTNSPWSHLL--IN------HGVHCIQGDVVSKIDVEK 74 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~-------G~-~~V~~l~r~~~~~~~~~~--~~------~~v~~v~gDl~d~~~l~~ 74 (478)
.-||.|+|++|.||++++-.|... |. .+++.+|+.......... .+ .++.+. . .| .+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~-~--~~----ye 172 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG-I--DP----YE 172 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe-c--CC----HH
Confidence 358999999999999999999987 54 138888877653211110 00 112111 1 12 34
Q ss_pred HhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHH-cCCCe-EEEEe
Q 011770 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLE-FGIQR-LVYVS 128 (478)
Q Consensus 75 ~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~-~~v~r-~V~~S 128 (478)
.++++|+||-+||.... ...+..+..+.|+.-.+.+.+...+ ++.+- +|.+|
T Consensus 173 ~~kdaDiVVitAG~prk--pG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 173 VFQDAEWALLIGAKPRG--PGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred HhCcCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 67899999999996322 2235677889999999999999999 56443 44444
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0035 Score=60.63 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=70.9
Q ss_pred EEEEcCCChhHHHHHHHHHHcC----CceEEEEecCCCCcccccccC-CCeEE-EEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 14 FLVTGGLGHVGSALCLELVRRG----AYQVRAFDLRTNSPWSHLLIN-HGVHC-IQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G----~~~V~~l~r~~~~~~~~~~~~-~~v~~-v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|.|+||+|.+|+.++..|+..| .+ |..+|+.+.........- .-... ....+.-.++..++++++|+||-+++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~e-l~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIE-LVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceE-EEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence 5799999999999999999888 56 999998764321110000 00000 01122212245677899999999998
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
..... -.........|+.-.+.+.+...+.+.+-++
T Consensus 80 ~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~ 115 (263)
T cd00650 80 VGRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWI 115 (263)
T ss_pred CCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 64322 1234556778999999999999988754333
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.018 Score=54.96 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=72.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~ 88 (478)
|++|||.|||+ =|+.|++.|.+.|++ |++........ ....++..+.|-+.|.+++.+.++ ++++||+..-+
T Consensus 2 ~~~IlvlgGT~-egr~la~~L~~~g~~-v~~Svat~~g~----~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHP 75 (248)
T PRK08057 2 MPRILLLGGTS-EARALARALAAAGVD-IVLSLAGRTGG----PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHP 75 (248)
T ss_pred CceEEEEechH-HHHHHHHHHHhCCCe-EEEEEccCCCC----cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCc
Confidence 56899999987 599999999999998 77665444322 233467888899889999999996 79999997632
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
. . ..-+.|+.++|++.+++.+=|
T Consensus 76 f---A------------~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 76 Y---A------------AQISANAAAACRALGIPYLRL 98 (248)
T ss_pred c---H------------HHHHHHHHHHHHHhCCcEEEE
Confidence 1 1 235778999999999875444
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.013 Score=55.40 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=69.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc-------------ccc-----------cccCCC--eE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP-------------WSH-----------LLINHG--VH 60 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~-------------~~~-----------~~~~~~--v~ 60 (478)
..+++.+|+|.| .|-+|++++..|...|..+++++|...-+. ... ....+. ++
T Consensus 23 ~~L~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~ 101 (231)
T PRK08328 23 EKLKKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIE 101 (231)
T ss_pred HHHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEE
Confidence 346678999999 589999999999999987788888543210 000 000122 34
Q ss_pred EEEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 61 ~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
.+...++ .+.+.+.++++|+||.+..- ...-..+-++|++.++ .+|+.++...
T Consensus 102 ~~~~~~~-~~~~~~~l~~~D~Vid~~d~-----------------~~~r~~l~~~~~~~~i-p~i~g~~~g~ 154 (231)
T PRK08328 102 TFVGRLS-EENIDEVLKGVDVIVDCLDN-----------------FETRYLLDDYAHKKGI-PLVHGAVEGT 154 (231)
T ss_pred EEeccCC-HHHHHHHHhcCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEeeccC
Confidence 4455553 45567788899999988631 1112235578889986 7888877665
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.014 Score=55.86 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--cc---------------------ccccCC--CeEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WS---------------------HLLINH--GVHC 61 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~---------------------~~~~~~--~v~~ 61 (478)
..++..+|+|.|+ |-+|+++++.|...|..+++++|...-+. .. .....+ .++.
T Consensus 28 ~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 28 EKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 3467789999996 99999999999999987688887643211 00 000112 2444
Q ss_pred EEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
+...++ .+.+.+.++++|+||.+.. |...-..+-++|+++++ .+|+.++..
T Consensus 107 ~~~~i~-~~~~~~~~~~~DiVi~~~D-----------------~~~~r~~ln~~~~~~~i-p~v~~~~~g 157 (245)
T PRK05690 107 INARLD-DDELAALIAGHDLVLDCTD-----------------NVATRNQLNRACFAAKK-PLVSGAAIR 157 (245)
T ss_pred EeccCC-HHHHHHHHhcCCEEEecCC-----------------CHHHHHHHHHHHHHhCC-EEEEeeecc
Confidence 555554 4456778889999999863 11122346788989886 677765543
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0064 Score=63.54 Aligned_cols=75 Identities=23% Similarity=0.221 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--ccccCCCeEEEEecCCCHHHHHHHhc-CcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HLLINHGVHCIQGDVVSKIDVEKAAR-GVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~~~~~~v~~v~gDl~d~~~l~~~l~-~~D~ViHl 85 (478)
+++++|+|||++| +|...++.|.+.|++ |++.|+....... ......++++..++-. ..+ +. ++|.||..
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~-V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~---~~~~~d~vV~s 75 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGAN-VTVNDGKPFSENPEAQELLEEGIKVICGSHP--LEL---LDEDFDLMVKN 75 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCE-EEEEcCCCccchhHHHHHHhcCCEEEeCCCC--HHH---hcCcCCEEEEC
Confidence 4578999999988 999999999999999 9999876532111 1123345666544322 222 33 48999999
Q ss_pred ccCCC
Q 011770 86 ASYGM 90 (478)
Q Consensus 86 Aa~~~ 90 (478)
+|+..
T Consensus 76 ~gi~~ 80 (447)
T PRK02472 76 PGIPY 80 (447)
T ss_pred CCCCC
Confidence 98643
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0057 Score=60.56 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=71.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccc--cccC-----CCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSH--LLIN-----HGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~--~~~~-----~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
|+|.|.|+ |.+|+.++..|..+|. ++|.++|++....... ...+ ...... . .|. +.++++|+||
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~-~--~d~----~~l~~aDiVi 72 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY-A--GDY----ADCKGADVVV 72 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe-e--CCH----HHhCCCCEEE
Confidence 47999997 9999999999999993 3399999876422110 0000 112212 1 222 3478999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
-+++.... ...+..+....|+.....+.+...+++.+-++.+-|
T Consensus 73 ita~~~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 73 ITAGANQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99986322 222345677889999999999999887555554443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0038 Score=69.12 Aligned_cols=161 Identities=20% Similarity=0.261 Sum_probs=107.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--cc---ccccCCCeE--EEEecCCCHHHHHHHhcC-----
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WS---HLLINHGVH--CIQGDVVSKIDVEKAARG----- 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~---~~~~~~~v~--~v~gDl~d~~~l~~~l~~----- 78 (478)
.|..+|+||-|-.|-.|+..|.++|.+..+..+|+.-.. +. ......+++ +-.-|++..+...++++.
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl~ 1847 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKLG 1847 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhcc
Confidence 468999999999999999999999998566665543321 00 111223444 334566666655566553
Q ss_pred -cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 79 -VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 79 -~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
+--|||+|+.-..+ ....+.++.-+.-+.||.|+=...++.- .+.||.+||.+. ..+...
T Consensus 1848 ~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvsc-GRGN~G------------ 1914 (2376)
T KOG1202|consen 1848 PVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSC-GRGNAG------------ 1914 (2376)
T ss_pred cccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecc-cCCCCc------------
Confidence 57899999853222 1222334444566788998888888764 568999999875 222111
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCce
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAI 195 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~v 195 (478)
.+.||.+-...|+++.+-. ..|++-+.+.=+.|
T Consensus 1915 ---QtNYG~aNS~MERiceqRr--------~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1915 ---QTNYGLANSAMERICEQRR--------HEGFPGTAIQWGAI 1947 (2376)
T ss_pred ---ccccchhhHHHHHHHHHhh--------hcCCCcceeeeecc
Confidence 1569999999999997643 57888777776655
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.029 Score=48.78 Aligned_cols=99 Identities=24% Similarity=0.348 Sum_probs=66.0
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----------------------ccccCCC--eEEEEecCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----------------------HLLINHG--VHCIQGDVV 67 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----------------------~~~~~~~--v~~v~gDl~ 67 (478)
+|+|.|+ |-+|+++++.|...|..+++++|...-.... .....+. ++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 5899995 9999999999999999769999865321100 0001122 344555554
Q ss_pred CHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 68 SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 68 d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
+.. ..+.++++|+||.+..- ......+.+.|+++++ .+|..++..
T Consensus 80 ~~~-~~~~~~~~diVi~~~d~-----------------~~~~~~l~~~~~~~~i-~~i~~~~~g 124 (143)
T cd01483 80 EDN-LDDFLDGVDLVIDAIDN-----------------IAVRRALNRACKELGI-PVIDAGGLG 124 (143)
T ss_pred hhh-HHHHhcCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEcCCC
Confidence 433 36677899999998741 2234457789999986 677777754
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0063 Score=60.30 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=70.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--ccC-----CCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--LIN-----HGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--~~~-----~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
.+||.|+|+ |.||++++..|...|. ++++.+|+......... ..+ ........ .|. + .++++|+|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy---~-~~~~adiv 75 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDY---S-VTANSKVV 75 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCH---H-HhCCCCEE
Confidence 358999995 9999999999988875 34899998664221100 000 11122211 232 3 37899999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
|-+|+.... ...+..+..+.|..-.+.+.+...+++.+-++
T Consensus 76 vitaG~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~v 116 (312)
T cd05293 76 IVTAGARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL 116 (312)
T ss_pred EECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 999986432 22345678899999999999999999755433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0094 Score=57.80 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=70.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--cc---------------------ccccCCC--eE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WS---------------------HLLINHG--VH 60 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~---------------------~~~~~~~--v~ 60 (478)
+..++..+|+|.| .|-+|+.++..|...|..+++++|...-.. .. .....+. ++
T Consensus 22 Q~kL~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~ 100 (287)
T PRK08223 22 QQRLRNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIR 100 (287)
T ss_pred HHHHhcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEE
Confidence 3456778999999 588999999999999997788888653211 00 0001122 44
Q ss_pred EEEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 61 ~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
.+...+++ +...++++++|+||.+.-.. +......+-++|+++++ .+|+.|...
T Consensus 101 ~~~~~l~~-~n~~~ll~~~DlVvD~~D~~---------------~~~~r~~ln~~c~~~~i-P~V~~~~~g 154 (287)
T PRK08223 101 AFPEGIGK-ENADAFLDGVDVYVDGLDFF---------------EFDARRLVFAACQQRGI-PALTAAPLG 154 (287)
T ss_pred EEecccCc-cCHHHHHhCCCEEEECCCCC---------------cHHHHHHHHHHHHHcCC-CEEEEeccC
Confidence 45555553 44677888999998765210 11223346788999996 788876554
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.012 Score=59.42 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=71.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--ccc---------------------cccCCC--eEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSH---------------------LLINHG--VHC 61 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~---------------------~~~~~~--v~~ 61 (478)
..+++.+|+|.|+ |-+|++++..|...|..+++++|...-+. ... ....+. ++.
T Consensus 24 ~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~ 102 (355)
T PRK05597 24 QSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV 102 (355)
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence 3467789999995 89999999999999998799888753211 000 001223 445
Q ss_pred EEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+..+++. +...+.++++|+||.+.. |...-..+-++|.+.++ .+|+.++...
T Consensus 103 ~~~~i~~-~~~~~~~~~~DvVvd~~d-----------------~~~~r~~~n~~c~~~~i-p~v~~~~~g~ 154 (355)
T PRK05597 103 SVRRLTW-SNALDELRDADVILDGSD-----------------NFDTRHLASWAAARLGI-PHVWASILGF 154 (355)
T ss_pred EEeecCH-HHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEEecC
Confidence 5556654 456678889999999873 11122236678999987 6888876553
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0021 Score=62.65 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=51.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
...+++++|+|+ |-+|+.++..|.+.|..+|++++|+................+..+. +..+.+.++|+||++..
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~----~~~~~~~~~DivInaTp 194 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDL----ELQEELADFDLIINATS 194 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecc----cchhccccCCEEEECCc
Confidence 356789999996 9999999999999995449999987542211111101100011111 23456678999999998
Q ss_pred CCCC
Q 011770 88 YGMS 91 (478)
Q Consensus 88 ~~~~ 91 (478)
.++.
T Consensus 195 ~g~~ 198 (278)
T PRK00258 195 AGMS 198 (278)
T ss_pred CCCC
Confidence 6653
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.055 Score=56.75 Aligned_cols=147 Identities=22% Similarity=0.252 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCC-ChhHHHHHHHHHHcCCceEEEEecCCCCccc---------ccccCCCeEEEEecCCCHHHHHHHhc-
Q 011770 9 IEGKTFLVTGGL-GHVGSALCLELVRRGAYQVRAFDLRTNSPWS---------HLLINHGVHCIQGDVVSKIDVEKAAR- 77 (478)
Q Consensus 9 ~~~~~ILVTGat-GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---------~~~~~~~v~~v~gDl~d~~~l~~~l~- 77 (478)
...+-.+||||+ |-||..+++.|++-|.. |++...+-+.... ........-++..+.....+++.+++
T Consensus 394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAt-VI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIew 472 (866)
T COG4982 394 YGDKVALVTGASKGSIAAAVVARLLAGGAT-VIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEW 472 (866)
T ss_pred cccceEEEecCCCcchHHHHHHHHHhCCcE-EEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHH
Confidence 456789999975 89999999999999999 9888644332100 00111224556677776666666553
Q ss_pred --------------------CcCEEEEcccCCCCchhh---hchhhhhHhhhHHHHHHHHHHHHcCCC-------eEEEE
Q 011770 78 --------------------GVDCVFHVASYGMSGKEM---LQFGRVDEVNINGTCHVIEACLEFGIQ-------RLVYV 127 (478)
Q Consensus 78 --------------------~~D~ViHlAa~~~~~~~~---~~~~~~~~vNv~gt~nll~aa~~~~v~-------r~V~~ 127 (478)
..|.+|-+|++...+.-. .+.+..+++-+-..++++-..++.+.. ++|..
T Consensus 473 Ig~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLP 552 (866)
T COG4982 473 IGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLP 552 (866)
T ss_pred hccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEec
Confidence 247899999975544210 112233344444445555555554321 35555
Q ss_pred eccce-eeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcC
Q 011770 128 STYNV-VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNG 174 (478)
Q Consensus 128 SS~~v-~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~ 174 (478)
.|.+- .||+ ...|+.+|+..|.++..++.
T Consensus 553 gSPNrG~FGg------------------DGaYgEsK~aldav~~RW~s 582 (866)
T COG4982 553 GSPNRGMFGG------------------DGAYGESKLALDAVVNRWHS 582 (866)
T ss_pred CCCCCCccCC------------------CcchhhHHHHHHHHHHHhhc
Confidence 55432 1121 25799999999999998875
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.025 Score=52.82 Aligned_cols=105 Identities=23% Similarity=0.356 Sum_probs=69.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--ccc--------------------cccCC--CeEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSH--------------------LLINH--GVHCI 62 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~--------------------~~~~~--~v~~v 62 (478)
..++..+|+|.| .|-+|+.++..|...|..+++++|...-+. ... ....+ .++.+
T Consensus 24 ~~L~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~ 102 (212)
T PRK08644 24 EKLKKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAH 102 (212)
T ss_pred HHHhCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 346678999999 599999999999999997799998762110 000 00112 24445
Q ss_pred EecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccc
Q 011770 63 QGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYN 131 (478)
Q Consensus 63 ~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~ 131 (478)
..++++ +.+.+.++++|+||.|.- |......+.+.|.+. ++ .+|+.|...
T Consensus 103 ~~~i~~-~~~~~~~~~~DvVI~a~D-----------------~~~~r~~l~~~~~~~~~~-p~I~~~~~~ 153 (212)
T PRK08644 103 NEKIDE-DNIEELFKDCDIVVEAFD-----------------NAETKAMLVETVLEHPGK-KLVAASGMA 153 (212)
T ss_pred eeecCH-HHHHHHHcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCC-CEEEeehhh
Confidence 555554 456677889999998842 122233467888888 75 778776543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.017 Score=54.64 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--ccc---------------------cccCCC--eEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSH---------------------LLINHG--VHC 61 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~---------------------~~~~~~--v~~ 61 (478)
..+++.+|+|.| .|-+|+++++.|...|..+++++|...-.. ... ....+. ++.
T Consensus 7 ~~L~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~ 85 (231)
T cd00755 7 EKLRNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDA 85 (231)
T ss_pred HHHhCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 456778999999 689999999999999987788887643211 000 001122 344
Q ss_pred EEecCCCHHHHHHHhc-CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 62 IQGDVVSKIDVEKAAR-GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~-~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
+...++ ++...+.+. ++|+||.+.. |......+.+.|++.++ .+|...+.
T Consensus 86 ~~~~i~-~~~~~~l~~~~~D~VvdaiD-----------------~~~~k~~L~~~c~~~~i-p~I~s~g~ 136 (231)
T cd00755 86 VEEFLT-PDNSEDLLGGDPDFVVDAID-----------------SIRAKVALIAYCRKRKI-PVISSMGA 136 (231)
T ss_pred eeeecC-HhHHHHHhcCCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCC-CEEEEeCC
Confidence 444444 344555554 6899998863 12233457899999986 66665543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.013 Score=57.92 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=70.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--ccCCC-eEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--LINHG-VHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--~~~~~-v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|||.|.|+ |++|+.++..|+..|+ + |+++|+......... ..++. .....+.++-..++++ ++++|+||-+|+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCC
Confidence 47999996 9999999999999886 6 999998654221110 00110 0001111211112333 679999999998
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe-EEEEe
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR-LVYVS 128 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r-~V~~S 128 (478)
.... ...+..+....|..-...+.+...+++.+. +|.+|
T Consensus 79 ~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~t 118 (305)
T TIGR01763 79 LPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118 (305)
T ss_pred CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5322 122345677889999999999988886443 34433
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0099 Score=53.25 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=48.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|+|+|+++.+|..+++.|.++|.+ |++.+|+. +++.+.+.++|+||-+.+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~-V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNAT-VTVCHSKT-----------------------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCE-EEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence 478899999999778899999999999997 99887642 356778899999999887
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 97 ~ 97 (168)
T cd01080 97 K 97 (168)
T ss_pred C
Confidence 4
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.031 Score=51.85 Aligned_cols=89 Identities=26% Similarity=0.325 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+.+++|+|.|| |-+|..-++.|++.|.+ |++++..............+++++.++.... .++++|.||-+-+-
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~-VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~-----dl~~~~lVi~at~d 79 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGAQ-LRVIAEELESELTLLAEQGGITWLARCFDAD-----ILEGAFLVIAATDD 79 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCCE-EEEEcCCCCHHHHHHHHcCCEEEEeCCCCHH-----HhCCcEEEEECCCC
Confidence 56889999995 99999999999999998 9999765442222222344788988887632 35678888744321
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v 121 (478)
. ++| ..+...|++.++
T Consensus 80 -----~--------~ln----~~i~~~a~~~~i 95 (205)
T TIGR01470 80 -----E--------ELN----RRVAHAARARGV 95 (205)
T ss_pred -----H--------HHH----HHHHHHHHHcCC
Confidence 1 122 247888888775
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.021 Score=47.48 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=53.3
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
|+|.|. |-+|..+++.|.+.+.+ |+++++++... ......++.++.||.+|++.++++ +++++.|+=+..
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~-vvvid~d~~~~--~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGID-VVVIDRDPERV--EELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSE-EEEEESSHHHH--HHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCE-EEEEECCcHHH--HHHHhcccccccccchhhhHHhhcCccccCEEEEccC
Confidence 578885 89999999999997767 99998875421 233455689999999999999874 467898887763
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.032 Score=50.39 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=63.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--cc--------------------ccccCC--CeEEEEecCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WS--------------------HLLINH--GVHCIQGDVVS 68 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~--------------------~~~~~~--~v~~v~gDl~d 68 (478)
+|+|.| .|-+|++++..|...|..+++.+|...-+. .. .....+ +++.+...+.+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 589999 599999999999999997799998764110 00 000112 34445555544
Q ss_pred HHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccc
Q 011770 69 KIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYN 131 (478)
Q Consensus 69 ~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~ 131 (478)
+.+.+.++++|+||.+.. |...-..+.+.|.+. ++ .+|+.+...
T Consensus 80 -~~~~~~l~~~DlVi~~~d-----------------~~~~r~~i~~~~~~~~~i-p~i~~~~~~ 124 (174)
T cd01487 80 -NNLEGLFGDCDIVVEAFD-----------------NAETKAMLAESLLGNKNK-PVVCASGMA 124 (174)
T ss_pred -hhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHHCCC-CEEEEehhh
Confidence 557778899999999842 111223466777776 65 677765443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0054 Score=56.23 Aligned_cols=68 Identities=25% Similarity=0.217 Sum_probs=44.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
||++.|. |+|-||+.|++.|.+.||+ |+.-.|+.++.........+.. -...+.+++.+.+|+||-..
T Consensus 1 m~~~~i~-GtGniG~alA~~~a~ag~e-V~igs~r~~~~~~a~a~~l~~~------i~~~~~~dA~~~aDVVvLAV 68 (211)
T COG2085 1 MMIIAII-GTGNIGSALALRLAKAGHE-VIIGSSRGPKALAAAAAALGPL------ITGGSNEDAAALADVVVLAV 68 (211)
T ss_pred CcEEEEe-ccChHHHHHHHHHHhCCCe-EEEecCCChhHHHHHHHhhccc------cccCChHHHHhcCCEEEEec
Confidence 3555555 5899999999999999999 8888777664322111111111 11234566788899999765
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.018 Score=58.77 Aligned_cols=104 Identities=24% Similarity=0.313 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--c--------------c-------ccccCCC--eEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--W--------------S-------HLLINHG--VHCI 62 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~--------------~-------~~~~~~~--v~~v 62 (478)
.++.++|+|.| +|-+|++++..|...|..+++++|...-.. . + .....+. ++.+
T Consensus 132 ~l~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 210 (376)
T PRK08762 132 RLLEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV 210 (376)
T ss_pred HHhcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46678999998 588999999999999997799998762110 0 0 0001122 3344
Q ss_pred EecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 63 QGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 63 ~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
...+. .+.+.+.++++|+||++..- ...-..+-++|++.++ .+|+.++..
T Consensus 211 ~~~~~-~~~~~~~~~~~D~Vv~~~d~-----------------~~~r~~ln~~~~~~~i-p~i~~~~~g 260 (376)
T PRK08762 211 QERVT-SDNVEALLQDVDVVVDGADN-----------------FPTRYLLNDACVKLGK-PLVYGAVFR 260 (376)
T ss_pred eccCC-hHHHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEecc
Confidence 44444 35577788899999998741 1111236688999996 788887654
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.01 Score=60.20 Aligned_cols=109 Identities=10% Similarity=0.024 Sum_probs=69.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCce----EEE--E--ecCCCCccccc--cc------CCCeEEEEecCCCHHHHHH
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQ----VRA--F--DLRTNSPWSHL--LI------NHGVHCIQGDVVSKIDVEK 74 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~----V~~--l--~r~~~~~~~~~--~~------~~~v~~v~gDl~d~~~l~~ 74 (478)
.-||.|+|++|.||++++-.|...|.-. |.. + |+..+...... .. ..++.+. . .| .+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~-~--~~----y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG-I--DP----YE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe-c--CC----HH
Confidence 4589999999999999999999876521 333 3 55444221100 00 0112111 1 12 35
Q ss_pred HhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CC-eEEEEe
Q 011770 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQ-RLVYVS 128 (478)
Q Consensus 75 ~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~-r~V~~S 128 (478)
.++++|+||-+||.... +..+..+..+.|+.-.+.+.+...++. .. ++|.+|
T Consensus 117 ~~kdaDIVVitAG~prk--pg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 117 VFEDADWALLIGAKPRG--PGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred HhCCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 67899999999996422 223567788999999999999999954 33 344444
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.013 Score=56.99 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=47.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
..++++|+|.|++|.+|+.++..|.++|.. |++++++. .++.+.++++|+||++.+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gat-Vtv~~~~t-----------------------~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANAT-VTICHSRT-----------------------QNLPELVKQADIIVGAVG 211 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCE-EEEEeCCc-----------------------hhHHHHhccCCEEEEccC
Confidence 468899999999999999999999999996 99987531 235666789999999986
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.017 Score=59.98 Aligned_cols=76 Identities=24% Similarity=0.229 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcC----------------CChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH
Q 011770 8 GIEGKTFLVTGG----------------LGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71 (478)
Q Consensus 8 ~~~~~~ILVTGa----------------tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~ 71 (478)
.+++++||||+| ||-.|.+|++++..+|++ |+.+.- +. ....+.+++++.. ...++
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~-VtlI~G-p~----~~~~p~~v~~i~V--~ta~e 324 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAE-VTLISG-PV----DLADPQGVKVIHV--ESARQ 324 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCc-EEEEeC-Cc----CCCCCCCceEEEe--cCHHH
Confidence 478999999986 699999999999999999 999852 22 1123456776644 45555
Q ss_pred HHHHhc---CcCEEEEcccCCCC
Q 011770 72 VEKAAR---GVDCVFHVASYGMS 91 (478)
Q Consensus 72 l~~~l~---~~D~ViHlAa~~~~ 91 (478)
+.++++ ..|++||+||....
T Consensus 325 M~~av~~~~~~Di~I~aAAVaDy 347 (475)
T PRK13982 325 MLAAVEAALPADIAIFAAAVADW 347 (475)
T ss_pred HHHHHHhhCCCCEEEEeccccce
Confidence 555553 37999999997543
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.015 Score=59.33 Aligned_cols=67 Identities=25% Similarity=0.281 Sum_probs=53.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
|++|+|.|| |.+|+-++..+.+.|++ |+++|..+..+.. .- .-+++.+|..|.+.+.++.+.+|+|.
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~-v~~~d~~~~~pa~---~~-ad~~~~~~~~D~~~l~~~a~~~dvit 68 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYK-VIVLDPDPDSPAA---QV-ADEVIVADYDDVAALRELAEQCDVIT 68 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCE-EEEEeCCCCCchh---Hh-CceEEecCCCCHHHHHHHHhcCCEEE
Confidence 578999997 89999999999999999 9999876543211 11 12456789999999999999999874
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.02 Score=62.70 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=69.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCC--ccc----------------------ccccCCCeEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNS--PWS----------------------HLLINHGVHC 61 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~--~~~----------------------~~~~~~~v~~ 61 (478)
..+++.+|+|.|. | +|++++..|...|. .+++++|...-+ +.. .....-.++.
T Consensus 103 ~~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 3467789999999 8 99999999999995 448887754211 000 0001123566
Q ss_pred EEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
+...++ .+.+.++++++|+||.|.- |...-..+-++|.++++ .+|+.|+
T Consensus 181 ~~~~i~-~~n~~~~l~~~DlVvD~~D-----------------~~~~R~~ln~~a~~~~i-P~i~~~~ 229 (722)
T PRK07877 181 FTDGLT-EDNVDAFLDGLDVVVEECD-----------------SLDVKVLLREAARARRI-PVLMATS 229 (722)
T ss_pred EeccCC-HHHHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEcC
Confidence 666666 5778889999999999873 22222346688999987 6777775
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.037 Score=56.16 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC--cccc---------------------cccCC--CeEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS--PWSH---------------------LLINH--GVHC 61 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~--~~~~---------------------~~~~~--~v~~ 61 (478)
..++..+|+|.| .|-+|++++..|...|..+++++|...-. .... ....+ .++.
T Consensus 37 ~~l~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 115 (370)
T PRK05600 37 ERLHNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA 115 (370)
T ss_pred HHhcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence 346678999999 58999999999999998669988875221 0000 00112 2455
Q ss_pred EEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
+...++ .+.+.+.++++|+||.|.. |...-..+-++|.+.++ .+|+.+...
T Consensus 116 ~~~~i~-~~~~~~~~~~~DlVid~~D-----------------n~~~r~~in~~~~~~~i-P~v~~~~~g 166 (370)
T PRK05600 116 LRERLT-AENAVELLNGVDLVLDGSD-----------------SFATKFLVADAAEITGT-PLVWGTVLR 166 (370)
T ss_pred eeeecC-HHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEEec
Confidence 555554 4557778899999999874 12222345678899986 688877654
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0071 Score=62.36 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=71.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc---CCc---eEEEEecCCCCccc--------cc--ccCCCeEEEEecCCCHHHHHH
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR---GAY---QVRAFDLRTNSPWS--------HL--LINHGVHCIQGDVVSKIDVEK 74 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~---G~~---~V~~l~r~~~~~~~--------~~--~~~~~v~~v~gDl~d~~~l~~ 74 (478)
.-+|+||||+|.||.+|+-.+.+= |.+ .++.+|........ +. ....++... .| -.+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~------~~e 195 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TD------LDV 195 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-EC------CHH
Confidence 357999999999999999988752 432 15566653121100 00 001123222 21 246
Q ss_pred HhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC--CeEEEEec
Q 011770 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVST 129 (478)
Q Consensus 75 ~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v--~r~V~~SS 129 (478)
+++++|+||-+||.... .-.+..+..+.|+.-.+.+.++..++.. .+++.+.|
T Consensus 196 a~~daDvvIitag~prk--~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 196 AFKDAHVIVLLDDFLIK--EGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred HhCCCCEEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 78899999999996322 2235677889999999999999999876 56666654
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.023 Score=58.22 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--ccc---------------------cccCCC--eEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSH---------------------LLINHG--VHCI 62 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~---------------------~~~~~~--v~~v 62 (478)
.++..+|+|.| .|-+|++++..|...|..+++++|...-.. ... ....+. ++.+
T Consensus 39 ~L~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 39 RLKNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHhcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 35678999999 588999999999999997788887643211 000 001222 4445
Q ss_pred EecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 63 QGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 63 ~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
..+++. +...+.++++|+||.|.. |...-..+-++|.+.++ .+|+.++...
T Consensus 118 ~~~i~~-~~~~~~~~~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~-p~v~~~~~g~ 168 (392)
T PRK07878 118 EFRLDP-SNAVELFSQYDLILDGTD-----------------NFATRYLVNDAAVLAGK-PYVWGSIYRF 168 (392)
T ss_pred eccCCh-hHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEeccC
Confidence 555554 456678889999998763 11222236688999986 6888877664
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.045 Score=52.76 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--ccc---------------------cccCCC--eEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSH---------------------LLINHG--VHCI 62 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~---------------------~~~~~~--v~~v 62 (478)
.++..+|+|.| .|-+|+++++.|...|..+++++|...-.. ... ....+. ++.+
T Consensus 27 kL~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i 105 (268)
T PRK15116 27 LFADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV 105 (268)
T ss_pred HhcCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence 46678999999 599999999999999976688888652211 000 001122 3333
Q ss_pred EecCCCHHHHHHHhc-CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 63 QGDVVSKIDVEKAAR-GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 63 ~gDl~d~~~l~~~l~-~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
. +..+++...+.+. ++|+||.+... +..-..+.+.|+++++ .+|..+..
T Consensus 106 ~-~~i~~e~~~~ll~~~~D~VIdaiD~-----------------~~~k~~L~~~c~~~~i-p~I~~gGa 155 (268)
T PRK15116 106 D-DFITPDNVAEYMSAGFSYVIDAIDS-----------------VRPKAALIAYCRRNKI-PLVTTGGA 155 (268)
T ss_pred e-cccChhhHHHHhcCCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEECCc
Confidence 2 2224555666664 68999988641 1223358889999987 66655443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.013 Score=59.69 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+++|.|.||+|.+|..+++.|.+.|++ |++.+++.. ++.++++.++|+||-|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~-V~~~d~~~~----------------------~~~~~~~~~aDlVilavP 151 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQ-VRILEQDDW----------------------DRAEDILADAGMVIVSVP 151 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCe-EEEeCCCcc----------------------hhHHHHHhcCCEEEEeCc
Confidence 3578999999999999999999999998 999987421 134556778999999874
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.032 Score=55.06 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=68.0
Q ss_pred EEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccc--c---C--CCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 14 FLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLL--I---N--HGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~--~---~--~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
|.|.|+ |.||+.++..|+..|. ++++++|+.......... . . ...+...+ .| .+.++++|+||-+
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~----~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD----YADAADADIVVIT 73 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC----HHHhCCCCEEEEc
Confidence 467885 8999999999999883 239999987653211100 0 0 11122211 22 3478899999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
|+.... ...+..+....|+.-.+.+.+..++++.+-+|
T Consensus 74 ag~p~~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~v 111 (300)
T cd00300 74 AGAPRK--PGETRLDLINRNAPILRSVITNLKKYGPDAII 111 (300)
T ss_pred CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 985322 22345677789999999999999998755433
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.01 Score=52.21 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.++++|+|+|+ |.+|..+++.|.+.| ++ |++.+|+........ ..-+...+..+..+. .+.++++|+||.+..
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~-v~v~~r~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~Dvvi~~~~ 90 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAK-IVIVNRTLEKAKALA-ERFGELGIAIAYLDL---EELLAEADLIINTTP 90 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCE-EEEEcCCHHHHHHHH-HHHhhcccceeecch---hhccccCCEEEeCcC
Confidence 45789999997 999999999999986 55 999988654221101 111111112233333 344789999999987
Q ss_pred CC
Q 011770 88 YG 89 (478)
Q Consensus 88 ~~ 89 (478)
..
T Consensus 91 ~~ 92 (155)
T cd01065 91 VG 92 (155)
T ss_pred CC
Confidence 54
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.071 Score=53.25 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
++++|.|.||||++|..|++.|.++.|. ++..+....+...........+.+- |+ +. ..++++|+||-++.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~--~~---~~--~~~~~~Dvvf~a~p 75 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ--DA---AE--FDWSQAQLAFFVAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE--eC---ch--hhccCCCEEEECCC
Confidence 4679999999999999999999886443 3555543322111111111111111 22 11 12368999998875
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
.. .+..+...+.+.|+ ++|=.|+..
T Consensus 76 ~~------------------~s~~~~~~~~~~g~-~VIDlS~~f 100 (336)
T PRK08040 76 RE------------------ASAAYAEEATNAGC-LVIDSSGLF 100 (336)
T ss_pred HH------------------HHHHHHHHHHHCCC-EEEECChHh
Confidence 21 12235556666776 677777654
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.072 Score=50.90 Aligned_cols=97 Identities=24% Similarity=0.227 Sum_probs=67.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~ 89 (478)
|+|||.|||+ =|+.|++.|.++|+ |++-.-.+-............+.+.|-+.|.+.+.+.++ ++++||+..-+.
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~--v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPf 77 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY--VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPF 77 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC--EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCch
Confidence 6899999987 58999999999996 222212221111011122467888899889999999995 799999976421
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
. ..-++|+.++|++.|++.+-|
T Consensus 78 ---A------------~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 78 ---A------------AEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ---H------------HHHHHHHHHHHhhcCcceEEE
Confidence 1 235778999999999865443
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.025 Score=54.95 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=49.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|+|+|+++.+|+.++..|.++|.. |+.++++. .++.+.++++|+||-+++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gat-Vtv~~s~t-----------------------~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNAS-VTILHSRS-----------------------KDMASYLKDADVIVSAVG 210 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCCc-----------------------hhHHHHHhhCCEEEECCC
Confidence 478899999999999999999999999998 99887532 246778889999999987
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 211 ~ 211 (286)
T PRK14175 211 K 211 (286)
T ss_pred C
Confidence 4
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.015 Score=52.64 Aligned_cols=70 Identities=21% Similarity=0.250 Sum_probs=48.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
..+.+++|.|.| .|-||+++++.|..-|.+ |++.+++..... .....+++ ..+++++++.+|+|+.+.
T Consensus 32 ~~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~-V~~~d~~~~~~~--~~~~~~~~--------~~~l~ell~~aDiv~~~~ 99 (178)
T PF02826_consen 32 RELRGKTVGIIG-YGRIGRAVARRLKAFGMR-VIGYDRSPKPEE--GADEFGVE--------YVSLDELLAQADIVSLHL 99 (178)
T ss_dssp S-STTSEEEEES-TSHHHHHHHHHHHHTT-E-EEEEESSCHHHH--HHHHTTEE--------ESSHHHHHHH-SEEEE-S
T ss_pred cccCCCEEEEEE-EcCCcCeEeeeeecCCce-eEEecccCChhh--hcccccce--------eeehhhhcchhhhhhhhh
Confidence 357789999999 699999999999999998 999998765221 01111221 124677888899998877
Q ss_pred cC
Q 011770 87 SY 88 (478)
Q Consensus 87 a~ 88 (478)
..
T Consensus 100 pl 101 (178)
T PF02826_consen 100 PL 101 (178)
T ss_dssp SS
T ss_pred cc
Confidence 64
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.02 Score=56.35 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=51.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+.+++++|.|. |-+|..++..|...|.+ |++++|++... ......+.+++ +.+++.+.++++|+||+++.
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~-V~v~~r~~~~~--~~~~~~G~~~~-----~~~~l~~~l~~aDiVI~t~p 219 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGAN-VTVGARKSAHL--ARITEMGLSPF-----HLSELAEEVGKIDIIFNTIP 219 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCE-EEEEECCHHHH--HHHHHcCCeee-----cHHHHHHHhCCCCEEEECCC
Confidence 46789999995 88999999999999997 99999885421 11112233332 33567788889999999863
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.078 Score=52.31 Aligned_cols=101 Identities=24% Similarity=0.296 Sum_probs=68.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c---------------------cccCC--CeEEEEecCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H---------------------LLINH--GVHCIQGDVV 67 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~---------------------~~~~~--~v~~v~gDl~ 67 (478)
+|||.|+ |-+|+.+++.|...|..+++++|...-+... . ....+ .++.+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 5899995 9999999999999999879988865332100 0 00012 3555667777
Q ss_pred CHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 68 SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 68 d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+.....+.+++.|+||.+.. |...-..+-+.|+++++ .+|..++.+.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~D-----------------n~~ar~~in~~c~~~~i-p~I~~gt~G~ 126 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALD-----------------NLAARRHVNKMCLAADV-PLIESGTTGF 126 (312)
T ss_pred CccchHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHCCC-CEEEEecCcc
Confidence 64434567788899988753 22333456788888886 6888877664
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.065 Score=53.88 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=26.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcC-CceEEEEe
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRG-AYQVRAFD 43 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~ 43 (478)
++|.|+|++|++|++|++.|.+.. .+ |..+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~-l~~v~ 32 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFE-LAKVV 32 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCce-EEEEE
Confidence 479999999999999999988866 45 77773
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.018 Score=56.31 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=51.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++++|+|. |-+|+.+++.|...|.+ |++.+|++.... .....+.+.+ +.+++.+.++++|+||++..
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~-V~v~~R~~~~~~--~~~~~g~~~~-----~~~~l~~~l~~aDiVint~P 218 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGAR-VFVGARSSADLA--RITEMGLIPF-----PLNKLEEKVAEIDIVINTIP 218 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHHCCCeee-----cHHHHHHHhccCCEEEECCC
Confidence 467899999996 88999999999999997 999988754211 1111122221 34567788899999999874
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.027 Score=55.93 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=48.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---------ccCCCe--EEEEecCCCHHHHHHHhcCc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---------LINHGV--HCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---------~~~~~v--~~v~gDl~d~~~l~~~l~~~ 79 (478)
.++|.|.| +|-+|+.++..++..|++ |++.|+++....... ....+. .-....++-..+++++++++
T Consensus 7 i~~VaVIG-aG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~a 84 (321)
T PRK07066 7 IKTFAAIG-SGVIGSGWVARALAHGLD-VVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA 84 (321)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCC
Confidence 46899999 599999999999999999 999998754211000 000000 00011122223467788999
Q ss_pred CEEEEccc
Q 011770 80 DCVFHVAS 87 (478)
Q Consensus 80 D~ViHlAa 87 (478)
|.|+-+..
T Consensus 85 DlViEavp 92 (321)
T PRK07066 85 DFIQESAP 92 (321)
T ss_pred CEEEECCc
Confidence 99999874
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.041 Score=59.73 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=57.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
.++|+|.| .|-+|+++++.|.++|++ |+++|.++..- ......+...+.||.+|++.++++ ++++|+||-+-
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~~-vvvID~d~~~v--~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLMANKMR-ITVLERDISAV--NLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHHhCCCC-EEEEECCHHHH--HHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 35789998 699999999999999999 99999775522 223346788999999999998875 46789888664
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.069 Score=53.83 Aligned_cols=95 Identities=17% Similarity=0.073 Sum_probs=54.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHH-cCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVR-RGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~-~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
++|.|.||||++|+.|++.|++ .... +++.++.+.+....... .+-.....++.|.++ ++++|+||-+++.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f--~g~~~~v~~~~~~~~----~~~~Divf~a~~~ 75 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSF--GGKEGTLQDAFDIDA----LKKLDIIITCQGG 75 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCccccc--CCCcceEEecCChhH----hcCCCEEEECCCH
Confidence 6899999999999999985554 4442 25555443222111111 111223344444443 3689999998852
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEecc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTY 130 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~ 130 (478)
. -+..+...+.+.|++ .+|=.||.
T Consensus 76 ~------------------~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 76 D------------------YTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred H------------------HHHHHHHHHHhCCCCeEEEECChH
Confidence 1 133456666677864 35555554
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.053 Score=53.50 Aligned_cols=83 Identities=12% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
|.+|.|.||||++|..|++.|.+...-++..+..+... |+.+ .++.++++|+||-+....
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~----------------~~~~---~~~~~~~~DvvFlalp~~- 61 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK----------------DAAA---RRELLNAADVAILCLPDD- 61 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC----------------cccC---chhhhcCCCEEEECCCHH-
Confidence 57899999999999999998887653224444322110 1111 233456899999877421
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
-...+...+.+.|+ ++|=.|+..
T Consensus 62 -----------------~s~~~~~~~~~~g~-~VIDlSadf 84 (313)
T PRK11863 62 -----------------AAREAVALIDNPAT-RVIDASTAH 84 (313)
T ss_pred -----------------HHHHHHHHHHhCCC-EEEECChhh
Confidence 12234455555665 677777754
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.087 Score=48.65 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=53.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecC---CCCcccc------c-------------ccCC--CeEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR---TNSPWSH------L-------------LINH--GVHCI 62 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~---~~~~~~~------~-------------~~~~--~v~~v 62 (478)
..++.++|+|.|+ |-+|+.++..|...|..+++++|.+ .+.-.+. . ...+ .++.+
T Consensus 17 ~~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~ 95 (200)
T TIGR02354 17 QKLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAY 95 (200)
T ss_pred HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 3467789999996 8899999999999999659999876 2211000 0 0011 24455
Q ss_pred EecCCCHHHHHHHhcCcCEEEEc
Q 011770 63 QGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 63 ~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
..+++ .+.+.++++++|+||.+
T Consensus 96 ~~~i~-~~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 96 DEKIT-EENIDKFFKDADIVCEA 117 (200)
T ss_pred eeeCC-HhHHHHHhcCCCEEEEC
Confidence 56665 45677888899999988
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.049 Score=55.77 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=69.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--ccc---------------------cccCC--CeEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSH---------------------LLINH--GVHCI 62 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~---------------------~~~~~--~v~~v 62 (478)
.++..+|+|.| .|-+|++++..|...|..+++++|...-.. ... ....+ .++.+
T Consensus 35 ~L~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 35 RLKAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHhcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46678999999 588999999999999997788887643211 000 00112 24555
Q ss_pred EecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 63 QGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 63 ~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
...++. +...+.++++|+||.|..- ...-..+-++|.+.++ .+|+.+...-
T Consensus 114 ~~~~~~-~~~~~~~~~~D~Vvd~~d~-----------------~~~r~~ln~~~~~~~~-p~v~~~~~g~ 164 (390)
T PRK07411 114 ETRLSS-ENALDILAPYDVVVDGTDN-----------------FPTRYLVNDACVLLNK-PNVYGSIFRF 164 (390)
T ss_pred ecccCH-HhHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEEccC
Confidence 555554 4466778899999998741 1112235578888885 7888776553
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.1 Score=49.31 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=67.0
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--cccc---------------------ccC--CCeEEEEecCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSHL---------------------LIN--HGVHCIQGDVV 67 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~~---------------------~~~--~~v~~v~gDl~ 67 (478)
+|+|.| .|-+|+.+++.|...|..+++++|...-+. ...+ ... -+++.+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589998 699999999999999998788888643211 0000 001 12556667775
Q ss_pred CHHHH-HHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 68 SKIDV-EKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 68 d~~~l-~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+.++. .+.++++|+||.+.- |...-..+-+.|.+.++ .+|..++.+-
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~i-plI~~g~~G~ 127 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALD-----------------NIIARRYVNGMLIFLIV-PLIESGTEGF 127 (234)
T ss_pred hhhhchHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEcccCC
Confidence 54433 356778898888752 33344557788888886 7888777553
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.026 Score=57.33 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=55.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
....+|+|+|+ |-+|...++.|...|.+ |+++|++...... ....-+ ..+..+..+.+.+.+.+.++|+||.++..
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~-V~v~d~~~~~~~~-l~~~~g-~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGAT-VTILDINIDRLRQ-LDAEFG-GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCCe-EEEEECCHHHHHH-HHHhcC-ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 35578999986 99999999999999998 9999987542110 000111 12334566778899999999999998854
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.066 Score=55.92 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc--CCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI--NHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~--~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+.+++|+|+|+ |-.|..+++.|.++|++ |.+.|..+......... ..++.+..++..+ ..+.++|.||...
T Consensus 3 ~~~~~~~v~G~-g~~G~~~a~~l~~~g~~-v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~-----~~~~~~d~vv~sp 75 (445)
T PRK04308 3 FQNKKILVAGL-GGTGISMIAYLRKNGAE-VAAYDAELKPERVAQIGKMFDGLVFYTGRLKD-----ALDNGFDILALSP 75 (445)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCCCchhHHHHhhccCCcEEEeCCCCH-----HHHhCCCEEEECC
Confidence 44679999997 57999999999999998 99998765432111111 1367776665331 1336789999988
Q ss_pred cCCC
Q 011770 87 SYGM 90 (478)
Q Consensus 87 a~~~ 90 (478)
|+..
T Consensus 76 gi~~ 79 (445)
T PRK04308 76 GISE 79 (445)
T ss_pred CCCC
Confidence 8743
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.021 Score=52.84 Aligned_cols=70 Identities=24% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh-cCcCEEEEc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA-RGVDCVFHV 85 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l-~~~D~ViHl 85 (478)
.++++|+|+|+|. |-+|+++++.|.+.|++ |++.|++...... ....-+.+.+ |. + +++ .++|+++.+
T Consensus 24 ~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~-Vvv~D~~~~~~~~-~~~~~g~~~v--~~---~---~l~~~~~Dv~vp~ 92 (200)
T cd01075 24 DSLEGKTVAVQGL-GKVGYKLAEHLLEEGAK-LIVADINEEAVAR-AAELFGATVV--AP---E---EIYSVDADVFAPC 92 (200)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEcCCHHHHHH-HHHHcCCEEE--cc---h---hhccccCCEEEec
Confidence 4578899999996 79999999999999998 9998876542111 1111123322 21 2 223 279999998
Q ss_pred cc
Q 011770 86 AS 87 (478)
Q Consensus 86 Aa 87 (478)
|.
T Consensus 93 A~ 94 (200)
T cd01075 93 AL 94 (200)
T ss_pred cc
Confidence 85
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.035 Score=54.65 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeE-E--EEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH-C--IQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~-~--v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+|+||.|.||+||.|..|++.|.....-++...+.+...........++.. . ..-..-|.+.+ ..++||+||-+-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEec
Confidence 367999999999999999999987644235555443321111111222222 1 11111222322 355799999886
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
..+ .+ ..+.......|+ ++|=+|+..
T Consensus 79 Phg---~s---------------~~~v~~l~~~g~-~VIDLSadf 104 (349)
T COG0002 79 PHG---VS---------------AELVPELLEAGC-KVIDLSADF 104 (349)
T ss_pred Cch---hH---------------HHHHHHHHhCCC-eEEECCccc
Confidence 422 11 124444445565 477777753
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.011 Score=61.06 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
+|+|.|.| .|++|..++..|.+.|++ |+++|+++.
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~-V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQ-VIGVDINQH 37 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCE-EEEEeCCHH
Confidence 47899998 799999999999999998 999998765
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.04 Score=56.49 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlA 86 (478)
.+|+|+|+|+ |..|..++..+.+.|++ |++++..+..... . .. -.++..|..|.+.+.++++ ++|.|+-..
T Consensus 11 ~~~~ilIiG~-g~~~~~~~~a~~~~G~~-v~~~~~~~~~~~~-~--~a-d~~~~~~~~d~~~l~~~~~~~~id~vi~~~ 83 (395)
T PRK09288 11 SATRVMLLGS-GELGKEVAIEAQRLGVE-VIAVDRYANAPAM-Q--VA-HRSHVIDMLDGDALRAVIEREKPDYIVPEI 83 (395)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCCCCchH-H--hh-hheEECCCCCHHHHHHHHHHhCCCEEEEee
Confidence 4579999985 79999999999999999 9999876542111 1 11 1356788899999988887 899988643
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.15 Score=51.00 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHH-cCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVR-RGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~-~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+.++|.|.||||++|+.|++.|.+ ...+ ++..+....+...........+.+ -++ |+++ ++++|+||-++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v--~~~-~~~~----~~~~Divf~a~ 76 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIII--QEA-KINS----FEGVDIAFFSA 76 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEE--EeC-CHHH----hcCCCEEEECC
Confidence 346899999999999999999984 5544 244443332211111111112222 222 3332 36899999888
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
+.. -+..+...+.+.|+ .+|=.||..
T Consensus 77 ~~~------------------~s~~~~~~~~~~G~-~VID~Ss~f 102 (347)
T PRK06728 77 GGE------------------VSRQFVNQAVSSGA-IVIDNTSEY 102 (347)
T ss_pred ChH------------------HHHHHHHHHHHCCC-EEEECchhh
Confidence 521 12235555666775 666666654
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.086 Score=50.04 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=54.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCccc-ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWS-HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~-~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
|+||.|.|++|=.|+.+++.+.+.. .+=+-+++|.++.... ....-.++.....-+.| ++.....++|++|.+..+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~--~~~~~~~~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTD--DLLLVKADADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeec--chhhcccCCCEEEECCCc
Confidence 5789999999999999999998875 4424455655442100 00000111111112222 144455678999988652
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v 121 (478)
.++...++.|.++++
T Consensus 80 ------------------~~~~~~l~~~~~~~~ 94 (266)
T COG0289 80 ------------------EATLENLEFALEHGK 94 (266)
T ss_pred ------------------hhhHHHHHHHHHcCC
Confidence 245567888888885
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.064 Score=45.14 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=41.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHc-CCceEEEE-ecCCCCcccccccCCCeE-EEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 13 TFLVTGGLGHVGSALCLELVRR-GAYQVRAF-DLRTNSPWSHLLINHGVH-CIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l-~r~~~~~~~~~~~~~~v~-~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|+.|+|++|.+|..+++.|.+. +++ +.++ +++.+.........+.+. ....++. .+.++ ..++|+||-|..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~-l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~ 74 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFE-VVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALP 74 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCce-EEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCC
Confidence 5899999999999999999984 777 7777 433221111111122222 1112222 22233 257899998875
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.04 Score=56.45 Aligned_cols=37 Identities=24% Similarity=0.152 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
++|+|||||++..+|-++++.|.+.|++ |+++|..+.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~-Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHT-VILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCch
Confidence 4689999999999999999999999999 999987653
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.043 Score=54.14 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred EEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--ccCC-CeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 14 FLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--LINH-GVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--~~~~-~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
|.|+|+ |.+|+.++..|...|. + |+++|+++....... ..+. ........++...+. +.++++|+||-+++..
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~e-V~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p 77 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGD-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcE-EEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCC
Confidence 568997 9999999999988876 6 999998765221000 0000 000000111111112 3478999999999853
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeE
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~ 124 (478)
.. ...+..+....|+.-.+.+++...+...+..
T Consensus 78 ~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~ 110 (300)
T cd01339 78 RK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAI 110 (300)
T ss_pred CC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 22 1223344566788888888888888775544
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.048 Score=48.33 Aligned_cols=57 Identities=28% Similarity=0.446 Sum_probs=44.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+++|+|+|.|.++.+|+-|+..|.++|.. |+..+.... ++++..+.+|+||-.+|
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at-Vt~~h~~T~-----------------------~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGAT-VTICHSKTK-----------------------NLQEITRRADIVVSAVG 88 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-E-EEEE-TTSS-----------------------SHHHHHTTSSEEEE-SS
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCe-EEeccCCCC-----------------------cccceeeeccEEeeeec
Confidence 478999999999999999999999999998 998864432 35677889999999887
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 89 ~ 89 (160)
T PF02882_consen 89 K 89 (160)
T ss_dssp S
T ss_pred c
Confidence 4
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.032 Score=54.98 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|.|.| .|-||+.+++.|...|.+ |++.+|+... .++... ..+++++++++|+|+.+..
T Consensus 119 ~L~gktvgIiG-~G~IG~~vA~~l~afG~~-V~~~~r~~~~--------~~~~~~------~~~l~ell~~aDiv~~~lp 182 (303)
T PRK06436 119 LLYNKSLGILG-YGGIGRRVALLAKAFGMN-IYAYTRSYVN--------DGISSI------YMEPEDIMKKSDFVLISLP 182 (303)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCE-EEEECCCCcc--------cCcccc------cCCHHHHHhhCCEEEECCC
Confidence 57789999999 799999999988888998 9999876431 111100 1247788899999988875
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecccee
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~ 133 (478)
.+.... . +. ....++.+++ | .-+|.+|...++
T Consensus 183 ~t~~T~------~-----li-~~~~l~~mk~-g-a~lIN~sRG~~v 214 (303)
T PRK06436 183 LTDETR------G-----MI-NSKMLSLFRK-G-LAIINVARADVV 214 (303)
T ss_pred CCchhh------c-----Cc-CHHHHhcCCC-C-eEEEECCCcccc
Confidence 321110 0 11 1234555443 3 267888877663
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.011 Score=52.64 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=45.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|++|.+.| .|-+|+.+++.|.+.|++ |++.||++... ......+++.. ++..++++++|+||-|-.
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~-v~~~d~~~~~~--~~~~~~g~~~~-------~s~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYE-VTVYDRSPEKA--EALAEAGAEVA-------DSPAEAAEQADVVILCVP 66 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTE-EEEEESSHHHH--HHHHHTTEEEE-------SSHHHHHHHBSEEEE-SS
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCe-EEeeccchhhh--hhhHHhhhhhh-------hhhhhHhhcccceEeecc
Confidence 57999999 699999999999999999 99999875422 11222333322 245666777899998763
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.064 Score=58.62 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=69.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC--ccc-----------------------ccccCCCeEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS--PWS-----------------------HLLINHGVHC 61 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~--~~~-----------------------~~~~~~~v~~ 61 (478)
..+.+.+|+|.| .|-+|++++..|...|..+++++|...-. +.. .....-.++.
T Consensus 39 ~kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~ 117 (679)
T PRK14851 39 ERLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITP 117 (679)
T ss_pred HHHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 456778999999 68999999999999998767777653211 000 0001123566
Q ss_pred EEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEe
Q 011770 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~S 128 (478)
+...++ .+.+.++++++|+||.+.-.. +...-..+.+.|++.++ .+|+.+
T Consensus 118 ~~~~i~-~~n~~~~l~~~DvVid~~D~~---------------~~~~r~~l~~~c~~~~i-P~i~~g 167 (679)
T PRK14851 118 FPAGIN-ADNMDAFLDGVDVVLDGLDFF---------------QFEIRRTLFNMAREKGI-PVITAG 167 (679)
T ss_pred EecCCC-hHHHHHHHhCCCEEEECCCCC---------------cHHHHHHHHHHHHHCCC-CEEEee
Confidence 767775 456788899999999876310 01122346788999987 566655
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.068 Score=59.91 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=71.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--cc---------------------ccccCC--CeE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WS---------------------HLLINH--GVH 60 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~---------------------~~~~~~--~v~ 60 (478)
+.++.+.+|+|.| .|-+|+.++..|...|..+++++|...-.. .. .....+ .++
T Consensus 327 Q~kL~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~ 405 (989)
T PRK14852 327 QRRLLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIR 405 (989)
T ss_pred HHHHhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEE
Confidence 3456778999999 688999999999999987688777542210 00 000122 345
Q ss_pred EEEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 61 ~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
.+...+ +.+.+.+.++++|+||.+.-.. .+.....+.+.|.+.++ .+|+.++..
T Consensus 406 ~~~~~I-~~en~~~fl~~~DiVVDa~D~~---------------~~~~rr~l~~~c~~~~I-P~I~ag~~G 459 (989)
T PRK14852 406 SFPEGV-AAETIDAFLKDVDLLVDGIDFF---------------ALDIRRRLFNRALELGI-PVITAGPLG 459 (989)
T ss_pred EEecCC-CHHHHHHHhhCCCEEEECCCCc---------------cHHHHHHHHHHHHHcCC-CEEEeeccc
Confidence 555555 4567888899999999876311 11123457788999987 677776643
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.048 Score=50.45 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.+++++|+|.|| |-+|...++.|++.|++ |+++++..............+.+..-++. ...++++|.||-+.
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~-V~VIs~~~~~~l~~l~~~~~i~~~~~~~~-----~~~l~~adlViaaT 78 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAH-IVVISPELTENLVKLVEEGKIRWKQKEFE-----PSDIVDAFLVIAAT 78 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCe-EEEEcCCCCHHHHHHHhCCCEEEEecCCC-----hhhcCCceEEEEcC
Confidence 467899999996 99999999999999998 99987543321111112234555443333 22356789888654
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.052 Score=47.00 Aligned_cols=58 Identities=31% Similarity=0.382 Sum_probs=48.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
-++++++|+|.|.+.-+|..|+..|.++|.. |+..+++.. ++++.++++|+||-..
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gat-V~~~~~~t~-----------------------~l~~~v~~ADIVvsAt 79 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGAT-VYSCDWKTI-----------------------QLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeCCCCc-----------------------CHHHHHhhCCEEEEec
Confidence 3578999999999999999999999999998 998865432 3566788999999888
Q ss_pred cC
Q 011770 87 SY 88 (478)
Q Consensus 87 a~ 88 (478)
+.
T Consensus 80 g~ 81 (140)
T cd05212 80 PK 81 (140)
T ss_pred CC
Confidence 74
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.039 Score=53.92 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=48.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+|+|.|.|.+|.+|+.++..|+++|++ |++.+++.. ++.++.+++|+||-+.+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gat-Vtv~~~~t~-----------------------~l~e~~~~ADIVIsavg 211 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCS-VTVVHSRST-----------------------DAKALCRQADIVVAAVG 211 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEECCCCC-----------------------CHHHHHhcCCEEEEecC
Confidence 578999999999999999999999999999 999965432 35667788999999887
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 212 ~ 212 (301)
T PRK14194 212 R 212 (301)
T ss_pred C
Confidence 4
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.16 Score=51.86 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=54.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
+.+++|.| .|-+|++++++|.++|.+ |++++.+.. ....+++..++.||.+|++.++++ +++++.|+=+.
T Consensus 240 k~HvII~G-~g~lg~~v~~~L~~~g~~-vvVId~d~~----~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 240 KDHFIICG-HSPLAINTYLGLRQRGQA-VTVIVPLGL----EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALR 310 (393)
T ss_pred CCeEEEEC-CChHHHHHHHHHHHCCCC-EEEEECchh----hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence 46799999 589999999999999998 888875422 233445788999999999998874 46788888554
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.079 Score=51.62 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=66.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----------------------ccccCCC--eE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----------------------HLLINHG--VH 60 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----------------------~~~~~~~--v~ 60 (478)
+..+...+|||.| .|-+|..+++.|...|..+|++.|...-.... .....+. ++
T Consensus 14 q~kL~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~ 92 (286)
T cd01491 14 MKKLQKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVT 92 (286)
T ss_pred HHHHhcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEE
Confidence 3446678999999 58899999999999999879988865321100 0001122 33
Q ss_pred EEEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 61 ~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
.+..++ + .+.+.+.|+||.+.. |...-..+-++|+++++ .+|...+...
T Consensus 93 ~~~~~~-~----~~~l~~fdvVV~~~~-----------------~~~~~~~in~~c~~~~i-pfI~a~~~G~ 141 (286)
T cd01491 93 VSTGPL-T----TDELLKFQVVVLTDA-----------------SLEDQLKINEFCHSPGI-KFISADTRGL 141 (286)
T ss_pred EEeccC-C----HHHHhcCCEEEEecC-----------------CHHHHHHHHHHHHHcCC-EEEEEecccc
Confidence 333332 1 245667888888753 11222346688999987 8999888776
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.068 Score=57.54 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=56.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
.+|+|.| .|-+|++++++|.++|++ |+++|.++... ......+...+.||.+|++.++++ ++++|.|+=+.
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g~~-vvvId~d~~~~--~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAGIP-LVVIETSRTRV--DELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCCCC-EEEEECCHHHH--HHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 5789998 699999999999999999 99999775532 223346789999999999988864 35788776543
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.053 Score=54.53 Aligned_cols=76 Identities=29% Similarity=0.290 Sum_probs=50.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc----CcCEEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR----GVDCVFH 84 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~----~~D~ViH 84 (478)
-+++.|||.||+|-+|+..++-+...|...|++....+..+ ....-+... ..|..+++..+...+ ++|+|++
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~---l~k~lGAd~-vvdy~~~~~~e~~kk~~~~~~DvVlD 231 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLE---LVKKLGADE-VVDYKDENVVELIKKYTGKGVDVVLD 231 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHH---HHHHcCCcE-eecCCCHHHHHHHHhhcCCCccEEEE
Confidence 45679999999999999999998888943155553333211 112222222 357777665555554 5999999
Q ss_pred cccC
Q 011770 85 VASY 88 (478)
Q Consensus 85 lAa~ 88 (478)
|++-
T Consensus 232 ~vg~ 235 (347)
T KOG1198|consen 232 CVGG 235 (347)
T ss_pred CCCC
Confidence 9984
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.053 Score=56.40 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=46.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|+|.|+||+|.+|+.+++.|.+.|++ |++.+|++.... ......++.+ ..+..+.++++|+||-+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~-V~v~~r~~~~~~-~~a~~~gv~~-------~~~~~e~~~~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFE-VIVTGRDPKKGK-EVAKELGVEY-------ANDNIDAAKDADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCE-EEEEECChHHHH-HHHHHcCCee-------ccCHHHHhccCCEEEEecC
Confidence 47999999999999999999999998 999998754211 1111112221 1224456778999998764
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.073 Score=52.14 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=31.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++|.|.| +|.+|+.++..|.+.|++ |++.|+++.
T Consensus 3 ~~kIaViG-aG~mG~~iA~~la~~G~~-V~l~d~~~~ 37 (287)
T PRK08293 3 IKNVTVAG-AGVLGSQIAFQTAFHGFD-VTIYDISDE 37 (287)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhcCCe-EEEEeCCHH
Confidence 46899998 599999999999999998 999998754
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.059 Score=53.49 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=52.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
|++|.|.|| |.+|+-++.+-...|++ |+++|-.+..+.. .-.-..+.++..|.+.+.++.++||+|
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~-v~vLdp~~~~PA~----~va~~~i~~~~dD~~al~ela~~~DVi 66 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLGIK-VIVLDPDADAPAA----QVADRVIVAAYDDPEALRELAAKCDVI 66 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcCCE-EEEecCCCCCchh----hcccceeecCCCCHHHHHHHHhhCCEE
Confidence 478999995 99999999999999999 9999866553321 111245677888999999999999987
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.028 Score=55.05 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS 48 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~ 48 (478)
.+++|.|.|+ |.+|+.++..|+..|++ |++.|+++..
T Consensus 4 ~~~~V~ViGa-G~mG~~iA~~~a~~G~~-V~l~d~~~~~ 40 (286)
T PRK07819 4 AIQRVGVVGA-GQMGAGIAEVCARAGVD-VLVFETTEEL 40 (286)
T ss_pred CccEEEEEcc-cHHHHHHHHHHHhCCCE-EEEEECCHHH
Confidence 3468999995 99999999999999999 9999988663
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.077 Score=51.59 Aligned_cols=101 Identities=14% Similarity=0.036 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
.++++.|+|+.| +|+-=++.-.+.|++ |+++|+++.... .....-+.+.+..-..|++.++++.+-.|.++|++.-.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~r-V~vis~~~~kke-ea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~ 257 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMR-VTVISTSSKKKE-EAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL 257 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcE-EEEEeCCchhHH-HHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec
Confidence 689999999999 998888877788999 999998864321 22333455655444448888888877677777776521
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
... ....+++.++..| ++|.++-.
T Consensus 258 -a~~--------------~~~~~~~~lk~~G--t~V~vg~p 281 (360)
T KOG0023|consen 258 -AEH--------------ALEPLLGLLKVNG--TLVLVGLP 281 (360)
T ss_pred -ccc--------------chHHHHHHhhcCC--EEEEEeCc
Confidence 000 0112566666665 68887654
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=51.65 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=66.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc-----c------cc---------------cccCCCeEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP-----W------SH---------------LLINHGVHC 61 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~-----~------~~---------------~~~~~~v~~ 61 (478)
.++..+|+|.| .|-+|++++..|.+.|..+++++|...-.. + .. .....+++.
T Consensus 173 kL~~~~VaIVG-~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~ 251 (393)
T PRK06153 173 KLEGQRIAIIG-LGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP 251 (393)
T ss_pred HHhhCcEEEEc-CCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence 45678999999 588999999999999987788887541100 0 00 001223555
Q ss_pred EEecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 62 v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
+...+ +++.+. .+.++|+||.|.- |..+-..+.++|.+.++ .+|.++-
T Consensus 252 ~~~~I-~~~n~~-~L~~~DiV~dcvD-----------------n~~aR~~ln~~a~~~gI-P~Id~G~ 299 (393)
T PRK06153 252 HPEYI-DEDNVD-ELDGFTFVFVCVD-----------------KGSSRKLIVDYLEALGI-PFIDVGM 299 (393)
T ss_pred EeecC-CHHHHH-HhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCC-CEEEeee
Confidence 55555 455554 5789999999874 22333447788888887 4666554
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.036 Score=54.99 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
..+++|+|.|+ |-+|..+++.|.+.|..+|++++|+.......... -+. +..+.+++.+.+.++|+||-+.+.
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g~-----~~~~~~~~~~~l~~aDvVi~at~~ 248 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-LGG-----NAVPLDELLELLNEADVVISATGA 248 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cCC-----eEEeHHHHHHHHhcCCEEEECCCC
Confidence 46789999996 99999999999987765588998875422111111 112 222345677778899999999874
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.24 Score=48.85 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=68.3
Q ss_pred EEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--cc------CCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 16 VTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--LI------NHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 16 VTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--~~------~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|.| +|.||++++..|...+. +++..+|+......... .. ..++++. + .| .+.++++|+||-+|
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~----~~~~~daDivVita 72 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-S--GD----YSDCKDADLVVITA 72 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-c--CC----HHHHCCCCEEEECC
Confidence 356 59999999999988875 34999998654221110 00 1122222 1 22 34678999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe-EEEEe
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR-LVYVS 128 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r-~V~~S 128 (478)
+.... +..+..+..+.|+.-.+.+.+...+++.+- ++.+|
T Consensus 73 g~~rk--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 73 GAPQK--PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 96322 223456788999999999999999987554 34333
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.085 Score=56.80 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=55.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
..+++|+|+|.|| |.+|.-++....+.|++ |+++|..+..+. .... -..+.+|..|.+.+.++.+++|+|.-
T Consensus 18 ~~~~~k~IgIIGg-Gqlg~mla~aA~~lG~~-Vi~ld~~~~apa---~~~A-D~~~v~~~~D~~~l~~~a~~~dvIt~ 89 (577)
T PLN02948 18 HGVSETVVGVLGG-GQLGRMLCQAASQMGIK-VKVLDPLEDCPA---SSVA-ARHVVGSFDDRAAVREFAKRCDVLTV 89 (577)
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCCCCch---hhhC-ceeeeCCCCCHHHHHHHHHHCCEEEE
Confidence 3467889999995 79999999999999999 999987654221 1111 13456899999999998888998743
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.081 Score=53.88 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+|+|.|.| .|-||+.+++.|...|.+ |++.||..... ......++++ ..+++++++++|+|+.+..
T Consensus 189 ~L~gktVGIvG-~G~IG~~vA~~l~~fG~~-V~~~dr~~~~~--~~~~~~g~~~-------~~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 189 DLEGMTVGIVG-AGRIGLAVLRRLKPFDVK-LHYTDRHRLPE--EVEQELGLTY-------HVSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred ecCCCEEEEEC-CCHHHHHHHHHHHhCCCE-EEEECCCCCch--hhHhhcCcee-------cCCHHHHhhcCCEEEEcCC
Confidence 46789999999 699999999999999998 99999865311 1111112221 2347788899999987765
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 258 l 258 (385)
T PRK07574 258 L 258 (385)
T ss_pred C
Confidence 3
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.1 Score=51.66 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|.|.| .|-||+.+++.|...|++ |++.++..... +++..+ ...++++++++++|+|+.+..
T Consensus 133 ~l~g~tvgIvG-~G~IG~~vA~~l~afG~~-V~~~~~~~~~~-------~~~~~~----~~~~~l~e~l~~aDvvv~~lP 199 (312)
T PRK15469 133 HREDFTIGILG-AGVLGSKVAQSLQTWGFP-LRCWSRSRKSW-------PGVQSF----AGREELSAFLSQTRVLINLLP 199 (312)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEeCCCCCC-------CCceee----cccccHHHHHhcCCEEEECCC
Confidence 46789999999 799999999999999998 99998754311 122211 134578899999999998875
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 200 l 200 (312)
T PRK15469 200 N 200 (312)
T ss_pred C
Confidence 3
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.066 Score=53.94 Aligned_cols=79 Identities=23% Similarity=0.172 Sum_probs=52.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc--cCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL--INHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~--~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
.+.++++.|.| .|-||+.+++.|...|.+ |++.+|+.+....... ....+.-.........+++++++++|+|+.+
T Consensus 156 ~l~gktvGIiG-~G~IG~~vA~~l~afG~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 156 TLFGKTVFILG-YGAIGIELAKRLRPFGVK-LLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHhhCCCE-EEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 46789999999 699999999999999998 9999886331100000 0001111100111345688999999999888
Q ss_pred ccC
Q 011770 86 ASY 88 (478)
Q Consensus 86 Aa~ 88 (478)
...
T Consensus 234 lPl 236 (347)
T PLN02928 234 CTL 236 (347)
T ss_pred CCC
Confidence 754
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.13 Score=51.02 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC---HHH-HHHHh-cCcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS---KID-VEKAA-RGVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d---~~~-l~~~l-~~~D~ViH 84 (478)
.+.+|||+||+|-+|..+++.+...|.+ |+++++++... .....-+.+.+ .|..+ ... +.... +++|+|++
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~-Vi~~~~s~~~~--~~~~~lGa~~v-i~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCK-VVGAAGSDEKV--AYLKKLGFDVA-FNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCE-EEEEeCCHHHH--HHHHHcCCCEE-EeccccccHHHHHHHhCCCCeEEEEE
Confidence 4679999999999999999988889998 99887654321 11112233221 22222 222 22222 26899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+.+
T Consensus 214 ~~G 216 (325)
T TIGR02825 214 NVG 216 (325)
T ss_pred CCC
Confidence 876
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.054 Score=55.81 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
..+++|+|.|+ |-+|+.++..|.+.|..++++..|+............. +.....+++.+.+.++|+||++.+.
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~-----~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN-----ASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC-----CeEecHHHHHHHhccCCEEEECcCC
Confidence 56789999995 99999999999999976588888764422111111111 2233446778889999999999874
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.036 Score=51.99 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=31.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|+|.|+||+|.+|+.++..|.+.|++ |++.+|++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~-V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNK-IIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCE-EEEEEcCHH
Confidence 47999999999999999999999998 999888654
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.063 Score=54.33 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
..++|.|.|++|.||..+++.|.+. |++ |+++|+.... .. +..+.++++|+||-|.-
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~-V~g~D~~d~~-----------------~~---~~~~~v~~aDlVilavP 60 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLE-VIGHDPADPG-----------------SL---DPATLLQRADVLIFSAP 60 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCE-EEEEcCCccc-----------------cC---CHHHHhcCCCEEEEeCC
Confidence 4579999999999999999999975 777 9999874210 11 23456788999998874
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.076 Score=51.94 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=47.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|.|.|.+|.+|..++..|+++|++ |++.+.+.. ++.++.+.+|+||-+.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~t-Vtv~~~rT~-----------------------~l~e~~~~ADIVIsavg 210 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANAT-VTIAHSRTR-----------------------DLPAVCRRADILVAAVG 210 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCE-EEEECCCCC-----------------------CHHHHHhcCCEEEEecC
Confidence 478999999999999999999999999998 999853221 14667778999998886
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
-
T Consensus 211 ~ 211 (296)
T PRK14188 211 R 211 (296)
T ss_pred C
Confidence 3
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.052 Score=53.02 Aligned_cols=79 Identities=10% Similarity=0.068 Sum_probs=51.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc-CCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI-NHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~-~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
..+++++|.|+ |-.|+.++..|.+.|..+|++++|+.......... ...... ..+...+++...+.++|+||++.+
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~--~~~~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVI--TRLEGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcc--eeccchhhhhhcccCCCEEEECCC
Confidence 45789999985 89999999999999986699998875432111100 000111 112222345556678999999987
Q ss_pred CCC
Q 011770 88 YGM 90 (478)
Q Consensus 88 ~~~ 90 (478)
.++
T Consensus 200 ~g~ 202 (282)
T TIGR01809 200 ADV 202 (282)
T ss_pred CCC
Confidence 654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.056 Score=53.50 Aligned_cols=73 Identities=30% Similarity=0.307 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC-HHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS-KIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d-~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|+||+|.+|..+++.+...|.+ |+++++++... ......+...+ .|..+ .+.+.+. .++|+|+++++
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~-v~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~-~~~d~v~~~~g 235 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGAR-VIAVTRSPEKL--KILKELGADYV-IDGSKFSEDVKKL-GGADVVIELVG 235 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCe-EEEEeCCHHHH--HHHHHcCCcEE-EecHHHHHHHHhc-cCCCEEEECCC
Confidence 3578999999999999999999999998 99887654321 11111122111 12221 1223322 37999999986
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.12 Score=49.98 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHH-cCCceEEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVR-RGAYQVRAF 42 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~~l 42 (478)
++|.|.|++|-+|+.+++.+.+ .+.+ +++.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~e-lvav 32 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQ-LVAA 32 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCE-EEEE
Confidence 5899999999999999999986 4677 6654
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.086 Score=51.12 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=48.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|+|+|.+..+|+-|+..|.++|.. |+.+.++.. ++.+.++++|+||.++|
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~at-Vtv~hs~T~-----------------------~l~~~~~~ADIvi~avG 211 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCT-VTVCHRFTK-----------------------NLRHHVRNADLLVVAVG 211 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCe-EEEEECCCC-----------------------CHHHHHhhCCEEEEcCC
Confidence 467999999999999999999999999998 999865422 36777889999999987
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 212 ~ 212 (285)
T PRK10792 212 K 212 (285)
T ss_pred C
Confidence 4
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.074 Score=54.72 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=49.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|+|+| .|.||+.++..|...|.+ |++.++++.... .....+.+.. + ++++++++|+||.+.+
T Consensus 209 ~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~-ViV~d~dp~ra~--~A~~~G~~v~-----~---l~eal~~aDVVI~aTG 276 (425)
T PRK05476 209 LIAGKVVVVAG-YGDVGKGCAQRLRGLGAR-VIVTEVDPICAL--QAAMDGFRVM-----T---MEEAAELGDIFVTATG 276 (425)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHhCCCE-EEEEcCCchhhH--HHHhcCCEec-----C---HHHHHhCCCEEEECCC
Confidence 35789999999 599999999999999998 999988765321 1112233321 2 4566779999998764
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.068 Score=52.32 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC--ccccc--ccCC--CeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS--PWSHL--LINH--GVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~--~~~~~--~~~~--~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
..+++++|.|+ |..+++++..|...|..+|++++|+... ..... .... +......++.+.+.+.+.+.++|+|
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv 200 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 200 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence 56789999996 5559999999999998769999987431 11000 0001 1111112232233355567789999
Q ss_pred EEcccCCCC
Q 011770 83 FHVASYGMS 91 (478)
Q Consensus 83 iHlAa~~~~ 91 (478)
||+...++.
T Consensus 201 INaTp~Gm~ 209 (288)
T PRK12749 201 TNGTKVGMK 209 (288)
T ss_pred EECCCCCCC
Confidence 999876654
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.028 Score=54.95 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc----cCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL----INHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~----~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
..+++|+|.|+ |..|++++..|.+.|..+|++++|+......... ..+...+.. .+++.+.++++|+||+
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~-----~~~~~~~~~~aDiVIn 198 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATA-----GSDLAAALAAADGLVH 198 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEe-----ccchHhhhCCCCEEEE
Confidence 45689999995 7799999999999998669999987543211110 011122211 1234556788999999
Q ss_pred cccCCC
Q 011770 85 VASYGM 90 (478)
Q Consensus 85 lAa~~~ 90 (478)
+...++
T Consensus 199 aTp~Gm 204 (284)
T PRK12549 199 ATPTGM 204 (284)
T ss_pred CCcCCC
Confidence 976554
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.06 Score=55.85 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
..+++|+|.|+ |-+|..+++.|...|..+|++.+|+.......... -+ ++..+.+++.+.+.++|+||.+.+.
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~-~g-----~~~~~~~~~~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEE-FG-----GEAIPLDELPEALAEADIVISSTGA 252 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-cC-----CcEeeHHHHHHHhccCCEEEECCCC
Confidence 56789999985 99999999999999985499998875422111111 11 1233445677788899999999763
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.092 Score=53.56 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=52.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcc
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVA 86 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlA 86 (478)
||+|.| +|..|..+++.+.+.|++ |+++|..+.... .... -+++.+|..|.+.+.++++ ++|.|+-..
T Consensus 1 kililG-~g~~~~~l~~aa~~~G~~-v~~~d~~~~~~~---~~~a-d~~~~~~~~d~~~l~~~~~~~~id~v~~~~ 70 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLGVE-VIAVDRYANAPA---MQVA-HRSYVINMLDGDALRAVIEREKPDYIVPEI 70 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCE-EEEEeCCCCCch---hhhC-ceEEEcCCCCHHHHHHHHHHhCCCEEEecc
Confidence 589999 599999999999999999 999987654321 1111 1456688999999988887 799998654
|
This enzyme is an alternative to PurN (TIGR00639) |
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.06 Score=53.51 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=60.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH-HHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI-DVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~-~l~~~l~~~D~ViHlAa~ 88 (478)
+++||+.| +|||..-+++.|.+++.-+|++..+.-.... ......+++.+..|+.|.+ .+++..+..|.|+-+--+
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~~-~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSLlP~ 78 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDAE-ALVKGINIKAVSLDVADEELALRKEVKPLDLVISLLPY 78 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehhhHHHHH-HHhcCCCccceEEEccchHHHHHhhhcccceeeeeccc
Confidence 57899999 7999999999999887555888776544322 2223345889999999998 899999999999988754
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.14 Score=54.00 Aligned_cols=74 Identities=22% Similarity=0.213 Sum_probs=53.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
...+++|+|.|+ |.+|..+++.|.++|++ |+++|+++..... ......+++++.++-.. ...++|.||.
T Consensus 13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~------~~~~~D~Vv~ 84 (480)
T PRK01438 13 DWQGLRVVVAGL-GVSGFAAADALLELGAR-VTVVDDGDDERHRALAAILEALGATVRLGPGPT------LPEDTDLVVT 84 (480)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc------ccCCCCEEEE
Confidence 356789999995 89999999999999998 9999876532111 12334577777665332 2357899998
Q ss_pred cccCC
Q 011770 85 VASYG 89 (478)
Q Consensus 85 lAa~~ 89 (478)
..|..
T Consensus 85 s~Gi~ 89 (480)
T PRK01438 85 SPGWR 89 (480)
T ss_pred CCCcC
Confidence 88764
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.095 Score=50.87 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=43.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEE-ecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRR--GAYQVRAF-DLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l-~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
+|++++|.|.| .|.||+.+++.|.+. +++ |.++ ++++. .........+... -..+ ++++++++|+|+-
T Consensus 3 ~m~~irIGIIG-~G~IG~~~a~~L~~~~~~~e-l~aV~dr~~~-~a~~~a~~~g~~~---~~~~---~eell~~~D~Vvi 73 (271)
T PRK13302 3 SRPELRVAIAG-LGAIGKAIAQALDRGLPGLT-LSAVAVRDPQ-RHADFIWGLRRPP---PVVP---LDQLATHADIVVE 73 (271)
T ss_pred CCCeeEEEEEC-ccHHHHHHHHHHHhcCCCeE-EEEEECCCHH-HHHHHHHhcCCCc---ccCC---HHHHhcCCCEEEE
Confidence 46678999999 699999999999873 666 7654 44332 1111111111000 0123 4445678999999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
|+.
T Consensus 74 ~tp 76 (271)
T PRK13302 74 AAP 76 (271)
T ss_pred CCC
Confidence 986
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.066 Score=53.69 Aligned_cols=75 Identities=23% Similarity=0.253 Sum_probs=49.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----ccccCCCeE-EE-----EecCCCHHHHHHHhcCcC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HLLINHGVH-CI-----QGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~~~~~~~v~-~v-----~gDl~d~~~l~~~l~~~D 80 (478)
|||-|.| +||+|-....-|.+.||+ |+++|..+..-.. ...-+++++ ++ .+-++-..+.+++++++|
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHe-Vv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHE-VVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 5799999 899999999999999999 9999987652100 000111110 00 111222345677888999
Q ss_pred EEEEcccC
Q 011770 81 CVFHVASY 88 (478)
Q Consensus 81 ~ViHlAa~ 88 (478)
++|-+.+-
T Consensus 79 v~fIavgT 86 (414)
T COG1004 79 VVFIAVGT 86 (414)
T ss_pred EEEEEcCC
Confidence 99988873
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.07 Score=52.82 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=43.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+|+|.|.| +|-+|++++..|.+.|++ |++.+|+.. +++.++++++|+||-+..
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~~-V~~~~r~~~----------------------~~~~~~~~~advvi~~vp 56 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGHR-VRVWSRRSG----------------------LSLAAVLADADVIVSAVS 56 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCE-EEEEeCCCC----------------------CCHHHHHhcCCEEEEECC
Confidence 46899998 699999999999999998 999987643 124566778999988764
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.17 Score=49.72 Aligned_cols=81 Identities=12% Similarity=0.125 Sum_probs=48.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
-||.|.||+||.|..|++.|....+-++..+ .+... .+..+ .+++++++|+||-+....
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l--~s~~~--------------~~~~~---~~~~~~~~D~vFlalp~~-- 60 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSI--APDRR--------------KDAAE---RAKLLNAADVAILCLPDD-- 60 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEE--ecccc--------------cCcCC---HhHhhcCCCEEEECCCHH--
Confidence 3799999999999999999987633224444 22211 11112 334567889998876421
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
.+..+...+.+.|+ ++|=.|+.
T Consensus 61 ----------------~s~~~~~~~~~~g~-~VIDlSad 82 (310)
T TIGR01851 61 ----------------AAREAVSLVDNPNT-CIIDASTA 82 (310)
T ss_pred ----------------HHHHHHHHHHhCCC-EEEECChH
Confidence 11234444555565 67777765
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.057 Score=52.40 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc--C-CCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI--N-HGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~--~-~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
..+++++|+|+ |-+|+.++..|.+.|++ |++++|+.......... . ..+... +. ++ ....++|+||++
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~-v~v~~R~~~~~~~la~~~~~~~~~~~~--~~---~~--~~~~~~DivIna 185 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCN-VIIANRTVSKAEELAERFQRYGEIQAF--SM---DE--LPLHRVDLIINA 185 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhhcCceEEe--ch---hh--hcccCccEEEEC
Confidence 34679999997 89999999999999987 99998875421110000 0 111211 11 11 123578999999
Q ss_pred ccCCCC
Q 011770 86 ASYGMS 91 (478)
Q Consensus 86 Aa~~~~ 91 (478)
.+.++.
T Consensus 186 tp~gm~ 191 (270)
T TIGR00507 186 TSAGMS 191 (270)
T ss_pred CCCCCC
Confidence 987543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.11 Score=45.98 Aligned_cols=69 Identities=13% Similarity=0.215 Sum_probs=45.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.+++++|+|.|| |-+|.+.++.|++.|++ |++++...... ......+++...++.+ .-++++|.||-+.
T Consensus 10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~-V~VIsp~~~~~---l~~l~~i~~~~~~~~~-----~dl~~a~lViaaT 78 (157)
T PRK06719 10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAF-VTVVSPEICKE---MKELPYITWKQKTFSN-----DDIKDAHLIYAAT 78 (157)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcCccCHH---HHhccCcEEEecccCh-----hcCCCceEEEECC
Confidence 568899999995 99999999999999998 99885322211 1112234444333322 1256778877543
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.15 Score=50.28 Aligned_cols=27 Identities=30% Similarity=0.218 Sum_probs=23.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY 37 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~ 37 (478)
+++|.|.||||.+|+.+++.|.++...
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~ 27 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFP 27 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCC
Confidence 468999999999999999999997543
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.097 Score=50.81 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=47.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
...+++|+|.|.++.+|+-|+..|.++|.. |++..... .++.+.++.+|+||-.++
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~at-Vt~~hs~t-----------------------~~l~~~~~~ADIVV~avG 210 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGAT-VTICHSKT-----------------------RDLAAHTRQADIVVAAVG 210 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEecCCC-----------------------CCHHHHhhhCCEEEEcCC
Confidence 468899999999999999999999999998 99874321 135677889999999887
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.23 Score=52.10 Aligned_cols=74 Identities=30% Similarity=0.385 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
..+++|+|.| .|-.|..+++.|.+.|++ |++.|+++...... .....++.++.++-. ++ .+.++|.||..
T Consensus 12 ~~~~~i~v~G-~G~sG~a~a~~L~~~G~~-V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~-~~----~~~~~dlVV~S 84 (458)
T PRK01710 12 IKNKKVAVVG-IGVSNIPLIKFLVKLGAK-VTAFDKKSEEELGEVSNELKELGVKLVLGENY-LD----KLDGFDVIFKT 84 (458)
T ss_pred hcCCeEEEEc-ccHHHHHHHHHHHHCCCE-EEEECCCCCccchHHHHHHHhCCCEEEeCCCC-hH----HhccCCEEEEC
Confidence 4567999999 688999999999999998 99999765422111 123346777665432 22 23678999998
Q ss_pred ccCC
Q 011770 86 ASYG 89 (478)
Q Consensus 86 Aa~~ 89 (478)
.|+.
T Consensus 85 pgi~ 88 (458)
T PRK01710 85 PSMR 88 (458)
T ss_pred CCCC
Confidence 7754
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.16 Score=55.44 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=57.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
.++|+|.| .|-+|+.+++.|.++|++ ++++|.++..- ......+...+.||.+|++.++++ ++++|.||-+-
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~~-vvvID~d~~~v--~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLLSSGVK-MTVLDHDPDHI--ETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHHhCCCC-EEEEECCHHHH--HHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 36799999 599999999999999999 99999876532 122345788999999999988763 45788888665
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.072 Score=55.04 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=30.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|+|.|.| .|++|..++..|.+.|++ |+++|+++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~-V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHE-VTGVDIDQE 34 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCe-EEEEECCHH
Confidence 3799998 799999999999999999 999998755
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.048 Score=57.41 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=47.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++++|+|+ |-+|++++..|.+.|++ |++.+|+...... .....+... .+. +++. .+.++|+||+|..
T Consensus 329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~~-V~i~~R~~~~~~~-la~~~~~~~--~~~---~~~~-~l~~~DiVInatP 399 (477)
T PRK09310 329 PLNNQHVAIVGA-GGAAKAIATTLARAGAE-LLIFNRTKAHAEA-LASRCQGKA--FPL---ESLP-ELHRIDIIINCLP 399 (477)
T ss_pred CcCCCEEEEEcC-cHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH-HHHHhccce--ech---hHhc-ccCCCCEEEEcCC
Confidence 356789999995 89999999999999997 9988876432111 101101111 122 2222 2468999999987
Q ss_pred CCC
Q 011770 88 YGM 90 (478)
Q Consensus 88 ~~~ 90 (478)
.++
T Consensus 400 ~g~ 402 (477)
T PRK09310 400 PSV 402 (477)
T ss_pred CCC
Confidence 543
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.19 Score=40.96 Aligned_cols=89 Identities=26% Similarity=0.332 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+++++|||+|| |-+|.+=++.|++.|.+ |++++... ......+++..-++ ++.++++|.||-+-.
T Consensus 4 ~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~-v~vis~~~------~~~~~~i~~~~~~~------~~~l~~~~lV~~at~ 69 (103)
T PF13241_consen 4 DLKGKRVLVVGG-GPVAARKARLLLEAGAK-VTVISPEI------EFSEGLIQLIRREF------EEDLDGADLVFAATD 69 (103)
T ss_dssp --TT-EEEEEEE-SHHHHHHHHHHCCCTBE-EEEEESSE------HHHHTSCEEEESS-------GGGCTTESEEEE-SS
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEECCch------hhhhhHHHHHhhhH------HHHHhhheEEEecCC
Confidence 367899999997 99999999999999998 99997653 01124455554443 234778898883321
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
.. .-...+.+.|++.++ +|.++.
T Consensus 70 -----d~------------~~n~~i~~~a~~~~i--~vn~~D 92 (103)
T PF13241_consen 70 -----DP------------ELNEAIYADARARGI--LVNVVD 92 (103)
T ss_dssp ------H------------HHHHHHHHHHHHTTS--EEEETT
T ss_pred -----CH------------HHHHHHHHHHhhCCE--EEEECC
Confidence 11 112357888888775 666554
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.11 Score=52.50 Aligned_cols=64 Identities=25% Similarity=0.356 Sum_probs=50.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
+|+|.|| |.+|..+++.+.+.|++ |+++|..+..+. .... -+++.+|..|.+.+.++.+.+|+|
T Consensus 1 ~igiiG~-gql~~~l~~aa~~lG~~-v~~~d~~~~~p~---~~~a-d~~~~~~~~d~~~i~~~a~~~dvi 64 (352)
T TIGR01161 1 TVGILGG-GQLGRMLALAARPLGIK-VHVLDPDANSPA---VQVA-DHVVLAPFFDPAAIRELAESCDVI 64 (352)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCE-EEEECCCCCCCh---hHhC-ceeEeCCCCCHHHHHHHHhhCCEE
Confidence 4889997 89999999999999999 999987654321 1111 134578999999999999999976
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.61 Score=44.05 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=65.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~ 88 (478)
+++|+|.|||+= ++.|+++|...+.. +++.+-..... . ...+....+.+-..+.+.+.+.++ ++|.||+..-+
T Consensus 2 ~~~ilvlGGT~D-ar~la~~L~~~~~~-~~~ss~t~~g~--~-l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHP 76 (257)
T COG2099 2 MMRILLLGGTSD-ARALAKKLAAAPVD-IILSSLTGYGA--K-LAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHP 76 (257)
T ss_pred CceEEEEeccHH-HHHHHHHhhccCcc-EEEEEcccccc--c-chhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCCh
Confidence 568999999985 78999999998854 44443332211 1 111112255677778899999886 79999996531
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
- -...+.|.+++|++.|++.+.|
T Consensus 77 ---y------------Aa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 77 ---Y------------AARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred ---H------------HHHHHHHHHHHHHHhCCcEEEE
Confidence 1 1345789999999999976544
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.04 Score=53.55 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCC-CeEEE-EecCCCHHHHHHHhcCcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH-GVHCI-QGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~-~v~~v-~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.++++++|.|| |-.+++++..|++.|..+|+++.|+.+.......... ....+ ..+..+.+... ..|.|||+-
T Consensus 124 ~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~----~~dliINaT 198 (283)
T COG0169 124 VTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLE----EADLLINAT 198 (283)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccccccccc----ccCEEEECC
Confidence 34689999995 8899999999999997669999887653211111111 01011 11222222111 689999999
Q ss_pred cCCCCchhhh---------chhhhhHhhhHH-HHHHHHHHHHcCCC
Q 011770 87 SYGMSGKEML---------QFGRVDEVNING-TCHVIEACLEFGIQ 122 (478)
Q Consensus 87 a~~~~~~~~~---------~~~~~~~vNv~g-t~nll~aa~~~~v~ 122 (478)
+.++.+.... .....++++..- ---+++.|++.|.+
T Consensus 199 p~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~ 244 (283)
T COG0169 199 PVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQGAK 244 (283)
T ss_pred CCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence 8776654210 111233444442 33588888888874
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.081 Score=55.99 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+.+++|+|.|+ |-+|..+++.|...|..+|++++|+...........+++.. ...+.+++.+++.++|+||.+.+
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i---~~~~~~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI---IYKPLDEMLACAAEADVVFTSTS 338 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce---EeecHhhHHHHHhcCCEEEEccC
Confidence 56789999997 99999999999999985599998875432111111112221 12233456778889999998765
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.27 Score=49.52 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=56.2
Q ss_pred CeEEEEcCCChhHHHHHHHHH-HcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELV-RRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~-~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
++|.|.||||.+|+.+++.|. +++.. +++.++.+.+... .....+.+...-++.+. +.+.++|+||-+++-
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~--~~~f~~~~~~v~~~~~~----~~~~~vDivffa~g~ 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQA--APSFGGTTGTLQDAFDI----DALKALDIIITCQGG 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCC--cCCCCCCcceEEcCccc----ccccCCCEEEEcCCH
Confidence 479999999999999999998 55553 2555543322211 11111222233344332 245789999999862
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEecc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTY 130 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~ 130 (478)
.-+..+...+.+.|.+ .+|=-||.
T Consensus 75 ------------------~~s~~~~p~~~~aG~~~~VIDnSSa 99 (366)
T TIGR01745 75 ------------------DYTNEIYPKLRESGWQGYWIDAASS 99 (366)
T ss_pred ------------------HHHHHHHHHHHhCCCCeEEEECChh
Confidence 1234567778888853 34444443
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.041 Score=54.74 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=30.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
||+|.|.| +|-+|+.++..|.+.|++ |++++|++.
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g~~-V~~~~r~~~ 35 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNGHD-VTLWARDPE 35 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCE-EEEEECCHH
Confidence 35899999 599999999999999998 999998643
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.1 Score=53.97 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
..+++|+|.|+ |-+|..+++.|...|..+|++.+|+........ ..-+...+ +.+++.+++.++|+||.+.+.
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la-~~~g~~~i-----~~~~l~~~l~~aDvVi~aT~s 250 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLA-KELGGEAV-----KFEDLEEYLAEADIVISSTGA 250 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHcCCeEe-----eHHHHHHHHhhCCEEEECCCC
Confidence 56789999996 999999999999999544999988754211111 11111111 335677788899999999763
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.64 Score=37.39 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=60.8
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCCc
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSG 92 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~ 92 (478)
+|||.||-----.++-+.+.+.|.+ .+...|... +-.....+...++++|+||-+..+.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~-~~~hg~~~~-----------------~~~~~~~l~~~i~~aD~VIv~t~~v--- 59 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGK-LIHHGRDGG-----------------DEKKASRLPSKIKKADLVIVFTDYV--- 59 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCE-EEEEecCCC-----------------CccchhHHHHhcCCCCEEEEEeCCc---
Confidence 5899998556666888888889998 665522211 1222345888899999999988653
Q ss_pred hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 93 KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 93 ~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
+-..+..+-+.|++.++ +++|+.+.++
T Consensus 60 ------------sH~~~~~vk~~akk~~i-p~~~~~~~~~ 86 (97)
T PF10087_consen 60 ------------SHNAMWKVKKAAKKYGI-PIIYSRSRGV 86 (97)
T ss_pred ------------ChHHHHHHHHHHHHcCC-cEEEECCCCH
Confidence 23446678899999997 7888876554
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.42 Score=50.86 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc-cc--------ccccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP-WS--------HLLINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~-~~--------~~~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
+..||+|.| .|-+|++++..|+..|..++++++-..... .. .....+++.+-..|..+.+++.+.+++.|
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCc
Confidence 456899999 688899999999999987687774332211 00 01124566666667788889999999999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r 123 (478)
+|++++--. +......+-++|.+.|..-
T Consensus 207 iVi~vsDdy---------------~~~~Lr~lN~acvkegk~~ 234 (637)
T TIGR03693 207 WVLYVSDNG---------------DIDDLHALHAFCKEEGKGF 234 (637)
T ss_pred EEEEECCCC---------------ChHHHHHHHHHHHHcCCCe
Confidence 999998421 2233556888999988543
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.14 Score=49.73 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=47.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
...+++|+|+|.+..+|+-|+..|.++|.. |+..+.... ++.+..+++|+||-.+|
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~at-Vtv~hs~T~-----------------------~l~~~~~~ADIvv~AvG 216 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNAT-VSVCHVFTD-----------------------DLKKYTLDADILVVATG 216 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCE-EEEEeccCC-----------------------CHHHHHhhCCEEEEccC
Confidence 467899999999999999999999999998 998864321 25667788999999888
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 217 ~ 217 (287)
T PRK14176 217 V 217 (287)
T ss_pred C
Confidence 4
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.24 Score=45.15 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC-HHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS-KIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d-~~~l~~~l~~~D~ViHlA 86 (478)
.+.+|+|+|.|-+.-+|.-|+..|.++|.. |+.++.+.-.... .......-.....| ...+.+.++++|+||-.+
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~At-Vti~~~~~~~~~~---~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGAR-VYSVDINGIQVFT---RGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEEecCcccccc---cccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 578999999999999999999999999998 9999754321100 00000011111122 224778889999999988
Q ss_pred cC
Q 011770 87 SY 88 (478)
Q Consensus 87 a~ 88 (478)
|.
T Consensus 135 G~ 136 (197)
T cd01079 135 PS 136 (197)
T ss_pred CC
Confidence 74
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.35 Score=49.97 Aligned_cols=107 Identities=12% Similarity=0.079 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----------------------ccccCCC--eEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----------------------HLLINHG--VHCI 62 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----------------------~~~~~~~--v~~v 62 (478)
.++..+|+|.|++| +|+.+++.|...|...++++|...-.... .....+. ++++
T Consensus 17 ~L~~s~VlliG~gg-lGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~ 95 (425)
T cd01493 17 ALESAHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAV 95 (425)
T ss_pred HHhhCeEEEEcCcH-HHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 35667899999655 99999999999999778988865321100 0011222 2444
Q ss_pred EecCCCH-HHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecccee
Q 011770 63 QGDVVSK-IDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133 (478)
Q Consensus 63 ~gDl~d~-~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~ 133 (478)
..++.+. +...+.+.+.|+||-+-. +......+.+.|+++++ .+|+++|.+.+
T Consensus 96 ~e~~~~ll~~~~~f~~~fdiVI~t~~-----------------~~~~~~~L~~~c~~~~i-PlI~~~s~G~~ 149 (425)
T cd01493 96 EESPEALLDNDPSFFSQFTVVIATNL-----------------PESTLLRLADVLWSANI-PLLYVRSYGLY 149 (425)
T ss_pred ecccchhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEecccCE
Confidence 4444331 122455677788874321 11112346788999987 89999998864
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.15 Score=52.35 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
..+++|+|.| .|-||..++..+...|.+ |+++++++... ......+++.+ + ++++++++|+||.+++
T Consensus 200 l~GktVvViG-~G~IG~~va~~ak~~Ga~-ViV~d~d~~R~--~~A~~~G~~~~-----~---~~e~v~~aDVVI~atG 266 (413)
T cd00401 200 IAGKVAVVAG-YGDVGKGCAQSLRGQGAR-VIVTEVDPICA--LQAAMEGYEVM-----T---MEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEECChhhH--HHHHhcCCEEc-----c---HHHHHcCCCEEEECCC
Confidence 5789999999 599999999999999997 99998875532 11122334332 1 2356678999999875
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.055 Score=53.02 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
++|.|.|+ |.+|+.++..|.+.|++ |++.|+++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~-V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQ-TTLVDIKQE 35 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCc-EEEEeCCHH
Confidence 58999995 99999999999999999 999998755
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.089 Score=52.60 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccC-CCeEEEEecCC---CH-HHHHHHh-cCcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLIN-HGVHCIQGDVV---SK-IDVEKAA-RGVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~-~~v~~v~gDl~---d~-~~l~~~l-~~~D~Vi 83 (478)
.+.+|+|+||+|-+|..+++.+...|.+ |+++++++... ..... -++..+ .|.. +. +.+.+.. .++|+||
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~-Vi~~~~~~~~~--~~~~~~lGa~~v-i~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCY-VVGSAGSDEKV--DLLKNKLGFDDA-FNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCHHHH--HHHHHhcCCcee-EEcCCcccHHHHHHHhCCCCcEEEE
Confidence 4679999999999999999988889998 99887664321 11111 233222 2222 11 2223222 3789999
Q ss_pred Eccc
Q 011770 84 HVAS 87 (478)
Q Consensus 84 HlAa 87 (478)
++.+
T Consensus 227 d~~g 230 (338)
T cd08295 227 DNVG 230 (338)
T ss_pred ECCC
Confidence 9876
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.16 Score=49.35 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=47.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|+|.|.+..+|.-++..|.++|.. |++++... .++.+.++++|+||-+++
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAt-Vtv~hs~t-----------------------~~l~~~~~~ADIvV~AvG 209 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGAS-VSVCHILT-----------------------KDLSFYTQNADIVCVGVG 209 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCE-EEEEeCCc-----------------------HHHHHHHHhCCEEEEecC
Confidence 467999999999999999999999999998 98874321 235678889999998887
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 210 ~ 210 (285)
T PRK14191 210 K 210 (285)
T ss_pred C
Confidence 4
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.084 Score=56.28 Aligned_cols=77 Identities=23% Similarity=0.242 Sum_probs=49.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
.+++++++|+|+ |-+|++++..|.+.|++ |++++|+........... +. +..+.+++.+. ....|+|||+.
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~-V~i~nR~~e~a~~la~~l-~~-----~~~~~~~~~~~~~~~~diiINtT 447 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGAR-VVIANRTYERAKELADAV-GG-----QALTLADLENFHPEEGMILANTT 447 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHh-CC-----ceeeHhHhhhhccccCeEEEecc
Confidence 466789999998 89999999999999996 999988643211110000 11 11122222222 23579999999
Q ss_pred cCCCCc
Q 011770 87 SYGMSG 92 (478)
Q Consensus 87 a~~~~~ 92 (478)
+.++.+
T Consensus 448 ~vGm~~ 453 (529)
T PLN02520 448 SVGMQP 453 (529)
T ss_pred cCCCCC
Confidence 876643
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.16 Score=50.55 Aligned_cols=69 Identities=23% Similarity=0.255 Sum_probs=50.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+||+.|.| .|-||+++++.|..-|.+ |++.|+..+... ....+ ..-.++++++++.+|+|+...-
T Consensus 139 el~gkTvGIiG-~G~IG~~va~~l~afgm~-v~~~d~~~~~~~---~~~~~-------~~~~~~Ld~lL~~sDiv~lh~P 206 (324)
T COG0111 139 ELAGKTVGIIG-LGRIGRAVAKRLKAFGMK-VIGYDPYSPRER---AGVDG-------VVGVDSLDELLAEADILTLHLP 206 (324)
T ss_pred cccCCEEEEEC-CCHHHHHHHHHHHhCCCe-EEEECCCCchhh---hcccc-------ceecccHHHHHhhCCEEEEcCC
Confidence 35689999999 799999999999999999 999998544211 00011 1112468889999998877664
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 207 l 207 (324)
T COG0111 207 L 207 (324)
T ss_pred C
Confidence 3
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.16 Score=52.69 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=49.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|+|.| .|-||+.+++.|...|.+ |++.++++.... .....+++.+ .++++++++|+||-+.+
T Consensus 251 ~LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~-ViV~e~dp~~a~--~A~~~G~~~~--------~leell~~ADIVI~atG 318 (476)
T PTZ00075 251 MIAGKTVVVCG-YGDVGKGCAQALRGFGAR-VVVTEIDPICAL--QAAMEGYQVV--------TLEDVVETADIFVTATG 318 (476)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEeCCchhHH--HHHhcCceec--------cHHHHHhcCCEEEECCC
Confidence 46789999999 588999999999999998 999987654221 1111233322 25667889999998754
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.24 Score=45.81 Aligned_cols=68 Identities=19% Similarity=0.117 Sum_probs=42.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
++|.+.| +|.||..+++.+.+. +.+.|.+.||+..... ..... ...++..++.+.++++|.|+-||+.
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~-~~~~~-------~~~~~~s~ide~~~~~DlvVEaAS~ 70 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDEEKAK-ELEAS-------VGRRCVSDIDELIAEVDLVVEAASP 70 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCHHHHH-HHHhh-------cCCCccccHHHHhhccceeeeeCCH
Confidence 3688998 799999999877543 3565777777655221 00011 1111224456666889999999973
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 478 | ||||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 3e-09 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 1e-08 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 5e-07 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 1e-06 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 1e-06 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-06 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-06 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-06 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-06 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 4e-06 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 7e-06 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 9e-06 | ||
| 3a1n_A | 317 | Crystal Structure Of L-Threonine Dehydrogenase From | 2e-05 | ||
| 3a9w_A | 317 | Crystal Structure Of L-Threonine Bound L-Threonine | 6e-05 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 1e-04 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 2e-04 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 2e-04 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 3e-04 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 3e-04 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 4e-04 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 4e-04 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 8e-04 |
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 1e-70
Identities = 56/360 (15%), Positives = 120/360 (33%), Gaps = 41/360 (11%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
V G G +G + G + + R +S L C +++ +E+
Sbjct: 17 AVLGATGLLGHHAARAIRAAG-HDLVLIH-RPSSQIQRL-AYLEPECRVAEMLDHAGLER 73
Query: 75 AARGVDCVFHVAS-YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133
A RG+D V A Y + + + T ACL+ + R++YV + +
Sbjct: 74 ALRGLDGVIFSAGYYPSRPRRWQEE---VASALGQTNPFYAACLQARVPRILYVGSAYAM 130
Query: 134 FGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPA 193
+ + G+E L Y + SY K ++ + P
Sbjct: 131 PRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQARNGLP--------VVIGIPG 182
Query: 194 AIYGPGEERHLP-RIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPG 252
+ G + R+++ G + + + + I L++A
Sbjct: 183 MVLGELDIGPTTGRVITAIGNGEMTHYVA---GQRNVIDAAEAGRGLLMA---------L 230
Query: 253 QKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSV 312
++GR G+ Y ++ G + + + + L P+ + A+ +
Sbjct: 231 ERGRI---GERYLLT-GHNLEMADLTRRIAELLGQPAPQP---MSMAMA------RALAT 277
Query: 313 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372
L R PL+ + + + KA++EL + + + + I +++D
Sbjct: 278 LGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDN 337
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 7e-30
Identities = 49/245 (20%), Positives = 87/245 (35%), Gaps = 44/245 (17%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVR-AFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73
LVTG G +G+ L L + + A D+ G+ I DV ++ +++
Sbjct: 3 LVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD-------TGGIKFITLDVSNRDEID 55
Query: 74 KAAR--GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
+A +D +FH+A +S K +VN+NGT +++EA + ++++V ST
Sbjct: 56 RAVEKYSIDAIFHLAGI-LSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPST-I 113
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVD-----SYGRSKSVAEQLVLKSNGRPFKKNNRKCLY 186
VFG P + +G +K AE L +
Sbjct: 114 GVFGP--------ETPKNKVPSITITRPRTMFGVTKIAAELLG----------QYYYEKF 155
Query: 187 ---TCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237
++R I E I A P+ +Y+ + +
Sbjct: 156 GLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALK 215
Query: 238 ALILA 242
AL+
Sbjct: 216 ALVDL 220
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-28
Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 37/234 (15%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
K ++ G G VGSAL E + RG ++V A +R P + N + + DV S +
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRG-FEVTAV-VR--HPEKIKIENEHLKVKKADVSSLDE 60
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
V + +G D V + G + ++ + I +I+ + G+ R + V
Sbjct: 61 VCEVCKGADAVISAFNPGWNNPDIY------DETIKVYLTIIDGVKKAGVNRFLMVGGAG 114
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL---VLKSNGRPFKKNNRKCLYTC 188
+F + L + + K++ E ++K +
Sbjct: 115 SLF-----IAPGLRLMDSG-EVPENILPGVKALGEFYLNFLMKEKEIDW----------V 158
Query: 189 AVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242
PAA PG R + + + I V++ A+I
Sbjct: 159 FFSPAADMRPG-VRTGRYRLGKDDMIVDIVGNS-------HISVEDYAAAMIDE 204
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 37/248 (14%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKID 71
LVTGG G +GS + +L+ RG +V D L T + + GV + D+ K
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARG-LEVAVLDNLATGKREN---VPKGVPFFRVDLRDKEG 57
Query: 72 VEKAARG--VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
VE+A R V H A+ + EVN+ G +++EAC ++G+++LV+ ST
Sbjct: 58 VERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFAST 117
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDS-----YGRSKSVAEQLVLKSNGRPFKKNNRKC 184
++G E +E Y SK+ E L G+ +
Sbjct: 118 GGAIYG--------EVPEGERAEETWPPRPKSPYAASKAAFEHY-LSVYGQSYG------ 162
Query: 185 LYTCAVRPAAIYGPGE----ERHLPRIVSLAKLGLVPFKIGEPSVKT------DWIYVDN 234
L ++R +YGP + E + I + L +P + D++YV +
Sbjct: 163 LKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGD 222
Query: 235 LVLALILA 242
+ A LA
Sbjct: 223 VAEAHALA 230
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-27
Identities = 54/241 (22%), Positives = 79/241 (32%), Gaps = 46/241 (19%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
LVTG G VGSA+ L ++VR D + D+
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSD---IVDLGAA--EAHEEIVACDLADAQA 56
Query: 72 VEKAARGVDCVFHVA--SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
V + D + H+ S ++L + NI G ++ EA G R+V+ S+
Sbjct: 57 VHDLVKDCDGIIHLGGVSVERPWNDIL------QANIIGAYNLYEAARNLGKPRIVFASS 110
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHV----DS-YGRSKSVAEQLVLKSNGRPFKKNNRKC 184
N G ID V DS YG SK E L F
Sbjct: 111 -NHTIGYYP--------RTTRIDTEVPRRPDSLYGLSKCFGEDL-ASLYYHKFD------ 154
Query: 185 LYTCAVRPAAIYGP-GEERHLPRIVS------LAKLGLVPFKIGEPSV----KTDWIYVD 233
+ T +R + + + R + +S L K V K+G V + D
Sbjct: 155 IETLNIRIGSCFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASANTESWWD 214
Query: 234 N 234
N
Sbjct: 215 N 215
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 4e-27
Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 27/237 (11%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKI 70
+VTGG G +GS + +L ++ D L + + +N ++ D+ +
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLSES--NEIVVIDNLSSGNEEF---VNEAARLVKADLAAD- 55
Query: 71 DVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
D++ +G + V+H+A+ + N+ T ++EA + G+ R+V+ ST
Sbjct: 56 DIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST- 114
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDS-YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
+ V+G +++ E P PI S YG SK E L ++S F +
Sbjct: 115 STVYGEAKVIPTPEDYPTHPI-----SLYGASKLACEAL-IESYCHTFD------MQAWI 162
Query: 190 VRPAAIYGP-GEERHLPRIVSLAKLGLVPFKI---GEPSVKTDWIYVDNLVLALILA 242
R A + G + + K +I GE + +IY+ + V A++
Sbjct: 163 YRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQN--KSYIYISDCVDAMLFG 217
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 63/376 (16%), Positives = 116/376 (30%), Gaps = 96/376 (25%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKI 70
K +TG G +GS + L+ RG +V D T HL + + ++G +
Sbjct: 22 KKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRR-EHLKDHPNLTFVEGSIADHA 79
Query: 71 DVEKAARGV--DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
V + + D V H A+ S K+ + N G +V++A + + R VY
Sbjct: 80 LVNQLIGDLQPDAVVHTAA---SYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQ 136
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDE-----HVDS-YGRSKSVAEQLVLKSNGRPFKKNNR 182
T + +G K P+ +S Y SKS E +
Sbjct: 137 T-ALCYGVKP--------IQQPVRLDHPRNPANSSYAISKSANEDYLE------------ 175
Query: 183 KCLY---TCAVRPAAIYGP-GEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238
R A + GP LP G + + D+++V +L A
Sbjct: 176 --YSGLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGK-KCFVTKAR--RDFVFVKDLARA 230
Query: 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPH 298
+ A +D + Y S G + E +++ +
Sbjct: 231 TVRA----VDGVG---------HGAYHFSSGTDVAIKELYDAVVEAMALPSY-------- 269
Query: 299 ALFLGKVFSFFYSVLYPWLNRWWLPQPLILPA---EVYKVGVTHYFSLLKAKDELCYVPI 355
P+P I + + + + +
Sbjct: 270 ------------------------PEPEIRELGPDDAPSI----LLDPSRTIQDFGKIEF 301
Query: 356 VSPREGMAATISYWQD 371
+E +AA ++Y+++
Sbjct: 302 TPLKETVAAAVAYFRE 317
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 48/229 (20%), Positives = 71/229 (31%), Gaps = 33/229 (14%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
K LVTG G +G + L +R DL P C+Q D+
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMA-EILRLADLSPLDPA-----GPNEECVQCDLADANA 57
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
V G D + H+ + F ++ + NI G ++ EA G R+V+ S+ N
Sbjct: 58 VNAMVAGCDGIVHLGGISVEKP----FEQILQGNIIGLYNLYEAARAHGQPRIVFASS-N 112
Query: 132 VVFGGKEIVNGNESLPYFPIDEHV-----DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLY 186
G + V YG SK E L + F
Sbjct: 113 HTIGYYP--------QTERLGPDVPARPDGLYGVSKCFGENLA-RMYFDKFG------QE 157
Query: 187 TCAVRPAAIYG-PGEERHLPRIVSLAKLG-LVPFKIGEPSVKTDWIYVD 233
T VR + P R L S L+ P + ++
Sbjct: 158 TALVRIGSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGA 206
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 52/380 (13%), Positives = 96/380 (25%), Gaps = 101/380 (26%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
VTGG G +G + + G + + D + D
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRSIGNK-----AINDYEYRVSDY-TLED 55
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVD------EVNINGTCHVIEACLEFGIQRLV 125
+ VD V H+A G N T ++ +AC E I +V
Sbjct: 56 LINQLNDVDAVVHLA--ATRG--------SQGKISEFHDNEILTQNLYDACYENNISNIV 105
Query: 126 YVSTYNVVFGGKEIVNGNESLPYFPIDE-HVDS----YGRSKSVAEQLVLKSNGRPFKKN 180
Y ST + P +E + YG SK E + + +
Sbjct: 106 YAST-ISAYS---------DETSLPWNEKELPLPDLMYGVSKLACEHIG-----NIYSR- 149
Query: 181 NRKCLY---TCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234
+R A +YG E++ + R A G K +++Y +
Sbjct: 150 ----KKGLCIKNLRFAHLYGFN-EKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKD 204
Query: 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWL 294
++I A ++ + + + G + +E +
Sbjct: 205 AAKSVIYAL---------KQEKV---SGTFNIGSGDALTNYEVANTINNAFGNKDNL--- 249
Query: 295 AVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVP 354
P ++ Y KAK+ L +
Sbjct: 250 ------------------------LVKNPNA---NEGIHS----SYMDSSKAKELLDFST 278
Query: 355 IVSPREGMAATISYWQDRKR 374
+ + +
Sbjct: 279 DYNFATAVEEIHLLMRGLDD 298
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 52/265 (19%), Positives = 91/265 (34%), Gaps = 52/265 (19%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHL-LINHG 58
+ GIEG+ +VTGG G +GS + L +G + D L+ + + +L +N
Sbjct: 36 LGTGGGSGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIA 95
Query: 59 VHCIQGDVVSKIDVEKAARGVDCVFH---VASYGMS-GKEMLQFGRVDEVNINGTCHVIE 114
+ + D + +I + V+ +FH +S GK M+ + N + ++
Sbjct: 96 DYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMM------DNNYQYSKELLH 149
Query: 115 ACLEFGIQRLVYVS---TYNVVFGGKEIVNGNESLPYFPIDEHVDS-----YGRSKSVAE 166
CLE I +Y S TY G I+ +G SK + +
Sbjct: 150 YCLEREI-PFLYASSAATY-----------GGR--TSDFIESREYEKPLNVFGYSKFLFD 195
Query: 167 QLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKI 220
+ V R R +YGP E + + G P
Sbjct: 196 EYV-----RQILPEAN--SQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF 248
Query: 221 ---GEPSVKTDWIYVDNLVLALILA 242
D++YV ++ +
Sbjct: 249 EGSENFK--RDFVYVGDVADVNLWF 271
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 58/267 (21%), Positives = 93/267 (34%), Gaps = 37/267 (13%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS 68
+ +V GG G VGS L L+ G QV D ++ ++ + V + +
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITD 89
Query: 69 KIDVEKAARGVDCVFHVASYGM---SGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRL 124
+ D VFH+A+Y S + L E N T + E F ++++
Sbjct: 90 DALLASLQDEYDYVFHLATYHGNQSSIHDPLAD---HENNTLTTLKLYERLKHFKRLKKV 146
Query: 125 VYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS---YGRSKSVAEQLVLKSNGRPFKKNN 181
VY + + K + + I ++ Y SK E + K +
Sbjct: 147 VYSAAGCSI-AEKTFDDAKAT-EETDIVSLHNNDSPYSMSKIFGEFYS-----VYYHKQH 199
Query: 182 RKCLYTCAVRPAAIYGPGEERHLPRIVSLAKL---GLVPFKI-----GEPSV------KT 227
+ L T R +YGPGE R + P I G P T
Sbjct: 200 Q--LPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVAT 257
Query: 228 -DWIYVDNLVLALILASMGLLDDIPGQ 253
D+I+V+++ LI D PG
Sbjct: 258 RDFIFVEDVANGLIAC---AADGTPGG 281
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 71/395 (17%), Positives = 125/395 (31%), Gaps = 90/395 (22%)
Query: 3 LSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD---------LRTNSPWSHL 53
L + + K +L+TG G +GS L L++ +V D L
Sbjct: 19 LRKELPAQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSE 77
Query: 54 LINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVI 113
IQGD+ + D A GVD V H A+ G + + + NI+G +++
Sbjct: 78 KQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNML 137
Query: 114 EACLEFGIQRLVYVST---YNVVFGGKEIVNGNESLPYFPIDE-HVDS----YGRSKSVA 165
A + +Q Y ++ Y G+ P P E + Y +K V
Sbjct: 138 IAARDAKVQSFTYAASSSTY-----------GDH--PGLPKVEDTIGKPLSPYAVTKYVN 184
Query: 166 EQLVLKSNGRPFKKNNRKCLY---TCAVRPAAIYGPGEERH------LPRIVSLAKLGLV 216
E F + Y T +R ++G ++ + +P+ S G
Sbjct: 185 ELYA-----DVFSR-----CYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDD 234
Query: 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE 276
+ G+ D+ Y++N V A +LA+ A Q Y ++ G + +
Sbjct: 235 VYINGDGETSRDFCYIENTVQANLLAA----------TAGLDARNQVYNIAVGGRTSLNQ 284
Query: 277 FIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVG 336
L L + + + +V
Sbjct: 285 LFFALRDGLAENGVSYHREPVYR---------------D-------FR----EGDVRH-- 316
Query: 337 VTHYFSLLKAKDELCYVPIVSPREGMAATISYWQD 371
+ KA L Y P G+A + ++
Sbjct: 317 --SLADISKAAKLLGYAPKYDVSAGVALAMPWYIM 349
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-25
Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 35/238 (14%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73
+VTGG G +GS L +LV G Y+V D L + +N D+
Sbjct: 4 VVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSSGRREF---VNPSAELHVRDLKDYSWGA 59
Query: 74 KAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133
D VFH A+ + N+ T +V+E + G++ +V+ S+ + V
Sbjct: 60 GI--KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASS-STV 116
Query: 134 FGGKEIVNGNESLPYFPIDEHVDS-YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRP 192
+G +++ E PY PI S YG +K+ E + + R F + AVR
Sbjct: 117 YGDADVIPTPEEEPYKPI-----SVYGAAKAAGEVM-CATYARLFG------VRCLAVRY 164
Query: 193 AAIYGPGE-----ERHLPRIVSLAKLGLVPFKI---GEPSVKTDWIYVDNLVLALILA 242
A + GP + + + ++ G K ++YV + V A + A
Sbjct: 165 ANVVGPRLRHGVIYDFIMK----LRRNPNVLEVLGDGT-QRK-SYLYVRDAVEATLAA 216
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 33/256 (12%)
Query: 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAY------QVRAFDLRTNSPWSHLLINHG 58
EN +G + G G VG L LV+ G+ + D+ + +
Sbjct: 8 ENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF--SGA 65
Query: 59 VHCIQGDVVSKIDVEKAAR-GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACL 117
V D+ + + EK D +FH+A+ +SG+ L F + +N++GT ++ +A
Sbjct: 66 VDARAADLSAPGEAEKLVEARPDVIFHLAAI-VSGEAELDFDKGYRINLDGTRYLFDAIR 124
Query: 118 EFGIQ-----RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKS 172
+ R+V+ S+ VFG + P+ SYG K++ E L+
Sbjct: 125 IANGKDGYKPRVVFTSSIA-VFGAPLPYPIPDEFHTTPL----TSYGTQKAICELLLSDY 179
Query: 173 NGRPFKKNNRKCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIGEPSVK 226
+ R F +R I + + I+ +G S++
Sbjct: 180 SRRGF-------FDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIR 232
Query: 227 TDWIYVDNLVLALILA 242
+ V LI
Sbjct: 233 HWHASPRSAVGFLIHG 248
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 6e-23
Identities = 73/398 (18%), Positives = 135/398 (33%), Gaps = 94/398 (23%)
Query: 2 HLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD---------LRTNSPWSH 52
+++ KT+L+TG G +GS L +L++ V D L
Sbjct: 16 EITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVS 74
Query: 53 LLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVD-EVNINGTCH 111
I+GD+ E+ +GVD V H A+ G S + NI G +
Sbjct: 75 TEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALG-SVPRSIVDPITTNATNITGFLN 133
Query: 112 VIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS----YGRSKSVAEQ 167
++ A +Q Y ++ + +G + +LP ++E++ + Y +K V E
Sbjct: 134 ILHAAKNAQVQSFTYAAS-SSTYG------DHPALPK--VEENIGNPLSPYAVTKYVNEI 184
Query: 168 LVLKSNGRPFKKNNRKCLY---TCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKI--GE 222
+ + + Y T +R ++G R P A + + G+
Sbjct: 185 YA-----QVYAR-----TYGFKTIGLRYFNVFGR---RQDPNGAYAAVIPKWTAAMLKGD 231
Query: 223 P-------SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTF 275
D+ Y+DN++ IL+++ + A Y V+ G
Sbjct: 232 DVYINGDGETSRDFCYIDNVIQMNILSAL----------AKDSAKDNIYNVAVGDRTTLN 281
Query: 276 EFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKV 335
E G + L+ L++ + +
Sbjct: 282 ELSGYIYDELNLIHHIDKLSIKYR---------------E-------FRS---------- 309
Query: 336 G-VTH-YFSLLKAKDELCYVPIVSPREGMAATISYWQD 371
G V H + KA D L Y P + REG+ ++ ++
Sbjct: 310 GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 347
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 6e-23
Identities = 74/383 (19%), Positives = 128/383 (33%), Gaps = 83/383 (21%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
E +TG G + S + L G + V A D + N + + H + V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTEDMFCDEFHLVDLRVMEN 86
Query: 70 IDVEKAARGVDCVFHVASYGMSGKEMLQFGRVD--EVNINGTCHVIEACLEFGIQRLVYV 127
K GVD VF++A+ M G +Q N + ++IEA GI+R Y
Sbjct: 87 --CLKVTEGVDHVFNLAA-DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYA 143
Query: 128 STYNVVFGGKEIVNGNESLPY----FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRK 183
S+ ++ + + +P + D++G K E+L + K+
Sbjct: 144 SS-ACIYPEFKQLETTNVSLKESDAWPAEPQ-DAFGLEKLATEELCKH-----YNKDFG- 195
Query: 184 CLYTCAVRPAAIYGP------GEERHLPRIVSLAKLGLVPFKI---GEPSVKT-DWIYVD 233
+ R IYGP G E+ A+ F++ G T + ++D
Sbjct: 196 -IECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQ---TRSFTFID 251
Query: 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSW 293
V ++ D P+ G VS +N E +L + LP
Sbjct: 252 ECVEGVLRL---TKSDFRE----PVNIGSDEMVS----MN--EMAEMVLSFEEKKLPI-- 296
Query: 294 LAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFS-LLKAKDELCY 352
+P P GV S K++L +
Sbjct: 297 --------------------------HHIPGPE---------GVRGRNSDNNLIKEKLGW 321
Query: 353 VPIVSPREGMAATISYWQDRKRK 375
P + +EG+ T + +++ K
Sbjct: 322 APNMRLKEGLRITYFWIKEQIEK 344
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 6e-23
Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 44/242 (18%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKID 71
L+TGG G +GS L + +G +++ D T L G+ I+G V
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKREV-LPPVAGLSVIEGSVTDAGL 79
Query: 72 VEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
+E+ + V H A+ + + N+ G+ +V +A + G++RL+ T
Sbjct: 80 LERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT---NVQGSINVAKAASKAGVKRLLNFQT 136
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEH-----VDSYGRSKSVAEQLVLKSNGRPFKKNNRKC 184
+G V PI SYG SK+ E L +
Sbjct: 137 AL-CYGRPATV---------PIPIDSPTAPFTSYGISKTAGEA-FLMMSD---------- 175
Query: 185 LYTCAVRPAAIYGP----GEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
+ ++R A + GP G +P K G F + D++ + + +
Sbjct: 176 VPVVSLRLANVTGPRLAIGP---IPTFYKRLKAGQKCF-CSDTV--RDFLDMSDFLAIAD 229
Query: 241 LA 242
L+
Sbjct: 230 LS 231
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 66/378 (17%), Positives = 119/378 (31%), Gaps = 97/378 (25%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKI 70
L+TGG G +G L LV G +V D LR + ++ V+
Sbjct: 8 HRILITGGAGFIGGHLARALVASG-EEVTVLDDLRV---PPMIPPEGTGKFLEKPVLE-- 61
Query: 71 DVEKAARGVDCVFHVASYGM---SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
E+ V V+H+AS+ S K+ L + N++ H++ C G+ ++V
Sbjct: 62 LEERDLSDVRLVYHLASHKSVPRSFKQPLDY----LDNVDSGRHLLALCTSVGVPKVVVG 117
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDE-HVDS----YGRSKSVAEQLVL---KSNGRPFKK 179
ST V+G P E S Y SK E + +++ P
Sbjct: 118 ST-CEVYG---------QADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAP--- 164
Query: 180 NNRKCLYTCAVRPAAIYGPG--EERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237
VR +YGPG + +PR+ + G+ + D+ Y+ ++V
Sbjct: 165 ------EVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVD 218
Query: 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVP 297
L+ + G ++ + I +L+ +
Sbjct: 219 KLVALANR-------------PLPSVVNFGSGQSLSVNDVIR-ILQATSPAAEVARKQ-- 262
Query: 298 HALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVG-VTHYF-SLLKAKDELCYVPI 355
P+P +T + ++
Sbjct: 263 -------------------------PRP----------NEITEFRADTALQTRQIGERSG 287
Query: 356 -VSPREGMAATISYWQDR 372
+ EG+ T+ +WQ R
Sbjct: 288 GIGIEEGIRLTLEWWQSR 305
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 3e-22
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 34/242 (14%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLL-INHGVHCIQGDVVSKIDV 72
+VTGG G +GS + L +G + D L+ + + +L+ +N + + D + +I
Sbjct: 3 IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMA 62
Query: 73 EKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS---T 129
+ V+ +FH + + + ++ + + N + ++ CLE I +Y S T
Sbjct: 63 GEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREI-PFLYASSAAT 119
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
Y GG+ P+ + YG SK + ++ V R
Sbjct: 120 Y----GGRTSDFIESREYEKPL----NVYGYSKFLFDEYV-----RQILPEAN--SQIVG 164
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT---------DWIYVDNLVLALI 240
R +YGP E H + S+A GE K D++YV ++ +
Sbjct: 165 FRYFNVYGPR-EGHKGSMASVAFHLNTQLNNGES-PKLFEGSENFKRDFVYVGDVADVNL 222
Query: 241 LA 242
Sbjct: 223 WF 224
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 57/267 (21%), Positives = 103/267 (38%), Gaps = 59/267 (22%)
Query: 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFD-LRTNSPWSHL---------- 53
++ +E +T L+TGG G VGS L +V D R+N+ +S+
Sbjct: 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN 64
Query: 54 LINHGVHCIQGDVVSKIDVEKAA-RGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHV 112
LI I D+ + +D+ + D +FH A+ +S ML V + N ++
Sbjct: 65 LIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAA--VSDTTMLNQELVMKTNYQAFLNL 122
Query: 113 IEACLEFGIQRLVYVS---TYNVVFGGKEIVNGNESLPYFPIDEHVDS----YGRSKSVA 165
+E +++Y S Y GN P + +S YG SK
Sbjct: 123 LEIARSKKA-KVIYASSAGVY-----------GNTKAPN--VVGKNESPENVYGFSKLCM 168
Query: 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-------LPRIVSLAKLGLVP- 217
++ V +N +R +YGP E + + ++ A
Sbjct: 169 DEFV-----LSHSNDNV----QVGLRYFNVYGPR-EFYKEKTASMVLQLALGAMAFKEVK 218
Query: 218 -FKIGEPSVKT-DWIYVDNLVLALILA 242
F+ GE + D++Y+++++ A + A
Sbjct: 219 LFEFGE---QLRDFVYIEDVIQANVKA 242
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 89.0 bits (220), Expect = 2e-19
Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 39/296 (13%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAY----QVRAFDLRTNSPWSHLLINHGVHCIQGDVV 67
L+ G G +G++L L +V RT W ++ ++ +Q D+
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHE---DNPINYVQCDIS 58
Query: 68 SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLV 125
D + + V HV + + E N +V++A + ++ +
Sbjct: 59 DPDDSQAKLSPLTDVTHVFYVTWANRS--TEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116
Query: 126 YVSTYNVVFGGKEIVN-GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKC 184
+ G E P + D Y E ++L+ + ++
Sbjct: 117 LQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEK------KEG 170
Query: 185 LYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSV----------KTDWIYVDN 234
L RP I+G + + +L + G+ +D D
Sbjct: 171 LTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADL 230
Query: 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP 290
+ I A++ P A + + VS+G F L + +
Sbjct: 231 IAEHHIWAAV-----------DPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECG 275
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-18
Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 33/184 (17%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDV-VSKIDVE 73
+ G G VG +L L YQ+ A R V + DV + ++
Sbjct: 4 FIVGSTGRVGKSLLKSLSTTD-YQIYAG-ARKVEQVPQYN---NVKAVHFDVDWTPEEMA 58
Query: 74 KAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133
K G+D + +V+ G +V++ G +++A + ++R + +ST
Sbjct: 59 KQLHGMDAIINVSGSGGKSLL--------KVDLYGAVKLMQAAEKAEVKRFILLSTIFS- 109
Query: 134 FGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPA 193
+ + Y +K A+ + K YT ++P
Sbjct: 110 --------LQPEKWIGAGFDALKDYYIAKHFADLYLTKETNLD---------YTI-IQPG 151
Query: 194 AIYG 197
A+
Sbjct: 152 ALTE 155
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 9e-18
Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 41/248 (16%)
Query: 12 KTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI 70
L+ G G +G+ L +L + G V A D+R + + + + +
Sbjct: 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLN----TDVVNSGPFEVVNALDFN 58
Query: 71 DVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
+E + ++ +A+ +S ++N+N HV+ I+++ + S
Sbjct: 59 QIEHLVEVHKITDIYLMAAL-LSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPS 117
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDS----YGRSKSVAEQLVLKSNGRPFKKNNRKC 184
+ VFG + YG SK E+ +
Sbjct: 118 S-IAVFG------PTTPKE-NTPQYTIMEPSTVYGISKQAGERW-----CEYYHN----- 159
Query: 185 LY---TCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKI-GEPSVKTDWIYVDN 234
+Y ++R + I A ++ K +Y+D+
Sbjct: 160 IYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIAD-KKYECFLSSETKMPMMYMDD 218
Query: 235 LVLALILA 242
+ A I
Sbjct: 219 AIDATINI 226
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 4e-17
Identities = 58/292 (19%), Positives = 88/292 (30%), Gaps = 79/292 (27%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQ------VRAFD----------------LRTN 47
E +T L+TG G +G L LEL+RR VRA
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELL 131
Query: 48 SPWSHLLINHGVHCIQGDV------VSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRV 101
+ L + + + GD + + + A VD + A+ V
Sbjct: 132 RHFKELAADR-LEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAA------------MV 178
Query: 102 D--------EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153
+ N+ GT +I L ++ YVST V E E I
Sbjct: 179 NAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST-ADVGAAIEPSAFTEDADIRVISP 237
Query: 154 HVDS-------YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---- 202
YG SK E L+ ++ N+ L R I
Sbjct: 238 TRTVDGGWAGGYGTSKWAGEVLLREA-------NDLCALPVAVFRCGMILADTSYAGQLN 290
Query: 203 ---HLPRIV-SLAKLGLVPFKIGEPSVKT-------DWIYVDNLVLALILAS 243
+ R+V SL G+ P EP + D + V + A+ +
Sbjct: 291 MSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLG 342
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 4e-17
Identities = 38/257 (14%), Positives = 80/257 (31%), Gaps = 60/257 (23%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
++TG G VG L +L + + +T ++E
Sbjct: 4 VITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEE---------------------ELES 42
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
A D + H+A G++ E + N++ HV++ + + +S+
Sbjct: 43 ALLKADFIVHLA--GVNRPEHDKE--FSLGNVSYLDHVLDILTRNTKKPAILLSS----- 93
Query: 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194
S+ + YG SK EQL+ + + + R
Sbjct: 94 ----------SIQATQDNP----YGESKLQGEQLLRE-----YAEEYG--NTVYIYRWPN 132
Query: 195 IYGPGEE----RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250
++G + + ++ + +V+ YVD++V + A G
Sbjct: 133 LFGKWCKPNYNSVIATFCYKIARNE-EIQVNDRNVELTLNYVDDIVAEIKRAIEGT---- 187
Query: 251 PGQKGRPIASGQPYFVS 267
P + + V+
Sbjct: 188 PTIENGVPTVPNVFKVT 204
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 6e-17
Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 48/280 (17%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
L+ G G +G L L +G ++V LR ++ + GV + DV
Sbjct: 4 SKILIAG-CGDLGLELARRLTAQG-HEVTG--LRRSAQ----PMPAGVQTLIADVTRPDT 55
Query: 72 VEKAARG-VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
+ + + + + E + + G + + A +Q + +VS+
Sbjct: 56 LASIVHLRPEILVYCVAASEYSDEHYR-----LSYVEGLRNTLSALEGAPLQHVFFVSST 110
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAV 190
V+G + +E P D G+ AE L+ + +
Sbjct: 111 G-VYGQEVEEWLDEDTPPIAKDF----SGKRMLEAEALLAA-------------YSSTIL 152
Query: 191 RPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250
R + IYGPG R + + P + + T+ I+ D+ + +
Sbjct: 153 RFSGIYGPGRLR-------MIRQAQTPEQWPARNAWTNRIHRDDGAAFIAYL----IQQR 201
Query: 251 PGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP 290
+ Y V+D P+ + + L P
Sbjct: 202 SHAVPERL-----YIVTDNQPLPVHDLLRWLADRQGIAYP 236
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 7e-17
Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 32/193 (16%)
Query: 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQG 64
EN +G LV G G V L EL +G ++ A +R L +
Sbjct: 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKG-HEPVAM-VRNEEQGPELRERGASDIVVA 72
Query: 65 DVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
++ D A +D V A G + +++ G I+ + GI+R
Sbjct: 73 NLEE--DFSHAFASIDAVVFAAGSGPHTGA----DKTILIDLWGAIKTIQEAEKRGIKRF 126
Query: 125 VYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKC 184
+ VS+ + ++ Y +K +A+ + +S
Sbjct: 127 IMVSSVGT-------------VDPDQGPMNMRHYLVAKRLADDELKRS-SLD-------- 164
Query: 185 LYTCAVRPAAIYG 197
YT VRP +
Sbjct: 165 -YTI-VRPGPLSN 175
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 1e-16
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 34/228 (14%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
+ G G GS + E RG ++V A R + + ++ +Q D+
Sbjct: 4 GIIGATGRAGSRILEEAKNRG-HEVTAIV-RNAGKITQT--HKDINILQKDIFD--LTLS 57
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
+ V E ++ H+I RL+ V +
Sbjct: 58 DLSDQNVVVDAYGIS---------PDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQ 108
Query: 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194
++ ES + + ++K + ++ + P+A
Sbjct: 109 IDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAE-----------FSWTYISPSA 157
Query: 195 IYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242
++ PGE +I + F S +I +++ +A++
Sbjct: 158 MFEPGERTGDYQIG----KDHLLFGSDGNS----FISMEDYAIAVLDE 197
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-16
Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 34/189 (17%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
+ G G G + V+ G Y+V +R +S H + GDV+ DV+K
Sbjct: 7 AIFGATGQTGLTTLAQAVQAG-YEVTVL-VRDSSRLPSEG-PRPAHVVVGDVLQAADVDK 63
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
G D V + V G +++ A G+ ++V ++ +++
Sbjct: 64 TVAGQDAVIVLLGTRNDLSP-------TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLW 116
Query: 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194
+ + + + +++ +S G Y AV P
Sbjct: 117 DPTK------------VPPRLQAVTDDHIRMHKVLRES-GLK---------YV-AVMPPH 153
Query: 195 IY-GPGEER 202
I P
Sbjct: 154 IGDQPLTGA 162
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 6e-16
Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 41/203 (20%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI 70
T LVTG G G + +L + + +R+ + GD+
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGL-VRSAQGKEKIG--GEADVFIGDITDAD 61
Query: 71 DVEKAARGVDCVFHVAS-------------YGMSGKEMLQFGRVDEVNINGTCHVIEACL 117
+ A +G+D + + S G ++V+ G + I+A
Sbjct: 62 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 121
Query: 118 EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS-YGRSKSVAEQLVLKSNGRP 176
G++ +V V + + P P+++ + K AEQ + S G P
Sbjct: 122 VAGVKHIVVVGSMGG------------TNPDHPLNKLGNGNILVWKRKAEQYLADS-GTP 168
Query: 177 FKKNNRKCLYTCAVRPAAIYGPG 199
YT +R +
Sbjct: 169 ---------YT-IIRAGGLLDKE 181
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 63/382 (16%), Positives = 133/382 (34%), Gaps = 59/382 (15%)
Query: 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV 67
++ K L+ G G +G L ++ ++V D++T+ L+ + +H +GD+
Sbjct: 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRL-GDLVKHERMHFFEGDIT 79
Query: 68 SKID-VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126
+ VE + D + + + + Q RV E++ ++ + +++G LV+
Sbjct: 80 INKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGK-HLVF 138
Query: 127 VSTYNVVFGGK---EIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRK 183
ST + V+G + +L Y PI++ Y SK + ++++ +
Sbjct: 139 PST-SEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGY--------GME 189
Query: 184 CLYTCAVRPAAIYGP----------GEERHLPRIVSLAKLGLVPFKI-GEPSVKTDWIYV 232
L RP GP G R + + + G + S K + YV
Sbjct: 190 GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRG-ENISLVDGGSQKRAFTYV 248
Query: 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKS 292
D+ + AL+ +A+G+ Y + + + + + L + P+
Sbjct: 249 DDGISALMKIIE---------NSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEY 299
Query: 293 WLAVPHALFLGKVFSFFYSVLY--PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDEL 350
+ + +Y Y NR P I EL
Sbjct: 300 ADSAKRVKLVETTSGAYYGNGYQDV-QNR----VPKI----------------ENTMQEL 338
Query: 351 CYVPIVSPREGMAATISYWQDR 372
+ P + + + ++
Sbjct: 339 GWAPQFTFDDALRQIFEAYRGH 360
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 1e-15
Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 12/154 (7%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
K +V GG G G ++ L+ G ++VR + L G +QGD ++
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVI 65
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
+E A G F V +Y S + EV + + G+ +VY
Sbjct: 66 MELALNGAYATFIVTNYWES------CSQEQEVKQ--GKLLADLARRLGLHYVVYSG--- 114
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVA 165
+ K++ G + +F V+ Y R V
Sbjct: 115 -LENIKKLTAGRLAAAHFDGKGEVEEYFRDIGVP 147
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 66/316 (20%), Positives = 115/316 (36%), Gaps = 71/316 (22%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRA--FDLRTNSPWSHLLINHG----VHCIQ 63
+ +T VTG G +GS L + L+ RG Y VRA D HLL + +
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPTNVKKVKHLLDLPKAETHLTLWK 62
Query: 64 GDVVSKIDVEKAARGVDCVFHVAS-YGMSG----KEMLQFGRVDEVNINGTCHVIEACLE 118
D+ + ++A +G VFHVA+ E++ + I G ++++C
Sbjct: 63 ADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVI------KPTIEGMLGIMKSCAA 116
Query: 119 FG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE--------------HVDSYGRSKS 163
++RLV+ S+ V + DE Y SK+
Sbjct: 117 AKTVRRLVFTSSAGTVNIQEH--------QLPVYDESCWSDMEFCRAKKMTAWMYFVSKT 168
Query: 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP----RIVSLAKLGLVPFK 219
+AEQ K + K N T + P + GP +P +S +
Sbjct: 169 LAEQAAWK-----YAKENNIDFIT--IIPTLVVGPFIMSSMPPSLITALSPITGNEAHY- 220
Query: 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIG 279
+ ++++D+L A I + P +GR I S + D +
Sbjct: 221 --SIIRQGQFVHLDDLCNAHIYL-F----ENPKAEGRYICSSHDCIILD---------LA 264
Query: 280 PLLKTL--DYDLPKSW 293
+L+ +Y++P +
Sbjct: 265 KMLREKYPEYNIPTEF 280
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-15
Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 38/245 (15%)
Query: 2 HLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLLINHGVH 60
L E+ ++ K+ + G G G L E++ +G + +V R + V+
Sbjct: 9 KLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLI-GRRKLTFDEEAYK-NVN 66
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
D D A +G D F F RVD + E G
Sbjct: 67 QEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVD---RDYVLKSAELAKAGG 123
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
+ +S+ ++S + Y + K E V + F +
Sbjct: 124 CKHFNLLSS----------KGADKSSNFL--------YLQVKGEVEAKVEELK---FDR- 161
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
RP + +E + G +P + V +V A++
Sbjct: 162 ------YSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWA----SGHSVPVVTVVRAML 211
Query: 241 LASMG 245
+
Sbjct: 212 NNVVR 216
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 64/298 (21%), Positives = 100/298 (33%), Gaps = 58/298 (19%)
Query: 4 SENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF--DLRTNSPWSHLLINHG--- 58
+ I KT V GG G V S L L+++G Y V D SHLL
Sbjct: 2 ATQHPIGKKTACVVGGTGFVASLLVKLLLQKG-YAVNTTVRDPDNQKKVSHLLELQELGD 60
Query: 59 VHCIQGDVVSKIDVEKAARGVDCVFHVAS-----YGMSGKEMLQFGRVDEVNINGTCHVI 113
+ + D+ ++ E G D VFHVA+ +M+ + I G +V+
Sbjct: 61 LKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMI------KPAIQGVVNVM 114
Query: 114 EACLEF-GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE--------------HVDSY 158
+AC ++R++ S+ V + G +DE Y
Sbjct: 115 KACTRAKSVKRVILTSSAAAVTINQLDGTG------LVVDEKNWTDIEFLTSAKPPTWGY 168
Query: 159 GRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP----RIVSLAKLG 214
SK++AE+ K F + N L T V P + G +P +SL
Sbjct: 169 PASKTLAEKAAWK-----FAEENNIDLIT--VIPTLMAGSSLTSDVPSSIGLAMSLITGN 221
Query: 215 LVPFKI----GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSD 268
S +V+++ A I + GR I V +
Sbjct: 222 EFLINGMKGMQMLSGSVSIAHVEDVCRAHIFV-A----EKESASGRYICCAANTSVPE 274
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 53/288 (18%), Positives = 95/288 (32%), Gaps = 62/288 (21%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRA---FDLRTNSPWSHLLINHG----VHCIQG 64
VTGG G +GS + L+ G Y V D S L G +H
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNA 60
Query: 65 DVVSKIDVEKAARGVDCVFHVAS-----YGMSGKEMLQFGRVDEVNINGTCHVIEACLEF 119
D+ + A G +FH AS + + + ++G +++AC+
Sbjct: 61 DLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVT------KRTVDGALGILKACVNS 114
Query: 120 G-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE--------------HVDSYGRSKSV 164
++R +Y S+ + V + +DE +Y SK++
Sbjct: 115 KTVKRFIYTSSGSAVSFNGK--------DKDVLDESDWSDVDLLRSVKPFGWNYAVSKTL 166
Query: 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP----RIVSLAKLGLVPFKI 220
AE+ VL+ F + N + + I G LP + + L
Sbjct: 167 AEKAVLE-----FGEQNG--IDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQI-- 217
Query: 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSD 268
+ ++VD++ A I + + GR S + +
Sbjct: 218 --GVTRFHMVHVDDVARAHIYL-L----ENSVPGGRYNCSPFIVPIEE 258
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 3e-15
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 12/159 (7%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKI 70
+ L+ GG G++GS +LV G V D L+T + I G GD+ K
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGHEDA---ITEGAKFYNGDLRDKA 57
Query: 71 DVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
+ ++ V H A+ + G M + + N+ G ++E EF + + ++ S
Sbjct: 58 FLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSS 117
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167
T +G ++ E P ++YG +K E+
Sbjct: 118 TAA-TYGEVDVDLITEETMTNPT----NTYGETKLAIEK 151
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 6e-15
Identities = 38/255 (14%), Positives = 70/255 (27%), Gaps = 43/255 (16%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
V G G GSA+ E RRG ++V A +R P G + E
Sbjct: 4 AVLGATGRAGSAIVAEARRRG-HEVLAV-VR--DP-QKAADRLGATVATLVKEPLVLTEA 58
Query: 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVF 134
VD V S ++++ H++ + + + ++
Sbjct: 59 DLDSVDAVVDALSVPWG-------SGRGYLHLDFATHLVSLLRNSDTLAVFILGSASLAM 111
Query: 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194
G + P + + Q + + + + P+
Sbjct: 112 PGADHP-MILDFPESAASQPWYDGALYQYYEYQFLQMNAN----------VNWIGISPSE 160
Query: 195 IYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQK 254
+ G K L+ + G+ I N+ LA++ L+
Sbjct: 161 AFPSGPATS----YVAGKDTLLVGEDGQS-----HITTGNMALAILDQ----LEH----- 202
Query: 255 GRPIASGQPYFVSDG 269
P A V D
Sbjct: 203 --PTAIRDRIVVRDA 215
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 3e-14
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 27/163 (16%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
K L+ G G + + +L + + F R + I GDV++
Sbjct: 24 KNVLILGAGGQIARHVINQLADKQTIKQTLF-ARQPAKIHKPY-PTNSQIIMGDVLNHAA 81
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
+++A +G D V+ + +D VI A ++RL++V +
Sbjct: 82 LKQAMQGQDIVYANLT----------GEDLDI----QANSVIAAMKACDVKRLIFVLSLG 127
Query: 132 VVFGGKEIVNGNESLPYFP--IDEHVDSYGRSKSVAEQLVLKS 172
+ +E F + + + A + S
Sbjct: 128 I---------YDEVPGKFVEWNNAVIGEPLKPFRRAADAIEAS 161
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 64/387 (16%), Positives = 124/387 (32%), Gaps = 82/387 (21%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKID-V 72
L+ G G +G+ L L+R Y+V D S L + H ++GD+ + +
Sbjct: 4 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI--SRFLNHPHFHFVEGDISIHSEWI 61
Query: 73 EKAARGVDCVFHVAS------YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126
E + D V + + Y RV E++ +I C+++ R+++
Sbjct: 62 EYHVKKCDVVLPLVAIATPIEY------TRNPLRVFELDFEENLRIIRYCVKYRK-RIIF 114
Query: 127 VSTYNVVFGGKEIVNGNES---LPYFPIDEHVDSYGRSKSVAEQLVL---KSNGRPFKKN 180
ST + V+G +E L P+++ Y SK + ++++ + G F
Sbjct: 115 PST-SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT-- 171
Query: 181 NRKCLYTCAVRPAAIYGP------GEERHLPRIVS---LAKLGLVPFKI-GEPSVKTDWI 230
RP GP R ++ L + P K+ K +
Sbjct: 172 --------LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFT 223
Query: 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP 290
+ + + AL ++++ G+ + G P N L +
Sbjct: 224 DIRDGIEALYR----IIEN-----AGNRCDGEIINI--GNPENEASIEE--LGEMLLASF 270
Query: 291 KSWLAVPHALFLGKVFSFFYSVLYPW-----LNRWWLPQPLILPAEVYKVGVTHYFSLLK 345
+ H S Y +R +P I
Sbjct: 271 EKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHR----KPSI----------------RN 310
Query: 346 AKDELCYVPIVSPREGMAATISYWQDR 372
A L + P + +E + T+ ++
Sbjct: 311 AHRCLDWEPKIDMQETIDETLDFFLRT 337
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 32/198 (16%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LI 55
M K LVTGG G++GS +EL+ G Y D +NS + + L
Sbjct: 1 MTAQLQSESTSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLT 59
Query: 56 NHGVHCIQGDVVSKIDVEK--AARGVDCVFHVASY---GMSGKEMLQFGRVDEVNINGTC 110
H + + D+ + +EK +D V H A G S + L++ NI GT
Sbjct: 60 KHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYH---NNILGTV 116
Query: 111 HVIEACLEFGIQRLVYVS--TYNVVFGGKEIVNGNESLPYFPIDEH-----VDSYGRSKS 163
++E ++ + + V+ S T V+G + PI E + YG +K
Sbjct: 117 VLLELMQQYNVSKFVFSSSAT---VYG-----DATRFPNMIPIPEECPLGPTNPYGHTKY 168
Query: 164 VAEQL---VLKSNGRPFK 178
E + + S+ + +K
Sbjct: 169 AIENILNDLYNSDKKSWK 186
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 50/299 (16%), Positives = 85/299 (28%), Gaps = 74/299 (24%)
Query: 4 SENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL--------- 54
S + G +V GG G+ G A L L ++ Y+V D + H L
Sbjct: 4 SHHHHHHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIA 62
Query: 55 ------------INHGVHCIQGDVVSKIDVEK--AARGVDCVFHVASY---GMSGKEMLQ 97
+ GD+ + + + D V H S + +
Sbjct: 63 SIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSR 122
Query: 98 FGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156
N+ GT +V+ A EFG + LV + T +G I + Y I +
Sbjct: 123 AVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMG-EYGTPNI---DIEEGYITITHNGR 178
Query: 157 S------------YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE---- 200
+ Y SK + K + + +YG
Sbjct: 179 TDTLPYPKQASSFYHLSKVHDSHNI-----AFTCKAWG--IRATDLNQGVVYGVKTDETE 231
Query: 201 ---------------ERHLPRIVSLAKLG--LVPFKIGEPSVKTDWIYVDNLVLALILA 242
L R A +G L + G ++ + + V + +A
Sbjct: 232 MHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQ--TRGYLDIRDTVQCVEIA 288
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 51/289 (17%), Positives = 84/289 (29%), Gaps = 52/289 (17%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF--DLRTNSPWSHLLINHGVHCIQGDVV 67
EG LVTG G V S + +L+ G Y+VR + + VV
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 68 SKIDVE----KAARGVDCVFHVAS---YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
+ + + +G V H+AS + E++ I GT + + A
Sbjct: 69 EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVV------TPAIGGTLNALRAAAATP 122
Query: 121 -IQRLVYVSTYNVVFGGKEIVNG---NES------------LPYFPIDEHVDSYGRSKSV 164
++R V S+ K V G +E LP + + Y SK+
Sbjct: 123 SVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTE 182
Query: 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP--GEERHLPRIVSLAK--LGLVPFKI 220
AE K F N+ AV P G E
Sbjct: 183 AELAAWK-----FMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPA 237
Query: 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269
++ ++ L + + P + + + G
Sbjct: 238 LALMPPQYYVSAVDIGLLHLGCLV-----------LPQIERRRVYGTAG 275
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 1e-12
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 34/178 (19%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----------LINHGV 59
+ LVTGG G++GS LEL+ G Y D N+ L V
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 60 HCIQGDVVSKIDVEK--AARGVDCVFHVASY---GMSGKEMLQFGRVDEVNINGTCHVIE 114
+ D++ + +++ V H A G S ++ L + R VN+ GT ++E
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYR---VNLTGTIQLLE 117
Query: 115 ACLEFGIQRLVYVS--TYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVAEQ 167
G++ LV+ S T V+G + LP P + YG+SK E+
Sbjct: 118 IMKAHGVKNLVFSSSAT---VYG------NPQYLPLDEAHPTGGCTNPYGKSKFFIEE 166
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 4e-12
Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 34/187 (18%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH-GVHCIQGDVVSKIDVE 73
+ G G + L L+ + + + + +I+H V I+G + +E
Sbjct: 9 TILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLE 68
Query: 74 KAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133
+A + VF A S +++A I+R++ VS +
Sbjct: 69 QAVTNAEVVFVGAMESGSDMA----------------SIVKALSRXNIRRVIGVSMAGLS 112
Query: 134 FGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPA 193
+L + D SY + + A ++ +SN L +R
Sbjct: 113 G------EFPVALEKWTFDNLPISYVQGERQARNVLRESN-----------LNYTILRLT 155
Query: 194 AIYGPGE 200
+Y E
Sbjct: 156 WLYNDPE 162
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 65/332 (19%), Positives = 109/332 (32%), Gaps = 96/332 (28%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT------NSPWSHLLINHGVHC-IQG 64
L+TGG G +GS L + +G + FD + N W L + G + G
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHW---LSSLGNFEFVHG 57
Query: 65 DVVSKIDVEK--AARGVDCVFHVA--SYGMSGKEMLQFGRVD----------EVNINGTC 110
D+ +K DV + D FH+A + E+N+ GT
Sbjct: 58 DIRNKNDVTRLITKYMPDSCFHLAGQVA------------MTTSIDNPCMDFEINVGGTL 105
Query: 111 HVIEACLEFGIQ-RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS------------ 157
+++EA ++ ++Y ST N V+G E NE+ + + +
Sbjct: 106 NLLEAVRQYNSNCNIIYSST-NKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSP 164
Query: 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVP 217
YG SK A+Q + R F L T R +++YG R G V
Sbjct: 165 YGCSKGAADQYM-LDYARIFG------LNTVVFRHSSMYGG---RQFATYDQ----GWVG 210
Query: 218 ---FKIGEPSVKT--------------DWIYVDNLVLALILASMGLLDDIPGQKGRPIAS 260
K E D ++ ++++ A
Sbjct: 211 WFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTAL---------ANVSK-IR 260
Query: 261 GQPYFVSDGFPINTF---EFIGPLLKTLDYDL 289
G + + G +N+ E L + D+
Sbjct: 261 GNAFNIG-GTIVNSLSLLELFKLLEDYCNIDM 291
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 62/208 (29%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQ-VRAF--------DLRTNSPWSHLLINHGV 59
++ +T L+TGG G G +++ + + + ++ + +
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMA------MEFNDPRM 72
Query: 60 HCIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEV----------NINGT 109
GDV + A GVD H A+ + V NI G
Sbjct: 73 RFFIGDVRDLERLNYALEGVDICIHAAA-------LKH---VPIAEYNPLECIKTNIMGA 122
Query: 110 CHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
+VI ACL+ I +++ +ST PI + YG +K +++L
Sbjct: 123 SNVINACLKNAISQVIALSTDKAA---------------NPI----NLYGATKLCSDKLF 163
Query: 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYG 197
+ +N K + + + VR YG
Sbjct: 164 VSANNF---KGSSQTQF-SVVR----YG 183
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS S L L ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEK--AARGVDCVFHVASY---GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
+ + +D V H A G S ++ L++ + N+NGT +I A ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYY---DNNVNGTLRLISAMRAANVKNF 119
Query: 125 VYVS--TYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVAEQ 167
++ S T V+G N +PY FP YG+SK + EQ
Sbjct: 120 IFSSSAT---VYG------DNPKIPYVESFPTGTPQSPYGKSKLMVEQ 158
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 3e-11
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 33/173 (19%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDV 66
T LVTGG G++GS +EL+ G Y V D NS + + + DV
Sbjct: 6 GTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHETDV 64
Query: 67 VSKIDVEK--AARGVDCVFHVASY---GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121
+ + + A + H A+ G S + +++ N++ ++ E +
Sbjct: 65 SDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYY---RNNLDSLLSLLRVMRERAV 121
Query: 122 QRLVYVS--TYNVVFGGKEIVNGNESLPYFPIDEH-----VDSYGRSKSVAEQ 167
+R+V+ S T V+G E PIDE + YG++K +AEQ
Sbjct: 122 KRIVFSSSAT---VYGVPERS---------PIDETFPLSATNPYGQTKLMAEQ 162
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 8e-11
Identities = 55/255 (21%), Positives = 87/255 (34%), Gaps = 27/255 (10%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVV 67
GK VTG G G L L L GA V+ + L + S + G+ GD+
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 67
Query: 68 SKIDVEKAARGV--DCVFHVA-------SYGMSGKEMLQFGRVDEVNINGTCHVIEACLE 118
+ + ++ R + VFH+A SY + N+ GT +++EA
Sbjct: 68 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETY-------STNVMGTVYLLEAIRH 120
Query: 119 FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFK 178
G + V T + + KE + G + Y SK AE + F
Sbjct: 121 VGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDP---YSNSKGCAELVTSSYRNSFFN 177
Query: 179 KN--NRKCLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234
+ VR + G G+ + + A P I P W +V
Sbjct: 178 PANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLE 237
Query: 235 LVLALILASMGLLDD 249
+ +L + L D
Sbjct: 238 PLSGYLLLAQKLYTD 252
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 36/186 (19%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFD---------------------LRTNSPWS 51
LV GG G++GS L+R + V D L+ +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 52 HLLINHGVHCIQGDVVSKIDVEK---AARGVDCVFHVASYGMSGKEMLQFGRVDEVNING 108
+ GDV ++ + +D V H+ ++ G+ + + + N+ G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 109 TCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS-------YGRS 161
+++A L ++++ S+ +FG G+ S PID ++ YG S
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAA-IFG--NPTMGSVSTNAEPIDI--NAKKSPESPYGES 178
Query: 162 KSVAEQ 167
K +AE+
Sbjct: 179 KLIAER 184
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 46/179 (25%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+ LVTG G +G A+ E + + R P + +++
Sbjct: 3 RRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGFRRARPKFEQV----------NLLDSNA 51
Query: 72 VEKAARGV--DCVFHVASYGMSGKEMLQFGRVD----------EVNINGTCHVIEACLEF 119
V + H A+ R D ++N++ + ++ +
Sbjct: 52 VHHIIHDFQPHVIVHCAAE----------RRPDVVENQPDAASQLNVDASGNLAKEAAAV 101
Query: 120 GIQRLVYVST-YNVVFGGKEIVNGNESLPYFPIDEH--VDSYGRSKSVAEQLVLKSNGR 175
G L+Y+S+ Y VF G + PY D ++ YG++K E+ VL++N
Sbjct: 102 GA-FLIYISSDY--VFDGT-------NPPYREEDIPAPLNLYGKTKLDGEKAVLENNLG 150
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 12/120 (10%)
Query: 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV 72
++TG GH+G+ + + + +R V Q D ++ +
Sbjct: 2 NIMLTGATGHLGTHITNQAIANHIDHFHIG-VRNVEKVPDDW-RGKVSVRQLDYFNQESM 59
Query: 73 EKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132
+A +G+D V + S + + +++ A + G+ ++++ Y
Sbjct: 60 VEAFKGMDTVVFIPSIIHPSFKRIPEVE----------NLVYAAKQSGVAHIIFIGYYAD 109
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 41/237 (17%), Positives = 73/237 (30%), Gaps = 48/237 (20%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
K L+ G G G L ++ +V A L + + G +
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAP---ARKA---LAEHPRLDNPVGPLAEL 58
Query: 70 IDVEKAARGVDCVFH-VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
+ + +D F + + F VD + V + LE G + + VS
Sbjct: 59 L--PQLDGSIDTAFCCLGTTIKEAGSEEAFRAVD---FDLPLAVGKRALEMGARHYLVVS 113
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTC 188
+ + F Y R K EQ + + + +
Sbjct: 114 A----------LGADAKSSIF--------YNRVKGELEQALQEQG---WPQ-------LT 145
Query: 189 AVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMG 245
RP+ ++GP EE L I++ ++P K I +L AL ++
Sbjct: 146 IARPSLLFGPREEFRLAEILAAPIARILPGKY-HG------IEACDLARALWRLALE 195
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 5e-09
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 31/164 (18%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-HLLINHGVHCIQGDVVSKI 70
KT V G G G++L G + VRA + L V QG +++ +
Sbjct: 6 KTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNV 64
Query: 71 D-VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVS 128
++ G F + +G E+ G+ + +A G IQ +Y S
Sbjct: 65 PLMDTLFEGAHLAFINTTSQ-AGDEIAI-GK----------DLADAAKRAGTIQHYIYSS 112
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKS 172
+ ++P + K E V +
Sbjct: 113 -----MPDHSLYGPWPAVPMW----------APKFTVENYVRQL 141
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPW--SHLLINHGVHCIQGDV 66
+ K L+TGG G VGS L +L+ G ++V D T H + + I DV
Sbjct: 26 DRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 84
Query: 67 VSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVD--EVNINGTCHVIEACLEFGIQRL 124
V + +E VD ++H+AS + + + + N GT +++ G RL
Sbjct: 85 VEPLYIE-----VDQIYHLAS--PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG-ARL 136
Query: 125 VYVST 129
+ ST
Sbjct: 137 LLAST 141
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 52/176 (29%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
L+TG G +G + +L + +V D++ D+ + + V K
Sbjct: 16 LITGANGQLGREIQKQLKGKN-VEVIPTDVQ-----------------DLDITNVLAVNK 57
Query: 75 AARGV--DCVFHVASYGMSGKEMLQFGRVDE----------VNINGTCHVIEACLEFGIQ 122
+ V + A++ VD+ +N G ++ A G
Sbjct: 58 FFNEKKPNVVINCAAHT----------AVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA- 106
Query: 123 RLVYVST-YNVVFGGKEIVNGNESLPYFPIDEH--VDSYGRSKSVAEQLVLKSNGR 175
+V +ST Y VF +G P DE +YG++K E V N +
Sbjct: 107 EIVQISTDY--VF------DGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPK 154
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 56/178 (31%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
++TG G +G L EL Y + FD + D+ + V++
Sbjct: 9 IITGANGQLGKQLQEELNPEE-YDIYPFDKK-----------------LLDITNISQVQQ 50
Query: 75 AARGV--DCVFHVASYGMSGKEMLQFGRVDE----------VNINGTCHVIEACLEFGIQ 122
+ + + H A+Y +VD+ +N G +V A G
Sbjct: 51 VVQEIRPHIIIHCAAY----------TKVDQAEKERDLAYVINAIGARNVAVASQLVGA- 99
Query: 123 RLVYVST-YNVVFGGKEIVNGNESLPYFPIDE----HVDSYGRSKSVAEQLVLKSNGR 175
+LVY+ST Y VF G+ Y ++ YG SK EQ V + + +
Sbjct: 100 KLVYISTDY--VF------QGDRPEGYDEFHNPAPINI--YGASKYAGEQFVKELHNK 147
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 5e-08
Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 47/174 (27%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
L+TG G +G L L R +V + + L D+ +E
Sbjct: 4 LITGASGQLGIELSRLLSERH--EVIKVYNSSEIQGGYKL----------DLTDFPRLED 51
Query: 75 AARGV--DCVFHVASYGMSGKEMLQFGRVD----------EVNINGTCHVIEACLEFGIQ 122
D + + A+ VD ++N H++ A
Sbjct: 52 FIIKKRPDVIINAAAMT----------DVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS- 100
Query: 123 RLVYVST-YNVVFGGKEIVNGNESLPYFPIDEH--VDSYGRSKSVAEQLVLKSN 173
+V++ST Y VF G E Y D ++ YG SK + E L+ +
Sbjct: 101 YIVHISTDY--VFDG-------EKGNYKEEDIPNPINYYGLSKLLGETFALQDD 145
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* Length = 299 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 36/178 (20%), Positives = 61/178 (34%), Gaps = 53/178 (29%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
L+ G G VG L L G + A D+ + GD + V +
Sbjct: 4 LLFGKTGQVGWELQRSLAPVG--NLIALDVHSK-------------EFCGDFSNPKGVAE 48
Query: 75 AARGV--DCVFHVASYGMSGKEMLQFGRVD----------EVNINGTCHVIEACLEFGIQ 122
R + D + + A++ VD +N + +A E G
Sbjct: 49 TVRKLRPDVIVNAAAHT----------AVDKAESEPELAQLLNATSVEAIAKAANETGA- 97
Query: 123 RLVYVST-YNVVFGGKEIVNGNESLPYFPIDE----HVDSYGRSKSVAEQLVLKSNGR 175
+V+ ST Y VF G +P+ D +V YG++K E+ + + +
Sbjct: 98 WVVHYSTDY--VF------PGTGDIPWQETDATSPLNV--YGKTKLAGEKALQDNCPK 145
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 6e-07
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--------LLINHGVHCIQ 63
L+ G G++G + + G + +R ++ S+ G + +
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLG-HPTFLL-VRESTASSNSEKAQLLESFKASGANIVH 62
Query: 64 GDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123
G + + +A + VD V V + I ++I+A E G +
Sbjct: 63 GSIDDHASLVEAVKNVDVVIST---------------VGSLQIESQVNIIKAIKEVGTVK 107
Query: 124 LVYVSTYNV 132
+ S +
Sbjct: 108 RFFPSEFGN 116
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 20/195 (10%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
L+ G G +G+ L L+R Y+V D+ +++ S L + H ++GD+ +
Sbjct: 316 TRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA-ISRFLNHPHFHFVEGDISIHSE 374
Query: 72 -VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
+E + D V + + + RV E++ +I C+++ +R+++ ST
Sbjct: 375 WIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTS 433
Query: 131 NVVFG---GKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL---KSNGRPFKKNNRKC 184
V+G K + +L P+++ Y SK + ++++ + G F
Sbjct: 434 E-VYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT------ 486
Query: 185 LYTCAVRPAAIYGPG 199
RP GP
Sbjct: 487 ----LFRPFNWMGPR 497
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 20/128 (15%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS-------PWSHLLINHGVHCIQG 64
L+ GG G++G + + G + R G I+
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLG-HPTYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEA 62
Query: 65 DVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
+ + A + VD V + G V +I ++EA E G +
Sbjct: 63 SLDDHQRLVDALKQVDVVISALA-----------GGVLSHHILEQLKLVEAIKEAGNIKR 111
Query: 125 VYVSTYNV 132
S + +
Sbjct: 112 FLPSEFGM 119
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 17/120 (14%)
Query: 15 LVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSP-WSHLLINHGVHCIQGDVVSKIDV 72
+TG G +G + L++ A Q+ A +P + L G+ Q D + +
Sbjct: 3 AITGATGQLGHYVIESLMKTVPASQIVAI---VRNPAKAQALAAQGITVRQADYGDEAAL 59
Query: 73 EKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132
A +GV+ + + S G+ Q VI A G++ + Y S +
Sbjct: 60 TSALQGVEKLLLI-SSSEVGQRAPQHRN-----------VINAAKAAGVKFIAYTSLLHA 107
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 53/280 (18%), Positives = 85/280 (30%), Gaps = 53/280 (18%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
T L G G+ L L +G +++ N + G +
Sbjct: 6 GTLLSFG-HGYTARVLSRALAPQG-WRIIG--TSRNPDQMEAIRASGAEPLLWP-----G 56
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
E + GV + + G +L A + + Y+ST
Sbjct: 57 EEPSLDGVTHLLISTAPDSGGDPVLA-----------ALGDQIAARAAQFRWVGYLSTTA 105
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVR 191
V+G + +E+ P P GR + +AEQ P R
Sbjct: 106 -VYGDHDGAWVDETTPLTPTAAR----GRWRVMAEQQWQAVPNLP----------LHVFR 150
Query: 192 PAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251
A IYGPG R +I +P I+V+++ ++ ASM
Sbjct: 151 LAGIYGPG------RGPFSKLGKGGIRRIIKPGQVFSRIHVEDIA-QVLAASM------- 196
Query: 252 GQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPK 291
+ P G Y V D P+ + I + LP
Sbjct: 197 -ARPDP---GAVYNVCDDEPVPPQDVIAYAAELQGLPLPP 232
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 13 TFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+ VTG G +G + L+++ A Q+ A +R + L + GV GD
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAI-VRNVEK-ASTLADQGVEVRHGDYNQPES 59
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
++KA GV + + SG + + +V++A + G++ + Y
Sbjct: 60 LQKAFAGVSKLLFI-----SGPHYDNTLLIVQH-----ANVVKAARDAGVKHIAYTG 106
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 21/120 (17%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
K LV GG G +G+ + + + D R N + H +
Sbjct: 21 MSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENP--------NADHSFTIKDSGE 71
Query: 70 IDVEKAAR-------GVDCVFHVASYGMSGKEML-----QFGRVDEVNINGTCHVIEACL 117
+++ VD A G + ++N+
Sbjct: 72 EEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGA 131
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 9/116 (7%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCI--QGDVV 67
E + LV GG G +GS R V + D+ N S +I Q D V
Sbjct: 6 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEASASVIVKMTDSFTEQADQV 64
Query: 68 SKIDVEKAARG-VDCVFHVASYGMSGKEML-----QFGRVDEVNINGTCHVIEACL 117
+ + VD + VA G + + +I +
Sbjct: 65 TAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLAT 120
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 7e-06
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 19 GLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG 78
G G +G + L Y V D + +L GV Q D + + KA G
Sbjct: 12 GAGKIGQMIAALLKTSSNYSVTVADHDLAA--LAVLNRMGVATKQVDAKDEAGLAKALGG 69
Query: 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121
D V A + + T + +A G
Sbjct: 70 FDAVISAAPFFL------------------TPIIAKAAKAAGA 94
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 7e-06
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 17/124 (13%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS 68
I +VTGG +G A L+ GA QV D+R + L DV
Sbjct: 7 IRDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGEDVVADL--GDRARFAAADVTD 63
Query: 69 KIDVEKAAR------GVDCVFHVASYGMSGK--------EMLQFGRVDEVNINGTCHVIE 114
+ V A + V + A G + + + F ++ ++N+ G+ +V+
Sbjct: 64 EAAVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLR 123
Query: 115 ACLE 118
E
Sbjct: 124 LAAE 127
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 21/128 (16%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL---INHGVHCIQGD 65
++ + F+VTG +G+A+ L + GA V DL P + V D
Sbjct: 5 LKSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDL--KPPAGEEPAAELGAAVRFRNAD 61
Query: 66 VVSKIDVEKAAR-------GVDCVFHVA-------SYGMSGKEML-QFGRVDEVNINGTC 110
V ++ D A V + + A G SG L F R VN+ GT
Sbjct: 62 VTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF 121
Query: 111 HVIEACLE 118
++I E
Sbjct: 122 NMIRLAAE 129
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 9/116 (7%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
+V GG G +GSA+ + G V DL N ++ G S
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQADSNILVDGNKNWTEQEQSI 60
Query: 70 IDVEKAARG---VDCVFHVASYGMSGKEML-----QFGRVDEVNINGTCHVIEACL 117
++ ++ VD VF VA G + + ++ + +
Sbjct: 61 LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLAT 116
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 39/139 (28%)
Query: 15 LVTGGLGHVGSALCLELVRRGA-----YQVRAFDLRT---N----SPWSHLLINHGVHCI 62
LVTGG G +GS +L+ +V D T N +P + + +
Sbjct: 4 LVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDA---DPRLRFV 60
Query: 63 QGDVVSKIDVEKAARGVDCVFHVA--SYGMSGKEMLQFGRVD----------EVNINGTC 110
GD+ + + RGVD + H A S+ VD E N+ GT
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESH------------VDRSIAGASVFTETNVQGTQ 108
Query: 111 HVIEACLEFGIQRLVYVST 129
+++ ++ G+ R+V+VST
Sbjct: 109 TLLQCAVDAGVGRVVHVST 127
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKID 71
L+ GG G++G+ + ++ G + F R NS + L + G ++G++
Sbjct: 15 LIFGGTGYIGNHMVKGSLKLG-HPTYVF-TRPNSSKTTLLDEFQSLGAIIVKGELDEHEK 72
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVST 129
+ + + VD V ++ QF ++ + + G +FG+ R+ +
Sbjct: 73 LVELMKKVDVVISALAFPQIL---DQFKILEAIKVAGNIKRFLPS-DFGVEEDRINALPP 128
Query: 130 YNVVFGGKEIV 140
+ + K ++
Sbjct: 129 FEALIERKRMI 139
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 22/127 (17%)
Query: 15 LVTGGLGHVGSALCLELVRRGAY---QVRAFDLRTNSPWSHLLINH----GVHCIQGDVV 67
L+ G G +G + ++ G VR N LI++ GV ++GD+
Sbjct: 6 LILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIN 65
Query: 68 SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ KA + VD V A + I +I+A E G + +
Sbjct: 66 DHETLVKAIKQVDIVICAAGR---------------LLIEDQVKIIKAIKEAGNVKKFFP 110
Query: 128 STYNVVF 134
S + +
Sbjct: 111 SEFGLDV 117
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 29/134 (21%)
Query: 12 KTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRT---NSPWSHLLINHGVHCIQGDVV 67
K +VTGG G +GS + V D T N ++ V + GD+
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 64
Query: 68 SKIDVEKAARGVDCVFHVA--SYGMSGKEMLQFGRVD----------EVNINGTCHVIEA 115
V+K A D + H A S+ D N GT ++EA
Sbjct: 65 DAELVDKLAAKADAIVHYAAESH------------NDNSLNDPSPFIHTNFIGTYTLLEA 112
Query: 116 CLEFGIQRLVYVST 129
++ I R +VST
Sbjct: 113 ARKYDI-RFHHVST 125
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 23/150 (15%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR------TNSPWSHLLINHGVHCI 62
G+T VTGG VG L +L+ +G +V D+R + V +
Sbjct: 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGV 64
Query: 63 QGDVVSKIDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCH 111
Q DV S+ + AA V + + A + + + VN++G +
Sbjct: 65 QLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVN 124
Query: 112 VIEACLEFGIQRLVYVSTYNVVFGGKEIVN 141
+ + R+V GG +VN
Sbjct: 125 GVTTFV----PRMVERVKAGEQKGGH-VVN 149
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQV---RAFDLRTNSPWSHLLINHGVHCI 62
++GK +V G G VG L GA V R D + + + V+
Sbjct: 114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD-KAQAAADSVNKRFKVNVT 172
Query: 63 QGDVVSKIDVEKAARGVDCVFHVASYG 89
+ +A +G VF + G
Sbjct: 173 AAETADDASRAEAVKGAHFVFTAGAIG 199
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 23/130 (17%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL---INHGVHCIQGD 65
++G ++TGG +G A LV +GA DL + + + D
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDL--PNSGGEAQAKKLGNNCVFAPAD 66
Query: 66 VVSKIDVEKAAR-------GVDCVFHVASYGMSGK----------EMLQFGRVDEVNING 108
V S+ DV+ A VD + A ++ K + F RV +VN+ G
Sbjct: 67 VTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMG 126
Query: 109 TCHVIEACLE 118
T +VI
Sbjct: 127 TFNVIRLVAG 136
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 8e-05
Identities = 57/424 (13%), Positives = 109/424 (25%), Gaps = 155/424 (36%)
Query: 31 LVRRGAYQVRAF---DLRTNSPWSHLLINHGVHCIQ------------------GDVVSK 69
L+ + V+ F LR N + L+ Q V +K
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 70 IDV---------EKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
+V +A + +V G+ G G+ T ++ CL +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-----SGK--------TWVALDVCLSYK 175
Query: 121 IQRLVYVSTYNVVFG----GKEIVNGNESLPYFPID----EHVDSYGRSKSVAEQLVLKS 172
+Q + + + + ++ + L + ID D K + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 173 NGRPFKKNNRKCL----------------YTCAV----RPAAIY---GPGEERHLPRIVS 209
K CL +C + R + H+ +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS--LD 292
Query: 210 LAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGL-LDDIPGQKGRPIASGQPYFVSD 268
+ L P + V +L+L + D+P + + + P +S
Sbjct: 293 HHSMTLTPDE----------------VKSLLLKYLDCRPQDLPRE----VLTTNPRRLS- 331
Query: 269 GFPINTFEFIGPLLKTLDYDLPKSWLAVPHALF--LGKVFSFFYSVLYPWLNRWWLPQPL 326
I ++ D +W H L + +VL P R
Sbjct: 332 --------IIAESIR----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR------- 372
Query: 327 ILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATIS-YWQDRK------------ 373
+++ S+ I P +S W D
Sbjct: 373 ----KMFD-----RLSVFP-PS----AHI--P----TILLSLIWFDVIKSDVMVVVNKLH 412
Query: 374 RKSL 377
+ SL
Sbjct: 413 KYSL 416
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--------LLINHGVHCIQ 63
+ ++ GG G++G + + + + R +P S + GV I+
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFS-HPTFIY-ARPLTPDSTPSSVQLREEFRSMGVTIIE 62
Query: 64 GDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123
G++ + + VD V + M +++I I A G +
Sbjct: 63 GEMEEHEKMVSVLKQVDIVISALPFPMIS---------SQIHI------INAIKAAGNIK 107
Query: 124 LVYVSTYNV 132
S +
Sbjct: 108 RFLPSDFGC 116
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 23/121 (19%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
++ LVTGG +G A L L RG +V DLR + ++GDV + D
Sbjct: 3 RSALVTGGASGLGRAAALALKARGY-RVVVLDLRREGE--------DLIYVEGDVTREED 53
Query: 72 VEKA-----ARG-VDCVFHVA-------SYGMSGKEML-QFGRVDEVNINGTCHVIEACL 117
V +A + V A G G L F RV EVN+ GT +V+
Sbjct: 54 VRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAA 113
Query: 118 E 118
Sbjct: 114 W 114
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 22/129 (17%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL---INHGVHCIQGD 65
EG + +V+GG G +G A L G V DL + L + + + +
Sbjct: 28 FEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADL--AAEKGKALADELGNRAEFVSTN 84
Query: 66 VVSKIDVEKAA-------RGVDCVFHVASYGMSGK---------EMLQFGRVDEVNINGT 109
V S+ V A R V +G++ + +M F + ++ +NGT
Sbjct: 85 VTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGT 144
Query: 110 CHVIEACLE 118
+V
Sbjct: 145 YNVARLVAA 153
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 32/120 (26%), Positives = 42/120 (35%), Gaps = 15/120 (12%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG--VHCIQGDVVS 68
+VTG +G AL + LV RG QV R + G V I D+
Sbjct: 3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMG-RRYQRLQQQELLLGNAVIGIVADLAH 60
Query: 69 KIDVEKAAR-------GVDCVFHVASYGMSG--KEML--QFGRVDEVNINGTCHVIEACL 117
DV+ A + V H A G G Q RV E N+ T V + +
Sbjct: 61 HEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTV 120
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 21/126 (16%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQV---RAFDLRTNSPWSHLLINHG--VHCIQG 64
E K ++TG +G A+ L R G R+ D R L+ G V
Sbjct: 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVD-RLEKIAHELMQEQGVEVFYHHL 59
Query: 65 DVVSKIDVEKAA-------RGVDCVFHVASYGMSGKEMLQFGRVDE------VNINGTCH 111
DV VE+ + VD V A G+ + L+ +E VN+ G
Sbjct: 60 DVSKAESVEEFSKKVLERFGDVDVVVANA--GLGYFKRLEELSEEEFHEMIEVNLLGVWR 117
Query: 112 VIEACL 117
++A L
Sbjct: 118 TLKAFL 123
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 19 GLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG 78
G G SA+ L + GA + A+D + W GV C V + A
Sbjct: 31 GFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKA-------SVAEVAGE 83
Query: 79 VDCVF 83
D +F
Sbjct: 84 CDVIF 88
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 20/129 (15%)
Query: 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQV---RAFDLRTNSPWSHLLINHG-VHC 61
++GK L+TG +G A L GA R + + + L VH
Sbjct: 2 PSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVE-KLRALGDELTAAGAKVHV 60
Query: 62 IQGDVVSKIDVEKAA-------RGVDCVFHVASYGMSGKEMLQFGRVDE------VNING 108
++ DV + V+ A G+D + + A G+ ++ + N+ G
Sbjct: 61 LELDVADRQGVDAAVASTVEALGGLDILVNNA--GIMLLGPVEDADTTDWTRMIDTNLLG 118
Query: 109 TCHVIEACL 117
++ A L
Sbjct: 119 LMYMTRAAL 127
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI 70
+LVTGG +G A+ L++ + V D++ + + I+ D+ +
Sbjct: 4 MANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQS------FSAENLKFIKADLTKQQ 57
Query: 71 DVEKAAR-----GVDCVFHVASYGMSGK--EML--QFGRVDEVNINGTCHVIEACL 117
D+ D +F A + G ++ +V ++N+ + + I+
Sbjct: 58 DITNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLE 113
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 47/145 (32%)
Query: 12 KTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRT------------NSPWSHLLINHG 58
LVTGG G +GS +++ Y++ FD T + P N+
Sbjct: 25 MNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHP------NY- 77
Query: 59 VHCIQGDVVSKIDVEK--AARGVDCVFHVA--SYGMSGKEMLQFGRVD----------EV 104
+ ++G++ + +E R V + + A S+ VD +
Sbjct: 78 -YFVKGEIQNGELLEHVIKERDVQVIVNFAAESH------------VDRSIENPIPFYDT 124
Query: 105 NINGTCHVIEACLEFGIQRLVYVST 129
N+ GT ++E ++ +LV VST
Sbjct: 125 NVIGTVTLLELVKKYPHIKLVQVST 149
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 17/121 (14%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS 68
++ K +VTG G +G + +L R R + L GV I+ D+V
Sbjct: 3 LKKKIAVVTGATGGMGIEIVKDLSRDHIVYALG---RNPEHLAALAEIEGVEPIESDIVK 59
Query: 69 KIDVEKAAR------GVDCVFHVASYGMSGKEMLQFGRVDE------VNINGTCHVIEAC 116
++ E VD + H A ++ ++ G V E +N+ +
Sbjct: 60 EVLEEGGVDKLKNLDHVDTLVHAA--AVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQL 117
Query: 117 L 117
L
Sbjct: 118 L 118
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 24/130 (18%)
Query: 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDL------RTNSPWSHLLINHG-- 58
G +G+ +VTGG +G A E RRGA V + D+ + + L G
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLS-DVDQPALEQA----VNGLRGQGFD 81
Query: 59 VHCIQGDVVSKIDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNIN 107
H + DV ++ + A GVD VF A ++G + V ++++
Sbjct: 82 AHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLW 141
Query: 108 GTCHVIEACL 117
G+ H +EA L
Sbjct: 142 GSIHAVEAFL 151
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 34/138 (24%)
Query: 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVR--------------AFDLRTNSPWSH 52
E + KT L+TG +G A LE + ++ + P
Sbjct: 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP--- 85
Query: 53 LLINHGVHCIQGDVVSKIDVEKAA-------RGVDCVFHVASYGMSGKEMLQFGRVDE-- 103
N VH Q D+ ++ + +D + + A + G + + ++
Sbjct: 86 ---NAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKAL-GSDRVGQIATEDIQ 141
Query: 104 ----VNINGTCHVIEACL 117
N+ ++ +A L
Sbjct: 142 DVFDTNVTALINITQAVL 159
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 26/129 (20%)
Query: 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQV----RAFDLRTNSPWSHLLINHGVHC 61
G K ++TG +G A+ G + R L+ L C
Sbjct: 11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKA-------LNLPNTLC 63
Query: 62 IQGDVVSKIDVEKAA-------RGVDCVFHVASYGMSGKEMLQFGRVDE------VNING 108
Q DV K + A D + + A GM + +E VN+ G
Sbjct: 64 AQVDVTDKYTFDTAITRAEKIYGPADAIVNNA--GMMLLGQIDTQEANEWQRMFDVNVLG 121
Query: 109 TCHVIEACL 117
+ ++A L
Sbjct: 122 LLNGMQAVL 130
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 22/134 (16%), Positives = 35/134 (26%), Gaps = 38/134 (28%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI----NHGVHCIQG 64
+ K + LG +G ELV+R D N L +
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTY 62
Query: 65 DVVSKI-DVEKAARGVDCVFHVASYGMSGKEMLQFGRVD------------------EVN 105
DV + + +K + + Q VD +N
Sbjct: 63 DVTVPVAESKKLLKKI---------------FDQLKTVDILINGAGILDDHQIERTIAIN 107
Query: 106 INGTCHVIEACLEF 119
G + A L+F
Sbjct: 108 FTGLVNTTTAILDF 121
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 100.0 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.98 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.97 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.96 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.96 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.96 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.96 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.95 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.94 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.94 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.94 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.94 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.93 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.93 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.93 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.93 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.93 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.93 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.92 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.92 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.92 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.92 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.92 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.92 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.92 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.92 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.92 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.92 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.92 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.92 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.91 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.91 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.91 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.91 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.91 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.91 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.91 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.91 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.91 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.91 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.91 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.91 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.91 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.91 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.91 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.91 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.9 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.9 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.9 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.9 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.9 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.9 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.9 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.9 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.9 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.9 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.9 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.9 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.9 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.9 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.9 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.9 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.9 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.9 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.9 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.9 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.9 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.9 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.9 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.9 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.9 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.89 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.89 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.89 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.89 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.89 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.89 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.89 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.89 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.89 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.89 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.89 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.89 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.89 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.89 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.89 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.89 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.89 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.89 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.89 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.89 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.89 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.89 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.89 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.89 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.89 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.89 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.88 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.88 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.88 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.88 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.88 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.88 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.88 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.88 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.88 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.88 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.88 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.88 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.88 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.88 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.88 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.88 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.88 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.88 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.88 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.88 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.88 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.88 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.88 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.88 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.88 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.87 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.87 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.87 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.87 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.87 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.87 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.87 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.87 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.87 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.87 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.87 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.87 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.87 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.87 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.87 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.87 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.87 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.87 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.87 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.87 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.87 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.87 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.87 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.87 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.87 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.87 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.87 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.87 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.87 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.86 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.86 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.86 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.86 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.86 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.86 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.86 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.86 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.86 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.86 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.86 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.86 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.86 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.86 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.86 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.86 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.86 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.85 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.85 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.85 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.85 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.85 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.85 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.85 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.85 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.85 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.85 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.85 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.84 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.84 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.84 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.83 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.83 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.83 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.83 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.83 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.83 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.83 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.82 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.82 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.81 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.81 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.81 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.81 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.81 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.81 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.81 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.8 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.8 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.8 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.8 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.79 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.78 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.78 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.78 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.77 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.77 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.77 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.77 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.77 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.76 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.76 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.76 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.76 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.75 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.75 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.75 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.75 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.69 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.66 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.64 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.64 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.62 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.55 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.48 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.44 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.42 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.41 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.36 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.35 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.34 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.29 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.24 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.21 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 99.15 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.07 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.05 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.93 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.88 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.87 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.87 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.86 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.81 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.75 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.56 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.53 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.52 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.49 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.46 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.46 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.44 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.42 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.34 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.28 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.17 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.16 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.15 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.01 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.9 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.82 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.79 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 97.79 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.73 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.71 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.58 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.57 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.53 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.51 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.49 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.47 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.45 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.44 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.42 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.39 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.35 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.32 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.32 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.32 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.28 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.24 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.22 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.22 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.2 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.16 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.15 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.12 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.11 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.05 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.04 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.02 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.02 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.98 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.97 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.95 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.95 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.84 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.82 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.8 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.8 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.79 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.79 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.77 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.76 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.76 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.75 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.75 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.74 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.72 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.71 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.7 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.69 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.69 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.68 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.68 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.66 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.63 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.63 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.61 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.6 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.59 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.57 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.57 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.55 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.55 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.51 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 96.5 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.49 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.48 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.47 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.47 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.45 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.45 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.44 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.42 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.42 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.41 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.4 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.36 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.35 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.34 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.33 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.29 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.29 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.25 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.24 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.23 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.18 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.17 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.17 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.17 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.14 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.1 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.1 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.09 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.08 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.08 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.06 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.02 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.02 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.01 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.01 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.98 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.98 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 95.97 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.97 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 95.96 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.96 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.96 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.95 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.94 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 95.93 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 95.91 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.9 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.89 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.89 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.89 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.89 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.85 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.83 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.82 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 95.81 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 95.81 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.76 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 95.73 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.71 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 95.71 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.71 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.68 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.68 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.66 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.65 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.64 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.63 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 95.61 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.6 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 95.57 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.56 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.53 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 95.52 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.52 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.5 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 95.48 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 95.47 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.46 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 95.46 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 95.44 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.43 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 95.42 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.42 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.38 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 95.38 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 95.37 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.36 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 95.32 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.31 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 95.3 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.29 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 95.28 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 95.24 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-50 Score=402.87 Aligned_cols=313 Identities=21% Similarity=0.276 Sum_probs=259.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc---cC------CCeEEEEecCCCHHHHHHHhcCc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL---IN------HGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~---~~------~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
+++|+|||||||||||++|+++|+++|++ |++++|++........ .. .+++++++|++|.+++.++++++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQV-VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 56789999999999999999999999998 9999997653211110 00 68999999999999999999999
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchH
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYG 159 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~ 159 (478)
|+|||+|+......+..++...+++|+.||.+++++|++.++++|||+||.++ |+.....+.+|+.+..|. +.|+
T Consensus 102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~v-yg~~~~~~~~E~~~~~p~----~~Y~ 176 (351)
T 3ruf_A 102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSST-YGDHPALPKVEENIGNPL----SPYA 176 (351)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGG-GTTCCCSSBCTTCCCCCC----SHHH
T ss_pred CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHh-cCCCCCCCCccCCCCCCC----ChhH
Confidence 99999999765555666778899999999999999999999999999999998 566666788999888775 8899
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
.+|..+|++++.+.. ..+++++++||+.||||++. ..++.++..+..|..+.++|++++.++|+||+
T Consensus 177 ~sK~~~E~~~~~~~~-------~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~ 249 (351)
T 3ruf_A 177 VTKYVNEIYAQVYAR-------TYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYID 249 (351)
T ss_dssp HHHHHHHHHHHHHHH-------HHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHH
T ss_pred HHHHHHHHHHHHHHH-------HhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHH
Confidence 999999999988764 46899999999999999875 35788888888999888899999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhh
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVL 313 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~ 313 (478)
|+|++++.+++. .+...|++||+++++++|+.|+++.+.+.+|.+......+..
T Consensus 250 Dva~a~~~~~~~----------~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------- 303 (351)
T 3ruf_A 250 NVIQMNILSALA----------KDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK---------------- 303 (351)
T ss_dssp HHHHHHHHHHTC----------CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----E----------------
T ss_pred HHHHHHHHHHhh----------ccccCCCEEEeCCCCcccHHHHHHHHHHHhCccccccccccc----------------
Confidence 999999999873 134578899999999999999999999999985332221110
Q ss_pred hhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 314 YPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
... ..+ . ......+|++|++++|||+|+++++++|+++++||+++..
T Consensus 304 --~~~----~~~----~----~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 350 (351)
T 3ruf_A 304 --YRE----FRS----G----DVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLK 350 (351)
T ss_dssp --EEC----CCT----T----CCSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred --ccC----CCC----C----ccceeeeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 000 000 0 0123468999999999999999999999999999987654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=383.12 Aligned_cols=295 Identities=18% Similarity=0.136 Sum_probs=250.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
+|+|||||||||||++|+++|+++|++ |++++|++. . .. ..+++++.+|++ .+++.++++++|+|||+|+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~-~---~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~~ 74 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNT-PIILTRSIG-N---KA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAATRG 74 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCC----------CCEEEECCCC-HHHHHHHTTTCSEEEECCCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCE-EEEEeCCCC-c---cc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccccCC
Confidence 579999999999999999999999998 999999833 2 11 238999999999 9999999999999999999754
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
.. ++...+++|+.+|.+++++|++.+++|+||+||.++ |+.....+.+|+.|..|. ++|+.+|.++|++++
T Consensus 75 ~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~v-yg~~~~~~~~E~~~~~p~----~~Y~~sK~~~E~~~~ 145 (311)
T 3m2p_A 75 SQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISA-YSDETSLPWNEKELPLPD----LMYGVSKLACEHIGN 145 (311)
T ss_dssp SS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG-CCCGGGCSBCTTSCCCCS----SHHHHHHHHHHHHHH
T ss_pred CC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHH-hCCCCCCCCCCCCCCCCC----chhHHHHHHHHHHHH
Confidence 33 567788999999999999999999999999999988 666666788999888775 889999999999999
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLD 248 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~ 248 (478)
.+.. ..+++++++||+.+|||++. ..++.++..+..|..+.++|++++.++|+|++|+|++++.+++.
T Consensus 146 ~~~~-------~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~--- 215 (311)
T 3m2p_A 146 IYSR-------KKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQ--- 215 (311)
T ss_dssp HHHH-------HSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTC---
T ss_pred HHHH-------HcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhc---
Confidence 8864 47899999999999999987 57888999999999888889999999999999999999999873
Q ss_pred CCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCc
Q 011770 249 DIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLIL 328 (478)
Q Consensus 249 ~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~ 328 (478)
+. .+++||+++++++|+.|+++.+.+.+|.+.+....|.+ .+
T Consensus 216 --------~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------------------------~~--- 257 (311)
T 3m2p_A 216 --------EK-VSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPN--------------------------AN--- 257 (311)
T ss_dssp --------TT-CCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSS--------------------------BC---
T ss_pred --------CC-CCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCC--------------------------CC---
Confidence 22 68899999999999999999999999987665443321 00
Q ss_pred HHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 329 PAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 329 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
.......+|++|++++|||+|+++++++++++++|++++++
T Consensus 258 -----~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 298 (311)
T 3m2p_A 258 -----EGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLMRGLDD 298 (311)
T ss_dssp -----CSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC---
T ss_pred -----CCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHHHhccc
Confidence 01123468999999999999999999999999999987665
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=391.99 Aligned_cols=308 Identities=19% Similarity=0.195 Sum_probs=249.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhcC--c
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAARG--V 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~~--~ 79 (478)
.+++|+|||||||||||++|+++|+++| ++ |++++|........ ....++++++.+|++|.+++.+++++ +
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~-v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 99 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYK-IINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDV 99 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHCTTEE-EEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTC
T ss_pred ccCCCeEEEECCccHHHHHHHHHHHhhCCCcE-EEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCC
Confidence 4567899999999999999999999999 56 88888765322111 11235899999999999999999987 9
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchH
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYG 159 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~ 159 (478)
|+|||+|+......+..++...+++|+.||.+++++|++.+++|+||+||.+||.......+.+|+.|..|. ++|+
T Consensus 100 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~----~~Y~ 175 (346)
T 4egb_A 100 QVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPN----SPYS 175 (346)
T ss_dssp CEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTSCCCCC----SHHH
T ss_pred CEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCCCCCCC----ChhH
Confidence 999999997655555567788999999999999999999999999999999995444356678999888775 8899
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
.+|..+|++++.+.. ..+++++++||+.||||++. ..++.++..+..|..+.++|++++.++|+|++|+|+
T Consensus 176 ~sK~~~E~~~~~~~~-------~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 248 (346)
T 4egb_A 176 SSKASADMIALAYYK-------TYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCS 248 (346)
T ss_dssp HHHHHHHHHHHHHHH-------HHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHH
Confidence 999999999998864 46899999999999999874 467888899999998888899999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCccc-CChHHHHHHHHHHHHHHHhhhhc
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSW-LAVPHALFLGKVFSFFYSVLYPW 316 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~-lp~~~~~~~a~~~~~~~~~~~~~ 316 (478)
+++.+++. ...|++||+++++++++.|+++.+.+.+|.+.+.+. .+
T Consensus 249 a~~~~~~~------------~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~--------------------- 295 (346)
T 4egb_A 249 AIDVVLHK------------GRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVT--------------------- 295 (346)
T ss_dssp HHHHHHHH------------CCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEEC---------------------
T ss_pred HHHHHHhc------------CCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccC---------------------
Confidence 99999874 236889999999999999999999999998754221 11
Q ss_pred cccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 317 LNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 317 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
..+. ......+|++|++++|||+|+++++++|+++++||+++..
T Consensus 296 ------~~~~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 339 (346)
T 4egb_A 296 ------DRLG--------HDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQWYEKNEE 339 (346)
T ss_dssp ------C--C--------CCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHH
T ss_pred ------CCCC--------CcceeeccHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 0000 0112357999999999999999999999999999998653
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=393.03 Aligned_cols=327 Identities=17% Similarity=0.188 Sum_probs=254.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCC-CHHHHHHHhcCcCEEE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV-SKIDVEKAARGVDCVF 83 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~-d~~~l~~~l~~~D~Vi 83 (478)
+..|+||+|||||||||||++|+++|+++ |++ |++++|++.... ......+++++.+|++ |.+.+.++++++|+||
T Consensus 19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~-~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vi 96 (372)
T 3slg_A 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWE-VFGMDMQTDRLG-DLVKHERMHFFEGDITINKEWVEYHVKKCDVIL 96 (372)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHHSSCE-EEEEESCCTTTG-GGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred CcccCCCEEEEECCCChHHHHHHHHHHhCCCCE-EEEEeCChhhhh-hhccCCCeEEEeCccCCCHHHHHHHhccCCEEE
Confidence 34577899999999999999999999998 998 999998765321 2233478999999999 9999999999999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCC---CCCCccCCchHh
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGR 160 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~---~p~~~~~~~Y~~ 160 (478)
|||+.........++...+++|+.||.+++++|++.+ +|+||+||.+| |+.....+.+|+.+. .|...+.++|+.
T Consensus 97 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~v-yg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~ 174 (372)
T 3slg_A 97 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEV-YGMCADEQFDPDASALTYGPINKPRWIYAC 174 (372)
T ss_dssp ECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGG-GBSCCCSSBCTTTCCEEECCTTCTTHHHHH
T ss_pred EcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHH-hCCCCCCCCCccccccccCCCCCCCCcHHH
Confidence 9999866555556778889999999999999999999 99999999998 555555566666543 233334578999
Q ss_pred hHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC----------cHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 161 SKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER----------HLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 161 sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~----------~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
||.++|++++.+.. . +++++++||++||||++.. .++.++..+..|..+.++|++++.++|+
T Consensus 175 sK~~~E~~~~~~~~-------~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 246 (372)
T 3slg_A 175 SKQLMDRVIWGYGM-------E-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFT 246 (372)
T ss_dssp HHHHHHHHHHHHHT-------T-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECE
T ss_pred HHHHHHHHHHHHHH-------C-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEE
Confidence 99999999998874 4 8999999999999998643 6778888888998888889999999999
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecC-CCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHH
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSD-GFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~-g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~ 309 (478)
|++|+|++++.+++.. .....|++||+++ ++++|+.|+++.+.+.+|.+.+....|...
T Consensus 247 ~v~Dva~a~~~~~~~~---------~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----------- 306 (372)
T 3slg_A 247 YVDDGISALMKIIENS---------NGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRV----------- 306 (372)
T ss_dssp EHHHHHHHHHHHHHCG---------GGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTC-----------
T ss_pred EHHHHHHHHHHHHhcc---------cCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccc-----------
Confidence 9999999999999831 1115689999999 589999999999999999875543322100
Q ss_pred HHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 310 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..... ....... ..+.......+|++|++++|||+|+++++++|+++++||+++.
T Consensus 307 ----~~~~~---~~~~~~~--~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 361 (372)
T 3slg_A 307 ----KLVET---TSGAYYG--NGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHV 361 (372)
T ss_dssp ----CEEEC------------------CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCH
T ss_pred ----eeeec---ccccccc--CCccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00000 0000000 0001122346799999999999999999999999999998764
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-48 Score=380.66 Aligned_cols=310 Identities=20% Similarity=0.197 Sum_probs=249.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
|+|||||||||||++|+++|+++|++ |++++|.+... ......+++++.+|++|.+ +.+++++ |+|||+|+....
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~--~~~~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~~~~~ 75 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYE-VVVVDNLSSGR--REFVNPSAELHVRDLKDYS-WGAGIKG-DVVFHFAANPEV 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSCC--GGGSCTTSEEECCCTTSTT-TTTTCCC-SEEEECCSSCSS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCE-EEEEeCCCCCc--hhhcCCCceEEECccccHH-HHhhcCC-CEEEECCCCCCc
Confidence 58999999999999999999999998 99999876543 2223567999999999998 8888888 999999997655
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~ 171 (478)
..+..++...+++|+.||.+++++|++.+++++||+||.++ |+.....+.+|+.|..|. ++|+.||..+|++++.
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~v-yg~~~~~~~~e~~~~~p~----~~Y~~sK~~~e~~~~~ 150 (312)
T 3ko8_A 76 RLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV-YGDADVIPTPEEEPYKPI----SVYGAAKAAGEVMCAT 150 (312)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGG-GCSCSSSSBCTTSCCCCC----SHHHHHHHHHHHHHHH
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH-hCCCCCCCCCCCCCCCCC----ChHHHHHHHHHHHHHH
Confidence 55666778889999999999999999999999999999998 566666788898887775 7899999999999988
Q ss_pred HcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcC-CCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLG-LVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 172 ~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g-~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
+.. ..+++++++||++||||++.. .++.++..+..+ ..+.++|++++.++|+|++|+|++++.+++....
T Consensus 151 ~~~-------~~g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~- 222 (312)
T 3ko8_A 151 YAR-------LFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEE- 222 (312)
T ss_dssp HHH-------HHCCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHH-
T ss_pred HHH-------HhCCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccc-
Confidence 764 468999999999999998654 566677766666 4455789999999999999999999999873111
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
+...+++||+++++++++.|+++.+.+.+|.+.+...+|..... . ..+
T Consensus 223 -------~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~------------------~---~~~---- 270 (312)
T 3ko8_A 223 -------MDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDG------------------R---GWP---- 270 (312)
T ss_dssp -------SCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC-----------------------------------
T ss_pred -------cCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccc------------------c---CCC----
Confidence 23467899999999999999999999999987655544432100 0 000
Q ss_pred HHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.......+|++|++++|||+|+++++++|+++++|+++++++
T Consensus 271 ----~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~g 312 (312)
T 3ko8_A 271 ----GDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKELWG 312 (312)
T ss_dssp ----CCCSEECBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHHHC-
T ss_pred ----CCccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhcC
Confidence 001234689999999999999999999999999999988753
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=384.96 Aligned_cols=298 Identities=20% Similarity=0.270 Sum_probs=250.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
++..++|+|||||||||||++|+++|+++|++ |++++|+++. .+++++.+|++|.+++.++++++|+|||+
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~--------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 84 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRT-VRGFDLRPSG--------TGGEEVVGSLEDGQALSDAIMGVSAVLHL 84 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTTCC-EEEEESSCCS--------SCCSEEESCTTCHHHHHHHHTTCSEEEEC
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCCCE-EEEEeCCCCC--------CCccEEecCcCCHHHHHHHHhCCCEEEEC
Confidence 34567789999999999999999999999999 9999988652 57889999999999999999999999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCC--ccccCCCCCCCCCCCCccCCchHhhHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGG--KEIVNGNESLPYFPIDEHVDSYGRSKS 163 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~--~~~~~~~E~~p~~p~~~~~~~Y~~sK~ 163 (478)
|+....... +....+++|+.||.+++++|++.++++|||+||.+| |+. ....+.+|+.+..|. +.|+.||.
T Consensus 85 A~~~~~~~~--~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~v-yg~~~~~~~~~~E~~~~~~~----~~Y~~sK~ 157 (347)
T 4id9_A 85 GAFMSWAPA--DRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEV-YPENRPEFLPVTEDHPLCPN----SPYGLTKL 157 (347)
T ss_dssp CCCCCSSGG--GHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGG-TTTTSCSSSSBCTTSCCCCC----SHHHHHHH
T ss_pred CcccCcchh--hHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHH-hCCCCCCCCCcCCCCCCCCC----ChHHHHHH
Confidence 997544332 337889999999999999999999999999999998 554 455678898887775 88999999
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCcee-------------CCCC-------------CCcHHHHHHHHHcCCCC
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIY-------------GPGE-------------ERHLPRIVSLAKLGLVP 217 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vy-------------Gp~~-------------~~~~~~~i~~~~~g~~~ 217 (478)
++|++++.+.. ..+++++++||+.|| ||++ ...++.++..+..|..+
T Consensus 158 ~~E~~~~~~~~-------~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (347)
T 4id9_A 158 LGEELVRFHQR-------SGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPS 230 (347)
T ss_dssp HHHHHHHHHHH-------HSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHHH-------hcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCe
Confidence 99999998764 468999999999999 8873 34667788888889888
Q ss_pred eeeCCCCccccc----eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCccc
Q 011770 218 FKIGEPSVKTDW----IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSW 293 (478)
Q Consensus 218 ~~~g~g~~~~~~----v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~ 293 (478)
.++|++++.++| +|++|+|++++.+++. +...|++|||++++++++.|+++.+.+.+|.+.+...
T Consensus 231 ~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~-----------~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~ 299 (347)
T 4id9_A 231 HILARNENGRPFRMHITDTRDMVAGILLALDH-----------PEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVD 299 (347)
T ss_dssp EEEEECTTCCBCEECEEEHHHHHHHHHHHHHC-----------GGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEE
T ss_pred EEeCCCCcccCCccCcEeHHHHHHHHHHHhcC-----------cccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceee
Confidence 889999999999 9999999999999983 2355889999999999999999999999998765443
Q ss_pred CChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 294 LAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 294 lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
+| ..+. ...+|++|++++|||+|+++++++|+++++||+++.
T Consensus 300 ~p---------------------------~~~~-----------~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 341 (347)
T 4id9_A 300 FP---------------------------GDGV-----------YYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRL 341 (347)
T ss_dssp CS---------------------------SCCC-----------BCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred CC---------------------------Cccc-----------ccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence 33 1111 346899999999999999999999999999999876
Q ss_pred CC
Q 011770 374 RK 375 (478)
Q Consensus 374 ~~ 375 (478)
..
T Consensus 342 ~~ 343 (347)
T 4id9_A 342 AK 343 (347)
T ss_dssp C-
T ss_pred hc
Confidence 54
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=378.98 Aligned_cols=309 Identities=19% Similarity=0.207 Sum_probs=250.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhc--CcCEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAAR--GVDCV 82 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~--~~D~V 82 (478)
++|+|||||||||||++|+++|+++|++ |++++|+........ ....+++++.+|++|.+++.++++ ++|+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYD-VVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA 82 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCc-EEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence 4579999999999999999999999999 999998765321111 114578999999999999999998 89999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhH
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
||+|+.........++...+++|+.++.+++++|++.+++++||+||.++ |+.....+.+|+.|..|. ++|+.||
T Consensus 83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~-~g~~~~~~~~e~~~~~~~----~~Y~~sK 157 (341)
T 3enk_A 83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATV-YGVPERSPIDETFPLSAT----NPYGQTK 157 (341)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG-BCSCSSSSBCTTSCCBCS----SHHHHHH
T ss_pred EECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceE-ecCCCCCCCCCCCCCCCC----ChhHHHH
Confidence 99999865555556677889999999999999999999999999999998 566666778898887765 7899999
Q ss_pred HHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC------------CCcHHHHHHHHHcC-CCCeeeC------CC
Q 011770 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE------------ERHLPRIVSLAKLG-LVPFKIG------EP 223 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~------------~~~~~~~i~~~~~g-~~~~~~g------~g 223 (478)
.++|++++.+..+ ..+++++++||++||||++ ...++.+.+..... ..+.++| ++
T Consensus 158 ~~~e~~~~~~~~~------~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 231 (341)
T 3enk_A 158 LMAEQILRDVEAA------DPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDG 231 (341)
T ss_dssp HHHHHHHHHHHHH------CTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTS
T ss_pred HHHHHHHHHHhhc------CCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCC
Confidence 9999999887641 3469999999999999964 22345444444432 3445567 88
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHH
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLG 303 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a 303 (478)
++.++|+||+|+|++++.+++... +...|++||+++|+++++.|+++.+.+.+|.+.+....|.
T Consensus 232 ~~~~~~i~v~Dva~a~~~~~~~~~---------~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------- 295 (341)
T 3enk_A 232 TGVRDYIHVVDLARGHIAALDALE---------RRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVAR------- 295 (341)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHH---------HHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECC-------
T ss_pred CeeEeeEEHHHHHHHHHHHHHhhh---------cCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCC-------
Confidence 999999999999999999987311 1245889999999999999999999999998766543331
Q ss_pred HHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 304 KVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
.+. ......+|++|++++|||+|+++++++|+++++||+++..
T Consensus 296 --------------------~~~--------~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 296 --------------------RPG--------DVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp --------------------CTT--------CCSEECBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred --------------------CCC--------CccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 000 0123468999999999999999999999999999998764
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-47 Score=378.40 Aligned_cols=324 Identities=16% Similarity=0.187 Sum_probs=248.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
++|+|||||||||||++|+++|+++|++ |++++|++.... .....+++++.+|++|.+++.++++++|+|||+|+..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~--~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~~ 88 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHD-LVLIHRPSSQIQ--RLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGYY 88 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECTTSCGG--GGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC----
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEecChHhhh--hhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCccC
Confidence 3469999999999999999999999998 999999765321 1223478999999999999999999999999999964
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccc-cCCCCCCCCCCCCccCCchHhhHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEI-VNGNESLPYFPIDEHVDSYGRSKSVAEQL 168 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~-~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~ 168 (478)
. .+..++...+++|+.++.+++++|.+.+++++||+||.++|.+.... .+ +|+.|..|.....+.|+.+|..+|++
T Consensus 89 ~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~~~~p~~~~~~~Y~~sK~~~e~~ 165 (342)
T 2x4g_A 89 P--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGLFYDSLPSGKSSYVLCKWALDEQ 165 (342)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTCCCSSCCTTSCHHHHHHHHHHHH
T ss_pred c--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCCCCCccccccChHHHHHHHHHHH
Confidence 3 23346678899999999999999999999999999999995332221 34 88888776221237899999999999
Q ss_pred HHHHcCCCCccCCCCcceEEEEeCCceeCCCC-C-CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcc
Q 011770 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE-E-RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGL 246 (478)
Q Consensus 169 v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~-~-~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l 246 (478)
++.+.. . +++++++||+.+|||++ . . ++.++..+..|..+.+ +++.++|+|++|+|++++.+++.
T Consensus 166 ~~~~~~-------~-g~~~~ilrp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~~- 232 (342)
T 2x4g_A 166 AREQAR-------N-GLPVVIGIPGMVLGELDIGPT-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALER- 232 (342)
T ss_dssp HHHHHH-------T-TCCEEEEEECEEECSCCSSCS-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHHH-
T ss_pred HHHHhh-------c-CCcEEEEeCCceECCCCcccc-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHhC-
Confidence 988763 4 89999999999999987 3 3 6677777888876644 56889999999999999999873
Q ss_pred cCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q 011770 247 LDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPL 326 (478)
Q Consensus 247 ~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~ 326 (478)
+. .|++||+++++ +++.|+++.+.+.+|.+.+. .+|.+.+...+.+.+.+....+ ..|.
T Consensus 233 ----------~~-~g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~--------~~~~ 291 (342)
T 2x4g_A 233 ----------GR-IGERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSG--------QLPL 291 (342)
T ss_dssp ----------SC-TTCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC------------------
T ss_pred ----------CC-CCceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhC--------CCCC
Confidence 12 28899999999 99999999999999998877 8898887777666554433222 1233
Q ss_pred CcHHHhhhhcceeEechHhHHHhCCC-CcCCChHHHHHHHHHHHHHccC
Q 011770 327 ILPAEVYKVGVTHYFSLLKAKDELCY-VPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 327 ~~~~~~~~~~~~~~~d~~ka~~~LG~-~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
+++.....+.....+|++|++++||| +| ++++++++++++||++++.
T Consensus 292 ~~~~~~~~~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g~ 339 (342)
T 2x4g_A 292 LDETAIEVMAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDNGY 339 (342)
T ss_dssp ------CCTTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHcCC
Confidence 33333333344567899999999999 99 8999999999999998765
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-47 Score=374.61 Aligned_cols=304 Identities=18% Similarity=0.227 Sum_probs=243.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
||+|||||||||||++|+++|+++| . |++++++.... ......+++++.+|++| +++.++++++|+|||+|+...
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~-~v~~~~~~~~~--~~~~~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~~~~ 75 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-E-IVVIDNLSSGN--EEFVNEAARLVKADLAA-DDIKDYLKGAEEVWHIAANPD 75 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-C-EEEECCCSSCC--GGGSCTTEEEECCCTTT-SCCHHHHTTCSEEEECCCCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-C-EEEEEcCCCCC--hhhcCCCcEEEECcCCh-HHHHHHhcCCCEEEECCCCCC
Confidence 4689999999999999999999999 5 66666654432 22335679999999999 899999999999999999655
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
...+..++...+++|+.||.+++++|++.+++++||+||.++ |+.....+.+|+.|..|. ++|+.||..+|++++
T Consensus 76 ~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~v-yg~~~~~~~~E~~~~~~~----~~Y~~sK~~~e~~~~ 150 (313)
T 3ehe_A 76 VRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTV-YGEAKVIPTPEDYPTHPI----SLYGASKLACEALIE 150 (313)
T ss_dssp CC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGG-GCSCSSSSBCTTSCCCCC----SHHHHHHHHHHHHHH
T ss_pred hhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHH-hCcCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHH
Confidence 444556778899999999999999999999999999999998 566666778888887775 789999999999999
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCC-CcHHHHHHHHHcC-CCCeeeCCCCccccceeHHHHHHHHHHHHhcccC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-RHLPRIVSLAKLG-LVPFKIGEPSVKTDWIYVDNLVLALILASMGLLD 248 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-~~~~~~i~~~~~g-~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~ 248 (478)
.+.. ..+++++++||+.||||++. ..++.++..+..+ ..+.++|++++.++|+|++|+|++++.+++.
T Consensus 151 ~~~~-------~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~--- 220 (313)
T 3ehe_A 151 SYCH-------TFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRG--- 220 (313)
T ss_dssp HHHH-------HTTCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTC---
T ss_pred HHHH-------hcCCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhcc---
Confidence 8764 46899999999999999875 4566677766666 4455789999999999999999999998862
Q ss_pred CCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCc
Q 011770 249 DIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLIL 328 (478)
Q Consensus 249 ~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~ 328 (478)
...+++||+++++++++.|+++.+.+.+|.+.+....|... . .
T Consensus 221 ---------~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------------------------~----~ 263 (313)
T 3ehe_A 221 ---------DERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDR------------------------G----W 263 (313)
T ss_dssp ---------CSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC----------------------------------
T ss_pred ---------CCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCcc------------------------C----C
Confidence 34578999999999999999999999999875433222100 0 0
Q ss_pred HHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCC
Q 011770 329 PAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKS 376 (478)
Q Consensus 329 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~ 376 (478)
..+ .....+|++|++ +|||+|+++++++|+++++|++++....
T Consensus 264 ~~~----~~~~~~d~~k~~-~lG~~p~~~~~e~l~~~~~~~~~~~~~~ 306 (313)
T 3ehe_A 264 KGD----VPVMLLSIEKLK-RLGWKPRYNSEEAVRMAVRDLVEDLDEE 306 (313)
T ss_dssp ----------CCBCCHHHH-HHTCCCSCCHHHHHHHHHHHHHHHHHC-
T ss_pred ccc----cceeccCHHHHH-HcCCCCCCCHHHHHHHHHHHHHhCcccc
Confidence 000 012357999995 5999999999999999999999876653
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=378.97 Aligned_cols=303 Identities=20% Similarity=0.239 Sum_probs=249.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHH--cCCceEEEEecCCCC-----------cccccccCCCeEEEEecCCCHHHH
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVR--RGAYQVRAFDLRTNS-----------PWSHLLINHGVHCIQGDVVSKIDV 72 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~--~G~~~V~~l~r~~~~-----------~~~~~~~~~~v~~v~gDl~d~~~l 72 (478)
++.+++|+|||||||||||++|+++|++ +|++ |++++|.... .........+++++.+|++|.+++
T Consensus 5 ~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 83 (362)
T 3sxp_A 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAK-VVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDL 83 (362)
T ss_dssp SCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSE-EEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHH
T ss_pred chhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCe-EEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHH
Confidence 3457789999999999999999999999 8999 9999986641 011122345689999999999999
Q ss_pred HHH-hcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 73 EKA-ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 73 ~~~-l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
.++ ..++|+|||+||... .+..++...+++|+.||.+++++|++.+++ |||+||.++ |+.... +.+|+.+..|.
T Consensus 84 ~~~~~~~~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~v-yg~~~~-~~~E~~~~~p~ 158 (362)
T 3sxp_A 84 RRLEKLHFDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGV-YGNTKA-PNVVGKNESPE 158 (362)
T ss_dssp HHHTTSCCSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGG-GCSCCS-SBCTTSCCCCS
T ss_pred HHhhccCCCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHH-hCCCCC-CCCCCCCCCCC
Confidence 999 789999999999543 244567889999999999999999999986 999999998 454444 88998887775
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCc
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
++|+.||..+|++++.+.. . ++++++||++||||++. ..++.++..+..|..+.++|++++
T Consensus 159 ----~~Y~~sK~~~E~~~~~~~~--------~-~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (362)
T 3sxp_A 159 ----NVYGFSKLCMDEFVLSHSN--------D-NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQ 225 (362)
T ss_dssp ----SHHHHHHHHHHHHHHHTTT--------T-SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCC
T ss_pred ----ChhHHHHHHHHHHHHHHhc--------c-CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCe
Confidence 8899999999999998753 2 89999999999999975 467888888889988777899999
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHH
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKV 305 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~ 305 (478)
.++|+|++|+|++++.+++. ...| +||+++|+++++.|+++.+.+.+| +.+....|.+.
T Consensus 226 ~~~~i~v~Dva~ai~~~~~~------------~~~g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~------- 284 (362)
T 3sxp_A 226 LRDFVYIEDVIQANVKAMKA------------QKSG-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPY------- 284 (362)
T ss_dssp EEECEEHHHHHHHHHHHTTC------------SSCE-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC----------
T ss_pred EEccEEHHHHHHHHHHHHhc------------CCCC-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCC-------
Confidence 99999999999999999873 2346 999999999999999999999999 65544444210
Q ss_pred HHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 306 FSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
........+|++|++++|||+|+++++++|+++++||+++...
T Consensus 285 ---------------------------~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 327 (362)
T 3sxp_A 285 ---------------------------AFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFKG 327 (362)
T ss_dssp -------------------------------CCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHTCC---
T ss_pred ---------------------------cCcccceecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 0111234689999999999999999999999999999876554
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-46 Score=368.16 Aligned_cols=306 Identities=20% Similarity=0.249 Sum_probs=245.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~ 88 (478)
||+|||||||||||++|+++|+++|++ |++++|...... .....+++++.+|++|.+++.++++ ++|+|||+|+.
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~ 77 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLS-VVVVDNLQTGHE--DAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAAD 77 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCG--GGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCE-EEEEeCCCcCch--hhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence 468999999999999999999999998 999998754321 1122378999999999999999998 89999999997
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHH
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~ 168 (478)
.....+..++...+++|+.+|.+++++|++.+++++||+||.++ |+.....+.+|+.|..|. ++|+.||..+|++
T Consensus 78 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~-~~~~~~~~~~E~~~~~~~----~~Y~~sK~~~e~~ 152 (330)
T 2c20_A 78 SLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAAT-YGEVDVDLITEETMTNPT----NTYGETKLAIEKM 152 (330)
T ss_dssp CCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGG-GCSCSSSSBCTTSCCCCS----SHHHHHHHHHHHH
T ss_pred cCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCcee-eCCCCCCCCCcCCCCCCC----ChHHHHHHHHHHH
Confidence 54443445677889999999999999999999999999999998 555555678898887664 7899999999999
Q ss_pred HHHHcCCCCccCCCCcceEEEEeCCceeCCCC-----------CCcHHHHHHHHHc-CCCCeeeC------CCCccccce
Q 011770 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE-----------ERHLPRIVSLAKL-GLVPFKIG------EPSVKTDWI 230 (478)
Q Consensus 169 v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~-----------~~~~~~~i~~~~~-g~~~~~~g------~g~~~~~~v 230 (478)
++.+.. ..+++++++||+.||||+. ..+++.+++.+.. +..+.++| ++++.++|+
T Consensus 153 ~~~~~~-------~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v 225 (330)
T 2c20_A 153 LHWYSQ-------ASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYI 225 (330)
T ss_dssp HHHHHH-------TSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEE
T ss_pred HHHHHH-------HhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeE
Confidence 988764 4689999999999999963 2244555554443 33455566 678899999
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFY 310 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~ 310 (478)
|++|+|++++.+++.... ...+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 226 ~v~Dva~a~~~~~~~~~~---------~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------- 283 (330)
T 2c20_A 226 HVEDLVAAHFLGLKDLQN---------GGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRR------------- 283 (330)
T ss_dssp EHHHHHHHHHHHHHHHHT---------TCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCC-------------
T ss_pred eHHHHHHHHHHHHhcccc---------CCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCC-------------
Confidence 999999999999874111 1236899999999999999999999999987654333210
Q ss_pred HhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCC-ChHHHHHHHHHHHHHccCC
Q 011770 311 SVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIV-SPREGMAATISYWQDRKRK 375 (478)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~~~e~l~~~i~~~~~~~~~ 375 (478)
. ..+ ....+|++|++++|||+|++ +++++++++++|++++..+
T Consensus 284 -------~----~~~-----------~~~~~d~~k~~~~lG~~p~~~~l~~~l~~~~~~~~~~~~~ 327 (330)
T 2c20_A 284 -------A----GDP-----------ARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNG 327 (330)
T ss_dssp -------S----SCC-----------SEECBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHCSSC
T ss_pred -------C----Ccc-----------cccccCHHHHHHHhCCCCccCCHHHHHHHHHHHHHHhhhc
Confidence 0 111 13468999999999999998 9999999999999987754
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=376.86 Aligned_cols=308 Identities=21% Similarity=0.236 Sum_probs=251.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc---------cCCCeEEEEecCCCHHHHHHHhcCc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL---------INHGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~---------~~~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
++||+|||||||||||++|+++|+++|++ |++++|++........ ...+++++.+|++|.+++.++++++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQK-VVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 56789999999999999999999999998 9999987642111100 0367999999999999999999999
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchH
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYG 159 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~ 159 (478)
|+|||+|+......+..++...+++|+.+|.+++++|++.+++++||+||.++ |+.....+.+|+.+..|. ++|+
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~-~~~~~~~~~~E~~~~~~~----~~Y~ 178 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSST-YGDHPGLPKVEDTIGKPL----SPYA 178 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGG-GTTCCCSSBCTTCCCCCC----SHHH
T ss_pred CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHh-cCCCCCCCCCCCCCCCCC----ChhH
Confidence 99999999754434445677889999999999999999999999999999998 555555678888887664 7899
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
.+|..+|++++.+.. ..+++++++||+.||||+.. ..++.++..+..|..+.++|++++.++|+|++
T Consensus 179 ~sK~~~e~~~~~~~~-------~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~ 251 (352)
T 1sb8_A 179 VTKYVNELYADVFSR-------CYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIE 251 (352)
T ss_dssp HHHHHHHHHHHHHHH-------HHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHH
T ss_pred HHHHHHHHHHHHHHH-------HcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHH
Confidence 999999999988753 35899999999999999864 34677888888888887889999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhc---CCCCCcccCChHHHHHHHHHHHHHH
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTL---DYDLPKSWLAVPHALFLGKVFSFFY 310 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~l---g~~~~~~~lp~~~~~~~a~~~~~~~ 310 (478)
|+|++++.+++. .+...|++||+++++++|+.|+++.+.+.+ |.+.+.. |..
T Consensus 252 Dva~a~~~~~~~----------~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~--~~~------------- 306 (352)
T 1sb8_A 252 NTVQANLLAATA----------GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHRE--PVY------------- 306 (352)
T ss_dssp HHHHHHHHHHTC----------CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCC--CEE-------------
T ss_pred HHHHHHHHHHhc----------cccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCC--cee-------------
Confidence 999999988862 123468899999999999999999999999 8765422 100
Q ss_pred HhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 311 SVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
.+ ..+ .. .....+|++|++++|||+|+++++++|+++++||+++
T Consensus 307 ---~~-------~~~----~~----~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 350 (352)
T 1sb8_A 307 ---RD-------FRE----GD----VRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 350 (352)
T ss_dssp ---EC-------CCT----TC----CSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred ---cC-------CCc----cc----hhhccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 00 001 00 1234579999999999999999999999999999865
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=379.29 Aligned_cols=306 Identities=21% Similarity=0.229 Sum_probs=244.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.+++|+|||||||||||++|+++|+++| ++ |++++|+............+++++.+|++|.+++.++++++|+|||+|
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A 107 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQ-VHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLA 107 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSE-EEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECC
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCce-EEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECC
Confidence 3567899999999999999999999999 98 999998765321111124679999999999999999999999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceeeCCccccCCC--CCC---CC-CCCCccCCchH
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVFGGKEIVNGN--ESL---PY-FPIDEHVDSYG 159 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~g~~~~~~~~--E~~---p~-~p~~~~~~~Y~ 159 (478)
+......+..++...+++|+.++.+++++|++. ++++|||+||.++ |+.....+.+ |+. |. .|. ++|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~v-yg~~~~~~~~~~E~~~~~~~~~~~----~~Y~ 182 (377)
T 2q1s_A 108 TYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCS-IAEKTFDDAKATEETDIVSLHNND----SPYS 182 (377)
T ss_dssp CCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC---------------CCCCCCCSSCCC----SHHH
T ss_pred CccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHH-cCCCCCCCcCcccccccccccCCC----CchH
Confidence 975444344567788999999999999999999 9999999999998 5554444566 776 54 443 7899
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC---------------CCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE---------------ERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~---------------~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
.+|..+|++++.+.. ..+++++++||+.||||++ ...++.++..+..|..+.++|+++
T Consensus 183 ~sK~~~E~~~~~~~~-------~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~ 255 (377)
T 2q1s_A 183 MSKIFGEFYSVYYHK-------QHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGV 255 (377)
T ss_dssp HHHHHHHHHHHHHHH-------HHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGC
T ss_pred HHHHHHHHHHHHHHH-------HhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCC
Confidence 999999999988753 3589999999999999987 345778888888888777789999
Q ss_pred ccccceeHHHHHHH-HHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHH
Q 011770 225 VKTDWIYVDNLVLA-LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLG 303 (478)
Q Consensus 225 ~~~~~v~V~Dva~a-~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a 303 (478)
+.++|+|++|+|++ ++.+++. +. .| +||+++++++++.|+++.+.+.+|.+.+....|.
T Consensus 256 ~~~~~i~v~Dva~a~i~~~~~~-----------~~-~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~------- 315 (377)
T 2q1s_A 256 ATRDFIFVEDVANGLIACAADG-----------TP-GG-VYNIASGKETSIADLATKINEITGNNTELDRLPK------- 315 (377)
T ss_dssp CEECCEEHHHHHHHHHHHHHHC-----------CT-TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCC-------
T ss_pred eEEeeEEHHHHHHHHHHHHHhc-----------CC-CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCC-------
Confidence 99999999999999 9988873 22 56 9999999999999999999999998765433331
Q ss_pred HHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 304 KVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
.+.+.. ....+|++|++++|||+|+++++++|+++++||+++.
T Consensus 316 ------------------------~~~~~~---~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 316 ------------------------RPWDNS---GKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANL 358 (377)
T ss_dssp ------------------------CGGGCC----CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHTH
T ss_pred ------------------------Cccccc---cccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhh
Confidence 001100 1346899999999999999999999999999998753
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=368.23 Aligned_cols=303 Identities=24% Similarity=0.271 Sum_probs=244.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCc-cccc---ccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSP-WSHL---LINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~-~~~~---~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
+|+|||||||||||++|+++|+++| ++ |++++|..... .... ....+++++.+|++|.+++.+++.++|+|||
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 81 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWE-VINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH 81 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCE-EEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCE-EEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence 4689999999999999999999997 77 99999865311 1111 1135789999999999999999999999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC-CeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI-QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKS 163 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v-~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~ 163 (478)
+|+......+..++...+++|+.||.+++++|.+.+. +++||+||.+| ||.....+.+|+.|..|. ++|+.||.
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v-yg~~~~~~~~E~~~~~~~----~~Y~~sK~ 156 (336)
T 2hun_A 82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEV-YGDILKGSFTENDRLMPS----SPYSATKA 156 (336)
T ss_dssp CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGG-GCCCSSSCBCTTBCCCCC----SHHHHHHH
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHH-HCCCCCCCcCCCCCCCCC----CccHHHHH
Confidence 9997544344456778899999999999999999875 79999999998 554444577888877664 78999999
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALIL 241 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~ 241 (478)
.+|++++.+.. ..+++++++||+.||||++. ..++.++..+..|..+.++|++++.++|+|++|+|++++.
T Consensus 157 ~~e~~~~~~~~-------~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~ 229 (336)
T 2hun_A 157 ASDMLVLGWTR-------TYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIEL 229 (336)
T ss_dssp HHHHHHHHHHH-------HTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHH
Confidence 99999988764 46899999999999999874 4567788888888877788999999999999999999999
Q ss_pred HHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccccc
Q 011770 242 ASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWW 321 (478)
Q Consensus 242 a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (478)
+++. ...|++||+++++++++.|+++.+.+.+|.+.+.+... .
T Consensus 230 ~~~~------------~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----------------------~--- 272 (336)
T 2hun_A 230 VLLK------------GESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELV----------------------E--- 272 (336)
T ss_dssp HHHH------------CCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEE----------------------C---
T ss_pred HHhC------------CCCCCEEEeCCCCcccHHHHHHHHHHHhCCCccccccc----------------------C---
Confidence 8873 23578999999999999999999999999865422100 0
Q ss_pred CCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 322 LPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
..+.. .....+|++|++++|||+|+++++++|+++++||+++
T Consensus 273 -~~~~~--------~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~ 314 (336)
T 2hun_A 273 -DRPGH--------DLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKN 314 (336)
T ss_dssp -CCTTC--------CCCCCBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHT
T ss_pred -CCCCc--------hhhhcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC
Confidence 11100 0123579999999999999999999999999999876
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=365.99 Aligned_cols=301 Identities=20% Similarity=0.179 Sum_probs=245.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC--cCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG--VDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViHl 85 (478)
..++|+|||||||||||++|+++|+++|++ |++++|++... . .+++++.+|++|.+++.+++++ +|+|||+
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~--~----l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 81 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNVE-VFGTSRNNEAK--L----PNVEMISLDIMDSQRVKKVISDIKPDYIFHL 81 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCTTCC--C----TTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCCE-EEEEecCCccc--c----ceeeEEECCCCCHHHHHHHHHhcCCCEEEEc
Confidence 346789999999999999999999999998 99999876531 1 1789999999999999999986 9999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceeeCCc--cccCCCCCCCCCCCCccCCchHhhH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVFGGK--EIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~g~~--~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
|+......+..++...+++|+.||.+++++|.+. +++++||+||.++| +.. ...+.+|+.|..|. ++|+.||
T Consensus 82 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~-g~~~~~~~~~~E~~~~~~~----~~Y~~sK 156 (321)
T 2pk3_A 82 AAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEY-GMILPEESPVSEENQLRPM----SPYGVSK 156 (321)
T ss_dssp CSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGT-BSCCGGGCSBCTTSCCBCC----SHHHHHH
T ss_pred CcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhc-CCCCCCCCCCCCCCCCCCC----CccHHHH
Confidence 9976544444567889999999999999999886 68999999999984 543 45678898877664 7899999
Q ss_pred HHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHc---C--CCCeeeCCCCccccceeHHHH
Q 011770 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKL---G--LVPFKIGEPSVKTDWIYVDNL 235 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~---g--~~~~~~g~g~~~~~~v~V~Dv 235 (478)
.++|++++.+.. ..+++++++||+++|||+... .++.++..+.. | ..+..++++++.++|+|++|+
T Consensus 157 ~~~E~~~~~~~~-------~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dv 229 (321)
T 2pk3_A 157 ASVGMLARQYVK-------AYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDI 229 (321)
T ss_dssp HHHHHHHHHHHH-------HHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHH
T ss_pred HHHHHHHHHHHH-------HcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHH
Confidence 999999988753 358999999999999998753 56667666665 7 466678898999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhh
Q 011770 236 VLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYP 315 (478)
Q Consensus 236 a~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~ 315 (478)
|++++.+++. ...|++||+++++++++.|+++.+.+.+|.+.+....|..
T Consensus 230 a~a~~~~~~~------------~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~------------------ 279 (321)
T 2pk3_A 230 VQAYWLLSQY------------GKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQ------------------ 279 (321)
T ss_dssp HHHHHHHHHH------------CCTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGG------------------
T ss_pred HHHHHHHHhC------------CCCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeecccc------------------
Confidence 9999999873 1357899999999999999999999999987554443321
Q ss_pred ccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 316 WLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 316 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
..+. + .....+|++|++++|||+|+++++++|+++++||+++
T Consensus 280 -------~~~~----~----~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 321 (321)
T 2pk3_A 280 -------LRPS----E----VPTLIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQA 321 (321)
T ss_dssp -------CCSS----C----CSBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHTC
T ss_pred -------CCCc----c----cchhccCHHHHHHHcCCCcCCCHHHHHHHHHHHHhcC
Confidence 0000 0 1234689999999999999999999999999999753
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=369.69 Aligned_cols=298 Identities=15% Similarity=0.121 Sum_probs=240.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC--cCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG--VDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViHl 85 (478)
.++||+|||||||||||++|+++|+++|+. .. ....+++++++|++|.+++.+++++ +|+|||+
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~-------~~-------~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih~ 68 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAGL-------PG-------EDWVFVSSKDADLTDTAQTRALFEKVQPTHVIHL 68 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTCC-------TT-------CEEEECCTTTCCTTSHHHHHHHHHHSCCSEEEEC
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCCc-------cc-------ccccccCceecccCCHHHHHHHHhhcCCCEEEEC
Confidence 467899999999999999999999999971 11 1112344567999999999999986 9999999
Q ss_pred ccCCCC-chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCC----CCCCCCccCCchHh
Q 011770 86 ASYGMS-GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESL----PYFPIDEHVDSYGR 160 (478)
Q Consensus 86 Aa~~~~-~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~----p~~p~~~~~~~Y~~ 160 (478)
|+.... .....++...+++|+.||.+++++|++.+++|+||+||.++ |+.....+.+|+. +..|. ..+|+.
T Consensus 69 A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~v-yg~~~~~~~~E~~~~~~~~~p~---~~~Y~~ 144 (319)
T 4b8w_A 69 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCI-FPDKTTYPIDETMIHNGPPHNS---NFGYSY 144 (319)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGG-SCSSCCSSBCGGGGGBSCCCSS---SHHHHH
T ss_pred ceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhh-cCCCCCCCccccccccCCCCCC---cchHHH
Confidence 997432 23445677889999999999999999999999999999998 5666667788876 33332 136999
Q ss_pred hHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHH----HHcCCCCeeeCCCCccccce
Q 011770 161 SKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSL----AKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 161 sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~----~~~g~~~~~~g~g~~~~~~v 230 (478)
||.++|++++.+.. ..+++++++||+.||||++. ..++.++.. +..|..+.++|++++.++|+
T Consensus 145 sK~~~E~~~~~~~~-------~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 217 (319)
T 4b8w_A 145 AKRMIDVQNRAYFQ-------QYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFI 217 (319)
T ss_dssp HHHHHHHHHHHHHH-------HHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEE
T ss_pred HHHHHHHHHHHHHH-------hhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEE
Confidence 99999999988764 46899999999999999875 245666655 78888888899999999999
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFY 310 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~ 310 (478)
||+|+|++++.+++. .....+++||+++++++|+.|+++.+.+.+|.+.+....|.
T Consensus 218 ~v~Dva~a~~~~~~~----------~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-------------- 273 (319)
T 4b8w_A 218 YSLDLAQLFIWVLRE----------YNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTT-------------- 273 (319)
T ss_dssp EHHHHHHHHHHHHHH----------CCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETT--------------
T ss_pred eHHHHHHHHHHHHhc----------cccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCC--------------
Confidence 999999999999974 12345779999999999999999999999998765433221
Q ss_pred HhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 311 SVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.+.. .....+|++|++++|||+|.++++++|+++++||+++...
T Consensus 274 -------------~~~~--------~~~~~~d~~k~~~~lg~~p~~~~~~~l~~~~~~~~~~~~~ 317 (319)
T 4b8w_A 274 -------------KSDG--------QFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYEQ 317 (319)
T ss_dssp -------------SCCC--------CSCCCBCCHHHHHHCTTCCCCCHHHHHHHHHHHHHHSCSS
T ss_pred -------------CCcC--------cccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 0000 0123589999999999999999999999999999987653
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=365.04 Aligned_cols=296 Identities=24% Similarity=0.271 Sum_probs=243.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~ 89 (478)
|+||||||+||||++++++|+++|++ |++++|...... .....+++++++|++|.+++.++++ ++|+|||+|+..
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~ 77 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLE-VAVLDNLATGKR--ENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQA 77 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCE-EEEECCCSSCCG--GGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECCCcCch--hhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECcccc
Confidence 47999999999999999999999998 999988544221 1122568899999999999999998 899999999975
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc-ceeeCC-ccccCCCCCCCCCCCCccCCchHhhHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY-NVVFGG-KEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~-~v~~g~-~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~ 167 (478)
....+..++...+++|+.|+.+++++|++.+++++||+||. ++ |+. ....+.+|+.|..|. ++|+.||.++|+
T Consensus 78 ~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~-~g~~~~~~~~~E~~~~~~~----~~Y~~sK~~~e~ 152 (311)
T 2p5y_A 78 SVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAI-YGEVPEGERAEETWPPRPK----SPYAASKAAFEH 152 (311)
T ss_dssp CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHH-HCCCCTTCCBCTTSCCCCC----SHHHHHHHHHHH
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhh-cCCCCCCCCcCCCCCCCCC----ChHHHHHHHHHH
Confidence 44444556778899999999999999999999999999999 66 554 444567888776664 789999999999
Q ss_pred HHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHHHHHcCCCCeee-----CCCCccccceeHHHHHH
Q 011770 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVSLAKLGLVPFKI-----GEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~~~~~g~~~~~~-----g~g~~~~~~v~V~Dva~ 237 (478)
+++.+.. ..+++++++||++||||++.. .++.+++.+..|..+.++ |++++.++|+|++|+|+
T Consensus 153 ~~~~~~~-------~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ 225 (311)
T 2p5y_A 153 YLSVYGQ-------SYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225 (311)
T ss_dssp HHHHHHH-------HHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHH
T ss_pred HHHHHHH-------HcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHH
Confidence 9988753 468999999999999998643 466777777788877677 88899999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcc
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWL 317 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~ 317 (478)
+++.+++. + |++||+++++++|+.|+++.+.+.+|.+.+....|...
T Consensus 226 a~~~~~~~-----------~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------------------- 272 (311)
T 2p5y_A 226 AHALALFS-----------L---EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRP------------------- 272 (311)
T ss_dssp HHHHHHHH-----------C---CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCT-------------------
T ss_pred HHHHHHhC-----------C---CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCc-------------------
Confidence 99999872 1 78999999999999999999999999876543333100
Q ss_pred ccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 318 NRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
.. .....+|++|+++ |||+|+++++++|+++++|++++
T Consensus 273 -----~~-----------~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~~~ 310 (311)
T 2p5y_A 273 -----GD-----------LERSVLSPLKLMA-HGWRPKVGFQEGIRLTVDHFRGA 310 (311)
T ss_dssp -----TC-----------CSBCCBCCHHHHT-TTCCCSSCHHHHHHHHHHHHHTC
T ss_pred -----cc-----------hhhccCCHHHHHH-CCCCCCCCHHHHHHHHHHHHHhh
Confidence 00 0134689999999 99999999999999999999763
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=366.28 Aligned_cols=308 Identities=20% Similarity=0.240 Sum_probs=245.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC------ccccc--c---cCCCeEEEEecCCCHHHHHHHhc--
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS------PWSHL--L---INHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~------~~~~~--~---~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
+|+|||||||||||++|+++|+++|++ |++++|.... ..... . ...+++++.+|++|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYL-PVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCC-EEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 478999999999999999999999999 9999986542 10000 0 13578999999999999999998
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCc
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS 157 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~ 157 (478)
++|+|||+|+.........++...+++|+.|+.+++++|++.+++++||+||.++ |+.....+.+|+.|..|. .++
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~-~g~~~~~~~~E~~~~~p~---~~~ 156 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATV-YGNPQYLPLDEAHPTGGC---TNP 156 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG-GCSCSSSSBCTTSCCCCC---SSH
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHH-hCCCCCCCcCCCCCCCCC---CCc
Confidence 8999999999754444445677889999999999999999999999999999998 555555678888877662 378
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC------------CCcHHHHHHHHH-cCCCCeeeC---
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE------------ERHLPRIVSLAK-LGLVPFKIG--- 221 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~------------~~~~~~~i~~~~-~g~~~~~~g--- 221 (478)
|+.||..+|++++.+..+ ..+++++++||+++|||+. ..+++.+++.+. .+..+.++|
T Consensus 157 Y~~sK~~~e~~~~~~~~~------~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 230 (348)
T 1ek6_A 157 YGKSKFFIEEMIRDLCQA------DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDY 230 (348)
T ss_dssp HHHHHHHHHHHHHHHHHH------CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCS
T ss_pred hHHHHHHHHHHHHHHHhc------CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcc
Confidence 999999999999887531 1359999999999999953 235566666666 566666666
Q ss_pred ---CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCC-ceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChH
Q 011770 222 ---EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASG-QPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVP 297 (478)
Q Consensus 222 ---~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g-~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~ 297 (478)
++++.++|+|++|+|++++.+++.. ....| ++||+++++++|+.|+++.+.+.+|.+.+....|.
T Consensus 231 ~~~~g~~~~~~i~v~Dva~a~~~~~~~~----------~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~- 299 (348)
T 1ek6_A 231 DTEDGTGVRDYIHVVDLAKGHIAALRKL----------KEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR- 299 (348)
T ss_dssp SSSSSSCEECEEEHHHHHHHHHHHHHHH----------TTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-
T ss_pred cCCCCceEEeeEEHHHHHHHHHHHHhcc----------cccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-
Confidence 6788999999999999999998731 01234 89999999999999999999999998765433221
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 298 HALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
.+. + .....+|++|++++|||+|+++++++++++++|++++..
T Consensus 300 --------------------------~~~----~----~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 342 (348)
T 1ek6_A 300 --------------------------REG----D----VAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (348)
T ss_dssp --------------------------CTT----C----CSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred --------------------------CCc----c----chhhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccc
Confidence 000 0 123468999999999999999999999999999998754
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=367.26 Aligned_cols=302 Identities=21% Similarity=0.272 Sum_probs=247.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
||+|||||||||||++|+++|+++ |++ |++++|+...... ......+++++.+|++|.+++.++++++|+|||+
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVH-VTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY 82 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCE-EEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCE-EEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEEC
Confidence 579999999999999999999999 888 9999987532111 1112357999999999999999999999999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccc------------cCCCCCCCCCCCCc
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEI------------VNGNESLPYFPIDE 153 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~------------~~~~E~~p~~p~~~ 153 (478)
|+......+..++...+++|+.||.+++++|.+.++ ++||+||.+|| |.... .+.+|+.|..|.
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vy-g~~~~~~~~~~~~~~~~~~~~E~~~~~~~-- 158 (348)
T 1oc2_A 83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVY-GDLPLREDLPGHGEGPGEKFTAETNYNPS-- 158 (348)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGG-CCBCCGGGSTTTTCSTTSSBCTTSCCCCC--
T ss_pred CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEeccccee-CCCcccccccccccccCCCcCCCCCCCCC--
Confidence 997544334456778899999999999999999998 99999999984 43321 567887776664
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
++|+.||..+|++++.+.. ..+++++++||+.||||++. ..++.++..+..|..+.+++++++.++|+|
T Consensus 159 --~~Y~~sK~~~e~~~~~~~~-------~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 229 (348)
T 1oc2_A 159 --SPYSSTKAASDLIVKAWVR-------SFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIH 229 (348)
T ss_dssp --SHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEE
T ss_pred --CccHHHHHHHHHHHHHHHH-------HhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEE
Confidence 7899999999999988753 45899999999999999874 466778888888887778899999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCccc-CChHHHHHHHHHHHHHH
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSW-LAVPHALFLGKVFSFFY 310 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~-lp~~~~~~~a~~~~~~~ 310 (478)
++|+|++++.+++. ...|++||+++++++++.|+++.+.+.+|.+.+... .+
T Consensus 230 v~Dva~~~~~~~~~------------~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~--------------- 282 (348)
T 1oc2_A 230 TNDHSTGVWAILTK------------GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT--------------- 282 (348)
T ss_dssp HHHHHHHHHHHHHH------------CCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEEC---------------
T ss_pred HHHHHHHHHHHhhC------------CCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCC---------------
Confidence 99999999999873 235789999999999999999999999998754221 00
Q ss_pred HhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCC-hHHHHHHHHHHHHHcc
Q 011770 311 SVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVS-PREGMAATISYWQDRK 373 (478)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~-~~e~l~~~i~~~~~~~ 373 (478)
..|.. .....+|++|++++|||+|+++ ++++|+++++|++++.
T Consensus 283 ------------~~~~~--------~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~ 326 (348)
T 1oc2_A 283 ------------DRAGH--------DLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQ 326 (348)
T ss_dssp ------------CCTTC--------CCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTH
T ss_pred ------------CCCCc--------ccccccCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhh
Confidence 11100 1123579999999999999987 9999999999998753
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=365.96 Aligned_cols=303 Identities=23% Similarity=0.324 Sum_probs=246.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc---C---CceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR---G---AYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~---G---~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
|+|||||||||||++|+++|+++ | ++ |++++|........ .....+++++.+|++|.+++.+++.++|+
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 79 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADE-VIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDA 79 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSE-EEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceE-EEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCE
Confidence 47999999999999999999997 7 88 99999865321101 11135789999999999999999999999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhh
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~s 161 (478)
|||+|+......+..++...+++|+.||.+++++|.+.+++++||+||.++ |+.....+.+|+.|..|. ++|+.|
T Consensus 80 Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~v-yg~~~~~~~~E~~~~~~~----~~Y~~s 154 (337)
T 1r6d_A 80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQV-YGSIDSGSWTESSPLEPN----SPYAAS 154 (337)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGG-GCCCSSSCBCTTSCCCCC----SHHHHH
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHH-hCCCCCCCCCCCCCCCCC----CchHHH
Confidence 999999754433445677889999999999999999999999999999998 554444567888877664 789999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLAL 239 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~ 239 (478)
|..+|++++.+.. ..+++++++||+.+|||++. ..++.++..+..|..+.++|++++.++|+|++|+|+++
T Consensus 155 K~~~e~~~~~~~~-------~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 227 (337)
T 1r6d_A 155 KAGSDLVARAYHR-------TYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGI 227 (337)
T ss_dssp HHHHHHHHHHHHH-------HHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHH
Confidence 9999999988753 46899999999999999874 45777888888888777789999999999999999999
Q ss_pred HHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccc
Q 011770 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNR 319 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~ 319 (478)
+.+++. ...|++||+++++++++.|+++.+.+.+|.+.+..... .
T Consensus 228 ~~~~~~------------~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----------------------~- 272 (337)
T 1r6d_A 228 ALVLAG------------GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKV----------------------A- 272 (337)
T ss_dssp HHHHHH------------CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEE----------------------C-
T ss_pred HHHHhC------------CCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceec----------------------C-
Confidence 998873 23578999999999999999999999999764321100 0
Q ss_pred ccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 320 WWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..+.. .....+|++|++++|||+|+++++++|+++++||+++.
T Consensus 273 ---~~~~~--------~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~ 315 (337)
T 1r6d_A 273 ---DRKGH--------DLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENR 315 (337)
T ss_dssp ---CCTTC--------CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCH
T ss_pred ---CCCCC--------cceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhch
Confidence 11100 01234799999999999999999999999999998754
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-45 Score=369.01 Aligned_cols=302 Identities=20% Similarity=0.150 Sum_probs=246.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
.+||+|||||||||||++|+++|+++|++ |++++|++.... .....+++++.+|++|.+++.++++++|+|||+|+.
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~--~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~ 103 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHY-VIASDWKKNEHM--TEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD 103 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCSSS--CGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCe-EEEEECCCccch--hhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence 46789999999999999999999999998 999999765321 123457899999999999999999999999999996
Q ss_pred CCCchh-hhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCcc-----ccCCCCCC--CCCCCCccCCchHh
Q 011770 89 GMSGKE-MLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKE-----IVNGNESL--PYFPIDEHVDSYGR 160 (478)
Q Consensus 89 ~~~~~~-~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~-----~~~~~E~~--p~~p~~~~~~~Y~~ 160 (478)
...... ..++...+++|+.|+.+++++|++.++++|||+||.++| +... ..+.+|+. +..| .++|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~-~~~~~~~~~~~~~~E~~~~~~~~----~~~Y~~ 178 (379)
T 2c5a_A 104 MGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIY-PEFKQLETTNVSLKESDAWPAEP----QDAFGL 178 (379)
T ss_dssp CCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGS-CGGGSSSSSSCEECGGGGSSBCC----SSHHHH
T ss_pred cCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehhee-CCCCCCCccCCCcCcccCCCCCC----CChhHH
Confidence 543221 456778899999999999999999999999999999985 4322 12356655 3333 378999
Q ss_pred hHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHHHHHHcCCC-CeeeCCCCccccceeHH
Q 011770 161 SKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIVSLAKLGLV-PFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 161 sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i~~~~~g~~-~~~~g~g~~~~~~v~V~ 233 (478)
+|..+|++++.+.. ..+++++++||+.||||++.. .++.++..+..+.. +.++|++++.++|+|++
T Consensus 179 sK~~~E~~~~~~~~-------~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~ 251 (379)
T 2c5a_A 179 EKLATEELCKHYNK-------DFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFID 251 (379)
T ss_dssp HHHHHHHHHHHHHH-------HHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHH
T ss_pred HHHHHHHHHHHHHH-------HHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHH
Confidence 99999999988753 468999999999999998643 56777777777765 66789999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhh
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVL 313 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~ 313 (478)
|+|++++.+++. + .+++||+++++++++.|+++.+.+.+|.+.+...+|.
T Consensus 252 Dva~ai~~~l~~-----------~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~----------------- 301 (379)
T 2c5a_A 252 ECVEGVLRLTKS-----------D--FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG----------------- 301 (379)
T ss_dssp HHHHHHHHHHHS-----------S--CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC-----------------
T ss_pred HHHHHHHHHhhc-----------c--CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCC-----------------
Confidence 999999999873 1 4679999999999999999999999998765544331
Q ss_pred hhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 314 YPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
+. . .....+|++|++++|||+|+++++++|+++++|++++..
T Consensus 302 -----------~~----~----~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 343 (379)
T 2c5a_A 302 -----------PE----G----VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIE 343 (379)
T ss_dssp -----------CC----C----CSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------CC----C----cccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhHh
Confidence 10 0 113468999999999999999999999999999987644
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=366.11 Aligned_cols=297 Identities=21% Similarity=0.258 Sum_probs=243.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC---ccc---ccccCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS---PWS---HLLINHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~---~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
.+++|+|||||||||||++|+++|+++|++ |++++|++.. ... ......+++++.+|++ ++|+
T Consensus 4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~----------~~d~ 72 (321)
T 3vps_A 4 NTLKHRILITGGAGFIGGHLARALVASGEE-VTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS----------DVRL 72 (321)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCC-EEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT----------TEEE
T ss_pred ccCCCeEEEECCCChHHHHHHHHHHHCCCE-EEEEecCCcccccchhhhhhhccCCCeeEEeCccc----------cCCE
Confidence 356789999999999999999999999999 9999987651 110 1112345667777765 8999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhh
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~s 161 (478)
|||+|+.........++...++ |+.++.+++++|++.+++++||+||.++ |+.....+.+|+.|..|. +.|+.+
T Consensus 73 vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v-~~~~~~~~~~E~~~~~p~----~~Y~~s 146 (321)
T 3vps_A 73 VYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEV-YGQADTLPTPEDSPLSPR----SPYAAS 146 (321)
T ss_dssp EEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGG-GCSCSSSSBCTTSCCCCC----SHHHHH
T ss_pred EEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHH-hCCCCCCCCCCCCCCCCC----ChhHHH
Confidence 9999997655445566677788 9999999999999999999999999998 666666788999888775 889999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcc-eEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCL-YTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl-~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
|..+|++++.+.. ..++ +++++||+.+|||++.. .++.++..+..+..+.++|++++.++|+|++|+|++
T Consensus 147 K~~~E~~~~~~~~-------~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~ 219 (321)
T 3vps_A 147 KVGLEMVAGAHQR-------ASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDK 219 (321)
T ss_dssp HHHHHHHHHHHHH-------SSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHH
Confidence 9999999998864 4688 99999999999998763 678888888888888888999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccc
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLN 318 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~ 318 (478)
++.+++. + ..| +||+++++++++.|+++.+. .+|.+.+....|..
T Consensus 220 ~~~~~~~-----------~-~~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~--------------------- 264 (321)
T 3vps_A 220 LVALANR-----------P-LPS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPR--------------------- 264 (321)
T ss_dssp HHHGGGS-----------C-CCS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCC---------------------
T ss_pred HHHHHhc-----------C-CCC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCC---------------------
Confidence 9999873 1 236 99999999999999999999 99987655443321
Q ss_pred cccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCc-CCChHHHHHHHHHHHHHccCCCC
Q 011770 319 RWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVP-IVSPREGMAATISYWQDRKRKSL 377 (478)
Q Consensus 319 ~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p-~~~~~e~l~~~i~~~~~~~~~~~ 377 (478)
+. ......+|++|++++|||+| +++++++|+++++||+++.....
T Consensus 265 ------~~--------~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~~~~ 310 (321)
T 3vps_A 265 ------PN--------EITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDLDDI 310 (321)
T ss_dssp ------TT--------CCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHHHHHHTSCTTC-
T ss_pred ------CC--------CcceeeccHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhCCCchh
Confidence 00 01234689999999999999 99999999999999998876543
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=364.99 Aligned_cols=308 Identities=22% Similarity=0.240 Sum_probs=243.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhcC--cCE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAARG--VDC 81 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ 81 (478)
..++|+|||||||||||++|+++|+++|++ |++++|+++..... .....+++++.+|++|.+++.+++++ +|+
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 89 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYR-VHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQE 89 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCE
Confidence 456789999999999999999999999998 99999876531100 00235689999999999999999985 699
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC-CeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHh
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI-QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGR 160 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v-~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~ 160 (478)
|||+|+......+..++...+++|+.||.+++++|++.++ +++||+||.++ |+.....+.+|+.|..|. ++|+.
T Consensus 90 Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v-~g~~~~~~~~E~~~~~p~----~~Y~~ 164 (335)
T 1rpn_A 90 VYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEM-FGLIQAERQDENTPFYPR----SPYGV 164 (335)
T ss_dssp EEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGG-GCSCSSSSBCTTSCCCCC----SHHHH
T ss_pred EEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHH-hCCCCCCCCCcccCCCCC----ChhHH
Confidence 9999997554434456778899999999999999999996 89999999998 555555678898887775 78999
Q ss_pred hHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-c----HHHHHHHHHcCCC-CeeeCCCCccccceeHHH
Q 011770 161 SKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-H----LPRIVSLAKLGLV-PFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 161 sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~----~~~~i~~~~~g~~-~~~~g~g~~~~~~v~V~D 234 (478)
||.++|++++.+.. ..+++++++||+++|||+... + +..++..+..|.. ...+|++++.++|+|++|
T Consensus 165 sK~~~e~~~~~~~~-------~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~D 237 (335)
T 1rpn_A 165 AKLYGHWITVNYRE-------SFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGD 237 (335)
T ss_dssp HHHHHHHHHHHHHH-------HHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHH
T ss_pred HHHHHHHHHHHHHH-------HcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHH
Confidence 99999999988753 458999999999999998643 2 4455666667764 346799999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCc-ccCChHHHHHHHHHHHHHHHhh
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPK-SWLAVPHALFLGKVFSFFYSVL 313 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~-~~lp~~~~~~~a~~~~~~~~~~ 313 (478)
+|++++.+++. + .+++||+++++++|+.|+++.+.+.+|.+.+. ..++..
T Consensus 238 va~a~~~~~~~-----------~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------------- 288 (335)
T 1rpn_A 238 YVEAMWLMLQQ-----------D--KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPA---------------- 288 (335)
T ss_dssp HHHHHHHHHHS-----------S--SCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGG----------------
T ss_pred HHHHHHHHHhc-----------C--CCCEEEEeCCCCccHHHHHHHHHHHhCCCcccccccccc----------------
Confidence 99999999873 1 24799999999999999999999999975321 111100
Q ss_pred hhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 314 YPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
. ..| .. .....+|++|++++|||+|+++++++|+++++|++++.
T Consensus 289 --~------~~~----~~----~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 332 (335)
T 1rpn_A 289 --F------FRP----AE----VDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRV 332 (335)
T ss_dssp --G------CCS----SC----CCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred --c------cCC----Cc----chhhcCCHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh
Confidence 0 011 00 11235799999999999999999999999999998764
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=366.43 Aligned_cols=324 Identities=16% Similarity=0.165 Sum_probs=248.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCC-HHHHHHHhcCcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS-KIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d-~~~l~~~l~~~D~ViHlAa~~ 89 (478)
|+|||||||||||++|+++|+++ |++ |++++|+.... .......+++++++|++| .+.+.++++++|+|||+|+..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~~ 78 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYE-VYGLDIGSDAI-SRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIA 78 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCE-EEEEESCCGGG-GGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCE-EEEEeCCcchH-HHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEccccc
Confidence 58999999999999999999998 898 99999876422 112234579999999998 467888999999999999975
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCC---CCCCccCCchHhhHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKSVAE 166 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~---~p~~~~~~~Y~~sK~~aE 166 (478)
.......++...+++|+.++.+++++|++.+ +++||+||.++ |+.....+.+|+.+. .|...+.+.|+.+|..+|
T Consensus 79 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v-~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e 156 (345)
T 2bll_A 79 TPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEV-YGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (345)
T ss_dssp CHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGG-GBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred CccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHH-cCCCCCCCcCCcccccccCcccCcccccHHHHHHHH
Confidence 4433345667789999999999999999999 89999999998 555444566777653 233334568999999999
Q ss_pred HHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC----------cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHH
Q 011770 167 QLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER----------HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLV 236 (478)
Q Consensus 167 ~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~----------~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva 236 (478)
++++.+.. ..+++++++||+.||||++.. .++.++..+..|..+.++|++++.++|+|++|+|
T Consensus 157 ~~~~~~~~-------~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva 229 (345)
T 2bll_A 157 RVIWAYGE-------KEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 229 (345)
T ss_dssp HHHHHHHH-------HHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHH
T ss_pred HHHHHHHH-------hcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHH
Confidence 99988753 468999999999999998642 4677777888888777888899999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC-CCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhh
Q 011770 237 LALILASMGLLDDIPGQKGRPIASGQPYFVSDGF-PINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYP 315 (478)
Q Consensus 237 ~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~-~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~ 315 (478)
++++.+++.. .....|++||+++++ ++|+.|+++.+.+.+|.+.+...+|.+.......
T Consensus 230 ~a~~~~~~~~---------~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~----------- 289 (345)
T 2bll_A 230 EALYRIIENA---------GNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE----------- 289 (345)
T ss_dssp HHHHHHHHCG---------GGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------
T ss_pred HHHHHHHhhc---------cccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCcccccccccc-----------
Confidence 9999998731 111467899999986 8999999999999999876554444321000000
Q ss_pred ccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 316 WLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 316 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
..++... . ........+|++|++++|||+|+++++++|+++++||+++...
T Consensus 290 -------~~~~~~~-~-~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 290 -------SSSYYGK-G-YQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp --------------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred -------chhhccc-c-ccchhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCC
Confidence 0000000 0 0001234689999999999999999999999999999876543
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=369.52 Aligned_cols=321 Identities=18% Similarity=0.194 Sum_probs=247.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHHHhcC--cCEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEKAARG--VDCVF 83 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~~l~~--~D~Vi 83 (478)
+++|+|||||||||||++|+++|+++|++ |++++|++....... ....+++++++|++|.+++.+++++ +|+||
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 85 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 85 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCe-EEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEE
Confidence 56789999999999999999999999998 999999765321110 0135789999999999999999986 89999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhH
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
|+|+......+..++...+++|+.||.+++++|.+.+ ++++||+||.+||.+.....+.+|+.+..|. ++|+.||
T Consensus 86 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~----~~Y~~sK 161 (357)
T 1rkx_A 86 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGY----DPYSNSK 161 (357)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCS----SHHHHHH
T ss_pred ECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCC----CccHHHH
Confidence 9999644434455677889999999999999999987 8999999999995333222456777776654 7899999
Q ss_pred HHHHHHHHHHcCCCCc--cCCCCcceEEEEeCCceeCCCCC---CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 163 SVAEQLVLKSNGRPFK--KNNRKCLYTCAVRPAAIYGPGEE---RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~--~~~~~gl~~~ilRp~~vyGp~~~---~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
..+|++++.+..+... +....+++++++||+.||||++. .+++.+++.+..|..+. ++++++.++|+||+|+|+
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~v~v~Dva~ 240 (357)
T 1rkx_A 162 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVI-IRNPHAIRPWQHVLEPLS 240 (357)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEE-CSCTTCEECCEETHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEE-ECCCCCeeccEeHHHHHH
Confidence 9999999887531000 00012899999999999999874 56788888888888654 456788999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCC--CCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhh
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDG--FPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYP 315 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g--~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~ 315 (478)
+++.+++.... .+...+++||++++ +++|+.|+++.+.+.+|.+.+....|.
T Consensus 241 a~~~~~~~~~~-------~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------------------- 294 (357)
T 1rkx_A 241 GYLLLAQKLYT-------DGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGN------------------- 294 (357)
T ss_dssp HHHHHHHHHHH-------TCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC----------------------
T ss_pred HHHHHHHhhhh-------cCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCC-------------------
Confidence 99998863110 01235789999974 689999999999999998654321110
Q ss_pred ccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCC
Q 011770 316 WLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKS 376 (478)
Q Consensus 316 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~ 376 (478)
.. +. ......+|++|++++|||+|+++++++|+++++||+++..+.
T Consensus 295 -------~~----~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 340 (357)
T 1rkx_A 295 -------AH----PH----EAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGT 340 (357)
T ss_dssp -------------------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred -------CC----Cc----CcccccCCHHHHHHHhCCCcCCcHHHHHHHHHHHHHHHhcCC
Confidence 00 00 012346899999999999999999999999999998876543
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=362.77 Aligned_cols=307 Identities=20% Similarity=0.212 Sum_probs=240.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHhcC--cCEEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAARG--VDCVFH 84 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViH 84 (478)
||+|||||||||||++|+++|+++|++ |++++|....... ......+++++.+|++|.+++.+++++ +|+|||
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGID-LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 79 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCE-EEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEE
Confidence 468999999999999999999999998 9999985421110 011124589999999999999999988 999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEeccceeeCCcccc----------------CCCCCCC
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTYNVVFGGKEIV----------------NGNESLP 147 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~~v~~g~~~~~----------------~~~E~~p 147 (478)
+|+......+..++...+++|+.||.+++++|++.+++ ++||+||.++| +..... +.+|+.+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~-g~~~~~~~~e~~~~~~~~~~~~~~~e~~~ 158 (347)
T 1orr_A 80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVY-GDLEQYKYNETETRYTCVDKPNGYDESTQ 158 (347)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGG-TTCTTSCEEECSSCEEETTCTTCBCTTSC
T ss_pred CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHh-CCCCcCCcccccccccccccccCccccCC
Confidence 99975443344567788999999999999999999986 99999999984 433221 2456555
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-----CcHHHHHHHHHcCC-----CC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-----RHLPRIVSLAKLGL-----VP 217 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-----~~~~~~i~~~~~g~-----~~ 217 (478)
..|. +.|+.||..+|++++.+.. ..+++++++||+.||||+.. ..++.++..+..+. ++
T Consensus 159 ~~~~----~~Y~~sK~~~E~~~~~~~~-------~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (347)
T 1orr_A 159 LDFH----SPYGCSKGAADQYMLDYAR-------IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPF 227 (347)
T ss_dssp CCCC----HHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCC----CchHHHHHHHHHHHHHHHH-------HhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCe
Confidence 5543 7899999999999988753 35899999999999999864 24666666665554 56
Q ss_pred eeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC--CCCHHHHHHHHHHhcCCCCCcccCC
Q 011770 218 FKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF--PINTFEFIGPLLKTLDYDLPKSWLA 295 (478)
Q Consensus 218 ~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~--~~s~~e~~~~i~~~lg~~~~~~~lp 295 (478)
.++|++++.++|+|++|+|++++.+++. .....|++||+++|+ ++|+.|+++.+.+.+|.+.+....|
T Consensus 228 ~~~g~g~~~~~~i~v~Dva~a~~~~~~~----------~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~ 297 (347)
T 1orr_A 228 TISGNGKQVRDVLHAEDMISLYFTALAN----------VSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP 297 (347)
T ss_dssp EEESSSCCEEECEEHHHHHHHHHHHHHT----------HHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC
T ss_pred EEecCCcceEeeEEHHHHHHHHHHHHhc----------cccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCC
Confidence 6789999999999999999999998862 113467899999987 4999999999999999876544333
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 296 VPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
. .+. ......+|++|++++|||+|+++++++|+++++|++++...
T Consensus 298 ~---------------------------~~~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~~ 342 (347)
T 1orr_A 298 V---------------------------RES--------DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILEH 342 (347)
T ss_dssp C---------------------------CSS--------CCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC---
T ss_pred C---------------------------CCC--------CcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHh
Confidence 1 000 01234579999999999999999999999999999987643
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=361.66 Aligned_cols=301 Identities=16% Similarity=0.142 Sum_probs=235.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa 87 (478)
++|+|||||||||||++|+++|+++|++ |++++|+. .+|++|.+++.++++ ++|+|||+|+
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-v~~~~r~~----------------~~D~~d~~~~~~~~~~~~~d~vih~a~ 64 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDV-ELVLRTRD----------------ELNLLDSRAVHDFFASERIDQVYLAAA 64 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTE-EEECCCTT----------------TCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCe-EEEEecCc----------------cCCccCHHHHHHHHHhcCCCEEEEcCe
Confidence 3578999999999999999999999998 99987652 279999999999998 9999999999
Q ss_pred CCCC-chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc-CCchHhhHHHH
Q 011770 88 YGMS-GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH-VDSYGRSKSVA 165 (478)
Q Consensus 88 ~~~~-~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~-~~~Y~~sK~~a 165 (478)
.... .....++...+++|+.+|.+++++|++.+++++||+||.++ |+.....+.+|+.+......+ .+.|+.+|..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~v-yg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~ 143 (321)
T 1e6u_A 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI-YPKLAKQPMAESELLQGTLEPTNEPYAIAKIAG 143 (321)
T ss_dssp CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGG-SCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHH
T ss_pred ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHH-cCCCCCCCcCccccccCCCCCCCCccHHHHHHH
Confidence 7532 22345667889999999999999999999999999999998 555555667787643211111 25899999999
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHc----C-CCCeeeCCCCccccceeHHH
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKL----G-LVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~----g-~~~~~~g~g~~~~~~v~V~D 234 (478)
|++++.+.. ..+++++++||+.||||++. .+++.++..+.. | ..+.++|++++.++|+|++|
T Consensus 144 E~~~~~~~~-------~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~D 216 (321)
T 1e6u_A 144 IKLCESYNR-------QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDD 216 (321)
T ss_dssp HHHHHHHHH-------HHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHH
T ss_pred HHHHHHHHH-------HhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHH
Confidence 999988753 35899999999999999875 466777776654 4 45556899999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhh
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLY 314 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~ 314 (478)
+|++++.+++......+ ..+...+++||+++++++|+.|+++.+.+.+|.+.+....|
T Consensus 217 va~~~~~~~~~~~~~~~---~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------------------- 274 (321)
T 1e6u_A 217 MAAASIHVMELAHEVWL---ENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA------------------- 274 (321)
T ss_dssp HHHHHHHHHHSCHHHHH---HTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEET-------------------
T ss_pred HHHHHHHHHhCcccccc---cccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCC-------------------
Confidence 99999999873110000 00011368999999999999999999999999875433222
Q ss_pred hccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 315 PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
..|.. .....+|++|+++ |||+|+++++++|+++++||+++..
T Consensus 275 --------~~~~~--------~~~~~~d~~k~~~-lG~~p~~~~~~~l~~~~~~~~~~~~ 317 (321)
T 1e6u_A 275 --------SKPDG--------TPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLENQD 317 (321)
T ss_dssp --------TSCCC--------CSBCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTC-
T ss_pred --------CCCCC--------cccccCCHHHHHh-cCCccCCcHHHHHHHHHHHHHHHHH
Confidence 11110 1234689999999 9999999999999999999987754
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=367.06 Aligned_cols=310 Identities=18% Similarity=0.163 Sum_probs=241.0
Q ss_pred CeEEEEcCCChhHHHHHHHHH-HcCCceEEEEecCCCCc--------ccccc-------c---CCC---eEEEEecCCCH
Q 011770 12 KTFLVTGGLGHVGSALCLELV-RRGAYQVRAFDLRTNSP--------WSHLL-------I---NHG---VHCIQGDVVSK 69 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~-~~G~~~V~~l~r~~~~~--------~~~~~-------~---~~~---v~~v~gDl~d~ 69 (478)
|+|||||||||||++|+++|+ ++|++ |++++|..... ..... . ..+ ++++.+|++|.
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNHS-VVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCE-EEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCCE-EEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 589999999999999999999 99998 99999875431 11110 0 124 89999999999
Q ss_pred HHHHHHhc--C-cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCcc-------c
Q 011770 70 IDVEKAAR--G-VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKE-------I 139 (478)
Q Consensus 70 ~~l~~~l~--~-~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~-------~ 139 (478)
+++.++++ + +|+|||+|+......+..++...+++|+.||.+++++|++.++++|||+||.++| +... .
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~-g~~~~~~~~~~~ 160 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIF-GNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGT-BSCCC-----CC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHh-CCCCcccccccc
Confidence 99999997 6 9999999997654434456778999999999999999999999999999999884 4433 4
Q ss_pred cCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC-----------CCcHHHHH
Q 011770 140 VNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE-----------ERHLPRIV 208 (478)
Q Consensus 140 ~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~-----------~~~~~~~i 208 (478)
.+.+|+.+..|. ++|+.||.++|++++.+.. ..+++++++||++||||+. ..+++.++
T Consensus 161 ~~~~E~~~~~p~----~~Y~~sK~~~e~~~~~~~~-------~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~ 229 (397)
T 1gy8_A 161 EPIDINAKKSPE----SPYGESKLIAERMIRDCAE-------AYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIIL 229 (397)
T ss_dssp CCBCTTSCCBCS----SHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHH
T ss_pred cCcCccCCCCCC----CchHHHHHHHHHHHHHHHH-------HHCCcEEEEeccceeCCCccccccccccchhHHHHHHH
Confidence 677888876654 7899999999999988764 3589999999999999974 23445444
Q ss_pred ----HHHHcCC------------CCeeeC------CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCC---ce
Q 011770 209 ----SLAKLGL------------VPFKIG------EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASG---QP 263 (478)
Q Consensus 209 ----~~~~~g~------------~~~~~g------~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g---~~ 263 (478)
..+..+. .+.++| ++++.++||||+|+|++++.+++..... .+...+ ++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~------~~~~~~~~~~~ 303 (397)
T 1gy8_A 230 GRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKL------GPNDKSKYFSV 303 (397)
T ss_dssp HHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTC------CTTTGGGSEEE
T ss_pred HHHHHHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhccccc------ccccccCCCcE
Confidence 2333443 345666 7889999999999999999998731110 000013 79
Q ss_pred EEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEech
Q 011770 264 YFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSL 343 (478)
Q Consensus 264 yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~ 343 (478)
||+++++++++.|+++.+.+.+|.+.+....|.. . .. .....+|+
T Consensus 304 ~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------------------~----~~-----------~~~~~~d~ 348 (397)
T 1gy8_A 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRR--------------------E----GD-----------PAYLVAAS 348 (397)
T ss_dssp EEESCSCCEEHHHHHHHHHHHHCCCCCEEEECCC--------------------T----TC-----------CSEECBCC
T ss_pred EEeCCCCcccHHHHHHHHHHHhCCCCCeeeCCCC--------------------C----Cc-----------ccccccCH
Confidence 9999999999999999999999987654332210 0 01 12346899
Q ss_pred HhHHHhCCCCcCC-ChHHHHHHHHHHHHHccCC
Q 011770 344 LKAKDELCYVPIV-SPREGMAATISYWQDRKRK 375 (478)
Q Consensus 344 ~ka~~~LG~~p~~-~~~e~l~~~i~~~~~~~~~ 375 (478)
+|++++|||+|++ +++++|+++++|++++..+
T Consensus 349 ~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~~ 381 (397)
T 1gy8_A 349 DKAREVLGWKPKYDTLEAIMETSWKFQRTHPNG 381 (397)
T ss_dssp HHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999998 9999999999999987554
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-44 Score=356.35 Aligned_cols=309 Identities=21% Similarity=0.231 Sum_probs=237.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhc--CcCEEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAAR--GVDCVFH 84 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViH 84 (478)
|+|||||||||||++|+++|+++|++ |++++|......... ....+++++.+|++|.+++.++++ ++|+|||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih 79 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHD-VIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEE
Confidence 47999999999999999999999998 999987543211100 012468899999999999999887 5999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~ 164 (478)
+||.........++...+++|+.||.+++++|++.+++++||+||.++ |+.....+.+|+.+..|. .++|+.||.+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~-~g~~~~~~~~e~~~~~~~---~~~Y~~sK~~ 155 (338)
T 1udb_A 80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATV-YGDNPKIPYVESFPTGTP---QSPYGKSKLM 155 (338)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGG-GCSCCSSSBCTTSCCCCC---SSHHHHHHHH
T ss_pred CCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHH-hCCCCCCCcCcccCCCCC---CChHHHHHHH
Confidence 999754433445567789999999999999999999999999999998 555455567887776442 3789999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC------------CCcHHHHHHHHH-cCCCCeeeC------CCCc
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE------------ERHLPRIVSLAK-LGLVPFKIG------EPSV 225 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~------------~~~~~~~i~~~~-~g~~~~~~g------~g~~ 225 (478)
+|++++.+... ..+++++++||+++|||+. ...++.+.+... .+..+.++| +|++
T Consensus 156 ~e~~~~~~~~~------~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 229 (338)
T 1udb_A 156 VEQILTDLQKA------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229 (338)
T ss_dssp HHHHHHHHHHH------STTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHh------cCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCce
Confidence 99999887531 2379999999999999842 123455555444 344444444 5678
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHH
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKV 305 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~ 305 (478)
.++|+||+|+|++++.+++.... ...+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 230 ~~~~i~v~Dva~a~~~~l~~~~~---------~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-------- 292 (338)
T 1udb_A 230 VRDYIHVMDLADGHVVAMEKLAN---------KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR-------- 292 (338)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTT---------CCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCC--------
T ss_pred eeeeEEHHHHHHHHHHHHhhhhc---------cCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCC--------
Confidence 89999999999999999873110 1223799999999999999999999999987554332210
Q ss_pred HHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 306 FSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
. ..+ ....+|++|++++|||+|+++++++++++++|++++...
T Consensus 293 ------------~----~~~-----------~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~~ 335 (338)
T 1udb_A 293 ------------E----GDL-----------PAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQG 335 (338)
T ss_dssp ------------T----TCC-----------SBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ------------C----Cch-----------hhhhcCHHHHHHHcCCCcCCCHHHHHHHHHHHHHhcccc
Confidence 0 010 123579999999999999999999999999999987544
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=358.18 Aligned_cols=299 Identities=24% Similarity=0.280 Sum_probs=239.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
.+++|+|||||||||||++|+++|+++|++ |++++|........ .....+++++.+|+.|. ++.++|+|||
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~vih 97 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHE-VTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP-----LYIEVDQIYH 97 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSC-----CCCCCSEEEE
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCCCE-EEEEeCCCccchhhhhhhccCCceEEEeCccCCh-----hhcCCCEEEE
Confidence 456789999999999999999999999998 99999875432111 11235789999999885 3678999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCC-----CCCCCCccCCchH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESL-----PYFPIDEHVDSYG 159 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~-----p~~p~~~~~~~Y~ 159 (478)
+|+.........++...+++|+.||.+++++|++.++ ++||+||.++ |+.....+.+|+. |..| .+.|+
T Consensus 98 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v-~g~~~~~~~~E~~~~~~~~~~~----~~~Y~ 171 (343)
T 2b69_A 98 LASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEV-YGDPEVHPQSEDYWGHVNPIGP----RACYD 171 (343)
T ss_dssp CCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGG-GBSCSSSSBCTTCCCBCCSSST----THHHH
T ss_pred CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHH-hCCCCCCCCcccccccCCCCCC----CCchH
Confidence 9997544333456677889999999999999999997 9999999998 5554445667763 3333 37899
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC----CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHH
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE----RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNL 235 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~----~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dv 235 (478)
.||..+|++++.+.. ..+++++++||+.||||+.. ..++.++..+..|..+.++|++++.++|+|++|+
T Consensus 172 ~sK~~~E~~~~~~~~-------~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 244 (343)
T 2b69_A 172 EGKRVAETMCYAYMK-------QEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDL 244 (343)
T ss_dssp HHHHHHHHHHHHHHH-------HHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHH
T ss_pred HHHHHHHHHHHHHHH-------HhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHH
Confidence 999999999988753 46899999999999999853 4567777777888877788999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhh
Q 011770 236 VLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYP 315 (478)
Q Consensus 236 a~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~ 315 (478)
|++++.+++. ..+++||+++++++|+.|+++.+.+.+|.+.+...+|...
T Consensus 245 a~a~~~~~~~-------------~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~----------------- 294 (343)
T 2b69_A 245 VNGLVALMNS-------------NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ----------------- 294 (343)
T ss_dssp HHHHHHHHTS-------------SCCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCT-----------------
T ss_pred HHHHHHHHhc-------------CCCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCC-----------------
Confidence 9999988862 1367999999999999999999999999876554443210
Q ss_pred ccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 316 WLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 316 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..+ ....+|++|++++|||+|+++++++|+++++|++++.
T Consensus 295 -------~~~-----------~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 334 (343)
T 2b69_A 295 -------DDP-----------QKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 334 (343)
T ss_dssp -------TCC-----------CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred -------CCC-----------ceecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 111 1235799999999999999999999999999998754
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=361.41 Aligned_cols=309 Identities=21% Similarity=0.268 Sum_probs=245.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCc-cccc---ccCCCeEEEEecCCCHHHHHHHhc--CcCEEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSP-WSHL---LINHGVHCIQGDVVSKIDVEKAAR--GVDCVFH 84 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~-~~~~---~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViH 84 (478)
|+|||||||||||++|+++|+++ |++ |++++|..... .... ....+++++.+|++|.+++.++++ ++|+|||
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDT-VVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCE-EEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCe-EEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEE
Confidence 47999999999999999999998 788 99999865311 1111 113578999999999999999998 8999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc--CCC-------eEEEEeccceeeCCcc--cc--------CCCCC
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF--GIQ-------RLVYVSTYNVVFGGKE--IV--------NGNES 145 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~-------r~V~~SS~~v~~g~~~--~~--------~~~E~ 145 (478)
+|+......+..++...+++|+.||.+++++|.+. +++ +|||+||.+|| |... .. +.+|+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~-g~~~~~~~~~~~~~~~~~~E~ 158 (361)
T 1kew_A 80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVY-GDLPHPDEVENSVTLPLFTET 158 (361)
T ss_dssp CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGG-CCCCCGGGSCTTSCCCCBCTT
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHh-CCCcccccccccccCCCCCCC
Confidence 99975543445567789999999999999999998 887 99999999984 4322 11 66787
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g 223 (478)
.|..|. ++|+.||..+|++++.+.. ..+++++++||+.||||++. ..++.++..+..|..+.++|++
T Consensus 159 ~~~~~~----~~Y~~sK~~~e~~~~~~~~-------~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (361)
T 1kew_A 159 TAYAPS----SPYSASKASSDHLVRAWRR-------TYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKG 227 (361)
T ss_dssp SCCCCC----SHHHHHHHHHHHHHHHHHH-------HHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTS
T ss_pred CCCCCC----CccHHHHHHHHHHHHHHHH-------HhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCC
Confidence 776654 7899999999999988753 35899999999999999874 3567778888888877778999
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHH
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLG 303 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a 303 (478)
++.++|+|++|+|++++.+++. ...|++||+++++++++.|+++.+.+.+|.+.+... |..
T Consensus 228 ~~~~~~i~v~Dva~a~~~~~~~------------~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~-p~~------ 288 (361)
T 1kew_A 228 DQIRDWLYVEDHARALHMVVTE------------GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKAT-SYR------ 288 (361)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHH------------CCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSS-CGG------
T ss_pred ceeEeeEEHHHHHHHHHHHHhC------------CCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCcccc-ccc------
Confidence 9999999999999999999873 236789999999999999999999999987644321 210
Q ss_pred HHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 304 KVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
+ ... ... ..+. ......+|++|++++|||+|+++++++|+++++|++++
T Consensus 289 ---~----~~~-~~~----~~~~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 289 ---E----QIT-YVA----DRPG--------HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp ---G----GEE-EEC----CCTT--------CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ---c----cee-ecC----CCCc--------ccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 0 000 000 0110 01234589999999999999999999999999999876
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=356.70 Aligned_cols=299 Identities=12% Similarity=0.064 Sum_probs=233.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlA 86 (478)
+|+|||||||||||++|+++|+++ |++ |++++|++... ....+++++.+|++|.+++.++++ ++|+|||+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a 76 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTEN-VIASDIRKLNT----DVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMA 76 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGG-EEEEESCCCSC----HHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCE-EEEEcCCCccc----cccCCCceEEecCCCHHHHHHHHhhcCCCEEEECC
Confidence 468999999999999999999999 898 99999876532 112367899999999999999998 899999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHH
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAE 166 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE 166 (478)
+.... ....++...+++|+.+|.+++++|++.+++++||+||.++|.+.....+.+|+.|..|. ++|+.||..+|
T Consensus 77 ~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~----~~Y~~sK~~~e 151 (312)
T 2yy7_A 77 ALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPS----TVYGISKQAGE 151 (312)
T ss_dssp CCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCC----SHHHHHHHHHH
T ss_pred ccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCC----chhHHHHHHHH
Confidence 96432 23356778899999999999999999999999999999995433333567787776664 78999999999
Q ss_pred HHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------C-cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHH
Q 011770 167 QLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------R-HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLAL 239 (478)
Q Consensus 167 ~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~-~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~ 239 (478)
++++.+.. ..+++++++||+.+|||+.. . ..+.+.+.+..+. +..++++++.++|+|++|+|+++
T Consensus 152 ~~~~~~~~-------~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 152 RWCEYYHN-------IYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKK-YECFLSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHH-------HHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSE-EEESSCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHH-------hcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCC-eEEecCCCceeeeeeHHHHHHHH
Confidence 99987753 46899999999999997532 1 2344445555554 45678889999999999999999
Q ss_pred HHHHhcccCCCCCCCCCCCC-CCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccc
Q 011770 240 ILASMGLLDDIPGQKGRPIA-SGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLN 318 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~-~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~ 318 (478)
+.+++.. .... .|++||+++ +++|+.|+++.+.+.+|. .+....|
T Consensus 224 ~~~~~~~---------~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~-~~i~~~~----------------------- 269 (312)
T 2yy7_A 224 INIMKAP---------VEKIKIHSSYNLAA-MSFTPTEIANEIKKHIPE-FTITYEP----------------------- 269 (312)
T ss_dssp HHHHHSC---------GGGCCCSSCEECCS-EEECHHHHHHHHHTTCTT-CEEEECC-----------------------
T ss_pred HHHHhCc---------ccccccCceEEeCC-CccCHHHHHHHHHHHCCC-CceEecc-----------------------
Confidence 9998731 1011 258999996 899999999999999883 1111111
Q ss_pred cccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHH
Q 011770 319 RWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQ 370 (478)
Q Consensus 319 ~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~ 370 (478)
. .+.... ......+|++|++++|||+|+++++++|+++++||+
T Consensus 270 -------~-~~~~~~-~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 270 -------D-FRQKIA-DSWPASIDDSQAREDWDWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp -------C-THHHHH-TTSCSSBCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_pred -------C-cccccc-ccccccCCHHHHHHHcCCCCCCCHHHHHHHHHHHhC
Confidence 1 011111 011235799999999999999999999999999985
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=366.42 Aligned_cols=312 Identities=19% Similarity=0.179 Sum_probs=238.6
Q ss_pred CcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----------------c-----cccCCCeEEE
Q 011770 4 SENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----------------H-----LLINHGVHCI 62 (478)
Q Consensus 4 ~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----------------~-----~~~~~~v~~v 62 (478)
+-+.-..+++|||||||||||++|+++|+++|++ |++++|....... . .....+++++
T Consensus 4 ~~~~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 82 (404)
T 1i24_A 4 SHHHHHHGSRVMVIGGDGYCGWATALHLSKKNYE-VCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELY 82 (404)
T ss_dssp --------CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEE
T ss_pred ccccccCCCeEEEeCCCcHHHHHHHHHHHhCCCe-EEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEE
Confidence 3344457889999999999999999999999998 9999875321100 0 0113578999
Q ss_pred EecCCCHHHHHHHhcC--cCEEEEcccCCCCchhhhch---hhhhHhhhHHHHHHHHHHHHcCC-CeEEEEeccceeeCC
Q 011770 63 QGDVVSKIDVEKAARG--VDCVFHVASYGMSGKEMLQF---GRVDEVNINGTCHVIEACLEFGI-QRLVYVSTYNVVFGG 136 (478)
Q Consensus 63 ~gDl~d~~~l~~~l~~--~D~ViHlAa~~~~~~~~~~~---~~~~~vNv~gt~nll~aa~~~~v-~r~V~~SS~~v~~g~ 136 (478)
.+|++|.+++.+++++ +|+|||+||.........++ ...+++|+.||.+++++|++.++ +++||+||.++| +.
T Consensus 83 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vy-g~ 161 (404)
T 1i24_A 83 VGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEY-GT 161 (404)
T ss_dssp ESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGG-CC
T ss_pred ECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHh-CC
Confidence 9999999999999987 99999999975433222233 34779999999999999999997 599999999984 43
Q ss_pred ccccCCCCC--------------CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-
Q 011770 137 KEIVNGNES--------------LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE- 201 (478)
Q Consensus 137 ~~~~~~~E~--------------~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~- 201 (478)
.. .+.+|+ .+..| .++|+.||.++|++++.+.. ..+++++++||+.||||++.
T Consensus 162 ~~-~~~~E~~~~~~~~~~~~~~~~~~~~----~~~Y~~sK~~~e~~~~~~~~-------~~gi~~~ivrp~~v~Gp~~~~ 229 (404)
T 1i24_A 162 PN-IDIEEGYITITHNGRTDTLPYPKQA----SSFYHLSKVHDSHNIAFTCK-------AWGIRATDLNQGVVYGVKTDE 229 (404)
T ss_dssp CS-SCBCSSEEEEEETTEEEEEECCCCC----CSHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECEEECSCCTT
T ss_pred CC-CCCCccccccccccccccccCCCCC----CChhHHHHHHHHHHHHHHHH-------hcCCeEEEEecceeeCCCCCc
Confidence 32 345554 23333 37899999999999987753 35899999999999999863
Q ss_pred ------------------CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCC--
Q 011770 202 ------------------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASG-- 261 (478)
Q Consensus 202 ------------------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g-- 261 (478)
..++.++..+..|..+.++|++++.++|+||+|+|++++.+++. +...|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~-----------~~~~g~~ 298 (404)
T 1i24_A 230 TEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIAN-----------PAKAGEF 298 (404)
T ss_dssp GGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHS-----------CCCTTCE
T ss_pred cccccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhC-----------cccCCCc
Confidence 45788888888898877889999999999999999999999873 22345
Q ss_pred ceEEecCCCCCCHHHHHHHHHHh---cCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcce
Q 011770 262 QPYFVSDGFPINTFEFIGPLLKT---LDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVT 338 (478)
Q Consensus 262 ~~yni~~g~~~s~~e~~~~i~~~---lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 338 (478)
++||+++ +++|+.|+++.+.+. +|.+.+...+|.+. . . .....
T Consensus 299 ~~yni~~-~~~s~~e~~~~i~~~~~~~g~~~~~~~~p~~~------------------------~----~-----~~~~~ 344 (404)
T 1i24_A 299 RVFNQFT-EQFSVNELASLVTKAGSKLGLDVKKMTVPNPR------------------------V----E-----AEEHY 344 (404)
T ss_dssp EEEEECS-EEEEHHHHHHHHHHHHHTTTCCCCEEEECCSS------------------------C----S-----CSSCC
T ss_pred eEEEECC-CCCcHHHHHHHHHHHHHhhCCCccccccCccc------------------------C----c-----cccce
Confidence 7999998 899999999999998 78765544333210 0 0 00112
Q ss_pred eEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 339 HYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 339 ~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
..+|++|++ +|||+|+++++++++++++|++.....
T Consensus 345 ~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~~~ 380 (404)
T 1i24_A 345 YNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKDR 380 (404)
T ss_dssp CCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGGG
T ss_pred EecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhhhc
Confidence 347999998 699999999999999999999876654
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=350.75 Aligned_cols=279 Identities=20% Similarity=0.203 Sum_probs=236.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~ 89 (478)
|+|||||||||||++|+++|+++|++ |++++|. ++|++|.+++.++++ ++|+|||+|+..
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~-----------------~~D~~d~~~~~~~~~~~~~d~vi~~a~~~ 67 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYD-IYPFDKK-----------------LLDITNISQVQQVVQEIRPHIIIHCAAYT 67 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEE-EEEECTT-----------------TSCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCE-EEEeccc-----------------ccCCCCHHHHHHHHHhcCCCEEEECCccc
Confidence 48999999999999999999999998 9999882 389999999999998 799999999986
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
....+..++...+++|+.|+.+++++|++.++ |+||+||.++ |++....+.+|+.|..|. ++|+.+|..+|+++
T Consensus 68 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~v-y~~~~~~~~~E~~~~~p~----~~Y~~sK~~~E~~~ 141 (287)
T 3sc6_A 68 KVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYV-FQGDRPEGYDEFHNPAPI----NIYGASKYAGEQFV 141 (287)
T ss_dssp CHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGG-SCCCCSSCBCTTSCCCCC----SHHHHHHHHHHHHH
T ss_pred ChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhh-cCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHH
Confidence 65555567888999999999999999999998 7999999998 566666788999888775 79999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
+.+.. +++++||+.+|||++..+++.++..+..+..+.++|+ +.++|+|++|+|++++.+++.
T Consensus 142 ~~~~~-----------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~---- 204 (287)
T 3sc6_A 142 KELHN-----------KYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIHT---- 204 (287)
T ss_dssp HHHCS-----------SEEEEEECSEECSSSCCHHHHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHHTS----
T ss_pred HHhCC-----------CcEEEeeeeecCCCCCcHHHHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHHhC----
Confidence 88742 5799999999999988888888888888887777765 889999999999999999873
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
+. +++||+++++++++.|+++.+.+.+|.+.+...+|.... +... ..|
T Consensus 205 -------~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---------------~~~~----~~~---- 252 (287)
T 3sc6_A 205 -------SL--YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEF---------------GAAA----ARP---- 252 (287)
T ss_dssp -------CC--CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHH---------------CCSS----CCC----
T ss_pred -------CC--CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhc---------------Cccc----CCC----
Confidence 22 679999999999999999999999998866555554211 0000 111
Q ss_pred HHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHH
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQD 371 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~ 371 (478)
....+|++|++ +|||+|.++++++++++++|+++
T Consensus 253 -------~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 253 -------KYSIFQHNMLR-LNGFLQMPSWEEGLERFFIETKS 286 (287)
T ss_dssp -------SBCCBCCHHHH-HTTCCCCCBHHHHHHHHHHHTC-
T ss_pred -------CcccccHHHHH-hhCCCCCccHHHHHHHHHHHHhc
Confidence 12357999999 89999999999999999999865
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=358.34 Aligned_cols=322 Identities=19% Similarity=0.168 Sum_probs=244.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc---cccc-------cCCCeEEEEecCCCHHHHHHHhcC--
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW---SHLL-------INHGVHCIQGDVVSKIDVEKAARG-- 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~---~~~~-------~~~~v~~v~gDl~d~~~l~~~l~~-- 78 (478)
||+|||||||||||++|+++|+++|++ |++++|++.... .... ...+++++.+|++|.+++.+++++
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 102 (375)
T 1t2a_A 24 RNVALITGITGQDGSYLAEFLLEKGYE-VHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 102 (375)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence 378999999999999999999999998 999998765310 0011 235689999999999999999985
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC---CeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI---QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v---~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
+|+|||+|+......+..++...+++|+.||.+++++|.+.++ ++|||+||.++ |+.....+.+|+.|..|.
T Consensus 103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~-~~~~~~~~~~E~~~~~~~---- 177 (375)
T 1t2a_A 103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSEL-YGKVQEIPQKETTPFYPR---- 177 (375)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGG-TCSCSSSSBCTTSCCCCC----
T ss_pred CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhh-hCCCCCCCCCccCCCCCC----
Confidence 6999999997554444556778899999999999999999998 89999999998 555555678888887664
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-c----HHHHHHHHHcCCC-CeeeCCCCccccc
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-H----LPRIVSLAKLGLV-PFKIGEPSVKTDW 229 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~----~~~~i~~~~~g~~-~~~~g~g~~~~~~ 229 (478)
++|+.||..+|++++.+.. ..+++++++||+++|||+... + +..++..+..|.. ...+|++++.++|
T Consensus 178 ~~Y~~sK~~~e~~~~~~~~-------~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~ 250 (375)
T 1t2a_A 178 SPYGAAKLYAYWIVVNFRE-------AYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDW 250 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECC
T ss_pred ChhHHHHHHHHHHHHHHHH-------HhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeee
Confidence 7899999999999988753 468999999999999998643 3 3445555566653 4567999999999
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcc--cCChHHHHHHHHHHH
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKS--WLAVPHALFLGKVFS 307 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~--~lp~~~~~~~a~~~~ 307 (478)
+|++|+|++++.+++. + .+++||+++++++|+.|+++.+.+.+|.+.+.. .+|.+++..
T Consensus 251 i~v~Dva~a~~~~~~~-----------~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~------ 311 (375)
T 1t2a_A 251 GHAKDYVEAMWLMLQN-----------D--EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCK------ 311 (375)
T ss_dssp EEHHHHHHHHHHHHHS-----------S--SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEET------
T ss_pred EEHHHHHHHHHHHHhc-----------C--CCceEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccccc------
Confidence 9999999999999873 1 247999999999999999999999999864321 133221100
Q ss_pred HHHHhhhh-ccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 308 FFYSVLYP-WLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 308 ~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.++. ... . ..+...+.. .....+|++|++++|||+|+++++++|+++++|+++....
T Consensus 312 ----~~~~~~~~--~-~~~~~~~~~----~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 369 (375)
T 1t2a_A 312 ----ETGKVHVT--V-DLKYYRPTE----VDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 369 (375)
T ss_dssp ----TTCCEEEE--E-CGGGSCSSC----CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ----ccccceee--c-CcccCCccc----chhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhcc
Confidence 0000 000 0 000000110 1223579999999999999999999999999999876543
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=355.81 Aligned_cols=298 Identities=16% Similarity=0.184 Sum_probs=238.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-----CcCEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-----GVDCV 82 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-----~~D~V 82 (478)
+++|+|||||||||||++|+++|+++| ++ |++++|.+.... .....++. +.+|++|.+.++++++ ++|+|
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~--~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~V 119 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITD-ILVVDNLKDGTK--FVNLVDLN-IADYMDKEDFLIQIMAGEEFGDVEAI 119 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCC-EEEEECCSSGGG--GGGTTTSC-CSEEEEHHHHHHHHHTTCCCSSCCEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcE-EEEEecCCCcch--hhcccCce-EeeecCcHHHHHHHHhhcccCCCCEE
Confidence 456899999999999999999999999 88 999988765321 11112344 7799999999999987 59999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhH
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
||+|+.... ...++...+++|+.||.+++++|++.++ ++||+||.++ |+.....+.+|+.+..|. ++|+.+|
T Consensus 120 ih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v-~g~~~~~~~~E~~~~~p~----~~Y~~sK 191 (357)
T 2x6t_A 120 FHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAAT-YGGRTSDFIESREYEKPL----NVFGYSK 191 (357)
T ss_dssp EECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGG-GCSCSSCCCSSGGGCCCS----SHHHHHH
T ss_pred EECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHH-hCCCCCCCcCCcCCCCCC----ChhHHHH
Confidence 999996543 3345678899999999999999999999 9999999998 565555578888877764 7899999
Q ss_pred HHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCc-cccceeHHHH
Q 011770 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSV-KTDWIYVDNL 235 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~-~~~~v~V~Dv 235 (478)
..+|++++.+.. ..+++++++||+.||||++. ..++.++..+..|..+.++|++++ .++|+|++|+
T Consensus 192 ~~~E~~~~~~~~-------~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 264 (357)
T 2x6t_A 192 FLFDEYVRQILP-------EANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDV 264 (357)
T ss_dssp HHHHHHHHHHGG-------GCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHH
T ss_pred HHHHHHHHHHHH-------HcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHH
Confidence 999999998864 46899999999999999875 467778888888888778898888 9999999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCC-CCcccCChHHHHHHHHHHHHHHHhhh
Q 011770 236 VLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYD-LPKSWLAVPHALFLGKVFSFFYSVLY 314 (478)
Q Consensus 236 a~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~-~~~~~lp~~~~~~~a~~~~~~~~~~~ 314 (478)
|++++.+++. +. +++||+++++++++.|+++.+.+.+|.+ .+....|.+.
T Consensus 265 a~ai~~~~~~-----------~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---------------- 315 (357)
T 2x6t_A 265 ADVNLWFLEN-----------GV--SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL---------------- 315 (357)
T ss_dssp HHHHHHHHHH-----------CC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGG----------------
T ss_pred HHHHHHHHhc-----------CC--CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCccc----------------
Confidence 9999999873 12 7899999999999999999999999987 2222222110
Q ss_pred hccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCC-CcCCChHHHHHHHHHHHHHc
Q 011770 315 PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY-VPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~-~p~~~~~e~l~~~i~~~~~~ 372 (478)
. ........+|++|+++ ||| .|.++++++|+++++||+++
T Consensus 316 --------~---------~~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 316 --------K---------GRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp --------T---------TSCCSBCCCCCHHHHH-TTCCCCCCCHHHHHHHHHHHHC--
T ss_pred --------c---------cccccccccCHHHHHH-cCCCCCCCCHHHHHHHHHHHHhhc
Confidence 0 0011233578999987 999 89999999999999999753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=348.16 Aligned_cols=280 Identities=18% Similarity=0.186 Sum_probs=225.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC-cCEEEEcccC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG-VDCVFHVASY 88 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~-~D~ViHlAa~ 88 (478)
+||+||||| +||||++|+++|+++|++ |++++|+.+. ...+++++.+|++|.+++.+++++ +|+|||+|+.
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~-V~~~~r~~~~------~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~ 73 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHE-VTGLRRSAQP------MPAGVQTLIADVTRPDTLASIVHLRPEILVYCVAA 73 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCC-EEEEECTTSC------CCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHH
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCE-EEEEeCCccc------cccCCceEEccCCChHHHHHhhcCCCCEEEEeCCC
Confidence 457899999 599999999999999999 9999987652 246899999999999999999987 9999999985
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHH
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~ 168 (478)
...++...+++|+.++.+++++|++.++++|||+||.+| |+.....+.+|+.|..|. +.|+.+|.++|++
T Consensus 74 -----~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~v-yg~~~~~~~~E~~~~~p~----~~Y~~sK~~~E~~ 143 (286)
T 3gpi_A 74 -----SEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGV-YGQEVEEWLDEDTPPIAK----DFSGKRMLEAEAL 143 (286)
T ss_dssp -----HHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGG-CCCCCSSEECTTSCCCCC----SHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEE-EcCCCCCCCCCCCCCCCC----ChhhHHHHHHHHH
Confidence 234567788999999999999999999999999999998 566666678999888775 8899999999998
Q ss_pred HHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccC
Q 011770 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLD 248 (478)
Q Consensus 169 v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~ 248 (478)
++ . ++++++||+.+|||++..+ +..+.. . ...+++++.++|+|++|+|++++.+++...
T Consensus 144 -~~-----------~-~~~~ilR~~~v~G~~~~~~----~~~~~~-~--~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~- 202 (286)
T 3gpi_A 144 -LA-----------A-YSSTILRFSGIYGPGRLRM----IRQAQT-P--EQWPARNAWTNRIHRDDGAAFIAYLIQQRS- 202 (286)
T ss_dssp -GG-----------G-SSEEEEEECEEEBTTBCHH----HHHTTC-G--GGSCSSBCEECEEEHHHHHHHHHHHHHHHT-
T ss_pred -Hh-----------c-CCeEEEecccccCCCchhH----HHHHHh-c--ccCCCcCceeEEEEHHHHHHHHHHHHhhhc-
Confidence 53 2 6899999999999987633 333333 2 234788899999999999999999988411
Q ss_pred CCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCc
Q 011770 249 DIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLIL 328 (478)
Q Consensus 249 ~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~ 328 (478)
....+++||+++++++|+.|+++.+.+.+|.+.+.... +
T Consensus 203 --------~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~------------------------------~--- 241 (286)
T 3gpi_A 203 --------HAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGAT------------------------------P--- 241 (286)
T ss_dssp --------TSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCC------------------------------C---
T ss_pred --------cCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCC------------------------------c---
Confidence 03467899999999999999999999999987554221 1
Q ss_pred HHHhhhhcceeEechHhHHHhCCCCcCC-ChHHHHHHHHHHHHHccCC
Q 011770 329 PAEVYKVGVTHYFSLLKAKDELCYVPIV-SPREGMAATISYWQDRKRK 375 (478)
Q Consensus 329 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~~~e~l~~~i~~~~~~~~~ 375 (478)
....+..+|++|++ +|||+|++ +++++|+++++|++.+.+.
T Consensus 242 -----~~~~~~~~d~~k~~-~lG~~p~~~~l~e~l~~~~~~~~~~~~~ 283 (286)
T 3gpi_A 242 -----PVQGNKKLSNARLL-ASGYQLIYPDYVSGYGALLAAMREGHHH 283 (286)
T ss_dssp -----CBCSSCEECCHHHH-HTTCCCSSCSHHHHHHHHHHHHTC----
T ss_pred -----ccCCCeEeeHHHHH-HcCCCCcCCcHHHHHHHHHHHHhccccc
Confidence 01123468999998 89999998 7999999999999766543
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=353.37 Aligned_cols=325 Identities=21% Similarity=0.217 Sum_probs=244.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc----ccCCCeEEEEecCCCHHHHHHHhcC--cCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL----LINHGVHCIQGDVVSKIDVEKAARG--VDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~----~~~~~v~~v~gDl~d~~~l~~~l~~--~D~Vi 83 (478)
++|+|||||||||||++|+++|+++|++ |++++|++....... ....+++++.+|++|.+++.+++++ +|+||
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 80 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYE-VYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY 80 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999998 999998765321100 1124689999999999999999985 69999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC-CeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhH
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI-QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v-~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
|+|+......+..++...+++|+.||.+++++|.+.++ +++||+||.++ ||.....+.+|+.+..|. ++|+.||
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v-yg~~~~~~~~e~~~~~~~----~~Y~~sK 155 (345)
T 2z1m_A 81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEM-FGKVQEIPQTEKTPFYPR----SPYAVAK 155 (345)
T ss_dssp ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGG-GCSCSSSSBCTTSCCCCC----SHHHHHH
T ss_pred ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhh-cCCCCCCCCCccCCCCCC----ChhHHHH
Confidence 99997654434556778899999999999999999997 89999999998 565555677888877664 7899999
Q ss_pred HHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cH----HHHHHHHHcCCC-CeeeCCCCccccceeHHHHH
Q 011770 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HL----PRIVSLAKLGLV-PFKIGEPSVKTDWIYVDNLV 236 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~----~~~i~~~~~g~~-~~~~g~g~~~~~~v~V~Dva 236 (478)
..+|++++.+.. ..+++++++|++++|||+... .+ ..++..+..|.. ...+|++++.++|+|++|+|
T Consensus 156 ~~~e~~~~~~~~-------~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva 228 (345)
T 2z1m_A 156 LFGHWITVNYRE-------AYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYV 228 (345)
T ss_dssp HHHHHHHHHHHH-------HHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHH
T ss_pred HHHHHHHHHHHH-------HhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHH
Confidence 999999988753 457899999999999998643 22 334445556653 34678888999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcc--cCChHHHHHHHHHHHHHHHhhh
Q 011770 237 LALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKS--WLAVPHALFLGKVFSFFYSVLY 314 (478)
Q Consensus 237 ~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~--~lp~~~~~~~a~~~~~~~~~~~ 314 (478)
++++.+++. + .+++||+++++++++.|+++.+.+.+|.+.+.. .+|.+++. +. +..
T Consensus 229 ~a~~~~~~~-----------~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~--~~-------~~~ 286 (345)
T 2z1m_A 229 EAMWLMMQQ-----------P--EPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGID--RN-------TGK 286 (345)
T ss_dssp HHHHHHHTS-----------S--SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEE--TT-------TCC
T ss_pred HHHHHHHhC-----------C--CCceEEEeCCCCccHHHHHHHHHHHhCCCcccccccccccccc--cc-------ccc
Confidence 999999872 1 246999999999999999999999999874422 13322110 00 000
Q ss_pred hccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCCC
Q 011770 315 PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRKS 376 (478)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~ 376 (478)
.... . ..+...+.. .....+|++|++++|||+|+++++++++++++|++++...+
T Consensus 287 ~~~~--~-~~~~~~~~~----~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~ 341 (345)
T 2z1m_A 287 VIVE--V-SEEFFRPAE----VDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRDR 341 (345)
T ss_dssp EEEE--E-CGGGSCSSC----CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHC-
T ss_pred cccc--c-CcccCCCCC----cceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHhccc
Confidence 0000 0 000000100 12235799999999999999999999999999998876543
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=357.45 Aligned_cols=331 Identities=19% Similarity=0.203 Sum_probs=241.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc-c--ccc------cCCCeEEEEecCCCHHHHHHHhcC--c
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW-S--HLL------INHGVHCIQGDVVSKIDVEKAARG--V 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~-~--~~~------~~~~v~~v~gDl~d~~~l~~~l~~--~ 79 (478)
||+|||||||||||++++++|+++|++ |++++|+..... . ... ...+++++.+|++|.+++.+++++ +
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYE-VHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999999998 999998754210 0 000 125788999999999999999985 7
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC---CeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI---QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v---~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
|+|||+|+......+..++...+++|+.||.+++++|++.++ +++||+||.++ |+.....+.+|+.+..|. +
T Consensus 80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v-~g~~~~~~~~E~~~~~~~----~ 154 (372)
T 1db3_A 80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSEL-YGLVQEIPQKETTPFYPR----S 154 (372)
T ss_dssp SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGG-GTTCCSSSBCTTSCCCCC----S
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhh-hCCCCCCCCCccCCCCCC----C
Confidence 999999997554444456677889999999999999999998 79999999998 555555577888887764 7
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-c----HHHHHHHHHcCCC-CeeeCCCCccccce
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-H----LPRIVSLAKLGLV-PFKIGEPSVKTDWI 230 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~----~~~~i~~~~~g~~-~~~~g~g~~~~~~v 230 (478)
+|+.||..+|++++.+.. ..+++++++|++++|||+... + +..++..+..|.. ...+|++++.++|+
T Consensus 155 ~Y~~sK~~~e~~~~~~~~-------~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i 227 (372)
T 1db3_A 155 PYAVAKLYAYWITVNYRE-------SYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWG 227 (372)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCE
T ss_pred hHHHHHHHHHHHHHHHHH-------HhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeee
Confidence 899999999999988763 468999999999999998643 2 3455666677764 45679999999999
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCccc--CChH-HHHHHHHHHH
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSW--LAVP-HALFLGKVFS 307 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~--lp~~-~~~~~a~~~~ 307 (478)
||+|+|++++.+++. ..+++||+++++++|+.|+++.+.+.+|.+.+... +|.+ ++..+. ..+
T Consensus 228 ~v~Dva~a~~~~~~~-------------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~-~~~ 293 (372)
T 1db3_A 228 HAKDYVKMQWMMLQQ-------------EQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVT-GHD 293 (372)
T ss_dssp EHHHHHHHHHHTTSS-------------SSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEEC-SSS
T ss_pred EHHHHHHHHHHHHhc-------------CCCceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccc-ccc
Confidence 999999999988762 12479999999999999999999999997543211 1110 000000 000
Q ss_pred HHHHhhhhccccccCCCCC-CcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 308 FFYSVLYPWLNRWWLPQPL-ILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 308 ~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.....++.... . ..|. ..+.. .....+|++|++++|||+|+++++++++++++||+++...
T Consensus 294 ~~~~~~~~~~~-~--~~~~~~~~~~----~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 355 (372)
T 1db3_A 294 APGVKPGDVII-A--VDPRYFRPAE----VETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 355 (372)
T ss_dssp CTTCCTTCEEE-E--ECGGGCCCCC-----CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccee-e--ccccccCCCc----hhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhc
Confidence 00000000000 0 0000 00000 1123579999999999999999999999999999877655
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=346.38 Aligned_cols=297 Identities=19% Similarity=0.216 Sum_probs=236.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVF 83 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~Vi 83 (478)
.+.+++|+|||||||||||++|+++|+++|++ |++++|+.+..........+++++.+|++|.+++.++++ ++|+||
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vi 93 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHE-ILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVV 93 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCE-EEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEE
Confidence 34577889999999999999999999999998 999998654321111112578999999999999999999 999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCcccc--CCCCCCCCCCCCccCCchHhh
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIV--NGNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~--~~~E~~p~~p~~~~~~~Y~~s 161 (478)
|+|+..... +..++. +++|+.|+.+++++|.+.+++++||+||.++ |+..... +.+|+. .| .+.|+.|
T Consensus 94 h~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~-~~~~~~~~~~~~E~~--~~----~~~Y~~s 163 (330)
T 2pzm_A 94 HSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALC-YGRPATVPIPIDSPT--AP----FTSYGIS 163 (330)
T ss_dssp ECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGG-GCSCSSSSBCTTCCC--CC----CSHHHHH
T ss_pred ECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHH-hCCCccCCCCcCCCC--CC----CChHHHH
Confidence 999975432 223333 8999999999999999999999999999998 4543322 667765 33 3789999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH-HH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL-AL 239 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~-a~ 239 (478)
|..+|++++.+ +++.+++||+++|||+.. ..++.++..+..|. ..++++. .++|+|++|+|+ ++
T Consensus 164 K~~~e~~~~~~-----------~~~~~~iR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~ 229 (330)
T 2pzm_A 164 KTAGEAFLMMS-----------DVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIAD 229 (330)
T ss_dssp HHHHHHHHHTC-----------SSCEEEEEECEEECTTCCSSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHH
T ss_pred HHHHHHHHHHc-----------CCCEEEEeeeeeECcCCCCCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHH
Confidence 99999998753 678999999999999973 45667777777776 3566777 899999999999 99
Q ss_pred HHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccc
Q 011770 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNR 319 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~ 319 (478)
+.+++. + . |++||+++++++++.|+++.+.+.+|.+ +....|.+
T Consensus 230 ~~~~~~-----------~-~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~---------------------- 273 (330)
T 2pzm_A 230 LSLQEG-----------R-P-TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVV---------------------- 273 (330)
T ss_dssp HHTSTT-----------C-C-CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEE----------------------
T ss_pred HHHhhc-----------C-C-CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCC----------------------
Confidence 988762 2 2 8899999999999999999999999987 44333311
Q ss_pred ccCCCCCCcHHHhhhhcceeEechHhH-----HHhCCCCcCCChHHHHHHHHHHHHHccCCCCC
Q 011770 320 WWLPQPLILPAEVYKVGVTHYFSLLKA-----KDELCYVPIVSPREGMAATISYWQDRKRKSLD 378 (478)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~d~~ka-----~~~LG~~p~~~~~e~l~~~i~~~~~~~~~~~~ 378 (478)
+ + .....+|++|+ ++ |||+|+++++++|+++++||++++.....
T Consensus 274 -----~-----~----~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l~~~~~~~~~~~~~~~~ 322 (330)
T 2pzm_A 274 -----A-----P----GADDVPSVVLDPSKTETE-FGWKAKVDFKDTITGQLAWYDKYGVTDIF 322 (330)
T ss_dssp -----C-----C----CTTSCSEECBCCHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHCSCSCC
T ss_pred -----c-----c----hhhccCCHHHHhhchHHH-cCCcccCCHHHHHHHHHHHHHhhCccccc
Confidence 0 0 11234677777 77 99999999999999999999988776433
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=347.47 Aligned_cols=295 Identities=17% Similarity=0.204 Sum_probs=218.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC-----cCEEEEcc
Q 011770 13 TFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG-----VDCVFHVA 86 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~-----~D~ViHlA 86 (478)
+|||||||||||++|+++|+++| ++ |++++|.+.... .....+++ +.+|++|.+.+.+++++ +|+|||+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~--~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a 76 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITD-ILVVDNLKDGTK--FVNLVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEG 76 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCC-EEEEECCSSGGG--GHHHHTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcE-EEEEccCCCCch--hhhcCcce-eccccccHHHHHHHHhccccCCCcEEEECc
Confidence 58999999999999999999999 88 999988765321 11112233 77999999999999985 99999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHH
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAE 166 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE 166 (478)
+.... ...++...+++|+.|+.+++++|++.++ ++||+||.++ |+.....+.+|+.+..|. ++|+.+|..+|
T Consensus 77 ~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v-~g~~~~~~~~E~~~~~p~----~~Y~~sK~~~e 148 (310)
T 1eq2_A 77 ACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAAT-YGGRTSDFIESREYEKPL----NVYGYSKFLFD 148 (310)
T ss_dssp SCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGG-GTTCCSCBCSSGGGCCCS----SHHHHHHHHHH
T ss_pred ccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHH-hCCCCCCCCCCCCCCCCC----ChhHHHHHHHH
Confidence 96543 3345678899999999999999999999 9999999998 565555577888877764 78999999999
Q ss_pred HHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCc-cccceeHHHHHHHH
Q 011770 167 QLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSV-KTDWIYVDNLVLAL 239 (478)
Q Consensus 167 ~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~-~~~~v~V~Dva~a~ 239 (478)
++++.+.. ..+++++++||+.||||++. ..++.+++.+..|..+.++|++++ .++|+|++|+|+++
T Consensus 149 ~~~~~~~~-------~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~ 221 (310)
T 1eq2_A 149 EYVRQILP-------EANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVN 221 (310)
T ss_dssp HHHHHHGG-------GCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHH
T ss_pred HHHHHHHH-------HcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHH
Confidence 99998864 46899999999999999875 467788888888887777888889 99999999999999
Q ss_pred HHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccc
Q 011770 240 ILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNR 319 (478)
Q Consensus 240 ~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~ 319 (478)
+.+++. +. +++||+++++++|+.|+++.+.+.+|.+ +...+|.+.
T Consensus 222 ~~~~~~-----------~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--------------------- 266 (310)
T 1eq2_A 222 LWFLEN-----------GV--SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPD--------------------- 266 (310)
T ss_dssp HHHHHH-----------CC--CEEEEESCSCCBCHHHHHHHC--------------------------------------
T ss_pred HHHHhc-----------CC--CCeEEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCCh---------------------
Confidence 999873 12 7899999999999999999999999976 221112110
Q ss_pred ccCCCCCCcHHHhhhhcceeEechHhHHHhCCC-CcCCChHHHHHHHHHHHHHc
Q 011770 320 WWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY-VPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~-~p~~~~~e~l~~~i~~~~~~ 372 (478)
. . .........+|++|+++ ||| .|.++++++|+++++||+++
T Consensus 267 -----~-~----~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 267 -----K-L----KGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp ---------------CCCSCCBCCHHHHH-TTCCCCCCCHHHHHHHHHHHTC--
T ss_pred -----h-h----hcccccccccchHHHHh-cCCCCCCCCHHHHHHHHHHHHHhc
Confidence 0 0 00011123578999976 999 89999999999999999754
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=350.51 Aligned_cols=294 Identities=16% Similarity=0.098 Sum_probs=233.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC--cCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG--VDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViHlAa~~ 89 (478)
|+|||||||||||++|+++|+ +|++ |++++|++. ++.+|++|.+++.+++++ +|+|||+|+..
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~-V~~~~r~~~-------------~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~ 65 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGN-LIALDVHSK-------------EFCGDFSNPKGVAETVRKLRPDVIVNAAAHT 65 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSE-EEEECTTCS-------------SSCCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCe-EEEeccccc-------------cccccCCCHHHHHHHHHhcCCCEEEECcccC
Confidence 479999999999999999999 8998 999988652 247999999999999986 99999999975
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
....+..++...+++|+.|+.+++++|++.++ |+||+||.++ |++....+.+|+.+..|. +.|+.+|.++|+++
T Consensus 66 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v-y~~~~~~~~~E~~~~~p~----~~Y~~sK~~~E~~~ 139 (299)
T 1n2s_A 66 AVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYV-FPGTGDIPWQETDATSPL----NVYGKTKLAGEKAL 139 (299)
T ss_dssp CHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGG-SCCCTTCCBCTTSCCCCS----SHHHHHHHHHHHHH
T ss_pred CHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccE-EeCCCCCCCCCCCCCCCc----cHHHHHHHHHHHHH
Confidence 54444566788899999999999999999998 8999999998 555555678888887765 78999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
+.+. .+++++||+.+|||++..+++.+++.+..|..+...|+ +.++|+|++|+|++++.+++....
T Consensus 140 ~~~~-----------~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~~- 205 (299)
T 1n2s_A 140 QDNC-----------PKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIND--QYGAPTGAELLADCTAHAIRVALN- 205 (299)
T ss_dssp HHHC-----------SSEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEECS--CEECCEEHHHHHHHHHHHHHHHHH-
T ss_pred HHhC-----------CCeEEEeeeeecCCCcCcHHHHHHHHHhcCCCEEeecC--cccCCeeHHHHHHHHHHHHHHhcc-
Confidence 8864 27899999999999887778888888888876666664 789999999999999999873100
Q ss_pred CCCCCCCCCC-CCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCc
Q 011770 250 IPGQKGRPIA-SGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLIL 328 (478)
Q Consensus 250 ~~~~~~~~~~-~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~ 328 (478)
.. .+++||+++++++|+.|+++.+.+.+|.+.+...+|.. .+.....| ..+.
T Consensus 206 --------~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------------~~~~~~~~-~~~~-- 258 (299)
T 1n2s_A 206 --------KPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTEL----------------NAVPTSAY-PTPA-- 258 (299)
T ss_dssp --------CGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEE----------------EEECSTTS-CCSS--
T ss_pred --------ccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccc----------------cccccccc-cCcC--
Confidence 12 47899999999999999999999999876432221110 00000000 0000
Q ss_pred HHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 329 PAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 329 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
.......+|++|++++|||+|+ +++++|+++++||+++.
T Consensus 259 -----~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~~~ 297 (299)
T 1n2s_A 259 -----SRPGNSRLNTEKFQRNFDLILP-QWELGVKRMLTEMFTTT 297 (299)
T ss_dssp -----CCCSBCCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHSCC
T ss_pred -----CCCCceeeeHHHHHHhcCCCCC-CHHHHHHHHHHHHHhcC
Confidence 0112456899999999999998 79999999999998654
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=344.82 Aligned_cols=295 Identities=20% Similarity=0.212 Sum_probs=232.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC--cCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG--VDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViHl 85 (478)
.++||+|||||||||||++|+++|+++|++ |++++|+............+++++.+|++|.+++.+++++ +|+|||+
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~ 96 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGDK-VVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT 96 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence 467889999999999999999999999998 9999987543211111115789999999999999999987 9999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeC----CccccCCCCCCCCCCCCccC-CchHh
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFG----GKEIVNGNESLPYFPIDEHV-DSYGR 160 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g----~~~~~~~~E~~p~~p~~~~~-~~Y~~ 160 (478)
|+..... +..++. +++|+.++.+++++|.+.+++++||+||.++| + .... +.+|+. .| . +.|+.
T Consensus 97 A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~-g~~~~~~~~-~~~E~~--~p----~~~~Y~~ 165 (333)
T 2q1w_A 97 AASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCY-GVKPIQQPV-RLDHPR--NP----ANSSYAI 165 (333)
T ss_dssp CCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGG-CSCCCSSSB-CTTSCC--CC----TTCHHHH
T ss_pred ceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHh-CCCcccCCC-CcCCCC--CC----CCCchHH
Confidence 9975432 223333 89999999999999999999999999999984 4 3333 667765 22 3 68999
Q ss_pred hHHHHHHHHHH-HcCCCCccCCCCcceEEEEeCCceeCCCCC-CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 161 SKSVAEQLVLK-SNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 161 sK~~aE~~v~~-~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
+|..+|++++. +. +++++||+++|||+.. ..++.+++.+..|. .+++ +++.++|+|++|+|++
T Consensus 166 sK~~~E~~~~~s~~------------~~~ilR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~a 230 (333)
T 2q1w_A 166 SKSANEDYLEYSGL------------DFVTFRLANVVGPRNVSGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARA 230 (333)
T ss_dssp HHHHHHHHHHHHTC------------CEEEEEESEEESTTCCSSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHH
T ss_pred HHHHHHHHHHhhhC------------CeEEEeeceEECcCCcCcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHH
Confidence 99999999987 52 6899999999999853 46777777777776 3456 6788999999999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccc
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLN 318 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~ 318 (478)
++.+++. +. |++||+++++++++.|+++.+.+.+|.+ +...+|..
T Consensus 231 i~~~~~~-----------~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~--------------------- 275 (333)
T 2q1w_A 231 TVRAVDG-----------VG--HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIR--------------------- 275 (333)
T ss_dssp HHHHHTT-----------CC--CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEE---------------------
T ss_pred HHHHHhc-----------CC--CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCC---------------------
Confidence 9999872 22 8899999999999999999999999987 43333321
Q ss_pred cccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 319 RWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 319 ~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
... .........+|++|++++ ||+|+++++++|+++++||++++..
T Consensus 276 ----~~~------~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~~~~ 321 (333)
T 2q1w_A 276 ----ELG------PDDAPSILLDPSRTIQDF-GKIEFTPLKETVAAAVAYFREYGVS 321 (333)
T ss_dssp ----ECC------TTSCCCCCBCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHCC-
T ss_pred ----Ccc------cccccccccCCHHHHHhc-CCCcCCCHHHHHHHHHHHHHHHCCC
Confidence 000 011123456899999998 9999999999999999999988753
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=353.62 Aligned_cols=305 Identities=20% Similarity=0.212 Sum_probs=239.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc----ccccc-----CC-CeEEEEecCCCHHHHHHHhcC--
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW----SHLLI-----NH-GVHCIQGDVVSKIDVEKAARG-- 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~----~~~~~-----~~-~v~~v~gDl~d~~~l~~~l~~-- 78 (478)
+|+|||||||||||++|+++|+++|++ |++++|+..... ..... .. +++++.+|++|.+++.+++++
T Consensus 28 ~k~vlVtGatG~IG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 106 (381)
T 1n7h_A 28 RKIALITGITGQDGSYLTEFLLGKGYE-VHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK 106 (381)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCeEEEEcCCchHHHHHHHHHHHCCCE-EEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence 379999999999999999999999998 999998765310 00000 12 789999999999999999985
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-----eEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-----RLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-----r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
+|+|||+|+......+..++...+++|+.||.+++++|.+.+++ +|||+||.++ |+.... +.+|+.|..|.
T Consensus 107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~v-yg~~~~-~~~E~~~~~~~-- 182 (381)
T 1n7h_A 107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEM-FGSTPP-PQSETTPFHPR-- 182 (381)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGG-GTTSCS-SBCTTSCCCCC--
T ss_pred CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHH-hCCCCC-CCCCCCCCCCC--
Confidence 69999999976544344567788999999999999999998876 9999999998 454444 78888887764
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-c----HHHHHHHHHcCCC-CeeeCCCCccc
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-H----LPRIVSLAKLGLV-PFKIGEPSVKT 227 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~----~~~~i~~~~~g~~-~~~~g~g~~~~ 227 (478)
+.|+.+|..+|++++.+.. ..+++++++|++++|||+... + +..++..+..|.. ...+|++++.+
T Consensus 183 --~~Y~~sK~~~E~~~~~~~~-------~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 253 (381)
T 1n7h_A 183 --SPYAASKCAAHWYTVNYRE-------AYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASR 253 (381)
T ss_dssp --SHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEE
T ss_pred --CchHHHHHHHHHHHHHHHH-------HhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCcee
Confidence 7899999999999988753 458999999999999998643 2 3344555556653 34578889999
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCc-ccCChHHHHHHHHHH
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPK-SWLAVPHALFLGKVF 306 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~-~~lp~~~~~~~a~~~ 306 (478)
+|+|++|+|++++.+++. ..+++||+++++++++.|+++.+.+.+|.+.+. ..++..
T Consensus 254 ~~v~v~Dva~a~~~~~~~-------------~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------- 311 (381)
T 1n7h_A 254 DWGFAGDYVEAMWLMLQQ-------------EKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR--------- 311 (381)
T ss_dssp ECEEHHHHHHHHHHHHTS-------------SSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGG---------
T ss_pred eeEEHHHHHHHHHHHHhC-------------CCCCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcc---------
Confidence 999999999999999872 124799999999999999999999999975321 111000
Q ss_pred HHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 307 SFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
. ..| .. .....+|++|++++|||+|+++++++|+++++||+++..
T Consensus 312 ---------~------~~~----~~----~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 356 (381)
T 1n7h_A 312 ---------Y------FRP----AE----VDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAK 356 (381)
T ss_dssp ---------G------SCS----SC----CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ---------c------CCc----cc----cccccCCHHHHHHhcCCcccCCHHHHHHHHHHHHHhhcc
Confidence 0 011 00 112357999999999999999999999999999987654
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=340.01 Aligned_cols=281 Identities=17% Similarity=0.134 Sum_probs=230.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlA 86 (478)
...++|||||||||||++|+++|+++|++ |++++|+ .+|++|.+++.++++ ++|+|||+|
T Consensus 10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~-----------------~~Dl~d~~~~~~~~~~~~~d~vih~A 71 (292)
T 1vl0_A 10 HHHMKILITGANGQLGREIQKQLKGKNVE-VIPTDVQ-----------------DLDITNVLAVNKFFNEKKPNVVINCA 71 (292)
T ss_dssp --CEEEEEESTTSHHHHHHHHHHTTSSEE-EEEECTT-----------------TCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cccceEEEECCCChHHHHHHHHHHhCCCe-EEeccCc-----------------cCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 34579999999999999999999999998 9999875 279999999999998 899999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHH
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAE 166 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE 166 (478)
+......+..++...+++|+.|+.+++++|++.++ |+||+||.++ |++....+.+|+.|..|. ++|+.+|..+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v-~~~~~~~~~~E~~~~~~~----~~Y~~sK~~~E 145 (292)
T 1vl0_A 72 AHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYV-FDGEAKEPITEFDEVNPQ----SAYGKTKLEGE 145 (292)
T ss_dssp CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGG-SCSCCSSCBCTTSCCCCC----SHHHHHHHHHH
T ss_pred ccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHe-ECCCCCCCCCCCCCCCCc----cHHHHHHHHHH
Confidence 97544334456788999999999999999999998 9999999998 555555678888887664 78999999999
Q ss_pred HHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcc
Q 011770 167 QLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGL 246 (478)
Q Consensus 167 ~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l 246 (478)
++++.+. .+++++||+.|||| +..+++.++..+..+..+...| ++.++|+|++|+|++++.+++.
T Consensus 146 ~~~~~~~-----------~~~~~lR~~~v~G~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~- 210 (292)
T 1vl0_A 146 NFVKALN-----------PKYYIVRTAWLYGD-GNNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE- 210 (292)
T ss_dssp HHHHHHC-----------SSEEEEEECSEESS-SSCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH-
T ss_pred HHHHhhC-----------CCeEEEeeeeeeCC-CcChHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhc-
Confidence 9998864 25899999999999 5566777777777777665666 4789999999999999999873
Q ss_pred cCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q 011770 247 LDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPL 326 (478)
Q Consensus 247 ~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~ 326 (478)
+ .+++||+++++++|+.|+++.+.+.+|.+.+...+|.+.. ..+.
T Consensus 211 ----------~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-----------------------~~~~ 255 (292)
T 1vl0_A 211 ----------K--NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEF-----------------------PRPA 255 (292)
T ss_dssp ----------T--CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTS-----------------------CCSS
T ss_pred ----------C--CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeecccccc-----------------------Cccc
Confidence 1 5789999999999999999999999998755444442110 0000
Q ss_pred CcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHH
Q 011770 327 ILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQD 371 (478)
Q Consensus 327 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~ 371 (478)
. ......+|++|++++|||+|+ +++++|+++++||++
T Consensus 256 ~-------~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~ 292 (292)
T 1vl0_A 256 K-------RPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQM 292 (292)
T ss_dssp C-------CCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHTC
T ss_pred C-------CCccccccHHHHHHHcCCCCC-CHHHHHHHHHHHhcC
Confidence 0 012346899999999999999 899999999999963
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=338.23 Aligned_cols=300 Identities=18% Similarity=0.154 Sum_probs=231.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccC
Q 011770 13 TFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASY 88 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~ 88 (478)
+|||||||||||++|+++|+++ |++ |++++|+.+.. .+++++.+|++|.+++.++++ ++|+|||+|+.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~ 72 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKN-VIASDIVQRDT-------GGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGI 72 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGG-EEEEESSCCCC-------TTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCE-EEEecCCCccc-------cCceEEEecCCCHHHHHHHHhhcCCcEEEECCcc
Confidence 5999999999999999999998 888 99999876521 157889999999999999998 89999999996
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHH
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~ 168 (478)
... ....++...+++|+.||.+++++|++.+++++||+||.++|.+.....+.+|+.|..|. ++|+.||..+|++
T Consensus 73 ~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~----~~Y~~sK~~~e~~ 147 (317)
T 3ajr_A 73 LSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPR----TMFGVTKIAAELL 147 (317)
T ss_dssp CHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCC----SHHHHHHHHHHHH
T ss_pred cCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCC----chHHHHHHHHHHH
Confidence 432 23346678899999999999999999999999999999995433333456777776664 7899999999999
Q ss_pred HHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------C-cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHH
Q 011770 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------R-HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALIL 241 (478)
Q Consensus 169 v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~-~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~ 241 (478)
++.+.. ..+++++++||+++||++.. . ..+.+.+.+..+ ....++++++.++|+|++|+|++++.
T Consensus 148 ~~~~~~-------~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~Dva~a~~~ 219 (317)
T 3ajr_A 148 GQYYYE-------KFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKRE-KYKCYLAPNRALPMMYMPDALKALVD 219 (317)
T ss_dssp HHHHHH-------HHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTC-CEEECSCTTCCEEEEEHHHHHHHHHH
T ss_pred HHHHHH-------hcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCC-CceeecCccceeeeeEHHHHHHHHHH
Confidence 987753 46899999999999997531 1 233344444444 44567788899999999999999999
Q ss_pred HHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcccccc
Q 011770 242 ASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWW 321 (478)
Q Consensus 242 a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (478)
+++.... ....|++||+++ +++++.|+++.+.+.+|.. +....|.
T Consensus 220 ~l~~~~~--------~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~~-~i~~~~~------------------------- 264 (317)
T 3ajr_A 220 LYEADRD--------KLVLRNGYNVTA-YTFTPSELYSKIKERIPEF-EIEYKED------------------------- 264 (317)
T ss_dssp HHHCCGG--------GCSSCSCEECCS-EEECHHHHHHHHHTTCCSC-CEEECCC-------------------------
T ss_pred HHhCCcc--------ccccCceEecCC-ccccHHHHHHHHHHHCCcc-ccccccc-------------------------
Confidence 9873100 011358999986 6799999999999998832 2111111
Q ss_pred CCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 322 LPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.+.... ......+|++|++++|||+|+++++++++++++|++++...
T Consensus 265 ------~~~~~~-~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 311 (317)
T 3ajr_A 265 ------FRDKIA-ATWPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEKLGI 311 (317)
T ss_dssp ------HHHHHH-TTSCSCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHTTS
T ss_pred ------cchhhc-cccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 000000 01123579999999999999999999999999999876554
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=347.23 Aligned_cols=322 Identities=18% Similarity=0.156 Sum_probs=246.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC-----CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC---cCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG-----AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG---VDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G-----~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~---~D~V 82 (478)
+|+|||||||||||++|+++|+++| ++ |++++|++.... ....+++++.+|++|.+++.+++++ +|+|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~-V~~~~r~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~v 76 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWK-VYGVARRTRPAW---HEDNPINYVQCDISDPDDSQAKLSPLTDVTHV 76 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEE-EEEEESSCCCSC---CCSSCCEEEECCTTSHHHHHHHHTTCTTCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceE-EEEEeCCCCccc---cccCceEEEEeecCCHHHHHHHHhcCCCCCEE
Confidence 3689999999999999999999999 88 999999866432 2345789999999999999999998 9999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEE-------EEeccceeeCCc--cccCCCCCCCCCCC
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLV-------YVSTYNVVFGGK--EIVNGNESLPYFPI 151 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V-------~~SS~~v~~g~~--~~~~~~E~~p~~p~ 151 (478)
||+|+... .++...+++|+.||.+++++|++. +++++| |+||.++ ||.. ...+.+|+.|..|.
T Consensus 77 ih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~v-yg~~~~~~~~~~E~~~~~~~ 150 (364)
T 2v6g_A 77 FYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFES-YGKIESHDPPYTEDLPRLKY 150 (364)
T ss_dssp EECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGG-TTTSCCCCSSBCTTSCCCSS
T ss_pred EECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhh-ccccccCCCCCCccccCCcc
Confidence 99999642 245678899999999999999998 899998 8999988 4442 23567888776652
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCc-ceEEEEeCCceeCCCCCCc----HHH-HHHHH--HcCCCCeeeCCC
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKC-LYTCAVRPAAIYGPGEERH----LPR-IVSLA--KLGLVPFKIGEP 223 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~g-l~~~ilRp~~vyGp~~~~~----~~~-~i~~~--~~g~~~~~~g~g 223 (478)
.+.| ..+|++++++.. ..+ ++++++||+.||||++... .+. +++.+ ..|..+.++|++
T Consensus 151 ---~~~y----~~~E~~~~~~~~-------~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 216 (364)
T 2v6g_A 151 ---MNFY----YDLEDIMLEEVE-------KKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCK 216 (364)
T ss_dssp ---CCHH----HHHHHHHHHHHT-------TSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCH
T ss_pred ---chhh----HHHHHHHHHHhh-------cCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCc
Confidence 2567 458999988764 355 9999999999999987532 233 34444 467766668887
Q ss_pred C---ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcc--cCChHH
Q 011770 224 S---VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKS--WLAVPH 298 (478)
Q Consensus 224 ~---~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~--~lp~~~ 298 (478)
+ ...+++||+|+|++++.+++. +...|++||+++++++|+.|+++.+.+.+|.+.+.. .+|.++
T Consensus 217 ~~~~~~~~~~~v~Dva~a~~~~~~~-----------~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~ 285 (364)
T 2v6g_A 217 AAWDGYSDCSDADLIAEHHIWAAVD-----------PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKL 285 (364)
T ss_dssp HHHHSCBCCEEHHHHHHHHHHHHHC-----------GGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCH
T ss_pred ccccccCCCCcHHHHHHHHHHHHhC-----------CCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccH
Confidence 4 447888899999999999873 234678999999999999999999999999887665 788887
Q ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCCcHHHh-------hhhcce-eEechHhHHHhCCCCcCCChHHHHHHHHHHHH
Q 011770 299 ALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEV-------YKVGVT-HYFSLLKAKDELCYVPIVSPREGMAATISYWQ 370 (478)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------~~~~~~-~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~ 370 (478)
+..++...+....+.+... ..+. ..... ..+..+ ..+|++|+++ |||+|.++++++++++++||+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~ 358 (364)
T 2v6g_A 286 QDLMKGKEPVWEEIVRENG-----LTPT-KLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAK 358 (364)
T ss_dssp HHHTTTCHHHHHHHHHHTT-----CCCC-CHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHhC-----CCcc-ccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHH
Confidence 7766653333332221100 0110 00111 011244 4789999988 999999999999999999999
Q ss_pred HccC
Q 011770 371 DRKR 374 (478)
Q Consensus 371 ~~~~ 374 (478)
+++.
T Consensus 359 ~~g~ 362 (364)
T 2v6g_A 359 AYKI 362 (364)
T ss_dssp HTTS
T ss_pred HcCC
Confidence 8764
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=372.56 Aligned_cols=324 Identities=21% Similarity=0.230 Sum_probs=239.4
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHH
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
|+-.+++.+++|+||||||+||||++|+++|+++|++ |++++|+....... .....+++++.+|++|.+++.++
T Consensus 1 m~~~~~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~ 79 (699)
T 1z45_A 1 MTAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYD-CVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKV 79 (699)
T ss_dssp ----------CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHH
T ss_pred CCcccccccCCCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHH
Confidence 4544455677899999999999999999999999998 99999875432110 01245788999999999999999
Q ss_pred hc--CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCcc----ccCCCCCCCCC
Q 011770 76 AR--GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKE----IVNGNESLPYF 149 (478)
Q Consensus 76 l~--~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~----~~~~~E~~p~~ 149 (478)
++ ++|+|||+|+.........++...+++|+.|+.+++++|++.+++++||+||.++| +... ..+.+|+.+..
T Consensus 80 ~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vy-g~~~~~~~~~~~~E~~~~~ 158 (699)
T 1z45_A 80 FKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVY-GDATRFPNMIPIPEECPLG 158 (699)
T ss_dssp HHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGG-CCGGGSTTCCSBCTTSCCC
T ss_pred HHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHh-CCCccccccCCccccCCCC
Confidence 98 89999999997544333445667899999999999999999999999999999984 4322 24567777766
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------------CcHHHHHHHHHc-CCC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------------RHLPRIVSLAKL-GLV 216 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------------~~~~~~i~~~~~-g~~ 216 (478)
|. +.|+.||.++|++++.+... ...+++++++||+++|||+.. .+++.+.+.+.. +..
T Consensus 159 p~----~~Y~~sK~~~E~~~~~~~~~-----~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 229 (699)
T 1z45_A 159 PT----NPYGHTKYAIENILNDLYNS-----DKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREK 229 (699)
T ss_dssp CC----SHHHHHHHHHHHHHHHHHHH-----STTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSC
T ss_pred CC----ChHHHHHHHHHHHHHHHHHh-----ccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCc
Confidence 64 78999999999999876531 016899999999999998632 234444443332 234
Q ss_pred CeeeC------CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCC
Q 011770 217 PFKIG------EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP 290 (478)
Q Consensus 217 ~~~~g------~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~ 290 (478)
+.++| ++++.++||||+|+|++++.+++..... ......+++||+++++++++.|+++.+.+.+|.+.+
T Consensus 230 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~-----~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~ 304 (699)
T 1z45_A 230 LYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAY-----NENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLP 304 (699)
T ss_dssp CCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHS-----CTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCC
T ss_pred eEEeCCcccCCCCCeeEeeEEHHHHHHHHHHHHhhhhcc-----ccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCC
Confidence 55566 6788999999999999999988632110 001123579999999999999999999999998755
Q ss_pred cccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHH
Q 011770 291 KSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQ 370 (478)
Q Consensus 291 ~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~ 370 (478)
....|.. . .+ .....+|++|++++|||+|+++++++|+++++|++
T Consensus 305 ~~~~~~~-----------------~-------~~-----------~~~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~ 349 (699)
T 1z45_A 305 YKVTGRR-----------------A-------GD-----------VLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTT 349 (699)
T ss_dssp C--------------------------------------------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHH
T ss_pred ceecCCC-----------------C-------Cc-----------cccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3322100 0 00 01346899999999999999999999999999999
Q ss_pred HccCC
Q 011770 371 DRKRK 375 (478)
Q Consensus 371 ~~~~~ 375 (478)
++...
T Consensus 350 ~~~~~ 354 (699)
T 1z45_A 350 ENPFG 354 (699)
T ss_dssp HCTTC
T ss_pred hCCcc
Confidence 87665
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=342.60 Aligned_cols=308 Identities=20% Similarity=0.203 Sum_probs=240.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcC-------CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRG-------AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G-------~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~- 77 (478)
+..+++|+||||||+||||++|+++|+++| ++ |++++|+.+... .....+++++.+|++|.+++.++++
T Consensus 9 ~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~-V~~~~r~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~ 85 (342)
T 2hrz_A 9 NLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEK-FTLIDVFQPEAP--AGFSGAVDARAADLSAPGEAEKLVEA 85 (342)
T ss_dssp CSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEE-EEEEESSCCCCC--TTCCSEEEEEECCTTSTTHHHHHHHT
T ss_pred CCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCce-EEEEEccCCccc--cccCCceeEEEcCCCCHHHHHHHHhc
Confidence 344678899999999999999999999999 77 999998765321 1124568899999999999999984
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-----CCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-----IQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-----v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
++|+|||+|+... ..+..++...+++|+.||.+++++|++.+ ++++||+||.++ |+.....+.+|+.|..|.
T Consensus 86 ~~d~vih~A~~~~-~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~-~~~~~~~~~~E~~~~~~~- 162 (342)
T 2hrz_A 86 RPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAV-FGAPLPYPIPDEFHTTPL- 162 (342)
T ss_dssp CCSEEEECCCCCH-HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGG-CCSSCCSSBCTTCCCCCS-
T ss_pred CCCEEEECCccCc-ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHh-hCCCCCCCcCCCCCCCCc-
Confidence 8999999999643 22345677889999999999999999887 899999999998 554434578898887765
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeC-CCCC-----CcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYG-PGEE-----RHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyG-p~~~-----~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
++|+.||.++|++++++.. ..+++.+++|++.+|| |+.. .+++.+++.+..|....++++++..
T Consensus 163 ---~~Y~~sK~~~e~~~~~~~~-------~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (342)
T 2hrz_A 163 ---TSYGTQKAICELLLSDYSR-------RGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIR 232 (342)
T ss_dssp ---SHHHHHHHHHHHHHHHHHH-------TTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCE
T ss_pred ---chHHHHHHHHHHHHHHHHH-------hcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccc
Confidence 7899999999999988764 4689999999999999 7652 2466777777888876666776778
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCC--cccCChHHHHHHHH
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP--KSWLAVPHALFLGK 304 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~--~~~lp~~~~~~~a~ 304 (478)
.+++|++|+|++++.+++.... ....+++||++ ++++++.|+++.+.+.+|.+.+ ....|...
T Consensus 233 ~~~~~v~Dva~~~~~~~~~~~~--------~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~------ 297 (342)
T 2hrz_A 233 HWHASPRSAVGFLIHGAMIDVE--------KVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEM------ 297 (342)
T ss_dssp EEEECHHHHHHHHHHHHHSCHH--------HHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHH------
T ss_pred eeeEehHHHHHHHHHHHhcccc--------ccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcc------
Confidence 8899999999999999873100 00246799996 5789999999999999986531 11112110
Q ss_pred HHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHH
Q 011770 305 VFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQ 370 (478)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~ 370 (478)
..... ......+|++|+++ |||+|+++++++|+++++||+
T Consensus 298 ------------------------~~~~~-~~~~~~~d~~k~~~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 298 ------------------------IMRMC-EGWAPGFEAKRARE-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp ------------------------HHHHH-TTSCCCBCCHHHHH-TTCCCCSSHHHHHHHHHHHHS
T ss_pred ------------------------hhhhh-cccccccChHHHHH-cCCCCCCCHHHHHHHHHHHhc
Confidence 00000 01122579999999 999999999999999999997
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=371.83 Aligned_cols=326 Identities=17% Similarity=0.176 Sum_probs=250.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH-HHHHhcCcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID-VEKAARGVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~-l~~~l~~~D~ViHlA 86 (478)
+++|+|||||||||||++|+++|+++ |++ |++++|+..... ......+++++.+|++|.++ +.++++++|+|||+|
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~-V~~~~r~~~~~~-~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~A 390 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYE-VYGLDIGSDAIS-RFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 390 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEE-EEEEESCCTTTG-GGTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEECC
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCE-EEEEEcCchhhh-hhccCCceEEEECCCCCcHHHHHHhhcCCCEEEECc
Confidence 46789999999999999999999998 888 999998765321 12234679999999999765 778889999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCC---CCCCccCCchHhhHH
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYGRSKS 163 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~---~p~~~~~~~Y~~sK~ 163 (478)
|.........++...+++|+.||.+++++|++.+ +|+||+||.++ |+.....+.+|+.+. .|...+.+.|+.||.
T Consensus 391 a~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~v-yg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~ 468 (660)
T 1z7e_A 391 AIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEV-YGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQ 468 (660)
T ss_dssp CCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGG-GBTCCSSSBCTTTCCEEECCTTCTTHHHHHHHH
T ss_pred eecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHH-cCCCCCcccCCCccccccCcccCCCCCcHHHHH
Confidence 9765444445677889999999999999999999 89999999998 555444567787653 232233468999999
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC----------CcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE----------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~----------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
++|++++.+.. ..+++++++||++||||++. ..++.++..+..|..+.++|++++.++|+|++
T Consensus 469 ~~E~~~~~~~~-------~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 541 (660)
T 1z7e_A 469 LLDRVIWAYGE-------KEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 541 (660)
T ss_dssp HHHHHHHHHHH-------HHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHH
T ss_pred HHHHHHHHHHH-------HcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHH
Confidence 99999988753 35899999999999999863 35677888888888877888889999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC-CCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHh
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF-PINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSV 312 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~-~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~ 312 (478)
|+|++++.+++.. .....|++||+++++ ++|+.|+++.+.+.+|.+.+...+|.+..... .+. ...
T Consensus 542 Dva~ai~~~l~~~---------~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~---~~~-~~~ 608 (660)
T 1z7e_A 542 DGIEALYRIIENA---------GNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV---VES-SSY 608 (660)
T ss_dssp HHHHHHHHHHHCG---------GGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEE---ECT-HHH
T ss_pred HHHHHHHHHHhCc---------cccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccc---hhc-ccc
Confidence 9999999998731 112467899999986 89999999999999987654444432100000 000 000
Q ss_pred hhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 313 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 313 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
. ... ........+|++|++++|||+|+++++++|+++++||+++..
T Consensus 609 ~---------~~~-------~~~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 609 Y---------GKG-------YQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_dssp H---------CTT-------CCCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSC
T ss_pred c---------ccc-------ccchhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhcc
Confidence 0 000 000123467999999999999999999999999999988765
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=341.04 Aligned_cols=292 Identities=15% Similarity=0.104 Sum_probs=205.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC--cCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG--VDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViHlAa~ 88 (478)
+|+|||||||||||++|+++|+++|++ |++++|+.+. ++ ++.+|++|.+++.+++++ +|+|||+|+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~--------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~ 70 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWH-AVGCGFRRAR--------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHCAAE 70 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEC----------------------------CHHHHHHHCCSEEEECC--
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCe-EEEEccCCCC--------CC--eEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence 478999999999999999999999998 9999986542 12 788999999999999885 8999999997
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHH
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~ 168 (478)
.....+..++...+++|+.||.+++++|.+.++ ++||+||.++| ++ ...+.+|+.|..|. +.|+.+|..+|++
T Consensus 71 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~-~~-~~~~~~E~~~~~~~----~~Y~~sK~~~e~~ 143 (315)
T 2ydy_A 71 RRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVF-DG-TNPPYREEDIPAPL----NLYGKTKLDGEKA 143 (315)
T ss_dssp -----------------CHHHHHHHHHHHHHTC-EEEEEEEGGGS-CS-SSCSBCTTSCCCCC----SHHHHHHHHHHHH
T ss_pred cChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHc-CC-CCCCCCCCCCCCCc----CHHHHHHHHHHHH
Confidence 544434556788899999999999999999997 99999999994 44 45567888877664 7899999999999
Q ss_pred HHHHcCCCCccCCCCcceEEEEeCCceeCCCCC---CcHHHHHHHHH-cCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE---RHLPRIVSLAK-LGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 169 v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~---~~~~~~i~~~~-~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
++.+. ++++++||+.||||++. .+++.++..+. .|..+... +++.++|+|++|+|++++.+++
T Consensus 144 ~~~~~-----------~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~~~ 210 (315)
T 2ydy_A 144 VLENN-----------LGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD--HWQQRFPTHVKDVATVCRQLAE 210 (315)
T ss_dssp HHHHC-----------TTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE--CSSBBCCEEHHHHHHHHHHHHH
T ss_pred HHHhC-----------CCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec--cCceECcEEHHHHHHHHHHHHH
Confidence 98763 35689999999999876 56666777777 77665444 3678999999999999998886
Q ss_pred cccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCC-cccCChHHHHHHHHHHHHHHHhhhhccccccCC
Q 011770 245 GLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP-KSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLP 323 (478)
Q Consensus 245 ~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~-~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 323 (478)
.... ....+++||+++++++++.|+++.+.+.+|.+.+ ...+|.. + .
T Consensus 211 ~~~~--------~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-----------------~-------~ 258 (315)
T 2ydy_A 211 KRML--------DPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDS-----------------P-------V 258 (315)
T ss_dssp HHHT--------CTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSC-----------------C-------C
T ss_pred hhcc--------ccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccc-----------------c-------c
Confidence 3100 1245789999999999999999999999998754 2222210 0 0
Q ss_pred CCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 324 QPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 324 ~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
.... ...+..+|++|++++ ||+|.++++++|+++++||++++
T Consensus 259 ~~~~-------~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~~ 300 (315)
T 2ydy_A 259 LGAQ-------RPRNAQLDCSKLETL-GIGQRTPFRIGIKESLWPFLIDK 300 (315)
T ss_dssp SSSC-------CCSBCCBCCHHHHHT-TCCCCCCHHHHHHHHHGGGCC--
T ss_pred cccC-------CCcccccchHHHHhc-CCCCCCCHHHHHHHHHHHHccch
Confidence 0000 012346899999998 99999999999999999998763
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=330.57 Aligned_cols=276 Identities=19% Similarity=0.152 Sum_probs=218.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
|||+|||||| ||||++|+++|+++|++ |++++|++... ......+++++.+|++|.+ ++++|+|||+|+..
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~-V~~~~r~~~~~--~~~~~~~~~~~~~D~~d~~-----~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWR-IIGTSRNPDQM--EAIRASGAEPLLWPGEEPS-----LDGVTHLLISTAPD 74 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCE-EEEEESCGGGH--HHHHHTTEEEEESSSSCCC-----CTTCCEEEECCCCB
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCE-EEEEEcChhhh--hhHhhCCCeEEEecccccc-----cCCCCEEEECCCcc
Confidence 4579999998 99999999999999998 99999876522 1223467999999999954 78999999999864
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHH--cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLE--FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~--~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~ 167 (478)
... ...+.+++++|++ .++++|||+||.+| |+.....+.+|+.|..|. ++|+.+|..+|+
T Consensus 75 ~~~-------------~~~~~~l~~a~~~~~~~~~~~v~~Ss~~v-yg~~~~~~~~E~~~~~p~----~~Y~~sK~~~E~ 136 (286)
T 3ius_A 75 SGG-------------DPVLAALGDQIAARAAQFRWVGYLSTTAV-YGDHDGAWVDETTPLTPT----AARGRWRVMAEQ 136 (286)
T ss_dssp TTB-------------CHHHHHHHHHHHHTGGGCSEEEEEEEGGG-GCCCTTCEECTTSCCCCC----SHHHHHHHHHHH
T ss_pred ccc-------------cHHHHHHHHHHHhhcCCceEEEEeeccee-cCCCCCCCcCCCCCCCCC----CHHHHHHHHHHH
Confidence 321 1236789999999 78999999999998 566666678999888775 789999999999
Q ss_pred HHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhccc
Q 011770 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLL 247 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~ 247 (478)
+++++ .+++++++||+.+|||++... ..+..|....+.++ ++.++|+|++|+|++++.+++.
T Consensus 137 ~~~~~----------~~~~~~ilRp~~v~G~~~~~~-----~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~-- 198 (286)
T 3ius_A 137 QWQAV----------PNLPLHVFRLAGIYGPGRGPF-----SKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMAR-- 198 (286)
T ss_dssp HHHHS----------TTCCEEEEEECEEEBTTBSSS-----TTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHS--
T ss_pred HHHhh----------cCCCEEEEeccceECCCchHH-----HHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhC--
Confidence 99874 378999999999999986542 33456776655555 6889999999999999999983
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCC
Q 011770 248 DDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLI 327 (478)
Q Consensus 248 ~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~ 327 (478)
...|++||+++++++|+.|+++.+.+.+|.+.+.. +|.. ....
T Consensus 199 ----------~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~-~~~~--------------------------~~~~ 241 (286)
T 3ius_A 199 ----------PDPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPA-VDFD--------------------------KADL 241 (286)
T ss_dssp ----------CCTTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCE-EEGG--------------------------GSCC
T ss_pred ----------CCCCCEEEEeCCCCccHHHHHHHHHHHcCCCCCcc-cchh--------------------------hhcc
Confidence 22678999999999999999999999999875532 2211 1111
Q ss_pred cHHHhhhhcceeEechHhHHHhCCCCcCC-ChHHHHHHHHH
Q 011770 328 LPAEVYKVGVTHYFSLLKAKDELCYVPIV-SPREGMAATIS 367 (478)
Q Consensus 328 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~~~e~l~~~i~ 367 (478)
.+........+..+|++|++++|||+|++ +++++++++++
T Consensus 242 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e~l~~~~~ 282 (286)
T 3ius_A 242 TPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQA 282 (286)
T ss_dssp CHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHHHHHHHHH
T ss_pred ChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHHHHHHHHH
Confidence 22222233456678999999999999998 79999999876
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=324.06 Aligned_cols=286 Identities=15% Similarity=0.036 Sum_probs=219.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
|||||||||||||++|+++|+++||+ |++++|++... . +..| +...+.++++|+|||+|+....
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~-V~~l~R~~~~~--------~---~~~~----~~~~~~l~~~d~vihla~~~i~ 64 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHE-VTLVSRKPGPG--------R---ITWD----ELAASGLPSCDAAVNLAGENIL 64 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCTT--------E---EEHH----HHHHHCCCSCSEEEECCCCCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCcC--------e---eecc----hhhHhhccCCCEEEEeccCccc
Confidence 68999999999999999999999999 99999875421 1 1222 3345567899999999985322
Q ss_pred c----hhhhchhhhhHhhhHHHHHHHHHHHHcCCC--eEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHH
Q 011770 92 G----KEMLQFGRVDEVNINGTCHVIEACLEFGIQ--RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 92 ~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v~--r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
. ........++++|+.+|.+++++|.+.+++ ++|++||.++ ||.....+.+|++|..|. +.|+.+|...
T Consensus 65 ~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~v-yg~~~~~~~~E~~p~~~~----~~~~~~~~~~ 139 (298)
T 4b4o_A 65 NPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAY-YQPSLTAEYDEDSPGGDF----DFFSNLVTKW 139 (298)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGG-SCCCSSCCBCTTCCCSCS----SHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeee-ecCCCCCcccccCCcccc----chhHHHHHHH
Confidence 2 123345678899999999999999998755 4889999988 666666778898887765 6788888888
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhc
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMG 245 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~ 245 (478)
|..... . ..+++++++||+.||||++ +.+..+......|... .+|++++.++||||+|+|++++.+++.
T Consensus 140 e~~~~~--~-------~~~~~~~~~r~~~v~g~~~-~~~~~~~~~~~~~~~~-~~g~g~~~~~~ihv~Dva~a~~~~~~~ 208 (298)
T 4b4o_A 140 EAAARL--P-------GDSTRQVVVRSGVVLGRGG-GAMGHMLLPFRLGLGG-PIGSGHQFFPWIHIGDLAGILTHALEA 208 (298)
T ss_dssp HHHHCC--S-------SSSSEEEEEEECEEECTTS-HHHHHHHHHHHTTCCC-CBTTSCSBCCEEEHHHHHHHHHHHHHC
T ss_pred HHHHHh--h-------ccCCceeeeeeeeEEcCCC-CchhHHHHHHhcCCcc-eecccCceeecCcHHHHHHHHHHHHhC
Confidence 865421 1 5789999999999999975 4566777777777654 679999999999999999999999973
Q ss_pred ccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCC
Q 011770 246 LLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQP 325 (478)
Q Consensus 246 l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p 325 (478)
+ ..+++||+++++++|+.|+++.+++.+|.+. .+++|.++++.+- .+...
T Consensus 209 -----------~-~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~-~~pvP~~~~~~~~--g~~~~--------------- 258 (298)
T 4b4o_A 209 -----------N-HVHGVLNGVAPSSATNAEFAQTFGAALGRRA-FIPLPSAVVQAVF--GRQRA--------------- 258 (298)
T ss_dssp -----------T-TCCEEEEESCSCCCBHHHHHHHHHHHHTCCC-CCCBCHHHHHHHH--CHHHH---------------
T ss_pred -----------C-CCCCeEEEECCCccCHHHHHHHHHHHhCcCC-cccCCHHHHHHHh--cchhH---------------
Confidence 2 2345999999999999999999999999764 4678887765431 11100
Q ss_pred CCcHHHhhhhcceeEechHhHHHhCCCCcCC-ChHHHHHHHHH
Q 011770 326 LILPAEVYKVGVTHYFSLLKAKDELCYVPIV-SPREGMAATIS 367 (478)
Q Consensus 326 ~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~~~e~l~~~i~ 367 (478)
..+..+...+++|++ ++||++++ +++++|++.++
T Consensus 259 -------~~~l~~~rv~~~kl~-~~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 259 -------IMLLEGQKVIPRRTL-ATGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp -------HHHHCCCCBCCHHHH-HTTCCCSCCSHHHHHHHHHH
T ss_pred -------HHhhCCCEEcHHHHH-HCCCCCCCCCHHHHHHHHHH
Confidence 011112235778886 58999997 79999999887
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-42 Score=340.62 Aligned_cols=303 Identities=18% Similarity=0.132 Sum_probs=213.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
+|+|||||||||||++|+++|+++|++ |++++|+...... ......+++++++|++|.+++.++++++|+|||+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 87 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYA-VNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV 87 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCE-EEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence 689999999999999999999999998 9998886542110 0011346889999999999999999999999999
Q ss_pred ccCCCCchhhhch-hhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccc---cCCCCCCCCC-----CCCccC
Q 011770 86 ASYGMSGKEMLQF-GRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEI---VNGNESLPYF-----PIDEHV 155 (478)
Q Consensus 86 Aa~~~~~~~~~~~-~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~---~~~~E~~p~~-----p~~~~~ 155 (478)
|+.... ...++ ...+++|+.||.+++++|++.+ ++||||+||.+++++.... .+.+|+.+.. |.....
T Consensus 88 A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~ 165 (338)
T 2rh8_A 88 ATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPT 165 (338)
T ss_dssp SSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCC
T ss_pred CCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCcc
Confidence 986422 22233 3488999999999999999986 9999999999865543221 2567765322 111111
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHH---HHHcCCCCeeeCCC------Ccc
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVS---LAKLGLVPFKIGEP------SVK 226 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~---~~~~g~~~~~~g~g------~~~ 226 (478)
.+|+.||.++|++++.+.. .++++++++||++||||++...++..+. ....|... .+++. ...
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~-------~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~ 237 (338)
T 2rh8_A 166 WGYPASKTLAEKAAWKFAE-------ENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEF-LINGMKGMQMLSGS 237 (338)
T ss_dssp CCCTTSCCHHHHHHHHHHH-------HHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHH-HHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHH-------HcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcc-ccccccccccccCc
Confidence 3699999999999988753 3689999999999999987543322222 12334322 22211 123
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHH
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVF 306 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~ 306 (478)
++|+||+|+|++++.+++. +. .++.||+++ ..+++.|+++.+.+.++.. .+|...
T Consensus 238 ~~~i~v~Dva~a~~~~~~~-----------~~-~~~~~~~~~-~~~s~~e~~~~l~~~~~~~----~~~~~~-------- 292 (338)
T 2rh8_A 238 VSIAHVEDVCRAHIFVAEK-----------ES-ASGRYICCA-ANTSVPELAKFLSKRYPQY----KVPTDF-------- 292 (338)
T ss_dssp EEEEEHHHHHHHHHHHHHC-----------TT-CCEEEEECS-EEECHHHHHHHHHHHCTTS----CCCCCC--------
T ss_pred ccEEEHHHHHHHHHHHHcC-----------CC-cCCcEEEec-CCCCHHHHHHHHHHhCCCC----CCCCCC--------
Confidence 4899999999999999873 12 245788876 4689999999999887521 111100
Q ss_pred HHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 307 SFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
. ..+. .....+|++|+ ++|||+|+++++++|+++++|+++++.
T Consensus 293 -----------~----~~~~---------~~~~~~d~~k~-~~lG~~p~~~l~~gl~~~~~~~~~~~~ 335 (338)
T 2rh8_A 293 -----------G----DFPP---------KSKLIISSEKL-VKEGFSFKYGIEEIYDESVEYFKAKGL 335 (338)
T ss_dssp -----------T----TSCS---------SCSCCCCCHHH-HHHTCCCSCCHHHHHHHHHHHHHHTTC
T ss_pred -----------C----CCCc---------CcceeechHHH-HHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 0 0000 01145799999 669999999999999999999987753
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=335.55 Aligned_cols=306 Identities=20% Similarity=0.153 Sum_probs=216.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---cc---CCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LI---NHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~---~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
.++++||||||+||||++|+++|+++|++ |++++|+........ .. ..+++++++|++|.+++.++++++|+|
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 81 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERGYT-VRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV 81 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence 35689999999999999999999999998 999988754211000 01 135889999999999999999999999
Q ss_pred EEcccCCCCchhhhch-hhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCc-cccCCCCCCCCCC-----CCcc
Q 011770 83 FHVASYGMSGKEMLQF-GRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGK-EIVNGNESLPYFP-----IDEH 154 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~-~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~-~~~~~~E~~p~~p-----~~~~ 154 (478)
||+|+.... ...++ ...+++|+.||.+++++|++.+ ++|+||+||.+++|+.. ...+.+|+.+..+ ...+
T Consensus 82 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 159 (337)
T 2c29_D 82 FHVATPMDF--ESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMT 159 (337)
T ss_dssp EECCCCCCS--SCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCT
T ss_pred EEeccccCC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCc
Confidence 999986421 11222 3578999999999999999988 89999999998656543 2234566643210 0012
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHH---HcCCCCeeeCCCCcccccee
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLA---KLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~---~~g~~~~~~g~g~~~~~~v~ 231 (478)
.++|+.||.++|++++.+.. ..+++++++||++||||+....++..+... ..|... .++.+. ..+|+|
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~-------~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~i~ 230 (337)
T 2c29_D 160 AWMYFVSKTLAEQAAWKYAK-------ENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEA-HYSIIR-QGQFVH 230 (337)
T ss_dssp THHHHHHHHHHHHHHHHHHH-------HHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGG-GHHHHT-EEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHH-------HcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCc-cccccC-CCCEEE
Confidence 35799999999999988753 368999999999999998654332222221 234322 222222 245999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHH
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYS 311 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~ 311 (478)
++|+|++++.+++. +. .++.|++++ ..+++.|+++.+.+.++.. .+|...
T Consensus 231 v~Dva~a~~~~~~~-----------~~-~~~~~~~~~-~~~s~~e~~~~i~~~~~~~----~~~~~~------------- 280 (337)
T 2c29_D 231 LDDLCNAHIYLFEN-----------PK-AEGRYICSS-HDCIILDLAKMLREKYPEY----NIPTEF------------- 280 (337)
T ss_dssp HHHHHHHHHHHHHC-----------TT-CCEEEEECC-EEEEHHHHHHHHHHHCTTS----CCCSCC-------------
T ss_pred HHHHHHHHHHHhcC-----------cc-cCceEEEeC-CCCCHHHHHHHHHHHCCCc----cCCCCC-------------
Confidence 99999999998873 12 244787655 5689999999999887421 112100
Q ss_pred hhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 312 VLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
. ..+ . ......+|++|+ ++|||+|+++++++++++++|+++++..
T Consensus 281 ------~----~~~----~----~~~~~~~d~~k~-~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 325 (337)
T 2c29_D 281 ------K----GVD----E----NLKSVCFSSKKL-TDLGFEFKYSLEDMFTGAVDTCRAKGLL 325 (337)
T ss_dssp ------T----TCC----T----TCCCCEECCHHH-HHHTCCCCCCHHHHHHHHHHHHHHTTSS
T ss_pred ------C----ccc----C----CCccccccHHHH-HHcCCCcCCCHHHHHHHHHHHHHHcCCC
Confidence 0 100 0 012346899999 7899999999999999999999987643
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=326.00 Aligned_cols=302 Identities=19% Similarity=0.159 Sum_probs=212.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEec-CCCC--cccccc-c---CCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDL-RTNS--PWSHLL-I---NHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r-~~~~--~~~~~~-~---~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+|+|||||||||||++|+++|+++|++ |++++| ++.. ...... . ..+++++++|++|.+++.++++++|+||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 79 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYS-VNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF 79 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCE-EEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence 478999999999999999999999998 999988 4321 000000 0 1257889999999999999999999999
Q ss_pred EcccCCCCchhhhch-hhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceeeCCc-cccCCCCCCCCCCCC----ccCC
Q 011770 84 HVASYGMSGKEMLQF-GRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVFGGK-EIVNGNESLPYFPID----EHVD 156 (478)
Q Consensus 84 HlAa~~~~~~~~~~~-~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~g~~-~~~~~~E~~p~~p~~----~~~~ 156 (478)
|+|+.. .....++ ...+++|+.||.+++++|.+. +++|+||+||.+++++.. ...+.+|+.+..+.. .+.+
T Consensus 80 h~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~ 157 (322)
T 2p4h_X 80 HTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFG 157 (322)
T ss_dssp ECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred EcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccc
Confidence 999743 2222222 448899999999999999998 799999999998655432 223456654321100 0112
Q ss_pred -chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHH---HHHcCCCCeeeCCCCccccceeH
Q 011770 157 -SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVS---LAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 157 -~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~---~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
+|+.||.++|++++++.. .++++++++||++||||+....++..+. ....|.... +++ ...+|+|+
T Consensus 158 ~~Y~~sK~~~e~~~~~~~~-------~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~--~~~~~i~v 227 (322)
T 2p4h_X 158 WNYAVSKTLAEKAVLEFGE-------QNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQ-IGV--TRFHMVHV 227 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGG-CCE--EEEEEEEH
T ss_pred ccHHHHHHHHHHHHHHHHH-------hcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCcc-CcC--CCcCEEEH
Confidence 699999999999988753 3689999999999999986542222221 123344322 332 33489999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHh
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSV 312 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~ 312 (478)
+|+|++++.+++. +...| .|| ++++++|+.|+++.+.+..+. ..+|...
T Consensus 228 ~Dva~a~~~~~~~-----------~~~~g-~~~-~~~~~~s~~e~~~~i~~~~~~----~~~~~~~-------------- 276 (322)
T 2p4h_X 228 DDVARAHIYLLEN-----------SVPGG-RYN-CSPFIVPIEEMSQLLSAKYPE----YQILTVD-------------- 276 (322)
T ss_dssp HHHHHHHHHHHHS-----------CCCCE-EEE-CCCEEEEHHHHHHHHHHHCTT----SCCCCTT--------------
T ss_pred HHHHHHHHHHhhC-----------cCCCC-CEE-EcCCCCCHHHHHHHHHHhCCC----CCCCCCc--------------
Confidence 9999999998862 22345 488 567889999999999887642 1122100
Q ss_pred hhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 313 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 313 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
. .. ..+ . .....+|++|+ ++|||+|+++++++|+++++|+++++
T Consensus 277 --~-~~----~~~---~------~~~~~~d~~k~-~~lG~~p~~~~~~~l~~~~~~~~~~~ 320 (322)
T 2p4h_X 277 --E-LK----EIK---G------ARLPDLNTKKL-VDAGFDFKYTIEDMFDDAIQCCKEKG 320 (322)
T ss_dssp --T-TT----TCC---C------EECCEECCHHH-HHTTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred --c-cc----CCC---C------CcceecccHHH-HHhCCccCCCHHHHHHHHHHHHHhcC
Confidence 0 00 000 0 02346899999 66999999999999999999998764
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=333.54 Aligned_cols=306 Identities=16% Similarity=0.027 Sum_probs=231.1
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc-----cCCCeEEE-EecCCCHHHHHHHhcCc
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-----INHGVHCI-QGDVVSKIDVEKAARGV 79 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~-----~~~~v~~v-~gDl~d~~~l~~~l~~~ 79 (478)
...+++|+|||||||||||++|+++|+++|++ |++++|+......... ...+++++ .+|++|.+++.++++++
T Consensus 6 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 84 (342)
T 1y1p_A 6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYK-VRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred ccCCCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCC
Confidence 34467789999999999999999999999998 9999986542110000 12568888 89999999999999999
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHH-cCCCeEEEEeccceeeCCcc---ccCCCCCCCC-------
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLE-FGIQRLVYVSTYNVVFGGKE---IVNGNESLPY------- 148 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~-~~v~r~V~~SS~~v~~g~~~---~~~~~E~~p~------- 148 (478)
|+|||+|+..... .++...+++|+.||.+++++|.+ .+++|+||+||.++|++... ..+.+|+...
T Consensus 85 d~vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 161 (342)
T 1y1p_A 85 AGVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKA 161 (342)
T ss_dssp SEEEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHH
T ss_pred CEEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhh
Confidence 9999999975432 35667899999999999999995 67899999999998644322 1455666521
Q ss_pred -----CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHHHHHcCCCCe
Q 011770 149 -----FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVSLAKLGLVPF 218 (478)
Q Consensus 149 -----~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~~~~~g~~~~ 218 (478)
.+...+.++|+.||..+|++++.+..+. ..+++++++||+.+|||+... .++.++..+..|....
T Consensus 162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T 1y1p_A 162 KTLPESDPQKSLWVYAASKTEAELAAWKFMDEN-----KPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSP 236 (342)
T ss_dssp HHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-----CCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhc-----CCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCcc
Confidence 0011234789999999999998875310 137899999999999998643 5677888888888776
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHH
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPH 298 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~ 298 (478)
+++++ +.++|+|++|+|++++.+++. +...|+.| +++|+++|+.|+++.+.+.+|.+ + +..+
T Consensus 237 ~~~~~-~~~~~v~v~Dva~a~~~~~~~-----------~~~~g~~~-~~~g~~~s~~e~~~~i~~~~~~~-~-~~~~--- 298 (342)
T 1y1p_A 237 ALALM-PPQYYVSAVDIGLLHLGCLVL-----------PQIERRRV-YGTAGTFDWNTVLATFRKLYPSK-T-FPAD--- 298 (342)
T ss_dssp HHHTC-CSEEEEEHHHHHHHHHHHHHC-----------TTCCSCEE-EECCEEECHHHHHHHHHHHCTTS-C-CCCC---
T ss_pred ccccC-CcCCEeEHHHHHHHHHHHHcC-----------cccCCceE-EEeCCCCCHHHHHHHHHHHCCCc-c-CCCC---
Confidence 66665 778999999999999999873 22345544 45678899999999999999864 1 1110
Q ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCC---CcCCChHHHHHHHHHHHH
Q 011770 299 ALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCY---VPIVSPREGMAATISYWQ 370 (478)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~---~p~~~~~e~l~~~i~~~~ 370 (478)
..+. . .....+|++|++++||| .+..+++++|+++++||+
T Consensus 299 ------------------------~~~~-~-------~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 299 ------------------------FPDQ-G-------QDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp ------------------------CCCC-C-------CCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred ------------------------CCcc-c-------cccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 0000 0 01246799999999987 577789999999999875
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=329.74 Aligned_cols=293 Identities=16% Similarity=0.099 Sum_probs=215.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
+|+|||||||||||++|+++|+++|++ |++++|+.... +.+.+|+.|. +.++++++|+|||||+...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~-V~~l~R~~~~~----------~~v~~d~~~~--~~~~l~~~D~Vih~A~~~~ 213 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHE-VIQLVRKEPKP----------GKRFWDPLNP--ASDLLDGADVLVHLAGEPI 213 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSSCCT----------TCEECCTTSC--CTTTTTTCSEEEECCCC--
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCCc----------cceeecccch--hHHhcCCCCEEEECCCCcc
Confidence 689999999999999999999999998 99999986631 1267888753 4667789999999999753
Q ss_pred Cch-hhhchhhhhHhhhHHHHHHHHH-HHHcCCCeEEEEeccceeeC-CccccCCCCCCCCCCCCccCCchHhhHHHHHH
Q 011770 91 SGK-EMLQFGRVDEVNINGTCHVIEA-CLEFGIQRLVYVSTYNVVFG-GKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 91 ~~~-~~~~~~~~~~vNv~gt~nll~a-a~~~~v~r~V~~SS~~v~~g-~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~ 167 (478)
... ...++..++++|+.||.+++++ |++.++++|||+||.+| || .....+.+|+.+. |. +.|+.+|...|+
T Consensus 214 ~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~v-yg~~~~~~~~~E~~~~-~~----~~y~~~~~~~E~ 287 (516)
T 3oh8_A 214 FGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGF-YGHDRGDEILTEESES-GD----DFLAEVCRDWEH 287 (516)
T ss_dssp ---CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGG-GCSEEEEEEECTTSCC-CS----SHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceE-ecCCCCCCccCCCCCC-Cc----ChHHHHHHHHHH
Confidence 321 2345677889999999999999 67778999999999998 45 4555677888776 33 789999999998
Q ss_pred HHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhccc
Q 011770 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLL 247 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~ 247 (478)
++..+. ..|++++++||+.||||+. +.++.+...+..|... .+|++++.++|||++|+|++++.+++.
T Consensus 288 ~~~~~~--------~~gi~~~ilRp~~v~Gp~~-~~~~~~~~~~~~g~~~-~~g~g~~~~~~i~v~Dva~ai~~~l~~-- 355 (516)
T 3oh8_A 288 ATAPAS--------DAGKRVAFIRTGVALSGRG-GMLPLLKTLFSTGLGG-KFGDGTSWFSWIAIDDLTDIYYRAIVD-- 355 (516)
T ss_dssp TTHHHH--------HTTCEEEEEEECEEEBTTB-SHHHHHHHTTC---CC-CCTTSCCEECEEEHHHHHHHHHHHHHC--
T ss_pred HHHHHH--------hCCCCEEEEEeeEEECCCC-ChHHHHHHHHHhCCCc-ccCCCCceEceEeHHHHHHHHHHHHhC--
Confidence 876553 4689999999999999985 5667777666666644 679999999999999999999999973
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCC
Q 011770 248 DDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLI 327 (478)
Q Consensus 248 ~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~ 327 (478)
+. .+++||+++++++|+.|+++.+.+.+|.+. .+.+|.+..... ++ ..
T Consensus 356 ---------~~-~~g~~ni~~~~~~s~~el~~~i~~~~g~~~-~~~~p~~~~~~~----------~g---------~~-- 403 (516)
T 3oh8_A 356 ---------AQ-ISGPINAVAPNPVSNADMTKILATSMHRPA-FIQIPSLGPKIL----------LG---------SQ-- 403 (516)
T ss_dssp ---------TT-CCEEEEESCSCCEEHHHHHHHTTC-----------------------------------------C--
T ss_pred ---------cc-cCCcEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCHHHHHHH----------hC---------Cc--
Confidence 22 345899999999999999999999999764 444554432210 00 00
Q ss_pred cHHHhhhhcceeEechHhHHHhCCCCcCCC-hHHHHHHHHHHH
Q 011770 328 LPAEVYKVGVTHYFSLLKAKDELCYVPIVS-PREGMAATISYW 369 (478)
Q Consensus 328 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~-~~e~l~~~i~~~ 369 (478)
.....+..+...+++|++ +|||+|+++ ++++|+++++..
T Consensus 404 --~~~~~~~~~~~~~~~kl~-~lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 404 --GAEELALASQRTAPAALE-NLSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp --CGGGGGGCEEEECCHHHH-HTTCCCSCSSHHHHHHHHHTCC
T ss_pred --hhHHHhhcCCeechHHHH-HCCCCCCCCCHHHHHHHHhCcc
Confidence 001122334567889998 599999986 999999998754
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=296.05 Aligned_cols=269 Identities=17% Similarity=0.078 Sum_probs=212.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC--cCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG--VDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViHlAa~~ 89 (478)
|+|||||||||||++++++|+ +|++ |++++|++... ++ +.+|++|.+++.+++++ +|+|||+|+..
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~-V~~~~r~~~~~-------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~ 68 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHE-VIKVYNSSEIQ-------GG---YKLDLTDFPRLEDFIIKKRPDVIINAAAMT 68 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSC-EEEEESSSCCT-------TC---EECCTTSHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCe-EEEecCCCcCC-------CC---ceeccCCHHHHHHHHHhcCCCEEEECCccc
Confidence 479999999999999999999 5888 99999876421 22 78999999999999986 99999999975
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
....+..++...+++|+.++.+++++|++.++ ++||+||.++| ++.. .+.+|+.+..|. +.|+.+|..+|+++
T Consensus 69 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~-~~~~-~~~~e~~~~~~~----~~Y~~sK~~~e~~~ 141 (273)
T 2ggs_A 69 DVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVF-DGEK-GNYKEEDIPNPI----NYYGLSKLLGETFA 141 (273)
T ss_dssp CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGS-CSSS-CSBCTTSCCCCS----SHHHHHHHHHHHHH
T ss_pred ChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeE-cCCC-CCcCCCCCCCCC----CHHHHHHHHHHHHH
Confidence 54434456788999999999999999999987 99999999995 4332 267888776664 78999999999988
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
+. ++++++||+.||| +..+...++..+..+..+...++ .++++|++|+|++++.+++.
T Consensus 142 ~~-------------~~~~~iR~~~v~G--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~---- 199 (273)
T 2ggs_A 142 LQ-------------DDSLIIRTSGIFR--NKGFPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLEL---- 199 (273)
T ss_dssp CC-------------TTCEEEEECCCBS--SSSHHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHH----
T ss_pred hC-------------CCeEEEecccccc--ccHHHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhc----
Confidence 53 4578999999998 34455666677777877666654 78999999999999999873
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
.. +++||+++ +++|+.|+++.+.+.+|.+.+... |.+. . . ..+.
T Consensus 200 --------~~-~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~-~~~~-------------------~-~--~~~~--- 243 (273)
T 2ggs_A 200 --------RK-TGIIHVAG-ERISRFELALKIKEKFNLPGEVKE-VDEV-------------------R-G--WIAK--- 243 (273)
T ss_dssp --------TC-CEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEE-ESSC-------------------T-T--CCSC---
T ss_pred --------Cc-CCeEEECC-CcccHHHHHHHHHHHhCCChhhcc-cccc-------------------c-c--cccC---
Confidence 12 45999999 999999999999999998755321 1100 0 0 0000
Q ss_pred HHhhhhcceeEechHhHHHhCCCCc-CCChHHHH
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVP-IVSPREGM 362 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p-~~~~~e~l 362 (478)
...+..+|++|++++|||+| ..++++++
T Consensus 244 -----~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 244 -----RPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp -----CCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred -----CCcccccCHHHHHHHhCCCCCCccccccc
Confidence 01234689999999999999 67898875
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=317.11 Aligned_cols=319 Identities=17% Similarity=0.113 Sum_probs=232.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----------------ccccCCCeEEEEecCCCHH
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----------------HLLINHGVHCIQGDVVSKI 70 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----------------~~~~~~~v~~v~gDl~d~~ 70 (478)
....+|+|||||||||||++|+++|.+.|++ |++++|++..... ......+++++.+|++|.+
T Consensus 65 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 65 SHRPLGNTLLTGATGFLGAYLIEALQGYSHR-IYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp CCCCCEEEEEECTTSHHHHHHHHHHTTTEEE-EEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHcCCCE-EEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 3456789999999999999999999999998 9999998662100 0112468999999999988
Q ss_pred HHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce--eeC-CccccCCCCCCC
Q 011770 71 DVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV--VFG-GKEIVNGNESLP 147 (478)
Q Consensus 71 ~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v--~~g-~~~~~~~~E~~p 147 (478)
++. .+.++|+|||+||.... ..++...+++|+.||.+++++|.+ ++++|||+||.++ +.. .....+.+|+.+
T Consensus 144 ~l~-~~~~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~G~~~~~~~~~~~~~E~~~ 218 (427)
T 4f6c_A 144 DVV-LPENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISVGTYFDIDTEDVTFSEADV 218 (427)
T ss_dssp CCC-CSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGGGSEECSSCSCCEECTTCS
T ss_pred cCC-CcCCCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHhCCCccCCCCCcccccccc
Confidence 888 77899999999997532 235678899999999999999999 7899999999998 111 123456677776
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---------HHHHHHHHHcCCCCe
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---------LPRIVSLAKLGLVPF 218 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---------~~~~i~~~~~g~~~~ 218 (478)
..+.. +.+.|+.||.++|++++++. ..|++++++||+.||||+.... ++.++..+..+..+.
T Consensus 219 ~~~~~-~~~~Y~~sK~~~E~~~~~~~--------~~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (427)
T 4f6c_A 219 YKGQL-LTSPYTRSKFYSELKVLEAV--------NNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIG 289 (427)
T ss_dssp CSSCC-CCSHHHHHHHHHHHHHHHHH--------HTTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEE
T ss_pred ccCCC-CCCchHHHHHHHHHHHHHHH--------HcCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCC
Confidence 44322 35899999999999999875 3689999999999999987643 667777776665443
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHH
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPH 298 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~ 298 (478)
.++++..++|+|++|+|++++.++.. +. .|++||+++++++++.|+++.+.+ +| .+.+..+.|.
T Consensus 290 -~~~~~~~~~~v~v~DvA~ai~~~~~~-----------~~-~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~ 353 (427)
T 4f6c_A 290 -VSMAEMPVDFSFVDTTARQIVALAQV-----------NT-PQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFN 353 (427)
T ss_dssp -HHHHTCEECCEEHHHHHHHHHHHTTS-----------CC-CCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHH
T ss_pred -CccccceEEEeeHHHHHHHHHHHHcC-----------CC-CCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHH
Confidence 34568899999999999999998862 23 788999999999999999999998 66 4444444444
Q ss_pred HHHHHH-HHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHH---HhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 299 ALFLGK-VFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAK---DELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 299 ~~~~a~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~---~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
..+... +.++.. +. ..........+|+++.+ +++||++....++.++++++|+++...
T Consensus 354 ~~l~~~~~~~~~~-~~-----------------~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~ 415 (427)
T 4f6c_A 354 EILQKQDMYETIG-LT-----------------SVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 415 (427)
T ss_dssp HHHHHTTCHHHHH-HH-----------------HHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCchhhhh-hh-----------------hccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 333221 000000 00 00011224567887776 567999888677799999999987643
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=291.15 Aligned_cols=279 Identities=13% Similarity=0.081 Sum_probs=212.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
|+|||||||||||++++++|+++ |++ |++++|++... ......+++++.+|++|.+++.++++++|+|||+|+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~--~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~ 77 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQ-IIAIVRNVEKA--STLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPH 77 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGG-EEEEESCTTTT--HHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCe-EEEEEcCHHHH--hHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCC
Confidence 47999999999999999999998 998 99999876532 11223578999999999999999999999999999852
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
. . .++|+.++.+++++|++.+++|+||+||.+++ . .| .+|+.+|..+|+++
T Consensus 78 ~-~---------~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~-~-------------~~-----~~y~~~K~~~E~~~ 128 (287)
T 2jl1_A 78 Y-D---------NTLLIVQHANVVKAARDAGVKHIAYTGYAFAE-E-------------SI-----IPLAHVHLATEYAI 128 (287)
T ss_dssp S-C---------HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGG-G-------------CC-----STHHHHHHHHHHHH
T ss_pred c-C---------chHHHHHHHHHHHHHHHcCCCEEEEECCCCCC-C-------------CC-----CchHHHHHHHHHHH
Confidence 1 0 16799999999999999999999999998873 1 01 36999999999998
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
++ .+++++++||+.++|+.....+. ..+..+.. ..+.++..++|+|++|+|++++.+++.
T Consensus 129 ~~-----------~~~~~~ilrp~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~i~~~Dva~~~~~~~~~---- 188 (287)
T 2jl1_A 129 RT-----------TNIPYTFLRNALYTDFFVNEGLR---ASTESGAI--VTNAGSGIVNSVTRNELALAAATVLTE---- 188 (287)
T ss_dssp HH-----------TTCCEEEEEECCBHHHHSSGGGH---HHHHHTEE--EESCTTCCBCCBCHHHHHHHHHHHHTS----
T ss_pred HH-----------cCCCeEEEECCEeccccchhhHH---HHhhCCce--eccCCCCccCccCHHHHHHHHHHHhcC----
Confidence 64 47899999999988875333332 23334543 355667889999999999999999872
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCC-Cc
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPL-IL 328 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~-~~ 328 (478)
+...|++||+++++++|+.|+++.+.+.+|.+.+...+|...+....... ..|. ..
T Consensus 189 -------~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 245 (287)
T 2jl1_A 189 -------EGHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNA----------------GVPEPFT 245 (287)
T ss_dssp -------SSCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHT----------------TCCHHHH
T ss_pred -------CCCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhC----------------CCCHHHH
Confidence 23468899999999999999999999999998777777865443221100 0000 00
Q ss_pred H---HHhhhh-cceeEechHhHHHhCCCCcCCChHHHHHHHHH
Q 011770 329 P---AEVYKV-GVTHYFSLLKAKDELCYVPIVSPREGMAATIS 367 (478)
Q Consensus 329 ~---~~~~~~-~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~ 367 (478)
. ...... .....+|++|++++|| |.++++|+++++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 246 EITAAIYDAISKGEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp HHHHHHHHHHHTTTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 0 000000 0123468899999999 77889999999875
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=311.16 Aligned_cols=277 Identities=22% Similarity=0.221 Sum_probs=212.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc---CCceEEEEecCCCCccc-----c--------------cccCCCeEEEEec
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRR---GAYQVRAFDLRTNSPWS-----H--------------LLINHGVHCIQGD 65 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~---G~~~V~~l~r~~~~~~~-----~--------------~~~~~~v~~v~gD 65 (478)
..++|+|||||||||||++|+++|+++ |++ |++++|+...... . .....+++++.+|
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~-V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 148 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGR-LICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD 148 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCE-EEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCE-EEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence 356889999999999999999999999 898 9999997653210 0 0113689999999
Q ss_pred CC------CHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccc
Q 011770 66 VV------SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEI 139 (478)
Q Consensus 66 l~------d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~ 139 (478)
++ |.+++.++++++|+|||+|+.... .++...+++|+.||.+++++|.+.++++|||+||.+| |+....
T Consensus 149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v-~~~~~~ 223 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADV-GAAIEP 223 (478)
T ss_dssp TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGG-GTTSCT
T ss_pred CCCcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhh-cCccCC
Confidence 98 777899999999999999997543 3456788999999999999999999999999999998 555555
Q ss_pred cCCCCCCCCCCCC-------ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC-------CCcHH
Q 011770 140 VNGNESLPYFPID-------EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE-------ERHLP 205 (478)
Q Consensus 140 ~~~~E~~p~~p~~-------~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~-------~~~~~ 205 (478)
.+.+|+.+..|.. ...+.|+.||..+|++++++.. ..+++++++||++|||++. ..++.
T Consensus 224 ~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-------~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~ 296 (478)
T 4dqv_A 224 SAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREAND-------LCALPVAVFRCGMILADTSYAGQLNMSDWVT 296 (478)
T ss_dssp TTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHH-------HHCCCEEEEEECEEECCSSSSSCCCTTBHHH
T ss_pred CCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHH-------HhCCCeEEEECceeeCCCccCCcCCHHHHHH
Confidence 6677776654321 1124599999999999998863 3589999999999999864 12455
Q ss_pred HHHHHH-HcCCCCe-eeC---C---CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC--CCHH
Q 011770 206 RIVSLA-KLGLVPF-KIG---E---PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP--INTF 275 (478)
Q Consensus 206 ~~i~~~-~~g~~~~-~~g---~---g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~--~s~~ 275 (478)
+++... ..|..+. +++ + +++.++|+||+|+|++++.++..... .+...+++||++++++ +++.
T Consensus 297 ~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~-------~~~~~~~~ynv~~~~~~~~s~~ 369 (478)
T 4dqv_A 297 RMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAG-------SSLAGFATYHVMNPHDDGIGLD 369 (478)
T ss_dssp HHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC--------CCCCSEEEEEESCCCCSSCSHH
T ss_pred HHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhccc-------CCCCCCceEEecCCCCCCcCHH
Confidence 555543 3344321 121 1 26789999999999999999873211 1345678999999988 9999
Q ss_pred HHHHHHHHhcCCCCCcc-cCChHHHHHHHHH
Q 011770 276 EFIGPLLKTLDYDLPKS-WLAVPHALFLGKV 305 (478)
Q Consensus 276 e~~~~i~~~lg~~~~~~-~lp~~~~~~~a~~ 305 (478)
|+++.+.+. |.+.+.+ .+|.|+..+.+.+
T Consensus 370 el~~~l~~~-g~~~~~i~~~~~w~~~l~~~~ 399 (478)
T 4dqv_A 370 EYVDWLIEA-GYPIRRIDDFAEWLQRFEASL 399 (478)
T ss_dssp HHHHHHHHT-TCSCEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcccCCCHHHHHHHHHHHh
Confidence 999999995 8776655 5777877666554
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=317.03 Aligned_cols=315 Identities=17% Similarity=0.108 Sum_probs=231.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----------------ccccCCCeEEEEecCCCHHHHH
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----------------HLLINHGVHCIQGDVVSKIDVE 73 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----------------~~~~~~~v~~v~gDl~d~~~l~ 73 (478)
.+|+|||||||||||++|+++|.++|++ |++++|+...... ......+++++.+|++|.+.+.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~-V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHR-IYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEE-EEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCE-EEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence 4579999999999999999999988998 9999998662100 0123468999999999987777
Q ss_pred HHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce--eeCC-ccccCCCCCCCCCC
Q 011770 74 KAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV--VFGG-KEIVNGNESLPYFP 150 (478)
Q Consensus 74 ~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v--~~g~-~~~~~~~E~~p~~p 150 (478)
+..++|+|||+|+.... ..++....++|+.||.+++++|.+ +++++||+||.+| +.+. ....+.+|+++..+
T Consensus 228 -~~~~~D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~vG~~~~~~~~~~~~~E~~~~~~ 302 (508)
T 4f6l_B 228 -LPENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISVGTYFDIDTEDVTFSEADVYKG 302 (508)
T ss_dssp -CSSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCTTSEECTTCSCCEECTTCSCSS
T ss_pred -CccCCCEEEECCceecC---CCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhhccCCccCCcCccccccccccc
Confidence 77899999999996532 235677889999999999999999 7789999999998 2221 23445677776443
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---------HHHHHHHHHcCCCCeeeC
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---------LPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---------~~~~i~~~~~g~~~~~~g 221 (478)
.. +.+.|+.||..+|++++++. ..|++++++||+.||||+.... ++.++..+..+... ..+
T Consensus 303 ~~-~~~~Y~~sK~~~E~~~~~~~--------~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~ 372 (508)
T 4f6l_B 303 QL-LTSPYTRSKFYSELKVLEAV--------NNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCI-GVS 372 (508)
T ss_dssp BC-CCSHHHHHHHHHHHHHHHHH--------HTTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEE-ETT
T ss_pred cc-CCCcHHHHHHHHHHHHHHHH--------HcCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCC-CCC
Confidence 22 35889999999999999875 3689999999999999987543 66777777665543 235
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHH
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALF 301 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~ 301 (478)
++++.++|+||+|+|++++.++.. +. .+++||+++++++++.|+++.+.+.. .+.+..|.|...+
T Consensus 373 ~g~~~~~~v~v~DvA~ai~~~~~~-----------~~-~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~l 437 (508)
T 4f6l_B 373 MAEMPVDFSFVDTTARQIVALAQV-----------NT-PQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEIL 437 (508)
T ss_dssp GGGSEEECEEHHHHHHHHHHHTTB-----------CC-SCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHHH
T ss_pred ccCceEEEEcHHHHHHHHHHHHhC-----------CC-CCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHHH
Confidence 568899999999999999999863 22 68899999999999999999999865 3444455554332
Q ss_pred HHH-HHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHH---HhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 302 LGK-VFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAK---DELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 302 ~a~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~---~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
... +.+++.... .........+|+++.+ +++||.+....++.+++.++|+++.-
T Consensus 438 ~~~~~~~~~~~~~------------------~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~ 495 (508)
T 4f6l_B 438 QKQDMYETIGLTS------------------VDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIF 495 (508)
T ss_dssp HTTCCHHHHHHHH------------------TGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCCccchhccc------------------ccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 211 001110000 0012234567877766 56799988877889999999998753
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=287.54 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=204.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
+|||||||||||++++++|+++ |++ |++++|++... ......+++++.+|++|.+++.++++++|+|||+|+...
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~--~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~ 77 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQ-IVAIVRNPAKA--QALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEV 77 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGG-EEEEESCTTTC--HHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC----
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCce-EEEEEcChHhh--hhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCc
Confidence 5899999999999999999998 998 99999876532 112235789999999999999999999999999998421
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
+.|+.++.+++++|++.+++++||+||.+++ . .| .+|+.+|..+|++++
T Consensus 78 ------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~-~-------------~~-----~~y~~sK~~~e~~~~ 126 (286)
T 2zcu_A 78 ------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHAD-T-------------SP-----LGLADEHIETEKMLA 126 (286)
T ss_dssp ----------------CHHHHHHHHHHHHTCCEEEEEEETTTT-T-------------CC-----STTHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCC-C-------------Cc-----chhHHHHHHHHHHHH
Confidence 1488999999999999999999999998873 1 01 469999999999986
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~ 250 (478)
+ .+++++++||+.++|+.. ..+. +....+. . ..+++++.++|+|++|+|++++.+++.
T Consensus 127 ~-----------~~~~~~ilrp~~~~~~~~-~~~~---~~~~~~~-~-~~~~~~~~~~~i~~~Dva~~~~~~~~~----- 184 (286)
T 2zcu_A 127 D-----------SGIVYTLLRNGWYSENYL-ASAP---AALEHGV-F-IGAAGDGKIASATRADYAAAAARVISE----- 184 (286)
T ss_dssp H-----------HCSEEEEEEECCBHHHHH-TTHH---HHHHHTE-E-EESCTTCCBCCBCHHHHHHHHHHHHHS-----
T ss_pred H-----------cCCCeEEEeChHHhhhhH-HHhH---HhhcCCc-e-eccCCCCccccccHHHHHHHHHHHhcC-----
Confidence 4 478999999987665432 2222 2333443 2 366778899999999999999999872
Q ss_pred CCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHH---HHHHHHHhhhhccccccCCCCCC
Q 011770 251 PGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGK---VFSFFYSVLYPWLNRWWLPQPLI 327 (478)
Q Consensus 251 ~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~p~~ 327 (478)
+...|++||+++++++|+.|+++.+.+.+|.+.+...+|.+.+..... ..+.....
T Consensus 185 ------~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 243 (286)
T 2zcu_A 185 ------AGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADM--------------- 243 (286)
T ss_dssp ------SSCTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHH---------------
T ss_pred ------CCCCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHH---------------
Confidence 234688999999999999999999999999987777788765432210 00000000
Q ss_pred cHHHhhhhcc-eeEechHhHHHhCCCCcCCChHHHHHHHHHHHH
Q 011770 328 LPAEVYKVGV-THYFSLLKAKDELCYVPIVSPREGMAATISYWQ 370 (478)
Q Consensus 328 ~~~~~~~~~~-~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~ 370 (478)
.......... ...+|++|++++||| |..+++|+++++++||.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~lg~-~~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 244 LADSDVGASKGGLFDDSKTLSKLIGH-PTTTLAESVSHLFNVNN 286 (286)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHHTS-CCCCHHHHHHGGGC---
T ss_pred HHHHHHHHhCCCCccCchHHHHHhCc-CCCCHHHHHHHHHhhcC
Confidence 0000001111 134688999999997 66689999999999874
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=275.74 Aligned_cols=222 Identities=20% Similarity=0.147 Sum_probs=175.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
||+|||||||||||++|+++|+++|++ |++++|++... .....+++++++|++|.+++.++++++|+|||+|+...
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~ 79 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFE-VTAVVRHPEKI---KIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGW 79 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCE-EEEECSCGGGC---CCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC--
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEEcCcccc---hhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCC
Confidence 579999999999999999999999998 99999976532 11237899999999999999999999999999998532
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
. ....+++|+.++.+++++|++.+++|+||+||.+++++.+.. ..|+.+..|. +.|+.+|..+|+++.
T Consensus 80 ~------~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~--~~~~~~~~p~----~~Y~~sK~~~e~~~~ 147 (227)
T 3dhn_A 80 N------NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGL--RLMDSGEVPE----NILPGVKALGEFYLN 147 (227)
T ss_dssp ----------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTE--EGGGTTCSCG----GGHHHHHHHHHHHHH
T ss_pred C------ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCC--ccccCCcchH----HHHHHHHHHHHHHHH
Confidence 1 123788999999999999999999999999999986554322 2345555554 789999999999888
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCC-CCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGL-VPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~-~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
.+.. ..+++++++||+.+|||++.... ...+. .+...+++ ++|+|++|+|++++.+++
T Consensus 148 ~~~~-------~~~~~~~ilrp~~v~g~~~~~~~------~~~~~~~~~~~~~~---~~~i~~~Dva~ai~~~l~----- 206 (227)
T 3dhn_A 148 FLMK-------EKEIDWVFFSPAADMRPGVRTGR------YRLGKDDMIVDIVG---NSHISVEDYAAAMIDELE----- 206 (227)
T ss_dssp TGGG-------CCSSEEEEEECCSEEESCCCCCC------CEEESSBCCCCTTS---CCEEEHHHHHHHHHHHHH-----
T ss_pred HHhh-------ccCccEEEEeCCcccCCCccccc------eeecCCCcccCCCC---CcEEeHHHHHHHHHHHHh-----
Confidence 7763 47999999999999999865311 11222 22222322 899999999999999998
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTF 275 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~ 275 (478)
.+...|++|+++++++.++.
T Consensus 207 ------~~~~~g~~~~~~~~~~~~~~ 226 (227)
T 3dhn_A 207 ------HPKHHQERFTIGYLEHHHHH 226 (227)
T ss_dssp ------SCCCCSEEEEEECCSCCC--
T ss_pred ------CccccCcEEEEEeehhcccC
Confidence 44678999999999998764
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=280.41 Aligned_cols=237 Identities=19% Similarity=0.218 Sum_probs=191.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
||+|||||||||||++|+++|+++|++ |++++|++... ...+++++.+|++|.+++.++++++|+|||+|+...
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~ 75 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHE-VRLSDIVDLGA-----AEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGVSV 75 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEE-EEECCSSCCCC-----CCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSCCS
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCE-EEEEeCCCccc-----cCCCccEEEccCCCHHHHHHHHcCCCEEEECCcCCC
Confidence 468999999999999999999999998 99999976532 124688999999999999999999999999999642
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
..+....+++|+.++.+++++|++.+++++||+||..+|.......+.+|+.|..|. +.|+.||..+|++++
T Consensus 76 ----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~----~~Y~~sK~~~e~~~~ 147 (267)
T 3ay3_A 76 ----ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPD----SLYGLSKCFGEDLAS 147 (267)
T ss_dssp ----CCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCC----SHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCC----ChHHHHHHHHHHHHH
Confidence 234467889999999999999999999999999999985333344678888887665 789999999999998
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~ 250 (478)
.+.. ..+++++++||+.+|+... +++..++|+|++|+|++++.+++.
T Consensus 148 ~~~~-------~~gi~~~~lrp~~v~~~~~---------------------~~~~~~~~~~~~dva~~~~~~~~~----- 194 (267)
T 3ay3_A 148 LYYH-------KFDIETLNIRIGSCFPKPK---------------------DARMMATWLSVDDFMRLMKRAFVA----- 194 (267)
T ss_dssp HHHH-------TTCCCEEEEEECBCSSSCC---------------------SHHHHHHBCCHHHHHHHHHHHHHS-----
T ss_pred HHHH-------HcCCCEEEEeceeecCCCC---------------------CCCeeeccccHHHHHHHHHHHHhC-----
Confidence 7753 4689999999999995311 223467899999999999999873
Q ss_pred CCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHH
Q 011770 251 PGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPA 330 (478)
Q Consensus 251 ~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~ 330 (478)
+...+++||+.++...+
T Consensus 195 ------~~~~~~~~~~~~~~~~~--------------------------------------------------------- 211 (267)
T 3ay3_A 195 ------PKLGCTVVYGASANTES--------------------------------------------------------- 211 (267)
T ss_dssp ------SCCCEEEEEECCSCSSC---------------------------------------------------------
T ss_pred ------CCCCceeEecCCCcccc---------------------------------------------------------
Confidence 22234677775432110
Q ss_pred HhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHH
Q 011770 331 EVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATIS 367 (478)
Q Consensus 331 ~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~ 367 (478)
..|..|+ +.|||+|+++++++++++.+
T Consensus 212 ---------~~d~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 212 ---------WWDNDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp ---------CBCCGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred ---------ccCHHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 2467777 88999999999999988754
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=285.93 Aligned_cols=239 Identities=19% Similarity=0.245 Sum_probs=196.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc-CC-ceEEEEecCCCCccc--ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRR-GA-YQVRAFDLRTNSPWS--HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~-G~-~~V~~l~r~~~~~~~--~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
+++|+|||||||||||++|+++|+++ |+ + |++++|++..... ......+++++.+|++|.+++.++++++|+|||
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~-V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 97 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKK-IIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH 97 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSE-EEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCE-EEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence 56789999999999999999999999 98 6 9999986542110 011235799999999999999999999999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~ 164 (478)
+||....+....++...+++|+.||.|++++|.+.+++++|++||..++ .| .++|+.||.+
T Consensus 98 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~---------------~p----~~~Y~~sK~~ 158 (344)
T 2gn4_A 98 AAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA---------------NP----INLYGATKLC 158 (344)
T ss_dssp CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS---------------SC----CSHHHHHHHH
T ss_pred CCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC---------------CC----ccHHHHHHHH
Confidence 9997654444556778999999999999999999999999999997652 12 2689999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCC-CCeeeCCCCccccceeHHHHHHHHHHHH
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGL-VPFKIGEPSVKTDWIYVDNLVLALILAS 243 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~-~~~~~g~g~~~~~~v~V~Dva~a~~~a~ 243 (478)
+|+++..+... + +..+++++++||++||||+. ..++.+++.+..|. .+. ..+++..++|+|++|+|++++.++
T Consensus 159 ~E~~~~~~~~~-~---~~~g~~~~~vRpg~v~g~~~-~~i~~~~~~~~~g~~~~~-i~~~~~~r~~i~v~D~a~~v~~~l 232 (344)
T 2gn4_A 159 SDKLFVSANNF-K---GSSQTQFSVVRYGNVVGSRG-SVVPFFKKLVQNKASEIP-ITDIRMTRFWITLDEGVSFVLKSL 232 (344)
T ss_dssp HHHHHHHGGGC-C---CSSCCEEEEECCCEETTCTT-SHHHHHHHHHHHTCCCEE-ESCTTCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-h---CCCCcEEEEEEeccEECCCC-CHHHHHHHHHHcCCCceE-EeCCCeEEeeEEHHHHHHHHHHHH
Confidence 99999887631 1 13689999999999999975 46788888888887 443 457888899999999999999998
Q ss_pred hcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcC
Q 011770 244 MGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLD 286 (478)
Q Consensus 244 ~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg 286 (478)
+. ...|++||++++ ++++.|+++.+.+.++
T Consensus 233 ~~------------~~~g~~~~~~~~-~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 233 KR------------MHGGEIFVPKIP-SMKMTDLAKALAPNTP 262 (344)
T ss_dssp HH------------CCSSCEEEECCC-EEEHHHHHHHHCTTCC
T ss_pred hh------------ccCCCEEecCCC-cEEHHHHHHHHHHhCC
Confidence 74 235789998765 6999999999987654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=275.67 Aligned_cols=238 Identities=16% Similarity=0.083 Sum_probs=188.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc--CcCE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR--GVDC 81 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ 81 (478)
|.+|+|||||||||||++|+++|+++|++ |++++|+++..... .....+++++.+|++|.+++.++++ ++|+
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~-V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 86 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRP-TYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDI 86 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCC-EEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCE
Confidence 55679999999999999999999999998 99999986321111 1234689999999999999999999 9999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHh
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGR 160 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~ 160 (478)
|||+|+. .|+.++.+++++|++.| +++||+ |+ ||. +.+|..+..|. +.|+.
T Consensus 87 Vi~~a~~---------------~n~~~~~~l~~aa~~~g~v~~~v~-S~----~g~----~~~e~~~~~p~----~~y~~ 138 (346)
T 3i6i_A 87 VVSTVGG---------------ESILDQIALVKAMKAVGTIKRFLP-SE----FGH----DVNRADPVEPG----LNMYR 138 (346)
T ss_dssp EEECCCG---------------GGGGGHHHHHHHHHHHCCCSEEEC-SC----CSS----CTTTCCCCTTH----HHHHH
T ss_pred EEECCch---------------hhHHHHHHHHHHHHHcCCceEEee-cc----cCC----CCCccCcCCCc----chHHH
Confidence 9999984 28899999999999999 999986 43 332 24566555554 78999
Q ss_pred hHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHH
Q 011770 161 SKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240 (478)
Q Consensus 161 sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~ 240 (478)
+|..+|+++++ .+++++++||+.+||........... ....+....++|+++..++|+|++|+|++++
T Consensus 139 sK~~~e~~l~~-----------~g~~~tivrpg~~~g~~~~~~~~~~~-~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~ 206 (346)
T 3i6i_A 139 EKRRVRQLVEE-----------SGIPFTYICCNSIASWPYYNNIHPSE-VLPPTDFFQIYGDGNVKAYFVAGTDIGKFTM 206 (346)
T ss_dssp HHHHHHHHHHH-----------TTCCBEEEECCEESSCCCSCC------CCCCSSCEEEETTSCCCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------cCCCEEEEEecccccccCcccccccc-ccCCCceEEEccCCCceEEecCHHHHHHHHH
Confidence 99999999975 46899999999999986544322111 1224445668899999999999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCceEEecC-CCCCCHHHHHHHHHHhcCCCCCcccCChHH
Q 011770 241 LASMGLLDDIPGQKGRPIASGQPYFVSD-GFPINTFEFIGPLLKTLDYDLPKSWLAVPH 298 (478)
Q Consensus 241 ~a~~~l~~~~~~~~~~~~~~g~~yni~~-g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~ 298 (478)
.+++ .+...+++||+++ ++.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 207 ~~l~-----------~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 254 (346)
T 3i6i_A 207 KTVD-----------DVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDD 254 (346)
T ss_dssp HHTT-----------CGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHH
T ss_pred HHHh-----------CccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHH
Confidence 9987 3345578999975 689999999999999999998877777653
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=287.38 Aligned_cols=212 Identities=17% Similarity=0.148 Sum_probs=183.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
|+|||||||||||++|+++|+++|+ + |+++||+ +|.+++.++++++|+|||+|+...
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~-v~~~d~~---------------------~d~~~l~~~~~~~d~Vih~a~~~~ 58 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHH-IFEVHRQ---------------------TKEEELESALLKADFIVHLAGVNR 58 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCE-EEECCTT---------------------CCHHHHHHHHHHCSEEEECCCSBC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCE-EEEECCC---------------------CCHHHHHHHhccCCEEEECCcCCC
Confidence 5899999999999999999999998 7 8888764 678899999999999999999643
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
. .++...+++|+.++.+++++|++.+++ ++||+||..++ + .++|+.+|..+|+++
T Consensus 59 ~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~-~-------------------~~~Y~~sK~~~E~~~ 114 (369)
T 3st7_A 59 P----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQAT-Q-------------------DNPYGESKLQGEQLL 114 (369)
T ss_dssp T----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGG-S-------------------CSHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhc-C-------------------CCCchHHHHHHHHHH
Confidence 2 245678899999999999999999988 99999999984 2 167999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCC----CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhc
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE----RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMG 245 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~----~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~ 245 (478)
+++.. ..+++++++||+++|||++. +.++.++..+..|..+. ++++++.++|+|++|+|++++.+++.
T Consensus 115 ~~~~~-------~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~Dva~~~~~~l~~ 186 (369)
T 3st7_A 115 REYAE-------EYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQ-VNDRNVELTLNYVDDIVAEIKRAIEG 186 (369)
T ss_dssp HHHHH-------HHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCC-CSCTTCEEEEEEHHHHHHHHHHHHHT
T ss_pred HHHHH-------HhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeE-ecCCCeEEEEEEHHHHHHHHHHHHhC
Confidence 98764 46899999999999999864 46788888888888764 46889999999999999999999983
Q ss_pred ccCCCCCCCCCCCCC-CceEEecCCCCCCHHHHHHHHHHhcCCC
Q 011770 246 LLDDIPGQKGRPIAS-GQPYFVSDGFPINTFEFIGPLLKTLDYD 288 (478)
Q Consensus 246 l~~~~~~~~~~~~~~-g~~yni~~g~~~s~~e~~~~i~~~lg~~ 288 (478)
+... +++||+++++++|+.|+++.+.+.+|.+
T Consensus 187 -----------~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~ 219 (369)
T 3st7_A 187 -----------TPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSR 219 (369)
T ss_dssp -----------CCCEETTEECCSCCEEEEHHHHHHHHHHHHHHH
T ss_pred -----------CcccCCceEEeCCCCceeHHHHHHHHHHHhCCC
Confidence 2222 7899999999999999999999998865
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=268.80 Aligned_cols=227 Identities=20% Similarity=0.217 Sum_probs=188.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
+||+||||||+|+||++|+++|+++|++ |++++|++... ...+++++.+|++|.+++.++++++|+|||+||..
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~-V~~~~r~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~ 75 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEI-LRLADLSPLDP-----AGPNEECVQCDLADANAVNAMVAGCDGIVHLGGIS 75 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEE-EEEEESSCCCC-----CCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCE-EEEEecCCccc-----cCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCc
Confidence 4679999999999999999999999998 99999986532 25679999999999999999999999999999973
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
...+++..+++|+.||.+++++|++.+++|+||+||..+|.+.....+.+|+.|..|. +.|+.||..+|.++
T Consensus 76 ----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~----~~Y~~sK~~~e~~~ 147 (267)
T 3rft_A 76 ----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPD----GLYGVSKCFGENLA 147 (267)
T ss_dssp ----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCC----SHHHHHHHHHHHHH
T ss_pred ----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCC----ChHHHHHHHHHHHH
Confidence 2234577899999999999999999999999999999996444555677888887765 78999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
+.+.. ..+++++++||+.|||+ ++++...++|+|++|+++++..+++.
T Consensus 148 ~~~a~-------~~g~~~~~vr~~~v~~~---------------------~~~~~~~~~~~~~~d~a~~~~~~~~~---- 195 (267)
T 3rft_A 148 RMYFD-------KFGQETALVRIGSCTPE---------------------PNNYRMLSTWFSHDDFVSLIEAVFRA---- 195 (267)
T ss_dssp HHHHH-------HHCCCEEEEEECBCSSS---------------------CCSTTHHHHBCCHHHHHHHHHHHHHC----
T ss_pred HHHHH-------HhCCeEEEEEeecccCC---------------------CCCCCceeeEEcHHHHHHHHHHHHhC----
Confidence 87754 46899999999999987 23456678899999999999998873
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCc
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPK 291 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~ 291 (478)
+...+.++++.++++.++.++... +.+|+.++.
T Consensus 196 -------~~~~~~~~~~~s~~~~~~~~~~~~--~~~g~~p~~ 228 (267)
T 3rft_A 196 -------PVLGCPVVWGASANDAGWWDNSHL--GFLGWKPKD 228 (267)
T ss_dssp -------SCCCSCEEEECCCCTTCCBCCGGG--GGGCCCCCC
T ss_pred -------CCCCceEEEEeCCCCCCcccChhH--HHCCCCCCC
Confidence 233456788888888877776433 677876443
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=258.89 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=170.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC-HHHHHHHhcCcCEEEEcccCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS-KIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d-~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
|+|||||||||||++++++|+++|++ |++++|++... ....+++++++|++| .+++.++++++|+|||+|+...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQ-IYAGARKVEQV----PQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCE-EEEEESSGGGS----CCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCccch----hhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 48999999999999999999999998 99999986522 222789999999999 9999999999999999999643
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
...+++|+.++.+++++|++.+++++||+||..++ +.. +.+| .+.. +.+.|+.+|..+|++++
T Consensus 76 --------~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~-~~~---~~~e-~~~~----~~~~Y~~sK~~~e~~~~ 138 (219)
T 3dqp_A 76 --------KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSL-QPE---KWIG-AGFD----ALKDYYIAKHFADLYLT 138 (219)
T ss_dssp --------SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTT-CGG---GCCS-HHHH----HTHHHHHHHHHHHHHHH
T ss_pred --------CCcEeEeHHHHHHHHHHHHHhCCCEEEEECccccc-CCC---cccc-cccc----cccHHHHHHHHHHHHHH
Confidence 23678999999999999999999999999998763 221 2334 2222 24789999999999996
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~ 250 (478)
+ ..+++++++||+.+||+...+.+ ..+ +..++++|++|+|++++.+++.
T Consensus 139 ~----------~~~i~~~ilrp~~v~g~~~~~~~--------------~~~--~~~~~~i~~~Dva~~i~~~l~~----- 187 (219)
T 3dqp_A 139 K----------ETNLDYTIIQPGALTEEEATGLI--------------DIN--DEVSASNTIGDVADTIKELVMT----- 187 (219)
T ss_dssp H----------SCCCEEEEEEECSEECSCCCSEE--------------EES--SSCCCCEEHHHHHHHHHHHHTC-----
T ss_pred h----------ccCCcEEEEeCceEecCCCCCcc--------------ccC--CCcCCcccHHHHHHHHHHHHhC-----
Confidence 2 46899999999999999654321 122 5778999999999999999973
Q ss_pred CCCCCCCCCCCceEEecCCCCCCHHHHHHH
Q 011770 251 PGQKGRPIASGQPYFVSDGFPINTFEFIGP 280 (478)
Q Consensus 251 ~~~~~~~~~~g~~yni~~g~~~s~~e~~~~ 280 (478)
+...|++||+++|+ .++.|+.+.
T Consensus 188 ------~~~~g~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 188 ------DHSIGKVISMHNGK-TAIKEALES 210 (219)
T ss_dssp ------GGGTTEEEEEEECS-EEHHHHHHT
T ss_pred ------ccccCcEEEeCCCC-ccHHHHHHH
Confidence 34568999998875 888887663
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=254.53 Aligned_cols=226 Identities=15% Similarity=0.182 Sum_probs=176.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
|+|||||||||||++++++|.++ |++ |++++|++... ......+++++++|++|++++.++++++|+|||+|+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~-V~~~~R~~~~~--~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~ 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDH-FHIGVRNVEKV--PDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIH 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTT-EEEEESSGGGS--CGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCc-EEEEECCHHHH--HHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCc
Confidence 47999999999999999999998 998 99999876532 223457899999999999999999999999999998532
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
. ...|+.++.+++++|++.|++|+||+||... ++..|+ .+...+..+|+.+.
T Consensus 78 ~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~----------~~~~~~--------~~~~~~~~~e~~~~ 129 (289)
T 3e48_A 78 P----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYAD----------QHNNPF--------HMSPYFGYASRLLS 129 (289)
T ss_dssp S----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCC----------STTCCS--------TTHHHHHHHHHHHH
T ss_pred c----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCC----------CCCCCC--------ccchhHHHHHHHHH
Confidence 2 1358999999999999999999999999532 111111 12233345666664
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~ 250 (478)
+ .+++++++||+.+||+. ...+......+. ..++.++..++|+|++|+|++++.++..
T Consensus 130 ~-----------~g~~~~ilrp~~~~~~~----~~~~~~~~~~~~--~~~~~g~~~~~~i~~~Dva~~~~~~l~~----- 187 (289)
T 3e48_A 130 T-----------SGIDYTYVRMAMYMDPL----KPYLPELMNMHK--LIYPAGDGRINYITRNDIARGVIAIIKN----- 187 (289)
T ss_dssp H-----------HCCEEEEEEECEESTTH----HHHHHHHHHHTE--ECCCCTTCEEEEECHHHHHHHHHHHHHC-----
T ss_pred H-----------cCCCEEEEecccccccc----HHHHHHHHHCCC--EecCCCCceeeeEEHHHHHHHHHHHHcC-----
Confidence 3 57899999999999983 222223333333 2456678899999999999999999873
Q ss_pred CCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChH
Q 011770 251 PGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVP 297 (478)
Q Consensus 251 ~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~ 297 (478)
+...|++||++ ++++|+.|+++.+.+.+|.+.+...+|..
T Consensus 188 ------~~~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~ 227 (289)
T 3e48_A 188 ------PDTWGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLE 227 (289)
T ss_dssp ------GGGTTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHH
T ss_pred ------CCcCCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHH
Confidence 23348899999 99999999999999999998766666654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=254.22 Aligned_cols=218 Identities=19% Similarity=0.181 Sum_probs=172.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCe-EEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGV-HCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v-~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
..+++|+|+|||||||||++++++|+++|++ |++++|++... ......++ +++++|++ +++.++++++|+|||+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~~~~--~~~~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHE-PVAMVRNEEQG--PELRERGASDIVVANLE--EDFSHAFASIDAVVFA 91 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSGGGH--HHHHHTTCSEEEECCTT--SCCGGGGTTCSEEEEC
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCe-EEEEECChHHH--HHHHhCCCceEEEcccH--HHHHHHHcCCCEEEEC
Confidence 4578899999999999999999999999998 99999976532 12233578 99999999 7788889999999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
|+.... .++...+++|+.++.+++++|++.+++++|++||.....+ |..+ .+.+.|+.+|..+
T Consensus 92 ag~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~--------~~~~-----~~~~~Y~~sK~~~ 154 (236)
T 3e8x_A 92 AGSGPH----TGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP--------DQGP-----MNMRHYLVAKRLA 154 (236)
T ss_dssp CCCCTT----SCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG--------GGSC-----GGGHHHHHHHHHH
T ss_pred CCCCCC----CCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC--------CCCh-----hhhhhHHHHHHHH
Confidence 996432 3567789999999999999999999999999999655211 1111 1237899999999
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhc
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMG 245 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~ 245 (478)
|++++. .+++++++||+.+||+..... ....+++...++++|++|+|++++.+++
T Consensus 155 e~~~~~-----------~gi~~~~lrpg~v~~~~~~~~-------------~~~~~~~~~~~~~i~~~Dva~~~~~~~~- 209 (236)
T 3e8x_A 155 DDELKR-----------SSLDYTIVRPGPLSNEESTGK-------------VTVSPHFSEITRSITRHDVAKVIAELVD- 209 (236)
T ss_dssp HHHHHH-----------SSSEEEEEEECSEECSCCCSE-------------EEEESSCSCCCCCEEHHHHHHHHHHHTT-
T ss_pred HHHHHH-----------CCCCEEEEeCCcccCCCCCCe-------------EEeccCCCcccCcEeHHHHHHHHHHHhc-
Confidence 999862 589999999999999965331 1233455567899999999999999987
Q ss_pred ccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHH
Q 011770 246 LLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLL 282 (478)
Q Consensus 246 l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~ 282 (478)
.+...|++||++++ +.++.|+++.+.
T Consensus 210 ----------~~~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 210 ----------QQHTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp ----------CGGGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred ----------CccccCCeEEEeCC-CcCHHHHHHHhc
Confidence 23467899999987 599999988654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=248.74 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=146.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
|+|||||||||||++|+++|+++|++ |++++|++.... . ..++++++++|++|.++ ++++++|+|||+|+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~--~-~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~- 73 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHE-VTAIVRNAGKIT--Q-THKDINILQKDIFDLTL--SDLSDQNVVVDAYGISP- 73 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCSHHHH--H-HCSSSEEEECCGGGCCH--HHHTTCSEEEECCCSST-
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCE-EEEEEcCchhhh--h-ccCCCeEEeccccChhh--hhhcCCCEEEECCcCCc-
Confidence 47999999999999999999999998 999999764211 1 12689999999999887 78899999999998632
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLK 171 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~ 171 (478)
...++|+.++.+++++|++.+++|+|++||..++++.....+..|+.+..|. +.|+.+|..+|.+...
T Consensus 74 --------~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~----~~y~~~k~~~e~~~~~ 141 (221)
T 3ew7_A 74 --------DEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREA----PYYPTARAQAKQLEHL 141 (221)
T ss_dssp --------TTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC-------------------C----CCSCCHHHHHHHHHHH
T ss_pred --------cccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCH----HHHHHHHHHHHHHHHH
Confidence 1246799999999999999999999999999887776554456666666554 7799999999987322
Q ss_pred HcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCC
Q 011770 172 SNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251 (478)
Q Consensus 172 ~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~ 251 (478)
... ..+++++++||+.+|||++.. ..+ ...+......+++ .+++|++|+|++++.+++
T Consensus 142 ~~~-------~~gi~~~ivrp~~v~g~~~~~--~~~---~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~------- 199 (221)
T 3ew7_A 142 KSH-------QAEFSWTYISPSAMFEPGERT--GDY---QIGKDHLLFGSDG---NSFISMEDYAIAVLDEIE------- 199 (221)
T ss_dssp HTT-------TTTSCEEEEECSSCCCCC-----------------------------CCCHHHHHHHHHHHHH-------
T ss_pred Hhh-------ccCccEEEEeCcceecCCCcc--Cce---EeccccceecCCC---CceEeHHHHHHHHHHHHh-------
Confidence 211 468999999999999995422 111 1112223333443 379999999999999998
Q ss_pred CCCCCCCCCCceEEecCCCCCCHHH
Q 011770 252 GQKGRPIASGQPYFVSDGFPINTFE 276 (478)
Q Consensus 252 ~~~~~~~~~g~~yni~~g~~~s~~e 276 (478)
.+...|++||++++.+.+..|
T Consensus 200 ----~~~~~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 200 ----RPNHLNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp ----SCSCTTSEEECCC--------
T ss_pred ----CccccCCEEEECCCCcccccc
Confidence 345679999999988776544
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=252.82 Aligned_cols=233 Identities=16% Similarity=0.100 Sum_probs=175.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+++|+|+||||+||||++++++|+++ |++ |++++|++... .....+++++.+|++|.+++.++++++|+|||+|
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~-V~~~~r~~~~~---~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a 77 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRSAQGK---EKIGGEADVFIGDITDADSINPAFQGIDALVILT 77 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCE-EEEEESCHHHH---HHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcE-EEEEEcCCCch---hhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEec
Confidence 45789999999999999999999999 788 99999865321 1124568899999999999999999999999999
Q ss_pred cCCCCch-------------hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 87 SYGMSGK-------------EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 87 a~~~~~~-------------~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
+...... ...+....+++|+.++.+++++|++.+++++||+||.+++ +|..|..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~---------~~~~~~~~~-- 146 (253)
T 1xq6_A 78 SAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGT---------NPDHPLNKL-- 146 (253)
T ss_dssp CCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTT---------CTTCGGGGG--
T ss_pred cccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCC---------CCCCccccc--
Confidence 9643211 0111234679999999999999999999999999998763 122221111
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
..+.|+.+|..+|++++. .+++++++||+.+||+..... . ...+....+++ ...+++|++
T Consensus 147 ~~~~y~~sK~~~e~~~~~-----------~~i~~~~vrpg~v~~~~~~~~--~----~~~~~~~~~~~---~~~~~~~~~ 206 (253)
T 1xq6_A 147 GNGNILVWKRKAEQYLAD-----------SGTPYTIIRAGGLLDKEGGVR--E----LLVGKDDELLQ---TDTKTVPRA 206 (253)
T ss_dssp GGCCHHHHHHHHHHHHHT-----------SSSCEEEEEECEEECSCSSSS--C----EEEESTTGGGG---SSCCEEEHH
T ss_pred cchhHHHHHHHHHHHHHh-----------CCCceEEEecceeecCCcchh--h----hhccCCcCCcC---CCCcEEcHH
Confidence 014588899999998853 579999999999999975320 0 00111111222 135799999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC---CCCHHHHHHHHHHhcCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF---PINTFEFIGPLLKTLDY 287 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~---~~s~~e~~~~i~~~lg~ 287 (478)
|+|++++.+++. +...|++||+++++ ++++.|+++.+.+.+|.
T Consensus 207 Dva~~~~~~~~~-----------~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 207 DVAEVCIQALLF-----------EEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp HHHHHHHHHTTC-----------GGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred HHHHHHHHHHcC-----------ccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 999999998872 23468899999864 69999999999998885
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=269.40 Aligned_cols=238 Identities=17% Similarity=0.163 Sum_probs=182.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc-cccccCCCeEEEEec-CCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW-SHLLINHGVHCIQGD-VVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~-~~~~~~~~v~~v~gD-l~d~~~l~~~l~~~D~ViHlAa 87 (478)
++|+|+|||||||||++|+++|+++|++ |++++|+++... .......+++++.+| ++|.+++.++++++|+|||+++
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~ 82 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 82 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence 3578999999999999999999999999 999998765321 011122478999999 9999999999999999999997
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccce-eeCCccccCCCCCCCCCCCCccCCchHhhHHHH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNV-VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVA 165 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v-~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~a 165 (478)
... .+.|+.+ .+++++|++.+ +++|||+||.++ .++ + .+ .++|+.||..+
T Consensus 83 ~~~-----------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~--------~----~~----~~~y~~sK~~~ 134 (352)
T 1xgk_A 83 SQA-----------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYG--------P----WP----AVPMWAPKFTV 134 (352)
T ss_dssp STT-----------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTS--------S----CC----CCTTTHHHHHH
T ss_pred CCC-----------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccC--------C----CC----CccHHHHHHHH
Confidence 421 1347777 99999999999 999999999862 111 0 11 25799999999
Q ss_pred HHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHH--HHcCCCC-eeeCCCCccccceeH-HHHHHHHHH
Q 011770 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSL--AKLGLVP-FKIGEPSVKTDWIYV-DNLVLALIL 241 (478)
Q Consensus 166 E~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~--~~~g~~~-~~~g~g~~~~~~v~V-~Dva~a~~~ 241 (478)
|+++++ .+++++++||+ +||++.......++.. ...|... .+++++++.++++|+ +|+|++++.
T Consensus 135 E~~~~~-----------~gi~~~ivrpg-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~ 202 (352)
T 1xgk_A 135 ENYVRQ-----------LGLPSTFVYAG-IYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQ 202 (352)
T ss_dssp HHHHHT-----------SSSCEEEEEEC-EEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHH
T ss_pred HHHHHH-----------cCCCEEEEecc-eecCCchhcccccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHH
Confidence 999864 37899999976 7999765422111111 1334432 246778899999999 899999999
Q ss_pred HHhcccCCCCCCCCCC-CCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHH
Q 011770 242 ASMGLLDDIPGQKGRP-IASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHA 299 (478)
Q Consensus 242 a~~~l~~~~~~~~~~~-~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~ 299 (478)
+++. .+ ...|++||+++ +++|+.|+++.+.+.+|.+.+...+|.+++
T Consensus 203 ~l~~----------~~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~~~ 250 (352)
T 1xgk_A 203 IFKD----------GPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEI 250 (352)
T ss_dssp HHHH----------CHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSCCC
T ss_pred HHhC----------CchhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHHHH
Confidence 9873 11 12578999995 679999999999999999877777775543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=246.25 Aligned_cols=218 Identities=14% Similarity=0.046 Sum_probs=162.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGMS 91 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~~ 91 (478)
|+|||||||||||++|+++|+++|++ |++++|++... ......+++++.+|++|.++ ++++++|+|||+|+....
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~--~~~~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~ 75 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHE-VLAVVRDPQKA--ADRLGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPWG 75 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHH--HHHTCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCTT
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCE-EEEEEeccccc--ccccCCCceEEecccccccH--hhcccCCEEEECCccCCC
Confidence 47999999999999999999999998 99999875421 12234689999999999887 788999999999997411
Q ss_pred chhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCcccc--CCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 92 GKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIV--NGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 92 ~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~--~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
....++|+.++.+++++|++.+ +|+|++||.+++++..... +.+|.....| .+.|+.+|..+|.+
T Consensus 76 -------~~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~sK~~~e~~- 142 (224)
T 3h2s_A 76 -------SGRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAAS----QPWYDGALYQYYEY- 142 (224)
T ss_dssp -------SSCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGG----STTHHHHHHHHHHH-
T ss_pred -------cchhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCcc----chhhHHHHHHHHHH-
Confidence 1235789999999999999999 9999999998766543322 2233222222 37899999999955
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
..... ..+++++++||+.+|||++... ...+..... .+...++++|++|+|++++.+++
T Consensus 143 ~~~~~-------~~~i~~~ivrp~~v~g~~~~~~-------~~~~~~~~~--~~~~~~~~i~~~DvA~~~~~~l~----- 201 (224)
T 3h2s_A 143 QFLQM-------NANVNWIGISPSEAFPSGPATS-------YVAGKDTLL--VGEDGQSHITTGNMALAILDQLE----- 201 (224)
T ss_dssp HHHTT-------CTTSCEEEEEECSBCCCCCCCC-------EEEESSBCC--CCTTSCCBCCHHHHHHHHHHHHH-----
T ss_pred HHHHh-------cCCCcEEEEcCccccCCCcccC-------ceecccccc--cCCCCCceEeHHHHHHHHHHHhc-----
Confidence 34432 5789999999999999965431 111111111 23456799999999999999998
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
.+...|++|++++.++.+.
T Consensus 202 ------~~~~~g~~~~~~~~~~~~~ 220 (224)
T 3h2s_A 202 ------HPTAIRDRIVVRDADLEHH 220 (224)
T ss_dssp ------SCCCTTSEEEEEECC----
T ss_pred ------CccccCCEEEEecCcchhc
Confidence 3456789999998766554
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=254.25 Aligned_cols=241 Identities=18% Similarity=0.142 Sum_probs=184.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
+|+|+||||||+||++++++|+++| ++ |++++|++...........+++++++|++|++++.++++++|+|||+|+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~-V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~ 83 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFK-VRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYW 83 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSE-EEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCce-EEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCCC
Confidence 5789999999999999999999998 88 999999865321112234679999999999999999999999999999731
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
. ....+.|+.++.+++++|++.|++++||+||..++ +. ++.. + ..+|+.+|..+|+++
T Consensus 84 ~--------~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~-~~------~~~~---~----~~~y~~sK~~~e~~~ 141 (299)
T 2wm3_A 84 E--------SCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIK-KL------TAGR---L----AAAHFDGKGEVEEYF 141 (299)
T ss_dssp H--------HTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHH-HH------TTTS---C----CCHHHHHHHHHHHHH
T ss_pred c--------cccchHHHHHHHHHHHHHHHcCCCEEEEEcCcccc-cc------CCCc---c----cCchhhHHHHHHHHH
Confidence 0 01245789999999999999999999998887663 21 1111 1 257999999999998
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCC-CeeeCCCCccccceeHHHHHHHHHHHHhcccC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLV-PFKIGEPSVKTDWIYVDNLVLALILASMGLLD 248 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~-~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~ 248 (478)
++ .+++++++||+.+||+....+.+. ....|.. ....+.++..++|+|++|+|+++..++..
T Consensus 142 ~~-----------~gi~~~ilrp~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~--- 204 (299)
T 2wm3_A 142 RD-----------IGVPMTSVRLPCYFENLLSHFLPQ---KAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKM--- 204 (299)
T ss_dssp HH-----------HTCCEEEEECCEEGGGGGTTTCCE---ECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHS---
T ss_pred HH-----------CCCCEEEEeecHHhhhchhhcCCc---ccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcC---
Confidence 75 368899999999999753321111 1223422 11233467889999999999999999872
Q ss_pred CCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHH
Q 011770 249 DIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHA 299 (478)
Q Consensus 249 ~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~ 299 (478)
.....|++|++++ +++|+.|+++.+.+.+|.+.+...+|.+.+
T Consensus 205 -------~~~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~ 247 (299)
T 2wm3_A 205 -------PEKYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDY 247 (299)
T ss_dssp -------HHHHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHH
T ss_pred -------hhhhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHH
Confidence 1123578999986 689999999999999999877677776554
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-30 Score=241.26 Aligned_cols=205 Identities=20% Similarity=0.166 Sum_probs=161.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
++|+|+|||||||||++++++|+++|+ + |++++|++.. ..++++++.+|++|.+++.+++ +|+|||+|+
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~-V~~~~r~~~~------~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~ 74 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAK-VIAPARKALA------EHPRLDNPVGPLAELLPQLDGS--IDTAFCCLG 74 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCE-EECCBSSCCC------CCTTEECCBSCHHHHGGGCCSC--CSEEEECCC
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCe-EEEEeCCCcc------cCCCceEEeccccCHHHHHHhh--hcEEEECee
Confidence 457999999999999999999999998 7 9999987653 2457888999999998888877 999999998
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~ 167 (478)
... ....+++..+++|+.++.+++++|++.+++++||+||..++ +. | .++|+.+|..+|+
T Consensus 75 ~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~-~~-------------~----~~~y~~sK~~~e~ 134 (215)
T 2a35_A 75 TTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGAD-AK-------------S----SIFYNRVKGELEQ 134 (215)
T ss_dssp CCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCC-TT-------------C----SSHHHHHHHHHHH
T ss_pred ecc--ccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccC-CC-------------C----ccHHHHHHHHHHH
Confidence 642 22345677889999999999999999999999999999884 21 1 2679999999999
Q ss_pred HHHHHcCCCCccCCCCcce-EEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcc
Q 011770 168 LVLKSNGRPFKKNNRKCLY-TCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGL 246 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~-~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l 246 (478)
+++. .+++ ++++||+.+|||++...+ ...+.... . ..++ ..++++|++|+|++++.+++.
T Consensus 135 ~~~~-----------~~~~~~~~vrp~~v~g~~~~~~~---~~~~~~~~-~-~~~~--~~~~~i~~~Dva~~~~~~~~~- 195 (215)
T 2a35_A 135 ALQE-----------QGWPQLTIARPSLLFGPREEFRL---AEILAAPI-A-RILP--GKYHGIEACDLARALWRLALE- 195 (215)
T ss_dssp HHTT-----------SCCSEEEEEECCSEESTTSCEEG---GGGTTCCC-C-------CHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHH-----------cCCCeEEEEeCceeeCCCCcchH---HHHHHHhh-h-hccC--CCcCcEeHHHHHHHHHHHHhc-
Confidence 9853 4788 999999999999865311 11122211 1 2233 278999999999999999873
Q ss_pred cCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 247 LDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 247 ~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
+ .+++||+++++++++
T Consensus 196 ----------~--~~~~~~i~~~~~~~~ 211 (215)
T 2a35_A 196 ----------E--GKGVRFVESDELRKL 211 (215)
T ss_dssp ----------C--CSEEEEEEHHHHHHH
T ss_pred ----------C--CCCceEEcHHHHHHh
Confidence 1 277999998765544
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=224.49 Aligned_cols=203 Identities=17% Similarity=0.195 Sum_probs=155.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
+|+|+||||||+||++++++|+++|++ |++++|++... ......+++++.+|++|.+++.++++++|+|||+|+...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~-V~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~ 79 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYE-VTVLVRDSSRL--PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN 79 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCGGGS--CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCe-EEEEEeChhhc--ccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCC
Confidence 378999999999999999999999998 99999876522 111246799999999999999999999999999998643
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~ 170 (478)
. . ...++|+.++.+++++|++.+++++|++||.+++ +.... .+. +.+.|+.+|..+|++++
T Consensus 80 ~----~---~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~-~~~~~------~~~-----~~~~y~~~K~~~e~~~~ 140 (206)
T 1hdo_A 80 D----L---SPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLL-WDPTK------VPP-----RLQAVTDDHIRMHKVLR 140 (206)
T ss_dssp C----C---SCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGT-SCTTC------SCG-----GGHHHHHHHHHHHHHHH
T ss_pred C----C---CccchHHHHHHHHHHHHHHhCCCeEEEEeeeeec-cCccc------ccc-----cchhHHHHHHHHHHHHH
Confidence 2 1 1235899999999999999999999999999884 32211 111 23689999999999985
Q ss_pred HHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCC
Q 011770 171 KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDI 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~ 250 (478)
+ .+++++++||+.+ |++... +......++ ....+++|++|+|++++.+++
T Consensus 141 ~-----------~~i~~~~lrp~~~-~~~~~~-----------~~~~~~~~~-~~~~~~i~~~Dva~~~~~~~~------ 190 (206)
T 1hdo_A 141 E-----------SGLKYVAVMPPHI-GDQPLT-----------GAYTVTLDG-RGPSRVISKHDLGHFMLRCLT------ 190 (206)
T ss_dssp H-----------TCSEEEEECCSEE-ECCCCC-----------SCCEEESSS-CSSCSEEEHHHHHHHHHHTTS------
T ss_pred h-----------CCCCEEEEeCCcc-cCCCCC-----------cceEecccC-CCCCCccCHHHHHHHHHHHhc------
Confidence 3 4789999999998 443211 111111111 111589999999999999886
Q ss_pred CCCCCCCCCCCceEEecCCC
Q 011770 251 PGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 251 ~~~~~~~~~~g~~yni~~g~ 270 (478)
.+...|++||+++|+
T Consensus 191 -----~~~~~g~~~~i~~g~ 205 (206)
T 1hdo_A 191 -----TDEYDGHSTYPSHQY 205 (206)
T ss_dssp -----CSTTTTCEEEEECCC
T ss_pred -----Cccccccceeeeccc
Confidence 234578999999875
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=248.43 Aligned_cols=241 Identities=16% Similarity=0.127 Sum_probs=179.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc--cc----cccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW--SH----LLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~~----~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
+|+|+|||||||||++++++|+++|++ |++++|+++... .. .....+++++++|++|++++.++++++|+|||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 82 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCc-EEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence 568999999999999999999999998 999999864310 00 11246799999999999999999999999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKS 163 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~ 163 (478)
+|+.... ..|+.++.+++++|++.| ++|||+ |+ |+...... +.+..|. .+.| .+|.
T Consensus 83 ~a~~~~~-----------~~~~~~~~~l~~aa~~~g~v~~~v~-S~----~g~~~~~~---~~~~~p~---~~~y-~sK~ 139 (313)
T 1qyd_A 83 ALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLP-SE----FGMDPDIM---EHALQPG---SITF-IDKR 139 (313)
T ss_dssp CCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEEC-SC----CSSCTTSC---CCCCSST---THHH-HHHH
T ss_pred CCccccc-----------hhhHHHHHHHHHHHHhcCCCceEEe-cC----CcCCcccc---ccCCCCC---cchH-HHHH
Confidence 9986322 137888999999999999 999996 43 33221111 2222231 2568 9999
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS 243 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~ 243 (478)
.+|+++++ .+++++++||+.++|+....+..........+....++|+++..++|+|++|++++++.++
T Consensus 140 ~~e~~~~~-----------~g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l 208 (313)
T 1qyd_A 140 KVRRAIEA-----------ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSI 208 (313)
T ss_dssp HHHHHHHH-----------TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHT
T ss_pred HHHHHHHh-----------cCCCeEEEEeceeccccccccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHH
Confidence 99999864 4688999999999885322111000000112233346788899999999999999999988
Q ss_pred hcccCCCCCCCCCCCCCCceEEecC-CCCCCHHHHHHHHHHhcCCCCCcccCChH
Q 011770 244 MGLLDDIPGQKGRPIASGQPYFVSD-GFPINTFEFIGPLLKTLDYDLPKSWLAVP 297 (478)
Q Consensus 244 ~~l~~~~~~~~~~~~~~g~~yni~~-g~~~s~~e~~~~i~~~lg~~~~~~~lp~~ 297 (478)
+. +...|+.|++++ ++.+|+.|+++.+.+.+|.+.+...+|..
T Consensus 209 ~~-----------~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~ 252 (313)
T 1qyd_A 209 DD-----------PQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQ 252 (313)
T ss_dssp TC-----------GGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSH
T ss_pred hC-----------cccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECCHH
Confidence 62 234577888875 47899999999999999998777777753
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=246.11 Aligned_cols=233 Identities=16% Similarity=0.158 Sum_probs=178.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+++|+||||||+||++++++|+++|++ |++++|+++..... .....+++++++|++|.+++.++++++|+|||+|+.
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHP-TYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCC-EEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCc-EEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 468999999999999999999999998 99999986522110 113467999999999999999999999999999974
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHH
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~ 167 (478)
. ++.++.+++++|++.+ ++++|+ |+ ||.. .+|..+..|. .+.| .+|..+|+
T Consensus 90 ~---------------~~~~~~~l~~aa~~~g~v~~~v~-S~----~g~~----~~~~~~~~p~---~~~y-~sK~~~e~ 141 (318)
T 2r6j_A 90 P---------------QILDQFKILEAIKVAGNIKRFLP-SD----FGVE----EDRINALPPF---EALI-ERKRMIRR 141 (318)
T ss_dssp G---------------GSTTHHHHHHHHHHHCCCCEEEC-SC----CSSC----TTTCCCCHHH---HHHH-HHHHHHHH
T ss_pred h---------------hhHHHHHHHHHHHhcCCCCEEEe-ec----cccC----cccccCCCCc---chhH-HHHHHHHH
Confidence 2 1557889999999998 999985 43 3321 1333332221 2568 99999999
Q ss_pred HHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhccc
Q 011770 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLL 247 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~ 247 (478)
++++ .+++++++||+.+++. +++.+......+....++++++..++|+|++|++++++.+++.
T Consensus 142 ~~~~-----------~~~~~~~lr~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~-- 204 (318)
T 2r6j_A 142 AIEE-----------ANIPYTYVSANCFASY----FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATD-- 204 (318)
T ss_dssp HHHH-----------TTCCBEEEECCEEHHH----HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTC--
T ss_pred HHHh-----------cCCCeEEEEcceehhh----hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcC--
Confidence 9864 4688999999887764 2333332222334455678889999999999999999998862
Q ss_pred CCCCCCCCCCCCCCceEEecC-CCCCCHHHHHHHHHHhcCCCCCcccCChHH
Q 011770 248 DDIPGQKGRPIASGQPYFVSD-GFPINTFEFIGPLLKTLDYDLPKSWLAVPH 298 (478)
Q Consensus 248 ~~~~~~~~~~~~~g~~yni~~-g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~ 298 (478)
+...|+.|++.+ ++.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 205 ---------~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 247 (318)
T 2r6j_A 205 ---------PRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEE 247 (318)
T ss_dssp ---------GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEECHHH
T ss_pred ---------ccccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecCHHH
Confidence 233477888764 588999999999999999988777777654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-28 Score=227.60 Aligned_cols=196 Identities=17% Similarity=0.075 Sum_probs=153.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|++|+|+||||+|+||++++++|+++|+ + |++++|++.... .....+++++.+|++|.+++.++++++|+|||+|
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~-V~~~~r~~~~~~--~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a 92 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSK-VTLIGRRKLTFD--EEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCL 92 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSE-EEEEESSCCCCC--SGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCE-EEEEEcCCCCcc--ccccCCceEEecCcCCHHHHHHHhcCCCEEEECC
Confidence 4578999999999999999999999999 8 999999865321 1123468899999999999999999999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHH
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAE 166 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE 166 (478)
+.... ..+++..+++|+.++.+++++|++.+++++|++||.+++ +. + .++|+.+|..+|
T Consensus 93 g~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~-~~-------------~----~~~Y~~sK~~~e 151 (242)
T 2bka_A 93 GTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGAD-KS-------------S----NFLYLQVKGEVE 151 (242)
T ss_dssp CCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCC-TT-------------C----SSHHHHHHHHHH
T ss_pred Ccccc---cCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCC-CC-------------C----cchHHHHHHHHH
Confidence 86422 223567889999999999999999999999999999874 21 1 257999999999
Q ss_pred HHHHHHcCCCCccCCCCcc-eEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 167 QLVLKSNGRPFKKNNRKCL-YTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 167 ~~v~~~~~~~~~~~~~~gl-~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
++++.. ++ +++++||+.+|||+..... ..+........ +..++ ...++|++|+|++++.+++
T Consensus 152 ~~~~~~-----------~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~dva~~~~~~~~ 215 (242)
T 2bka_A 152 AKVEEL-----------KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSL-PDSWA----SGHSVPVVTVVRAMLNNVV 215 (242)
T ss_dssp HHHHTT-----------CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSC-CTTGG----GGTEEEHHHHHHHHHHHHT
T ss_pred HHHHhc-----------CCCCeEEEcCceecCCCCCCcHHHHHHHHhhccc-Ccccc----CCcccCHHHHHHHHHHHHh
Confidence 998653 45 6999999999999764322 23333333322 21122 2359999999999999987
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-28 Score=238.83 Aligned_cols=235 Identities=17% Similarity=0.159 Sum_probs=176.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--------cccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--------LLINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--------~~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
||+|+|||||||||++++++|+++|++ |++++|+++....+ .....+++++++|++|.+++.++++++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 80 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNP-TYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV 80 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCC-EEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCc-EEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence 578999999999999999999999998 99999976211000 112367999999999999999999999999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhh
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~s 161 (478)
||+|+... +.++.+++++|++.| ++|+|+ |+ +|.. .+|..+..|. .+.| .+
T Consensus 81 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~----~g~~----~~~~~~~~p~---~~~y-~s 132 (307)
T 2gas_A 81 ICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-SE----FGLD----VDRHDAVEPV---RQVF-EE 132 (307)
T ss_dssp EECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-SC----CSSC----TTSCCCCTTH---HHHH-HH
T ss_pred EECCcccc---------------cccHHHHHHHHHhcCCceEEee-cc----cccC----cccccCCCcc---hhHH-HH
Confidence 99998531 456789999999998 999984 33 3321 1333333331 2579 99
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALIL 241 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~ 241 (478)
|..+|+++++ .+++++++||+.++|+....+.... .....+....++|+++..++|+|++|++++++.
T Consensus 133 K~~~e~~~~~-----------~~i~~~~lrp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~ 200 (307)
T 2gas_A 133 KASIRRVIEA-----------EGVPYTYLCCHAFTGYFLRNLAQLD-ATDPPRDKVVILGDGNVKGAYVTEADVGTFTIR 200 (307)
T ss_dssp HHHHHHHHHH-----------HTCCBEEEECCEETTTTGGGTTCTT-CSSCCSSEEEEETTSCSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------cCCCeEEEEcceeeccccccccccc-cccCCCCeEEEecCCCcceEEeeHHHHHHHHHH
Confidence 9999999864 3688999999998886432211000 001122334567888899999999999999999
Q ss_pred HHhcccCCCCCCCCCCCCCCceEEecC-CCCCCHHHHHHHHHHhcCCCCCcccCChH
Q 011770 242 ASMGLLDDIPGQKGRPIASGQPYFVSD-GFPINTFEFIGPLLKTLDYDLPKSWLAVP 297 (478)
Q Consensus 242 a~~~l~~~~~~~~~~~~~~g~~yni~~-g~~~s~~e~~~~i~~~lg~~~~~~~lp~~ 297 (478)
+++. +...|+.|++.+ ++.+|+.|+++.+.+.+|.+.+...+|..
T Consensus 201 ~l~~-----------~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~ 246 (307)
T 2gas_A 201 AAND-----------PNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEE 246 (307)
T ss_dssp HHTC-----------GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEECHH
T ss_pred HHcC-----------ccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecCHH
Confidence 9862 234577888865 57899999999999999998777777754
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-28 Score=241.86 Aligned_cols=234 Identities=16% Similarity=0.148 Sum_probs=177.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC-CCc--ccc----cccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT-NSP--WSH----LLINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~-~~~--~~~----~~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
+||+|+|||||||||++++++|+++|++ |++++|++ +.. ... .....+++++++|++|.+++.++++++|+|
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~v 81 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHP-TFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIV 81 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCC-EEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCc-EEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEE
Confidence 3578999999999999999999999998 99999986 211 000 012467999999999999999999999999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhh
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~s 161 (478)
||+|+.. ++.++.+++++|++.| ++|||+ |+ ++... +|..+..|. .+.| .+
T Consensus 82 i~~a~~~---------------~~~~~~~l~~aa~~~g~v~~~v~-S~----~g~~~----~~~~~~~p~---~~~y-~s 133 (321)
T 3c1o_A 82 ISALPFP---------------MISSQIHIINAIKAAGNIKRFLP-SD----FGCEE----DRIKPLPPF---ESVL-EK 133 (321)
T ss_dssp EECCCGG---------------GSGGGHHHHHHHHHHCCCCEEEC-SC----CSSCG----GGCCCCHHH---HHHH-HH
T ss_pred EECCCcc---------------chhhHHHHHHHHHHhCCccEEec-cc----cccCc----cccccCCCc---chHH-HH
Confidence 9999842 1567889999999999 999983 32 33221 232322221 2579 99
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHH---HHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSL---AKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~---~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
|..+|+++++ .+++++++||+.++|+. .+.+... ...+.....+++++..++|+|++|++++
T Consensus 134 K~~~e~~~~~-----------~~~~~~~lrp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~ 198 (321)
T 3c1o_A 134 KRIIRRAIEA-----------AALPYTYVSANCFGAYF----VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKY 198 (321)
T ss_dssp HHHHHHHHHH-----------HTCCBEEEECCEEHHHH----HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHH-----------cCCCeEEEEeceecccc----ccccccccccccccCceEEecCCCcceeEeeHHHHHHH
Confidence 9999999864 36889999999888752 2222211 1233345577888999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecC-CCCCCHHHHHHHHHHhcCCCCCcccCChHH
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSD-GFPINTFEFIGPLLKTLDYDLPKSWLAVPH 298 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~-g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~ 298 (478)
++.++.. +...|++|++.+ ++.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 199 ~~~~l~~-----------~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~~~~ 248 (321)
T 3c1o_A 199 TIKVACD-----------PRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPDEQ 248 (321)
T ss_dssp HHHHHHC-----------GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEECHHH
T ss_pred HHHHHhC-----------ccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCCHHH
Confidence 9999872 234578888875 589999999999999999988777777543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-29 Score=242.89 Aligned_cols=235 Identities=14% Similarity=0.164 Sum_probs=177.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--ccc-----cccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSH-----LLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
||+|+|||||||||++++++|+++|++ |++++|+.+.. ... .....+++++++|++|.+++.++++++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 82 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHP-TFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI 82 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCC-EEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEE
Confidence 578999999999999999999999998 99999876421 000 1134689999999999999999999999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhH
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
|+|+.. ++.++.+++++|++.| ++|||+ |+ +|.. .+|..+..|. .+.| .+|
T Consensus 83 ~~a~~~---------------~~~~~~~l~~aa~~~g~v~~~v~-S~----~g~~----~~~~~~~~p~---~~~y-~sK 134 (308)
T 1qyc_A 83 STVGSL---------------QIESQVNIIKAIKEVGTVKRFFP-SE----FGND----VDNVHAVEPA---KSVF-EVK 134 (308)
T ss_dssp ECCCGG---------------GSGGGHHHHHHHHHHCCCSEEEC-SC----CSSC----TTSCCCCTTH---HHHH-HHH
T ss_pred ECCcch---------------hhhhHHHHHHHHHhcCCCceEee-cc----cccC----ccccccCCcc---hhHH-HHH
Confidence 999842 1456789999999998 999984 43 3321 1333333332 2568 999
Q ss_pred HHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHH
Q 011770 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a 242 (478)
..+|+++++ .+++++++||+.++|+....+.... .....+....++|+++..++|+|++|++++++.+
T Consensus 135 ~~~e~~~~~-----------~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~ 202 (308)
T 1qyc_A 135 AKVRRAIEA-----------EGIPYTYVSSNCFAGYFLRSLAQAG-LTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKA 202 (308)
T ss_dssp HHHHHHHHH-----------HTCCBEEEECCEEHHHHTTTTTCTT-CSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHh-----------cCCCeEEEEeceecccccccccccc-ccCCCCCceEEecCCCceEEEecHHHHHHHHHHH
Confidence 999999865 3678999999999886432211100 0011233345678899999999999999999988
Q ss_pred HhcccCCCCCCCCCCCCCCceEEecC-CCCCCHHHHHHHHHHhcCCCCCcccCChH
Q 011770 243 SMGLLDDIPGQKGRPIASGQPYFVSD-GFPINTFEFIGPLLKTLDYDLPKSWLAVP 297 (478)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~g~~yni~~-g~~~s~~e~~~~i~~~lg~~~~~~~lp~~ 297 (478)
++ .+...|++|++.+ ++.+|+.|+++.+.+.+|.+.+...+|..
T Consensus 203 l~-----------~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~ 247 (308)
T 1qyc_A 203 VD-----------DPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEE 247 (308)
T ss_dssp SS-----------CGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHH
T ss_pred Hh-----------CccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCCHH
Confidence 76 2234577888875 57899999999999999998777777753
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=221.21 Aligned_cols=235 Identities=20% Similarity=0.190 Sum_probs=174.1
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHh
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
|..+.++++++|+|+||||+|+||++++++|+++|++ |++++|+....... . ....++.++.+|++|++++++++
T Consensus 1 m~~~~~~~~~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 79 (255)
T 1fmc_A 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_dssp CCCGGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCccCCCCCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHH
Confidence 5555556678899999999999999999999999998 99999875421100 0 11346889999999999998887
Q ss_pred c-------CcCEEEEcccCCCCc---hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCC
Q 011770 77 R-------GVDCVFHVASYGMSG---KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~---~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
+ ++|+|||+|+..... .+..+++..+++|+.|+.++++++. +.+.+++|++||..++.+.
T Consensus 80 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 153 (255)
T 1fmc_A 80 DFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN------ 153 (255)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC------
Confidence 6 899999999965432 2344567888999999999999886 4567899999998774211
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeC
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g 221 (478)
.+ .+.|+.||...|.+++.+..+ + ...+++++++||+.++++.... ..+.+...+..+.+
T Consensus 154 ------~~----~~~Y~~sK~a~~~~~~~~~~~-~---~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----- 214 (255)
T 1fmc_A 154 ------IN----MTSYASSKAAASHLVRNMAFD-L---GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP----- 214 (255)
T ss_dssp ------TT----CHHHHHHHHHHHHHHHHHHHH-H---HTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCS-----
T ss_pred ------CC----CcccHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEecccCcchhhhhccChHHHHHHHhcCC-----
Confidence 11 267999999999998776431 1 1358999999999999985332 23444444443332
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
...+.+++|+|++++.++... .....|++|++++|...|+
T Consensus 215 ----~~~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 215 ----IRRLGQPQDIANAALFLCSPA---------ASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp ----SCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTSCCCC
T ss_pred ----cccCCCHHHHHHHHHHHhCCc---------cccCCCcEEEECCceeccC
Confidence 235789999999999888621 1234688999999988774
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=219.93 Aligned_cols=226 Identities=19% Similarity=0.131 Sum_probs=166.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVF 83 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~Vi 83 (478)
.++++|+++||||+|+||++++++|+++|++ |++++|+............+++++.+|++|.++++++++ ++|+||
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi 81 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLV 81 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEE
Confidence 3467889999999999999999999999998 999998754211111122467888999999999999987 479999
Q ss_pred EcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 84 HVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 84 HlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
|+|+...... +..+.+..+++|+.|+.++++++.+. + .+++|++||..++.+.+ +
T Consensus 82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------~---- 145 (244)
T 1cyd_A 82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP------------N---- 145 (244)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT------------T----
T ss_pred ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCC------------C----
Confidence 9999654321 23456778899999999999988764 5 57999999988742211 1
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
...|+.||...|.+++.+..+ + +..+++++++||+.++|+.... ..+.++..+..+. ..++++|+
T Consensus 146 ~~~Y~~sK~a~~~~~~~~a~~-~---~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 212 (244)
T 1cyd_A 146 LITYSSTKGAMTMLTKAMAME-L---GPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERH---------PLRKFAEV 212 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHS---------TTSSCBCH
T ss_pred cchhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEecCcccCccccccccCHHHHHHHHhcC---------CccCCCCH
Confidence 267999999999999876431 1 1368999999999999985321 1123333333322 23689999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+|+|++++.++... .....|+.+++.+|..
T Consensus 213 ~dva~~~~~l~~~~---------~~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 213 EDVVNSILFLLSDR---------SASTSGGGILVDAGYL 242 (244)
T ss_dssp HHHHHHHHHHHSGG---------GTTCCSSEEEESTTGG
T ss_pred HHHHHHHHHHhCch---------hhcccCCEEEECCCcc
Confidence 99999999988631 1235688999988754
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=221.91 Aligned_cols=243 Identities=17% Similarity=0.181 Sum_probs=179.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+.+++|+|+||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.++++++++
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3467889999999999999999999999998 99998864321100 0111268999999999999988876
Q ss_pred -CcCEEEEcccCCCC------chhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 -GVDCVFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 -~~D~ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+||.... ..+..+.+..+++|+.|+.++++++.+. +.+++|++||..++.+..
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------- 161 (278)
T 2bgk_A 91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE--------- 161 (278)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT---------
T ss_pred CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC---------
Confidence 78999999996432 1123456778999999999999999874 567999999998743211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---HHHHHHHHHcCCCCeeeCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~~~~i~~~~~g~~~~~~g~g 223 (478)
.....|+.||...|.+++.+..+ + ...|++++++||+.++|+..... .+.....+.... +
T Consensus 162 ------~~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-------~ 224 (278)
T 2bgk_A 162 ------GVSHVYTATKHAVLGLTTSLCTE-L---GEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQA-------A 224 (278)
T ss_dssp ------TSCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHT-------C
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcc-------c
Confidence 01257999999999998776431 1 13689999999999999975432 123333322211 1
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhc
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTL 285 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~l 285 (478)
.....+++++|+|++++.++... .....|+.|++.+|..+++.|+++.+.+.+
T Consensus 225 ~~~~~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 225 NLKGTLLRAEDVADAVAYLAGDE---------SKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp SSCSCCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred ccccccCCHHHHHHHHHHHcCcc---------cccCCCCEEEECCcccccCCccchhhhhhc
Confidence 12346899999999999888521 123568999999999999999998876643
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-27 Score=224.60 Aligned_cols=234 Identities=17% Similarity=0.103 Sum_probs=162.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc----CcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR----GVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~----~~D~ViHlA 86 (478)
||+||||||+||||++++++|+++|++ |++++|+++... . .+++|++|.++++++++ ++|+|||+|
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~-V~~~~r~~~~~~----~-----~~~~D~~~~~~~~~~~~~~~~~~d~vi~~A 70 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHT-VIGIDRGQADIE----A-----DLSTPGGRETAVAAVLDRCGGVLDGLVCCA 70 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSSEE----C-----CTTSHHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEeCChhHcc----c-----cccCCcccHHHHHHHHHHcCCCccEEEECC
Confidence 468999999999999999999999998 999998765211 1 15789999999998886 899999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccC-------CCCCCCCC---CCC
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVN-------GNESLPYF---PID 152 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~-------~~E~~p~~---p~~ 152 (478)
+.... ..+++..+++|+.|+.+++++|.+. +.+++|++||..++.+.....+ .+|+.+.. ...
T Consensus 71 g~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (255)
T 2dkn_A 71 GVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQG 147 (255)
T ss_dssp CCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccccC
Confidence 97542 2346778999999999999988875 5689999999998644321111 11111100 000
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
.+.+.|+.||...|.+++.+..+ + ...+++++++||+.++||.....++. ...+....... + ..++++|+
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~~~~~-~---~~~gi~v~~v~pg~v~~~~~~~~~~~----~~~~~~~~~~~-~-~~~~~~~~ 217 (255)
T 2dkn_A 148 QTHLAYAGSKYAVTCLARRNVVD-W---AGRGVRLNVVAPGAVETPLLQASKAD----PRYGESTRRFV-A-PLGRGSEP 217 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHH-H---HHTTCEEEEEEECCBCSHHHHHHHHC----TTTHHHHHSCC-C-TTSSCBCH
T ss_pred CcchhHHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEcCCcccchhhhhcccc----hhhHHHHHHHH-H-HhcCCCCH
Confidence 12368999999999999876431 0 02589999999999999843211110 00000000011 2 44689999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHH
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE 276 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e 276 (478)
+|+|++++.+++.. .....|+.||+++|..++++|
T Consensus 218 ~dva~~~~~l~~~~---------~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 218 REVAEAIAFLLGPQ---------ASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp HHHHHHHHHHHSGG---------GTTCCSCEEEESTTHHHHHCT
T ss_pred HHHHHHHHHHhCCC---------cccceeeEEEecCCeEeeeec
Confidence 99999999998731 113568999999987766543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=223.56 Aligned_cols=242 Identities=17% Similarity=0.052 Sum_probs=170.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+....... .....+++++++|++|.++++++++ ++|
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 81 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDT-VIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVD 81 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCC
Confidence 45789999999999999999999999998 99999876532111 1123578999999999999988876 789
Q ss_pred EEEEcccCCCC----chhhhchhhhhHhhhHH----HHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMS----GKEMLQFGRVDEVNING----TCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~----~~~~~~~~~~~~vNv~g----t~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+||.... ..+..+++..+++|+.| ++++++.+++.+.+++|++||...+.+. .+
T Consensus 82 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~-- 147 (281)
T 3m1a_A 82 VLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSF------------AG-- 147 (281)
T ss_dssp EEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC------------TT--
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCC------------CC--
Confidence 99999996432 22334567789999999 5555556677788899999998764221 11
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-------cHHHHHHHHHcCCCCeeeCCCCc
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-------HLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-------~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
.++|+.||...|.+++.+..+ + ...|++++++||+.|++|.... ..+.+.......... .....
T Consensus 148 --~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 218 (281)
T 3m1a_A 148 --FSAYSATKAALEQLSEGLADE-V---APFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQL---VQGSD 218 (281)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHH---HHC--
T ss_pred --chHHHHHHHHHHHHHHHHHHH-h---hccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHH---Hhhcc
Confidence 268999999999999876531 1 1368999999999998875221 111111111111101 11123
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLD 286 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg 286 (478)
..++.+++|+|++++.+++. ...+..||++++....+.+....+.+.++
T Consensus 219 ~~~~~~~~dva~a~~~~~~~------------~~~~~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 219 GSQPGDPAKAAAAIRLALDT------------EKTPLRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp ---CBCHHHHHHHHHHHHHS------------SSCCSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhC------------CCCCeEEecCchHHHHHHHHHHHHHHHHH
Confidence 45788999999999999873 23567899998777777777766666543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=207.32 Aligned_cols=205 Identities=14% Similarity=0.066 Sum_probs=144.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
..++||+||||||+|+||++++++|+++| ++ |++++|++... ......+++++++|++|.+++.++++++|+|||+
T Consensus 19 ~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~-V~~~~R~~~~~--~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 19 FQGHMKNVLILGAGGQIARHVINQLADKQTIK-QTLFARQPAKI--HKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHTTCTTEE-EEEEESSGGGS--CSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred ecCcccEEEEEeCCcHHHHHHHHHHHhCCCce-EEEEEcChhhh--cccccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 34667899999999999999999999999 77 99999876532 1223457999999999999999999999999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCcccc--CCCCCCCCCCCCccCCchHhhHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIV--NGNESLPYFPIDEHVDSYGRSKS 163 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~--~~~E~~p~~p~~~~~~~Y~~sK~ 163 (478)
|+... ....+.+++++|++.+++++|++||..+| +..+.. +.+|..+ ..+...|.
T Consensus 96 a~~~~--------------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~ 152 (236)
T 3qvo_A 96 LTGED--------------LDIQANSVIAAMKACDVKRLIFVLSLGIY-DEVPGKFVEWNNAVI--------GEPLKPFR 152 (236)
T ss_dssp CCSTT--------------HHHHHHHHHHHHHHTTCCEEEEECCCCC-------------------------CGGGHHHH
T ss_pred CCCCc--------------hhHHHHHHHHHHHHcCCCEEEEEecceec-CCCCcccccchhhcc--------cchHHHHH
Confidence 97411 01357799999999999999999999984 332221 1222221 22344555
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS 243 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~ 243 (478)
.+|+.+. ..+++++++||+.++++..... ............+++++|+|++++.++
T Consensus 153 ~~~~~l~-----------~~gi~~~~vrPg~i~~~~~~~~-------------~~~~~~~~~~~~~i~~~DvA~~i~~ll 208 (236)
T 3qvo_A 153 RAADAIE-----------ASGLEYTILRPAWLTDEDIIDY-------------ELTSRNEPFKGTIVSRKSVAALITDII 208 (236)
T ss_dssp HHHHHHH-----------TSCSEEEEEEECEEECCSCCCC-------------EEECTTSCCSCSEEEHHHHHHHHHHHH
T ss_pred HHHHHHH-----------HCCCCEEEEeCCcccCCCCcce-------------EEeccCCCCCCcEECHHHHHHHHHHHH
Confidence 6666653 3689999999999999854321 011111112246899999999999998
Q ss_pred hcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 244 MGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 244 ~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.. .....|+.|++++++.
T Consensus 209 ~~----------~~~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 209 DK----------PEKHIGENIGINQPGT 226 (236)
T ss_dssp HS----------TTTTTTEEEEEECSSC
T ss_pred cC----------cccccCeeEEecCCCC
Confidence 73 2224689999998754
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=211.17 Aligned_cols=226 Identities=19% Similarity=0.127 Sum_probs=164.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVF 83 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~Vi 83 (478)
+++++++|+||||+|+||++++++|+++|++ |++++|+............+++++++|++|.++++++++ ++|+||
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi 81 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLV 81 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEE
Confidence 3467899999999999999999999999998 999998654211111122467888999999999999886 589999
Q ss_pred EcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 84 HVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 84 HlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
|+|+...... ...+.+..+++|+.++.++++++.+. + .+++|++||...+.+. .+
T Consensus 82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~---- 145 (244)
T 3d3w_A 82 NNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------TN---- 145 (244)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TT----
T ss_pred ECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC------------CC----
Confidence 9999754321 23456778999999999999988764 5 6799999998763211 11
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
.+.|+.||...|.+++.+..+ + +..+++++++||+.|+++..... .+.....+..+. ...+++++
T Consensus 146 ~~~Y~~sK~a~~~~~~~la~e-~---~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 212 (244)
T 3d3w_A 146 HSVYCSTKGALDMLTKVMALE-L---GPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRI---------PLGKFAEV 212 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTC---------TTCSCBCH
T ss_pred CchHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEeccccccchhhhccChHHHHHHHhhC---------CCCCCcCH
Confidence 267999999999999876431 1 13689999999999999853210 011112222221 23478999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+|+|++++.++... .....|+.|++.+|..
T Consensus 213 ~dva~~~~~l~~~~---------~~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 213 EHVVNAILFLLSDR---------SGMTTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHcCcc---------ccCCCCCEEEECCCcc
Confidence 99999999988631 1235789999988754
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=214.43 Aligned_cols=230 Identities=19% Similarity=0.154 Sum_probs=160.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--c-------CCCeEEEEecCCCHHHHHHHh
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--I-------NHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~-------~~~v~~v~gDl~d~~~l~~~l 76 (478)
++++++|+||||+|+||++++++|+++|++ |++++|+....... .. . ..++.++++|++|.+++++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGAT-VAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL 82 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence 467789999999999999999999999998 99999875421110 00 0 146889999999999988887
Q ss_pred cC-------c-CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccc
Q 011770 77 RG-------V-DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEI 139 (478)
Q Consensus 77 ~~-------~-D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~ 139 (478)
++ + |+|||+|+..... .+..+++..+++|+.|+.++++++.+. + ..++|++||...+++..
T Consensus 83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 160 (264)
T 2pd6_A 83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNV-- 160 (264)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCT--
T ss_pred HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCC--
Confidence 64 3 9999999975432 134466788999999999999998765 4 56999999987643321
Q ss_pred cCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCee
Q 011770 140 VNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFK 219 (478)
Q Consensus 140 ~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~ 219 (478)
+ ...|+.||...|.+++.+..+ + ...+++++++||+.++++......+.+...+..+
T Consensus 161 ----------~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~----- 217 (264)
T 2pd6_A 161 ----------G----QTNYAASKAGVIGLTQTAARE-L---GRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEM----- 217 (264)
T ss_dssp ----------T----BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSCC----------CTGGG-----
T ss_pred ----------C----ChhhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeecccccchhhcCHHHHHHHHHh-----
Confidence 1 267999999999988776431 1 1368999999999999997543222221111111
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHH
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE 276 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e 276 (478)
.....+.+++|+|++++.++... .....|+.+++.+|..++...
T Consensus 218 ----~~~~~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gg~~~~~~~ 261 (264)
T 2pd6_A 218 ----IPMGHLGDPEDVADVVAFLASED---------SGYITGTSVEVTGGLFMAENL 261 (264)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTC------
T ss_pred ----CCCCCCCCHHHHHHHHHHHcCCc---------ccCCCCCEEEECCCceecccc
Confidence 11235789999999999887631 124578999999887765443
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-26 Score=217.80 Aligned_cols=238 Identities=18% Similarity=0.179 Sum_probs=171.1
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
||+.+++|++|||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|+++++++++
T Consensus 2 mm~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 2 MMKRLEGKSALITGSARGIGRAFAEAYVREGAT-VAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp --CTTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 455678899999999999999999999999998 99999865421111 1123568899999999999988876
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||...... +..+++..+++|+.|+.++++++.+. + -.++|++||...+.+..
T Consensus 81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 150 (259)
T 4e6p_A 81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEA---------- 150 (259)
T ss_dssp SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCC----------
Confidence 7999999999754322 33466788899999999999998754 2 35899999988743211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCC---CCeeeCCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGL---VPFKIGEPS 224 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~---~~~~~g~g~ 224 (478)
....|+.||...|.+++.+..+ + ...|+++.+++|+.|++|..... ..+........ .....++..
T Consensus 151 ------~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 219 (259)
T 4e6p_A 151 ------LVAIYCATKAAVISLTQSAGLD-L---IKHRINVNAIAPGVVDGEHWDGV-DALFARYENRPRGEKKRLVGEAV 219 (259)
T ss_dssp ------TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCSTTHHHH-HHHHHHHHTCCTTHHHHHHHHHS
T ss_pred ------CChHHHHHHHHHHHHHHHHHHH-h---hhcCCEEEEEEECCCccchhhhh-hhhhhhhccCChHHHHHHHhccC
Confidence 1267999999999999876531 1 13689999999999999864321 11222222111 111223334
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
....+.+++|+|++++.++.. ......|++|++.+|..+|
T Consensus 220 p~~r~~~~~dva~~v~~L~s~---------~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 220 PFGRMGTAEDLTGMAIFLASA---------ESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp TTSSCBCTHHHHHHHHHTTSG---------GGTTCCSCEEEESTTSSCC
T ss_pred CCCCCcCHHHHHHHHHHHhCC---------ccCCCCCCEEEECcChhcC
Confidence 556899999999999877642 1224579999999987654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=201.58 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=148.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHH-HcCCceEEEEecCCC-CcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELV-RRGAYQVRAFDLRTN-SPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~-~~G~~~V~~l~r~~~-~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
||++|+||||+|+||++++++|+ ++|++ |++++|++. ..........+++++++|++|.+++.++++++|+|||+|+
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag 82 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMH-ITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM 82 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCE-EEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCce-EEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence 35679999999999999999999 89998 999998754 2111101456799999999999999999999999999998
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC-chHhhHHHHH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD-SYGRSKSVAE 166 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~-~Y~~sK~~aE 166 (478)
.. |+. ++++++++++.+++|+|++||..++.+.+.. ...+..+ ... .|+.+|..+|
T Consensus 83 ~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~-~~~~~~~------~~~~~y~~~K~~~e 139 (221)
T 3r6d_A 83 ES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA-LEKWTFD------NLPISYVQGERQAR 139 (221)
T ss_dssp CC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH-HHHHHHH------TSCHHHHHHHHHHH
T ss_pred CC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc-ccccccc------ccccHHHHHHHHHH
Confidence 42 445 9999999999999999999999884321110 0000000 012 7999999999
Q ss_pred HHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHH--h
Q 011770 167 QLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS--M 244 (478)
Q Consensus 167 ~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~--~ 244 (478)
++++. .+++++++||+.++++.... ..............+++.+|+|++++.++ .
T Consensus 140 ~~~~~-----------~~i~~~~vrpg~v~~~~~~~------------~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~ 196 (221)
T 3r6d_A 140 NVLRE-----------SNLNYTILRLTWLYNDPEXT------------DYELIPEGAQFNDAQVSREAVVKAIFDILHAA 196 (221)
T ss_dssp HHHHH-----------SCSEEEEEEECEEECCTTCC------------CCEEECTTSCCCCCEEEHHHHHHHHHHHHTCS
T ss_pred HHHHh-----------CCCCEEEEechhhcCCCCCc------------ceeeccCCccCCCceeeHHHHHHHHHHHHHhc
Confidence 98864 47899999999999983221 11111111112234899999999999998 5
Q ss_pred cccCCCCCCCCCCCCCCceEEecCCC
Q 011770 245 GLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 245 ~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
. .....++.+.++++.
T Consensus 197 ~----------~~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 197 D----------ETPFHRTSIGVGEPG 212 (221)
T ss_dssp C----------CGGGTTEEEEEECTT
T ss_pred C----------hhhhhcceeeecCCC
Confidence 2 223456778887543
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-25 Score=209.69 Aligned_cols=220 Identities=17% Similarity=0.138 Sum_probs=167.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+++++|++|||||+|+||++++++|+++|++ |++++|+... .....+.++++|++|+++++++++ ++
T Consensus 24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~-----~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 97 (260)
T 3un1_A 24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYR-VVATSRSIKP-----SADPDIHTVAGDISKPETADRIVREGIERFGRI 97 (260)
T ss_dssp HHTTCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCCC-----CSSTTEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChhh-----cccCceEEEEccCCCHHHHHHHHHHHHHHCCCC
Confidence 3467889999999999999999999999998 9999987652 223478999999999999988876 79
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+||...... +..+++..+++|+.|+.++++++ ++.+..++|++||..++ ... +..|
T Consensus 98 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~-~~~---------~~~~- 166 (260)
T 3un1_A 98 DSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVD-QPM---------VGMP- 166 (260)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTT-SCB---------TTCC-
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhc-cCC---------CCCc-
Confidence 99999999754322 34456788899999999999988 45667899999998762 111 1112
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||...|.+++.+..+. ...|+++.+++|+.|++|....... ....... ....+.+
T Consensus 167 ---~~~Y~~sKaa~~~l~~~la~e~----~~~gI~vn~v~PG~v~t~~~~~~~~---~~~~~~~---------p~~r~~~ 227 (260)
T 3un1_A 167 ---SALASLTKGGLNAVTRSLAMEF----SRSGVRVNAVSPGVIKTPMHPAETH---STLAGLH---------PVGRMGE 227 (260)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHT----TTTTEEEEEEEECCBCCTTSCGGGH---HHHHTTS---------TTSSCBC
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHh----CcCCeEEEEEeecCCCCCCCCHHHH---HHHhccC---------CCCCCcC
Confidence 2679999999999998765321 2468999999999999996543211 2222222 2346778
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
++|+|++++.+.+ .....|+++++.+|...+
T Consensus 228 ~~dva~av~~L~~-----------~~~itG~~i~vdGG~~~~ 258 (260)
T 3un1_A 228 IRDVVDAVLYLEH-----------AGFITGEILHVDGGQNAG 258 (260)
T ss_dssp HHHHHHHHHHHHH-----------CTTCCSCEEEESTTGGGC
T ss_pred HHHHHHHHHHhcc-----------cCCCCCcEEEECCCeecc
Confidence 9999999998844 335689999999886543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-25 Score=209.76 Aligned_cols=224 Identities=18% Similarity=0.193 Sum_probs=163.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc---cCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL---INHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~---~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... .. ....+.++.+|++|.++++++++
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGST-VIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL 82 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 367789999999999999999999999998 99999865421110 00 13468899999999999988886
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+..... .+..+.+..+++|+.|+.++++++ ++.+.+++|++||...+++..
T Consensus 83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 152 (248)
T 2pnf_A 83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNV---------- 152 (248)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCC----------
Confidence 799999999965432 133456778999999997666654 456778999999987644321
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
+ ...|+.||...|.+++.+..+ + ...+++++++||+.++++...............+.+ ..
T Consensus 153 --~----~~~Y~~sK~a~~~~~~~la~e-~---~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~ 213 (248)
T 2pnf_A 153 --G----QVNYSTTKAGLIGFTKSLAKE-L---APRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIP---------LG 213 (248)
T ss_dssp --T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCT---------TS
T ss_pred --C----CchHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEeceecCchhhhccHHHHHHHHhcCC---------CC
Confidence 1 257999999999988766431 1 135899999999999998654332223233322221 23
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+++++|+|+++..++... .....|++|++.+|.
T Consensus 214 ~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gg~ 247 (248)
T 2pnf_A 214 RFGSPEEVANVVLFLCSEL---------ASYITGEVIHVNGGM 247 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTC
T ss_pred CccCHHHHHHHHHHHhCch---------hhcCCCcEEEeCCCc
Confidence 5889999999999888631 123568999998763
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=207.26 Aligned_cols=228 Identities=19% Similarity=0.164 Sum_probs=165.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++++|+|+||||+|+||++++++|+++|++ |++++|+....... .....+++++++|++|.++++++++
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGAR-VIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999998 99999875421100 0113468999999999999988876
Q ss_pred --CcCEEEEcccCCC-Cc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 --GVDCVFHVASYGM-SG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 --~~D~ViHlAa~~~-~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+|+... .. .+..+....+++|+.|+.++++++.+ .+..++|++||...+.+.
T Consensus 88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 157 (260)
T 3awd_A 88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN---------- 157 (260)
T ss_dssp HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC----------
Confidence 6899999999654 11 12334577889999999999999875 366799999998763221
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-Cc-HHHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-RH-LPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-~~-~~~~i~~~~~g~~~~~~g~g~ 224 (478)
+..| ...|+.||...|.+++.+..+ + ...+++++++||+.+++|... .. .+.+...+..+.+
T Consensus 158 ~~~~----~~~Y~~sK~a~~~~~~~l~~e-~---~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~-------- 221 (260)
T 3awd_A 158 RPQQ----QAAYNASKAGVHQYIRSLAAE-W---APHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTP-------- 221 (260)
T ss_dssp SSSC----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCT--------
T ss_pred CCCC----ccccHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCC--------
Confidence 1111 267999999999999876531 1 136899999999999999754 11 1233333333321
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
...+++++|+|++++.++... .....|+.|++.+|..
T Consensus 222 -~~~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gg~~ 258 (260)
T 3awd_A 222 -MGRVGQPDEVASVVQFLASDA---------ASLMTGAIVNVDAGFT 258 (260)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTTT
T ss_pred -cCCCCCHHHHHHHHHHHhCch---------hccCCCcEEEECCcee
Confidence 235889999999999887631 1235788999988753
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=218.74 Aligned_cols=241 Identities=15% Similarity=0.085 Sum_probs=173.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc-----cCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-----INHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~-----~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
+++++|+|+||||+|+||++++++|+++|++ |++++|+......... ...++.++++|++|.+++.++++
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999998 9999987542111000 04568999999999999888776
Q ss_pred ---CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++.+. +..++|++||...+.+..
T Consensus 101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------- 172 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG-------- 172 (302)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT--------
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCC--------
Confidence 459999999964331 233456788999999999999988643 456999999987643211
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHH--HHHHHHHcCCCCeeeCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLP--RIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~--~~i~~~~~g~~~~~~g~ 222 (478)
+ ...|+.||...|.+++.+..+ + ...|++++++||+.+++++... ..+ .....+..+.+
T Consensus 173 ----~----~~~Y~~sK~a~~~~~~~la~~-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p------ 234 (302)
T 1w6u_A 173 ----F----VVPSASAKAGVEAMSKSLAAE-W---GKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP------ 234 (302)
T ss_dssp ----T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT------
T ss_pred ----C----cchhHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCC------
Confidence 1 267999999999999876531 1 1368999999999999984321 111 11122222221
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLD 286 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg 286 (478)
...+.+++|+|++++.++... .....|+.|++.+|..+++.|+++.+.+..|
T Consensus 235 ---~~~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g 286 (302)
T 1w6u_A 235 ---CGRLGTVEELANLAAFLCSDY---------ASWINGAVIKFDGGEEVLISGEFNDLRKVTK 286 (302)
T ss_dssp ---TSSCBCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred ---cCCCCCHHHHHHHHHHHcCCc---------ccccCCCEEEECCCeeeccCCccccchhhcc
Confidence 235789999999999887521 1234689999999988888888777766654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-25 Score=209.96 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=165.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--c-CCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--I-NHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~-~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... .. . ..++.++++|++|.++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAH-IVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSS 82 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 367789999999999999999999999998 99999875421110 00 0 3468899999999999988876
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+++..+++|+.|+.++++++.+ .+.+++|++||...+.+.
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 151 (263)
T 3ai3_A 83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL----------- 151 (263)
T ss_dssp HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC-----------
Confidence 789999999965322 13345678899999999999998853 467899999998874221
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-----------HHHHHHHcCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-----------RIVSLAKLGLV 216 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-----------~~i~~~~~g~~ 216 (478)
| ....|+.||...|.+++.+..+ + ..+|++++++||+.|++|......+ .....+..+.
T Consensus 152 --~---~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (263)
T 3ai3_A 152 --W---YEPIYNVTKAALMMFSKTLATE-V---IKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH- 221 (263)
T ss_dssp --T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH-
T ss_pred --C---CcchHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC-
Confidence 1 1257999999999998776431 1 1368999999999999985322111 1111111110
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.....+.+++|+|++++.++.. ......|+.|++.+|...+
T Consensus 222 -------~p~~~~~~~~dvA~~~~~l~s~---------~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 222 -------APIKRFASPEELANFFVFLCSE---------RATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp -------CTTCSCBCHHHHHHHHHHHTST---------TCTTCCSCEEEESTTCCCC
T ss_pred -------CCCCCCcCHHHHHHHHHHHcCc---------cccCCCCcEEEECCCcccc
Confidence 1224688999999999988752 1223568999999887655
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-25 Score=213.15 Aligned_cols=238 Identities=12% Similarity=0.112 Sum_probs=161.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-------cccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-------LLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-------~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 81 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH
Confidence 367789999999999999999999999998 99999875321100 0112358899999999999988887
Q ss_pred ----CcCEEEEcccCCCCch--------hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccce-eeCCcccc
Q 011770 78 ----GVDCVFHVASYGMSGK--------EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNV-VFGGKEIV 140 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~--------~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v-~~g~~~~~ 140 (478)
++|+|||+||...... +..+++..+++|+.|+.++++++.+. + .++|++||... +.+.
T Consensus 82 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~---- 156 (278)
T 1spx_A 82 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHAT---- 156 (278)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCC----
T ss_pred HHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCC----
Confidence 7999999999643221 34456788999999999999998865 6 79999999875 3211
Q ss_pred CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH---HHH------HHHH
Q 011770 141 NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL---PRI------VSLA 211 (478)
Q Consensus 141 ~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~---~~~------i~~~ 211 (478)
| ....|+.||...|.+++....+ + ...|++++++||+.|+++...... +.. ...+
T Consensus 157 ---------~---~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 220 (278)
T 1spx_A 157 ---------P---DFPYYSIAKAAIDQYTRNTAID-L---IQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATM 220 (278)
T ss_dssp ---------T---TSHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBCCCC--------------HHHHHHH
T ss_pred ---------C---CccHHHHHHHHHHHHHHHHHHH-H---HhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHH
Confidence 1 1257999999999998765421 1 136899999999999998643210 111 1212
Q ss_pred HcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCC-CCCceEEecCCCCCCHHHHHHHHHHhc
Q 011770 212 KLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPI-ASGQPYFVSDGFPINTFEFIGPLLKTL 285 (478)
Q Consensus 212 ~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~-~~g~~yni~~g~~~s~~e~~~~i~~~l 285 (478)
.... ....+.+.+|+|++++.++... ... ..|+.|++.+|..++..|+++.+.+.+
T Consensus 221 ~~~~---------p~~~~~~~~dvA~~v~~l~s~~---------~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 221 KECV---------PAGVMGQPQDIAEVIAFLADRK---------TSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp HHHC---------TTSSCBCHHHHHHHHHHHHCHH---------HHTTCCSCEEEESTTGGGC------------
T ss_pred HhcC---------CCcCCCCHHHHHHHHHHHcCcc---------ccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 1111 1135789999999999887520 112 568999999999999999998887653
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=204.33 Aligned_cols=215 Identities=21% Similarity=0.224 Sum_probs=163.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc------CcCEEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR------GVDCVFH 84 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~------~~D~ViH 84 (478)
+|+|+||||+|+||++++++|+++|++ |++++|+.. ...+.++++|++|.++++++++ ++|+|||
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~ 72 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLRRE--------GEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVS 72 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCC--------SSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEccCcc--------ccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEE
Confidence 579999999999999999999999999 999998754 2346889999999999998887 7899999
Q ss_pred cccCCCCchh--------hhchhhhhHhhhHHHHHHHHHHHHcCC----------CeEEEEeccceeeCCccccCCCCCC
Q 011770 85 VASYGMSGKE--------MLQFGRVDEVNINGTCHVIEACLEFGI----------QRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 85 lAa~~~~~~~--------~~~~~~~~~vNv~gt~nll~aa~~~~v----------~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
+|+....... ..+.+..+++|+.++.++++++.+... .++|++||...+.+..
T Consensus 73 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------- 143 (242)
T 1uay_A 73 AAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI--------- 143 (242)
T ss_dssp CCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT---------
T ss_pred cccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC---------
Confidence 9996543211 115677889999999999999987521 2899999998743211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
+ ...|+.||...|.+++....+ + ...+++++++||+.++|+......+.+...+..+.+. .
T Consensus 144 ---~----~~~Y~~sK~a~~~~~~~l~~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~--------~ 204 (242)
T 1uay_A 144 ---G----QAAYAASKGGVVALTLPAARE-L---AGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPF--------P 204 (242)
T ss_dssp ---T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCS--------S
T ss_pred ---C----CchhhHHHHHHHHHHHHHHHH-H---hhcCcEEEEEEeccCcchhhhccchhHHHHHHhhCCC--------c
Confidence 1 267999999999988765431 1 1358999999999999986443333333444433221 0
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
..+++++|+|++++.++.. ....|+.|++.+|..++
T Consensus 205 ~~~~~~~dva~~~~~l~~~-----------~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 205 PRLGRPEEYAALVLHILEN-----------PMLNGEVVRLDGALRMA 240 (242)
T ss_dssp CSCCCHHHHHHHHHHHHHC-----------TTCCSCEEEESTTCCCC
T ss_pred ccCCCHHHHHHHHHHHhcC-----------CCCCCcEEEEcCCeecC
Confidence 3478999999999998872 24678999999887654
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=206.30 Aligned_cols=233 Identities=16% Similarity=0.119 Sum_probs=166.0
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCe-EEEEecCCCHHHHHHHh--
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGV-HCIQGDVVSKIDVEKAA-- 76 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v-~~v~gDl~d~~~l~~~l-- 76 (478)
|...+++++++|+++||||+|+||++++++|+++|++ |++++|+.+..... .....++ .++.+|++|.+++++++
T Consensus 1 m~~~~~~~~~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (254)
T 2wsb_A 1 MDYRTVFRLDGACAAVTGAGSGIGLEICRAFAASGAR-LILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAE 79 (254)
T ss_dssp CCTTTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHH
T ss_pred CCcccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHH
Confidence 6666666788899999999999999999999999998 99999875421100 0112345 88999999999998876
Q ss_pred ----cCcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCC
Q 011770 77 ----RGVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 77 ----~~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
.++|+|||+||...... +..+.+..+++|+.|+.++++++. +.+.+++|++||...+.+.
T Consensus 80 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-------- 151 (254)
T 2wsb_A 80 AEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN-------- 151 (254)
T ss_dssp HHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC--------
Confidence 47899999999754321 233456788999999877777654 4577899999998774321
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~ 222 (478)
|..| .+.|+.||...|.+++.+..+ + ...+++++++||+.++++...... +.....+....
T Consensus 152 --~~~~----~~~Y~~sK~a~~~~~~~~~~~-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~------- 214 (254)
T 2wsb_A 152 --RPQF----ASSYMASKGAVHQLTRALAAE-W---AGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMT------- 214 (254)
T ss_dssp --SSSC----BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTS-------
T ss_pred --CCCc----chHHHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEEecccCchhhhccccChHHHHHHHhcC-------
Confidence 1111 267999999999998776431 1 135899999999999998532110 12222232222
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+++++|+|++++.++... .....|+.+++.+|.
T Consensus 215 --~~~~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 215 --PMGRCGEPSEIAAAALFLASPA---------ASYVTGAILAVDGGY 251 (254)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTG
T ss_pred --CCCCCCCHHHHHHHHHHHhCcc---------cccccCCEEEECCCE
Confidence 1245889999999999887521 123568899998764
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-25 Score=201.75 Aligned_cols=188 Identities=12% Similarity=0.062 Sum_probs=147.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC---cCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG---VDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~---~D~ViHlAa~ 88 (478)
|+|+||||+|+||++++++|+ +|++ |++++|+.. ++.+|++|.+++++++++ +|+|||+|+.
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~-V~~~~r~~~-------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~ 68 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAE-VITAGRHSG-------------DVTVDITNIDSIKKMYEQVGKVDAIVSATGS 68 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSE-EEEEESSSS-------------SEECCTTCHHHHHHHHHHHCCEEEEEECCCC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCe-EEEEecCcc-------------ceeeecCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 589999999999999999999 9998 999998653 468999999999988875 8999999996
Q ss_pred CCCch----hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhh
Q 011770 89 GMSGK----EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 89 ~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~s 161 (478)
..... +..+....+++|+.++.++++++.+. + +++|++||...+.+ ..+ ...|+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~------------~~~----~~~Y~~s 131 (202)
T 3d7l_A 69 ATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDP------------IVQ----GASAAMA 131 (202)
T ss_dssp CCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSC------------CTT----CHHHHHH
T ss_pred CCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCC------------CCc----cHHHHHH
Confidence 53322 22345677899999999999999887 4 69999999866321 111 2679999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALIL 241 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~ 241 (478)
|...|.+++.+..+. ..+++++++||+.++|+... . ++....+++++++|+|++++.
T Consensus 132 K~~~~~~~~~~~~e~-----~~gi~v~~v~pg~v~~~~~~---------~---------~~~~~~~~~~~~~dva~~~~~ 188 (202)
T 3d7l_A 132 NGAVTAFAKSAAIEM-----PRGIRINTVSPNVLEESWDK---------L---------EPFFEGFLPVPAAKVARAFEK 188 (202)
T ss_dssp HHHHHHHHHHHTTSC-----STTCEEEEEEECCBGGGHHH---------H---------GGGSTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-----cCCeEEEEEecCccCCchhh---------h---------hhhccccCCCCHHHHHHHHHH
Confidence 999999998876421 25899999999999998421 1 112234689999999999988
Q ss_pred HHhcccCCCCCCCCCCCCCCceEEe
Q 011770 242 ASMGLLDDIPGQKGRPIASGQPYFV 266 (478)
Q Consensus 242 a~~~l~~~~~~~~~~~~~~g~~yni 266 (478)
+++. ...|++||+
T Consensus 189 ~~~~------------~~~G~~~~v 201 (202)
T 3d7l_A 189 SVFG------------AQTGESYQV 201 (202)
T ss_dssp HHHS------------CCCSCEEEE
T ss_pred hhhc------------cccCceEec
Confidence 7752 356788887
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=205.12 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=152.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+|+||||+|+||++++++|+++|++ |++++++.+...... ....++.++.+|++|.++++++++
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~-V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGAN-IVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF 81 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999998 999954433221110 113568899999999999988776
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++.+ .+.+++|++||...+++.+.
T Consensus 82 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 151 (247)
T 2hq1_A 82 GRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAG---------- 151 (247)
T ss_dssp SCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCC----------
Confidence 789999999975322 13345678899999999998888764 46789999999865443211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
..+|+.||...|.+++.+..+ + ...++++++++|+.+.++......+.....+..+. ....
T Consensus 152 ------~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~ 212 (247)
T 2hq1_A 152 ------QANYAASKAGLIGFTKSIAKE-F---AAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNI---------PLKR 212 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTS---------TTSS
T ss_pred ------CcHhHHHHHHHHHHHHHHHHH-H---HHcCcEEEEEEEEEEeccchhhcchHHHHHHHhhC---------CCCC
Confidence 267999999999998776431 1 13589999999999987642222222223233222 2245
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+++++|+|+++..++... .....|+.|++++|.
T Consensus 213 ~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 213 FGTPEEVANVVGFLASDD---------SNYITGQVINIDGGL 245 (247)
T ss_dssp CBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTC
T ss_pred CCCHHHHHHHHHHHcCcc---------cccccCcEEEeCCCc
Confidence 889999999998887521 123568899998875
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-25 Score=215.27 Aligned_cols=245 Identities=18% Similarity=0.170 Sum_probs=177.5
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--c---CCCeEEEEecCCCHHHHHHHhc
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--I---NHGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~---~~~v~~v~gDl~d~~~l~~~l~ 77 (478)
+++++++|+++||||+|+||++++++|+++|++ |++++|+....... .. . ...+.++++|++|.++++++++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 83 (281)
T 3svt_A 5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVD 83 (281)
T ss_dssp ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHH
T ss_pred CccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 445678899999999999999999999999998 99999875421110 00 1 1268899999999999888776
Q ss_pred -------CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHcC----CCeEEEEeccceeeCCccccC
Q 011770 78 -------GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEFG----IQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 78 -------~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~~----v~r~V~~SS~~v~~g~~~~~~ 141 (478)
++|++||+||.... ..+..+++..+++|+.|+.++++++.+.- -.++|++||...+.+..
T Consensus 84 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---- 159 (281)
T 3svt_A 84 AVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHR---- 159 (281)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCT----
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCC----
Confidence 67999999996221 12334567889999999999999887653 34999999988742211
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCee
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFK 219 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~ 219 (478)
+ ...|+.||...|.+++.+..+ + +..++++.+++|+.|+++..... .+..........+
T Consensus 160 --------~----~~~Y~asK~a~~~l~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p--- 220 (281)
T 3svt_A 160 --------W----FGAYGVTKSAVDHLMQLAADE-L---GASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTP--- 220 (281)
T ss_dssp --------T----CTHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCS---
T ss_pred --------C----ChhHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCC---
Confidence 1 267999999999999776532 1 14679999999999999854321 1122222222222
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC-HHHHHHHHHHhcCCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN-TFEFIGPLLKTLDYD 288 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s-~~e~~~~i~~~lg~~ 288 (478)
...+.+++|+|++++.++... .....|+.+++.+|...+ ..|+.+.+.+.+|.+
T Consensus 221 ------~~r~~~~~dva~~~~~l~s~~---------~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~ 275 (281)
T 3svt_A 221 ------LPRQGEVEDVANMAMFLLSDA---------ASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRD 275 (281)
T ss_dssp ------SSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTT
T ss_pred ------CCCCCCHHHHHHHHHHHhCcc---------cCCCCCCEEEeCCChhcccCCcchhccccccCCc
Confidence 235678999999999887631 224579999999998877 778888888888765
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=207.88 Aligned_cols=234 Identities=17% Similarity=0.137 Sum_probs=168.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
.+++++|+|+||||+|+||++++++|+++|++ |++++|+........ ....++.++++|++|.++++++++
T Consensus 9 ~~~~~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 87 (265)
T 1h5q_A 9 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID 87 (265)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHH
Confidence 34567789999999999999999999999998 999998655321110 114568899999999999888775
Q ss_pred ----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+|+...... +..+.+..+++|+.|+.++++++.+. + .+++|++||..++.+....
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----- 162 (265)
T 1h5q_A 88 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----- 162 (265)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE-----
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc-----
Confidence 4899999999754321 33456678899999999999998754 3 3689999998875432211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
..+..| ...|+.||...|.+++.+..+ + ...+++++++||+.|+++......+..........+
T Consensus 163 ~~~~~~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~-------- 226 (265)
T 1h5q_A 163 LNGSLT----QVFYNSSKAACSNLVKGLAAE-W---ASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIP-------- 226 (265)
T ss_dssp TTEECS----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCT--------
T ss_pred cccccc----ccccHHHHHHHHHHHHHHHHH-H---HhcCcEEEEEecCccccccccccchhHHHHHHhcCc--------
Confidence 011112 367999999999999776431 1 135899999999999998654433333333332221
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
...+++.+|+|++++.++... .....|+.|++.+|..
T Consensus 227 -~~~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 227 -LNRFAQPEEMTGQAILLLSDH---------ATYMTGGEYFIDGGQL 263 (265)
T ss_dssp -TSSCBCGGGGHHHHHHHHSGG---------GTTCCSCEEEECTTGG
T ss_pred -ccCCCCHHHHHHHHHhhccCc---------hhcCcCcEEEecCCEe
Confidence 134789999999999887621 1235789999998854
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-24 Score=203.36 Aligned_cols=223 Identities=15% Similarity=0.152 Sum_probs=169.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||+|+||++++++|+++|++ |+++++++...... .....++.++++|++|.++++++++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYN-VAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF 80 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999999999 99988765322111 1123468899999999999988876
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+||..... .+..+++..+++|+.|+.++++++ ++.+..++|++||...+++.+
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 149 (246)
T 3osu_A 81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNP----------- 149 (246)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCC-----------
Confidence 789999999975332 234466788999999999999999 556677999999987754321
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
+ ...|+.||...|.+.+.+..+ + ...|+++.+++|+.|+++......+.....+..+.+. ..
T Consensus 150 -~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~---------~r 211 (246)
T 3osu_A 150 -G----QANYVATKAGVIGLTKSAARE-L---ASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPL---------AR 211 (246)
T ss_dssp -T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCTT---------CS
T ss_pred -C----ChHHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEECCCcCCcccccCHHHHHHHHhcCCC---------CC
Confidence 1 267999999999988766431 1 1468999999999999997666555555555554432 34
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+.+.+|+|+++..++... .....|++|++.+|.
T Consensus 212 ~~~~~dva~~v~~l~s~~---------~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 212 FGQDTDIANTVAFLASDK---------AKYITGQTIHVNGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCcc---------ccCCCCCEEEeCCCc
Confidence 667899999999887521 224569999998875
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=201.35 Aligned_cols=226 Identities=17% Similarity=0.183 Sum_probs=160.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.++++++++ +
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGAT-VLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGH 81 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4577899999999999999999999999999 99999887632211 1123468899999999999988876 7
Q ss_pred cCEEEEcccCCCCc--------hhhhchhhhhHhhhHHHHHHHHHHHHc----------CCCeEEEEeccceeeCCcccc
Q 011770 79 VDCVFHVASYGMSG--------KEMLQFGRVDEVNINGTCHVIEACLEF----------GIQRLVYVSTYNVVFGGKEIV 140 (478)
Q Consensus 79 ~D~ViHlAa~~~~~--------~~~~~~~~~~~vNv~gt~nll~aa~~~----------~v~r~V~~SS~~v~~g~~~~~ 140 (478)
+|++||+||..... .+..+++..+++|+.|+.++++++.+. +..++|++||...+.+..
T Consensus 82 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~--- 158 (257)
T 3tpc_A 82 VHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQI--- 158 (257)
T ss_dssp CCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT---
T ss_pred CCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCC---
Confidence 89999999975322 223566788999999999999999874 345799999988753321
Q ss_pred CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeee
Q 011770 141 NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 141 ~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~ 220 (478)
+ ...|+.||...|.+.+....+ + ...|+++.+++|+.|.++......+.....+....
T Consensus 159 ---------~----~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~----- 216 (257)
T 3tpc_A 159 ---------G----QAAYAASKGGVAALTLPAARE-L---ARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAASV----- 216 (257)
T ss_dssp ---------T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBSCC--------------CCS-----
T ss_pred ---------C----CcchHHHHHHHHHHHHHHHHH-H---HHcCeEEEEEEeCCCCChhhccCCHHHHHHHHhcC-----
Confidence 1 267999999999988765431 1 13689999999999999865432222222222111
Q ss_pred CCCCcc-ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 221 GEPSVK-TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 221 g~g~~~-~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.. ..+.+.+|+|+++..++. .....|+++++.+|..++
T Consensus 217 ----p~~~r~~~~~dva~~v~~l~s-----------~~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 217 ----PFPPRLGRAEEYAALVKHICE-----------NTMLNGEVIRLDGALRMA 255 (257)
T ss_dssp ----SSSCSCBCHHHHHHHHHHHHH-----------CTTCCSCEEEESTTCCC-
T ss_pred ----CCCCCCCCHHHHHHHHHHHcc-----------cCCcCCcEEEECCCccCC
Confidence 11 357889999999998886 235689999999887654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=208.37 Aligned_cols=225 Identities=20% Similarity=0.165 Sum_probs=163.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
+.+++|+|+||||+|+||++++++|+++|++ |++++|+.+..... . ....++.++++|++|.++++++++
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3467789999999999999999999999998 99999843321110 0 113568899999999999988886
Q ss_pred ---CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+|+..... .+..+++..+++|+.|+.++++++.+. + +++|++||..+++.+.
T Consensus 96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~---------- 164 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMTGI---------- 164 (274)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCCSC----------
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccCCC----------
Confidence 789999999965332 233455778899999999999999876 5 6999999988742211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------------CcH-HHHHHHHHcC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------------RHL-PRIVSLAKLG 214 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------------~~~-~~~i~~~~~g 214 (478)
| ....|+.||...|.+++.+..+ + ...+++++++||+.++++... ... .........
T Consensus 165 --~---~~~~Y~~sK~a~~~~~~~~~~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (274)
T 1ja9_A 165 --P---NHALYAGSKAAVEGFCRAFAVD-C---GAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLAN- 234 (274)
T ss_dssp --C---SCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHH-
T ss_pred --C---CCchHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHh-
Confidence 1 1257999999999998776431 1 135899999999999887422 100 112122221
Q ss_pred CCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 215 LVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 215 ~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+....++++++|+|++++.++... .....|++|++++|.
T Consensus 235 --------~~~~~~~~~~~dva~~i~~l~~~~---------~~~~~G~~~~v~gG~ 273 (274)
T 1ja9_A 235 --------MNPLKRIGYPADIGRAVSALCQEE---------SEWINGQVIKLTGGG 273 (274)
T ss_dssp --------TSTTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTC
T ss_pred --------cCCCCCccCHHHHHHHHHHHhCcc---------cccccCcEEEecCCc
Confidence 223457899999999999888631 123468999998763
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=207.36 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=164.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecC-CCCccccc----ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR-TNSPWSHL----LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~-~~~~~~~~----~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++|+|+||||+|+||++++++|+++|++ |++++|+ ........ ....+++++.+|++|.++++++++
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAK-VGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 366789999999999999999999999998 9999998 43211100 113468899999999999998887
Q ss_pred --CcCEEEEcccC-CCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C--C---CeEEEEeccceeeCCccccC
Q 011770 78 --GVDCVFHVASY-GMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G--I---QRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 78 --~~D~ViHlAa~-~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~--v---~r~V~~SS~~v~~g~~~~~~ 141 (478)
++|+|||+|+. .... .+..+.+..+++|+.|+.++++++.+. + . .++|++||...+..+
T Consensus 83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----- 157 (258)
T 3afn_B 83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGG----- 157 (258)
T ss_dssp HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCC-----
T ss_pred cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCC-----
Confidence 79999999996 3221 123345678899999999999977542 2 2 689999998763211
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeC
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g 221 (478)
..+ ...|+.||...|.+++.+..+ + ...+++++++||+.++++......+.+...+..+.+
T Consensus 158 ------~~~----~~~Y~~sK~a~~~~~~~~~~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~----- 218 (258)
T 3afn_B 158 ------GPG----AGLYGAAKAFLHNVHKNWVDF-H---TKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIP----- 218 (258)
T ss_dssp ------CTT----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTCT-----
T ss_pred ------CCC----chHHHHHHHHHHHHHHHHHHh-h---cccCeEEEEEeCCCcccccccccCHHHHHHHhccCC-----
Confidence 011 267999999999998776431 1 135899999999999998755443444444444322
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCC-CCCCceEEecCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRP-IASGQPYFVSDGF 270 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~-~~~g~~yni~~g~ 270 (478)
..++++++|+|++++.++... .. ...|+.|++++|.
T Consensus 219 ----~~~~~~~~dva~~~~~l~~~~---------~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 219 ----MGRFGTAEEMAPAFLFFASHL---------ASGYITGQVLDINGGQ 255 (258)
T ss_dssp ----TCSCBCGGGTHHHHHHHHCHH---------HHTTCCSEEEEESTTS
T ss_pred ----CCcCCCHHHHHHHHHHHhCcc---------hhccccCCEEeECCCc
Confidence 246899999999999887621 11 2468899998875
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-24 Score=205.19 Aligned_cols=228 Identities=17% Similarity=0.165 Sum_probs=164.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++++++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g 85 (263)
T 3ak4_A 7 IFDLSGRKAIVTGGSKGIGAAIARALDKAGAT-VAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALG 85 (263)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 34567899999999999999999999999998 99999875421110 0112267889999999999988886
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+||..... .+..+++..+++|+.|+.++++++.+. + ..++|++||...+.+.
T Consensus 86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 153 (263)
T 3ak4_A 86 GFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA------------ 153 (263)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC------------
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC------------
Confidence 799999999965332 123456788999999999999988764 4 5799999998763221
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-----------HHHHHHHHcCCCC
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-----------PRIVSLAKLGLVP 217 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-----------~~~i~~~~~g~~~ 217 (478)
| ....|+.||...|.+++.+..+ + ...|++++++||+.|+++...... +.....+...
T Consensus 154 -~---~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (263)
T 3ak4_A 154 -P---LLAHYSASKFAVFGWTQALARE-M---APKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSL--- 222 (263)
T ss_dssp -T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHT---
T ss_pred -C---CchhHHHHHHHHHHHHHHHHHH-H---hHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhc---
Confidence 1 1267999999999988766431 1 135899999999999988532211 1111111111
Q ss_pred eeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 218 FKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 218 ~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.....+++.+|+|++++.++... .....|+.|++.+|..+
T Consensus 223 ------~p~~~~~~~~dvA~~v~~l~s~~---------~~~~tG~~~~vdgG~~~ 262 (263)
T 3ak4_A 223 ------TPLGRIEEPEDVADVVVFLASDA---------ARFMTGQGINVTGGVRM 262 (263)
T ss_dssp ------CTTCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESSSSSC
T ss_pred ------CCCCCCcCHHHHHHHHHHHhCcc---------ccCCCCCEEEECcCEeC
Confidence 12246889999999999887631 12357899999887543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=206.12 Aligned_cols=227 Identities=18% Similarity=0.150 Sum_probs=150.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHh------
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAA------ 76 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l------ 76 (478)
+++++|+|+||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.+++++++
T Consensus 10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (266)
T 1xq1_A 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 88 (266)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999998 99999865421110 011346889999999999988877
Q ss_pred --cCcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 77 --RGVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 77 --~~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
.++|+|||+|+..... .+..+.+..+++|+.|+.++++++ ++.+.+++|++||...+.+..
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------- 159 (266)
T 1xq1_A 89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSAS--------- 159 (266)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------------
T ss_pred hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCCC---------
Confidence 4689999999964322 134456778999999999999998 456778999999988743211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCCCc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g~~ 225 (478)
....|+.||...|.+++.+..+ + ...+++++++||+.++++...... +.+...+... ..
T Consensus 160 -------~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~ 219 (266)
T 1xq1_A 160 -------VGSIYSATKGALNQLARNLACE-W---ASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISR---------KP 219 (266)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEECCSCC------------------------------
T ss_pred -------CCchHHHHHHHHHHHHHHHHHH-H---hHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHhc---------CC
Confidence 1267999999999999776431 1 135899999999999999654321 1111111111 11
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
...+++++|+|++++.++... .....|+.+++.+|...
T Consensus 220 ~~~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gG~~~ 257 (266)
T 1xq1_A 220 LGRFGEPEEVSSLVAFLCMPA---------ASYITGQTICVDGGLTV 257 (266)
T ss_dssp ----CCGGGGHHHHHHHTSGG---------GTTCCSCEEECCCCEEE
T ss_pred CCCCcCHHHHHHHHHHHcCcc---------ccCccCcEEEEcCCccc
Confidence 235789999999999887521 12356899999988643
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=200.58 Aligned_cols=221 Identities=19% Similarity=0.211 Sum_probs=161.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+|+++||||+|+||++++++|+++|++ |++++|+.+..... .....++.++++|++|.++++++++ +
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDR-VAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999998 99999875421100 1113468899999999999988876 7
Q ss_pred cCEEEEcccCCCCch-------hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK-------EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~-------~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
+|+|||+|+...... +..+.+..+++|+.|+.++.+++. +.+.+++|++||...+.+..
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 150 (250)
T 2cfc_A 81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFP---------- 150 (250)
T ss_dssp CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCC----------
Confidence 899999999653322 234567788999999987777665 44778999999987743211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
+ ...|+.||...|.+++.+..+ + ...+++++++||+.++++..... .+.+...+..+.+
T Consensus 151 --~----~~~Y~~sK~a~~~~~~~l~~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--------- 211 (250)
T 2cfc_A 151 --G----RSAYTTSKGAVLQLTKSVAVD-Y---AGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIP--------- 211 (250)
T ss_dssp --T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCT---------
T ss_pred --C----chhHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCC---------
Confidence 1 267999999999998776431 1 13589999999999999975421 1223333333221
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+.+.+|+|++++.++.. ......|+.+++.+|.
T Consensus 212 ~~~~~~~~dva~~~~~l~~~---------~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 212 QKEIGTAAQVADAVMFLAGE---------DATYVNGAALVMDGAY 247 (250)
T ss_dssp TCSCBCHHHHHHHHHHHHST---------TCTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHcCc---------hhhcccCCEEEECCce
Confidence 23578999999999988762 1223568999998774
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=206.70 Aligned_cols=235 Identities=15% Similarity=0.181 Sum_probs=162.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c---ccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L---LINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~---~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
++++++|++|||||+|+||++++++|+++|++ |++++|+....... . .....+.++.+|++|.++++++++
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGAN-IVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 44677899999999999999999999999998 99999854321111 0 114568899999999999988776
Q ss_pred -----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCC
Q 011770 78 -----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+||...... +..+++..+++|+.|+.++++++ ++.+..++|++||...+.+..
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 171 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASP------- 171 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCC-------
Confidence 7899999999754332 34456788999999999999998 445667999999987643211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHH--HHcCC-CCeeeC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSL--AKLGL-VPFKIG 221 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~--~~~g~-~~~~~g 221 (478)
....|+.||...|.+++....+ + +..|+++.+++|+.|++|......+..... ..... ....+.
T Consensus 172 ---------~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (281)
T 3v2h_A 172 ---------FKSAYVAAKHGIMGLTKTVALE-V---AESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVML 238 (281)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCC---------------------------
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHH
Confidence 1267999999999998766432 1 136899999999999998654322211110 00000 011233
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
++.....+.+++|+|++++.++.. ......|+++++.+|.
T Consensus 239 ~~~p~~r~~~~edvA~~v~~L~s~---------~a~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 239 KGQPTKKFITVEQVASLALYLAGD---------DAAQITGTHVSMDGGW 278 (281)
T ss_dssp -CCTTCSCBCHHHHHHHHHHHHSS---------GGGGCCSCEEEESTTG
T ss_pred hcCCCCCccCHHHHHHHHHHHcCC---------CcCCCCCcEEEECCCc
Confidence 445667899999999999988752 1223679999998874
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=199.81 Aligned_cols=227 Identities=18% Similarity=0.153 Sum_probs=168.5
Q ss_pred CcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 4 SENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 4 ~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++..+++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.++++++++
T Consensus 4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 4 SMTAELENKVAIITGACGGIGLETSRVLARAGAR-VVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp ---CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999998 99999886642111 1124568899999999999988876
Q ss_pred --CcCEEEEcccCCCC------chhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 --GVDCVFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 --~~D~ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+|+.... ..+..+++..+++|+.|+.++++++ ++.+..++|++||...+.+..
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------- 154 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYD-------- 154 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCS--------
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCC--------
Confidence 78999999997522 1234456788999999999999999 556777999999988742211
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeCCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
....|+.||...|.+++....+ + ..+|+++.+++|+.|++|.... .............+
T Consensus 155 --------~~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~-------- 214 (271)
T 3tzq_B 155 --------MSTAYACTKAAIETLTRYVATQ-Y---GRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHL-------- 214 (271)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTST--------
T ss_pred --------CChHHHHHHHHHHHHHHHHHHH-H---hhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcCC--------
Confidence 1267999999999998776532 1 1368999999999999997652 22333333333322
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+...+|+|++++.++... .....|+++++.+|
T Consensus 215 -~~r~~~p~dvA~~v~~L~s~~---------~~~itG~~i~vdGG 249 (271)
T 3tzq_B 215 -AGRIGEPHEIAELVCFLASDR---------AAFITGQVIAADSG 249 (271)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTT
T ss_pred -CCCCcCHHHHHHHHHHHhCcc---------cCCcCCCEEEECCC
Confidence 134677999999999887631 22467999999888
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-24 Score=202.40 Aligned_cols=231 Identities=20% Similarity=0.207 Sum_probs=163.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+... ......... .++++|++|.++++++++ ++|
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD 79 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVD 79 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 467899999999999999999999999998 9999987653 111111113 789999999998888775 689
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+||...... +..+.+..+++|+.|+.++++++.+ .+.+++|++||...+.+.+
T Consensus 80 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~--------------- 144 (256)
T 2d1y_A 80 VLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQ--------------- 144 (256)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCT---------------
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCC---------------
Confidence 9999999754322 2345678899999999999998865 3567999999987643211
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHH-HHcCCCCeeeCCCCcccccee
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSL-AKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~-~~~g~~~~~~g~g~~~~~~v~ 231 (478)
....|+.||...|.+++.+..+ + ...++++++++|+.+.++.. ...+.. .........+.+......+++
T Consensus 145 -~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
T 2d1y_A 145 -ENAAYNASKGGLVNLTRSLALD-L---APLRIRVNAVAPGAIATEAV----LEAIALSPDPERTRRDWEDLHALRRLGK 215 (256)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHH----HHHHC--------CHHHHTTSTTSSCBC
T ss_pred -CChhHHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEeeCCccCchh----hhccccccCCHHHHHHHHhcCCCCCCcC
Confidence 1267999999999998766431 1 13689999999999987631 111000 001111111122233457899
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
++|+|++++.++... .....|+.|++.+|...+.
T Consensus 216 ~~dvA~~~~~l~s~~---------~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 216 PEEVAEAVLFLASEK---------ASFITGAILPVDGGMTASF 249 (256)
T ss_dssp HHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGBC
T ss_pred HHHHHHHHHHHhCch---------hcCCCCCEEEECCCccccc
Confidence 999999999887631 1235789999998876654
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=204.62 Aligned_cols=231 Identities=15% Similarity=0.068 Sum_probs=160.0
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEec-CCCCcccc--cc--c-CCCeEEEEecCCCH----H
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDL-RTNSPWSH--LL--I-NHGVHCIQGDVVSK----I 70 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r-~~~~~~~~--~~--~-~~~v~~v~gDl~d~----~ 70 (478)
|+...+..|++|+++||||+|+||++++++|+++|++ |++++| +....... .. . ..++.++++|++|. +
T Consensus 1 m~~~~~~~~~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 79 (276)
T 1mxh_A 1 MNETSHEASECPAAVITGGARRIGHSIAVRLHQQGFR-VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLD 79 (276)
T ss_dssp ----------CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHH
T ss_pred CcchhhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHH
Confidence 6666666678899999999999999999999999998 999998 43211000 00 0 35688999999999 8
Q ss_pred HHHHHhc-------CcCEEEEcccCCCCch----hh-----------hchhhhhHhhhHHHHHHHHHHHHc---CC----
Q 011770 71 DVEKAAR-------GVDCVFHVASYGMSGK----EM-----------LQFGRVDEVNINGTCHVIEACLEF---GI---- 121 (478)
Q Consensus 71 ~l~~~l~-------~~D~ViHlAa~~~~~~----~~-----------~~~~~~~~vNv~gt~nll~aa~~~---~v---- 121 (478)
+++++++ ++|+|||+||...... +. .+.+..+++|+.|+.++++++.+. +.
T Consensus 80 ~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~ 159 (276)
T 1mxh_A 80 CCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRS 159 (276)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------C
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCC
Confidence 8887775 7899999999643221 22 456678999999999999999884 33
Q ss_pred --CeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 122 --QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 122 --~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
.++|++||...+.+.. + ...|+.||...|.+++.+..+ + ...|+++++++|+.|++|
T Consensus 160 ~~g~iv~isS~~~~~~~~------------~----~~~Y~asK~a~~~l~~~la~e-~---~~~gi~v~~v~PG~v~t~- 218 (276)
T 1mxh_A 160 RNLSVVNLCDAMTDLPLP------------G----FCVYTMAKHALGGLTRAAALE-L---APRHIRVNAVAPGLSLLP- 218 (276)
T ss_dssp CCEEEEEECCGGGGSCCT------------T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESSBSCC-
T ss_pred CCcEEEEECchhhcCCCC------------C----CeehHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEecCcccCC-
Confidence 6999999988743211 1 257999999999998766431 1 135899999999999999
Q ss_pred CCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 200 EERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 200 ~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
. ...+..........+ ..+++.+.+|+|++++.++... .....|+.+++.+|..
T Consensus 219 ~-~~~~~~~~~~~~~~p--------~~r~~~~~~dva~~v~~l~s~~---------~~~~tG~~~~vdgG~~ 272 (276)
T 1mxh_A 219 P-AMPQETQEEYRRKVP--------LGQSEASAAQIADAIAFLVSKD---------AGYITGTTLKVDGGLI 272 (276)
T ss_dssp S-SSCHHHHHHHHTTCT--------TTSCCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred c-cCCHHHHHHHHhcCC--------CCCCCCCHHHHHHHHHHHhCcc---------ccCccCcEEEECCchh
Confidence 3 222333333333221 1133889999999999887621 1235689999988753
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-25 Score=203.71 Aligned_cols=190 Identities=12% Similarity=0.054 Sum_probs=145.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~ViHlAa~ 88 (478)
|+|+||||+|+||++++++|+++ + |++++|++............ +++.+|++|++++.++++ ++|+|||+|+.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~-V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 76 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--D-LLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGK 76 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--E-EEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--C-EEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 57999999999999999999988 6 99999865321111111112 888999999999999998 89999999996
Q ss_pred CCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHH
Q 011770 89 GMSG----KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 89 ~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~ 164 (478)
.... .+..+.+..+++|+.|+.++++++++.+.+++|++||..++.+. .+ .+.|+.||..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~~------------~~----~~~Y~~sK~a 140 (207)
T 2yut_A 77 AGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQV------------PG----FAAYAAAKGA 140 (207)
T ss_dssp CCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHSS------------TT----BHHHHHHHHH
T ss_pred CCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccCC------------CC----cchHHHHHHH
Confidence 5432 13445677899999999999999977777899999999874221 11 2679999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.|.+++.+..+ + ...|++++++||+.++|+... +++...+++++++|+|++++.+++
T Consensus 141 ~~~~~~~~~~~-~---~~~gi~v~~v~pg~v~t~~~~-------------------~~~~~~~~~~~~~dva~~~~~~~~ 197 (207)
T 2yut_A 141 LEAYLEAARKE-L---LREGVHLVLVRLPAVATGLWA-------------------PLGGPPKGALSPEEAARKVLEGLF 197 (207)
T ss_dssp HHHHHHHHHHH-H---HTTTCEEEEECCCCBCSGGGG-------------------GGTSCCTTCBCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-H---hhhCCEEEEEecCcccCCCcc-------------------ccCCCCCCCCCHHHHHHHHHHHHh
Confidence 99998776431 1 136899999999999998411 122344789999999999999987
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=202.85 Aligned_cols=244 Identities=19% Similarity=0.185 Sum_probs=172.4
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc---------c--c-----ccccCCCeEEEEe
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP---------W--S-----HLLINHGVHCIQG 64 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~---------~--~-----~~~~~~~v~~v~g 64 (478)
|..+.+.++++|++|||||+|+||++++++|+++|++ |++++|+.... . . ......++.++++
T Consensus 3 m~~~~~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (278)
T 3sx2_A 3 MPRSSEGPLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQA 81 (278)
T ss_dssp ------CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCCCCCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeC
Confidence 4445556688899999999999999999999999999 99999873210 0 0 0112356899999
Q ss_pred cCCCHHHHHHHhc-------CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccce
Q 011770 65 DVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNV 132 (478)
Q Consensus 65 Dl~d~~~l~~~l~-------~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v 132 (478)
|++|.++++++++ ++|++||+||.........+++..+++|+.|+.++++++.+. + ..++|++||...
T Consensus 82 D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~ 161 (278)
T 3sx2_A 82 DVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAG 161 (278)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGG
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHh
Confidence 9999999988876 789999999976555455677889999999999999998653 2 458999999887
Q ss_pred eeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-HHH-HH
Q 011770 133 VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-RIV-SL 210 (478)
Q Consensus 133 ~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-~~i-~~ 210 (478)
+.+... + ......|+.||...|.+++.+..+ + ...|+++.+++|+.|++|....... ... ..
T Consensus 162 ~~~~~~--------~----~~~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~ 225 (278)
T 3sx2_A 162 LAGVGS--------A----DPGSVGYVAAKHGVVGLMRVYANL-L---AGQMIRVNSIHPSGVETPMINNEFTREWLAKM 225 (278)
T ss_dssp TSCCCC--------S----SHHHHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESCBSSTTTSSHHHHHHHHHH
T ss_pred cCCCcc--------C----CCCchHhHHHHHHHHHHHHHHHHH-H---hccCcEEEEEecCCccCccchhhhHHHHHhhc
Confidence 433210 0 011357999999999998766432 1 1468999999999999997654221 222 12
Q ss_pred HHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 211 AKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 211 ~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..........++... ..+.+.+|+|++++.++... .....|+++++.+|..
T Consensus 226 ~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~---------~~~itG~~i~vdGG~~ 276 (278)
T 3sx2_A 226 AAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQ---------ARYITGVTLPVDAGFL 276 (278)
T ss_dssp HHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTTT
T ss_pred cchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCcc---------cccccCCEEeECCCcc
Confidence 222222222333333 68899999999999887521 2246799999988753
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-24 Score=204.42 Aligned_cols=235 Identities=17% Similarity=0.113 Sum_probs=170.1
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHh
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
|...+++++++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.+++++++
T Consensus 2 m~~~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 80 (256)
T 3gaf_A 2 MSYESPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVI 80 (256)
T ss_dssp ----CTTCCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCcCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 5555566788999999999999999999999999999 99999875421110 112356889999999999988877
Q ss_pred c-------CcCEEEEcccCCCCc---hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCC
Q 011770 77 R-------GVDCVFHVASYGMSG---KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~---~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
+ ++|++||+||..... .+..+++..+++|+.|+.++++++. +.+..++|++||...+.+..
T Consensus 81 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 155 (256)
T 3gaf_A 81 KAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNV----- 155 (256)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCT-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCC-----
Confidence 6 789999999975432 2345677889999999999999985 34566999999987642211
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-HHHHHHHHHcCCCCeeeC
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-LPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-~~~~i~~~~~g~~~~~~g 221 (478)
+ ...|+.||...|.+.+....+ + +..|+++.+++|+.|.++..... .+.....+....
T Consensus 156 -------~----~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~------ 214 (256)
T 3gaf_A 156 -------R----MASYGSSKAAVNHLTRNIAFD-V---GPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHT------ 214 (256)
T ss_dssp -------T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTC------
T ss_pred -------C----chHHHHHHHHHHHHHHHHHHH-H---hhhCcEEEEEEEccccCchhhhccCHHHHHHHHhcC------
Confidence 1 267999999999998766532 1 13689999999999988742211 122223333322
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
....+.+.+|+|++++.++... .....|+++++.+|...++
T Consensus 215 ---p~~r~~~~~dva~~~~~L~s~~---------~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 215 ---PLGRLGEAQDIANAALFLCSPA---------AAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTSCCC-
T ss_pred ---CCCCCCCHHHHHHHHHHHcCCc---------ccCccCCEEEECCCccccC
Confidence 2245788999999999887521 2246799999999877654
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-24 Score=205.50 Aligned_cols=238 Identities=19% Similarity=0.141 Sum_probs=168.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc-----------c-----ccccCCCeEEEEecCCCH
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW-----------S-----HLLINHGVHCIQGDVVSK 69 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~-----------~-----~~~~~~~v~~v~gDl~d~ 69 (478)
|+++++|+++||||+|+||++++++|+++|++ |++++|++.... . .......+.++++|++|.
T Consensus 5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 83 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDR 83 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 44578899999999999999999999999999 999998743210 0 011235688999999999
Q ss_pred HHHHHHhc-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceee
Q 011770 70 IDVEKAAR-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVF 134 (478)
Q Consensus 70 ~~l~~~l~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~ 134 (478)
++++++++ ++|++||+||..... .+..+++..+++|+.|+.++++++. +.+..++|++||...+.
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 163 (281)
T 3s55_A 84 AALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS 163 (281)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC
Confidence 99888876 789999999975422 2345667889999999999999974 34667999999987642
Q ss_pred CCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH--HHHHHHH
Q 011770 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP--RIVSLAK 212 (478)
Q Consensus 135 g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~--~~i~~~~ 212 (478)
+.. + ...|+.||...|.+.+.+..+ + ..+|+++.+++|+.|++|....... .+.....
T Consensus 164 ~~~------------~----~~~Y~asK~a~~~~~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~ 223 (281)
T 3s55_A 164 ANF------------A----QASYVSSKWGVIGLTKCAAHD-L---VGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLE 223 (281)
T ss_dssp CCT------------T----CHHHHHHHHHHHHHHHHHHHH-T---GGGTEEEEEEEECSBCSTTTSSHHHHHC------
T ss_pred CCC------------C----CchhHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEecCcccCccccchhhhcccccccc
Confidence 211 1 267999999999999876532 1 1368999999999999997643110 0000000
Q ss_pred cCCC----CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 213 LGLV----PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 213 ~g~~----~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.... ............+.+++|+|++++.++... .....|+++++.+|...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~---------~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 224 KPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEA---------SSHITGTVLPIDAGATAR 279 (281)
T ss_dssp -CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGG
T ss_pred ccchhHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCc---------ccCCCCCEEEECCCcccC
Confidence 0000 000011122367899999999999888631 223579999999887654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=201.55 Aligned_cols=229 Identities=21% Similarity=0.221 Sum_probs=169.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--c-cCCCeEEEEecCCCHHHHHHHhc---
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--L-INHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~-~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
|+++++|+++||||+|+||++++++|+++|++ |++++|+....... . . ...++.++++|++|.++++++++
T Consensus 5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGAN-VAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAV 83 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999998 99999875421110 0 0 11468999999999999988776
Q ss_pred ----CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ----GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+||..... .+..+++..+++|+.|+.++++++.+. +..++|++||......+
T Consensus 84 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--------- 154 (262)
T 3pk0_A 84 EEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITG--------- 154 (262)
T ss_dssp HHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBC---------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC---------
Confidence 789999999965332 234456778999999999999998775 67899999997642111
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCc
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
. | ....|+.||...|.+++.+..+ + ..+|+++.+++|+.|+++......+.....+....+.
T Consensus 155 --~-~---~~~~Y~asK~a~~~l~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~-------- 216 (262)
T 3pk0_A 155 --Y-P---GWSHYGATKAAQLGFMRTAAIE-L---APHKITVNAIMPGNIMTEGLLENGEEYIASMARSIPA-------- 216 (262)
T ss_dssp --C-T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCCHHHHTTCHHHHHHHHTTSTT--------
T ss_pred --C-C---CChhhHHHHHHHHHHHHHHHHH-H---HhhCcEEEEEEeCcCcCccccccCHHHHHHHHhcCCC--------
Confidence 0 1 1267999999999999876532 1 1368999999999999985433333344444443322
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
..+.+.+|+|+++..++... .....|+++++.+|..+
T Consensus 217 -~r~~~p~dva~~v~~L~s~~---------~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 217 -GALGTPEDIGHLAAFLATKE---------AGYITGQAIAVDGGQVL 253 (262)
T ss_dssp -SSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTTTC
T ss_pred -CCCcCHHHHHHHHHHHhCcc---------ccCCcCCEEEECCCeec
Confidence 24678899999998887531 22467999999988655
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=198.37 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=163.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++|+|+||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++ +
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGR 86 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 3467899999999999999999999999998 99999886532111 1113568999999999999988887 7
Q ss_pred cCEEEEcccCCCCc----------hhhhchhhhhHhhhHHHHHHHHHHHHc----------CCCeEEEEeccceeeCCcc
Q 011770 79 VDCVFHVASYGMSG----------KEMLQFGRVDEVNINGTCHVIEACLEF----------GIQRLVYVSTYNVVFGGKE 138 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----------~~~~~~~~~~~vNv~gt~nll~aa~~~----------~v~r~V~~SS~~v~~g~~~ 138 (478)
+|+|||+|+..... .+..+.+..+++|+.++.++++++.+. +..++|++||...+.+..
T Consensus 87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~- 165 (265)
T 2o23_A 87 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV- 165 (265)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT-
T ss_pred CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCCC-
Confidence 99999999975332 233456788899999999999999876 567899999988743211
Q ss_pred ccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCe
Q 011770 139 IVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPF 218 (478)
Q Consensus 139 ~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~ 218 (478)
+ ...|+.||...|.+++....+ + ...++++++++|+.+.++.................+.
T Consensus 166 -----------~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~- 225 (265)
T 2o23_A 166 -----------G----QAAYSASKGGIVGMTLPIARD-L---APIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPF- 225 (265)
T ss_dssp -----------T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCCC----------CHHHHTCSS-
T ss_pred -----------C----CchhHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEEeccccCccccccCHHHHHHHHHcCCC-
Confidence 1 267999999999888765431 1 1368999999999999885432111111111111110
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
...+++.+|+|++++.+++ .+...|+.+++.+|..+
T Consensus 226 -------~~~~~~~~dva~~~~~l~~-----------~~~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 226 -------PSRLGDPAEYAHLVQAIIE-----------NPFLNGEVIRLDGAIRM 261 (265)
T ss_dssp -------SCSCBCHHHHHHHHHHHHH-----------CTTCCSCEEEESTTCCC
T ss_pred -------cCCCCCHHHHHHHHHHHhh-----------cCccCceEEEECCCEec
Confidence 1347899999999998886 23567899999887654
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-24 Score=200.94 Aligned_cols=221 Identities=14% Similarity=0.133 Sum_probs=156.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEE-ecCCCCcccc--c--ccCCCeEE-EEecCCCHHHHHHHhc-------
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAF-DLRTNSPWSH--L--LINHGVHC-IQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l-~r~~~~~~~~--~--~~~~~v~~-v~gDl~d~~~l~~~l~------- 77 (478)
||+|+||||+|+||++++++|+++|++ |+++ +|+....... . ....++.. +.+|++|.++++++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFA-LAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999998 9998 6653321100 0 01235666 8999999999888764
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHH----HHHHcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIE----ACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~----aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++.+ .+++.+.+++|++||...+++..
T Consensus 80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 147 (245)
T 2ph3_A 80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNP------------ 147 (245)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCS------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCC------------
Confidence 799999999975432 1334567788999999555554 55556788999999987644321
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
+ ...|+.||...|.+++.+..+ + ...+++++++||+.++++......+.....+..+.+ ...+
T Consensus 148 ~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~ 210 (245)
T 2ph3_A 148 G----QANYVASKAGLIGFTRAVAKE-Y---AQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIP---------AGRF 210 (245)
T ss_dssp S----BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHTCT---------TCSC
T ss_pred C----CcchHHHHHHHHHHHHHHHHH-H---HHcCeEEEEEEEEeecCcchhhcCHHHHHHHHhcCC---------CCCC
Confidence 1 267999999999888766431 1 135899999999999988543322333333332221 2458
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
++++|+|++++.++... .....|+.|++.+|.
T Consensus 211 ~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 211 GRPEEVAEAVAFLVSEK---------AGYITGQTLCVDGGL 242 (245)
T ss_dssp BCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTC
T ss_pred cCHHHHHHHHHHHhCcc---------cccccCCEEEECCCC
Confidence 89999999999887521 123568999998774
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=201.43 Aligned_cols=229 Identities=13% Similarity=0.101 Sum_probs=165.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.++|+++||||+|+||++++++|+++|++ |+++++++...... .....++.++++|++|.++++++++
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 83 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYS-VTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHF 83 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999998 99998775432111 1113468999999999999988876
Q ss_pred -CcCEEEEcccCCC--C----chhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 -GVDCVFHVASYGM--S----GKEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 -~~D~ViHlAa~~~--~----~~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+||... . ..+..+.+..+++|+.|+.++++++ ++.+..++|++||..+. +..
T Consensus 84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~-~~~--------- 153 (264)
T 3i4f_A 84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGAD-SAP--------- 153 (264)
T ss_dssp SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGG-GCC---------
T ss_pred CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhc-ccC---------
Confidence 7899999999421 1 1233456788999999999999998 56677899999998542 110
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
+..+ ...|+.||...|.+++....+ + ...|+++++++|+.|+++......+......... ...
T Consensus 154 ~~~~----~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~p~ 216 (264)
T 3i4f_A 154 GWIY----RSAFAAAKVGLVSLTKTVAYE-E---AEYGITANMVCPGDIIGEMKEATIQEARQLKEHN---------TPI 216 (264)
T ss_dssp CCTT----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCCCGGGGSCCHHHHHHC----------------
T ss_pred CCCC----CchhHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEccCCccCccchhccHHHHHHHhhc---------CCC
Confidence 1111 267999999999998766431 1 1368999999999999997666555433322221 122
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
..+.+.+|+|++++.++... .....|+++++.+|-....
T Consensus 217 ~r~~~~~dva~~v~~l~s~~---------~~~itG~~i~vdGG~~~~~ 255 (264)
T 3i4f_A 217 GRSGTGEDIARTISFLCEDD---------SDMITGTIIEVTGAVDVIH 255 (264)
T ss_dssp -CCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESCSCCCCC
T ss_pred CCCcCHHHHHHHHHHHcCcc---------cCCCCCcEEEEcCceeecc
Confidence 35778999999999888631 2246799999998876554
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=198.30 Aligned_cols=228 Identities=17% Similarity=0.154 Sum_probs=163.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHh------
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAA------ 76 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l------ 76 (478)
+++++|+++||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|.+++++++
T Consensus 5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (260)
T 2ae2_A 5 WNLEGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 83 (260)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999998 99999875421110 0 11346888999999999988877
Q ss_pred --cCcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 77 --RGVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 77 --~~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
.++|+|||+||..... .+..+++..+++|+.|+.++++++. +.+.+++|++||...+.+.
T Consensus 84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 153 (260)
T 2ae2_A 84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV---------- 153 (260)
T ss_dssp TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC----------
T ss_pred cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC----------
Confidence 4699999999965332 2334567789999999999999985 4567899999998763211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHH---HHHcCCCCeeeC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVS---LAKLGLVPFKIG 221 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~---~~~~g~~~~~~g 221 (478)
| ....|+.||...|.+++.+..+ + ...++++++++|+.++++...... +.... .+...
T Consensus 154 ---~---~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------- 216 (260)
T 2ae2_A 154 ---P---YEAVYGATKGAMDQLTRCLAFE-W---AKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDR------- 216 (260)
T ss_dssp ---T---TCHHHHHHHHHHHHHHHHHHHH-T---GGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHT-------
T ss_pred ---C---CcchHHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhc-------
Confidence 1 1267999999999999876532 1 136899999999999887321100 11111 12111
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.....+.+.+|+|++++.++... .....|+.+++.+|...+
T Consensus 217 --~~~~~~~~~~dvA~~v~~l~s~~---------~~~~tG~~~~vdgG~~~~ 257 (260)
T 2ae2_A 217 --CALRRMGEPKELAAMVAFLCFPA---------ASYVTGQIIYVDGGLMAN 257 (260)
T ss_dssp --STTCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGC
T ss_pred --CCCCCCCCHHHHHHHHHHHcCcc---------ccCCCCCEEEECCCcccc
Confidence 12245889999999999887521 123578999998886543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=202.53 Aligned_cols=225 Identities=15% Similarity=0.100 Sum_probs=160.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+.+++|+|+||||+|+||++++++|+++|++ |++++|+....... . ....++.++.+|++|.++++++++
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 118 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSH-VICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE 118 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHh
Confidence 3466789999999999999999999999998 99987764321100 0 113468899999999999988774
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++. +.+.+++|++||...+++..
T Consensus 119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 188 (285)
T 2c07_A 119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNV---------- 188 (285)
T ss_dssp CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCC----------
Confidence 689999999975332 2334567889999999888888776 45678999999987654321
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
+ ...|+.||...|.+++.+..+ + ...+++++++||+.++++......+..........+ ..
T Consensus 189 --~----~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~ 249 (285)
T 2c07_A 189 --G----QANYSSSKAGVIGFTKSLAKE-L---ASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIP---------AG 249 (285)
T ss_dssp --T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCT---------TS
T ss_pred --C----CchHHHHHHHHHHHHHHHHHH-H---HHhCcEEEEEEeCcEecCchhhcCHHHHHHHHhhCC---------CC
Confidence 1 257999999999988766431 1 135899999999999998654333333333332221 13
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+++++|+|++++.++... .....|+.+++.+|.
T Consensus 250 ~~~~~~dvA~~~~~l~~~~---------~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 250 RMGTPEEVANLACFLSSDK---------SGYINGRVFVIDGGL 283 (285)
T ss_dssp SCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTS
T ss_pred CCCCHHHHHHHHHHHhCCC---------cCCCCCCEEEeCCCc
Confidence 4889999999999887621 123578899998775
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=204.33 Aligned_cols=228 Identities=21% Similarity=0.178 Sum_probs=168.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc---cCCCeEEEEecCCCHHHHHHHhc---
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL---INHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~---~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
++++++|++|||||+|+||++++++|+++|++ |++++|+....... .. ....+.++++|++|.++++++++
T Consensus 36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGRGIATVFARAGAN-VAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVV 114 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999998 99999876532111 01 11468899999999998887765
Q ss_pred ----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEecccee-eCCccccCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVV-FGGKEIVNGNE 144 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~-~g~~~~~~~~E 144 (478)
++|+|||+||...... +..+++..+++|+.|+.++++++. +.+..++|++||.... .+.
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~-------- 186 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGY-------- 186 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCC--------
Confidence 6799999999754322 345667889999999999999984 5667899999998652 111
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
| ....|+.||...|.+.+.+..+ + ...|+++.+++|+.|++|......+.....+....+.
T Consensus 187 -----~---~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~------- 247 (293)
T 3rih_A 187 -----P---GWSHYGASKAAQLGFMRTAAIE-L---APRGVTVNAILPGNILTEGLVDMGEEYISGMARSIPM------- 247 (293)
T ss_dssp -----T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCCHHHHHTCHHHHHHHHTTSTT-------
T ss_pred -----C---CCHHHHHHHHHHHHHHHHHHHH-H---hhhCeEEEEEecCCCcCcchhhccHHHHHHHHhcCCC-------
Confidence 0 1267999999999998766431 1 1368999999999999985433333444444444332
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
..+...+|++++++.++... .....|+++++.+|..+
T Consensus 248 --~r~~~p~dvA~~v~fL~s~~---------a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 248 --GMLGSPVDIGHLAAFLATDE---------AGYITGQAIVVDGGQVL 284 (293)
T ss_dssp --SSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTTTC
T ss_pred --CCCCCHHHHHHHHHHHhCcc---------ccCCCCCEEEECCCccC
Confidence 23456899999998887521 22467999999988765
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=201.13 Aligned_cols=227 Identities=14% Similarity=0.170 Sum_probs=162.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
+++++|+|+||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|.+++.++++
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3467889999999999999999999999998 99999833211100 0 113468889999999999888776
Q ss_pred ---CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+|+..... .+..+.+..+++|+.|+.++++++.+. + ..++|++||...+.+
T Consensus 82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~---------- 151 (261)
T 1gee_A 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIP---------- 151 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCC----------
Confidence 789999999965432 133456778899999999998887654 4 579999999875321
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g 223 (478)
..+ ...|+.||...|.+++.+..+ + ...+++++++||+.|+++...... +.....+....
T Consensus 152 --~~~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------- 213 (261)
T 1gee_A 152 --WPL----FVHYAASKGGMKLMTETLALE-Y---APKGIRVNNIGPGAINTPINAEKFADPEQRADVESMI-------- 213 (261)
T ss_dssp --CTT----CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTC--------
T ss_pred --CCC----ccHHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcC--------
Confidence 111 267999999999888765421 1 135899999999999998543211 22222222211
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
....+++.+|+|++++.++... .....|+.+++.+|...
T Consensus 214 -~~~~~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gg~~~ 252 (261)
T 1gee_A 214 -PMGYIGEPEEIAAVAAWLASSE---------ASYVTGITLFADGGMTL 252 (261)
T ss_dssp -TTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGG
T ss_pred -CCCCCcCHHHHHHHHHHHhCcc---------ccCCCCcEEEEcCCccc
Confidence 1235889999999999887521 12356889999887643
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=199.23 Aligned_cols=230 Identities=16% Similarity=0.187 Sum_probs=162.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc--cCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL--INHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~--~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+......... ...++.++.+|++|.++++++++ ++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGAN-IVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV 80 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999999999999999999998 9999987651111111 13458889999999999998887 79
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+||...... +..+++..+++|+.|+.++.+++ ++.+.+++|++||...+.+..
T Consensus 81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 146 (255)
T 2q2v_A 81 DILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGST-------------- 146 (255)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT--------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCC--------------
Confidence 99999999754321 23456788999999877766665 566778999999987743211
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCC----eee-CCCCcc
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVP----FKI-GEPSVK 226 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~----~~~-g~g~~~ 226 (478)
....|+.||...|.+.+....+ + ...|++++++||+.|++|......... ... +... ..+ ......
T Consensus 147 --~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~p~ 217 (255)
T 2q2v_A 147 --GKAAYVAAKHGVVGLTKVVGLE-T---ATSNVTCNAICPGWVLTPLVQKQIDDR-AAN--GGDPLQAQHDLLAEKQPS 217 (255)
T ss_dssp --TBHHHHHHHHHHHHHHHHHHHH-T---TTSSEEEEEEEESSBCCHHHHHHHHHH-HHH--TCCHHHHHHHHHTTTCTT
T ss_pred --CchhHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEeeCCCcCcchhhhcccc-ccc--ccchHHHHHHHHhccCCC
Confidence 1267999999999998766532 1 246899999999999998532211000 000 0000 001 222334
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+++++|+|++++.++... .....|+.|++.+|..
T Consensus 218 ~~~~~~~dvA~~~~~l~s~~---------~~~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 218 LAFVTPEHLGELVLFLCSEA---------GSQVRGAAWNVDGGWL 253 (255)
T ss_dssp CCCBCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCCc---------cCCCCCCEEEECCCcc
Confidence 56899999999999887521 1235689999988753
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=195.61 Aligned_cols=227 Identities=16% Similarity=0.122 Sum_probs=153.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+... ...++.++.+|++|.++++++++ ++|
T Consensus 4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id 76 (250)
T 2fwm_X 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAK-VTGFDQAFTQ------EQYPFATEVMDVADAAQVAQVCQRLLAETERLD 76 (250)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCCCS------SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCchhh------hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 466789999999999999999999999998 9999987642 11238889999999999988876 789
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+|+...... +..+++..+++|+.|+.++++++ ++.+..++|++||...+.+. .+
T Consensus 77 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------~~-- 142 (250)
T 2fwm_X 77 ALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPR------------IG-- 142 (250)
T ss_dssp EEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------------TT--
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC------------CC--
Confidence 9999999753321 34467788999999999999998 45567899999998763211 11
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-H-HHHH-HHHcCCCCeeeCCCCccccc
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-P-RIVS-LAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~-~~i~-~~~~g~~~~~~g~g~~~~~~ 229 (478)
...|+.||...|.+.+....+ + ...|++++++||+.++++...... + .... .+.... ...........+
T Consensus 143 --~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~ 214 (250)
T 2fwm_X 143 --MSAYGASKAALKSLALSVGLE-L---AGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFG--EQFKLGIPLGKI 214 (250)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCC-------------------------------------
T ss_pred --CchHHHHHHHHHHHHHHHHHH-h---CccCCEEEEEECCcccCccccccccChhHHHHHHhhhh--hcccccCCCCCC
Confidence 267999999999998776431 1 136899999999999998643211 0 0000 010000 000001112347
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+.+|+|++++.++... .....|+.+++.+|..+
T Consensus 215 ~~p~dvA~~v~~l~s~~---------~~~~tG~~i~vdGG~~~ 248 (250)
T 2fwm_X 215 ARPQEIANTILFLASDL---------ASHITLQDIVVDGGSTL 248 (250)
T ss_dssp -CHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTTTT
T ss_pred cCHHHHHHHHHHHhCcc---------ccCCCCCEEEECCCccc
Confidence 89999999999887631 12457899999887543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=197.71 Aligned_cols=228 Identities=16% Similarity=0.135 Sum_probs=168.4
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.++++++|+++||||+|+||++++++|+++|++ |++++|+....... ........++++|++|.++++++++
T Consensus 3 ~~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (248)
T 3op4_A 3 QFMNLEGKVALVTGASRGIGKAIAELLAERGAK-VIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEF 81 (248)
T ss_dssp CTTCCTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHc
Confidence 345678899999999999999999999999999 99999875422111 1123457889999999999988876
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+||...... +..+++..+++|+.|+.++.+++.+ .+..++|++||...+.+..
T Consensus 82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------- 150 (248)
T 3op4_A 82 GGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNA----------- 150 (248)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCC-----------
Confidence 7899999999754322 3456678899999999999999865 4567999999987743321
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
+ ...|+.||...+.+.+....+ + ...|+++.+++|+.|..+......+.......... ....
T Consensus 151 -~----~~~Y~asK~a~~~l~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---------p~~r 212 (248)
T 3op4_A 151 -G----QANYAAAKAGVIGFTKSMARE-V---ASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQV---------PAGR 212 (248)
T ss_dssp -T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTC---------TTCS
T ss_pred -C----ChHHHHHHHHHHHHHHHHHHH-H---HHhCeEEEEEeeCCCCCchhhhcCHHHHHHHHhcC---------CCCC
Confidence 1 267999999999888765432 1 14689999999999998865443333333333322 2245
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+.+.+|+|+++..++... .....|+++++.+|..
T Consensus 213 ~~~p~dva~~v~~L~s~~---------~~~itG~~i~vdgG~~ 246 (248)
T 3op4_A 213 LGDPREIASAVAFLASPE---------AAYITGETLHVNGGMY 246 (248)
T ss_dssp CBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTSS
T ss_pred CcCHHHHHHHHHHHcCCc---------cCCccCcEEEECCCee
Confidence 788999999998887521 2245799999988753
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=199.91 Aligned_cols=222 Identities=15% Similarity=0.140 Sum_probs=160.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEE-ecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAF-DLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l-~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+|+|+||||+|+||++++++|+++|++ |+++ +|+....... .....++.++++|++|.++++++++ +
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999998 9885 5543211000 0113468889999999999988876 6
Q ss_pred cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+||..... .+..+++..+++|+.|+.++++++.+. +.+++|++||...+++.. +
T Consensus 80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------~ 147 (244)
T 1edo_A 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI------------G 147 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT------------T
T ss_pred CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCC------------C
Confidence 89999999975432 233456778899999999999998763 678999999987644321 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...|+.||...|.+++.+..+ + ...+++++++||+.++++......+.......... ....++
T Consensus 148 ----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 210 (244)
T 1edo_A 148 ----QANYAAAKAGVIGFSKTAARE-G---ASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTI---------PLGRTG 210 (244)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH-H---HTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSC---------TTCSCB
T ss_pred ----CccchhhHHHHHHHHHHHHHH-h---hhcCCEEEEEeeCccccchhhhcChHHHHHHhhcC---------CCCCCC
Confidence 257999999999888765431 1 13689999999999998854332233333333221 123588
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+.+|+|++++.++.... .....|+.|++.+|.
T Consensus 211 ~~~dva~~~~~l~~~~~--------~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 211 QPENVAGLVEFLALSPA--------ASYITGQAFTIDGGI 242 (244)
T ss_dssp CHHHHHHHHHHHHHCSG--------GGGCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhCCCc--------cCCcCCCEEEeCCCc
Confidence 99999999998874210 123568999998874
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=205.93 Aligned_cols=228 Identities=16% Similarity=0.070 Sum_probs=164.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
..+++|+++||||+|+||++++++|+++|++ |++++|+....... . ....++.++.+|++|.++++++++
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGAH-VVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999998 99999875421110 0 113468889999999999888776
Q ss_pred --CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 --GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 --~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+||.... ..+..+++..+++|+.|+.++++++. +.+.+++|++||...+.+.
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 158 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPF---------- 158 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCC----------
Confidence 79999999996431 12334567889999999999998875 4567899999998874221
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~ 224 (478)
.+ ...|+.||...|.+++....+ + ...++++++++|+.+.++...... .........+ .
T Consensus 159 --~~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~ 219 (260)
T 2zat_A 159 --PN----LGPYNVSKTALLGLTKNLAVE-L---APRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKES---------L 219 (260)
T ss_dssp --TT----BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHH---------H
T ss_pred --CC----chhHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEECcccCccchhcccChHHHHHHHhc---------C
Confidence 11 267999999999998776431 1 136899999999999988532110 1111111111 1
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
....+.+.+|+|+++..++... .....|+++++.+|.+.+
T Consensus 220 ~~~~~~~~~dva~~v~~l~s~~---------~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 220 RIRRLGNPEDCAGIVSFLCSED---------ASYITGETVVVGGGTASR 259 (260)
T ss_dssp TCSSCBCGGGGHHHHHHHTSGG---------GTTCCSCEEEESTTCCCC
T ss_pred CCCCCCCHHHHHHHHHHHcCcc---------cCCccCCEEEECCCcccc
Confidence 2245889999999998887521 123578999999988765
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=198.04 Aligned_cols=224 Identities=17% Similarity=0.123 Sum_probs=157.4
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
.++++++|++|||||+|+||++++++|+++|++ |++++|+..... ......++.++.+|++|.++++++++
T Consensus 21 ~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (260)
T 3gem_A 21 GHMTLSSAPILITGASQRVGLHCALRLLEHGHR-VIISYRTEHASV-TELRQAGAVALYGDFSCETGIMAFIDLLKTQTS 98 (260)
T ss_dssp ------CCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESSCCHHH-HHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCS
T ss_pred cCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHH-HHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 345577899999999999999999999999999 999999865321 11222358899999999999888775
Q ss_pred CcCEEEEcccCCCCch---hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK---EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~---~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
++|+|||+||...... +..+.+..+++|+.|+.++.+++... +..++|++||...+.+.. +
T Consensus 99 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~------------~ 166 (260)
T 3gem_A 99 SLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSS------------K 166 (260)
T ss_dssp CCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCS------------S
T ss_pred CCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC------------C
Confidence 6899999999653322 23455678999999999999988653 557999999987743211 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...|+.||...|.+++.+..+. ..++++.+++|+.|.++.... ...........+ ...+.
T Consensus 167 ----~~~Y~asKaa~~~l~~~la~e~-----~~~Irvn~v~PG~v~t~~~~~--~~~~~~~~~~~p---------~~r~~ 226 (260)
T 3gem_A 167 ----HIAYCATKAGLESLTLSFAARF-----APLVKVNGIAPALLMFQPKDD--AAYRANALAKSA---------LGIEP 226 (260)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH-----TTTCEEEEEEECTTCC-----------------CC---------SCCCC
T ss_pred ----cHhHHHHHHHHHHHHHHHHHHH-----CCCCEEEEEeecccccCCCCC--HHHHHHHHhcCC---------CCCCC
Confidence 2679999999999987765321 235999999999998875321 111122222221 12345
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
..+|+|++++.+++ .....|++++|.+|..++
T Consensus 227 ~~edva~~v~~L~~-----------~~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 227 GAEVIYQSLRYLLD-----------STYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp CTHHHHHHHHHHHH-----------CSSCCSCEEEESTTTTTC
T ss_pred CHHHHHHHHHHHhh-----------CCCCCCCEEEECCCcccC
Confidence 68999999998885 335789999999887664
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=196.05 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=167.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.++++++++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGAT-VVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999998 99999875421110 1123568999999999999888775
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++.+ .+..++|++||...+.+.+
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 149 (247)
T 3lyl_A 82 AIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNP------------ 149 (247)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT------------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCC------------
Confidence 479999999975432 23445678899999999999998765 3556999999987643211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
....|+.||...|.+++....+ + ...++++.+++|+.|.++......+........+. ....+
T Consensus 150 ----~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~~~~~ 212 (247)
T 3lyl_A 150 ----GQTNYCAAKAGVIGFSKSLAYE-V---ASRNITVNVVAPGFIATDMTDKLTDEQKSFIATKI---------PSGQI 212 (247)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTTS---------TTCCC
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHH-H---HHcCeEEEEEeeCcEecccchhccHHHHHHHhhcC---------CCCCC
Confidence 1267999999988888765431 1 13689999999999999876554444433333322 23468
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+++|+|+++..++... .....|+.+++.+|..+
T Consensus 213 ~~~~dva~~i~~l~s~~---------~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 213 GEPKDIAAAVAFLASEE---------AKYITGQTLHVNGGMYM 246 (247)
T ss_dssp BCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTSSC
T ss_pred cCHHHHHHHHHHHhCCC---------cCCccCCEEEECCCEec
Confidence 89999999999887531 22457999999888654
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=198.09 Aligned_cols=221 Identities=16% Similarity=0.186 Sum_probs=160.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.++++++++ ++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 82 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL 82 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 467889999999999999999999999998 99999875421110 0112347889999999999998887 79
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+||..... .+..+.+..+++|+.|+.++.+++ ++.+.+++|++||...+.+.+ +
T Consensus 83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------~- 149 (260)
T 1nff_A 83 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTV------------A- 149 (260)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------------T-
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCC------------C-
Confidence 9999999975432 233456788999999997666654 456778999999988743211 1
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||...|.+++....+ + ...|++++++||+.|+++... . ..... . ......+.+
T Consensus 150 ---~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~-~---------~~~~~--~--~~~~~~~~~ 208 (260)
T 1nff_A 150 ---CHGYTATKFAVRGLTKSTALE-L---GPSGIRVNSIHPGLVKTPMTD-W---------VPEDI--F--QTALGRAAE 208 (260)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCSGGGT-T---------SCTTC--S--CCSSSSCBC
T ss_pred ---chhHHHHHHHHHHHHHHHHHH-h---CccCcEEEEEEeCCCCCCccc-c---------chhhH--H--hCccCCCCC
Confidence 257999999999998765431 1 136899999999999998532 1 00000 0 112346789
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+|+|++++.++... .....|+.|++.+|...
T Consensus 209 ~~dvA~~v~~l~s~~---------~~~~~G~~~~v~gG~~~ 240 (260)
T 1nff_A 209 PVEVSNLVVYLASDE---------SSYSTGAEFVVDGGTVA 240 (260)
T ss_dssp HHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHHhCcc---------ccCCcCCEEEECCCeec
Confidence 999999999887631 12356899999988543
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=199.04 Aligned_cols=226 Identities=13% Similarity=0.089 Sum_probs=163.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc----ccCCCeEEEEecCCCHHHHHHHhcC-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL----LINHGVHCIQGDVVSKIDVEKAARG----- 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~----~~~~~v~~v~gDl~d~~~l~~~l~~----- 78 (478)
++++|+|+||||+|+||++++++|+++|++ |++++|+........ ....++.++++|++|.+++++++++
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 109 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGAD-VAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDF 109 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCE-EEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999998 999998765321110 1134688999999999998887763
Q ss_pred --cCEEEEcccCCCC------chhhhchhhhhHhhhHH----HHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 79 --VDCVFHVASYGMS------GKEMLQFGRVDEVNING----TCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 79 --~D~ViHlAa~~~~------~~~~~~~~~~~~vNv~g----t~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
+|+|||+||.... ..+..+.+..+++|+.| ++++++.+++.+.+++|++||...+.+.
T Consensus 110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 179 (279)
T 3ctm_A 110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN---------- 179 (279)
T ss_dssp SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC-----------
T ss_pred CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC----------
Confidence 8999999996543 22334567788999999 5677788887888899999998763221
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
+.. ....|+.||...|.+++.+..+ + ...+ ++++++|+.+.++......+.......... ..
T Consensus 180 ~~~----~~~~Y~~sK~a~~~~~~~la~e-~---~~~~-~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------p~ 241 (279)
T 3ctm_A 180 IPQ----LQAPYNTAKAACTHLAKSLAIE-W---APFA-RVNTISPGYIDTDITDFASKDMKAKWWQLT---------PL 241 (279)
T ss_dssp --C----CHHHHHHHHHHHHHHHHHHHHH-T---TTTC-EEEEEEECSBSSTTTSSCCHHHHHHHHHHS---------TT
T ss_pred CCC----CcccHHHHHHHHHHHHHHHHHH-h---cccC-CEEEEeccCCccccccccChHHHHHHHHhC---------Cc
Confidence 011 1267999999999999876532 1 1356 999999999998854322222222222111 11
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+++.+|+|++++.++... .....|+.+++.+|..
T Consensus 242 ~~~~~~~dvA~~~~~l~s~~---------~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 242 GREGLTQELVGGYLYLASNA---------STFTTGSDVVIDGGYT 277 (279)
T ss_dssp CSCBCGGGTHHHHHHHHSGG---------GTTCCSCEEEESTTCC
T ss_pred cCCcCHHHHHHHHHHHhCcc---------ccCccCCEEEECCCee
Confidence 35789999999999887631 1245789999988754
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=196.35 Aligned_cols=224 Identities=17% Similarity=0.241 Sum_probs=161.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh---cCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA---RGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l---~~~D~ViH 84 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+........ ...++.++++|++|.++++++. .++|+|||
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~ 80 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAK-VIATDINESKLQELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDVLFN 80 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCEEEE
Confidence 467899999999999999999999999998 999998754221111 2236889999999999988765 47899999
Q ss_pred cccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 85 VASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 85 lAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
+|+...... +..+++..+++|+.|+.++++++.+ .+..++|++||...+.+.. ....
T Consensus 81 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------~~~~ 145 (246)
T 2ag5_A 81 VAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGV---------------VNRC 145 (246)
T ss_dssp CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCC---------------TTBH
T ss_pred CCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCC---------------CCCc
Confidence 999754321 2345677889999999999998864 4677999999987632211 0126
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH------HHHHHHHHcCCCCeeeCCCCccccce
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL------PRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~------~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
.|+.||...|.+++....+ + ...|++++++||+.|++|...... ......+.... ....+.
T Consensus 146 ~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 212 (246)
T 2ag5_A 146 VYSTTKAAVIGLTKSVAAD-F---IQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ---------KTGRFA 212 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC---------TTSSCE
T ss_pred cHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcC---------CCCCCC
Confidence 7999999999998776431 1 135899999999999998432111 11222222211 112478
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+.+|+|++++.++... .....|+.+++.+|.
T Consensus 213 ~~~dvA~~v~~l~s~~---------~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 213 TAEEIAMLCVYLASDE---------SAYVTGNPVIIDGGW 243 (246)
T ss_dssp EHHHHHHHHHHHHSGG---------GTTCCSCEEEECTTG
T ss_pred CHHHHHHHHHHHhCcc---------ccCCCCCEEEECCCc
Confidence 9999999999887521 224578999998774
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=197.17 Aligned_cols=225 Identities=20% Similarity=0.178 Sum_probs=138.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++++|++|||||+|+||++++++|+++|++ |++++|+....... ......+.++.+|++|.++++++++
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999 99999875421110 1123568899999999999988876
Q ss_pred --CcCEEEEcccCCCC-------chhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCC
Q 011770 78 --GVDCVFHVASYGMS-------GKEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 --~~D~ViHlAa~~~~-------~~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+||.... ..+..+.+..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 153 (253)
T 3qiv_A 84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL---------- 153 (253)
T ss_dssp HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC----------
Confidence 78999999997321 1233456788999999966666655 445667999999988741
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-HHHHHHHcCCCCeeeCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-RIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-~~i~~~~~g~~~~~~g~g 223 (478)
+ ...|+.||...|.+++.+..+. ...++++.+++|+.|+++......+ .....+.++.
T Consensus 154 -----~----~~~Y~asK~a~~~~~~~la~e~----~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~-------- 212 (253)
T 3qiv_A 154 -----Y----SNYYGLAKVGINGLTQQLSREL----GGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGL-------- 212 (253)
T ss_dssp ---------------CCHHHHHHHHHHHHHHT----TTTTEEEEEEEC--------------------------------
T ss_pred -----C----CchhHHHHHHHHHHHHHHHHHH----hhcCeEEEEEEecCCcccchhhcCcHHHHHHHhccC--------
Confidence 1 1569999999999987765421 2468999999999999986543221 2222222222
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
....+.+++|+|++++.++... .....|+.|++.+|..++
T Consensus 213 -~~~~~~~~~dva~~~~~l~s~~---------~~~~tG~~~~vdgG~~~~ 252 (253)
T 3qiv_A 213 -PLSRMGTPDDLVGMCLFLLSDE---------ASWITGQIFNVDGGQIIR 252 (253)
T ss_dssp --------CCHHHHHHHHHHSGG---------GTTCCSCEEEC-------
T ss_pred -CCCCCCCHHHHHHHHHHHcCcc---------ccCCCCCEEEECCCeecC
Confidence 2234566889999999887631 224579999999887653
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=200.71 Aligned_cols=230 Identities=16% Similarity=0.108 Sum_probs=165.5
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCc--cccc-ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSP--WSHL-LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~~-~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++|+++||||+ |+||++++++|+++|++ |++++|+.... .... ....++.++++|++|.++++++++
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCE-EEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4667899999999 99999999999999998 99999875310 0000 111347889999999999888776
Q ss_pred --CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCC
Q 011770 78 --GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 --~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+||.... ..+..+++..+++|+.|+.++++++.+.- -.++|++||...+.+.
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--------- 154 (261)
T 2wyu_A 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV--------- 154 (261)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC---------
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCC---------
Confidence 68999999997532 12344567889999999999999998752 2489999997763221
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g 223 (478)
| ....|+.||...|.+++.+..+ + ...|+++++++|+.|+++.... ..+.....+....+.
T Consensus 155 ----~---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~------ 217 (261)
T 2wyu_A 155 ----P---KYNVMAIAKAALEASVRYLAYE-L---GPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPL------ 217 (261)
T ss_dssp ----T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTT------
T ss_pred ----C---CchHHHHHHHHHHHHHHHHHHH-H---hhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCC------
Confidence 1 1257999999999998776431 1 1358999999999999986432 123333333332221
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHH
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE 276 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e 276 (478)
..+.+++|+|++++.++... .....|+.|++.+|..++..|
T Consensus 218 ---~~~~~~~dva~~v~~l~s~~---------~~~~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 218 ---RRNITQEEVGNLGLFLLSPL---------ASGITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp ---SSCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGBC--
T ss_pred ---CCCCCHHHHHHHHHHHcChh---------hcCCCCCEEEECCCccccCCC
Confidence 24668999999999887521 123568999999887665544
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=198.22 Aligned_cols=233 Identities=16% Similarity=0.119 Sum_probs=159.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--ccc----CCCeEEEEecCCCHHHHHHHhc----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLI----NHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~----~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... ... ..++.++++|++|+++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGAR-LLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 367789999999999999999999999998 99999865321110 000 2268899999999999998886
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+++..+++|+.|+.++.+++. +.+.+++|++||...+.+.
T Consensus 83 ~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 151 (260)
T 2z1n_A 83 LGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPW----------- 151 (260)
T ss_dssp TTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred hcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCC-----------
Confidence 699999999965332 1334567889999999977776664 5577899999998874221
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHH--HHHcCCCCeeeCCCCc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVS--LAKLGLVPFKIGEPSV 225 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~--~~~~g~~~~~~g~g~~ 225 (478)
| ....|+.||...|.+.+....+ + ...|++++++||+.|+++........... ..........+.....
T Consensus 152 --~---~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (260)
T 2z1n_A 152 --Q---DLALSNIMRLPVIGVVRTLALE-L---APHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIP 222 (260)
T ss_dssp --T---TBHHHHHHTHHHHHHHHHHHHH-H---GGGTEEEEEEEECHHHHCCCC-----------------------CCT
T ss_pred --C---CCchhHHHHHHHHHHHHHHHHH-H---hhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcCC
Confidence 1 1267999999999988766431 1 13689999999999999865421100000 0000000000111112
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+.+.+|+|++++.++... .....|+.+++.+|.
T Consensus 223 ~~r~~~~~dva~~v~~l~s~~---------~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 223 MGRVGKPEELASVVAFLASEK---------ASFITGAVIPVDGGA 258 (260)
T ss_dssp TSSCCCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTT
T ss_pred CCCccCHHHHHHHHHHHhCcc---------ccCCCCCEEEeCCCc
Confidence 235789999999999887521 224578999998774
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=201.13 Aligned_cols=224 Identities=17% Similarity=0.100 Sum_probs=161.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--cc--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HL--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+...... .. ....++.++.+|++|.++++++++
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 97 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 467789999999999999999999999998 9999987542110 00 113468899999999999888776
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc------CCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF------GIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~------~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+||...... +..+++..+++|+.|+.++++++.+. +..++|++||...+++..
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~--------- 168 (277)
T 2rhc_B 98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVV--------- 168 (277)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCT---------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCC---------
Confidence 6899999999654321 23456778899999999999998765 567999999987643211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-----------HHHHHHHHcCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-----------PRIVSLAKLGL 215 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-----------~~~i~~~~~g~ 215 (478)
+ ...|+.||...|.+.+.+..+ + ...|+++++++|+.++++...... +.....+..+
T Consensus 169 ---~----~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (277)
T 2rhc_B 169 ---H----AAPYSASKHGVVGFTKALGLE-L---ARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITAR- 236 (277)
T ss_dssp ---T----CHHHHHHHHHHHHHHHHHHHH-H---TTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH-
T ss_pred ---C----CccHHHHHHHHHHHHHHHHHH-H---HHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhc-
Confidence 1 267999999999988765421 1 146899999999999987422111 0111111111
Q ss_pred CCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 216 VPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 216 ~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.....+++.+|+|++++.++... .....|+.+++.+|.
T Consensus 237 --------~p~~r~~~~~dvA~~v~~l~s~~---------~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 237 --------VPIGRYVQPSEVAEMVAYLIGPG---------AAAVTAQALNVCGGL 274 (277)
T ss_dssp --------STTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTC
T ss_pred --------CCCCCCcCHHHHHHHHHHHhCch---------hcCCCCcEEEECCCc
Confidence 12246889999999999887621 123578999998774
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=198.19 Aligned_cols=227 Identities=15% Similarity=0.101 Sum_probs=164.3
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCcccc-c--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-L--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++|+++||||+ |+||++++++|+++|++ |++++|+....... . .......++++|++|.++++++++
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHH
Confidence 3677899999999 99999999999999998 99999876211000 0 111235789999999999988776
Q ss_pred --CcCEEEEcccCCCC----c-----hhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCC
Q 011770 78 --GVDCVFHVASYGMS----G-----KEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 --~~D~ViHlAa~~~~----~-----~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+||.... . .+..+++..+++|+.|+.++++++.+.- -.++|++||...+.+.+
T Consensus 85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------- 157 (265)
T 1qsg_A 85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP------- 157 (265)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT-------
T ss_pred cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCC-------
Confidence 68999999997542 1 2334567889999999999999998762 24899999987642211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~ 222 (478)
+ ...|+.||...|.+++.+..+ + ...|+++++++|+.|++|.... ..+.....+..+.+.
T Consensus 158 -----~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~----- 219 (265)
T 1qsg_A 158 -----N----YNVMGLAKASLEANVRYMANA-M---GPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPI----- 219 (265)
T ss_dssp -----T----TTHHHHHHHHHHHHHHHHHHH-H---TTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-----
T ss_pred -----C----chHHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCC-----
Confidence 1 257999999999998766431 1 1468999999999999986432 223333333332221
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
..+.+.+|+|++++.++... .....|+.|++.+|...+
T Consensus 220 ----~~~~~~~dva~~v~~l~s~~---------~~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 220 ----RRTVTIEDVGNSAAFLCSDL---------SAGISGEVVHVDGGFSIA 257 (265)
T ss_dssp ----SSCCCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTGGGB
T ss_pred ----CCCCCHHHHHHHHHHHhCch---------hcCccCCEEEECCCcCCC
Confidence 24678999999999887521 123568999999886544
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-23 Score=196.88 Aligned_cols=222 Identities=18% Similarity=0.138 Sum_probs=161.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
|+++++|+++||||+|+||++++++|+++|++ |++++|+..... ....+.+|++|.+++.++++ +
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~-------~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 94 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGAR-VAVADRAVAGIA-------ADLHLPGDLREAAYADGLPGAVAAGLGR 94 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECSSCCTTSC-------CSEECCCCTTSHHHHHHHHHHHHHHHSC
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-------hhhccCcCCCCHHHHHHHHHHHHHhcCC
Confidence 45677899999999999999999999999998 999998755221 12345799999988877664 7
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+||...... +..+.+..+++|+.|+.++++++ ++.+..++|++||...+.+.. +
T Consensus 95 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~------------~ 162 (266)
T 3uxy_A 95 LDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGP------------G 162 (266)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCT------------T
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCC------------C
Confidence 899999999754322 34456778899999999999998 455677999999987642211 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-------HHHHHHHHHcCCCCeeeCCC
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-------LPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-------~~~~i~~~~~g~~~~~~g~g 223 (478)
...|+.||...|.+++.+..+ + ...|+++.+++|+.|+++..... .......+.. .
T Consensus 163 ----~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~---------~ 225 (266)
T 3uxy_A 163 ----HALYCLTKAALASLTQCMGMD-H---APQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGR---------T 225 (266)
T ss_dssp ----BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHT---------T
T ss_pred ----ChHHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHh---------c
Confidence 267999999999998766432 1 13689999999999998742111 1111122222 2
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.....+.+.+|+|++++.++... .....|+.+++.+|..++
T Consensus 226 ~p~~r~~~pedvA~~v~~L~s~~---------~~~itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 226 VPLGRIAEPEDIADVVLFLASDA---------ARYLCGSLVEVNGGKAVA 266 (266)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTCCCC
T ss_pred CCCCCCcCHHHHHHHHHHHhCch---------hcCCcCCEEEECcCEeCC
Confidence 23356789999999999887631 224679999999887653
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=195.28 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=160.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc---CcCE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR---GVDC 81 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~ 81 (478)
+...++++||||||+|+||++++++|+++|++ |++++|+....... ......+.++.+|++|.+++.++++ ++|+
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 87 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSK-VIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDI 87 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 34567899999999999999999999999998 99999865421111 1123578899999999999998887 6899
Q ss_pred EEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|||+||..... .+..+.+..+++|+.|+.++++++.+ .+..++|++||...+.+.. +
T Consensus 88 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------~--- 152 (249)
T 3f9i_A 88 LVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNP------------G--- 152 (249)
T ss_dssp EEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCS------------C---
T ss_pred EEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCC------------C---
Confidence 99999965422 23446678899999999999988754 4566999999988753221 1
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
...|+.||...|.+++.+..+ + ...++++.+++|+.|.++......+........+. ....+.+++
T Consensus 153 -~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 218 (249)
T 3f9i_A 153 -QANYCASKAGLIGMTKSLSYE-V---ATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQKI---------PLGTYGIPE 218 (249)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBC------CCHHHHHHHHHHC---------TTCSCBCHH
T ss_pred -CchhHHHHHHHHHHHHHHHHH-H---HHcCcEEEEEecCccccCcccccCHHHHHHHHhcC---------CCCCCcCHH
Confidence 267999999999988766431 1 13689999999999999865544343333333322 234688899
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
|+|++++.++... .....|+.+++.+|..
T Consensus 219 dva~~~~~l~s~~---------~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 219 DVAYAVAFLASNN---------ASYITGQTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHSGG---------GTTCCSCEEEESTTSS
T ss_pred HHHHHHHHHcCCc---------cCCccCcEEEECCCEe
Confidence 9999999888631 2245799999988754
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=196.09 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=160.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
++++|++|||||+|+||++++++|+++|++ |++++|+... ..++.++++|++|.++++++++ ++|
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD 76 (264)
T 2dtx_A 5 DLRDKVVIVTGASMGIGRAIAERFVDEGSK-VIDLSIHDPG-------EAKYDHIECDVTNPDQVKASIDHIFKEYGSIS 76 (264)
T ss_dssp GGTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESSCCC-------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEecCccc-------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 366789999999999999999999999998 9999987652 3468899999999999888776 689
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+||...... +..+++..+++|+.|+.++++++.+. +..++|++||...+.+. .+
T Consensus 77 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~-- 142 (264)
T 2dtx_A 77 VLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIIT------------KN-- 142 (264)
T ss_dssp EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCC------------TT--
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCC------------CC--
Confidence 9999999754322 34467788999999999999988763 56799999998764221 11
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-------H----HHHHHHHcCCCCeeeC
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-------P----RIVSLAKLGLVPFKIG 221 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-------~----~~i~~~~~g~~~~~~g 221 (478)
...|+.||...|.+++.+..+ + ... +++++++|+.+.++...... + .........
T Consensus 143 --~~~Y~~sK~a~~~~~~~la~e-~---~~~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 208 (264)
T 2dtx_A 143 --ASAYVTSKHAVIGLTKSIALD-Y---APL-LRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHE------- 208 (264)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHH-H---TTT-SEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHH-------
T ss_pred --chhHHHHHHHHHHHHHHHHHH-h---cCC-cEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhc-------
Confidence 267999999999998776431 1 124 99999999999876321110 0 111111111
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.....+++++|+|++++.++... .....|+.+++.+|..
T Consensus 209 --~p~~~~~~p~dvA~~v~~l~s~~---------~~~~tG~~i~vdGG~~ 247 (264)
T 2dtx_A 209 --HPMQRIGKPQEVASAVAFLASRE---------ASFITGTCLYVDGGLS 247 (264)
T ss_dssp --STTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred --CCCCCCcCHHHHHHHHHHHhCch---------hcCCCCcEEEECCCcc
Confidence 12245889999999999887621 1245789999988753
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-23 Score=197.05 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=160.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++++|+|+||||+|+||++++++|+++|++ |++++|+....... .....+++++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 467889999999999999999999999998 99999875421110 0111578999999999999888776
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCC-CeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGI-QRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v-~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+|+..... .+..+.+..+++|+.|+.++.+++. +.+. +++|++||...+.+.+
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------- 150 (251)
T 1zk4_A 82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDP----------- 150 (251)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCC-----------
Confidence 489999999965322 2334567789999998887766654 4566 7999999988743211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
+ ...|+.||...|.+++.+..+ +.. ...+++++++||+.++++........... .. .........
T Consensus 151 -~----~~~Y~~sK~a~~~~~~~~a~e-~~~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~--~~------~~~~~~~~~ 215 (251)
T 1zk4_A 151 -S----LGAYNASKGAVRIMSKSAALD-CAL-KDYDVRVNTVHPGYIKTPLVDDLPGAEEA--MS------QRTKTPMGH 215 (251)
T ss_dssp -T----CHHHHHHHHHHHHHHHHHHHH-HHH-TTCSEEEEEEEECCBCCHHHHTSTTHHHH--HT------STTTCTTSS
T ss_pred -C----CccchHHHHHHHHHHHHHHHH-hcc-cCCCeEEEEEeeCcCcchhhhhcCchhhh--HH------HhhcCCCCC
Confidence 1 267999999999988765421 000 03689999999999999853221111110 10 011112345
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+++.+|+|++++.++... .....|+.+++.+|..
T Consensus 216 ~~~~~dva~~~~~l~~~~---------~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 216 IGEPNDIAYICVYLASNE---------SKFATGSEFVVDGGYT 249 (251)
T ss_dssp CBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHcCcc---------cccccCcEEEECCCcc
Confidence 899999999999888621 1235689999988754
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=200.97 Aligned_cols=226 Identities=16% Similarity=0.178 Sum_probs=166.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++|++|||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGAN-IAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998 99999876421111 1123468899999999999888776
Q ss_pred --CcCEEEEcccCCCCch-----hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK-----EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~-----~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+||...... +..+++..+++|+.|+.++++++.+.- ..++|++||...+.+...
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 192 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNET---------- 192 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCTT----------
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCCC----------
Confidence 6899999999653221 345678899999999999999998763 348999999987533211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-HHHHHHHHHcCCCCeeeCCCCccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-LPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
...|+.||...|.+++....+ + ...|+++.+++|+.|++|..... -...... ++......
T Consensus 193 ------~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~---------~~~~~p~~ 253 (291)
T 3ijr_A 193 ------LIDYSATKGAIVAFTRSLSQS-L---VQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQ---------FGSNVPMQ 253 (291)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCSTHHHHHSCHHHHHH---------TTTTSTTS
T ss_pred ------ChhHHHHHHHHHHHHHHHHHH-H---hhcCEEEEEEeeCCCcCCcccccCCHHHHHH---------HHccCCCC
Confidence 267999999999998776432 1 13589999999999998842110 0111111 12223345
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+.+.+|+|++++.++... .....|+.+++.+|..+
T Consensus 254 r~~~p~dvA~~v~~L~s~~---------~~~itG~~i~vdGG~~~ 289 (291)
T 3ijr_A 254 RPGQPYELAPAYVYLASSD---------SSYVTGQMIHVNGGVIV 289 (291)
T ss_dssp SCBCGGGTHHHHHHHHSGG---------GTTCCSCEEEESSSCCC
T ss_pred CCcCHHHHHHHHHHHhCCc---------cCCCcCCEEEECCCccc
Confidence 6788999999999887631 22467999999887654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-23 Score=199.16 Aligned_cols=230 Identities=16% Similarity=0.162 Sum_probs=154.5
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
+|.++++|+++||||+|+||++++++|+++|++ |+++++++...... .....++.++++|++|.++++++++
T Consensus 23 mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 101 (280)
T 4da9_A 23 MMTQKARPVAIVTGGRRGIGLGIARALAASGFD-IAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAV 101 (280)
T ss_dssp CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHH
T ss_pred hhhccCCCEEEEecCCCHHHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 344567789999999999999999999999998 99999754422111 1123568999999999998888776
Q ss_pred -----CcCEEEEcccCCC--Cc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C---CCeEEEEeccceeeCCccc
Q 011770 78 -----GVDCVFHVASYGM--SG----KEMLQFGRVDEVNINGTCHVIEACLEF----G---IQRLVYVSTYNVVFGGKEI 139 (478)
Q Consensus 78 -----~~D~ViHlAa~~~--~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~---v~r~V~~SS~~v~~g~~~~ 139 (478)
++|+|||+||... .. .+..+++..+++|+.|+.++++++.+. + ..++|++||...+.+...
T Consensus 102 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~- 180 (280)
T 4da9_A 102 VAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPE- 180 (280)
T ss_dssp HHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------C-
T ss_pred HHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCC-
Confidence 7899999999731 11 134566788899999999999988764 2 458999999877433211
Q ss_pred cCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCee
Q 011770 140 VNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFK 219 (478)
Q Consensus 140 ~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~ 219 (478)
...|+.||...|.+.+....+ + ...|+++.+++|+.|.++......+........+
T Consensus 181 ---------------~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~----- 236 (280)
T 4da9_A 181 ---------------RLDYCMSKAGLAAFSQGLALR-L---AETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESG----- 236 (280)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHH-H---TTTTEEEEEEEECCBCC----------------------
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHH-H---HHhCcEEEEEeecCCcCCchhhcchhHHHHHhhc-----
Confidence 257999999999988766432 1 1478999999999999886443222211111111
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
......+.+.+|+|++++.++.. ......|+++++.+|..+
T Consensus 237 ---~~p~~r~~~pedvA~~v~~L~s~---------~~~~itG~~i~vdGG~~~ 277 (280)
T 4da9_A 237 ---LVPMRRWGEPEDIGNIVAGLAGG---------QFGFATGSVIQADGGLSI 277 (280)
T ss_dssp --------CCBCHHHHHHHHHHHHTS---------TTGGGTTCEEEESTTCC-
T ss_pred ---CCCcCCcCCHHHHHHHHHHHhCc---------cccCCCCCEEEECCCccc
Confidence 12234577899999999988762 122467999999888654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-23 Score=197.54 Aligned_cols=226 Identities=14% Similarity=0.179 Sum_probs=161.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
|+++++|+++||||+|+||++++++|+++|++ |++.+|+....... .....++.++++|++|.++++++++
T Consensus 22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAI-VGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREME 100 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 44577899999999999999999999999998 99998865421111 1123568999999999999988776
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+||..... .+..+++..+++|+.|+.++.+++. +.+..++|++||...+.+..
T Consensus 101 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~------------ 168 (266)
T 3grp_A 101 GIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNP------------ 168 (266)
T ss_dssp SCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCC------------
Confidence 789999999975422 2345677889999999777766654 45667999999987753321
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
....|+.||...+.+.+....+ + ...|+++.+++|+.|.++......+.....+..+.+ ...+
T Consensus 169 ----~~~~Y~asKaa~~~~~~~la~e-~---~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r~ 231 (266)
T 3grp_A 169 ----GQTNYCAAKAGLIGFSKALAQE-I---ASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIP---------MKRM 231 (266)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTTCT---------TCSC
T ss_pred ----CchhHHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEeeCcCCCchhhccCHHHHHHHHhcCC---------CCCC
Confidence 1267999999999888765432 1 136899999999999887433322333333443332 2456
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+.+|+|++++.++... .....|+++++.+|.
T Consensus 232 ~~~edvA~~v~~L~s~~---------~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 232 GIGEEIAFATVYLASDE---------AAYLTGQTLHINGGM 263 (266)
T ss_dssp BCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTC
T ss_pred cCHHHHHHHHHHHhCcc---------ccCccCCEEEECCCe
Confidence 78999999999887521 224679999998874
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=200.36 Aligned_cols=238 Identities=18% Similarity=0.059 Sum_probs=164.4
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc---CcC
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR---GVD 80 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~---~~D 80 (478)
.+.++++|+++||||+|+||++++++|+++|++ |++++|+....... .....+++++++|++|.++++++++ ++|
T Consensus 10 ~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD 88 (291)
T 3rd5_A 10 DLPSFAQRTVVITGANSGLGAVTARELARRGAT-VIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGAD 88 (291)
T ss_dssp GCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEE
T ss_pred hccCCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCC
Confidence 345678899999999999999999999999998 99999875422111 1123568999999999999999887 579
Q ss_pred EEEEcccCCCCc--hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCC-CCCCCCCCccCCc
Q 011770 81 CVFHVASYGMSG--KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNE-SLPYFPIDEHVDS 157 (478)
Q Consensus 81 ~ViHlAa~~~~~--~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E-~~p~~p~~~~~~~ 157 (478)
+|||+||..... .+..+.+..+++|+.|+.++++++.+...+|+|++||...+.+.......++ ..++.+ ...
T Consensus 89 ~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~----~~~ 164 (291)
T 3rd5_A 89 VLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSP----WLA 164 (291)
T ss_dssp EEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCH----HHH
T ss_pred EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCC----cch
Confidence 999999975432 2345667889999999999999999988889999999987544332222222 222222 367
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
|+.||...|.+++.+..+ +.. ...++++++++|+.|..+............+.. . ...+-....+|+|+
T Consensus 165 Y~~sK~a~~~~~~~la~e-~~~-~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~A~ 233 (291)
T 3rd5_A 165 YSQSKLANLLFTSELQRR-LTA-AGSPLRALAAHPGYSHTNLQGASGRKLGDALMS-A--------ATRVVATDADFGAR 233 (291)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHH-TTCCCEEEEECCSGGGSCC-----------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-Hhh-CCCCEEEEEeeCCCCccccccccchHHHHHHHH-H--------HHHHHhCCHHHHHH
Confidence 999999999988766432 110 012399999999999887544322111111111 0 01122335899999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
+++.++.. +...|+.+++.+|
T Consensus 234 ~~~~l~~~-----------~~~~G~~~~vdgG 254 (291)
T 3rd5_A 234 QTLYAASQ-----------DLPGDSFVGPRFG 254 (291)
T ss_dssp HHHHHHHS-----------CCCTTCEEEETTS
T ss_pred HHHHHHcC-----------CCCCCceeCCccc
Confidence 99998872 2467888888655
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=196.84 Aligned_cols=232 Identities=14% Similarity=0.151 Sum_probs=158.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC-ccccc--c-c--CCCeEEEEecCCCHHHHHHHhc-----
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS-PWSHL--L-I--NHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~-~~~~~--~-~--~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+... ..... . . ..++.++.+|++|.++++++++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999 9999987542 11000 0 0 3468889999999999888776
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+++..+++|+.|+.++++++.+ .+..++|++||...+.+..
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 150 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA---------- 150 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCC----------
Confidence 689999999965432 13345678899999999999998864 4667999999988743211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHH--HcCCCCeee-CCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLA--KLGLVPFKI-GEPS 224 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~--~~g~~~~~~-g~g~ 224 (478)
+ ...|+.||...|.+++.+..+ + ...|+++++++|+.|.+|......+...... ........+ ....
T Consensus 151 --~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T 1x1t_A 151 --N----KSAYVAAKHGVVGFTKVTALE-T---AGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQ 220 (260)
T ss_dssp --T----CHHHHHHHHHHHHHHHHHHHH-H---TTTTEEEEEEEECCBCC------------------------CHHHHC
T ss_pred --C----CchHHHHHHHHHHHHHHHHHH-h---ccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccC
Confidence 1 267999999999988765421 1 1468999999999999986433221110000 000000000 0111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+.+.+|+|++++.++... .....|+.+++.+|.
T Consensus 221 p~~~~~~p~dva~~~~~l~s~~---------~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 221 PSLQFVTPEQLGGTAVFLASDA---------AAQITGTTVSVDGGW 257 (260)
T ss_dssp TTCCCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhChh---------hcCCCCCEEEECCCc
Confidence 2246889999999999887521 124578999998774
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=201.30 Aligned_cols=234 Identities=18% Similarity=0.198 Sum_probs=168.6
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHh
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
|....++++++|++|||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.+++++++
T Consensus 16 m~~~~~~~l~gk~~lVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~ 94 (271)
T 4ibo_A 16 MSNQIIFDLGGRTALVTGSSRGLGRAMAEGLAVAGAR-ILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAF 94 (271)
T ss_dssp --CCGGGCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHH
T ss_pred CccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 3333445678899999999999999999999999998 99998865421110 112356889999999999998887
Q ss_pred c-------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccC
Q 011770 77 R-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~ 141 (478)
+ ++|+|||+||...... +..+++..+++|+.|+.++.+++.+. +..++|++||...+.+..
T Consensus 95 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~---- 170 (271)
T 4ibo_A 95 ARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARA---- 170 (271)
T ss_dssp HHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT----
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCC----
Confidence 6 6899999999754322 34566788999999999998887654 556999999987632211
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCee
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFK 219 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~ 219 (478)
+ ...|+.||...|.+++.+..+ + +..|+++.+++|+.|.++...... +.....+....+
T Consensus 171 --------~----~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p--- 231 (271)
T 4ibo_A 171 --------T----VAPYTVAKGGIKMLTRAMAAE-W---AQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTP--- 231 (271)
T ss_dssp --------T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHST---
T ss_pred --------C----chhHHHHHHHHHHHHHHHHHH-H---hhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCC---
Confidence 1 267999999999998776432 1 146899999999999988543211 122233333222
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
...+.+.+|+|++++.++... .....|+++++.+|...+
T Consensus 232 ------~~r~~~pedva~~v~~L~s~~---------~~~itG~~i~vdGG~~~~ 270 (271)
T 4ibo_A 232 ------AKRWGKPQELVGTAVFLSASA---------SDYVNGQIIYVDGGMLSV 270 (271)
T ss_dssp ------TCSCBCGGGGHHHHHHHHSGG---------GTTCCSCEEEESTTGGGB
T ss_pred ------CCCCcCHHHHHHHHHHHhCcc---------ccCCCCcEEEECCCeecc
Confidence 234667899999998877531 224679999999886543
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=191.97 Aligned_cols=226 Identities=16% Similarity=0.134 Sum_probs=156.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--ccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--LINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
++++|+++||||+|+||++++++|+++|++ |++++|++....... ....++.++++|++|.++++++++ +
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 82 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999998 999998762111111 123468899999999999888754 7
Q ss_pred cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHH----HHHcCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEA----CLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~a----a~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+||..... .+..+++..+++|+.|+.++.++ +++.+..++|++||...+.+. |
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------~ 149 (249)
T 2ew8_A 83 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI-------------E 149 (249)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC-------------S
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC-------------C
Confidence 89999999975432 13345677899999998888887 445667899999998874321 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-CcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-RHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
....|+.||...|.+.+....+ + ...|+++++++|+.|.++... ...... ...... .. .....+
T Consensus 150 ---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~-~~~~~~-~~------~~~~~~ 214 (249)
T 2ew8_A 150 ---AYTHYISTKAANIGFTRALASD-L---GKDGITVNAIAPSLVRTATTEASALSAM-FDVLPN-ML------QAIPRL 214 (249)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCC-------------------C-TT------SSSCSC
T ss_pred ---CchhHHHHHHHHHHHHHHHHHH-H---HhcCcEEEEEecCcCcCccchhccccch-hhHHHH-hh------CccCCC
Confidence 1267999999999998776431 1 136899999999999988543 111000 000000 00 112357
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.+.+|+|++++.++... .....|+.+++.+|..
T Consensus 215 ~~p~dva~~~~~l~s~~---------~~~~tG~~~~vdGG~~ 247 (249)
T 2ew8_A 215 QVPLDLTGAAAFLASDD---------ASFITGQTLAVDGGMV 247 (249)
T ss_dssp CCTHHHHHHHHHHTSGG---------GTTCCSCEEEESSSCC
T ss_pred CCHHHHHHHHHHHcCcc---------cCCCCCcEEEECCCcc
Confidence 89999999999887521 1245789999987743
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-23 Score=197.41 Aligned_cols=227 Identities=17% Similarity=0.185 Sum_probs=164.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-c--cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-H--LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-~--~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++++|+++||||+|+||++++++|+++|++ |++++|....... . ......+.++++|++|.++++++.+
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g 105 (273)
T 3uf0_A 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAH-VLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATR 105 (273)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence 4577899999999999999999999999998 9999965321100 0 1123468899999999998877654
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+||...... +..+++..+++|+.|+.++++++. +.+..++|++||...+.+..
T Consensus 106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~------------ 173 (273)
T 3uf0_A 106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGR------------ 173 (273)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS------------
T ss_pred CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCC------------
Confidence 7899999999754322 344567889999999999999884 45667999999988742211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
....|+.||...|.+++.+..+ + +..|+++.+++|+.|++|..... .+.....+....+ ..
T Consensus 174 ----~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p---------~~ 236 (273)
T 3uf0_A 174 ----NVAAYAASKHAVVGLTRALASE-W---AGRGVGVNALAPGYVVTANTAALRADDERAAEITARIP---------AG 236 (273)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHST---------TS
T ss_pred ----CChhHHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCC---------CC
Confidence 1267999999999998776532 1 13689999999999999854321 1122222222221 23
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+.+.+|+|++++.++... .....|+++++.+|...
T Consensus 237 r~~~pedva~~v~~L~s~~---------a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 237 RWATPEDMVGPAVFLASDA---------ASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp SCBCGGGGHHHHHHHHSGG---------GTTCCSCEEEESTTGGG
T ss_pred CCCCHHHHHHHHHHHhCch---------hcCCcCCEEEECcCccC
Confidence 5678999999999887631 23467999999988654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-23 Score=198.12 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=166.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
+..+++|++|||||+|+||++++++|+++|++ |++++|+....... ......+.++.+|++|.++++++++
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAM-VIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLK 101 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 34577899999999999999999999999998 99999875421110 1123467889999999999888776
Q ss_pred ---CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+||..... .+..+++..+++|+.|+.++++++.+ .+-.++|++||...+.+..
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 172 (270)
T 3ftp_A 102 EFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNP--------- 172 (270)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCC---------
Confidence 789999999975433 23456678899999999999998864 3456899999987743321
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
+ ...|+.||...+.+.+....+ + ...|+++.+++|+.|.++................. ..
T Consensus 173 ---~----~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---------p~ 232 (270)
T 3ftp_A 173 ---G----QVNYAAAKAGVAGMTRALARE-I---GSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQI---------PL 232 (270)
T ss_dssp ---T----BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTTC---------TT
T ss_pred ---C----chhHHHHHHHHHHHHHHHHHH-H---hhhCeEEEEEEeCCCcCcchhhcCHHHHHHHHhcC---------CC
Confidence 1 267999999999888765431 1 13689999999999988743222222222233222 23
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
..+.+.+|+|++++.++... .....|+++++.+|..++
T Consensus 233 ~r~~~pedvA~~v~~L~s~~---------~~~itG~~i~vdGG~~~s 270 (270)
T 3ftp_A 233 GRLGSPEDIAHAVAFLASPQ---------AGYITGTTLHVNGGMFMS 270 (270)
T ss_dssp CSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTSSCC
T ss_pred CCCCCHHHHHHHHHHHhCCC---------cCCccCcEEEECCCcccC
Confidence 45788999999998887521 224679999999886543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=193.04 Aligned_cols=233 Identities=16% Similarity=0.117 Sum_probs=163.8
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc----------c--c-----ccccCCCeEEEEecCC
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP----------W--S-----HLLINHGVHCIQGDVV 67 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~----------~--~-----~~~~~~~v~~v~gDl~ 67 (478)
.|.++++|+++||||+|+||++++++|+++|++ |++++|+.+.. . . .......+.++++|++
T Consensus 9 ~~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 87 (280)
T 3pgx_A 9 QAGSLQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVR 87 (280)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred cccccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 455678899999999999999999999999999 99999853210 0 0 0112346889999999
Q ss_pred CHHHHHHHhc-------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccc
Q 011770 68 SKIDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYN 131 (478)
Q Consensus 68 d~~~l~~~l~-------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~ 131 (478)
|.++++++++ ++|++||+||...... +..+.+..+++|+.|+.++++++... + ..++|++||..
T Consensus 88 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~ 167 (280)
T 3pgx_A 88 DDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSA 167 (280)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchh
Confidence 9999988776 7899999999754332 34456778899999999999998542 3 46899999987
Q ss_pred eeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHH
Q 011770 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLA 211 (478)
Q Consensus 132 v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~ 211 (478)
.+.+.. ....|+.||...+.+.+....+ + ..+|+++.+++|+.|++|..... ......
T Consensus 168 ~~~~~~----------------~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~ 225 (280)
T 3pgx_A 168 GLKATP----------------GNGHYSASKHGLTALTNTLAIE-L---GEYGIRVNSIHPYSVETPMIEPE--AMMEIF 225 (280)
T ss_dssp GTSCCT----------------TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSTTCCHH--HHHHHH
T ss_pred hccCCC----------------CchhHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCcccCcccchh--hhhhhh
Confidence 742211 1267999999999988766531 1 13689999999999999975431 111111
Q ss_pred HcCCC---CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 212 KLGLV---PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 212 ~~g~~---~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..... .......... .+.+++|+|++++.++... .....|+++++.+|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~-r~~~p~dvA~~v~~L~s~~---------~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 226 ARHPSFVHSFPPMPVQPN-GFMTADEVADVVAWLAGDG---------SGTLTGTQIPVDKGA 277 (280)
T ss_dssp HHCGGGGGGSCCBTTBCS-SCBCHHHHHHHHHHHHSGG---------GTTCSSCEEEESTTG
T ss_pred hcCchhhhhhhhcccCCC-CCCCHHHHHHHHHHHhCcc---------ccCCCCCEEEECCCc
Confidence 11100 0001111122 4899999999999887521 223679999998774
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=191.49 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=142.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCcccccc-cCCCeEEEEecCCCHHHHHHHhc---------
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWSHLL-INHGVHCIQGDVVSKIDVEKAAR--------- 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~~~~-~~~~v~~v~gDl~d~~~l~~~l~--------- 77 (478)
++|+|+||||+|+||++++++|+++| ++ |++++|+......... ...++.++.+|++|.++++++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~-V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 80 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRH-IIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD 80 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCE-EEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcE-EEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999 88 9999987543211111 14578999999999999988887
Q ss_pred CcCEEEEcccCCC-C----chhhhchhhhhHhhhHHHHHHHHHHHHc----------C-----CCeEEEEeccceeeCCc
Q 011770 78 GVDCVFHVASYGM-S----GKEMLQFGRVDEVNINGTCHVIEACLEF----------G-----IQRLVYVSTYNVVFGGK 137 (478)
Q Consensus 78 ~~D~ViHlAa~~~-~----~~~~~~~~~~~~vNv~gt~nll~aa~~~----------~-----v~r~V~~SS~~v~~g~~ 137 (478)
++|+|||+||... . ..+..+.+..+++|+.|+.++++++.+. + ..++|++||...+.+..
T Consensus 81 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~ 160 (250)
T 1yo6_A 81 GLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDN 160 (250)
T ss_dssp CCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTC
T ss_pred CCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCCc
Confidence 8999999999754 1 1233456778899999999999988754 4 67999999988754322
Q ss_pred cccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCC
Q 011770 138 EIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVP 217 (478)
Q Consensus 138 ~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~ 217 (478)
. +..+.. +...|+.||...|.+++.+..+ + ...+++++++||+.|.++....
T Consensus 161 ~-----~~~~~~----~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~--------------- 212 (250)
T 1yo6_A 161 T-----SGSAQF----PVLAYRMSKAAINMFGRTLAVD-L---KDDNVLVVNFCPGWVQTNLGGK--------------- 212 (250)
T ss_dssp C-----STTSSS----CBHHHHHHHHHHHHHHHHHHHH-T---GGGTCEEEEEECCCC----------------------
T ss_pred c-----cccccC----CccHHHHHHHHHHHHHHHHHHH-h---ccCCeEEEEEcCCceecCCCCC---------------
Confidence 1 111111 2367999999999999776532 1 1358999999999998774221
Q ss_pred eeeCCCCccccceeHHHHHHHHHHHHhc
Q 011770 218 FKIGEPSVKTDWIYVDNLVLALILASMG 245 (478)
Q Consensus 218 ~~~g~g~~~~~~v~V~Dva~a~~~a~~~ 245 (478)
..+++.+|+|++++.++..
T Consensus 213 ---------~~~~~~~~~a~~~~~~~~~ 231 (250)
T 1yo6_A 213 ---------NAALTVEQSTAELISSFNK 231 (250)
T ss_dssp ---------------HHHHHHHHHHHTT
T ss_pred ---------CCCCCHHHHHHHHHHHHhc
Confidence 1357899999999999873
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=194.88 Aligned_cols=225 Identities=16% Similarity=0.144 Sum_probs=161.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc------CcC
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR------GVD 80 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~------~~D 80 (478)
+++++|++|||||+|+||++++++|.++|++ |++++|+.... .......+.++++|++|.++++++++ ++|
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id 81 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQ-VVVLDIRGEDV--VADLGDRARFAAADVTDEAAVASALDLAETMGTLR 81 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCHHH--HHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCchHHH--HHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence 4467899999999999999999999999999 99999854321 12234578999999999999988876 799
Q ss_pred EEEEcccCCCCc--------hhhhchhhhhHhhhHHHHHHHHHHHHcC------------CCeEEEEeccceeeCCcccc
Q 011770 81 CVFHVASYGMSG--------KEMLQFGRVDEVNINGTCHVIEACLEFG------------IQRLVYVSTYNVVFGGKEIV 140 (478)
Q Consensus 81 ~ViHlAa~~~~~--------~~~~~~~~~~~vNv~gt~nll~aa~~~~------------v~r~V~~SS~~v~~g~~~~~ 140 (478)
++||+||..... .+..+++..+++|+.|+.++++++.+.- -.++|++||...+.+...
T Consensus 82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-- 159 (257)
T 3tl3_A 82 IVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIG-- 159 (257)
T ss_dssp EEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHHH--
T ss_pred EEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCCC--
Confidence 999999964321 2334567889999999999999998642 348999999887432211
Q ss_pred CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeee
Q 011770 141 NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 141 ~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~ 220 (478)
...|+.||...+.+++....+ + ...|+++.+++|+.|..+......+..........+.
T Consensus 160 --------------~~~Y~asKaa~~~~~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--- 218 (257)
T 3tl3_A 160 --------------QAAYSASKGGVVGMTLPIARD-L---ASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPH--- 218 (257)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCTTC---CHHHHHHHHHTSSS---
T ss_pred --------------CccHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEEecCccChhhhhccHHHHHHHHhcCCC---
Confidence 257999999999888765432 1 1468999999999999886544333333333332221
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
...+.+.+|+|++++.++. .+...|+++++.+|..+.
T Consensus 219 -----~~r~~~p~dva~~v~~l~s-----------~~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 -----PSRLGNPDEYGALAVHIIE-----------NPMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp -----SCSCBCHHHHHHHHHHHHH-----------CTTCCSCEEEESTTC---
T ss_pred -----CCCccCHHHHHHHHHHHhc-----------CCCCCCCEEEECCCccCC
Confidence 1357789999999999887 235789999998886543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=194.71 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=158.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHh-------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAA------- 76 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l------- 76 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|.+++++++
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467799999999999999999999999998 99999875421100 0 11346889999999999988877
Q ss_pred -cCcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 77 -RGVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 77 -~~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
.++|++||+||..... .+..+.+..+++|+.|+.++++++. +.+..++|++||...+.+.
T Consensus 97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----------- 165 (273)
T 1ae1_A 97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL----------- 165 (273)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC-----------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCC-----------
Confidence 4689999999975332 1334567788999999999999885 4466799999998874221
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH------HHHHHHHcCCCCeeeC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP------RIVSLAKLGLVPFKIG 221 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~------~~i~~~~~g~~~~~~g 221 (478)
| ....|+.||...|.+.+....+ + ...|+++++++|+.|++|....... .....+....+
T Consensus 166 --~---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p----- 231 (273)
T 1ae1_A 166 --P---SVSLYSASKGAINQMTKSLACE-W---AKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP----- 231 (273)
T ss_dssp --T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBC-------------CHHHHHHHHHHST-----
T ss_pred --C---CcchhHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC-----
Confidence 1 1267999999999998766431 1 1368999999999999986432211 12222221111
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
...+.+.+|+|++++.++... .....|+.+++.+|..
T Consensus 232 ----~~r~~~p~dvA~~v~~l~s~~---------~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 232 ----MGRAGKPQEVSALIAFLCFPA---------ASYITGQIIWADGGFT 268 (273)
T ss_dssp ----TCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred ----CCCCcCHHHHHHHHHHHhCcc---------ccCcCCCEEEECCCcc
Confidence 124778999999998887521 1235789999988754
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=196.35 Aligned_cols=227 Identities=15% Similarity=0.160 Sum_probs=161.3
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c-ccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L-LINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~-~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
.++++++|+++||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|.++++++++
T Consensus 23 ~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (276)
T 2b4q_A 23 PYFSLAGRIALVTGGSRGIGQMIAQGLLEAGAR-VFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGE 101 (276)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 344567899999999999999999999999998 99999875421100 0 111268889999999999888775
Q ss_pred ---CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCC----CeEEEEeccceeeCCccccCC
Q 011770 78 ---GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGI----QRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v----~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|+|||+||..... .+..+++..+++|+.|+.++++++.+ .+. +++|++||...+.+..
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~----- 176 (276)
T 2b4q_A 102 LSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMG----- 176 (276)
T ss_dssp HCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCC-----
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCC-----
Confidence 689999999965332 23345678899999999888887753 344 7999999987642211
Q ss_pred CCCCCCCCCCccCC-chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHc--CCCCee
Q 011770 143 NESLPYFPIDEHVD-SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKL--GLVPFK 219 (478)
Q Consensus 143 ~E~~p~~p~~~~~~-~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~--g~~~~~ 219 (478)
. .. .|+.||...|.+++.+..+ + ...++++++++|+.+.++............... ..
T Consensus 177 --------~---~~~~Y~asK~a~~~~~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---- 237 (276)
T 2b4q_A 177 --------E---QAYAYGPSKAALHQLSRMLAKE-L---VGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASI---- 237 (276)
T ss_dssp --------C---SCTTHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHTS----
T ss_pred --------C---CccccHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEeccCcCcchhhcchhHHHHHHhhcCC----
Confidence 0 13 7999999999998776431 1 136899999999999987543211111111111 11
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+.+.+|+|++++.++... .....|+.+++.+|.
T Consensus 238 -----p~~r~~~p~dvA~~v~~l~s~~---------~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 238 -----PMGRWGRPEEMAALAISLAGTA---------GAYMTGNVIPIDGGF 274 (276)
T ss_dssp -----TTSSCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTT
T ss_pred -----CCCCcCCHHHHHHHHHHHhCcc---------ccCCCCCEEEeCCCc
Confidence 1234789999999999887631 124578999998774
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=193.50 Aligned_cols=225 Identities=17% Similarity=0.089 Sum_probs=160.8
Q ss_pred CCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 7 EGIEGKTFLVTGGLGH-VGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGf-IG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
..+++|+++||||+|+ ||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 96 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTV 96 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 4467899999999985 999999999999999 99999875421110 1113578999999999999888775
Q ss_pred ----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccccCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+|+...... +..+.+..+++|+.|+.++++++... +..++|++||...+.+..
T Consensus 97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------- 169 (266)
T 3o38_A 97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQH------- 169 (266)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCT-------
T ss_pred HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCC-------
Confidence 6799999999754322 33456778999999999999998875 456899999987642211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g 223 (478)
+ ...|+.||...|.+++.+..+ + ...|+++.+++|+.|.++...... +.... .....
T Consensus 170 -----~----~~~Y~~sKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~---------~~~~~ 227 (266)
T 3o38_A 170 -----S----QSHYAAAKAGVMALTRCSAIE-A---VEFGVRINAVSPSIARHKFLEKTSSSELLD---------RLASD 227 (266)
T ss_dssp -----T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCCCC--------------------------C
T ss_pred -----C----CchHHHHHHHHHHHHHHHHHH-H---HHcCcEEEEEeCCcccchhhhccCcHHHHH---------HHHhc
Confidence 1 267999999999998766431 1 136899999999999887543211 11111 11222
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.....+.+.+|+|++++.++... .....|+++++.+|.
T Consensus 228 ~~~~r~~~~~dva~~i~~l~s~~---------~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 228 EAFGRAAEPWEVAATIAFLASDY---------SSYMTGEVVSVSSQR 265 (266)
T ss_dssp CTTSSCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESSCC
T ss_pred CCcCCCCCHHHHHHHHHHHcCcc---------ccCccCCEEEEcCCc
Confidence 33456789999999999887631 234679999998874
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=193.45 Aligned_cols=229 Identities=13% Similarity=0.089 Sum_probs=164.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++|++|||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999998 99999875421110 1123468899999999999888776
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH-----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL-----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~-----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+||..... .+..+++..+++|+.|+.++.+++. +.+..++|++||...+.+..
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 151 (257)
T 3imf_A 82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGP---------- 151 (257)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCC----------
Confidence 689999999964332 2334567889999999999999984 33467999999987642211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH---HHHHHHHHcCCCCeeeCCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL---PRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~---~~~i~~~~~g~~~~~~g~g~ 224 (478)
....|+.||...+.+.+....+ +.+ ..|+++.+++|+.|+++...... +.+.+..... .
T Consensus 152 ------~~~~Y~asKaa~~~l~~~la~e-~~~--~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~ 213 (257)
T 3imf_A 152 ------GVIHSAAAKAGVLAMTKTLAVE-WGR--KYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQS---------V 213 (257)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHHH-HHH--HHCCEEEEEEECCBSSCCCC-------CCSHHHHTT---------S
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHH-hcc--ccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhc---------C
Confidence 1257999999999998766531 100 24899999999999998643211 1111112221 1
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
....+.+.+|+|++++.++... .....|+.+++.+|..++.
T Consensus 214 p~~r~~~pedvA~~v~~L~s~~---------~~~itG~~i~vdGG~~~~~ 254 (257)
T 3imf_A 214 PLGRLGTPEEIAGLAYYLCSDE---------AAYINGTCMTMDGGQHLHQ 254 (257)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTTTSCC
T ss_pred CCCCCcCHHHHHHHHHHHcCch---------hcCccCCEEEECCCcccCC
Confidence 2235788999999999887631 2245799999999876653
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=195.52 Aligned_cols=223 Identities=14% Similarity=0.117 Sum_probs=161.3
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCc--cccc-ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSP--WSHL-LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--~~~~-~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||+ |+||++++++|+++|++ |++++|+.... .... ....++.++++|++|.++++++++
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQ-LAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENW 97 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 667899999999 99999999999999998 99999875310 0000 111347889999999999888775
Q ss_pred -CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcCC---CeEEEEeccceeeCCccccCCCCC
Q 011770 78 -GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFGI---QRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 -~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~v---~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+||.... ..+..+.+..+++|+.|+.++++++.+.-. .++|++||...+.+.
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 168 (285)
T 2p91_A 98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVV--------- 168 (285)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBC---------
T ss_pred CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCC---------
Confidence 68999999997542 123345678899999999999999987633 699999998763221
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g 223 (478)
| ....|+.||...|.+++.+..+ + ...|+++++++|+.|++|..... .+.....+....+.
T Consensus 169 ----~---~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~------ 231 (285)
T 2p91_A 169 ----P---HYNVMGIAKAALESTVRYLAYD-I---AKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPF------ 231 (285)
T ss_dssp ----T---TTTHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTT------
T ss_pred ----C---CccHHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCC------
Confidence 1 1257999999999998766431 1 13689999999999999865431 23333333322221
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..+.+++|+|++++.++... .....|+.|++.+|.
T Consensus 232 ---~~~~~~~dva~~~~~l~s~~---------~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 232 ---GKPITIEDVGDTAVFLCSDW---------ARAITGEVVHVDNGY 266 (285)
T ss_dssp ---SSCCCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTG
T ss_pred ---CCCcCHHHHHHHHHHHcCCc---------ccCCCCCEEEECCCc
Confidence 23668999999999887521 123568899998874
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=195.37 Aligned_cols=227 Identities=17% Similarity=0.120 Sum_probs=164.7
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
|+..+++|++|||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (264)
T 3ucx_A 5 MGGLLTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETM 83 (264)
T ss_dssp --CTTTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 344577899999999999999999999999999 99999865421110 1123568899999999999888775
Q ss_pred ----CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCC
Q 011770 78 ----GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|++||+|+.... ..+..+++..+++|+.|+.++++++... + .++|++||...+.+..
T Consensus 84 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~------- 155 (264)
T 3ucx_A 84 KAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHSQA------- 155 (264)
T ss_dssp HHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCCCT-------
T ss_pred HHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccCCC-------
Confidence 68999999986321 1233456788999999999999987643 3 5999999987642211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-----------HHHHHHHHc
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-----------PRIVSLAKL 213 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-----------~~~i~~~~~ 213 (478)
+ ...|+.||...|.+.+....+ + +.+|+++.+++|+.|++|...... ..+......
T Consensus 156 -----~----~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (264)
T 3ucx_A 156 -----K----YGAYKMAKSALLAMSQTLATE-L---GEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAA 222 (264)
T ss_dssp -----T----CHHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred -----c----cHHHHHHHHHHHHHHHHHHHH-h---CccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhc
Confidence 1 257999999999998766431 1 136899999999999988533221 112222222
Q ss_pred CCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 214 GLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 214 g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+ .....+.+.+|+|++++.++... .....|+++++.+|..
T Consensus 223 ~---------~p~~r~~~p~dvA~~v~~L~s~~---------~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 223 G---------SDLKRLPTEDEVASAILFMASDL---------ASGITGQALDVNCGEY 262 (264)
T ss_dssp T---------SSSSSCCBHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTSS
T ss_pred c---------CCcccCCCHHHHHHHHHHHcCcc---------ccCCCCCEEEECCCcc
Confidence 2 23356789999999999887521 2246799999988864
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-23 Score=198.29 Aligned_cols=247 Identities=15% Similarity=0.160 Sum_probs=170.1
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----------------ccccCCCeEEEEecCCCH
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----------------HLLINHGVHCIQGDVVSK 69 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----------------~~~~~~~v~~v~gDl~d~ 69 (478)
|.++++|++|||||+|+||++++++|+++|++ |++++|+...... ......++.++++|++|.
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDR 83 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence 44578899999999999999999999999999 9999987321100 011235688999999999
Q ss_pred HHHHHHhc-------CcCEEEEcccCCCCc--hhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCcc
Q 011770 70 IDVEKAAR-------GVDCVFHVASYGMSG--KEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKE 138 (478)
Q Consensus 70 ~~l~~~l~-------~~D~ViHlAa~~~~~--~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~ 138 (478)
++++++++ ++|+|||+||..... .+..+++..+++|+.|+.++++++...- -.++|++||...+.+. .
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-~ 162 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAA-A 162 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHH-H
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccc-c
Confidence 99888776 789999999975433 2345677899999999999999998763 3489999998875332 2
Q ss_pred ccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCC-CC
Q 011770 139 IVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGL-VP 217 (478)
Q Consensus 139 ~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~-~~ 217 (478)
..+..|..+.. ....|+.||...|.+.+....+ + +..|+++.+++|+.|+++....... ........ ..
T Consensus 163 ~~~~~~~~~~~----~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~ 232 (287)
T 3pxx_A 163 QPPGAGGPQGP----GGAGYSYAKQLVDSYTLQLAAQ-L---APQSIRANVIHPTNVNTDMLNSAPM--YRQFRPDLEAP 232 (287)
T ss_dssp CCC-----CHH----HHHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEESSBSSTTTSSHHH--HHHHCTTSSSC
T ss_pred ccccccccCCC----ccchHHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEecCccccccccccch--hhhhccccccc
Confidence 22223322211 2367999999999998776532 1 1358999999999999986543110 01110000 00
Q ss_pred e-------eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 218 F-------KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 218 ~-------~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
. ..........+.+.+|+|++++.++... .....|+++++.+|..++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~---------a~~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 233 SRADALLAFPAMQAMPTPYVEASDISNAVCFLASDE---------SRYVTGLQFKVDAGAMLK 286 (287)
T ss_dssp CHHHHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGG
T ss_pred hhHHHHhhhhhhcccCCCCCCHHHHHhhHheecchh---------hcCCCCceEeECchhhhc
Confidence 0 0001112257899999999999887521 224679999999886543
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=193.28 Aligned_cols=224 Identities=13% Similarity=0.094 Sum_probs=162.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
+.++++|+|+||||+|+||++++++|+++|++ |++++++....... .....++.++.+|++|.++++++++
T Consensus 21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~-v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFN-IGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 34567789999999999999999999999998 87776554321111 1123578999999999999888776
Q ss_pred ----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH-----HcCCCeEEEEeccceeeCCccccCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL-----EFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~-----~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+||...... +..+.+..+++|+.|+.++++++. +.+..++|++||...+.+..
T Consensus 100 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 172 (267)
T 4iiu_A 100 AQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNR------- 172 (267)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCT-------
T ss_pred HHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCC-------
Confidence 7899999999754322 344667889999999999999884 45567999999987754321
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
+ ...|+.||...+.+.+....+ + ...|+++.+++|+.|.++..... +..........+
T Consensus 173 -----~----~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~p-------- 230 (267)
T 4iiu_A 173 -----G----QVNYSAAKAGIIGATKALAIE-L---AKRKITVNCIAPGLIDTGMIEME-ESALKEAMSMIP-------- 230 (267)
T ss_dssp -----T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSTTCCCC-HHHHHHHHHTCT--------
T ss_pred -----C----CchhHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEEEeeecCCccccc-HHHHHHHHhcCC--------
Confidence 1 267999999888877655431 1 13689999999999999876543 333333333322
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+.+.+|+|+++..++... .....|+++++.+|
T Consensus 231 -~~~~~~~edva~~~~~L~s~~---------~~~itG~~i~vdGG 265 (267)
T 4iiu_A 231 -MKRMGQAEEVAGLASYLMSDI---------AGYVTRQVISINGG 265 (267)
T ss_dssp -TCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTT
T ss_pred -CCCCcCHHHHHHHHHHHhCCc---------ccCccCCEEEeCCC
Confidence 234678999999999887631 23467999999876
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=192.18 Aligned_cols=224 Identities=19% Similarity=0.176 Sum_probs=158.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-ccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+........ ....++.++.+|++|.++++++++ ++|
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD 81 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVD 81 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 56789999999999999999999999998 999998754211100 112458889999999999988876 799
Q ss_pred EEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHH----HHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIE----ACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~----aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+|+..... .+..+++..+++|+.|+.++.+ .+++.+..++|++||...+.+.+ +
T Consensus 82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------~-- 147 (254)
T 1hdc_A 82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLA------------L-- 147 (254)
T ss_dssp EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------------T--
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCC------------C--
Confidence 999999965432 2334567889999999985544 45556778999999987743211 1
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccce-e
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWI-Y 231 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v-~ 231 (478)
...|+.||...|.+.+....+ + ...+++++++||+.|+++... .... ..............+. +
T Consensus 148 --~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~--------~~~~-~~~~~~~~~~p~~~~~~~ 212 (254)
T 1hdc_A 148 --TSSYGASKWGVRGLSKLAAVE-L---GTDRIRVNSVHPGMTYTPMTA--------ETGI-RQGEGNYPNTPMGRVGNE 212 (254)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHH--------HHTC-CCSTTSCTTSTTSSCB-C
T ss_pred --chhHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEecccCcCcccc--------ccch-hHHHHHHhcCCCCCCCCC
Confidence 267999999999988766431 1 136899999999999987311 1111 1000011111223467 9
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.+|+|++++.++... .....|+.+++.+|..
T Consensus 213 ~~dvA~~v~~l~s~~---------~~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 213 PGEIAGAVVKLLSDT---------SSYVTGAELAVDGGWT 243 (254)
T ss_dssp HHHHHHHHHHHHSGG---------GTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHHhCch---------hcCCCCCEEEECCCcc
Confidence 999999999887621 1245789999988754
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=191.20 Aligned_cols=223 Identities=18% Similarity=0.181 Sum_probs=159.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|.++++++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGAN-VVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF 80 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999998 99998843321110 0 113468899999999999988776
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+||..... .+..+++..+++|+.|+.++.+++. +.+.+++|++||...+++.+
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 149 (246)
T 2uvd_A 81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNP----------- 149 (246)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCC-----------
Confidence 789999999975432 1334567889999999777777665 45678999999987643321
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
....|+.||...+.+.+....+ + ...|+++++++|+.+.++......+..........+ ...
T Consensus 150 -----~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p---------~~~ 211 (246)
T 2uvd_A 150 -----GQANYVAAKAGVIGLTKTSAKE-L---ASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIP---------AAQ 211 (246)
T ss_dssp -----TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBGGGCSSCCCTTHHHHHHHTCT---------TCS
T ss_pred -----CCchHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEEeccccCcchhhcCHHHHHHHHhcCC---------CCC
Confidence 1267999999999887665421 1 136899999999999987543211111122222211 134
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+.+.+|+|++++.++... .....|+.+++.+|.
T Consensus 212 ~~~~~dvA~~~~~l~s~~---------~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 212 FGEAQDIANAVTFFASDQ---------SKYITGQTLNVDGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCch---------hcCCCCCEEEECcCc
Confidence 789999999999887521 123578999998774
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=195.35 Aligned_cols=223 Identities=18% Similarity=0.161 Sum_probs=154.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++++|+||||+|+||++++++|+++|++ |++++++....... .....++.++.+|++|.++++++++
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 103 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG 103 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999998 98875443321111 1123568899999999999888776
Q ss_pred CcCEEEEcccCCCCch-----hhhchhhhhHhhhHHHHHHHHHHHHc-------CCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 GVDCVFHVASYGMSGK-----EMLQFGRVDEVNINGTCHVIEACLEF-------GIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~-----~~~~~~~~~~vNv~gt~nll~aa~~~-------~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+||...... +..+.+..+++|+.|+.++++++.+. +..++|++||...+++...
T Consensus 104 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 176 (272)
T 4e3z_A 104 RLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSAT------- 176 (272)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTT-------
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCC-------
Confidence 6899999999754311 34456788999999999999998765 3458999999887543211
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeCCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
....|+.||...|.+++.+..+ + ...|+++++++|+.|+++.... ..+.....+..+ .
T Consensus 177 --------~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~ 235 (272)
T 4e3z_A 177 --------QYVDYAASKAAIDTFTIGLARE-V---AAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPS---------V 235 (272)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBC------------------C---------C
T ss_pred --------CcchhHHHHHHHHHHHHHHHHH-H---HHcCcEEEEEecCCCcCCcccccCChHHHHHHhhc---------C
Confidence 0256999999999988766432 1 1358999999999999985432 112111111111 2
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+.+++|+|++++.++... .....|++|++.+|.
T Consensus 236 ~~~~~~~~edvA~~i~~l~s~~---------~~~~tG~~i~vdgG~ 272 (272)
T 4e3z_A 236 PMQRAGMPEEVADAILYLLSPS---------ASYVTGSILNVSGGR 272 (272)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTC
T ss_pred CcCCCcCHHHHHHHHHHHhCCc---------cccccCCEEeecCCC
Confidence 2345678999999999888631 224679999998763
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=195.39 Aligned_cols=225 Identities=15% Similarity=0.129 Sum_probs=165.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++++....... ......+.++++|++|.++++++++
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAK-VAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999 99998854422111 1123568899999999999888776
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+++..+++|+.|+.++++++.+ .+..++|++||...+.+...
T Consensus 104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 174 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPG--------- 174 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTT---------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCC---------
Confidence 789999999975432 23456678899999999999998754 45679999999877433211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
...|+.||...|.+.+....+ + +..|+++.+++|+.|+++....... ....... ...
T Consensus 175 -------~~~Y~asK~a~~~l~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~---------p~~ 231 (269)
T 4dmm_A 175 -------QANYSAAKAGVIGLTKTVAKE-L---ASRGITVNAVAPGFIATDMTSELAA---EKLLEVI---------PLG 231 (269)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBTTSCSCHHHH---HHHGGGC---------TTS
T ss_pred -------chhHHHHHHHHHHHHHHHHHH-H---hhhCcEEEEEEECCCcCcccccccH---HHHHhcC---------CCC
Confidence 267999999999888765431 1 1368999999999999986543221 2222222 223
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.+.+.+|+|++++.++.... .....|+++++.+|..++
T Consensus 232 r~~~~~dvA~~v~~l~s~~~--------~~~itG~~i~vdGG~~~s 269 (269)
T 4dmm_A 232 RYGEAAEVAGVVRFLAADPA--------AAYITGQVINIDGGLVMA 269 (269)
T ss_dssp SCBCHHHHHHHHHHHHHCGG--------GGGCCSCEEEESTTSCCC
T ss_pred CCCCHHHHHHHHHHHhCCcc--------cCCCcCCEEEECCCeecC
Confidence 57789999999998886200 113569999999886543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=192.82 Aligned_cols=228 Identities=20% Similarity=0.232 Sum_probs=165.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.++++++++ +
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAY-VVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGR 101 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999998 99999875421111 1124568899999999999888776 7
Q ss_pred cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+||..... .+..+.+..+++|+.|+.++.+++.+ .+..++|++||...+.+.. +
T Consensus 102 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------~ 169 (277)
T 4dqx_A 102 VDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIA------------D 169 (277)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCT------------T
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCC------------C
Confidence 89999999975432 23345677889999999999998864 3456999999987742211 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCC
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
...|+.||...|.+++.+..+ + ...|+++.+++|+.|.++... ............. .
T Consensus 170 ----~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~---------~ 232 (277)
T 4dqx_A 170 ----RTAYVASKGAISSLTRAMAMD-H---AKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNAR---------A 232 (277)
T ss_dssp ----BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTT---------S
T ss_pred ----ChhHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhc---------C
Confidence 267999999999998766432 1 136899999999999876311 0111111112222 2
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
....+.+.+|+|++++.++... .....|+.+++.+|..++
T Consensus 233 ~~~r~~~pedvA~~v~~L~s~~---------~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 233 VMDRMGTAEEIAEAMLFLASDR---------SRFATGSILTVDGGSSIG 272 (277)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESSSSSSC
T ss_pred cccCCcCHHHHHHHHHHHhCCc---------cCCCcCCEEEECCchhhh
Confidence 3345778999999999887631 224679999999887665
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-22 Score=189.68 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=154.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCC-CHHHHHHHhcCcCEEEE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV-SKIDVEKAARGVDCVFH 84 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~-d~~~l~~~l~~~D~ViH 84 (478)
...+++|+|+||||+|+||++++++|+++|++ |++++|+.. .......+.++ +|+. +.+.+.+.+.++|+|||
T Consensus 14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~----~~~~~~~~~~~-~D~~~~~~~~~~~~~~iD~lv~ 87 (249)
T 1o5i_A 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEE----LLKRSGHRYVV-CDLRKDLDLLFEKVKEVDILVL 87 (249)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHH----HHHHTCSEEEE-CCTTTCHHHHHHHSCCCSEEEE
T ss_pred HhccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHH----HHHhhCCeEEE-eeHHHHHHHHHHHhcCCCEEEE
Confidence 34578899999999999999999999999998 999998752 11111356677 9993 33444444558999999
Q ss_pred cccCCCCch----hhhchhhhhHhhhHHHHHHHHH----HHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 85 VASYGMSGK----EMLQFGRVDEVNINGTCHVIEA----CLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 85 lAa~~~~~~----~~~~~~~~~~vNv~gt~nll~a----a~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
+||...... +..+.+..+++|+.|+.++.++ +++.+.+++|++||..++.+. | ...
T Consensus 88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------~---~~~ 151 (249)
T 1o5i_A 88 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI-------------E---NLY 151 (249)
T ss_dssp CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------------T---TBH
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCC-------------C---CCc
Confidence 999654321 2345677889999997766554 556677899999998874221 1 126
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHH-HHHcCCCCeeeCCCCccccceeHHHH
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVS-LAKLGLVPFKIGEPSVKTDWIYVDNL 235 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~-~~~~g~~~~~~g~g~~~~~~v~V~Dv 235 (478)
.|+.||...|.+.+....+ + ...|++++++||+.++++......+.... .+.... ....+.+.+|+
T Consensus 152 ~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------p~~~~~~~~dv 218 (249)
T 1o5i_A 152 TSNSARMALTGFLKTLSFE-V---APYGITVNCVAPGWTETERVKELLSEEKKKQVESQI---------PMRRMAKPEEI 218 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTS---------TTSSCBCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCCCccCcccccchhhHHHHHHhcC---------CCCCCcCHHHH
Confidence 7999999999988765431 1 13689999999999999853211111112 222221 12357899999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 236 VLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 236 a~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
|++++.++... .....|+.|++.+|..
T Consensus 219 A~~i~~l~s~~---------~~~~tG~~~~vdgG~~ 245 (249)
T 1o5i_A 219 ASVVAFLCSEK---------ASYLTGQTIVVDGGLS 245 (249)
T ss_dssp HHHHHHHHSGG---------GTTCCSCEEEESTTCC
T ss_pred HHHHHHHcCcc---------ccCCCCCEEEECCCcc
Confidence 99998887521 1235689999988754
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=194.15 Aligned_cols=233 Identities=18% Similarity=0.160 Sum_probs=157.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++.+|++|.++++++++ +
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 83 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGK 83 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 4577899999999999999999999999998 99999875422111 1124568999999999999888776 6
Q ss_pred cCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHcC--------CCeEEEEeccceeeCCccccCCCCC
Q 011770 79 VDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEFG--------IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 79 ~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~~--------v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
+|+|||+|+..... .+..+.+..+++|+.|+.++++++.+.- ..++|++||...+.+.
T Consensus 84 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 154 (261)
T 3n74_A 84 VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPR--------- 154 (261)
T ss_dssp CCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCC---------
T ss_pred CCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCC---------
Confidence 89999999975421 1334567788999999999999886542 3369999998763211
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCc
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
| ....|+.||...|.+++....+ + ...++++.+++|+.+.++............ ....+.+...
T Consensus 155 ----~---~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~-----~~~~~~~~~~ 218 (261)
T 3n74_A 155 ----P---NLAWYNATKGWVVSVTKALAIE-L---APAKIRVVALNPVAGETPLLTTFMGEDSEE-----IRKKFRDSIP 218 (261)
T ss_dssp ----T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEEC------------------------------CT
T ss_pred ----C---CccHHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEecCcccChhhhhhcccCcHH-----HHHHHhhcCC
Confidence 1 1257999999999998776532 1 136899999999999988544322111000 0111222234
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
...+++.+|+|++++.++... .....|+++++.+|..++.
T Consensus 219 ~~~~~~~~dva~~~~~l~s~~---------~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 219 MGRLLKPDDLAEAAAFLCSPQ---------ASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp TSSCCCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTTTC--
T ss_pred cCCCcCHHHHHHHHHHHcCCc---------ccCcCCcEEEecCCcccCC
Confidence 457899999999999887521 2346799999999887764
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-22 Score=190.86 Aligned_cols=228 Identities=17% Similarity=0.169 Sum_probs=160.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--cc--CCCeEEEEecCCCHHHHHHHhc---
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LI--NHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~--~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
.++++|+++||||+|+||++++++|+++|++ |++++|+....... . .. ..++.++++|++|.++++++++
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 87 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 87 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999998 99999875421110 0 01 3568899999999999988776
Q ss_pred ----CcCEEEEcccCCCC-c----hhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCC
Q 011770 78 ----GVDCVFHVASYGMS-G----KEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~-~----~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+||.... . .+..+.+..+++|+.|+.++.+++ ++.+..++|++||...+.+.
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 159 (267)
T 1iy8_A 88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI-------- 159 (267)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC--------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCC--------
Confidence 68999999997533 1 123456788899999988766655 45567899999998764221
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--------cHHHHHHHHHcCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--------HLPRIVSLAKLGLV 216 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--------~~~~~i~~~~~g~~ 216 (478)
| ....|+.||...|.+.+....+ + ...|+++++++|+.|+++.... ........+...
T Consensus 160 -----~---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-- 225 (267)
T 1iy8_A 160 -----G---NQSGYAAAKHGVVGLTRNSAVE-Y---GRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQV-- 225 (267)
T ss_dssp -----S---SBHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTT--
T ss_pred -----C---CCccHHHHHHHHHHHHHHHHHH-H---HhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhcc--
Confidence 1 1267999999999988765431 1 1368999999999998873211 001000111111
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.....+.+.+|+|++++.++... .....|+.+++.+|...+
T Consensus 226 -------~p~~r~~~~~dvA~~v~~l~s~~---------~~~~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 226 -------NPSKRYGEAPEIAAVVAFLLSDD---------ASYVNATVVPIDGGQSAA 266 (267)
T ss_dssp -------CTTCSCBCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTTTTB
T ss_pred -------CCCCCCcCHHHHHHHHHHHcCcc---------ccCCCCCEEEECCCcccC
Confidence 11235789999999999887521 123578999998886543
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=188.97 Aligned_cols=220 Identities=17% Similarity=0.175 Sum_probs=157.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
..+++|+++||||+|+||++++++|+++|++ |++++|+.... ..+..+++|++|.++++++++ ++
T Consensus 11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 82 (247)
T 1uzm_A 11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAP-------KGLFGVEVDVTDSDAVDRAFTAVEEHQGPV 82 (247)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCC-------TTSEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHH-------HHhcCeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 3467789999999999999999999999998 99999876522 112248899999999888775 57
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+||..... .+..+++..+++|+.|+.++++++.+ .+..++|++||...+++.. +
T Consensus 83 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------~- 149 (247)
T 1uzm_A 83 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG------------N- 149 (247)
T ss_dssp SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------C-
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCC------------C-
Confidence 9999999975322 23446678899999999999998864 4667999999987643321 1
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||...|.+.+....+ + ...|+++++++|+.+.++................. ....+.+
T Consensus 150 ---~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~~~~~ 213 (247)
T 1uzm_A 150 ---QANYAASKAGVIGMARSIARE-L---SKANVTANVVAPGYIDTDMTRALDERIQQGALQFI---------PAKRVGT 213 (247)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGC---------TTCSCBC
T ss_pred ---ChhHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEEeCCCcccchhhcCHHHHHHHHhcC---------CCCCCcC
Confidence 257999999999888765431 1 13689999999999987632111111112121111 1235789
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+|+|++++.++... .....|+.+++.+|..+
T Consensus 214 ~~dvA~~~~~l~s~~---------~~~~~G~~i~vdgG~~~ 245 (247)
T 1uzm_A 214 PAEVAGVVSFLASED---------ASYISGAVIPVDGGMGM 245 (247)
T ss_dssp HHHHHHHHHHHHSGG---------GTTCCSCEEEESTTTTC
T ss_pred HHHHHHHHHHHcCcc---------ccCCcCCEEEECCCccc
Confidence 999999999887521 12457899999887543
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-22 Score=187.61 Aligned_cols=223 Identities=19% Similarity=0.158 Sum_probs=161.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+..... ......++.++++|++|.++++++++ ++|+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 80 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPLR-EAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDG 80 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHH-HHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 56789999999999999999999999999 999998753211 11111148889999999999888775 4899
Q ss_pred EEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|||+||...... +..+.+..+++|+.|+.++.+++.+. +..++|++||.. +++...
T Consensus 81 lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~~--------------- 144 (245)
T 1uls_A 81 VVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNLG--------------- 144 (245)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCTT---------------
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCCC---------------
Confidence 999999653321 23456778899999999999988764 567999999987 443211
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
...|+.||...+.+.+....+ + ...|+++++++|+.|.++......+..........+ ...+.+.+
T Consensus 145 -~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~~~~~~~ 210 (245)
T 1uls_A 145 -QANYAASMAGVVGLTRTLALE-L---GRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATP---------LGRAGKPL 210 (245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCT---------TCSCBCHH
T ss_pred -chhHHHHHHHHHHHHHHHHHH-H---hHhCeEEEEEEeCcCcCcchhhcCHHHHHHHHhhCC---------CCCCcCHH
Confidence 257999999999888765431 1 136899999999999888644322222222222211 12377899
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
|+|++++.++... .....|+.+++.+|..+
T Consensus 211 dvA~~v~~l~s~~---------~~~~tG~~~~vdgG~~~ 240 (245)
T 1uls_A 211 EVAYAALFLLSDE---------SSFITGQVLFVDGGRTI 240 (245)
T ss_dssp HHHHHHHHHHSGG---------GTTCCSCEEEESTTTTT
T ss_pred HHHHHHHHHhCch---------hcCCcCCEEEECCCccc
Confidence 9999999887621 22457899999877543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-22 Score=191.48 Aligned_cols=231 Identities=18% Similarity=0.167 Sum_probs=163.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+.++++|+++||||+|+||++++++|+++|++ |++++|++...........++.++++|++|.++++++++ +
T Consensus 4 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (270)
T 1yde_A 4 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGR 82 (270)
T ss_dssp CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 34577899999999999999999999999998 999998754221111122358899999999999888776 6
Q ss_pred cCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+||..... .+..+.+..+++|+.|+.++++++.+. +..++|++||...+++...
T Consensus 83 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------ 150 (270)
T 1yde_A 83 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQ------------ 150 (270)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTT------------
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCCC------------
Confidence 89999999964321 123346778899999999999998742 2479999999876433211
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHHHHHHcCCCCeeeCCCC
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
...|+.||...|.+.+.+..+ + ..+|++++++||+.|++|.... .....+.......
T Consensus 151 ----~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--------- 213 (270)
T 1yde_A 151 ----AVPYVATKGAVTAMTKALALD-E---SPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ--------- 213 (270)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS---------
T ss_pred ----CcccHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcC---------
Confidence 257999999999998776431 1 1368999999999999974211 0000011111111
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHH
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE 276 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e 276 (478)
....+...+|++++++.++.. .....|+.+++.+|..+...+
T Consensus 214 p~~r~~~p~dva~~v~~L~s~----------~~~itG~~i~vdGG~~~~~~~ 255 (270)
T 1yde_A 214 PLGRMGQPAEVGAAAVFLASE----------ANFCTGIELLVTGGAELGYGC 255 (270)
T ss_dssp TTSSCBCHHHHHHHHHHHHHH----------CTTCCSCEEEESTTTTSCC--
T ss_pred CCCCCcCHHHHHHHHHHHccc----------CCCcCCCEEEECCCeecccCc
Confidence 112367899999999887762 124678999999887766543
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=191.53 Aligned_cols=219 Identities=19% Similarity=0.181 Sum_probs=162.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
...++|+||||||+|+||++++++|+++|++ |++++|+.... ...+..+++|++|.+++.++++ ++
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 82 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAK-VVSVSLDEKSD------VNVSDHFKIDVTNEEEVKEAVEKTTKKYGRI 82 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCC--C------TTSSEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCchhc------cCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4577899999999999999999999999999 99999876522 2357889999999999888776 78
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+||...... +..+.+..+++|+.|+.++++++.. .+..++|++||...+.+..
T Consensus 83 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 148 (269)
T 3vtz_A 83 DILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATK-------------- 148 (269)
T ss_dssp CEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT--------------
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCC--------------
Confidence 99999999754322 2345567889999999999998765 4667999999988743211
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-----------HHHHHHHHHcCCCCeee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-----------LPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-----------~~~~i~~~~~g~~~~~~ 220 (478)
....|+.||...|.+++.+..+. ..++++.+++|+.|+++..... ...........
T Consensus 149 --~~~~Y~asKaa~~~l~~~la~e~-----~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 215 (269)
T 3vtz_A 149 --NAAAYVTSKHALLGLTRSVAIDY-----APKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQ------ 215 (269)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHH-----TTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHH------
T ss_pred --CChhHHHHHHHHHHHHHHHHHHh-----cCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhc------
Confidence 12679999999999998765321 2379999999999988742110 11222222221
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.....+.+.+|+|++++.++... .....|+++++.+|..
T Consensus 216 ---~p~~r~~~pedvA~~v~~L~s~~---------~~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 216 ---HPMGRIGRPEEVAEVVAFLASDR---------SSFITGACLTVDGGLL 254 (269)
T ss_dssp ---STTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred ---CCCCCCcCHHHHHHHHHHHhCCc---------cCCCcCcEEEECCCcc
Confidence 22345778999999999887631 2246799999998754
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=191.86 Aligned_cols=226 Identities=15% Similarity=0.049 Sum_probs=162.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
.+++++|+|+||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.+++.++++
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLK-VWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 34577899999999999999999999999998 99999865422111 1123468999999999999888776
Q ss_pred ----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+||...... +..+.+..+++|+.|+.++++++.+ .+..++|++||...+.+..
T Consensus 103 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 174 (271)
T 4iin_A 103 QSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNM-------- 174 (271)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT--------
T ss_pred HhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCC--------
Confidence 7899999999754332 3345678899999999998888765 3667999999987643211
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCc
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
+ ...|+.||...|.+++.+..+ + ...++++.+++|+.|..+......+..... +.....
T Consensus 175 ----~----~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~---------~~~~~~ 233 (271)
T 4iin_A 175 ----G----QTNYSASKGGMIAMSKSFAYE-G---ALRNIRFNSVTPGFIETDMNANLKDELKAD---------YVKNIP 233 (271)
T ss_dssp ----T----CHHHHHHHHHHHHHHHHHHHH-H---HTTTEEEEEEEECSBCCC---------------------CGGGCT
T ss_pred ----C----chHhHHHHHHHHHHHHHHHHH-H---HHhCcEEEEEEeCcccCCchhhhcHHHHHH---------HHhcCC
Confidence 1 267999999999998766431 1 136899999999999887543321111111 111223
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+.+.+|+|+++..++... .....|+.+++.+|.
T Consensus 234 ~~~~~~p~dvA~~i~~l~s~~---------~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 234 LNRLGSAKEVAEAVAFLLSDH---------SSYITGETLKVNGGL 269 (271)
T ss_dssp TCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTS
T ss_pred cCCCcCHHHHHHHHHHHhCCC---------cCCCcCCEEEeCCCe
Confidence 346889999999999887631 224679999998875
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=187.56 Aligned_cols=220 Identities=16% Similarity=0.165 Sum_probs=156.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
..+++|+++||||+|+||++++++|+++|++ |++++|+.... ..+.++++|++|.++++++++ ++
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~-------~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i 88 (253)
T 2nm0_A 17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDK-VAITYRSGEPP-------EGFLAVKCDITDTEQVEQAYKEIEETHGPV 88 (253)
T ss_dssp ---CCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSCCC-------TTSEEEECCTTSHHHHHHHHHHHHHHTCSC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHhh-------ccceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3466789999999999999999999999998 99999875421 237889999999999888775 47
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+|+..... .+..+++..+++|+.|+.++++++.+ .+..++|++||...+.+..
T Consensus 89 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------------- 154 (253)
T 2nm0_A 89 EVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSA-------------- 154 (253)
T ss_dssp SEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHH--------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCC--------------
Confidence 9999999975322 13446678899999999999998765 3667999999987643211
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
....|+.||...|.+.+....+ + ...++++++++|+.|.++................. ....+++
T Consensus 155 --~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---------p~~~~~~ 219 (253)
T 2nm0_A 155 --GQANYAASKAGLVGFARSLARE-L---GSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQV---------PLGRYAR 219 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH-H---CSSSEEEEEEEECSBCC---------CHHHHHTTC---------TTCSCBC
T ss_pred --CcHHHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEEeCcCcCcchhhcCHHHHHHHHhcC---------CCCCCcC
Confidence 1257999999999988765421 1 14789999999999987743221111111111111 1234789
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+|+|++++.++... .....|+.+.+.+|..+
T Consensus 220 p~dvA~~i~~l~s~~---------~~~~tG~~i~vdGG~~~ 251 (253)
T 2nm0_A 220 PEEIAATVRFLASDD---------ASYITGAVIPVDGGLGM 251 (253)
T ss_dssp HHHHHHHHHHHHSGG---------GTTCCSCEEEESTTTTC
T ss_pred HHHHHHHHHHHhCcc---------ccCCcCcEEEECCcccc
Confidence 999999999887631 12457889999887543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=191.06 Aligned_cols=229 Identities=16% Similarity=0.133 Sum_probs=167.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
.+++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++ ++
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAE-VLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 477899999999999999999999999998 99999875421110 1113568999999999998887664 68
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|++||+||...... +..+++..+++|+.|+.++.+++.+.- -.++|++||...+.+.+
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------- 147 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHP---------------- 147 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCT----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCC----------------
Confidence 99999999754332 345667889999999999999998752 24899999988643211
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--c----HHHHHHHHHcCCCCeeeCCCCccc
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--H----LPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~----~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
....|+.||...+.+.+....+ + ...|+++.+++|+.|.+|.... . ...+........ ...
T Consensus 148 ~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~---------p~~ 214 (255)
T 4eso_A 148 GMSVYSASKAALVSFASVLAAE-L---LPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNIT---------PMK 214 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHH-T---GGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHS---------TTS
T ss_pred CchHHHHHHHHHHHHHHHHHHH-H---hhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccC---------CCC
Confidence 1267999999999998776532 1 1468999999999999985432 1 112222222222 123
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHH
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE 276 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e 276 (478)
.+.+.+|+|++++.++.. .....|+.+++.+|...++.+
T Consensus 215 r~~~pedvA~~v~~L~s~----------~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 215 RNGTADEVARAVLFLAFE----------ATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp SCBCHHHHHHHHHHHHHT----------CTTCCSCEEEESTTTTTTBCC
T ss_pred CCcCHHHHHHHHHHHcCc----------CcCccCCEEEECCCccccCcC
Confidence 466899999999888762 124679999999987766543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=196.94 Aligned_cols=227 Identities=16% Similarity=0.110 Sum_probs=162.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c-------ccCCCeEEEEecCCCHHHHHHHhc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L-------LINHGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~-------~~~~~v~~v~gDl~d~~~l~~~l~ 77 (478)
..+++|+|+||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|.+++.++++
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 92 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 92 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence 3567899999999999999999999999998 99999875421100 0 023568999999999999988876
Q ss_pred -------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCC
Q 011770 78 -------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 -------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++.+. +..++|++||.. +.+.
T Consensus 93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~------ 165 (303)
T 1yxm_A 93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGF------ 165 (303)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCC------
Confidence 489999999964322 123456778899999999999998763 346899999986 2221
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC-CCcH---HHHHHHHHcCCCCe
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE-ERHL---PRIVSLAKLGLVPF 218 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~-~~~~---~~~i~~~~~g~~~~ 218 (478)
|. ...|+.+|...+.+.+....+ + ...|++++++||+.|+|+.. .... +.....+...
T Consensus 166 -------~~---~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---- 227 (303)
T 1yxm_A 166 -------PL---AVHSGAARAGVYNLTKSLALE-W---ACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK---- 227 (303)
T ss_dssp -------TT---CHHHHHHHHHHHHHHHHHHHH-T---GGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG----
T ss_pred -------Cc---chhhHHHHHHHHHHHHHHHHH-h---cccCeEEEEEecCCcccchhhhhccccchHHHHHHHhc----
Confidence 11 257999999999988766532 1 13589999999999999942 1110 1111111110
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.....+.+++|+|++++.++... .....|+.+++.+|...+
T Consensus 228 -----~p~~~~~~~~dvA~~i~~l~~~~---------~~~~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 228 -----IPAKRIGVPEEVSSVVCFLLSPA---------ASFITGQSVDVDGGRSLY 268 (303)
T ss_dssp -----STTSSCBCTHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGC
T ss_pred -----CcccCCCCHHHHHHHHHHHhCcc---------cccCCCcEEEECCCeecc
Confidence 11235789999999999887521 123578999999887654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=192.39 Aligned_cols=226 Identities=20% Similarity=0.145 Sum_probs=164.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++|+++||||+|+||++++++|.++|++ |++++|+....... .....++.++++|++|.++++++++ ++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGAS-LVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRL 81 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 467889999999999999999999999998 99999875421110 1112468899999999999888775 47
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|+|||+||...... +..+.+..+++|+.|+.++++++.+.- ..++|++||...+ +...
T Consensus 82 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~~--------------- 145 (263)
T 2a4k_A 82 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAFG--------------- 145 (263)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHHH---------------
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCCC---------------
Confidence 99999999653321 234557788999999999999998763 3599999998874 2111
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
...|+.||...+.+.+....+ + ...|+++++++|+.|+++......+.....+....+ ...+.+.+
T Consensus 146 -~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~~~~~p~ 211 (263)
T 2a4k_A 146 -LAHYAAGKLGVVGLARTLALE-L---ARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASP---------LGRAGRPE 211 (263)
T ss_dssp -HHHHHHCSSHHHHHHHHHHHH-H---TTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTST---------TCSCBCHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEEeCcCcCchhhhcCHHHHHHHHhcCC---------CCCCcCHH
Confidence 257999999988887665421 1 146899999999999998644322333233322221 12477899
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
|+|++++.++... .....|+.+++.+|....
T Consensus 212 dvA~~v~~l~s~~---------~~~~tG~~i~vdgG~~~~ 242 (263)
T 2a4k_A 212 EVAQAALFLLSEE---------SAYITGQALYVDGGRSIV 242 (263)
T ss_dssp HHHHHHHHHHSGG---------GTTCCSCEEEESTTTTTC
T ss_pred HHHHHHHHHhCcc---------ccCCcCCEEEECCCcccc
Confidence 9999999887621 124578999998886544
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=195.23 Aligned_cols=230 Identities=17% Similarity=0.156 Sum_probs=167.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.++++|++|||||+|+||++++++|+++|++ |++++|+....... ......+.++.+|++|.++++++++
T Consensus 4 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (280)
T 3tox_A 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAK-VVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRR 82 (280)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3477899999999999999999999999998 99999875421110 1123568899999999999888776
Q ss_pred --CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 --GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 --~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+||.... ..+..+++..+++|+.|+.++.+++.+. +..++|++||...+..+
T Consensus 83 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 152 (280)
T 3tox_A 83 FGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAG---------- 152 (280)
T ss_dssp HSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBC----------
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCC----------
Confidence 78999999996422 1234456788999999999999988653 45699999998763111
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc----HHHHHHHHHcCCCCeeeCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH----LPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~----~~~~i~~~~~g~~~~~~g~ 222 (478)
..+ ...|+.||...|.+++....+ + +..|+++.+++|+.|.+|..... .+.....+....
T Consensus 153 -~~~----~~~Y~asKaa~~~l~~~la~e-~---~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------- 216 (280)
T 3tox_A 153 -FAG----VAPYAASKAGLIGLVQALAVE-L---GARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLH------- 216 (280)
T ss_dssp -CTT----CHHHHHHHHHHHHHHHHHHHH-H---HTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTS-------
T ss_pred -CCC----chhHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccC-------
Confidence 111 267999999999998766431 1 14689999999999999864321 122333333322
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
....+.+.+|+|++++.++... .....|+++++.+|..++.
T Consensus 217 --p~~r~~~pedvA~~v~~L~s~~---------a~~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 217 --ALKRIARPEEIAEAALYLASDG---------ASFVTGAALLADGGASVTK 257 (280)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGCC
T ss_pred --ccCCCcCHHHHHHHHHHHhCcc---------ccCCcCcEEEECCCccccc
Confidence 2235778999999999888631 2246799999999876653
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-22 Score=191.88 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=163.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||+|+||++++++|+++|++ |++.+++....... .....++.++.+|++|.++++++++
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMA-VAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF 101 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999998 99998654422111 1123568999999999999888776
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+||...... +..+.+..+++|+.|+.++++++.. .+..++|++||...+.+..
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 170 (269)
T 3gk3_A 102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAF----------- 170 (269)
T ss_dssp SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----------
T ss_pred CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCC-----------
Confidence 7899999999754332 3445678899999999999998764 4567999999987643211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
+ ...|+.||...+.+++....+ + ...|+++.+++|+.|..+......+... ... .........
T Consensus 171 -~----~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~----~~~----~~~~~~~~~ 233 (269)
T 3gk3_A 171 -G----QANYASAKAGIHGFTKTLALE-T---AKRGITVNTVSPGYLATAMVEAVPQDVL----EAK----ILPQIPVGR 233 (269)
T ss_dssp -T----BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCTTTTC-----------CC----SGGGCTTSS
T ss_pred -C----cchHHHHHHHHHHHHHHHHHH-h---hhcCCEEEEEecCcccchhhhhhchhHH----HHH----hhhcCCcCC
Confidence 1 267999999999888765431 1 1368999999999999886543222111 100 111123346
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
+.+.+|+|++++.++.. ......|+++++.+|..++
T Consensus 234 ~~~p~dvA~~v~~L~s~---------~~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 234 LGRPDEVAALIAFLCSD---------DAGFVTGADLAINGGMHMS 269 (269)
T ss_dssp CBCHHHHHHHHHHHTST---------TCTTCCSCEEEESTTSCCC
T ss_pred ccCHHHHHHHHHHHhCC---------CcCCeeCcEEEECCCEeCc
Confidence 77899999999988752 1234679999999887653
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=188.26 Aligned_cols=195 Identities=17% Similarity=0.169 Sum_probs=147.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-------ceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-------YQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-------~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
+|+|+||||+|+||++++++|+++|+ + |++++|+....... . ....++.++.+|++|.++++++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPV-LVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI 80 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEE-EEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceE-EEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence 57899999999999999999999999 7 99999864321100 0 113468899999999999988876
Q ss_pred -----CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCC
Q 011770 78 -----GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++.+ .+.+++|++||..++.+.
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-------- 152 (244)
T 2bd0_A 81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF-------- 152 (244)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCC--------
Confidence 699999999975332 13345678889999999999999854 467899999998874211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
.+ ...|+.||...|.+++....+ + ...+++++++||+.|++|...... . . .
T Consensus 153 ----~~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~----------~------~-~ 203 (244)
T 2bd0_A 153 ----RH----SSIYCMSKFGQRGLVETMRLY-A---RKCNVRITDVQPGAVYTPMWGKVD----------D------E-M 203 (244)
T ss_dssp ----TT----CHHHHHHHHHHHHHHHHHHHH-H---TTTTEEEEEEEECCBCSTTTCCCC----------S------T-T
T ss_pred ----CC----CchhHHHHHHHHHHHHHHHHH-h---hccCcEEEEEECCCccchhhhhcc----------c------c-c
Confidence 11 267999999999988654321 1 147899999999999998643210 0 0 0
Q ss_pred ccccceeHHHHHHHHHHHHh
Q 011770 225 VKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~ 244 (478)
...+++.+|+|++++.++.
T Consensus 204 -~~~~~~~~dva~~~~~l~~ 222 (244)
T 2bd0_A 204 -QALMMMPEDIAAPVVQAYL 222 (244)
T ss_dssp -GGGSBCHHHHHHHHHHHHT
T ss_pred -cccCCCHHHHHHHHHHHHh
Confidence 2368999999999999886
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=191.38 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=163.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
..++|+||||||+|+||++++++|+++|++ |++.+++....... .....++.++++|++|.++++++++
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFR-VVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE 88 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEE-EEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 457789999999999999999999999998 99988554432111 1123568899999999999888776
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++.+++. +.+..++|++||...+.+..
T Consensus 89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 158 (256)
T 3ezl_A 89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQF---------- 158 (256)
T ss_dssp TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCS----------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCC----------
Confidence 689999999975432 2344567889999999888877764 45667999999987643211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
+ ...|+.||...|.+++....+ + ...++++.+++|+.|.++......+.....+....+. .
T Consensus 159 --~----~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~ 219 (256)
T 3ezl_A 159 --G----QTNYSTAKAGIHGFTMSLAQE-V---ATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPV---------R 219 (256)
T ss_dssp --C----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHHSTT---------S
T ss_pred --C----CcccHHHHHHHHHHHHHHHHH-H---HHhCCEEEEEEECcccCccccccCHHHHHHHHhcCCC---------C
Confidence 1 267999999999888765431 1 1368999999999998875443334444444433322 3
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.+.+.+|+|++++.++... .....|+++++.+|..+
T Consensus 220 ~~~~~~dva~~~~~l~s~~---------~~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 220 RLGSPDEIGSIVAWLASEE---------SGFSTGADFSLNGGLHM 255 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTSCC
T ss_pred CCcCHHHHHHHHHHHhCCc---------ccCCcCcEEEECCCEeC
Confidence 4678999999999887521 23467999999887654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-22 Score=190.95 Aligned_cols=226 Identities=18% Similarity=0.189 Sum_probs=161.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
..+++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.++++++++
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 95 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999999998 99999875421100 0113468889999999999888776
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccce-eeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNV-VFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v-~~g~~~~~~~~E~ 145 (478)
++|+|||+||...... +..+.+..+++|+.|+.++++++.+ .+.+++|++||..+ ..+
T Consensus 96 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---------- 165 (267)
T 1vl8_A 96 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVT---------- 165 (267)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCC----------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccC----------
Confidence 6899999999754321 2345567889999999999988854 45679999999873 111
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g 223 (478)
. | ....|+.||...|.+++....+ + ...|+++++++|+.+.++...... +..........+
T Consensus 166 --~-~---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------- 228 (267)
T 1vl8_A 166 --M-P---NISAYAASKGGVASLTKALAKE-W---GRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIP------- 228 (267)
T ss_dssp --S-S---SCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCT-------
T ss_pred --C-C---CChhHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEeccCccccccccccChHHHHHHHhhCC-------
Confidence 0 1 1267999999999998766431 1 136899999999999887532211 122222222211
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
...+.+.+|+|++++.++... .....|+.+++.+|..
T Consensus 229 --~~~~~~p~dvA~~v~~l~s~~---------~~~itG~~i~vdGG~~ 265 (267)
T 1vl8_A 229 --LGRTGVPEDLKGVAVFLASEE---------AKYVTGQIIFVDGGWT 265 (267)
T ss_dssp --TSSCBCGGGGHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred --CCCCcCHHHHHHHHHHHcCcc---------ccCCcCCeEEECCCCC
Confidence 124778999999999887521 1245788999987743
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=195.83 Aligned_cols=229 Identities=15% Similarity=0.103 Sum_probs=164.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
.++++|++|||||+|+||++++++|+++|++ |++.+|+....... .....++.++++|++|.++++++++
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999 99998763311000 1123568899999999998887775
Q ss_pred ----CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHcCCC--eEEEEeccceeeCCccccCCCCCC
Q 011770 78 ----GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEFGIQ--RLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~~v~--r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+|+..... .+..+++..+++|+.|+.++++++.+.-.+ ++|++||...+.+..
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~--------- 194 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSP--------- 194 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCT---------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCC---------
Confidence 689999999964321 134566788999999999999999887544 999999988743211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
....|+.||...|.+.+....+ + ...|+++.+++|+.|+++..... .........+......
T Consensus 195 -------~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~t~~~~~~-------~~~~~~~~~~~~~~p~ 256 (294)
T 3r3s_A 195 -------HLLDYAATKAAILNYSRGLAKQ-V---AEKGIRVNIVAPGPIWTALQISG-------GQTQDKIPQFGQQTPM 256 (294)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCSHHHHTT-------TSCGGGSTTTTTTSTT
T ss_pred -------CchHHHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEecCcCcccccccc-------CCCHHHHHHHHhcCCC
Confidence 1267999999999998766432 1 13689999999999998731000 0000000111222334
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
..+...+|+|++++.++... .....|++++|.+|..+
T Consensus 257 ~r~~~p~dvA~~v~~L~s~~---------~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 257 KRAGQPAELAPVYVYLASQE---------SSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp SSCBCGGGGHHHHHHHHSGG---------GTTCCSCEEEESTTCCC
T ss_pred CCCcCHHHHHHHHHHHhCcc---------ccCCCCCEEEECCCccC
Confidence 56788999999999887521 22467999999988754
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-22 Score=191.18 Aligned_cols=228 Identities=16% Similarity=0.139 Sum_probs=165.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
++++++|++|||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 27 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 27 LFDLSGKRALITGASTGIGKKVALAYAEAGAQ-VAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp GGCCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 44678899999999999999999999999998 99999875432110 1123468899999999999988876
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+||...... +..+.+..+++|+.|+.++++++.+. + -.++|++||...+.+..+
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~------- 178 (276)
T 3r1i_A 106 ELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIP------- 178 (276)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCS-------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCC-------
Confidence 7899999999754322 33456778899999999999988754 3 258999999876322110
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCc
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
.....|+.||...|.+++....+ + ...++++.+++|+.|..+..... +..........+
T Consensus 179 -------~~~~~Y~asKaa~~~l~~~la~e-~---~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~p--------- 237 (276)
T 3r1i_A 179 -------QQVSHYCTSKAAVVHLTKAMAVE-L---APHQIRVNSVSPGYIRTELVEPL-ADYHALWEPKIP--------- 237 (276)
T ss_dssp -------SCCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCSTTTGGG-GGGHHHHGGGST---------
T ss_pred -------CCcchHHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEeeCCCcCCccccc-hHHHHHHHhcCC---------
Confidence 01267999999999998776532 1 13689999999999998865432 222222222221
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
...+...+|+|++++.++... .....|+++++.+|..
T Consensus 238 ~~r~~~pedvA~~v~fL~s~~---------~~~itG~~i~vdGG~~ 274 (276)
T 3r1i_A 238 LGRMGRPEELTGLYLYLASAA---------SSYMTGSDIVIDGGYT 274 (276)
T ss_dssp TSSCBCGGGSHHHHHHHHSGG---------GTTCCSCEEEESTTTT
T ss_pred CCCCcCHHHHHHHHHHHcCcc---------ccCccCcEEEECcCcc
Confidence 234678899999999887631 2246799999988753
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=189.78 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=160.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHH-cCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-----CcCEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVR-RGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-----GVDCV 82 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-----~~D~V 82 (478)
.+||++|||||+|+||++++++|++ .|+. |++.+|+... ....+.++++|++|.++++++++ ++|++
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~-v~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~l 74 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHT-VINIDIQQSF------SAENLKFIKADLTKQQDITNVLDIIKNVSFDGI 74 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEE-EEEEESSCCC------CCTTEEEEECCTTCHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcE-EEEecccccc------ccccceEEecCcCCHHHHHHHHHHHHhCCCCEE
Confidence 3568999999999999999999999 6877 9999886541 23457899999999999998886 78999
Q ss_pred EEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcCC--CeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 83 FHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 83 iHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v--~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
||+||..... .+..+.+..+++|+.|+.++++++.+.-. .++|++||...+.+.+ + ..
T Consensus 75 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------------~----~~ 138 (244)
T 4e4y_A 75 FLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKP------------N----SF 138 (244)
T ss_dssp EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCT------------T----BH
T ss_pred EECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCC------------C----Cc
Confidence 9999975332 23456678899999999999999987633 3899999987742211 1 25
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHH-----------HHHHHHcCCCCeeeCCCCc
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPR-----------IVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~-----------~i~~~~~g~~~~~~g~g~~ 225 (478)
.|+.||...|.+.+....+ + ...|+++.+++|+.|.+|........ ........ ..
T Consensus 139 ~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p 205 (244)
T 4e4y_A 139 AYTLSKGAIAQMTKSLALD-L---AKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKE---------FP 205 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTT---------ST
T ss_pred hhHHHHHHHHHHHHHHHHH-H---HHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhc---------CC
Confidence 7999999999998766531 1 14689999999999988743221111 11122221 22
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
...+.+.+|+|++++.++... .....|+.+++.+|..
T Consensus 206 ~~r~~~p~dvA~~v~~l~s~~---------~~~itG~~i~vdGG~~ 242 (244)
T 4e4y_A 206 LNRIAQPQEIAELVIFLLSDK---------SKFMTGGLIPIDGGYT 242 (244)
T ss_dssp TSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhcCc---------cccccCCeEeECCCcc
Confidence 346788999999999888631 2246799999988753
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-22 Score=190.34 Aligned_cols=231 Identities=18% Similarity=0.169 Sum_probs=158.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+|+++||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|.++++++++ ++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 578999999999999999999999998 99999875421100 0 113468899999999999988876 79
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|+|||+||...... +..+++..+++|+.|+.++++++.+. + ..++|++||...+++.+
T Consensus 81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 147 (256)
T 1geg_A 81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNP------------- 147 (256)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC-------------
Confidence 99999999654321 23456778999999999988887653 4 57999999987643211
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHH--cCCCCeeeCCCCcccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAK--LGLVPFKIGEPSVKTD 228 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~--~g~~~~~~g~g~~~~~ 228 (478)
....|+.||...|.+.+....+ + ...|+++++++|+.|+++........+..... .......+........
T Consensus 148 ---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 220 (256)
T 1geg_A 148 ---ELAVYSSSKFAVRGLTQTAARD-L---APLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGR 220 (256)
T ss_dssp ---TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCS
T ss_pred ---CchhHHHHHHHHHHHHHHHHHH-H---HHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCCCCC
Confidence 1257999999999988766431 1 13689999999999988742111000000000 0000000001111235
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+.+.+|+|++++.++... .....|+.+++.+|..
T Consensus 221 ~~~p~dvA~~v~~l~s~~---------~~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 221 LSEPEDVAACVSYLASPD---------SDYMTGQSLLIDGGMV 254 (256)
T ss_dssp CBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESSSSS
T ss_pred CcCHHHHHHHHHHHhCcc---------ccCCCCCEEEeCCCcc
Confidence 789999999999887521 1235789999988754
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-22 Score=189.66 Aligned_cols=223 Identities=16% Similarity=0.136 Sum_probs=160.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC--cccc--c--ccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS--PWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~--~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+|+++||||+|+||++++++|+++|++ |++++|+... .... . ....++.++++|++|.++++++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFD-IAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999998 9999987542 1100 0 113468899999999999888776
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CC-CeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GI-QRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v-~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+||..... .+..+++..+++|+.|+.++++++.+. +. .++|++||...+.+.+
T Consensus 81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 149 (258)
T 3a28_C 81 GFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFP----------- 149 (258)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCC-----------
Confidence 789999999975432 133456788999999999999998764 66 7999999987643211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-----------HHHHHHHcCCCC
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-----------RIVSLAKLGLVP 217 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-----------~~i~~~~~g~~~ 217 (478)
+ ...|+.||...|.+.+.+..+ + ...++++++++|+.|.++....... .....+...
T Consensus 150 -~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 217 (258)
T 3a28_C 150 -I----LSAYSTTKFAVRGLTQAAAQE-L---APKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSS--- 217 (258)
T ss_dssp -T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTT---
T ss_pred -C----chhHHHHHHHHHHHHHHHHHH-H---HhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhc---
Confidence 1 267999999999988766431 1 1368999999999997763211010 011111111
Q ss_pred eeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 218 FKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 218 ~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.....+.+.+|+|++++.++... .....|+.+++.+|..+
T Consensus 218 ------~p~~r~~~p~dvA~~v~~l~s~~---------~~~~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 218 ------IALGRPSVPEDVAGLVSFLASEN---------SNYVTGQVMLVDGGMLY 257 (258)
T ss_dssp ------CTTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESSSSCC
T ss_pred ------CCCCCccCHHHHHHHHHHHhCcc---------cCCCCCCEEEECCCEec
Confidence 11234789999999999887521 12467899999887644
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=190.55 Aligned_cols=225 Identities=16% Similarity=0.142 Sum_probs=162.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEE-ecCCCCccc--c--cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF-DLRTNSPWS--H--LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l-~r~~~~~~~--~--~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++|++|||||+|+||++++++|+++|++ |++. +|+...... . .....++.++++|++|.++++++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYN-IVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999998 8887 554321110 0 1123468999999999999888775
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|++||+||..... .+..+++..+++|+.|+.++++++.+ .+..++|++||...+.+..
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~------------ 149 (258)
T 3oid_A 82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLE------------ 149 (258)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCT------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCC------------
Confidence 569999999964332 23345677899999999999999854 4556999999987642211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
+ ...|+.||...|.+++.+..+ + +..++++.+++|+.|.++..... .+..........+ ..
T Consensus 150 ~----~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p---------~~ 212 (258)
T 3oid_A 150 N----YTTVGVSKAALEALTRYLAVE-L---SPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTP---------AG 212 (258)
T ss_dssp T----CHHHHHHHHHHHHHHHHHHHH-T---GGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCT---------TS
T ss_pred C----cHHHHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCC---------CC
Confidence 1 267999999999999876532 1 14689999999999998854322 1223333333222 23
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.+.+.+|+|++++.++.. ......|+++++.+|....
T Consensus 213 r~~~~~dva~~v~~L~s~---------~~~~itG~~i~vdGG~~~~ 249 (258)
T 3oid_A 213 RMVEIKDMVDTVEFLVSS---------KADMIRGQTIIVDGGRSLL 249 (258)
T ss_dssp SCBCHHHHHHHHHHHTSS---------TTTTCCSCEEEESTTGGGB
T ss_pred CCcCHHHHHHHHHHHhCc---------ccCCccCCEEEECCCccCC
Confidence 577899999999988752 1234679999999886544
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-22 Score=191.99 Aligned_cols=235 Identities=17% Similarity=0.123 Sum_probs=162.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
|+++++|++|||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.++++++++
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAADGVT-VGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 44567789999999999999999999999998 99999875421110 1123468899999999999888776
Q ss_pred ---CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+||.... ..+..+++..+++|+.|+.++++++ ++.+..++|++||...+...
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~--------- 172 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF--------- 172 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC---------
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC---------
Confidence 68999999997432 1234456788999999999999998 45566799999998653110
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCc
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
+. | ....|+.||...|.+++....+ + +..|+++.+++|+.|..+......... . ...............
T Consensus 173 -~~-~---~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~-~-~~~~~~~~~~~~~~p 241 (283)
T 3v8b_A 173 -TT-P---GATAYTATKAAQVAIVQQLALE-L---GKHHIRVNAVCPGAIETNISDNTKLRH-E-EETAIPVEWPKGQVP 241 (283)
T ss_dssp -CS-T---TCHHHHHHHHHHHHHHHHHHHH-T---TTTTEEEEEEEECSBSSCTTCCTTBCC-H-HHHSCCCBCTTCSCG
T ss_pred -CC-C---CchHHHHHHHHHHHHHHHHHHH-h---CccCcEEEEEEeCCCcCCccccccccc-c-hhhhhhhhhhhhcCc
Confidence 00 1 1267999999999999876532 1 247899999999999988644311000 0 000111111111111
Q ss_pred c--ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 K--TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~--~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
. ..+...+|+|++++.++.. ......|+++++.+|.
T Consensus 242 ~~~~r~~~pedvA~~v~fL~s~---------~a~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 242 ITDGQPGRSEDVAELIRFLVSE---------RARHVTGSPVWIDGGQ 279 (283)
T ss_dssp GGTTCCBCHHHHHHHHHHHTSG---------GGTTCCSCEEEESTTH
T ss_pred cccCCCCCHHHHHHHHHHHcCc---------cccCCcCCEEEECcCc
Confidence 1 4567899999999988752 1224679999998774
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=198.35 Aligned_cols=237 Identities=12% Similarity=0.090 Sum_probs=166.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--cCC---CeEEEEecCCCHHHHHHHhc--
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--INH---GVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~~~---~v~~v~gDl~d~~~l~~~l~-- 77 (478)
+++++|+++||||+|+||++++++|+++|++ |++++|+....... .. ... ++.++.+|++|.++++++++
T Consensus 22 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 100 (297)
T 1xhl_A 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT 100 (297)
T ss_dssp -CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 4467799999999999999999999999998 99999875421110 00 112 68899999999999888776
Q ss_pred -----CcCEEEEcccCCCCch------hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCC
Q 011770 78 -----GVDCVFHVASYGMSGK------EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~~------~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|+|||+||...... +..+++..+++|+.|+.++++++.+. + .++|++||...+.+.
T Consensus 101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~------ 173 (297)
T 1xhl_A 101 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA------ 173 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC------
T ss_pred HHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC------
Confidence 7899999999653321 33456788999999999999988764 4 699999998763221
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---H------HHHHHHHHc
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---L------PRIVSLAKL 213 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~------~~~i~~~~~ 213 (478)
.| ....|+.||...|.+.+....+ + ...|+++++++|+.|+++..... - .........
T Consensus 174 ------~~---~~~~Y~asKaa~~~l~~~la~e-l---~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
T 1xhl_A 174 ------HS---GYPYYACAKAALDQYTRCTAID-L---IQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKE 240 (297)
T ss_dssp ------CT---TSHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT
T ss_pred ------CC---CcchHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHh
Confidence 01 1257999999999998766421 1 13689999999999998742211 0 011111111
Q ss_pred CCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHH
Q 011770 214 GLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPL 281 (478)
Q Consensus 214 g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i 281 (478)
. .....+...+|+|++++.++.... .....|+.+++.+|......+..+.+
T Consensus 241 ~---------~p~~r~~~pedvA~~v~~l~s~~~--------~~~itG~~i~vdGG~~~~~~~~~~~~ 291 (297)
T 1xhl_A 241 C---------IPVGHCGKPEEIANIIVFLADRNL--------SSYIIGQSIVADGGSTLVMGMQTHDL 291 (297)
T ss_dssp T---------CTTSSCBCHHHHHHHHHHHHCHHH--------HTTCCSCEEEESTTGGGCCGGGGSCH
T ss_pred c---------CCCCCCcCHHHHHHHHHHHhCCcc--------cCCccCcEEEECCCccccccccccch
Confidence 1 122357899999999998875210 11357899999988776655543333
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-22 Score=201.81 Aligned_cols=242 Identities=17% Similarity=0.167 Sum_probs=173.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC---------CCccc---c--cccCCCeEEEEecCCCHHHH
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT---------NSPWS---H--LLINHGVHCIQGDVVSKIDV 72 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~---------~~~~~---~--~~~~~~v~~v~gDl~d~~~l 72 (478)
..+++|++|||||+|+||++++++|+++|++ |++++|+. ..... . ......+.++.+|++|.+++
T Consensus 23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 101 (322)
T 3qlj_A 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQA 101 (322)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 3467889999999999999999999999998 99998862 11000 0 01134578899999999998
Q ss_pred HHHhc-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcCC----------CeEEEEeccc
Q 011770 73 EKAAR-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFGI----------QRLVYVSTYN 131 (478)
Q Consensus 73 ~~~l~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v----------~r~V~~SS~~ 131 (478)
.++++ ++|++||+||..... .+..+++..+++|+.|+.++++++...-. .++|++||..
T Consensus 102 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 181 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181 (322)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence 88776 789999999975432 23446678899999999999998865421 4899999987
Q ss_pred eeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHH
Q 011770 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLA 211 (478)
Q Consensus 132 v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~ 211 (478)
.+.+... ...|+.||...|.+++.+..+ + +..|+++.+++|+ +..+.........
T Consensus 182 ~~~~~~~----------------~~~Y~asKaal~~l~~~la~e-~---~~~gI~vn~v~PG-~~t~~~~~~~~~~---- 236 (322)
T 3qlj_A 182 GLQGSVG----------------QGNYSAAKAGIATLTLVGAAE-M---GRYGVTVNAIAPS-ARTRMTETVFAEM---- 236 (322)
T ss_dssp HHHCBTT----------------CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEEC-TTSCCSCCSCCC-----
T ss_pred HccCCCC----------------CccHHHHHHHHHHHHHHHHHH-h---cccCcEEEEecCC-CCCccchhhhhhh----
Confidence 7433211 257999999999998766532 1 1368999999999 7665433211110
Q ss_pred HcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC-----------------CH
Q 011770 212 KLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI-----------------NT 274 (478)
Q Consensus 212 ~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~-----------------s~ 274 (478)
...+.....++..+|+|++++.++... .....|+.+++.+|... +.
T Consensus 237 --------~~~~~~~~~~~~pedva~~v~~L~s~~---------~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~ 299 (322)
T 3qlj_A 237 --------MATQDQDFDAMAPENVSPLVVWLGSAE---------ARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDP 299 (322)
T ss_dssp ---------------CCTTCGGGTHHHHHHHTSGG---------GGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCG
T ss_pred --------hhccccccCCCCHHHHHHHHHHHhCcc---------ccCCCCCEEEECCCccccCCCcccccccCccCCCCH
Confidence 011122345678999999998887521 22357999999888654 77
Q ss_pred HHHHHHHHHhcCCCCCc
Q 011770 275 FEFIGPLLKTLDYDLPK 291 (478)
Q Consensus 275 ~e~~~~i~~~lg~~~~~ 291 (478)
.|+++.+.+.+|.+.+.
T Consensus 300 ~el~~~~~~~~~~~~~~ 316 (322)
T 3qlj_A 300 AELGPVVADLLGKARPP 316 (322)
T ss_dssp GGHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhccCCC
Confidence 89999999988865443
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=187.16 Aligned_cols=218 Identities=17% Similarity=0.207 Sum_probs=156.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~Vi 83 (478)
+|+++||||+|+||++++++|+++|++ |++++|+.... .... ++.++++|++| ++++++++ ++|++|
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~-V~~~~r~~~~~--~~~~--~~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv 75 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYR-VAIASRNPEEA--AQSL--GAVPLPTDLEK-DDPKGLVKRALEALGGLHVLV 75 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHHH--HHHH--TCEEEECCTTT-SCHHHHHHHHHHHHTSCCEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHH--HHhh--CcEEEecCCch-HHHHHHHHHHHHHcCCCCEEE
Confidence 579999999999999999999999998 99999876421 1111 37889999999 76665543 789999
Q ss_pred EcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 84 HVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 84 HlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
|+|+..... .+..+++..+++|+.|+.++.+++. +.+.+++|++||...+.+.. . | ..
T Consensus 76 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------~-~---~~ 141 (239)
T 2ekp_A 76 HAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG----------P-V---PI 141 (239)
T ss_dssp ECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------T-S---CC
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC----------C-C---CC
Confidence 999965322 1344667889999999999999885 45678999999988743210 0 1 12
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
..|+.||...|.+.+.+..+ + ...|++++++||+.++++...... +.....+.... ....+.+.+
T Consensus 142 ~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------p~~~~~~~~ 208 (239)
T 2ekp_A 142 PAYTTAKTALLGLTRALAKE-W---ARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARI---------PMGRWARPE 208 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTC---------TTSSCBCHH
T ss_pred ccHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcC---------CCCCCcCHH
Confidence 67999999999988766431 1 135899999999999988532110 22222222211 123478899
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
|+|++++.++... .....|+.+++.+|.
T Consensus 209 dvA~~~~~l~s~~---------~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 209 EIARVAAVLCGDE---------AEYLTGQAVAVDGGF 236 (239)
T ss_dssp HHHHHHHHHTSGG---------GTTCCSCEEEESTTT
T ss_pred HHHHHHHHHcCch---------hcCCCCCEEEECCCc
Confidence 9999999887521 123578899998774
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=187.19 Aligned_cols=194 Identities=17% Similarity=0.091 Sum_probs=136.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDCV 82 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~V 82 (478)
++|+|+||||+|+||++++++|+++|++ |++++|+............++.++.+|++|.++++++++ ++|+|
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 82 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYR-VGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSAL 82 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4578999999999999999999999998 999998654211111112368899999999998887765 68999
Q ss_pred EEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 83 FHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 83 iHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
||+||...... ...+.+..+++|+.|+.++++++ ++.+.+++|++||...+.+. .+
T Consensus 83 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~---- 146 (234)
T 2ehd_A 83 VNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPF------------KG---- 146 (234)
T ss_dssp EECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCC------------TT----
T ss_pred EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCC------------CC----
Confidence 99999653321 33456778899999998666554 45677899999998763211 11
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
...|+.||...|.+++.+..+ + ...|++++++||+.+.++.... .. . . ..+++.+|
T Consensus 147 ~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~--------~~-~----------~-~~~~~~~d 202 (234)
T 2ehd_A 147 GAAYNASKFGLLGLAGAAMLD-L---REANVRVVNVLPGSVDTGFAGN--------TP-G----------Q-AWKLKPED 202 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEECC------------------------------------CCHHH
T ss_pred CchhhHHHHHHHHHHHHHHHH-H---hhcCcEEEEEEeCCCcCCcccc--------cc-c----------c-cCCCCHHH
Confidence 267999999999887665421 1 1368999999999997763211 00 0 0 11578999
Q ss_pred HHHHHHHHHh
Q 011770 235 LVLALILASM 244 (478)
Q Consensus 235 va~a~~~a~~ 244 (478)
+|++++.++.
T Consensus 203 vA~~~~~l~~ 212 (234)
T 2ehd_A 203 VAQAVLFALE 212 (234)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999887
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-22 Score=190.43 Aligned_cols=213 Identities=17% Similarity=0.135 Sum_probs=153.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc----cCCCeEEEEecCCCH-HHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL----INHGVHCIQGDVVSK-IDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~----~~~~v~~v~gDl~d~-~~l~~~l~------ 77 (478)
+++|+++||||+|+||++++++|+++|++.|++++|+......... ...+++++.+|++|. ++++++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999548888887532110100 124688999999998 88777665
Q ss_pred -CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-------CCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-------IQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-------v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+||.. ...+.+..+++|+.|+.++++++.+.- ..++|++||...+.+.
T Consensus 83 g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------- 145 (254)
T 1sby_A 83 KTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI------------- 145 (254)
T ss_dssp SCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-------------
T ss_pred CCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC-------------
Confidence 789999999964 234567889999999999999997642 3479999998874221
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---H---HHHHHHHHcCCCCeeeCCC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---L---PRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~---~~~i~~~~~g~~~~~~g~g 223 (478)
| ....|+.||...|.+++.+..+ +. ..++++++++|+.|.++..... . +.+ .....
T Consensus 146 ~---~~~~Y~~sK~a~~~~~~~la~~-~~---~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~~~~~---------- 207 (254)
T 1sby_A 146 H---QVPVYSASKAAVVSFTNSLAKL-AP---ITGVTAYSINPGITRTPLVHTFNSWLDVEPRV-AELLL---------- 207 (254)
T ss_dssp T---TSHHHHHHHHHHHHHHHHHHHH-HH---HHSEEEEEEEECSEESHHHHSCCCGGGSCTTH-HHHHT----------
T ss_pred C---CchHHHHHHHHHHHHHHHHHHH-hc---cCCeEEEEEecCCccCccccccchhhhhhHHH-HHHHh----------
Confidence 1 1257999999999999876531 10 2689999999999998732110 0 000 11111
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+.+++|+|++++.+++. ...|+.|++.+|.
T Consensus 208 --~~~~~~~~dvA~~i~~~~~~------------~~~G~~~~v~gG~ 240 (254)
T 1sby_A 208 --SHPTQTSEQCGQNFVKAIEA------------NKNGAIWKLDLGT 240 (254)
T ss_dssp --TSCCEEHHHHHHHHHHHHHH------------CCTTCEEEEETTE
T ss_pred --cCCCCCHHHHHHHHHHHHHc------------CCCCCEEEEeCCc
Confidence 11334899999999988862 3468899998873
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=195.63 Aligned_cols=227 Identities=12% Similarity=0.104 Sum_probs=161.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--cCC---CeEEEEecCCCHHHHHHHhc---
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--INH---GVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~~~---~v~~v~gDl~d~~~l~~~l~--- 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... .. ... ++.++++|++|.++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 81 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH
Confidence 467889999999999999999999999998 99999875421110 00 112 68899999999999888775
Q ss_pred ----CcCEEEEcccCCCCch--------hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccC
Q 011770 78 ----GVDCVFHVASYGMSGK--------EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~--------~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~ 141 (478)
++|+|||+||...... +..+++..+++|+.|+.++++++.+. + .++|++||...+.+.
T Consensus 82 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~----- 155 (280)
T 1xkq_A 82 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA----- 155 (280)
T ss_dssp HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC-----
T ss_pred HhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC-----
Confidence 6899999999653321 23456788999999999999998753 4 799999998764221
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---H------HHHHHHHH
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---L------PRIVSLAK 212 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~------~~~i~~~~ 212 (478)
.| ....|+.||...|.+.+....+ + ...|+++++++|+.|++|..... - ........
T Consensus 156 -------~~---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 221 (280)
T 1xkq_A 156 -------QP---DFLYYAIAKAALDQYTRSTAID-L---AKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHK 221 (280)
T ss_dssp -------CC---SSHHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred -------CC---cccHHHHHHHHHHHHHHHHHHH-h---ccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHH
Confidence 01 1267999999999998766421 1 14689999999999999842211 0 01111111
Q ss_pred cCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 213 LGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 213 ~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.. .....+.+.+|+|++++.++.... .....|+.+++.+|...
T Consensus 222 ~~---------~p~~~~~~pedvA~~v~~l~s~~~--------~~~~tG~~i~vdgG~~~ 264 (280)
T 1xkq_A 222 EC---------IPIGAAGKPEHIANIILFLADRNL--------SFYILGQSIVADGGTSL 264 (280)
T ss_dssp TT---------CTTSSCBCHHHHHHHHHHHHCHHH--------HTTCCSCEEEESTTGGG
T ss_pred cC---------CCCCCCCCHHHHHHHHHHhcCccc--------ccCccCCeEEECCCccc
Confidence 11 122358899999999998875210 11356899999887543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=194.86 Aligned_cols=234 Identities=17% Similarity=0.168 Sum_probs=162.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++|++|||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++ ++
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 104 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCH-VLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGV 104 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999998 99999875421111 1124568899999999999888775 68
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|++||+||..... .+..+++..+++|+.|+.++++++.+ .+..++|++||...+.+.. +
T Consensus 105 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~------------~- 171 (277)
T 3gvc_A 105 DKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVG------------G- 171 (277)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT------------T-
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC------------C-
Confidence 9999999975432 23456778899999999999998865 4556899999987632211 1
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||...|.+++....+ + +..|+++.+++|+.|++|.........-............ ......+.+
T Consensus 172 ---~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~ 242 (277)
T 3gvc_A 172 ---TGAYGMSKAGIIQLSRITAAE-L---RSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMI--ARLQGRMAA 242 (277)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHHHHTCC------CCHHHHH--HHHHSSCBC
T ss_pred ---chhHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhh--hccccCCCC
Confidence 267999999999998765431 1 1468999999999999873211000000000000000000 011235788
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.+|+|++++.++... .....|+++++.+|...+
T Consensus 243 pedvA~~v~~L~s~~---------a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 243 PEEMAGIVVFLLSDD---------ASMITGTTQIADGGTIAA 275 (277)
T ss_dssp HHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGS
T ss_pred HHHHHHHHHHHcCCc---------cCCccCcEEEECCcchhc
Confidence 999999999887521 224679999999886554
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-22 Score=191.39 Aligned_cols=224 Identities=18% Similarity=0.136 Sum_probs=160.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++|++|||||+|+||++++++|+++|++ |++++|+....... ......+.++.+|++|.++++++++
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999 99999875421110 1123568899999999999888775
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH------cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE------FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~------~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||...... +..+.+..+++|+.|+.++++++.+ .+..++|++||...+.+..
T Consensus 101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~---------- 170 (279)
T 3sju_A 101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVM---------- 170 (279)
T ss_dssp SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCC----------
Confidence 6899999999754322 2345677889999999999999866 4567999999987642211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----------cHHHHHHHHHcCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----------HLPRIVSLAKLGLV 216 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----------~~~~~i~~~~~g~~ 216 (478)
+ ...|+.||...+.+++....+ + ...|+++.+++|+.|.++.... ..+.....+...
T Consensus 171 --~----~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 238 (279)
T 3sju_A 171 --Y----AAPYTASKHGVVGFTKSVGFE-L---AKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAK-- 238 (279)
T ss_dssp --T----CHHHHHHHHHHHHHHHHHHHH-T---GGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTT--
T ss_pred --C----ChhHHHHHHHHHHHHHHHHHH-H---HhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhc--
Confidence 1 267999999999988766532 1 1468999999999998863211 112222222222
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.....+.+++|+|++++.++.. ......|+++++.+|..
T Consensus 239 -------~p~~r~~~pedvA~~v~~L~s~---------~a~~itG~~i~vdGG~~ 277 (279)
T 3sju_A 239 -------IPLGRYSTPEEVAGLVGYLVTD---------AAASITAQALNVCGGLG 277 (279)
T ss_dssp -------CTTSSCBCHHHHHHHHHHHTSS---------GGGGCCSCEEEESTTCC
T ss_pred -------CCCCCCCCHHHHHHHHHHHhCc---------cccCcCCcEEEECCCcc
Confidence 2234578899999999887752 12246799999988753
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-22 Score=193.06 Aligned_cols=228 Identities=14% Similarity=0.108 Sum_probs=164.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c---ccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L---LINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~---~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
++++++|++|||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|.++++++++
T Consensus 15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 15 VLRLDGKRALITGATKGIGADIARAFAAAGAR-LVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAA 93 (266)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 34577899999999999999999999999999 99999865421110 0 024578999999999998887775
Q ss_pred ----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|++||+||...... +..+++..+++|+.|+.++.+++.+. + -.++|++||...+.+..
T Consensus 94 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 166 (266)
T 4egf_A 94 EAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLP------- 166 (266)
T ss_dssp HHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCC-------
Confidence 7899999999754322 33456778899999999999988654 2 35899999988742211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~ 222 (478)
+ ...|+.||...+.+.+.+..+ + ...|+++.+++|+.|.++..... .+.....+....
T Consensus 167 -----~----~~~Y~asK~a~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------- 226 (266)
T 4egf_A 167 -----D----HYAYCTSKAGLVMATKVLARE-L---GPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARI------- 226 (266)
T ss_dssp -----T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTC-------
T ss_pred -----C----ChHHHHHHHHHHHHHHHHHHH-H---hhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcC-------
Confidence 1 267999999999988766432 1 13689999999999988742110 111222222222
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
....+...+|+|++++.++... .....|+++++.+|..+
T Consensus 227 --p~~r~~~p~dva~~v~~L~s~~---------~~~itG~~i~vdGG~~~ 265 (266)
T 4egf_A 227 --PLGRFAVPHEVSDAVVWLASDA---------ASMINGVDIPVDGGYTM 265 (266)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGG
T ss_pred --CCCCCcCHHHHHHHHHHHhCch---------hcCccCcEEEECCCccC
Confidence 2235678999999999887621 23467999999887543
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-22 Score=191.25 Aligned_cols=207 Identities=16% Similarity=0.146 Sum_probs=150.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
++++|++|||||+|+||++++++|+++|++ |++++|+.... ......++.++++|++|.++++++++ ++|
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~--~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 89 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGHP-LLLLARRVERL--KALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPAD 89 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHH--HTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHH--HHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 466789999999999999999999999999 99999875421 12233478899999999999888776 789
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|||+||...... +..+.+..+++|+.|+.++++++. +.+..++|++||...+.+.. +
T Consensus 90 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~------------~-- 155 (266)
T 3p19_A 90 AIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFP------------D-- 155 (266)
T ss_dssp EEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT------------T--
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCC------------C--
Confidence 9999999753322 334567789999999999777765 45678999999988742211 1
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||...+.+.+.+..+ + +..|+++.+++|+.|.++...... ........... .....+++
T Consensus 156 --~~~Y~asK~a~~~~~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~--------~~~~r~~~ 221 (266)
T 3p19_A 156 --HAAYCGTKFAVHAISENVREE-V---AASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWR--------VDMGGVLA 221 (266)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHH--------HHTTCCBC
T ss_pred --CchHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEeeCccccchhhcccchhhhHHHHhhc--------ccccCCCC
Confidence 267999999999988766432 1 136899999999999988543211 11111111100 01234788
Q ss_pred HHHHHHHHHHHHhc
Q 011770 232 VDNLVLALILASMG 245 (478)
Q Consensus 232 V~Dva~a~~~a~~~ 245 (478)
.+|+|++++.++..
T Consensus 222 pedvA~av~~l~~~ 235 (266)
T 3p19_A 222 ADDVARAVLFAYQQ 235 (266)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999873
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=186.36 Aligned_cols=213 Identities=12% Similarity=0.084 Sum_probs=158.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
.++|+|+||||+|+||++++++|+++|++ |++++|+.... .-..+.+|++|.++++++++ ++|+
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~--------~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~ 90 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKSWN-TISIDFRENPN--------ADHSFTIKDSGEEEIKSVIEKINSKSIKVDT 90 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCTT--------SSEEEECSCSSHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCcccc--------cccceEEEeCCHHHHHHHHHHHHHHcCCCCE
Confidence 45789999999999999999999999999 99999986532 12357899999999888775 4699
Q ss_pred EEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHcCC--CeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 82 VFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 82 ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~~v--~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
|||+||.... .....+.+..+++|+.|+.++++++.+.-. .++|++||...+.+.. +
T Consensus 91 li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------------~---- 154 (251)
T 3orf_A 91 FVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTS------------G---- 154 (251)
T ss_dssp EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT------------T----
T ss_pred EEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCC------------C----
Confidence 9999996432 223456678889999999999999987532 3899999988743211 1
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
...|+.||...|.+++.+..+. .. ...++++.+++|+.|.++. .+.... ......+++.+|
T Consensus 155 ~~~Y~~sKaa~~~~~~~la~e~-~~-~~~gi~v~~v~PG~v~t~~--------~~~~~~---------~~~~~~~~~~~d 215 (251)
T 3orf_A 155 MIAYGATKAATHHIIKDLASEN-GG-LPAGSTSLGILPVTLDTPT--------NRKYMS---------DANFDDWTPLSE 215 (251)
T ss_dssp BHHHHHHHHHHHHHHHHHTSTT-SS-SCTTCEEEEEEESCBCCHH--------HHHHCT---------TSCGGGSBCHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHh-cc-cCCCcEEEEEecCcCcCcc--------hhhhcc---------cccccccCCHHH
Confidence 2679999999999998876531 10 0478999999999997752 111111 123456889999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
+|++++.++.... .....|+.+++.+++..+
T Consensus 216 va~~i~~l~~~~~--------~~~~tG~~i~v~~g~~~~ 246 (251)
T 3orf_A 216 VAEKLFEWSTNSD--------SRPTNGSLVKFETKSKVT 246 (251)
T ss_dssp HHHHHHHHHHCGG--------GCCCTTCEEEEEEETTEE
T ss_pred HHHHHHHHhcCcc--------ccCCcceEEEEecCCccc
Confidence 9999999887301 124679999998776543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-22 Score=192.23 Aligned_cols=228 Identities=16% Similarity=0.139 Sum_probs=165.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc------C
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR------G 78 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~------~ 78 (478)
++++++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.++++++++ +
T Consensus 25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 103 (281)
T 3ppi_A 25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLG-VVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGR 103 (281)
T ss_dssp CGGGTTEEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 34567889999999999999999999999998 99999875421111 1124568999999999999988776 5
Q ss_pred cCEEEEc-ccCCCCc---------hhhhchhhhhHhhhHHHHHHHHHHHHc----------CCCeEEEEeccceeeCCcc
Q 011770 79 VDCVFHV-ASYGMSG---------KEMLQFGRVDEVNINGTCHVIEACLEF----------GIQRLVYVSTYNVVFGGKE 138 (478)
Q Consensus 79 ~D~ViHl-Aa~~~~~---------~~~~~~~~~~~vNv~gt~nll~aa~~~----------~v~r~V~~SS~~v~~g~~~ 138 (478)
+|++||+ |+..... .+..+....+++|+.|+.++++++... +-.++|++||...+.+..
T Consensus 104 id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~- 182 (281)
T 3ppi_A 104 LRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQI- 182 (281)
T ss_dssp EEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCCT-
T ss_pred CCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCCC-
Confidence 7999999 4443221 223346788899999999999988743 234899999988742211
Q ss_pred ccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCe
Q 011770 139 IVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPF 218 (478)
Q Consensus 139 ~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~ 218 (478)
....|+.||...+.+++....+ + ...|+++.+++|+.|..+......+..........+.
T Consensus 183 ---------------~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~- 242 (281)
T 3ppi_A 183 ---------------GQTAYAAAKAGVIGLTIAAARD-L---SSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIPF- 242 (281)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHTTCHHHHHHHHHTCCS-
T ss_pred ---------------CCcccHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEecCcCCchhhhcccHHHHHHHHhcCCC-
Confidence 1267999999999888765432 1 1368999999999998764332223333333333221
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
...+.+.+|+|++++.++. .....|+.+++.+|..++
T Consensus 243 -------~~~~~~pedvA~~v~~l~s-----------~~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 243 -------PKRLGTPDEFADAAAFLLT-----------NGYINGEVMRLDGAQRFT 279 (281)
T ss_dssp -------SSSCBCHHHHHHHHHHHHH-----------CSSCCSCEEEESTTCCCC
T ss_pred -------CCCCCCHHHHHHHHHHHHc-----------CCCcCCcEEEECCCcccC
Confidence 1357899999999999887 235789999999887654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.6e-22 Score=187.95 Aligned_cols=227 Identities=16% Similarity=0.202 Sum_probs=157.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++ ++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999999999999999999999998 99998865321110 0113468899999999999888775 46
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|+|||+|+..... .+..+++..+++|+.|+.++.+++. +.+ .++|++||...+.+. |
T Consensus 82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------------~- 146 (253)
T 1hxh_A 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPI-------------E- 146 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCC-------------T-
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCC-------------C-
Confidence 9999999975432 1334567888999998887776554 456 799999998774221 1
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCC--cceEEEEeCCceeCCCCCCcH-HHHHHH-HHcCCCCeeeCCCCccc
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRK--CLYTCAVRPAAIYGPGEERHL-PRIVSL-AKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~--gl~~~ilRp~~vyGp~~~~~~-~~~i~~-~~~g~~~~~~g~g~~~~ 227 (478)
....|+.||...|.+++....+ +. .. +++++++||+.|++|...... +..... +.... ......
T Consensus 147 --~~~~Y~~sK~a~~~~~~~la~e-~~---~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~------~~~p~~ 214 (253)
T 1hxh_A 147 --QYAGYSASKAAVSALTRAAALS-CR---KQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDP------KLNRAG 214 (253)
T ss_dssp --TBHHHHHHHHHHHHHHHHHHHH-HH---HHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBT------TTBTTC
T ss_pred --CCccHHHHHHHHHHHHHHHHHH-hh---hcCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhh------ccCccC
Confidence 1257999999999998776431 10 13 899999999999997421100 000000 10000 011223
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.+.+.+|+|++++.++... .....|+.+++.+|..
T Consensus 215 ~~~~~~dvA~~~~~l~s~~---------~~~~tG~~~~vdgG~~ 249 (253)
T 1hxh_A 215 RAYMPERIAQLVLFLASDE---------SSVMSGSELHADNSIL 249 (253)
T ss_dssp CEECHHHHHHHHHHHHSGG---------GTTCCSCEEEESSSCT
T ss_pred CCCCHHHHHHHHHHHcCcc---------ccCCCCcEEEECCCcc
Confidence 5789999999999887631 1235688999987743
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-22 Score=186.22 Aligned_cols=207 Identities=13% Similarity=0.042 Sum_probs=155.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVF 83 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~Vi 83 (478)
+++++|+++||||+|+||++++++|.++|++ |++++|+.. +|++|+++++++++ ++|++|
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~----------------~D~~~~~~v~~~~~~~g~id~lv 64 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTI-VHVASRQTG----------------LDISDEKSVYHYFETIGAFDHLI 64 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTEE-EEEESGGGT----------------CCTTCHHHHHHHHHHHCSEEEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEecCCcc----------------cCCCCHHHHHHHHHHhCCCCEEE
Confidence 3467889999999999999999999999998 999987643 89999999998876 689999
Q ss_pred EcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHcCC--CeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 84 HVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 84 HlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~~v--~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
|+||.... ..+..+++..+++|+.|+.++++++.+.-. .++|++||...+.+. .+ ..
T Consensus 65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------~~----~~ 128 (223)
T 3uce_A 65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVV------------AN----TY 128 (223)
T ss_dssp ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCC------------TT----CH
T ss_pred ECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCC------------CC----ch
Confidence 99996521 123445677899999999999999987632 389999998763221 11 26
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH----HHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP----RIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~----~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
.|+.||...|.+.+.+..+. .. +++.+++|+.+.+|......+ .+......+.+ ...+.+.
T Consensus 129 ~Y~asK~a~~~~~~~la~e~-----~~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 193 (223)
T 3uce_A 129 VKAAINAAIEATTKVLAKEL-----AP-IRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLP---------VGKVGEA 193 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TT-SEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHST---------TCSCBCH
T ss_pred HHHHHHHHHHHHHHHHHHhh-----cC-cEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCC---------CCCccCH
Confidence 79999999999998765421 12 999999999999885443222 22222322222 2357789
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
+|+|++++.++. .....|+.+++.+|..+
T Consensus 194 ~dvA~~~~~l~~-----------~~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 194 SDIAMAYLFAIQ-----------NSYMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHHHH-----------CTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHcc-----------CCCCCCcEEEecCCeec
Confidence 999999998886 23567999999988654
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=187.42 Aligned_cols=229 Identities=16% Similarity=0.150 Sum_probs=157.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
+++++|+++||||+|+||++++++|+++|++ |++++++....... ......+.++++|++|.++++++++
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999999999999998 99886554422111 1123568899999999999988876
Q ss_pred ---CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHcCCC--eEEEEeccceeeCCccccCCCCCCC
Q 011770 78 ---GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEFGIQ--RLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~--r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+||.... ..+..+++..+++|+.|+.++++++.+.-.+ ++|++||...+..+.
T Consensus 83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 152 (259)
T 3edm_A 83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGG---------- 152 (259)
T ss_dssp HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCS----------
T ss_pred HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCC----------
Confidence 68999999986422 1233455788999999999999999886433 899999987641111
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCCCcc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
| ....|+.||...+.+.+....+ + ...+++.++.|+.|..+...... +..... .......
T Consensus 153 --~---~~~~Y~asKaa~~~l~~~la~e-~----~~~I~vn~v~PG~v~T~~~~~~~~~~~~~~---------~~~~~p~ 213 (259)
T 3edm_A 153 --P---GALAYATSKGAVMTFTRGLAKE-V----GPKIRVNAVCPGMISTTFHDTFTKPEVRER---------VAGATSL 213 (259)
T ss_dssp --T---TCHHHHHHHHHHHHHHHHHHHH-H----TTTCEEEEEEECCBCC------------------------------
T ss_pred --C---CcHHHHHHHHHHHHHHHHHHHH-H----CCCCEEEEEEECCCcCcccccccChHHHHH---------HHhcCCC
Confidence 0 1267999999999998766532 1 12399999999999887543221 111111 1122233
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
..+.+.+|+|++++.++... .....|+.+++.+|...+.
T Consensus 214 ~r~~~pedva~~v~~L~s~~---------~~~itG~~i~vdGg~~~~~ 252 (259)
T 3edm_A 214 KREGSSEDVAGLVAFLASDD---------AAYVTGACYDINGGVLFSE 252 (259)
T ss_dssp -CCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESBCSSBC-
T ss_pred CCCcCHHHHHHHHHHHcCcc---------ccCccCCEEEECCCcCCCC
Confidence 56778999999999887631 2245799999988766553
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=191.84 Aligned_cols=171 Identities=19% Similarity=0.192 Sum_probs=129.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---------cccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---------LLINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---------~~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
|++|+++||||+|+||++++++|+++|++ |++.+|+....... .....++.++++|++|.+++.++++
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~ 81 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQI 81 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 45789999999999999999999999999 99998864321100 1123568999999999999988887
Q ss_pred -----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCC
Q 011770 78 -----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+||+...+. +..+.+..+++|+.|+.++++++ ++.+..++|++||...+.+..+
T Consensus 82 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~------ 155 (324)
T 3u9l_A 82 IGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPP------ 155 (324)
T ss_dssp HHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCS------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCC------
Confidence 7999999999753322 33456778899999999999999 5667789999999876322111
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
....|+.||...|.+++.+..+ + ...|+++++++|+.|.++.
T Consensus 156 ---------~~~~Y~asKaa~~~~~~~la~e-l---~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 156 ---------YLAPYFAAKAAMDAIAVQYARE-L---SRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHHH-H---HTTTEEEEEEEECCC----
T ss_pred ---------cchhHHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEECCccccCc
Confidence 1257999999999998776431 1 1368999999999998764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=187.26 Aligned_cols=234 Identities=15% Similarity=0.160 Sum_probs=164.9
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc------ccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL------LINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~------~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
++++++|+++||||+|+||++++++|+++|++ |++++|+........ .....+.++.+|++|.++++++++
T Consensus 5 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (267)
T 3t4x_A 5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY 83 (267)
T ss_dssp CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc
Confidence 34577899999999999999999999999999 999998754211100 012457889999999999888876
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+||...... +..+.+..+++|+.|+.++.+++.+ .+..++|++||...+.+..
T Consensus 84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 152 (267)
T 3t4x_A 84 PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQ----------- 152 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCT-----------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCC-----------
Confidence 7899999999754322 2345667789999998888776654 4667999999987742211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-----------HHHHHHHHHcCCCC
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-----------LPRIVSLAKLGLVP 217 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-----------~~~~i~~~~~g~~~ 217 (478)
+ ...|+.||...|.+.+.+..+ + +..++++.+++|+.+.++..... .....+......
T Consensus 153 -~----~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 221 (267)
T 3t4x_A 153 -E----MAHYSATKTMQLSLSRSLAEL-T---TGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKEN-- 221 (267)
T ss_dssp -T----CHHHHHHHHHHHHHHHHHHHH-T---TTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHH--
T ss_pred -c----chHHHHHHHHHHHHHHHHHHH-h---CCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhcc--
Confidence 1 267999999999999876532 1 24789999999999987631110 011111111100
Q ss_pred eeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 218 FKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 218 ~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
........+.+.+|+|++++.++... .....|+++++.+|...++
T Consensus 222 ---~~~~~~~r~~~pedvA~~v~fL~s~~---------~~~itG~~i~vdGG~~~si 266 (267)
T 3t4x_A 222 ---RPTSIIQRLIRPEEIAHLVTFLSSPL---------SSAINGSALRIDGGLVRSV 266 (267)
T ss_dssp ---CTTCSSCSCBCTHHHHHHHHHHHSGG---------GTTCCSCEEEESTTCSCSC
T ss_pred ---CCcccccCccCHHHHHHHHHHHcCcc---------ccCccCCeEEECCCccccc
Confidence 00112356889999999998887621 2246799999998876653
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=188.88 Aligned_cols=224 Identities=13% Similarity=0.100 Sum_probs=161.4
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCccc--cc-ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HL-LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~-~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||+ |+||++++++|+++|++ |++++|+...... .. ....++.++++|++|.++++++++
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567899999999 99999999999999998 9999987641100 00 111347889999999999888776
Q ss_pred -CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 -GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 -~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+||.... ..+..+.+..+++|+.|+.++++++.+.- -.++|++||...+.+.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---------- 152 (275)
T 2pd4_A 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM---------- 152 (275)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC----------
T ss_pred CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCC----------
Confidence 67999999997542 22344567889999999999999998761 1599999997763221
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~ 224 (478)
| ....|+.||...|.+++....+ + ...|+++++++|+.|.++..... .+.....+....+.
T Consensus 153 ---~---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------- 215 (275)
T 2pd4_A 153 ---A---HYNVMGLAKAALESAVRYLAVD-L---GKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL------- 215 (275)
T ss_dssp ---T---TCHHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-------
T ss_pred ---C---CchhhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCc-------
Confidence 1 1257999999999998766431 1 13689999999999999854321 23333333222211
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+.+.+|+|++++.++... .....|+.+++.+|..
T Consensus 216 --~~~~~p~dva~~~~~l~s~~---------~~~~tG~~~~vdgg~~ 251 (275)
T 2pd4_A 216 --RKNVSLEEVGNAGMYLLSSL---------SSGVSGEVHFVDAGYH 251 (275)
T ss_dssp --SSCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred --CCCCCHHHHHHHHHHHhCcc---------ccCCCCCEEEECCCcc
Confidence 23567899999999887521 1245788999987743
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=190.13 Aligned_cols=227 Identities=18% Similarity=0.116 Sum_probs=161.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.+++.++++
T Consensus 26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 104 (283)
T 1g0o_A 26 SLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 104 (283)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 466789999999999999999999999998 99999875421110 1123468899999999998887764
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|+|||+||...... +..+++..+++|+.|+.++++++.+. +..++|++||...+.+..
T Consensus 105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 172 (283)
T 1g0o_A 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAV------------ 172 (283)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSC------------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCC------------
Confidence 6899999999754321 34466788999999999999999987 567999999987532210
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-----------HHHHHHHHHcCCCCe
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-----------LPRIVSLAKLGLVPF 218 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-----------~~~~i~~~~~g~~~~ 218 (478)
+ ....|+.||...|.+++....+ + ...|+++++++|+.|.++..... -+.....+....
T Consensus 173 ~---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 242 (283)
T 1g0o_A 173 P---KHAVYSGSKGAIETFARCMAID-M---ADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ--- 242 (283)
T ss_dssp S---SCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH---
T ss_pred C---CCcchHHHHHHHHHHHHHHHHH-h---cccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhc---
Confidence 0 1267999999999998766431 1 13689999999999988731110 011111121100
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
......+.+.+|+|++++.++... .....|+.+++.+|.
T Consensus 243 ----~~p~~r~~~p~dvA~~v~~l~s~~---------~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 243 ----WSPLRRVGLPIDIARVVCFLASND---------GGWVTGKVIGIDGGA 281 (283)
T ss_dssp ----SCTTCSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTC
T ss_pred ----CCCCCCCcCHHHHHHHHHHHhCcc---------ccCcCCCEEEeCCCc
Confidence 011234778999999999888631 124678999998774
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=188.66 Aligned_cols=229 Identities=14% Similarity=0.070 Sum_probs=167.8
Q ss_pred CCCCCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 6 NEGIEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
++.+++|+++||||+| +||++++++|+++|++ |++++|+...... .......+.++++|++|.++++++++
T Consensus 25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 103 (296)
T 3k31_A 25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLA 103 (296)
T ss_dssp CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 4457789999999998 9999999999999999 9999987532110 01122457889999999999988875
Q ss_pred ----CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcCC--CeEEEEeccceeeCCccccCCC
Q 011770 78 ----GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~v--~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
++|++||+||.... ..+..++...+++|+.|+.++++++...-. .++|++||...+.+..
T Consensus 104 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~------ 177 (296)
T 3k31_A 104 EEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVP------ 177 (296)
T ss_dssp HHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCT------
T ss_pred HHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCC------
Confidence 67999999997542 223446678899999999999999987643 3899999987642211
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g 221 (478)
....|+.||...+.+.+.+..+ + +..|+++.+++|+.|.++...... ...........+.
T Consensus 178 ----------~~~~Y~asKaal~~l~~~la~e-~---~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~---- 239 (296)
T 3k31_A 178 ----------HYNVMGVCKAALEASVKYLAVD-L---GKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPL---- 239 (296)
T ss_dssp ----------TTTHHHHHHHHHHHHHHHHHHH-H---HTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTT----
T ss_pred ----------CchhhHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCC----
Confidence 1267999999999998766431 1 146899999999999998755432 2233333332222
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
..+...+|+|++++.++... .....|+++++.+|..+.
T Consensus 240 -----~r~~~pedvA~~v~fL~s~~---------a~~itG~~i~vdGG~~~~ 277 (296)
T 3k31_A 240 -----RRNTTLDDVGGAALYLLSDL---------GRGTTGETVHVDCGYHVV 277 (296)
T ss_dssp -----SSCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGC
T ss_pred -----CCCCCHHHHHHHHHHHcCCc---------cCCccCCEEEECCCcccc
Confidence 23567899999999888631 224679999999886544
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=189.97 Aligned_cols=229 Identities=15% Similarity=0.072 Sum_probs=156.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--ccc----cCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HLL----INHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~~----~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+...... ... ...++.++.+|++|.++++++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998 9999987542110 000 12358899999999999888776
Q ss_pred --CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHH----HHHcC---CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEA----CLEFG---IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~a----a~~~~---v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+||... ..+++..+++|+.|+.++.++ +++.+ ..++|++||...+.+.
T Consensus 84 ~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 147 (267)
T 2gdz_A 84 FGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV------------ 147 (267)
T ss_dssp HSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------
T ss_pred cCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC------------
Confidence 4799999999642 235677889999976655544 44433 5799999998774221
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHc-CCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCC---eeeCCCC
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSN-GRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVP---FKIGEPS 224 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~-~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~---~~~g~g~ 224 (478)
| ....|+.||...|.+++.+. ..++ ...++++++++|+.|.++........ ... +... .....+.
T Consensus 148 -~---~~~~Y~~sK~a~~~~~~~~ala~e~---~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~--~~~~~~~~~~~~~~ 216 (267)
T 2gdz_A 148 -A---QQPVYCASKHGIVGFTRSAALAANL---MNSGVRLNAICPGFVNTAILESIEKE--ENM--GQYIEYKDHIKDMI 216 (267)
T ss_dssp -T---TCHHHHHHHHHHHHHHHHHHHHHHH---HTCCEEEEEEEESCBSSHHHHGGGCH--HHH--GGGGGGHHHHHHHH
T ss_pred -C---CCchHHHHHHHHHHHHHHHHHHHHh---ccCCcEEEEEecCcCcchhhhccccc--ccc--chhhhHHHHHHHHh
Confidence 1 12579999999999887531 0011 14789999999999988632111000 000 0000 0000001
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHH
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE 276 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e 276 (478)
....+++.+|+|++++.++.. ....|+++++.+++..++.|
T Consensus 217 ~~~~~~~~~dvA~~v~~l~s~-----------~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 217 KYYGILDPPLIANGLITLIED-----------DALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp HHHCCBCHHHHHHHHHHHHHC-----------TTCSSCEEEEETTTEEEECC
T ss_pred ccccCCCHHHHHHHHHHHhcC-----------cCCCCcEEEecCCCcccccC
Confidence 123478999999999988872 24679999999988877654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=186.57 Aligned_cols=228 Identities=12% Similarity=0.089 Sum_probs=165.6
Q ss_pred CCCCCCeEEEEcCCCh--hHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 7 EGIEGKTFLVTGGLGH--VGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGf--IG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
+++++|+++||||+|+ ||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 3477899999999999 999999999999999 99998874321100 1112368999999999999888775
Q ss_pred -----CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcCC--CeEEEEeccceeeCCccccCC
Q 011770 78 -----GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~v--~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|++||+|+.... ..+..+....+++|+.++.++++++...-. .++|++||...+.+.
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------ 155 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVM------ 155 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC------
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccC------
Confidence 68999999997541 122345567889999999999999987643 489999998764221
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeee
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~ 220 (478)
| ....|+.||...+.+++....+ + ...|+++.+++|+.|..+..... .+.....+....+.
T Consensus 156 -------~---~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--- 218 (266)
T 3oig_A 156 -------P---NYNVMGVAKASLDASVKYLAAD-L---GKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPL--- 218 (266)
T ss_dssp -------T---TTHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTT---
T ss_pred -------C---CcchhHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCC---
Confidence 1 1267999999999998766432 1 14689999999999998754331 23333333332221
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
..+.+.+|+|++++.++... .....|+.+++.+|....
T Consensus 219 ------~~~~~p~dva~~v~~l~s~~---------~~~~tG~~i~vdGG~~~~ 256 (266)
T 3oig_A 219 ------RRTTTPEEVGDTAAFLFSDM---------SRGITGENLHVDSGFHIT 256 (266)
T ss_dssp ------SSCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGC
T ss_pred ------CCCCCHHHHHHHHHHHcCCc---------hhcCcCCEEEECCCeEEe
Confidence 24668999999999888631 224679999998875543
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=181.86 Aligned_cols=212 Identities=15% Similarity=0.089 Sum_probs=155.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---------CcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---------GVD 80 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---------~~D 80 (478)
++|+++||||+|+||++++++|+++|++ |++++|+.... .....++.+|++|.++++++++ ++|
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id 74 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSANDQ------ADSNILVDGNKNWTEQEQSILEQTASSLQGSQVD 74 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCCTT------SSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEecCcccc------ccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 4679999999999999999999999998 99999876532 1235678899999998887765 789
Q ss_pred EEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 81 CVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 81 ~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
+|||+||.... ..+..+.+..+++|+.|+.++++++.+.- -.++|++||...+.+. |
T Consensus 75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-------------~--- 138 (236)
T 1ooe_A 75 GVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT-------------P--- 138 (236)
T ss_dssp EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-------------T---
T ss_pred EEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCC-------------C---
Confidence 99999996532 22344567889999999999999998752 2489999998774221 1
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
....|+.||...|.+++.+..+. .. ...++++++++|+.++++.. ...... .....++..+
T Consensus 139 ~~~~Y~~sK~a~~~~~~~la~e~-~~-~~~gi~v~~v~Pg~v~t~~~--------~~~~~~---------~~~~~~~~~~ 199 (236)
T 1ooe_A 139 SMIGYGMAKAAVHHLTSSLAAKD-SG-LPDNSAVLTIMPVTLDTPMN--------RKWMPN---------ADHSSWTPLS 199 (236)
T ss_dssp TBHHHHHHHHHHHHHHHHHHSTT-SS-CCTTCEEEEEEESCBCCHHH--------HHHSTT---------CCGGGCBCHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-cc-cCCCeEEEEEecCcccCcch--------hhcCCC---------ccccccCCHH
Confidence 12679999999999998876532 10 03679999999999988621 111111 1123467789
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
|+|++++..+.... .....|+.+++.+|..
T Consensus 200 dvA~~i~~~l~s~~--------~~~~~G~~~~v~gg~~ 229 (236)
T 1ooe_A 200 FISEHLLKWTTETS--------SRPSSGALLKITTENG 229 (236)
T ss_dssp HHHHHHHHHHHCGG--------GCCCTTCEEEEEEETT
T ss_pred HHHHHHHHHHcCCC--------cccccccEEEEecCCC
Confidence 99999986553111 2245688888876643
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-22 Score=190.11 Aligned_cols=235 Identities=11% Similarity=0.119 Sum_probs=159.7
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----c--cccCCCeEEEEecCCCHHHHH
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----H--LLINHGVHCIQGDVVSKIDVE 73 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~--~~~~~~v~~v~gDl~d~~~l~ 73 (478)
|.++.++++++|+++||||+|+||++++++|+++|++ |++++|....... . .....++.++++|++|.++++
T Consensus 1 m~~~~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 79 (262)
T 3ksu_A 1 MSLTKYHDLKNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVA 79 (262)
T ss_dssp ---CCCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCE-EEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHH
T ss_pred CCCccccCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 6777777889999999999999999999999999998 9998875432100 0 111346889999999999998
Q ss_pred HHhc-------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCcccc
Q 011770 74 KAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIV 140 (478)
Q Consensus 74 ~~l~-------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~ 140 (478)
++++ ++|++||+||...... +..+.+..+++|+.|+.++++++.+. +..++|++||...+.+...
T Consensus 80 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~-- 157 (262)
T 3ksu_A 80 KLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGF-- 157 (262)
T ss_dssp HHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHCC--
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCCC--
Confidence 8876 6899999999654322 33456778899999999999999875 3458999999876432110
Q ss_pred CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeee
Q 011770 141 NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 141 ~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~ 220 (478)
...|+.||...+.+.+....+. +..|+++.++.|+.|..+....... .......
T Consensus 158 --------------~~~Y~asKaa~~~l~~~la~e~----~~~gi~vn~v~PG~v~T~~~~~~~~--------~~~~~~~ 211 (262)
T 3ksu_A 158 --------------YSTYAGNKAPVEHYTRAASKEL----MKQQISVNAIAPGPMDTSFFYGQET--------KESTAFH 211 (262)
T ss_dssp --------------CCC-----CHHHHHHHHHHHHT----TTTTCEEEEEEECCCCTHHHHTCC----------------
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHH----HHcCcEEEEEeeCCCcCccccccCc--------hHHHHHH
Confidence 2579999999999987765321 2468999999999997652111000 0000011
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCH
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINT 274 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~ 274 (478)
........+...+|+|++++.++.. .....|+.+++.+|.....
T Consensus 212 ~~~~~~~r~~~pedvA~~v~~L~s~----------~~~itG~~i~vdGg~~~~~ 255 (262)
T 3ksu_A 212 KSQAMGNQLTKIEDIAPIIKFLTTD----------GWWINGQTIFANGGYTTRE 255 (262)
T ss_dssp ----CCCCSCCGGGTHHHHHHHHTT----------TTTCCSCEEEESTTCCCC-
T ss_pred HhcCcccCCCCHHHHHHHHHHHcCC----------CCCccCCEEEECCCccCCC
Confidence 1112234577889999999988762 1246799999988765543
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-22 Score=191.12 Aligned_cols=226 Identities=14% Similarity=0.075 Sum_probs=148.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcC----cCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARG----VDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~----~D~ViHlA 86 (478)
||+|+||||+|+||++++++|+++|++ |++++|+..... . . +++|++|.+++++++++ +|+|||+|
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~----~----~-~~~Dl~~~~~v~~~~~~~~~~id~lv~~A 70 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIRDAEVI----A----D-LSTAEGRKQAIADVLAKCSKGMDGLVLCA 70 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSSEE----C----C-TTSHHHHHHHHHHHHTTCTTCCSEEEECC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCchhhc----c----c-cccCCCCHHHHHHHHHHhCCCCCEEEECC
Confidence 468999999999999999999999998 999998765211 1 1 57899999999998864 59999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCC-----C---------CC
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNES-----L---------PY 148 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~-----~---------p~ 148 (478)
|..... ...+..+++|+.|+.++++++.+ .+..++|++||...+.+.... +..+. . ..
T Consensus 71 g~~~~~---~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 146 (257)
T 1fjh_A 71 GLGPQT---KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDK-NPLALALEAGEEAKARAIVEHA 146 (257)
T ss_dssp CCCTTC---SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGG-CTTHHHHHHTCHHHHHHHHHTC
T ss_pred CCCCCc---ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhcccccc-chhhhhhcccchhhhhhhhhcc
Confidence 975311 23678899999999999999874 456799999999875321111 00000 0 00
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-HHHHHHHcCCCCeeeCCCCccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-RIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
.+ ......|+.||...|.+++....+ + ...++++++++|+.|.++....... ......... + .....
T Consensus 147 ~~-~~~~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~-----~--~~~~~ 214 (257)
T 1fjh_A 147 GE-QGGNLAYAGSKNALTVAVRKRAAA-W---GEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAK-----F--VPPMG 214 (257)
T ss_dssp CT-THHHHHHHHHHHHHHHHHHHTHHH-H---HHTTCEEEEEEECC--------------------------C--CCSTT
T ss_pred cC-CCCccHHHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEeeCCCCCccchhhccchhHHHHHHh-----c--ccccC
Confidence 01 112368999999999998765431 1 1368999999999999886432211 010101000 0 11123
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.+.+.+|+|++++.++... .....|+.+++.+|..
T Consensus 215 ~~~~~~dvA~~~~~l~~~~---------~~~~tG~~~~vdgG~~ 249 (257)
T 1fjh_A 215 RRAEPSEMASVIAFLMSPA---------ASYVHGAQIVIDGGID 249 (257)
T ss_dssp SCCCTHHHHHHHHHHTSGG---------GTTCCSCEEEESTTHH
T ss_pred CCCCHHHHHHHHHHHhCch---------hcCCcCCEEEECCCcc
Confidence 5789999999999887631 1245788999988753
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=183.44 Aligned_cols=235 Identities=16% Similarity=0.170 Sum_probs=165.6
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc------------c--------ccccCCCeEEEEe
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW------------S--------HLLINHGVHCIQG 64 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~------------~--------~~~~~~~v~~v~g 64 (478)
|+.++++|+++||||+|+||++++++|+++|++ |++++|+.+... . ......++.++++
T Consensus 5 m~~~l~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (286)
T 3uve_A 5 MTGRVEGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEV 83 (286)
T ss_dssp -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCcccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEc
Confidence 445678899999999999999999999999999 999998732110 0 0012346889999
Q ss_pred cCCCHHHHHHHhc-------CcCEEEEcccCCCCch-----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEE
Q 011770 65 DVVSKIDVEKAAR-------GVDCVFHVASYGMSGK-----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYV 127 (478)
Q Consensus 65 Dl~d~~~l~~~l~-------~~D~ViHlAa~~~~~~-----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~ 127 (478)
|++|.++++++++ ++|++||+||...... +..+++..+++|+.|+.++++++... + -.++|++
T Consensus 84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~i 163 (286)
T 3uve_A 84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILT 163 (286)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 9999999988776 7899999999754332 34566788999999999999988754 2 3589999
Q ss_pred eccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHH
Q 011770 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRI 207 (478)
Q Consensus 128 SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~ 207 (478)
||...+.+.+ ....|+.||...+.+.+.+..+ + +..|+++.+++|+.|..+.......
T Consensus 164 sS~~~~~~~~----------------~~~~Y~asKaa~~~~~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~-- 221 (286)
T 3uve_A 164 SSVGGLKAYP----------------HTGHYVAAKHGVVGLMRAFGVE-L---GQHMIRVNSVHPTHVKTPMLHNEGT-- 221 (286)
T ss_dssp CCGGGTSCCT----------------TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESSBSSTTTSSHHH--
T ss_pred CchhhccCCC----------------CccHHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEecCcccCCcccccch--
Confidence 9987642211 1257999999999988766432 1 1468999999999999986543110
Q ss_pred HHHHHcCCC-Ce--------eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 208 VSLAKLGLV-PF--------KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 208 i~~~~~g~~-~~--------~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
......... .. ....... ..+.+.+|+|++++.++... .....|++++|.+|..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~---------a~~itG~~i~vdGG~~l 285 (286)
T 3uve_A 222 FKMFRPDLENPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDE---------ARYITGVTLPIDAGSCL 285 (286)
T ss_dssp HHHHCTTSSSCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGG
T ss_pred hhhccccccccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCcc---------ccCCcCCEEeECCcccc
Confidence 011100000 00 0111111 46889999999999887521 22467999999888643
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=192.74 Aligned_cols=227 Identities=14% Similarity=0.084 Sum_probs=164.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCH-TVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKE 102 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998 99999875421110 0124568999999999999888776
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+++..+++|+.|+.++.+++.. .+..++|++||...+.+...
T Consensus 103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 173 (277)
T 4fc7_A 103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQAL--------- 173 (277)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCTT---------
T ss_pred cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCC---------
Confidence 689999999964332 23446678899999999999999854 34569999999877432211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC---cHHHHHHHHHcCCCCeeeCCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---HLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~---~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
...|+.||...+.+++....+ + +..|+++.+++|+.|+++.... .............+
T Consensus 174 -------~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p-------- 234 (277)
T 4fc7_A 174 -------QVHAGSAKAAVDAMTRHLAVE-W---GPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASP-------- 234 (277)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTST--------
T ss_pred -------cHHHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCC--------
Confidence 257999999999998766432 1 1368999999999999873211 01122222222222
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
...+...+|+|++++.++... .....|+++++.+|..++
T Consensus 235 -~~r~~~p~dvA~~v~fL~s~~---------~~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 235 -LQRLGNKTEIAHSVLYLASPL---------ASYVTGAVLVADGGAWLT 273 (277)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTHHHH
T ss_pred -CCCCcCHHHHHHHHHHHcCCc---------cCCcCCCEEEECCCcccC
Confidence 234678999999999887621 224679999998886543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=189.22 Aligned_cols=207 Identities=17% Similarity=0.063 Sum_probs=149.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHH-cCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVR-RGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.++|+|+||||+|+||++++++|++ +|++ |++++|+....... .....++.++.+|++|.+++.++++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGD-VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSE-EEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCe-EEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999 8998 99999875421100 0113468899999999999988876
Q ss_pred -CcCEEEEcccCCCCchh----hhchhhhhHhhhHHHHHHHHHHHHcCC--CeEEEEeccceeeCCcc----------cc
Q 011770 78 -GVDCVFHVASYGMSGKE----MLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVSTYNVVFGGKE----------IV 140 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~~----~~~~~~~~~vNv~gt~nll~aa~~~~v--~r~V~~SS~~v~~g~~~----------~~ 140 (478)
++|+|||+||....... ..+.+..+++|+.|+.++++++.+... .++|++||..++++... ..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~ 160 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 160 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccc
Confidence 78999999996533221 245677899999999999999988632 49999999887543110 01
Q ss_pred CCCCCC-------------------CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC
Q 011770 141 NGNESL-------------------PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE 201 (478)
Q Consensus 141 ~~~E~~-------------------p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~ 201 (478)
+.+|+. +..| .+.|+.||...|.+++.+..+.-......++++++++|+.|.++...
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~ 236 (276)
T 1wma_A 161 TITEEELVGLMNKFVEDTKKGVHQKEGWP----SSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 236 (276)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCTTTTTCC----SCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC
T ss_pred ccchhhhhhhhhhhhhhhcccccccCCCc----cchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCC
Confidence 112211 1112 26899999999999876643110000015899999999999887432
Q ss_pred CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 202 RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 202 ~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
. ..+.+.+|+|++++.++.
T Consensus 237 ~------------------------~~~~~~~~~a~~~~~l~~ 255 (276)
T 1wma_A 237 P------------------------KATKSPEEGAETPVYLAL 255 (276)
T ss_dssp T------------------------TCSBCHHHHTHHHHHHHS
T ss_pred c------------------------cccCChhHhhhhHhhhhc
Confidence 1 136789999999998886
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=191.49 Aligned_cols=217 Identities=18% Similarity=0.116 Sum_probs=142.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc----cc--CCCeEEEEecCCCHHHHHHHhc---
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL----LI--NHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~----~~--~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
+++++++||||||+|+||++++++|+++|++ |++++|+........ .. ...+.++.+|++|.+++.++++
T Consensus 4 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~-Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCTTCEEEEETTTSTHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999999999998 999998754211100 01 1268999999999999888876
Q ss_pred ----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC----------CCeEEEEeccceeeCCccc
Q 011770 78 ----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG----------IQRLVYVSTYNVVFGGKEI 139 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~----------v~r~V~~SS~~v~~g~~~~ 139 (478)
++|+|||+||...... +..+.+..+++|+.|+.++++++.... -.++|++||...+.+..
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~-- 160 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAG-- 160 (319)
T ss_dssp HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCS--
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCC--
Confidence 5799999999754322 334567789999999999999987653 34799999988743211
Q ss_pred cCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCC
Q 011770 140 VNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVP 217 (478)
Q Consensus 140 ~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~ 217 (478)
. ...|+.||...+.+...+..+ + ...|+++++++|+.|.++..... .+..+.........
T Consensus 161 -----------~---~~~Y~aSKaal~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 222 (319)
T 3ioy_A 161 -----------S---PGIYNTTKFAVRGLSESLHYS-L---LKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDK 222 (319)
T ss_dssp -----------S---SHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEECCCCBC-----------------------
T ss_pred -----------C---CHHHHHHHHHHHHHHHHHHHH-h---hhcCCEEEEEEcCeEccCcccccccCchhhcccccchhH
Confidence 1 257999999655555433211 0 13689999999999998753321 11111100000000
Q ss_pred eeeCCC-CccccceeHHHHHHHHHHHHh
Q 011770 218 FKIGEP-SVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 218 ~~~g~g-~~~~~~v~V~Dva~a~~~a~~ 244 (478)
...... ......++.+|+|++++.+++
T Consensus 223 ~~~~~~~~~~~~~~~pe~vA~~~~~al~ 250 (319)
T 3ioy_A 223 TAVERLAGVHEFGMEPDVIGARVIEAMK 250 (319)
T ss_dssp ------CCGGGSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 000010 111123899999999999998
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=186.07 Aligned_cols=226 Identities=17% Similarity=0.120 Sum_probs=163.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
.++++|++|||||+|+||++++++|+++|++ |++++++....... .....++.++++|++|.++++++++
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAK-VVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999999998 99988765422111 1123568899999999999888776
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcCCC--eEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFGIQ--RLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~v~--r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+||...... +..+++..+++|+.|+.++++++.+.-.+ ++|++||..... .+.
T Consensus 93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 161 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD-----------FSV 161 (270)
T ss_dssp HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT-----------CCC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc-----------CCC
Confidence 6899999999754332 34567788999999999999999987544 999999976310 011
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------------cHHHHHHHHHcCCC
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------------HLPRIVSLAKLGLV 216 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------------~~~~~i~~~~~g~~ 216 (478)
.+ ...|+.||...+.+.+.+..+ + +..|+++.+++|+.|.++.... .............
T Consensus 162 ~~----~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 232 (270)
T 3is3_A 162 PK----HSLYSGSKGAVDSFVRIFSKD-C---GDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHAS- 232 (270)
T ss_dssp TT----CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHS-
T ss_pred CC----CchhHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcC-
Confidence 11 267999999999998766532 1 1368999999999999885321 1111222222221
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
....+.+.+|+|++++.++.. ......|+.+++.+|.
T Consensus 233 --------p~~r~~~p~dvA~~v~~L~s~---------~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 233 --------PLHRNGWPQDVANVVGFLVSK---------EGEWVNGKVLTLDGGA 269 (270)
T ss_dssp --------TTCSCBCHHHHHHHHHHHTSG---------GGTTCCSCEEEESTTC
T ss_pred --------CCCCCCCHHHHHHHHHHHcCC---------ccCCccCcEEEeCCCC
Confidence 223467899999999988752 1224679999998774
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=188.52 Aligned_cols=228 Identities=12% Similarity=0.108 Sum_probs=165.8
Q ss_pred CCCCCCCeEEEEcCCCh--hHHHHHHHHHHcCCceEEEEecCCCCccc--ccccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 6 NEGIEGKTFLVTGGLGH--VGSALCLELVRRGAYQVRAFDLRTNSPWS--HLLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGf--IG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
|..+++|+++||||+|+ ||++++++|+++|++ |++++|+...... ......++.++.+|++|.++++++++
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAE-LAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGK 99 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCE-EEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHH
Confidence 34567899999999988 999999999999998 9999988621110 11223458899999999999888775
Q ss_pred ---CcCEEEEcccCCCCc---------hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCC
Q 011770 78 ---GVDCVFHVASYGMSG---------KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~---------~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|+|||+||..... .+..+....+++|+.++.++++++... +..++|++||...+.+..
T Consensus 100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 174 (280)
T 3nrc_A 100 VWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMP----- 174 (280)
T ss_dssp HCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCT-----
T ss_pred HcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCC-----
Confidence 579999999975431 233456778899999999999999865 346999999987642211
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeee
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~ 220 (478)
+ ...|+.||...|.+++....+ + ...|+++.+++|+.|.++..... ............+.
T Consensus 175 -------~----~~~Y~asKaal~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~--- 236 (280)
T 3nrc_A 175 -------S----YNTMGVAKASLEATVRYTALA-L---GEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPL--- 236 (280)
T ss_dssp -------T----THHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTT---
T ss_pred -------C----chhhHHHHHHHHHHHHHHHHH-H---HHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCC---
Confidence 1 267999999999998765431 1 14689999999999998864431 23333333332221
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
..+...+|+|++++.++... .....|+++++.+|..+
T Consensus 237 ------~~~~~pedvA~~v~~l~s~~---------~~~~tG~~i~vdgG~~~ 273 (280)
T 3nrc_A 237 ------KKNVDIMEVGNTVAFLCSDM---------ATGITGEVVHVDAGYHC 273 (280)
T ss_dssp ------CSCCCHHHHHHHHHHTTSGG---------GTTCCSCEEEESTTGGG
T ss_pred ------CCCCCHHHHHHHHHHHhCcc---------cCCcCCcEEEECCCccc
Confidence 24667899999999877521 22467999999988654
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=185.96 Aligned_cols=224 Identities=16% Similarity=0.151 Sum_probs=162.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++++....... ......+.++++|++|.++++++++
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999 99997765321111 1123568899999999999988876
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|++||+||...... +..+++..+++|+.|+.++++++.+. +..++|++||.....++ ..
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~-----------~~ 175 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVP-----------WP 175 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCC-----------ST
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCC-----------CC
Confidence 7899999999754322 34466788999999999999999876 34699999996542211 11
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
+ ...|+.||...|.+.+....+ + +..|+++.+++|+.|.++...... ..........+ ...+
T Consensus 176 ~----~~~Y~asKaa~~~l~~~la~e-~---~~~gIrvn~v~PG~v~T~~~~~~~-~~~~~~~~~~~---------~~r~ 237 (271)
T 3v2g_A 176 G----ISLYSASKAALAGLTKGLARD-L---GPRGITVNIVHPGSTDTDMNPADG-DHAEAQRERIA---------TGSY 237 (271)
T ss_dssp T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCSSSSCSSC-SSHHHHHHTCT---------TSSC
T ss_pred C----chHHHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEecCCCcCCcccccc-hhHHHHHhcCC---------CCCC
Confidence 1 267999999999998766432 1 136899999999999998643211 11122222221 1246
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+|+|++++.++.. ......|+++++.+|.
T Consensus 238 ~~pedvA~~v~fL~s~---------~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 238 GEPQDIAGLVAWLAGP---------QGKFVTGASLTIDGGA 269 (271)
T ss_dssp BCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCc---------ccCCccCCEEEeCcCc
Confidence 6799999999888752 1234679999998774
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-22 Score=193.09 Aligned_cols=217 Identities=18% Similarity=0.199 Sum_probs=148.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++|+||||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.++++++++
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGAR-LVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999998 99999875421110 0123468999999999999988876
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cC-CCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FG-IQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++.. .+ ..++|++||...+.+..
T Consensus 107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 176 (301)
T 3tjr_A 107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNA---------- 176 (301)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCT----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCC----------
Confidence 789999999975432 23445678899999999999999754 33 46999999987743211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHH-HHHHHHcCCCCeeeCCCCcc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPR-IVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~-~i~~~~~g~~~~~~g~g~~~ 226 (478)
....|+.||...|.+.+....+ + ...|+++++++|+.|..+........ .........+...++.....
T Consensus 177 ------~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (301)
T 3tjr_A 177 ------GLGTYGVAKYGVVGLAETLARE-V---KPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQ 246 (301)
T ss_dssp ------TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEECCSCCCSSHHHHHHHHC--------------------
T ss_pred ------CchHHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEECCccccccccccccccchhhccccChhhhccccccc
Confidence 1267999999999888765432 1 13689999999999987632110000 00000011111223333455
Q ss_pred ccceeHHHHHHHHHHHHhc
Q 011770 227 TDWIYVDNLVLALILASMG 245 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~ 245 (478)
.++++++|+|++++.+++.
T Consensus 247 ~~~~~pedvA~~i~~~l~~ 265 (301)
T 3tjr_A 247 DESVSADDVARLTADAILA 265 (301)
T ss_dssp --CCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhc
Confidence 6789999999999999983
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-21 Score=182.69 Aligned_cols=196 Identities=13% Similarity=0.073 Sum_probs=147.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcC---CceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRG---AYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G---~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
.+++|+|+||||+|+||++++++|+++| ++ |++++|+........ ....++.++.+|++|.++++++++
T Consensus 18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 96 (267)
T 1sny_A 18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQH-LFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEG 96 (267)
T ss_dssp --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSE-EEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcE-EEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHH
Confidence 4678899999999999999999999999 88 999998765321110 113478999999999999888876
Q ss_pred -----CcCEEEEcccCCC-C----chhhhchhhhhHhhhHHHHHHHHHHHHc----------C-----CCeEEEEeccce
Q 011770 78 -----GVDCVFHVASYGM-S----GKEMLQFGRVDEVNINGTCHVIEACLEF----------G-----IQRLVYVSTYNV 132 (478)
Q Consensus 78 -----~~D~ViHlAa~~~-~----~~~~~~~~~~~~vNv~gt~nll~aa~~~----------~-----v~r~V~~SS~~v 132 (478)
++|+|||+||... . .....+.+..+++|+.|+.++++++.+. + ..++|++||...
T Consensus 97 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 176 (267)
T 1sny_A 97 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 176 (267)
T ss_dssp HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred hcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecccc
Confidence 7999999999754 1 1233456778899999999999998764 2 468999999887
Q ss_pred eeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHH
Q 011770 133 VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAK 212 (478)
Q Consensus 133 ~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~ 212 (478)
+.+.. +..+ ...|+.||...|.+++.+..+ + ...+++++++||+.|..+....
T Consensus 177 ~~~~~---------~~~~----~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~Pg~v~t~~~~~---------- 229 (267)
T 1sny_A 177 SIQGN---------TDGG----MYAYRTSKSALNAATKSLSVD-L---YPQRIMCVSLHPGWVKTDMGGS---------- 229 (267)
T ss_dssp CSTTC---------CSCC----CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEECCCSBCSTTTCT----------
T ss_pred cccCC---------CCCC----chHHHHHHHHHHHHHHHHHHH-h---hcCCcEEEEeCCcceecCCCCC----------
Confidence 43321 0111 257999999999998776431 1 1368999999999997764321
Q ss_pred cCCCCeeeCCCCccccceeHHHHHHHHHHHHhc
Q 011770 213 LGLVPFKIGEPSVKTDWIYVDNLVLALILASMG 245 (478)
Q Consensus 213 ~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~ 245 (478)
..++..+|+|+.++.++..
T Consensus 230 --------------~~~~~~~~~a~~~~~~~~~ 248 (267)
T 1sny_A 230 --------------SAPLDVPTSTGQIVQTISK 248 (267)
T ss_dssp --------------TCSBCHHHHHHHHHHHHHH
T ss_pred --------------CCCCCHHHHHHHHHHHHHh
Confidence 1246789999999998874
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-22 Score=187.22 Aligned_cols=226 Identities=19% Similarity=0.184 Sum_probs=160.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
+++++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++ +
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 4577899999999999999999999999998 99998875421111 1124568899999999999988876 7
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcC-CCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFG-IQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
+|++||+||...... +..+++..+++|+.|+.++.+++ ++.+ ..++|++||...+.+.+.
T Consensus 81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 149 (247)
T 3rwb_A 81 IDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPN----------- 149 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTT-----------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCC-----------
Confidence 899999999754322 34456788999999999999984 4445 579999999876432111
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
...|+.||...+.+.+....+ + ..+|+++.+++|+.|..+................. .....+
T Consensus 150 -----~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~--------~~~~r~ 212 (247)
T 3rwb_A 150 -----MAAYVAAKGGVIGFTRALATE-L---GKYNITANAVTPGLIESDGVKASPHNEAFGFVEML--------QAMKGK 212 (247)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH--------SSSCSC
T ss_pred -----chhhHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc--------cccCCC
Confidence 267999999999888766432 1 13689999999999988632211100000010000 011235
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+|+++++..++... .....|+++++.+|.
T Consensus 213 ~~pedva~~v~~L~s~~---------~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 213 GQPEHIADVVSFLASDD---------ARWITGQTLNVDAGM 244 (247)
T ss_dssp BCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHhCcc---------ccCCCCCEEEECCCc
Confidence 67899999999887631 224679999998774
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=183.03 Aligned_cols=227 Identities=16% Similarity=0.128 Sum_probs=160.4
Q ss_pred CCCCc-CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecC--CCHHHH
Q 011770 1 MHLSE-NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDV--VSKIDV 72 (478)
Q Consensus 1 m~~~~-~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl--~d~~~l 72 (478)
|+++. +..+++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++.+|+ +|.+++
T Consensus 1 M~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 79 (252)
T 3f1l_A 1 MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGAT-VILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENC 79 (252)
T ss_dssp CCCCCCTTTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHH
T ss_pred CCcCCcccccCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHH
Confidence 66553 34578899999999999999999999999998 99999875421110 01123688999999 999888
Q ss_pred HHHhc-------CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCC
Q 011770 73 EKAAR-------GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGG 136 (478)
Q Consensus 73 ~~~l~-------~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~ 136 (478)
+++++ ++|++||+||.... ..+..+++..+++|+.|+.++++++. +.+..++|++||...+.+.
T Consensus 80 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~ 159 (252)
T 3f1l_A 80 QQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGR 159 (252)
T ss_dssp HHHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCC
T ss_pred HHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCC
Confidence 87775 68999999996321 12334567889999999999999984 4566799999998764221
Q ss_pred ccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCC
Q 011770 137 KEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLV 216 (478)
Q Consensus 137 ~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~ 216 (478)
. + ...|+.||...+.+.+.+..+ + ...+++.++.|+.|..+. .......
T Consensus 160 ~------------~----~~~Y~asK~a~~~l~~~la~e-~----~~~irvn~v~PG~v~t~~--------~~~~~~~-- 208 (252)
T 3f1l_A 160 A------------N----WGAYAASKFATEGMMQVLADE-Y----QQRLRVNCINPGGTRTAM--------RASAFPT-- 208 (252)
T ss_dssp T------------T----CHHHHHHHHHHHHHHHHHHHH-T----TTTCEEEEEECCSBSSHH--------HHHHCTT--
T ss_pred C------------C----CchhHHHHHHHHHHHHHHHHH-h----cCCcEEEEEecCcccCch--------hhhhCCc--
Confidence 1 1 267999999999998776542 1 123999999999986641 1111111
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHH
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTF 275 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~ 275 (478)
.....+...+|++++++.++... .....|+.+++.+|...++.
T Consensus 209 -------~~~~~~~~p~dva~~~~~L~s~~---------~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 209 -------EDPQKLKTPADIMPLYLWLMGDD---------SRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp -------CCGGGSBCTGGGHHHHHHHHSGG---------GTTCCSCEEESSCC------
T ss_pred -------cchhccCCHHHHHHHHHHHcCcc---------ccCCCCCEEEeCCCcCCCCC
Confidence 12235678899999998887631 22467999999998876654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-21 Score=185.73 Aligned_cols=234 Identities=17% Similarity=0.178 Sum_probs=164.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc--------cc--------ccccCCCeEEEEecCCCH
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--------WS--------HLLINHGVHCIQGDVVSK 69 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~--------~~--------~~~~~~~v~~v~gDl~d~ 69 (478)
+.++++|+++||||+|+||++++++|+++|++ |++++|++... .. ......++.++++|++|.
T Consensus 23 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 101 (299)
T 3t7c_A 23 AGKVEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDF 101 (299)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence 34577899999999999999999999999999 99999874311 00 011235688999999999
Q ss_pred HHHHHHhc-------CcCEEEEcccCCCCch-----hhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccce
Q 011770 70 IDVEKAAR-------GVDCVFHVASYGMSGK-----EMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNV 132 (478)
Q Consensus 70 ~~l~~~l~-------~~D~ViHlAa~~~~~~-----~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v 132 (478)
++++++++ ++|++||+||...... +..+++..+++|+.|+.++++++... +..++|++||...
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~ 181 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGG 181 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhh
Confidence 99888775 6899999999654322 34566789999999999999998654 3568999999876
Q ss_pred eeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHH
Q 011770 133 VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAK 212 (478)
Q Consensus 133 ~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~ 212 (478)
+.+.. ....|+.||...+.+.+....+ + +..|+++.+++|+.|.++........ ....
T Consensus 182 ~~~~~----------------~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~--~~~~ 239 (299)
T 3t7c_A 182 LRGAE----------------NIGNYIASKHGLHGLMRTMALE-L---GPRNIRVNIVCPSSVATPMLLNEPTY--RMFR 239 (299)
T ss_dssp TSCCT----------------TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESCBSSTTTSSHHHH--HHHC
T ss_pred ccCCC----------------CcchHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEecCCccCccccccchh--hhhh
Confidence 42211 1267999999999988766432 1 13689999999999999865431110 0000
Q ss_pred cCCC-Ce--------eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 213 LGLV-PF--------KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 213 ~g~~-~~--------~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.... .. ....... ..+...+|+|++++.++... .....|+++++.+|..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~~---------a~~itG~~i~vdGG~~l 298 (299)
T 3t7c_A 240 PDLENPTVEDFQVASRQMHVLP-IPYVEPADISNAILFLVSDD---------ARYITGVSLPVDGGALL 298 (299)
T ss_dssp TTSSSCCHHHHHHHHHHHSSSS-CSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGG
T ss_pred hhhccchhhHHHHHhhhhcccC-cCCCCHHHHHHHHHHHhCcc---------cccCcCCEEeeCCCccc
Confidence 0000 00 0000011 35778999999999888621 22467999999888643
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=183.99 Aligned_cols=206 Identities=9% Similarity=-0.018 Sum_probs=140.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFT-VFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999998 99999876532111 1113568999999999999988886
Q ss_pred CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|++||+||..... .+..+.+..+++|+.|+.++.+++.. .+..++|++||...+.+..
T Consensus 83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 150 (252)
T 3h7a_A 83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGS------------ 150 (252)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCT------------
T ss_pred CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCC------------
Confidence 679999999975432 23445678899999999999998743 4556999999987643211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceE-EEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYT-CAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~-~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
....|+.||...+.+.+....+ + +..|+++ .++.|+.|..+......+..... ........
T Consensus 151 ----~~~~Y~asKaa~~~l~~~la~e-~---~~~gi~v~n~v~PG~v~T~~~~~~~~~~~~~---------~~~~~~~~- 212 (252)
T 3h7a_A 151 ----GFAAFASAKFGLRAVAQSMARE-L---MPKNIHVAHLIIDSGVDTAWVRERREQMFGK---------DALANPDL- 212 (252)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEEC------------------------------------
T ss_pred ----CCccHHHHHHHHHHHHHHHHHH-h---hhcCCEEEEEecCCccCChhhhccchhhhhh---------hhhcCCcc-
Confidence 1267999999999988766432 1 1368999 89999999877543322211111 11111223
Q ss_pred ceeHHHHHHHHHHHHh
Q 011770 229 WIYVDNLVLALILASM 244 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~ 244 (478)
+...+|+|++++.++.
T Consensus 213 ~~~pedvA~~~~~l~s 228 (252)
T 3h7a_A 213 LMPPAAVAGAYWQLYQ 228 (252)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8899999999999887
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=187.27 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=167.6
Q ss_pred CCCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
...++|+|+||||+ |+||++++++|+++|++ |++++|+...... .......+.++++|++|.++++++++
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAE-LAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCC-EEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45678999999999 99999999999999998 9999987432110 01123458899999999999988876
Q ss_pred ---CcCEEEEcccCCCCc---------hhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCC
Q 011770 78 ---GVDCVFHVASYGMSG---------KEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~---------~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
++|+|||+||..... .+..+....+++|+.|+.++++++.+.- -.++|++||...+.+..
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 162 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIP------ 162 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT------
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCC------
Confidence 679999999975431 3345667889999999999999998752 24899999987642211
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g 221 (478)
....|+.||...|.+++.+..+ + ...|+++.+++|+.|..+...... +..........+.
T Consensus 163 ----------~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---- 224 (271)
T 3ek2_A 163 ----------NYNTMGLAKAALEASVRYLAVS-L---GAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPL---- 224 (271)
T ss_dssp ----------TTTHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTT----
T ss_pred ----------CccchhHHHHHHHHHHHHHHHH-H---HhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCc----
Confidence 1267999999999998766431 1 146899999999999988655432 2333433333222
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHH
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFI 278 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~ 278 (478)
..+...+|+|++++.++... .....|+++++.+|...+..|+.
T Consensus 225 -----~~~~~pedva~~i~~l~s~~---------~~~~tG~~i~vdgG~~~~~~~~~ 267 (271)
T 3ek2_A 225 -----KRNVTIEQVGNAGAFLLSDL---------ASGVTAEVMHVDSGFNAVVGGMA 267 (271)
T ss_dssp -----SSCCCHHHHHHHHHHHHSGG---------GTTCCSEEEEESTTGGGBCCCC-
T ss_pred -----CCCCCHHHHHHHHHHHcCcc---------cCCeeeeEEEECCCeeeehhhhh
Confidence 34567999999999888631 23468999999999887765543
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=189.68 Aligned_cols=234 Identities=18% Similarity=0.219 Sum_probs=163.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc--------c--------ccccCCCeEEEEecCCCH
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW--------S--------HLLINHGVHCIQGDVVSK 69 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--------~--------~~~~~~~v~~v~gDl~d~ 69 (478)
|.++++|++|||||+|+||++++++|+++|++ |++++++..... . .......+.++++|++|.
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~ 119 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGAD-IVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDL 119 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCe-EEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 34567899999999999999999999999999 999988632110 0 001234688999999999
Q ss_pred HHHHHHhc-------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEecccee
Q 011770 70 IDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVV 133 (478)
Q Consensus 70 ~~l~~~l~-------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~ 133 (478)
++++++++ ++|++||+||...... +..+++..+++|+.|+.++++++.+. + -.++|++||...+
T Consensus 120 ~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~ 199 (317)
T 3oec_A 120 ASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGL 199 (317)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhc
Confidence 99888776 6899999999754322 34566788999999999999998653 2 3579999998874
Q ss_pred eCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHc
Q 011770 134 FGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKL 213 (478)
Q Consensus 134 ~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~ 213 (478)
.+.. ....|+.||...|.+.+.+..+ + +..|+++.+++|+.|+++..... .....+..
T Consensus 200 ~~~~----------------~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~ 257 (317)
T 3oec_A 200 RGAP----------------GQSHYAASKHGVQGLMLSLANE-V---GRHNIRVNSVNPGAVNTEMALNE--KLLKMFLP 257 (317)
T ss_dssp SCCT----------------TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBSSHHHHCH--HHHHHHCT
T ss_pred CCCC----------------CCcchHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEecCcccCccccch--hhhhhhhh
Confidence 3211 1267999999999998776532 1 13689999999999998742110 01111100
Q ss_pred CCC-C------eee-CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 214 GLV-P------FKI-GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 214 g~~-~------~~~-g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
... . ..+ ........+++++|+|++++.++.. ......|++++|.+|..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~p~~~~~pedvA~av~fL~s~---------~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 258 HLENPTREDAAELFSQLTLLPIPWVEPEDVSNAVAWLASD---------EARYIHGAAIPVDGGQL 314 (317)
T ss_dssp TCSSCCHHHHHHHHTTTCSSSSSSBCHHHHHHHHHHHTSG---------GGTTCCSCEEEESTTGG
T ss_pred hccccchhHHHHHHhhhccCCCCCCCHHHHHHHHHHHcCC---------cccCCCCCEEEECcchh
Confidence 000 0 000 0011125789999999999887752 12246799999988754
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=178.05 Aligned_cols=211 Identities=17% Similarity=0.101 Sum_probs=155.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---------Cc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---------GV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---------~~ 79 (478)
.++|+++||||+|+||++++++|+++|++ |++++|+.... .....++.+|++|.++++++++ ++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~i 77 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENEE------ASASVIVKMTDSFTEQADQVTAEVGKLLGDQKV 77 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCTT------SSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCE-EEEEeCChhhc------cCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 45689999999999999999999999998 99999876532 1235678899999998888775 68
Q ss_pred CEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 80 D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
|+|||+||.... .....+.+..+++|+.++.++.+++.+.- -.++|++||...+.+.. +
T Consensus 78 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------~-- 143 (241)
T 1dhr_A 78 DAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP------------G-- 143 (241)
T ss_dssp EEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT------------T--
T ss_pred CEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCC------------C--
Confidence 999999996532 22334567788999999999999998752 24899999987743211 1
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
...|+.||...|.+.+....+. .. ...++++++++|+.+-.+. ....... .....++..
T Consensus 144 --~~~Y~asK~a~~~~~~~la~e~-~~-~~~gi~v~~v~PG~v~T~~--------~~~~~~~---------~~~~~~~~~ 202 (241)
T 1dhr_A 144 --MIGYGMAKGAVHQLCQSLAGKN-SG-MPSGAAAIAVLPVTLDTPM--------NRKSMPE---------ADFSSWTPL 202 (241)
T ss_dssp --BHHHHHHHHHHHHHHHHHTSTT-SS-CCTTCEEEEEEESCEECHH--------HHHHSTT---------SCGGGSEEH
T ss_pred --chHHHHHHHHHHHHHHHHHHHh-cc-CCCCeEEEEEecCcccCcc--------ccccCcc---------hhhccCCCH
Confidence 2679999999999998876532 10 0368999999999986651 1111111 122356788
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+|+|++++.++.. ......|+.+.+.+++
T Consensus 203 ~~vA~~v~~l~~~---------~~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 203 EFLVETFHDWITG---------NKRPNSGSLIQVVTTD 231 (241)
T ss_dssp HHHHHHHHHHHTT---------TTCCCTTCEEEEEEET
T ss_pred HHHHHHHHHHhcC---------CCcCccceEEEEeCCC
Confidence 9999999988762 1224578888887654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=185.86 Aligned_cols=228 Identities=11% Similarity=0.047 Sum_probs=163.8
Q ss_pred CCCCCCeEEEEcCCCh--hHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGH--VGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGf--IG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
..+++|+++||||+|+ ||++++++|+++|++ |++.+|+...... ......++.++++|++|.++++++++
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 3477899999999999 999999999999999 9999887421100 01122468899999999999888776
Q ss_pred ---CcCEEEEcccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHcCC--CeEEEEeccceeeCCccccCCCC
Q 011770 78 ---GVDCVFHVASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEFGI--QRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~~v--~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|++||+||.... ..+..+++..+++|+.++.++++++.+.-. .++|++||...+.+..
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~------- 178 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMP------- 178 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCT-------
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCC-------
Confidence 68999999997531 123446678899999999999999987533 4899999987642211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~ 222 (478)
....|+.||...+.+.+.+..+ + +..|+++.+++|+.|.++.... .............+.
T Consensus 179 ---------~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----- 240 (293)
T 3grk_A 179 ---------NYNVMGVAKAALEASVKYLAVD-L---GPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPL----- 240 (293)
T ss_dssp ---------TTTHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTT-----
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHH-H---hHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCC-----
Confidence 1267999999999998766432 1 1468999999999999975432 123333333332222
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
..+...+|+|++++.++... .....|+.+++.+|..++
T Consensus 241 ----~r~~~pedvA~~v~~L~s~~---------~~~itG~~i~vdGG~~~~ 278 (293)
T 3grk_A 241 ----RRTVTIDEVGDVGLYFLSDL---------SRSVTGEVHHADSGYHVI 278 (293)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGGGB
T ss_pred ----CCCCCHHHHHHHHHHHcCcc---------ccCCcceEEEECCCcccC
Confidence 24567899999999887631 224679999999886543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=182.52 Aligned_cols=235 Identities=14% Similarity=0.108 Sum_probs=163.5
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC----------ccc-------ccccCCCeEEEEecCC
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS----------PWS-------HLLINHGVHCIQGDVV 67 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~----------~~~-------~~~~~~~v~~v~gDl~ 67 (478)
|+.++++|+++||||+|+||++++++|+++|++ |++++|+... ... .......+.++.+|++
T Consensus 5 m~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 83 (277)
T 3tsc_A 5 MAGKLEGRVAFITGAARGQGRAHAVRMAAEGAD-IIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTR 83 (277)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 445678899999999999999999999999998 9999984221 000 0112356889999999
Q ss_pred CHHHHHHHhc-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccc
Q 011770 68 SKIDVEKAAR-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYN 131 (478)
Q Consensus 68 d~~~l~~~l~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~ 131 (478)
|.++++++++ ++|++||+||..... .+..+++..+++|+.|+.++++++... + -.++|++||..
T Consensus 84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~ 163 (277)
T 3tsc_A 84 DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAA 163 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHh
Confidence 9999888775 589999999975432 234566788999999999999986653 3 35899999987
Q ss_pred eeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHH
Q 011770 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSL 210 (478)
Q Consensus 132 v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~ 210 (478)
.+.+.. ....|+.||...+.+.+....+ + +..|+++.+++|+.|.++...... ......
T Consensus 164 ~~~~~~----------------~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~ 223 (277)
T 3tsc_A 164 GMKMQP----------------FMIHYTASKHAVTGLARAFAAE-L---GKHSIRVNSVHPGPVNTPMGSGDMVTAVGQA 223 (277)
T ss_dssp GTSCCS----------------SCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESSBSSGGGSHHHHHHHHHH
T ss_pred hCCCCC----------------CchhhHHHHHHHHHHHHHHHHH-h---CccCeEEEEEEeCCCcCCcccchhhhhhhhc
Confidence 642211 1267999999999998766532 1 136899999999999988543211 111111
Q ss_pred HHcCCC-CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 211 AKLGLV-PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 211 ~~~g~~-~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...... ......... ..+.+.+|+|++++.++... .....|+++++.+|.
T Consensus 224 ~~~~~~~~~~~~~~~p-~r~~~pedvA~~v~~L~s~~---------~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 224 METNPQLSHVLTPFLP-DWVAEPEDIADTVCWLASDE---------SRKVTAAQIPVDQGS 274 (277)
T ss_dssp HHTCGGGTTTTCCSSS-CSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTG
T ss_pred ccccHHHHHHhhhccC-CCCCCHHHHHHHHHHHhCcc---------ccCCcCCEEeeCCCc
Confidence 111110 001111111 24889999999999887631 224679999998874
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=188.49 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=147.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc----cCCCeEEEEecCCCHHHHHHHhc--
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL----INHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~----~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
|.++++|++|||||+|+||++++++|+++|++ |++++|+....... .. ....+.++.+|++|.++++++++
T Consensus 27 m~~l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 105 (279)
T 1xg5_A 27 MERWRDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 105 (279)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 34467899999999999999999999999998 99999865321100 00 12357889999999999888776
Q ss_pred -----CcCEEEEcccCCCCch----hhhchhhhhHhhhHH----HHHHHHHHHHcCC--CeEEEEeccceeeCCccccCC
Q 011770 78 -----GVDCVFHVASYGMSGK----EMLQFGRVDEVNING----TCHVIEACLEFGI--QRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~g----t~nll~aa~~~~v--~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|+|||+||...... ...+.+..+++|+.| ++++++.+++.++ +++|++||...+ ..
T Consensus 106 ~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~-~~------ 178 (279)
T 1xg5_A 106 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH-RV------ 178 (279)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT-SC------
T ss_pred HHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhc-cc------
Confidence 7999999999653321 334567889999999 7778888888876 799999998763 11
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCC
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~ 222 (478)
.+.. ....|+.||...|.+++.+..+ +.. ...++++++++|+.|.++................
T Consensus 179 ---~~~~----~~~~Y~~sK~a~~~~~~~la~e-~~~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-------- 241 (279)
T 1xg5_A 179 ---LPLS----VTHFYSATKYAVTALTEGLRQE-LRE-AQTHIRATCISPGVVETQFAFKLHDKDPEKAAAT-------- 241 (279)
T ss_dssp ---CSCG----GGHHHHHHHHHHHHHHHHHHHH-HHH-TTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHH--------
T ss_pred ---CCCC----CCchhHHHHHHHHHHHHHHHHH-Hhh-cCCCeEEEEEecCcccchhhhhhcccChhHHhhh--------
Confidence 0111 1267999999999888765421 100 0368999999999998873110000000000000
Q ss_pred CCccccceeHHHHHHHHHHHHh
Q 011770 223 PSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.....+++++|+|++++.++.
T Consensus 242 -~~~~~~~~~~dvA~~i~~l~~ 262 (279)
T 1xg5_A 242 -YEQMKCLKPEDVAEAVIYVLS 262 (279)
T ss_dssp -HC---CBCHHHHHHHHHHHHH
T ss_pred -cccccCCCHHHHHHHHHHHhc
Confidence 011247899999999999887
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=189.23 Aligned_cols=225 Identities=18% Similarity=0.165 Sum_probs=160.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc----ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL----LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~----~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.++++|+++||||+|+||++++++|+++|++ |++++|+........ .....+.++.+|++|.++++++++
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAH-VILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4577899999999999999999999999998 999999765432111 124568999999999988888775
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+||...... +..+.+..+++|+.|+.++++++. +.+..++|++||...+.+ .
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~------------~ 175 (275)
T 4imr_A 108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRP------------K 175 (275)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------C
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCC------------C
Confidence 6899999999654322 334567789999999999999984 345679999999876321 1
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH---HHHHHHHHcCCCCeeeCCCCc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL---PRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~---~~~i~~~~~g~~~~~~g~g~~ 225 (478)
.+ ...|+.||...+.+.+....+ + +..|+++.+++|+.|..+...... +........... .
T Consensus 176 ~~----~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--------p 239 (275)
T 4imr_A 176 SV----VTAYAATKAAQHNLIQSQARD-F---AGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLN--------W 239 (275)
T ss_dssp TT----BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHS--------T
T ss_pred CC----chhhHHHHHHHHHHHHHHHHH-h---cccCcEEEEEEeccccCcccccccccChHHHHHHHhhcC--------c
Confidence 11 256999999999988766432 1 136899999999999876322110 111111111110 1
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+...+|+|++++.++... .....|+++++.+|
T Consensus 240 ~~r~~~pedvA~~v~fL~s~~---------a~~itG~~i~vdGG 274 (275)
T 4imr_A 240 MGRAGRPEEMVGAALFLASEA---------CSFMTGETIFLTGG 274 (275)
T ss_dssp TCSCBCGGGGHHHHHHHHSGG---------GTTCCSCEEEESSC
T ss_pred cCCCcCHHHHHHHHHHHcCcc---------cCCCCCCEEEeCCC
Confidence 123556889999999887621 22467999999776
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-21 Score=184.18 Aligned_cols=222 Identities=17% Similarity=0.079 Sum_probs=155.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|+++||||+|+||++++++|+++|++ |++.+++....... ......+.++++|++|.++++++++
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFT-VVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999998 98886655422111 1123568899999999999888776
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
++|++||+||...... +..+.+..+++|+.|+.++++++.+.- -.++|++||.....+.+
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 170 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHP------------- 170 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCT-------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCC-------------
Confidence 6899999999754322 233466788899999999999988752 24899999987643211
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-HHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-LPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
....|+.||...|.+.+....+ + +..|+++.+++|+.|..+..... .......+... .....+
T Consensus 171 ---~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---------~p~~r~ 234 (267)
T 3u5t_A 171 ---SYGIYAAAKAGVEAMTHVLSKE-L---RGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKL---------APLERL 234 (267)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHH-T---TTSCCEEEEEEECCBC-----------CHHHHHTS---------STTCSC
T ss_pred ---CchHHHHHHHHHHHHHHHHHHH-h---hhhCCEEEEEEECCCcCccccccCCHHHHHHHHhc---------CCCCCC
Confidence 1257999999999999876532 1 24689999999999988743211 11111222222 223457
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...+|+|++++.++.. ......|+++++.+|
T Consensus 235 ~~pedvA~~v~~L~s~---------~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 235 GTPQDIAGAVAFLAGP---------DGAWVNGQVLRANGG 265 (267)
T ss_dssp BCHHHHHHHHHHHHST---------TTTTCCSEEEEESSS
T ss_pred cCHHHHHHHHHHHhCc---------cccCccCCEEEeCCC
Confidence 7899999999988752 123467899999776
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=187.01 Aligned_cols=201 Identities=15% Similarity=0.107 Sum_probs=148.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++++|+|+||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.++++++++
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 105 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 105 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999998 99999875421110 0113468999999999999888775
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++. +.+.+++|++||..++.+..
T Consensus 106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 175 (272)
T 1yb1_A 106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVP---------- 175 (272)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHH----------
T ss_pred CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCC----------
Confidence 789999999975432 1234556788999999888777765 45678999999988743211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
....|+.||...|.+++.+..+ +...+..+++++++||+.+.++...... ....
T Consensus 176 ------~~~~Y~~sK~a~~~l~~~la~e-~~~~~~~gi~v~~v~Pg~v~t~~~~~~~-------------------~~~~ 229 (272)
T 1yb1_A 176 ------FLLAYCSSKFAAVGFHKTLTDE-LAALQITGVKTTCLCPNFVNTGFIKNPS-------------------TSLG 229 (272)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHH-HHHTTCTTEEEEEEEETHHHHCSTTCTH-------------------HHHC
T ss_pred ------CchhHHHHHHHHHHHHHHHHHH-HHHhCCCCeEEEEEeCCcccCCcccccc-------------------cccc
Confidence 1257999999999998766431 1000035899999999999887532100 0123
Q ss_pred cceeHHHHHHHHHHHHh
Q 011770 228 DWIYVDNLVLALILASM 244 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~ 244 (478)
.+++.+|+|++++.++.
T Consensus 230 ~~~~~~dva~~i~~~~~ 246 (272)
T 1yb1_A 230 PTLEPEEVVNRLMHGIL 246 (272)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57889999999999987
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=185.41 Aligned_cols=223 Identities=19% Similarity=0.205 Sum_probs=155.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++|+++||||+|+||++++++|+++|++ |++++|+....... . ....++.++++|++|.++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999998 99999875321100 0 113468899999999998887765
Q ss_pred -CcCEEEEcccCC-CCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYG-MSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~-~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|+|||+||.. ... .+..+++..+++|+.|+.++++++.+. +..++|++||...+.+..
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 152 (262)
T 1zem_A 83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP---------- 152 (262)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT----------
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC----------
Confidence 789999999965 221 133456788899999999999988764 567999999987743211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH---------------HH-HHHHH
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL---------------PR-IVSLA 211 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~---------------~~-~i~~~ 211 (478)
....|+.||...+.+.+....+ + ...|+++++++|+.|..+...... +. ....+
T Consensus 153 ------~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (262)
T 1zem_A 153 ------NMAAYGTSKGAIIALTETAALD-L---APYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQM 222 (262)
T ss_dssp ------TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHH
T ss_pred ------CCchHHHHHHHHHHHHHHHHHH-H---HhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHH
Confidence 1257999999998888765421 1 146899999999998766311100 01 11111
Q ss_pred HcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 212 KLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 212 ~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.... ....+...+|+|++++.++... .....|+.+.+.+|
T Consensus 223 ~~~~---------p~~r~~~p~dvA~~v~~l~s~~---------~~~itG~~i~vdGG 262 (262)
T 1zem_A 223 IGSV---------PMRRYGDINEIPGVVAFLLGDD---------SSFMTGVNLPIAGG 262 (262)
T ss_dssp HHTS---------TTSSCBCGGGSHHHHHHHHSGG---------GTTCCSCEEEESCC
T ss_pred HhcC---------CCCCCcCHHHHHHHHHHHcCch---------hcCcCCcEEecCCC
Confidence 1111 1123667899999998887521 12457888887654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=174.97 Aligned_cols=212 Identities=17% Similarity=0.064 Sum_probs=155.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
||+++||||+|+||++++++|+++|++ |++.+|+....... ......+.++++|++|.+++.++++ +
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYA-LALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD 80 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999 99999875421110 0224578899999999999999887 6
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
+|++||+||...... +..+.+..+++|+.|+.++++++.+. +..++|++||.....+. |.
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~-------------~~ 147 (235)
T 3l77_A 81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLI-------------PY 147 (235)
T ss_dssp CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCC-------------TT
T ss_pred CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccC-------------CC
Confidence 899999999754332 44567788999999999999998753 33578888887653221 11
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||...|.+++.+.. ...++++++++|+.|..+..... . .......++.
T Consensus 148 ---~~~Y~~sKaa~~~~~~~l~~------~~~~i~v~~v~PG~v~T~~~~~~----------------~-~~~~~~~~~~ 201 (235)
T 3l77_A 148 ---GGGYVSTKWAARALVRTFQI------ENPDVRFFELRPGAVDTYFGGSK----------------P-GKPKEKGYLK 201 (235)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH------HCTTSEEEEEEECSBSSSTTTCC----------------S-CCCGGGTCBC
T ss_pred ---cchHHHHHHHHHHHHHHHhh------cCCCeEEEEEeCCcccccccccc----------------C-CcccccCCCC
Confidence 25799999999999987632 14689999999999977642210 0 0112236789
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.+|+|++++.++... .....|+......+++
T Consensus 202 p~dva~~v~~l~~~~---------~~~~~~~~~~~~~~~~ 232 (235)
T 3l77_A 202 PDEIAEAVRCLLKLP---------KDVRVEELMLRSVYQR 232 (235)
T ss_dssp HHHHHHHHHHHHTSC---------TTCCCCEEEECCTTSC
T ss_pred HHHHHHHHHHHHcCC---------CCCccceEEEeecccC
Confidence 999999999998731 2234566655555543
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=181.31 Aligned_cols=221 Identities=12% Similarity=0.081 Sum_probs=156.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
+|+++||||+|+||++++++|+++| +. |++.+|+....... .....++.++++|++|.++++++++ ++|
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 80 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTV-VYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKID 80 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCE-EEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeE-EEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCcc
Confidence 5899999999999999999999986 56 88887764321110 1113468899999999999888776 689
Q ss_pred EEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 81 CVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 81 ~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
++||+||.... ..+..+++..+++|+.|+.++.+++ ++.+ .++|++||...+.+.. +
T Consensus 81 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~~------------~- 146 (254)
T 3kzv_A 81 SLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYFS------------S- 146 (254)
T ss_dssp EEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSSC------------C-
T ss_pred EEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCCC------------C-
Confidence 99999997432 1234456788999999999999998 4455 6999999987642211 1
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---------HHHHHHHHHcCCCCeeeCC
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---------LPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---------~~~~i~~~~~g~~~~~~g~ 222 (478)
...|+.||...|.+.+....+ ..++++.+++|+.|.++..... -+.....+....
T Consensus 147 ---~~~Y~asK~a~~~~~~~la~e------~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 210 (254)
T 3kzv_A 147 ---WGAYGSSKAALNHFAMTLANE------ERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLK------- 210 (254)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHH------CTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHH-------
T ss_pred ---cchHHHHHHHHHHHHHHHHhh------ccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHH-------
Confidence 267999999999999877642 3589999999999998854321 122222222211
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
....+.+.+|+|++++.++.... .....|+.+++.+++..
T Consensus 211 --~~~r~~~p~dva~~v~~L~s~~~--------~~~itG~~i~vdg~~~~ 250 (254)
T 3kzv_A 211 --ENNQLLDSSVPATVYAKLALHGI--------PDGVNGQYLSYNDPALA 250 (254)
T ss_dssp --TTC----CHHHHHHHHHHHHHCC--------CGGGTTCEEETTCGGGG
T ss_pred --hcCCcCCcccHHHHHHHHHhhcc--------cCCCCccEEEecCcccc
Confidence 12346788999999998876310 12467899998876543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-21 Score=182.64 Aligned_cols=201 Identities=14% Similarity=0.080 Sum_probs=143.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
|..+++|+||||||+|+||++++++|+++|++ |++++|+....... ......++++.+|++|.+++.++++
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999 99999875421110 1123568899999999999888775
Q ss_pred ---CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|+|||+||.... ..+..+.+..+++|+.|+.++++++.. .+..++|++||...+.+..
T Consensus 103 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 174 (262)
T 3rkr_A 103 AHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVA-------- 174 (262)
T ss_dssp HHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCT--------
T ss_pred hcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCC--------
Confidence 58999999997321 123345677899999999999998764 4667999999987642211
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCc
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
+ ...|+.||...|.+++.+..+ + ...|+++.+++|+.|..+...... . ...
T Consensus 175 ----~----~~~Y~asKaa~~~l~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~--------~---------~~~ 225 (262)
T 3rkr_A 175 ----D----GAAYTASKWGLNGLMTSAAEE-L---RQHQVRVSLVAPGSVRTEFGVGLS--------A---------KKS 225 (262)
T ss_dssp ----T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCC------------------------------
T ss_pred ----C----CchHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEecCCCcCCcccccc--------c---------ccc
Confidence 1 267999999999998766431 1 146899999999999776322110 0 012
Q ss_pred cccceeHHHHHHHHHHHHh
Q 011770 226 KTDWIYVDNLVLALILASM 244 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~ 244 (478)
...++..+|+|+++..++.
T Consensus 226 ~~~~~~p~dvA~~v~~l~s 244 (262)
T 3rkr_A 226 ALGAIEPDDIADVVALLAT 244 (262)
T ss_dssp ---CCCHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHhc
Confidence 2346789999999998886
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=183.87 Aligned_cols=228 Identities=14% Similarity=0.070 Sum_probs=162.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c----ccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L----LINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~----~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
+++++|+++||||+|.||++++++|+++|++ |++++|+....... . ....++.++++|++|.++++++++
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 4577899999999999999999999999999 99999875421110 0 112248899999999999887765
Q ss_pred ----CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ----GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+||..... .+..+++..+++|+.|+.++.+++.+. +..++|++||...+.+..
T Consensus 83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 154 (265)
T 3lf2_A 83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEP-------- 154 (265)
T ss_dssp HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCT--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCC--------
Confidence 689999999975432 234566788999999999999998653 345899999987642211
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC----------cHHHHHHHHHcCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER----------HLPRIVSLAKLGL 215 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~----------~~~~~i~~~~~g~ 215 (478)
....|+.||...+.+.+....+ + +..|+++.+++|+.|.+|.... ....+...+....
T Consensus 155 --------~~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (265)
T 3lf2_A 155 --------HMVATSAARAGVKNLVRSMAFE-F---APKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNK 222 (265)
T ss_dssp --------TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHT
T ss_pred --------CchhhHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhcc
Confidence 1267999999999988766432 1 1468999999999998863211 0111111111110
Q ss_pred CCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 216 VPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 216 ~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
. .....+...+|+|++++.++... .....|+++++.+|..
T Consensus 223 ~-------~p~~r~~~pedvA~~v~fL~s~~---------~~~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 223 Q-------IPLGRLGKPIEAARAILFLASPL---------SAYTTGSHIDVSGGLS 262 (265)
T ss_dssp T-------CTTCSCBCHHHHHHHHHHHHSGG---------GTTCCSEEEEESSSCC
T ss_pred C-------CCcCCCcCHHHHHHHHHHHhCch---------hcCcCCCEEEECCCCc
Confidence 0 12235778999999999887621 2246799999988754
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=179.15 Aligned_cols=226 Identities=16% Similarity=0.125 Sum_probs=166.1
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 8 GIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 8 ~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
++++|+++||||+ |+||.+++++|+++|++ |++++++....... .....++.++++|++|.++++++++
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAA-VAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCE-EEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence 4678999999999 99999999999999999 99998876542111 0124578899999999999888775
Q ss_pred -----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCC
Q 011770 78 -----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+||...... +..+.+..+++|+.|+.++++++ ++.+..++|++||...+++..+
T Consensus 96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 169 (267)
T 3gdg_A 96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFP------ 169 (267)
T ss_dssp HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSS------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCC------
Confidence 5799999999754322 34566788999999999999998 4456679999999876432110
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
.....|+.||...|.+++.+..+ +. .. +++.++.|+.|..+......+..........
T Consensus 170 --------~~~~~Y~~sK~a~~~~~~~la~e-~~---~~-i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~--------- 227 (267)
T 3gdg_A 170 --------QEQTSYNVAKAGCIHMARSLANE-WR---DF-ARVNSISPGYIDTGLSDFVPKETQQLWHSMI--------- 227 (267)
T ss_dssp --------SCCHHHHHHHHHHHHHHHHHHHH-TT---TT-CEEEEEEECCEECSCGGGSCHHHHHHHHTTS---------
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHH-hc---cC-cEEEEEECCccccchhhhCCHHHHHHHHhcC---------
Confidence 01267999999999999876542 11 23 8999999999988754433333333333322
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
....+.+.+|+|++++.++.. ......|+.+++.+|..
T Consensus 228 ~~~r~~~~~dva~~~~~l~s~---------~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 228 PMGRDGLAKELKGAYVYFASD---------ASTYTTGADLLIDGGYT 265 (267)
T ss_dssp TTSSCEETHHHHHHHHHHHST---------TCTTCCSCEEEESTTGG
T ss_pred CCCCCcCHHHHHhHhheeecC---------ccccccCCEEEECCcee
Confidence 234677899999999988752 12356799999988754
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=187.11 Aligned_cols=224 Identities=12% Similarity=0.001 Sum_probs=161.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEe-cCCCCccc--cc---ccCCCeEEEEecCCCHH------------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWS--HL---LINHGVHCIQGDVVSKI------------ 70 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~-r~~~~~~~--~~---~~~~~v~~v~gDl~d~~------------ 70 (478)
+++|++|||||+|+||++++++|+++|++ |++++ |+...... .. ....++.++++|++|.+
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~-Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 122 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 122 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence 66789999999999999999999999998 99999 65432110 00 11346889999999998
Q ss_pred -----HHHHHhc-------CcCEEEEcccCCCCch----h--------------hhchhhhhHhhhHHHHHHHHHHHH--
Q 011770 71 -----DVEKAAR-------GVDCVFHVASYGMSGK----E--------------MLQFGRVDEVNINGTCHVIEACLE-- 118 (478)
Q Consensus 71 -----~l~~~l~-------~~D~ViHlAa~~~~~~----~--------------~~~~~~~~~vNv~gt~nll~aa~~-- 118 (478)
+++++++ ++|+|||+||...... + ..+.+..+++|+.|+.++++++.+
T Consensus 123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m 202 (328)
T 2qhx_A 123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 202 (328)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887775 7899999999643221 1 345567889999999999998874
Q ss_pred --cC------CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEE
Q 011770 119 --FG------IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAV 190 (478)
Q Consensus 119 --~~------v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~il 190 (478)
.+ ..++|++||...+.+. | ....|+.||...+.+.+....+ + ...|++++++
T Consensus 203 ~~~~~~~~~~~g~IV~isS~~~~~~~-------------~---~~~~Y~asKaal~~l~~~la~e-l---~~~gIrvn~v 262 (328)
T 2qhx_A 203 AGTPAKHRGTNYSIINMVDAMTNQPL-------------L---GYTIYTMAKGALEGLTRSAALE-L---APLQIRVNGV 262 (328)
T ss_dssp HHSCGGGSCSCEEEEEECCTTTTSCC-------------T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEE
T ss_pred HhcCCcCCCCCcEEEEECchhhccCC-------------C---CcHHHHHHHHHHHHHHHHHHHH-H---hhcCcEEEEE
Confidence 24 5799999998763211 1 1257999999999998766432 1 1368999999
Q ss_pred eCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 191 RPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 191 Rp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+|+.|.++. .. .+.....+....+. + ..+...+|+|++++.++... .....|+.+++.+|.
T Consensus 263 ~PG~v~T~~-~~-~~~~~~~~~~~~p~---~-----~r~~~pedvA~~v~~l~s~~---------~~~itG~~i~vdGG~ 323 (328)
T 2qhx_A 263 GPGLSVLVD-DM-PPAVWEGHRSKVPL---Y-----QRDSSAAEVSDVVIFLCSSK---------AKYITGTCVKVDGGY 323 (328)
T ss_dssp EESSBSCCC-CS-CHHHHHHHHTTCTT---T-----TSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTG
T ss_pred ecCcccCCc-cc-cHHHHHHHHhhCCC---C-----CCCCCHHHHHHHHHHHhCcc---------ccCccCcEEEECCCc
Confidence 999999987 33 24433333332211 1 03667999999999888521 224678999998875
Q ss_pred CC
Q 011770 271 PI 272 (478)
Q Consensus 271 ~~ 272 (478)
.+
T Consensus 324 ~~ 325 (328)
T 2qhx_A 324 SL 325 (328)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=181.19 Aligned_cols=224 Identities=14% Similarity=0.060 Sum_probs=159.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC-CCccc--cc---ccCCCeEEEEecCCC----HHHHHHHh
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT-NSPWS--HL---LINHGVHCIQGDVVS----KIDVEKAA 76 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~-~~~~~--~~---~~~~~v~~v~gDl~d----~~~l~~~l 76 (478)
.++++|+++||||+|+||++++++|+++|++ |++++|+. ..... .. .....+.++++|++| .+++++++
T Consensus 19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~ 97 (288)
T 2x9g_A 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYR-VVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEII 97 (288)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHHTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHH
Confidence 3467899999999999999999999999998 99999876 31100 00 123468899999999 88888776
Q ss_pred c-------CcCEEEEcccCCCCc--------------hhhhchhhhhHhhhHHHHHHHHHHHHcC----------CCeEE
Q 011770 77 R-------GVDCVFHVASYGMSG--------------KEMLQFGRVDEVNINGTCHVIEACLEFG----------IQRLV 125 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~--------------~~~~~~~~~~~vNv~gt~nll~aa~~~~----------v~r~V 125 (478)
+ ++|+|||+||..... ....+.+..+++|+.|+.++.+++.+.- ..++|
T Consensus 98 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv 177 (288)
T 2x9g_A 98 NSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIV 177 (288)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEE
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEE
Confidence 5 789999999964321 2234556788999999999999987642 35899
Q ss_pred EEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH
Q 011770 126 YVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP 205 (478)
Q Consensus 126 ~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~ 205 (478)
++||...+.+. .+ ...|+.||...+.+.+....+ + ...|+++++++|+.|+++. .. .+
T Consensus 178 ~isS~~~~~~~------------~~----~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~t~~-~~-~~ 235 (288)
T 2x9g_A 178 NLCDAMVDQPC------------MA----FSLYNMGKHALVGLTQSAALE-L---APYGIRVNGVAPGVSLLPV-AM-GE 235 (288)
T ss_dssp EECCTTTTSCC------------TT----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESSCSCCT-TS-CH
T ss_pred EEecccccCCC------------CC----CchHHHHHHHHHHHHHHHHHH-h---hccCeEEEEEEeccccCcc-cc-Ch
Confidence 99998763211 11 267999999999888765431 1 1358999999999999997 32 12
Q ss_pred HHHHHHHcCCCCeeeCCCCccccc-eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 206 RIVSLAKLGLVPFKIGEPSVKTDW-IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 206 ~~i~~~~~g~~~~~~g~g~~~~~~-v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.....+....+. ..+ ...+|+|++++.++... .....|+.+++.+|..
T Consensus 236 ~~~~~~~~~~p~---------~r~~~~pedvA~~v~~l~s~~---------~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 236 EEKDKWRRKVPL---------GRREASAEQIADAVIFLVSGS---------AQYITGSIIKVDGGLS 284 (288)
T ss_dssp HHHHHHHHTCTT---------TSSCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred HHHHHHHhhCCC---------CCCCCCHHHHHHHHHHHhCcc---------ccCccCCEEEECcchh
Confidence 222222222211 124 67899999999888631 2246788999987753
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-21 Score=184.57 Aligned_cols=209 Identities=15% Similarity=0.113 Sum_probs=141.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
|..+++|++|||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|.++++++++
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 101 (272)
T 4dyv_A 23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYG-VALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFG 101 (272)
T ss_dssp -----CCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 44567889999999999999999999999998 99999875421111 1123578899999999999988876
Q ss_pred CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHc----C--CCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEF----G--IQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~----~--v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|+|||+||..... .+..+++..+++|+.|+.++.+++.+. + -.++|++||...+.+..
T Consensus 102 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~--------- 172 (272)
T 4dyv_A 102 RVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRP--------- 172 (272)
T ss_dssp CCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCT---------
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCC---------
Confidence 789999999975321 234456788999999999998887654 2 35899999987642211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
+ ...|+.||...|.+.+....+ + +..++++.+++|+.|..+......... .... .....
T Consensus 173 ---~----~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~--------~~~~--~~~~~ 231 (272)
T 4dyv_A 173 ---Y----SAPYTATKHAITGLTKSTSLD-G---RVHDIACGQIDIGNADTPMAQKMKAGV--------PQAD--LSIKV 231 (272)
T ss_dssp ---T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEEEECC------------------------------
T ss_pred ---C----chHHHHHHHHHHHHHHHHHHH-h---CccCEEEEEEEECcccChhhhhhcccc--------hhhh--hcccc
Confidence 1 267999999999998766432 1 146899999999999887533211110 0000 01122
Q ss_pred ccceeHHHHHHHHHHHHhc
Q 011770 227 TDWIYVDNLVLALILASMG 245 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~ 245 (478)
..+.+++|+|++++.++..
T Consensus 232 ~~~~~pedvA~~v~fL~s~ 250 (272)
T 4dyv_A 232 EPVMDVAHVASAVVYMASL 250 (272)
T ss_dssp ----CHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHhCC
Confidence 3478999999999999873
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=185.47 Aligned_cols=222 Identities=13% Similarity=0.078 Sum_probs=159.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCC---ceEEEEecCCCCccccc--c----cCCCeEEEEecCCCHHHHHHHhc-
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGA---YQVRAFDLRTNSPWSHL--L----INHGVHCIQGDVVSKIDVEKAAR- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~---~~V~~l~r~~~~~~~~~--~----~~~~v~~v~gDl~d~~~l~~~l~- 77 (478)
.+++|++|||||+|+||++++++|+++|+ + |++.+|+........ . ....+.++++|++|.++++++++
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMK-LILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCce-EEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 35789999999999999999999999988 7 999988754211100 0 13468899999999999998886
Q ss_pred ------CcCEEEEcccCCCC-----chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCC
Q 011770 78 ------GVDCVFHVASYGMS-----GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 ------~~D~ViHlAa~~~~-----~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|+|||+||.... ..+..+++..+++|+.|+.++++++. +.+..++|++||...+.+..
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~----- 183 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYP----- 183 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-----
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCC-----
Confidence 57999999996431 12345678899999999999999984 45667999999987642211
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC----CcHHHHHHHHHcCCCCe
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE----RHLPRIVSLAKLGLVPF 218 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~----~~~~~~i~~~~~g~~~~ 218 (478)
+ ...|+.||...+.+.+....+ + ...|+++.+++|+.|..+... .......... ..
T Consensus 184 -------~----~~~Y~asKaa~~~l~~~la~e-~---~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~-~~---- 243 (287)
T 3rku_A 184 -------T----GSIYCASKFAVGAFTDSLRKE-L---INTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVY-KD---- 243 (287)
T ss_dssp -------T----CHHHHHHHHHHHHHHHHHHHH-T---TTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHH-TT----
T ss_pred -------C----CchHHHHHHHHHHHHHHHHHH-h---hhcCCEEEEEeCCcCcCccccccccCcHHHHHHhh-cc----
Confidence 1 267999999999998776532 1 247999999999999887310 0011111111 11
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
..++..+|+|++++.++.. ......|+++++.+|++.
T Consensus 244 --------~~p~~pedvA~~v~~l~s~---------~~~~i~g~~i~v~~g~~~ 280 (287)
T 3rku_A 244 --------TTPLMADDVADLIVYATSR---------KQNTVIADTLIFPTNQAS 280 (287)
T ss_dssp --------SCCEEHHHHHHHHHHHHTS---------CTTEEEEEEEEEETTEEE
T ss_pred --------cCCCCHHHHHHHHHHHhCC---------CCCeEecceEEeeCCCCC
Confidence 1234899999999998863 122356888888877653
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=178.35 Aligned_cols=225 Identities=18% Similarity=0.144 Sum_probs=161.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhcC----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAARG---- 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~~---- 78 (478)
.+++|+++||||+|+||++++++|+++|++ |+++++++...... ......+.++.+|++|.++++++++.
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNE 82 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999998 98875554422111 11234678899999999988877652
Q ss_pred ---------cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCC
Q 011770 79 ---------VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 79 ---------~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
+|++||+||...... +..+.+..+++|+.|+.++++++.+. +..++|++||...+.+.+
T Consensus 83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~------ 156 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLP------ 156 (255)
T ss_dssp HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCT------
T ss_pred hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCC------
Confidence 899999999754332 23345678899999999999999875 335899999987642211
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g 221 (478)
....|+.||...+.+++....+ + ...++++.+++|+.|..+...... +..........
T Consensus 157 ----------~~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~------ 216 (255)
T 3icc_A 157 ----------DFIAYSMTKGAINTMTFTLAKQ-L---GARGITVNAILPGFVKTDMNAELLSDPMMKQYATTIS------ 216 (255)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTS------
T ss_pred ----------CcchhHHhHHHHHHHHHHHHHH-H---HhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccC------
Confidence 1267999999999988766431 1 136899999999999988654321 12222222222
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
....+.+.+|+|++++.++... .....|+++++.+|..
T Consensus 217 ---~~~~~~~~~dva~~~~~l~s~~---------~~~~tG~~i~vdgG~~ 254 (255)
T 3icc_A 217 ---AFNRLGEVEDIADTAAFLASPD---------SRWVTGQLIDVSGGSC 254 (255)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEESSSTT
T ss_pred ---CcCCCCCHHHHHHHHHHHhCcc---------cCCccCCEEEecCCee
Confidence 2235678999999998877521 2346799999988753
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=178.94 Aligned_cols=206 Identities=17% Similarity=0.182 Sum_probs=147.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c--ccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L--LINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~--~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
.+++|+++||||+|+||++++++|+++|++ |++++|+....... . ....++.++.+|++|.++++++++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAA-VAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 367789999999999999999999999998 99999875421100 0 113468899999999999888775
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++.+ .+ .++|++||...+.+.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------------ 149 (247)
T 2jah_A 83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNV------------ 149 (247)
T ss_dssp SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCC------------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCC------------
Confidence 789999999965332 13345677899999999999998864 35 799999998763221
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCCCccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
| ....|+.||...+.+.+....+ + ...|+++++++|+.|.++...... ......... .++ ..
T Consensus 150 -~---~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~-----~~~----~~ 212 (247)
T 2jah_A 150 -R---NAAVYQATKFGVNAFSETLRQE-V---TERGVRVVVIEPGTTDTELRGHITHTATKEMYEQ-----RIS----QI 212 (247)
T ss_dssp -T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHH-----HTT----TS
T ss_pred -C---CCcHHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEECCCCCCcchhcccchhhHHHHHh-----ccc----cc
Confidence 1 1257999999999888765421 1 146899999999999887432211 111111111 001 11
Q ss_pred cceeHHHHHHHHHHHHh
Q 011770 228 DWIYVDNLVLALILASM 244 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~ 244 (478)
.+...+|+|++++.++.
T Consensus 213 ~~~~pedvA~~v~~l~s 229 (247)
T 2jah_A 213 RKLQAQDIAEAVRYAVT 229 (247)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 25789999999998886
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=180.79 Aligned_cols=228 Identities=12% Similarity=-0.002 Sum_probs=159.7
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEe-cCCCCccc--cc---ccCCCeEEEEecCCCHH--------
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWS--HL---LINHGVHCIQGDVVSKI-------- 70 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~-r~~~~~~~--~~---~~~~~v~~v~gDl~d~~-------- 70 (478)
.|+++++|+++||||+|+||++++++|+++|++ |++++ |+...... .. ....++.++++|++|.+
T Consensus 3 ~m~~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (291)
T 1e7w_A 3 HMTAPTVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGAD 81 (291)
T ss_dssp -----CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC---
T ss_pred CccCCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccc
Confidence 345577899999999999999999999999998 99999 76432110 00 11346889999999998
Q ss_pred ---------HHHHHhc-------CcCEEEEcccCCCCch----h--------------hhchhhhhHhhhHHHHHHHHHH
Q 011770 71 ---------DVEKAAR-------GVDCVFHVASYGMSGK----E--------------MLQFGRVDEVNINGTCHVIEAC 116 (478)
Q Consensus 71 ---------~l~~~l~-------~~D~ViHlAa~~~~~~----~--------------~~~~~~~~~vNv~gt~nll~aa 116 (478)
++.++++ ++|++||+||...... + ..+.+..+++|+.|+.++++++
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 161 (291)
T 1e7w_A 82 GSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAF 161 (291)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 8887775 7899999999643221 2 4456778899999999999998
Q ss_pred HHc----C------CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcce
Q 011770 117 LEF----G------IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLY 186 (478)
Q Consensus 117 ~~~----~------v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~ 186 (478)
.+. + ..++|++||...+.+. | ....|+.||...+.+.+....+ + ...+++
T Consensus 162 ~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~-------------~---~~~~Y~asKaa~~~l~~~la~e-~---~~~gI~ 221 (291)
T 1e7w_A 162 AHRVAGTPAKHRGTNYSIINMVDAMTNQPL-------------L---GYTIYTMAKGALEGLTRSAALE-L---APLQIR 221 (291)
T ss_dssp HHHHHTSCGGGSCSCEEEEEECCTTTTSCC-------------T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEE
T ss_pred HHHHHhcCCCCCCCCcEEEEEechhhcCCC-------------C---CCchhHHHHHHHHHHHHHHHHH-H---HhcCeE
Confidence 743 3 4689999998763221 1 1267999999999988766431 1 136899
Q ss_pred EEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEe
Q 011770 187 TCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFV 266 (478)
Q Consensus 187 ~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni 266 (478)
+++++|+.|..+. . ..+.....+....+. + ..+...+|+|++++.++... .....|+.+++
T Consensus 222 vn~v~PG~v~T~~-~-~~~~~~~~~~~~~p~---~-----~r~~~pedvA~~v~~l~s~~---------~~~itG~~i~v 282 (291)
T 1e7w_A 222 VNGVGPGLSVLVD-D-MPPAVWEGHRSKVPL---Y-----QRDSSAAEVSDVVIFLCSSK---------AKYITGTCVKV 282 (291)
T ss_dssp EEEEEESSBCCGG-G-SCHHHHHHHHTTCTT---T-----TSCBCHHHHHHHHHHHHSGG---------GTTCCSCEEEE
T ss_pred EEEEeeCCccCCc-c-CCHHHHHHHHhhCCC---C-----CCCCCHHHHHHHHHHHhCCc---------ccCccCcEEEE
Confidence 9999999997775 2 113333333322211 1 03567999999999887521 22467889999
Q ss_pred cCCCCC
Q 011770 267 SDGFPI 272 (478)
Q Consensus 267 ~~g~~~ 272 (478)
.+|..+
T Consensus 283 dGG~~~ 288 (291)
T 1e7w_A 283 DGGYSL 288 (291)
T ss_dssp STTGGG
T ss_pred CCCccc
Confidence 877543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-21 Score=181.01 Aligned_cols=210 Identities=17% Similarity=0.131 Sum_probs=134.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHH---HHh---cCcCEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE---KAA---RGVDCV 82 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~---~~l---~~~D~V 82 (478)
+++|+++||||+|+||++++++|.+ |+. |++++|+..... ......++.++.+|++|.++.. +.+ .++|+|
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~-v~~~~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l 79 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHI-VYALGRNPEHLA-ALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTL 79 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSE-EEEEESCHHHHH-HHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEE
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCe-EEEEeCCHHHHH-HHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEE
Confidence 5678999999999999999999987 888 999988654221 1122457899999998875522 122 268999
Q ss_pred EEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 83 FHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 83 iHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
||+||...... +..+.+..+++|+.|+.++.+++.. .+ .++|++||...+.+.. .
T Consensus 80 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~----------------~ 142 (245)
T 3e9n_A 80 VHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPHP----------------G 142 (245)
T ss_dssp EECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC--------------------------
T ss_pred EECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCCC----------------C
Confidence 99999754322 3345678889999998888888753 34 6999999988743211 1
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
...|+.||...|.+++.+..+ + +..|+++.+++|+.|.++........ . +.......+++.+|
T Consensus 143 ~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~~~~~----~---------~~~~~~~~~~~p~d 205 (245)
T 3e9n_A 143 NTIYAASKHALRGLADAFRKE-E---ANNGIRVSTVSPGPTNTPMLQGLMDS----Q---------GTNFRPEIYIEPKE 205 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCC-----------------------------CCGGGSCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH-h---hhcCeEEEEEecCCccCchhhhhhhh----h---------hcccccccCCCHHH
Confidence 267999999999998776532 1 13689999999999998854321111 0 11112346889999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEec
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVS 267 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~ 267 (478)
+|++++.+++. ...+++||+.
T Consensus 206 vA~~i~~l~~~------------~~~~~~~~i~ 226 (245)
T 3e9n_A 206 IANAIRFVIDA------------GETTQITNVD 226 (245)
T ss_dssp HHHHHHHHHTS------------CTTEEEEEEE
T ss_pred HHHHHHHHHcC------------CCccceeeeE
Confidence 99999999873 2356788864
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-20 Score=173.60 Aligned_cols=218 Identities=14% Similarity=0.111 Sum_probs=150.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~Vi 83 (478)
|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.++++++++ ++|++|
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv 79 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILV 79 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 57999999999999999999999998 99999875421110 1112468899999999999998876 689999
Q ss_pred EcccCCC-C----chhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 84 HVASYGM-S----GKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 84 HlAa~~~-~----~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
|+||... . ..+..+++..+++|+.|+.++.+++. +.+..++|++||...+.+. .+
T Consensus 80 nnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------------~~---- 143 (248)
T 3asu_A 80 NNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPY------------AG---- 143 (248)
T ss_dssp ECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------------TT----
T ss_pred ECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCC------------CC----
Confidence 9999752 1 12334567889999999999999887 4566799999998763211 11
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeC-CCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYG-PGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyG-p~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
...|+.||...|.+.+....+ + ...|+++++++|+.|.| +........--.... . .. ....++..+
T Consensus 144 ~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~--~---~~----~~~~~~~p~ 210 (248)
T 3asu_A 144 GNVYGATKAFVRQFSLNLRTD-L---HGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAE--K---TY----QNTVALTPE 210 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-T---TTSCCEEEEEEECSBCC-------------------------------CCBCHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEeccccccCcchhhcccCchHHHH--H---HH----hccCCCCHH
Confidence 267999999999998765431 1 24689999999999995 432110000000000 0 00 112346899
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
|+|++++.++.. .....|+...+..+
T Consensus 211 dvA~~v~~l~s~----------~~~~~g~~i~v~~~ 236 (248)
T 3asu_A 211 DVSEAVWWVSTL----------PAHVNINTLEMMPV 236 (248)
T ss_dssp HHHHHHHHHHHS----------CTTCCCCEEEECCT
T ss_pred HHHHHHHHHhcC----------CccceeeEEEEccc
Confidence 999999988873 22456777776543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-20 Score=177.44 Aligned_cols=204 Identities=15% Similarity=0.083 Sum_probs=142.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++|++|||||+|+||++++++|+++|++ |++++|+....... ......+.++.+|++|.++++++++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAK-ILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999999999 99999875421110 1113467889999999999888775
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|++||+||...... +..+.+..+++|+.|+.++.+++.. .+..++|++||...+.+..
T Consensus 81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~------------ 148 (264)
T 3tfo_A 81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVP------------ 148 (264)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCC------------
Confidence 6899999999754322 3446678899999999998888754 4567999999987743211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
....|+.||...+.+.+....+ ..++++.+++|+.|..+........ ....... .....+
T Consensus 149 ----~~~~Y~asKaal~~l~~~la~e------~~gIrvn~v~PG~v~T~~~~~~~~~--------~~~~~~~--~~~~~~ 208 (264)
T 3tfo_A 149 ----TAAVYCATKFAVRAISDGLRQE------STNIRVTCVNPGVVESELAGTITHE--------ETMAAMD--TYRAIA 208 (264)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHH------CSSEEEEEEEECCC---------------------------------C
T ss_pred ----CChhHHHHHHHHHHHHHHHHHh------CCCCEEEEEecCCCcCcccccccch--------hHHHHHH--hhhccC
Confidence 1257999999999999877542 2489999999999987743221110 0000000 011124
Q ss_pred eeHHHHHHHHHHHHhc
Q 011770 230 IYVDNLVLALILASMG 245 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~ 245 (478)
...+|+|++++.++..
T Consensus 209 ~~pedvA~~v~~l~s~ 224 (264)
T 3tfo_A 209 LQPADIARAVRQVIEA 224 (264)
T ss_dssp CCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcC
Confidence 6899999999999873
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-20 Score=177.05 Aligned_cols=221 Identities=13% Similarity=0.089 Sum_probs=149.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc-cCCCeEEEEecCCCHHHHHHHhcC------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL-INHGVHCIQGDVVSKIDVEKAARG------ 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~-~~~~v~~v~gDl~d~~~l~~~l~~------ 78 (478)
.|+ |+++||||+|+||++++++|+++|++ |++++|+....... .. ...++.++++|++|.+++++++++
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 96 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGWS-LVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFA 96 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 344 89999999999999999999999998 99999875421110 00 113688999999999999998864
Q ss_pred -cCEEEEcccCCCC-c----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCC-eEEEEeccceeeCCccccCCCCCCC
Q 011770 79 -VDCVFHVASYGMS-G----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQ-RLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 79 -~D~ViHlAa~~~~-~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~-r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
+|+|||+||.... . .+..+.+..+++|+.|+.++.+++. +.+.. ++|++||...+.+.
T Consensus 97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~----------- 165 (272)
T 2nwq_A 97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPY----------- 165 (272)
T ss_dssp SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCC-----------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCC-----------
Confidence 5999999997532 1 1234567889999999888777765 45667 99999998763211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
| ....|+.||...|.+.+....+ + ...|+++++++|+.|.++........ . ......... ..
T Consensus 166 --~---~~~~Y~asKaa~~~l~~~la~e-l---~~~gIrvn~v~PG~v~T~~~~~~~~~---~--~~~~~~~~~----~~ 227 (272)
T 2nwq_A 166 --P---GSHVYGGTKAFVEQFSLNLRCD-L---QGTGVRVTNLEPGLCESEFSLVRFGG---D--QARYDKTYA----GA 227 (272)
T ss_dssp --T---TCHHHHHHHHHHHHHHHHHHTT-C---TTSCCEEEEEEECSBC-----------------------------CC
T ss_pred --C---CCchHHHHHHHHHHHHHHHHHH-h---CccCeEEEEEEcCCCcCcchhccccc---c--hHHHHHhhc----cC
Confidence 1 1257999999999999877542 2 24689999999999988743211100 0 000000000 11
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.++..+|+|++++.++.. .....|+.+.+.++
T Consensus 228 ~~~~pedvA~~v~~l~s~----------~~~~~g~~i~v~~~ 259 (272)
T 2nwq_A 228 HPIQPEDIAETIFWIMNQ----------PAHLNINSLEIMPV 259 (272)
T ss_dssp CCBCHHHHHHHHHHHHTS----------CTTEEEEEEEEEET
T ss_pred CCCCHHHHHHHHHHHhCC----------CccCccceEEEeec
Confidence 247899999999988862 22345666666544
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=175.30 Aligned_cols=196 Identities=21% Similarity=0.171 Sum_probs=142.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
.+|+++||||+|+||++++++|.++|++ |++++|+....... .....++.++.+|++|.++++++++ ++|+
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~ 80 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPEL 80 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcE
Confidence 4689999999999999999999999998 99999875421110 0112358999999999999888775 5799
Q ss_pred EEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcC---CCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 82 VFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFG---IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 82 ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~---v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
+||+||..... .+..+++..+++|+.|+.++++++...- -.++|++||...+.+.. .
T Consensus 81 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~----------------~ 144 (235)
T 3l6e_A 81 VLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKA----------------N 144 (235)
T ss_dssp EEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSCS----------------S
T ss_pred EEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCCC----------------C
Confidence 99999975332 2445677889999999999999986531 12899999987643211 1
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
...|+.||...+.+.+....+ + +..|+++.+++|+.|-.+..... .. .....+...+|
T Consensus 145 ~~~Y~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~--------~~----------~~~~~~~~ped 202 (235)
T 3l6e_A 145 ESLYCASKWGMRGFLESLRAE-L---KDSPLRLVNLYPSGIRSEFWDNT--------DH----------VDPSGFMTPED 202 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T---TTSSEEEEEEEEEEECCCC-----------------------------CBCHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-h---hccCCEEEEEeCCCccCcchhcc--------CC----------CCCcCCCCHHH
Confidence 257999999999998876532 1 24789999999999977642210 00 01125788999
Q ss_pred HHHHHHHHHh
Q 011770 235 LVLALILASM 244 (478)
Q Consensus 235 va~a~~~a~~ 244 (478)
+|++++.++.
T Consensus 203 vA~~v~~l~~ 212 (235)
T 3l6e_A 203 AAAYMLDALE 212 (235)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 9999998876
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-20 Score=174.03 Aligned_cols=196 Identities=15% Similarity=0.100 Sum_probs=140.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhcCc----CEEEEc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAARGV----DCVFHV 85 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~~~----D~ViHl 85 (478)
||++|||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|++|.++++++++.+ |+|||+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~ 79 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKA-TYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHS 79 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEe
Confidence 468999999999999999999999999 99999875421111 112356889999999999999998764 899999
Q ss_pred ccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcCCC---eEEEEeccceeeCCccccCCCCCCCCCCCCccCCch
Q 011770 86 ASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFGIQ---RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSY 158 (478)
Q Consensus 86 Aa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~v~---r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y 158 (478)
||...... +..+.+..+++|+.|+.++++++.+.-.+ ++|++||...+.+.. + ...|
T Consensus 80 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~------------~----~~~Y 143 (230)
T 3guy_A 80 AGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKA------------Q----ESTY 143 (230)
T ss_dssp CCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCT------------T----CHHH
T ss_pred CCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCC------------C----Cchh
Confidence 99654322 33456778899999999999998875322 899999987742211 1 2679
Q ss_pred HhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 159 GRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 159 ~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
+.||...+.+++....+ + +..|+++.+++|+.|..+.... ... ......+.+.+|+|++
T Consensus 144 ~asKaa~~~~~~~la~e-~---~~~gi~v~~v~PG~v~t~~~~~--------~~~---------~~~~~~~~~~~dvA~~ 202 (230)
T 3guy_A 144 CAVKWAVKGLIESVRLE-L---KGKPMKIIAVYPGGMATEFWET--------SGK---------SLDTSSFMSAEDAALM 202 (230)
T ss_dssp HHHHHHHHHHHHHHHHH-T---TTSSCEEEEEEECCC---------------------------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-H---HhcCeEEEEEECCcccChHHHh--------cCC---------CCCcccCCCHHHHHHH
Confidence 99999999998776532 1 2468999999999997763221 000 1123467899999999
Q ss_pred HHHHHh
Q 011770 239 LILASM 244 (478)
Q Consensus 239 ~~~a~~ 244 (478)
++.++.
T Consensus 203 i~~l~~ 208 (230)
T 3guy_A 203 IHGALA 208 (230)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 998875
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-20 Score=175.04 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=144.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc-------cCCCeEEEEecCCCHHHHHHHhc---
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-------INHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~-------~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
++++|++|||||+|+||++++++|+++|++ |++++|+......... ....+.++++|++|.++++++++
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYR-VVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCE-EEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 467889999999999999999999999998 9999987542111000 11568899999999999888775
Q ss_pred ----CcCEEEEcccCCCCc---hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 ----GVDCVFHVASYGMSG---KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~---~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+||..... .+..+.+..+++|+.|+.++++++.. .+..++|++||...+++..
T Consensus 83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 153 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFA--------- 153 (250)
T ss_dssp HHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------C---------
T ss_pred HhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCC---------
Confidence 689999999974322 23445678899999999999998843 4667999999987643211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
+ ...|+.||...+.+.+....+ + ...|+++.+++|+.|..+. .+.. +. ....
T Consensus 154 ---~----~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~T~~--------~~~~--~~-------~~~~ 205 (250)
T 3nyw_A 154 ---D----GGIYGSTKFALLGLAESLYRE-L---APLGIRVTTLCPGWVNTDM--------AKKA--GT-------PFKD 205 (250)
T ss_dssp ---C----TTHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESSBCSHH--------HHHT--TC-------CSCG
T ss_pred ---C----CcchHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEecCcccCch--------hhhc--CC-------Cccc
Confidence 1 267999999999988766432 1 1368999999999997651 1111 11 1123
Q ss_pred ccceeHHHHHHHHHHHHh
Q 011770 227 TDWIYVDNLVLALILASM 244 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~ 244 (478)
..+++.+|+|++++.++.
T Consensus 206 ~~~~~p~dva~~v~~l~s 223 (250)
T 3nyw_A 206 EEMIQPDDLLNTIRCLLN 223 (250)
T ss_dssp GGSBCHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHc
Confidence 458899999999999886
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=174.36 Aligned_cols=217 Identities=16% Similarity=0.122 Sum_probs=155.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----------ccccCCCeEEEEecCCCHHHHHHH
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----------HLLINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----------~~~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
+++++|+++||||+|.||++++++|+++|++ |++++|+...... ......++.++++|++|.++++++
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGAN-VALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTCE-EEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 3467899999999999999999999999998 9999998653110 011235688999999999998887
Q ss_pred hc-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCcccc
Q 011770 76 AR-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIV 140 (478)
Q Consensus 76 l~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~ 140 (478)
++ ++|++||+||..... .+..+.+..+++|+.|+.++.+++.+. +..++|++||...+.+...
T Consensus 84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-- 161 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWL-- 161 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGGS--
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCCC--
Confidence 76 789999999975432 233456778899999999999999775 4569999999876322100
Q ss_pred CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeee
Q 011770 141 NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 141 ~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~ 220 (478)
....|+.||...+.+++....+ + +..|+++.+++|+.+... .+.+......
T Consensus 162 -------------~~~~Y~asKaal~~~~~~la~e-~---~~~gI~vn~v~PG~~v~t-------~~~~~~~~~~----- 212 (285)
T 3sc4_A 162 -------------RPTPYMMAKYGMTLCALGIAEE-L---RDAGIASNTLWPRTTVAT-------AAVQNLLGGD----- 212 (285)
T ss_dssp -------------CSHHHHHHHHHHHHHHHHHHHH-T---GGGTCEEEEEECSSCBCC-------HHHHHHHTSC-----
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEeCCCcccc-------HHHHhhcccc-----
Confidence 1267999999999998776532 1 147899999999843221 1122222211
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSD 268 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~ 268 (478)
.....+...+|+|++++.++.. .....|+.+.+.+
T Consensus 213 ---~~~~r~~~pedvA~~~~~l~s~----------~~~~tG~~i~~dg 247 (285)
T 3sc4_A 213 ---EAMARSRKPEVYADAAYVVLNK----------PSSYTGNTLLCED 247 (285)
T ss_dssp ---CCCTTCBCTHHHHHHHHHHHTS----------CTTCCSCEEEHHH
T ss_pred ---ccccCCCCHHHHHHHHHHHhCC----------cccccceEEEEcC
Confidence 1123466789999999988863 1145677666544
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-20 Score=178.49 Aligned_cols=225 Identities=20% Similarity=0.188 Sum_probs=157.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+....... ......+.++++|++|.++++++++ ++|
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 81 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGAR-VAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKID 81 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 66899999999999999999999999998 99999875421111 1123568999999999998887765 679
Q ss_pred EEEEcccCCCCch---------hhhchhhhhHhhhHHHHHHHHHHHHcC---CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 81 CVFHVASYGMSGK---------EMLQFGRVDEVNINGTCHVIEACLEFG---IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 81 ~ViHlAa~~~~~~---------~~~~~~~~~~vNv~gt~nll~aa~~~~---v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++||+||...... ...+.+..+++|+.|+.++++++.+.- -.++|++||...+.+..
T Consensus 82 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 150 (281)
T 3zv4_A 82 TLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNG----------- 150 (281)
T ss_dssp EEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSS-----------
T ss_pred EEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCC-----------
Confidence 9999999643211 112356788999999999999986532 25999999987642211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---HH-------HHHHHHHcCCCCe
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LP-------RIVSLAKLGLVPF 218 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~~-------~~i~~~~~g~~~~ 218 (478)
....|+.||...+.+.+....+ + ...+++.++.|+.|..+..... .. .....+....
T Consensus 151 -----~~~~Y~asKaa~~~l~~~la~e-~----~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 217 (281)
T 3zv4_A 151 -----GGPLYTATKHAVVGLVRQMAFE-L----APHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVL--- 217 (281)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHH-H----TTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTC---
T ss_pred -----CCchhHHHHHHHHHHHHHHHHH-h----cCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcC---
Confidence 1257999999999998776532 1 1239999999999988743210 00 0112222222
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
....+...+|+|++++.++... ......|+++++.+|..+
T Consensus 218 ------p~~r~~~pedvA~~v~fL~s~~--------~~~~itG~~i~vdGG~~~ 257 (281)
T 3zv4_A 218 ------PIGRMPALEEYTGAYVFFATRG--------DSLPATGALLNYDGGMGV 257 (281)
T ss_dssp ------TTSSCCCGGGGSHHHHHHHSTT--------TSTTCSSCEEEESSSGGG
T ss_pred ------CCCCCCCHHHHHHHHHHhhccc--------ccccccCcEEEECCCCcc
Confidence 1234667899999998887510 122368999999887544
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=177.57 Aligned_cols=206 Identities=15% Similarity=0.096 Sum_probs=142.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++|++|||||+|+||++++++|+++|++ |++++|+........ .....+.++++|++|.++++++++
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998 999998754211100 012235899999999999888775
Q ss_pred --CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHc----C--CCeEEEEeccceeeCCccccCCCC
Q 011770 78 --GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEF----G--IQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~----~--v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++.+++.+. + ..++|++||...+.+..
T Consensus 109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~------- 181 (281)
T 4dry_A 109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRP------- 181 (281)
T ss_dssp HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCT-------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCC-------
Confidence 579999999974321 234566778999999999888887653 2 35899999987632211
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
+ ...|+.||...|.+.+....+ + +..++++.+++|+.|..+.... ...+. . ......
T Consensus 182 -----~----~~~Y~asKaa~~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~--------~~~~~-~-~~~~~~ 238 (281)
T 4dry_A 182 -----N----SAPYTATKHAITGLTKSTALD-G---RMHDIACGQIDIGNAATDMTAR--------MSTGV-L-QANGEV 238 (281)
T ss_dssp -----T----CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEEECBCC---------------CEE-E-CTTSCE
T ss_pred -----C----ChhHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEEECcCcChhhhh--------hcchh-h-hhhhcc
Confidence 1 267999999999998766431 1 1478999999999998764221 11100 0 000001
Q ss_pred ccccceeHHHHHHHHHHHHh
Q 011770 225 VKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~ 244 (478)
....+...+|+|++++.++.
T Consensus 239 ~~~~~~~pedvA~~v~fL~s 258 (281)
T 4dry_A 239 AAEPTIPIEHIAEAVVYMAS 258 (281)
T ss_dssp EECCCBCHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhC
Confidence 12347889999999999887
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=172.68 Aligned_cols=220 Identities=13% Similarity=0.074 Sum_probs=148.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHH----HhcCcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEK----AARGVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~----~l~~~D~Vi 83 (478)
||+++||||+|+||++++++|+++|++ |++++|+........ .....+..+ |..+.+.+.+ .+.++|+||
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~lv 77 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHT-VACHDESFKQKDELEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQVDVLV 77 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHHHHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCEEE
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCEEE
Confidence 478999999999999999999999998 999998765321100 012233333 5555443322 223799999
Q ss_pred EcccCC-CCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCcc
Q 011770 84 HVASYG-MSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH 154 (478)
Q Consensus 84 HlAa~~-~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~ 154 (478)
|+||.. ... .+..+.+..+++|+.|+.++++++. +.+..++|++||...+.+.. .
T Consensus 78 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------~ 141 (254)
T 1zmt_A 78 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWK----------------E 141 (254)
T ss_dssp EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCT----------------T
T ss_pred ECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCC----------------C
Confidence 999975 222 1334567889999999999999885 34567999999987642211 1
Q ss_pred CCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-H-------HHHHHHHcCCCCeeeCCCCcc
Q 011770 155 VDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-P-------RIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 155 ~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~-------~~i~~~~~g~~~~~~g~g~~~ 226 (478)
...|+.||...|.+.+....+ + ...++++++++|+.|+||+..... . .....+.... ..
T Consensus 142 ~~~Y~~sK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~---------p~ 208 (254)
T 1zmt_A 142 LSTYTSARAGACTLANALSKE-L---GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT---------AL 208 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-H---GGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS---------SS
T ss_pred chHHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccC---------CC
Confidence 267999999999998766431 1 136899999999999998754321 1 1111111111 11
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+.+.+|+|++++.++.. ......|+.+++.+|..
T Consensus 209 ~~~~~p~dvA~~v~~l~s~---------~~~~~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 209 QRLGTQKELGELVAFLASG---------SCDYLTGQVFWLAGGFP 244 (254)
T ss_dssp SSCBCHHHHHHHHHHHHTT---------SCGGGTTCEEEESTTCC
T ss_pred CCCcCHHHHHHHHHHHhCc---------ccCCccCCEEEECCCch
Confidence 2367899999999988762 12245789999987754
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=174.99 Aligned_cols=225 Identities=12% Similarity=-0.002 Sum_probs=156.1
Q ss_pred CCCCCCeEEEEcC--CChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGG--LGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGa--tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
..+++|+++|||| +|+||++++++|.++|++ |++++|+....... .....++.++++|++|+++++++++
T Consensus 3 ~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (269)
T 2h7i_A 3 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA 81 (269)
T ss_dssp CTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCchHHHHHHHHHHCCCE-EEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHH
Confidence 3467899999999 999999999999999998 99999875421011 1123457889999999999888776
Q ss_pred -----CcCEEEEcccCCCC---------chhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccC
Q 011770 78 -----GVDCVFHVASYGMS---------GKEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~---------~~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~ 141 (478)
++|+|||+||.... ..+..+.+..+++|+.|+.++++++.+.- -.++|++||... ++.
T Consensus 82 ~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~-~~~----- 155 (269)
T 2h7i_A 82 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-RAM----- 155 (269)
T ss_dssp HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-SCC-----
T ss_pred hCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc-ccc-----
Confidence 78999999996541 11234567788999999999999998642 148999998654 111
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc-----HH-------HHHH
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH-----LP-------RIVS 209 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~-----~~-------~~i~ 209 (478)
| ....|+.||...+.+.+....+ + ...|+++.+++|+.|..+..... -. ...+
T Consensus 156 --------~---~~~~Y~asKaa~~~l~~~la~e-~---~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 220 (269)
T 2h7i_A 156 --------P---AYNWMTVAKSALESVNRFVARE-A---GKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEE 220 (269)
T ss_dssp --------T---TTHHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred --------C---chHHHHHHHHHHHHHHHHHHHH-h---cccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHH
Confidence 1 1257999999999988765431 1 13689999999999976521100 00 0111
Q ss_pred HHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 210 LAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 210 ~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
......+. + +.+...+|+|++++.++.. ......|+.+++.+|.
T Consensus 221 ~~~~~~p~---~-----rr~~~p~dvA~~v~~L~s~---------~~~~itG~~i~vdGG~ 264 (269)
T 2h7i_A 221 GWDQRAPI---G-----WNMKDATPVAKTVCALLSD---------WLPATTGDIIYADGGA 264 (269)
T ss_dssp HHHHHCTT---C-----CCTTCCHHHHHHHHHHHSS---------SCTTCCSEEEEESTTG
T ss_pred hhhccCCc---c-----cCCCCHHHHHHHHHHHhCc---------hhccCcceEEEecCCe
Confidence 11111111 0 1355678999999988752 1234678899988764
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=162.43 Aligned_cols=220 Identities=17% Similarity=0.220 Sum_probs=160.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~ViHl 85 (478)
.++|+++||||++-||+++++.|.++|++ |++.+|+.... ......++..+++|++|+++++++++ ++|++||+
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~-Vv~~~~~~~~~--~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNN 85 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAE-VVALGLDADGV--HAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNN 85 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTST--TSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEEC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHH--hhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence 47999999999999999999999999999 99999986533 22345678999999999999988876 68999999
Q ss_pred ccCCCCch--hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHh
Q 011770 86 ASYGMSGK--EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGR 160 (478)
Q Consensus 86 Aa~~~~~~--~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~ 160 (478)
||...+.. +.++++..+++|+.|+..+.+++..+ +-.++|++||.....+.+. ...|+.
T Consensus 86 AGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~----------------~~~Y~a 149 (242)
T 4b79_A 86 AGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSAD----------------RPAYSA 149 (242)
T ss_dssp CCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCCSS----------------CHHHHH
T ss_pred CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCCCC----------------CHHHHH
Confidence 99754322 33467889999999999988887653 1258999999876322111 257999
Q ss_pred hHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 161 SKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 161 sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
||...+.+.+....+ + +.+|+++..+-|+.|..|..... -+...+.+....+.-. +-..+|+|++
T Consensus 150 sKaav~~ltr~lA~E-l---a~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR---------~g~peeiA~~ 216 (242)
T 4b79_A 150 SKGAIVQLTRSLACE-Y---AAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLAR---------WGEAPEVASA 216 (242)
T ss_dssp HHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCS---------CBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-h---hhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCC---------CcCHHHHHHH
Confidence 999999888765432 1 24799999999999987743321 1233344444443333 3457899999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
++.++.. ...-..|+++.|.+|
T Consensus 217 v~fLaSd---------~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 217 AAFLCGP---------GASFVTGAVLAVDGG 238 (242)
T ss_dssp HHHHTSG---------GGTTCCSCEEEESTT
T ss_pred HHHHhCc---------hhcCccCceEEECcc
Confidence 9887642 122467899988766
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-19 Score=174.68 Aligned_cols=202 Identities=16% Similarity=0.139 Sum_probs=148.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---------c--cccCCCeEEEEecCCCHHHHHHH
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---------H--LLINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---------~--~~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
.++++|++|||||+|.||.+++++|+++|++ |++++|+...... . ......+.++++|++|.++++++
T Consensus 41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~-Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 119 (346)
T 3kvo_A 41 GRLAGCTVFITGASRGIGKAIALKAAKDGAN-IVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAA 119 (346)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHHHCCCE-EEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 4567899999999999999999999999998 9999988653110 0 11134688899999999998888
Q ss_pred hc-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCcccc
Q 011770 76 AR-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIV 140 (478)
Q Consensus 76 l~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~ 140 (478)
++ ++|+|||+||..... .+..+.+..+++|+.|+.++++++... +..++|++||...+.+..
T Consensus 120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~--- 196 (346)
T 3kvo_A 120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVW--- 196 (346)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGG---
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCC---
Confidence 76 789999999964322 233456788999999999999999653 557999999987632210
Q ss_pred CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeee
Q 011770 141 NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 141 ~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~ 220 (478)
. + ....|+.||...+.+++....+. + .++++.++.|+.+.... +.+.+. +.
T Consensus 197 -------~-~---~~~~Y~aSKaal~~l~~~la~e~----~-~gIrvn~v~PG~~i~T~-------~~~~~~-~~----- 247 (346)
T 3kvo_A 197 -------F-K---QHCAYTIAKYGMSMYVLGMAEEF----K-GEIAVNALWPKTAIHTA-------AMDMLG-GP----- 247 (346)
T ss_dssp -------T-S---SSHHHHHHHHHHHHHHHHHHHHT----T-TTCEEEEEECSBCBCCH-------HHHHHC-C------
T ss_pred -------C-C---CchHHHHHHHHHHHHHHHHHHHh----c-CCcEEEEEeCCCccccH-------HHHhhc-cc-----
Confidence 0 1 12679999999999998775421 2 68999999999633321 122221 11
Q ss_pred CCCCccccceeHHHHHHHHHHHHh
Q 011770 221 GEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.....+...+|+|++++.++.
T Consensus 248 ---~~~~r~~~pedvA~~v~~L~s 268 (346)
T 3kvo_A 248 ---GIESQCRKVDIIADAAYSIFQ 268 (346)
T ss_dssp ----CGGGCBCTHHHHHHHHHHHT
T ss_pred ---cccccCCCHHHHHHHHHHHHh
Confidence 123456688999999999987
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-19 Score=165.82 Aligned_cols=215 Identities=14% Similarity=0.224 Sum_probs=158.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~Vi 83 (478)
+|+||||||++-||+++++.|.++|++ |++.||++...........++.++++|++|+++++++++ ++|++|
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLV 80 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDK-VCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV 80 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 489999999999999999999999999 999998754322222334578899999999999888765 689999
Q ss_pred EcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 84 HVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 84 HlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
|+||...... +.++++..+++|+.|+.++.+++.++ +-.++|++||.....+. |. ..
T Consensus 81 NNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~-------------~~---~~ 144 (247)
T 3ged_A 81 NNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSE-------------PD---SE 144 (247)
T ss_dssp ECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCC-------------TT---CH
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCC-------------CC---CH
Confidence 9999754332 34567889999999999998887653 22699999998763221 11 25
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHH
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLV 236 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva 236 (478)
+|+.||...+.+.+..+.+ + .+++++..+-|+.|-.+.......... ...+.- -+...+|+|
T Consensus 145 ~Y~asKaal~~ltk~lA~e-l----a~~IrVN~I~PG~i~t~~~~~~~~~~~----~~~Pl~---------R~g~pediA 206 (247)
T 3ged_A 145 AYASAKGGIVALTHALAMS-L----GPDVLVNCIAPGWINVTEQQEFTQEDC----AAIPAG---------KVGTPKDIS 206 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H----TTTSEEEEEEECSBCCCC---CCHHHH----HTSTTS---------SCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-H----CCCCEEEEEecCcCCCCCcHHHHHHHH----hcCCCC---------CCcCHHHHH
Confidence 7999999999888766532 2 248999999999997775544333322 222221 234578999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 237 LALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 237 ~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
++++.++.. .-..|+++.|.+|-.
T Consensus 207 ~~v~fL~s~-----------~~iTG~~i~VDGG~s 230 (247)
T 3ged_A 207 NMVLFLCQQ-----------DFITGETIIVDGGMS 230 (247)
T ss_dssp HHHHHHHHC-----------SSCCSCEEEESTTGG
T ss_pred HHHHHHHhC-----------CCCCCCeEEECcCHH
Confidence 999988762 257899999987743
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=169.94 Aligned_cols=214 Identities=18% Similarity=0.095 Sum_probs=151.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecC--CCHHHHHHHhc--
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDV--VSKIDVEKAAR-- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl--~d~~~l~~~l~-- 77 (478)
+.+++|+++||||+|+||++++++|+++|++ |++++|+....... .....++.++.+|+ +|.+++.++++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~ 88 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV 88 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence 4578899999999999999999999999998 99999875421110 01124577888888 89888877665
Q ss_pred -----CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCC
Q 011770 78 -----GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
++|+|||+||..... .+..+.+..+++|+.|+.++++++. +.+..++|++||...+.+..
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------ 162 (247)
T 3i1j_A 89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRA------ 162 (247)
T ss_dssp HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCT------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCC------
Confidence 789999999964221 1334567889999999999999985 34556999999987632211
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g 223 (478)
....|+.||...|.+++.+..+. . +..++++.+++|+.|..+. .......
T Consensus 163 ----------~~~~Y~~sK~a~~~~~~~la~e~-~--~~~~i~v~~v~PG~v~t~~--------~~~~~~~--------- 212 (247)
T 3i1j_A 163 ----------NWGAYGVSKFATEGLMQTLADEL-E--GVTAVRANSINPGATRTGM--------RAQAYPD--------- 212 (247)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHH-T--TTSSEEEEEEECCCCSSHH--------HHHHSTT---------
T ss_pred ----------CcchhHHHHHHHHHHHHHHHHHh-c--CCCCeEEEEEecCcccCcc--------chhcccc---------
Confidence 12679999999999987664321 0 1268999999999886541 1111111
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEe
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFV 266 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni 266 (478)
.....+...+|++++++.++... .....|+.+++
T Consensus 213 ~~~~~~~~p~dva~~~~~l~s~~---------~~~itG~~i~~ 246 (247)
T 3i1j_A 213 ENPLNNPAPEDIMPVYLYLMGPD---------STGINGQALNA 246 (247)
T ss_dssp SCGGGSCCGGGGTHHHHHHHSGG---------GTTCCSCEEEC
T ss_pred cCccCCCCHHHHHHHHHHHhCch---------hccccCeeecC
Confidence 12234567899999999887521 22456777665
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-20 Score=177.75 Aligned_cols=201 Identities=18% Similarity=0.160 Sum_probs=144.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++++|+||||+|+||++++++|+++|++ |++++|+........ ....++.++.+|++|.++++++++
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 366789999999999999999999999998 999998754211100 011358899999999998887775
Q ss_pred --CcCEEEEc-ccCCCCc---hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 --GVDCVFHV-ASYGMSG---KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 --~~D~ViHl-Aa~~~~~---~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|+|||+ |+..... .+..+....+++|+.|+.++++++.+. +.+++|++||...+.+.
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 171 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAY------------ 171 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCC------------
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCC------------
Confidence 78999999 5543221 123455778899999999999988653 23699999998763211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
| ..+.|+.||...|.+++.+..+ +.. ...++++++++|+.+.++.. .....+ .....
T Consensus 172 -~---~~~~Y~asK~a~~~~~~~l~~e-~~~-~~~~i~v~~v~Pg~v~t~~~--------~~~~~~---------~~~~~ 228 (286)
T 1xu9_A 172 -P---MVAAYSASKFALDGFFSSIRKE-YSV-SRVNVSITLCVLGLIDTETA--------MKAVSG---------IVHMQ 228 (286)
T ss_dssp -T---TCHHHHHHHHHHHHHHHHHHHH-HHH-HTCCCEEEEEEECCBCCHHH--------HHHSCG---------GGGGG
T ss_pred -C---CccHHHHHHHHHHHHHHHHHHH-Hhh-cCCCeEEEEeecCccCChhH--------HHhccc---------cccCC
Confidence 1 1267999999999988765421 100 03589999999999876521 111011 12245
Q ss_pred ceeHHHHHHHHHHHHh
Q 011770 229 WIYVDNLVLALILASM 244 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~ 244 (478)
+++.+|+|++++.+++
T Consensus 229 ~~~~~~vA~~i~~~~~ 244 (286)
T 1xu9_A 229 AAPKEECALEIIKGGA 244 (286)
T ss_dssp CBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7899999999999887
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-21 Score=190.77 Aligned_cols=177 Identities=11% Similarity=0.066 Sum_probs=127.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-------ceEEEEecCCCCc--cc--ccccCCCeEEEEecCCCHHHHHHHhcCc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-------YQVRAFDLRTNSP--WS--HLLINHGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-------~~V~~l~r~~~~~--~~--~~~~~~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
+|||+||||+||||++++..|+++|+ + |+++|+.+... .. ....+..+.++ +|+++.+++.++++++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~e-v~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~~~ 81 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI-LQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDDPKVAFKDA 81 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEE-EEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCE-EEEEeCCCchhhccchhhhhhccccccc-CCeEeccChHHHhCCC
Confidence 35899999999999999999999986 5 99999764200 00 01111223334 6888777788899999
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CC-eEEEEeccceeeCCccccCCC-CCC-CCCCCCccC
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQ-RLVYVSTYNVVFGGKEIVNGN-ESL-PYFPIDEHV 155 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~-r~V~~SS~~v~~g~~~~~~~~-E~~-p~~p~~~~~ 155 (478)
|+|||+||..... ..++.+..++|+.+|.+++++|++++ .+ +++++|+..-.. .+.. |.. ++.| .
T Consensus 82 D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~-----~~~~~~~~~~~~p----~ 150 (327)
T 1y7t_A 82 DYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTN-----ALIAYKNAPGLNP----R 150 (327)
T ss_dssp SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH-----HHHHHHTCTTSCG----G
T ss_pred CEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhh-----HHHHHHHcCCCCh----h
Confidence 9999999975432 23567789999999999999999986 65 777777653100 0111 222 2323 3
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRI 207 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~ 207 (478)
++|+.||+.+|++...+.+ ..|++.+++||++||||++...++.+
T Consensus 151 ~~yg~tkl~~er~~~~~a~-------~~g~~~~~vr~~~V~G~h~~~~~~~~ 195 (327)
T 1y7t_A 151 NFTAMTRLDHNRAKAQLAK-------KTGTGVDRIRRMTVWGNHSSTMFPDL 195 (327)
T ss_dssp GEEECCHHHHHHHHHHHHH-------HHTCCGGGEECCEEEBCSSTTCEEEC
T ss_pred heeccchHHHHHHHHHHHH-------HhCcChhheeeeEEEcCCCCeEEEEe
Confidence 6799999999999877653 46899999999999999876544433
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=166.90 Aligned_cols=201 Identities=17% Similarity=0.142 Sum_probs=144.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----------cccCCCeEEEEecCCCHHHHHHHh
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----------LLINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----------~~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
++++|+++||||+|.||++++++|.++|++ |++++|+....... .....++.++++|++|.+++++++
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 81 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGAN-VAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAV 81 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence 467899999999999999999999999998 99999986531100 011356889999999999988877
Q ss_pred c-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccC
Q 011770 77 R-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~ 141 (478)
+ ++|++||+||..... .+..+.+..+++|+.|+.++.+++.. .+..++|++||...+.+...
T Consensus 82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~--- 158 (274)
T 3e03_A 82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWW--- 158 (274)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHH---
T ss_pred HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCC---
Confidence 5 689999999975332 23345677889999999999999865 34569999999876422100
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeC
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g 221 (478)
.....|+.||...+.+.+....+ + +..|+++.++.|+.+...... ... .+
T Consensus 159 -----------~~~~~Y~asKaal~~l~~~la~e-~---~~~gI~vn~v~PG~~v~T~~~-------~~~-~~------- 208 (274)
T 3e03_A 159 -----------GAHTGYTLAKMGMSLVTLGLAAE-F---GPQGVAINALWPRTVIATDAI-------NML-PG------- 208 (274)
T ss_dssp -----------HHCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEECSBCBCC---------------C-------
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHH-h---hhcCEEEEEEECCcccccchh-------hhc-cc-------
Confidence 01257999999999988766432 1 146899999999853332111 101 11
Q ss_pred CCCccccceeHHHHHHHHHHHHh
Q 011770 222 EPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.....+...+|+|++++.++.
T Consensus 209 --~~~~~~~~pedvA~~v~~l~s 229 (274)
T 3e03_A 209 --VDAAACRRPEIMADAAHAVLT 229 (274)
T ss_dssp --CCGGGSBCTHHHHHHHHHHHT
T ss_pred --ccccccCCHHHHHHHHHHHhC
Confidence 122336789999999998876
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=172.82 Aligned_cols=205 Identities=13% Similarity=0.077 Sum_probs=144.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHH---cCCceEEEEecCCCCcccc--cc----cCCCeEEEEecCCCHHHHHHHhc-
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVR---RGAYQVRAFDLRTNSPWSH--LL----INHGVHCIQGDVVSKIDVEKAAR- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~---~G~~~V~~l~r~~~~~~~~--~~----~~~~v~~v~gDl~d~~~l~~~l~- 77 (478)
++++|+++||||+|+||++++++|++ +|++ |++++|+....... .. ....+.++++|++|+++++++++
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSV-MLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCE-EEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCe-EEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 46778999999999999999999999 8998 99999875421110 00 03458899999999998887664
Q ss_pred --------CcC--EEEEcccCCCC--c-----hhhhchhhhhHhhhHHHHHHHHHHHHcC------CCeEEEEeccceee
Q 011770 78 --------GVD--CVFHVASYGMS--G-----KEMLQFGRVDEVNINGTCHVIEACLEFG------IQRLVYVSTYNVVF 134 (478)
Q Consensus 78 --------~~D--~ViHlAa~~~~--~-----~~~~~~~~~~~vNv~gt~nll~aa~~~~------v~r~V~~SS~~v~~ 134 (478)
++| +|||+||.... . .+..+.+..+++|+.|+.++++++.+.- ..++|++||...+.
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 358 99999996432 1 2335667889999999999999998652 34699999987742
Q ss_pred CCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-----HHHHH
Q 011770 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-----PRIVS 209 (478)
Q Consensus 135 g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-----~~~i~ 209 (478)
+. | ....|+.||...|.+.+....+ ..++++.++.|+.+-.+...... +....
T Consensus 162 ~~-------------~---~~~~Y~asKaa~~~~~~~la~e------~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~ 219 (259)
T 1oaa_A 162 PY-------------K---GWGLYCAGKAARDMLYQVLAAE------EPSVRVLSYAPGPLDNDMQQLARETSKDPELRS 219 (259)
T ss_dssp CC-------------T---TCHHHHHHHHHHHHHHHHHHHH------CTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHH
T ss_pred CC-------------C---CccHHHHHHHHHHHHHHHHHhh------CCCceEEEecCCCcCcchHHHHhhccCChhHHH
Confidence 11 1 1267999999999999877542 12499999999988554211000 00011
Q ss_pred HHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 210 LAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 210 ~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.+... .....+...+|+|++++.++.
T Consensus 220 ~~~~~---------~p~~~~~~p~dvA~~v~~l~~ 245 (259)
T 1oaa_A 220 KLQKL---------KSDGALVDCGTSAQKLLGLLQ 245 (259)
T ss_dssp HHHHH---------HHTTCSBCHHHHHHHHHHHHH
T ss_pred HHHHh---------hhcCCcCCHHHHHHHHHHHHh
Confidence 11100 012346789999999998886
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=180.78 Aligned_cols=198 Identities=21% Similarity=0.211 Sum_probs=147.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc--c---c--cccCCCeEEEEecCCCHHHHHHHhcCc---
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW--S---H--LLINHGVHCIQGDVVSKIDVEKAARGV--- 79 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~---~--~~~~~~v~~v~gDl~d~~~l~~~l~~~--- 79 (478)
.++++|||||+|+||.+++++|.++|+++|++++|+.+... . . .....+++++.+|++|.+++.++++++
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~ 304 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 304 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999999999999965888888754210 0 0 112346889999999999999998765
Q ss_pred ---CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 80 ---DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 80 ---D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
|+|||+|+..... .+..+....+++|+.|+.++.+++.+.+.++||++||.+.+++...
T Consensus 305 g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~g-------------- 370 (486)
T 2fr1_A 305 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPG-------------- 370 (486)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTT--------------
T ss_pred CCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCCC--------------
Confidence 9999999975432 1334556778899999999999999988999999999877554321
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
...|+.+|...|.+..+.. ..|+++++++|+.+++++.... ... . ... .....+++.
T Consensus 371 --~~~Yaaaka~l~~la~~~~--------~~gi~v~~i~pG~~~~~gm~~~------~~~-~----~~~--~~g~~~i~~ 427 (486)
T 2fr1_A 371 --LGGYAPGNAYLDGLAQQRR--------SDGLPATAVAWGTWAGSGMAEG------PVA-D----RFR--RHGVIEMPP 427 (486)
T ss_dssp --CTTTHHHHHHHHHHHHHHH--------HTTCCCEEEEECCBC-----------------------CT--TTTEECBCH
T ss_pred --CHHHHHHHHHHHHHHHHHH--------hcCCeEEEEECCeeCCCcccch------hHH-H----HHH--hcCCCCCCH
Confidence 1579999999999887654 3689999999999988753210 000 0 000 123468999
Q ss_pred HHHHHHHHHHHh
Q 011770 233 DNLVLALILASM 244 (478)
Q Consensus 233 ~Dva~a~~~a~~ 244 (478)
+|+++++..+++
T Consensus 428 e~~a~~l~~~l~ 439 (486)
T 2fr1_A 428 ETACRALQNALD 439 (486)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=167.32 Aligned_cols=227 Identities=20% Similarity=0.192 Sum_probs=162.0
Q ss_pred CcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 4 SENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 4 ~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
+.++++++|+++||||++-||+++++.|.++|++ |++.+|+...... ......++..+++|++|+++++++++
T Consensus 2 s~~f~L~gKvalVTGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 80 (255)
T 4g81_D 2 TALFDLTGKTALVTGSARGLGFAYAEGLAAAGAR-VILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKL 80 (255)
T ss_dssp -CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 3456789999999999999999999999999999 9999987542111 01123568889999999999888775
Q ss_pred -----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccccCCC
Q 011770 78 -----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
++|++||+||.....+ +.++++..+++|+.|+..+.+++.++ +-.++|++||.....+.+
T Consensus 81 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~------ 154 (255)
T 4g81_D 81 DAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARP------ 154 (255)
T ss_dssp HHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCT------
T ss_pred HHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCC------
Confidence 5799999999754332 34577889999999999998877542 345899999987632211
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g 221 (478)
. ..+|+.||...+.+.+..+.+ + +.+|+++..+-|+.|..|...... +...+.+....+.-.+|
T Consensus 155 -------~---~~~Y~asKaal~~ltr~lA~e-l---a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g 220 (255)
T 4g81_D 155 -------T---VAPYTAAKGGIKMLTCSMAAE-W---AQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWG 220 (255)
T ss_dssp -------T---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCSCB
T ss_pred -------C---chhHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCCCc
Confidence 1 257999999999888765432 1 247999999999999876432111 22333333333332333
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
..+|+|.+++.++.. ...-..|+++.|.+|
T Consensus 221 ---------~pediA~~v~fL~S~---------~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 221 ---------RPEELIGTAIFLSSK---------ASDYINGQIIYVDGG 250 (255)
T ss_dssp ---------CGGGGHHHHHHHHSG---------GGTTCCSCEEEESTT
T ss_pred ---------CHHHHHHHHHHHhCc---------hhCCCcCCEEEECCC
Confidence 457999998877642 123468899998766
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=169.17 Aligned_cols=203 Identities=16% Similarity=0.067 Sum_probs=141.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCH-HHHHHHhc----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSK-IDVEKAAR---- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~-~~l~~~l~---- 77 (478)
.+++|+|+||||+|+||++++++|+++|++ |++++|+....... .....++.++++|++|. ++++++++
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIM-VVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 456789999999999999999999999998 99999875421110 01124689999999997 77766654
Q ss_pred ---CcCEEEEcccCCCCc----------------------------------hhhhchhhhhHhhhHHHHHHHHHHHH--
Q 011770 78 ---GVDCVFHVASYGMSG----------------------------------KEMLQFGRVDEVNINGTCHVIEACLE-- 118 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~----------------------------------~~~~~~~~~~~vNv~gt~nll~aa~~-- 118 (478)
++|+|||+||..... ......+..+++|+.|+.++++++..
T Consensus 88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 167 (311)
T 3o26_A 88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL 167 (311)
T ss_dssp HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence 789999999975321 12233456789999999999998864
Q ss_pred --cCCCeEEEEeccceeeCCccc------------------------------cCCCCCCCCCCCCccCCchHhhHHHHH
Q 011770 119 --FGIQRLVYVSTYNVVFGGKEI------------------------------VNGNESLPYFPIDEHVDSYGRSKSVAE 166 (478)
Q Consensus 119 --~~v~r~V~~SS~~v~~g~~~~------------------------------~~~~E~~p~~p~~~~~~~Y~~sK~~aE 166 (478)
.+..++|++||...+.+.... ....+..... .....|+.||+..+
T Consensus 168 ~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~SK~a~~ 244 (311)
T 3o26_A 168 QLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWP---SFGAAYTTSKACLN 244 (311)
T ss_dssp TTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCC---SSCHHHHHHHHHHH
T ss_pred ccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCc---ccchhhHHHHHHHH
Confidence 345699999998764432100 0001111111 12367999999999
Q ss_pred HHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 167 QLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 167 ~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
.+++.+..+ ..++++.++.||.|..+.... . .....++.++.++.++.
T Consensus 245 ~~~~~la~e------~~~i~v~~v~PG~v~T~~~~~------------~------------~~~~~~~~a~~~~~~~~ 292 (311)
T 3o26_A 245 AYTRVLANK------IPKFQVNCVCPGLVKTEMNYG------------I------------GNYTAEEGAEHVVRIAL 292 (311)
T ss_dssp HHHHHHHHH------CTTSEEEEECCCSBCSGGGTT------------C------------CSBCHHHHHHHHHHHHT
T ss_pred HHHHHHHhh------cCCceEEEecCCceecCCcCC------------C------------CCCCHHHHHHHHHHHHh
Confidence 999887642 245999999999997763211 0 11367888988888765
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=177.72 Aligned_cols=199 Identities=19% Similarity=0.148 Sum_probs=149.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc--c---cc--ccCCCeEEEEecCCCHHHHHHHhcC--cC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW--S---HL--LINHGVHCIQGDVVSKIDVEKAARG--VD 80 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~---~~--~~~~~v~~v~gDl~d~~~l~~~l~~--~D 80 (478)
.+++||||||+|+||.+++++|.++|+++|++++|+..... . .. ....+++++.+|++|.+++.+++++ +|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld 337 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN 337 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence 46899999999999999999999999954888888753210 0 01 1134588999999999999999975 99
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
+|||+||...... +..+.+..+++|+.|+.++.+++... +.++||++||...+++... .
T Consensus 338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~g----------------~ 401 (511)
T 2z5l_A 338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAG----------------Q 401 (511)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCTT----------------B
T ss_pred EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCCC----------------C
Confidence 9999999754331 23345677899999999999999877 7889999999876554321 2
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNL 235 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dv 235 (478)
..|+.+|...|.++.... ..|+++++++|+.+-+.+...... ...+.. ....+++.+|+
T Consensus 402 ~~YaaaKa~ld~la~~~~--------~~gi~v~sv~pG~~~~tgm~~~~~--~~~~~~-----------~g~~~l~~e~~ 460 (511)
T 2z5l_A 402 GAYAAANAALDALAERRR--------AAGLPATSVAWGLWGGGGMAAGAG--EESLSR-----------RGLRAMDPDAA 460 (511)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TTTCCCEEEEECCBCSTTCCCCHH--HHHHHH-----------HTBCCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------HcCCcEEEEECCcccCCccccccc--HHHHHh-----------cCCCCCCHHHH
Confidence 579999999999998764 468999999999885444332221 111111 11346889999
Q ss_pred HHHHHHHHhc
Q 011770 236 VLALILASMG 245 (478)
Q Consensus 236 a~a~~~a~~~ 245 (478)
++++..++..
T Consensus 461 a~~l~~al~~ 470 (511)
T 2z5l_A 461 VDALLGAMGR 470 (511)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999873
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=176.25 Aligned_cols=225 Identities=17% Similarity=0.109 Sum_probs=156.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc-cccccCCCeEEEEecCCCHHHHHHHhc-------C-
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW-SHLLINHGVHCIQGDVVSKIDVEKAAR-------G- 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~-~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~- 78 (478)
.+++++++||||+|.||.++++.|.++|++ |++++|+..... .......+++++.+|++|.++++++++ +
T Consensus 210 ~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~-Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~ 288 (454)
T 3u0b_A 210 PLDGKVAVVTGAARGIGATIAEVFARDGAT-VVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGK 288 (454)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCchHHHHHHHHHHHHCCCE-EEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence 356789999999999999999999999998 999988643211 111122356889999999998888765 3
Q ss_pred cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|+|||+|+..... .+..+.+..+++|+.|+.++.+++... +..+||++||.+.+.+...
T Consensus 289 id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g------------ 356 (454)
T 3u0b_A 289 VDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRG------------ 356 (454)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCTT------------
T ss_pred ceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCCC------------
Confidence 89999999975432 234456788999999999999999886 5569999999887544221
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...|+.||...+.+.+....+ + ...|++++++.|+.|..+................. ....+.
T Consensus 357 ----~~~YaasKaal~~l~~~la~e-~---~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---------~l~r~g 419 (454)
T 3u0b_A 357 ----QTNYATTKAGMIGLAEALAPV-L---ADKGITINAVAPGFIETKMTEAIPLATREVGRRLN---------SLFQGG 419 (454)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEECSBCC----------CHHHHHSB---------TTSSCB
T ss_pred ----CHHHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEEcCcccChhhhhcchhhHHHHHhhc---------cccCCC
Confidence 267999999777777654321 1 14689999999999988754321111001111111 112345
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+|+++++..++... .....|+++++.+|..
T Consensus 420 ~pedvA~~v~fL~s~~---------a~~itG~~i~vdGG~~ 451 (454)
T 3u0b_A 420 QPVDVAELIAYFASPA---------SNAVTGNTIRVCGQAM 451 (454)
T ss_dssp CHHHHHHHHHHHHCGG---------GTTCCSCEEEESSSBS
T ss_pred CHHHHHHHHHHHhCCc---------cCCCCCcEEEECCccc
Confidence 7899999998877521 2346799999987653
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=162.50 Aligned_cols=225 Identities=16% Similarity=0.152 Sum_probs=160.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
.++++|+++||||++-||+++++.|.++|++ |++.+|+....... .....++..+++|++|+++++++++ +
T Consensus 25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~-V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 103 (273)
T 4fgs_A 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGAR-VFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGR 103 (273)
T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred chhCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3578899999999999999999999999999 99999875421111 1124567889999999999888765 5
Q ss_pred cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 79 ~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
+|++||+||..... .+.++++..+++|+.|+.++.+++.+.= -.++|++||.....+.+ .
T Consensus 104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~-------------~- 169 (273)
T 4fgs_A 104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTP-------------A- 169 (273)
T ss_dssp EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCT-------------T-
T ss_pred CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCC-------------C-
Confidence 79999999964332 2445788999999999999999987642 23799999987632211 1
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-------HHHHHHHHcCCCCeeeCCCCc
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-------PRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-------~~~i~~~~~g~~~~~~g~g~~ 225 (478)
..+|+.||...+.+.+..+.+ + +.+|+++..+-|+.|-.|...... ..+.+.+....+.-.
T Consensus 170 --~~~Y~asKaav~~ltr~lA~E-l---a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR------ 237 (273)
T 4fgs_A 170 --FSVYAASKAALRSFARNWILD-L---KDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGR------ 237 (273)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH-T---TTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSS------
T ss_pred --chHHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCC------
Confidence 257999999999988766432 2 258999999999999877532211 123333433333322
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+-..+|+|++++.++.. ...-..|+++.|.+|.
T Consensus 238 ---~g~peeiA~~v~FLaSd---------~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 238 ---VGRAEEVAAAALFLASD---------DSSFVTGAELFVDGGS 270 (273)
T ss_dssp ---CBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTT
T ss_pred ---CcCHHHHHHHHHHHhCc---------hhcCccCCeEeECcCh
Confidence 33478999999887752 1224679999987764
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=158.49 Aligned_cols=226 Identities=16% Similarity=0.152 Sum_probs=161.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++++|+++||||++-||.++++.|.++|++ |++.+|+.+.... ......++.++++|++|+++++++++
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAI-PVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF 81 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999999999 9999998764211 11234578899999999998887765
Q ss_pred -CcCEEEEcccCCCCc---hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG---KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~---~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
++|++||+||..... .+.++++..+++|+.|+.++.+++.++ +-.++|++||.....+.+.
T Consensus 82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~------------ 149 (258)
T 4gkb_A 82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQGN------------ 149 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCCSS------------
T ss_pred CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCCCC------------
Confidence 689999999964322 234567888999999999998887643 2258999999876432111
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH------HHHHHHHcCCCCeeeCCCC
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP------RIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~------~~i~~~~~g~~~~~~g~g~ 224 (478)
...|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.|....... .....+....++ |
T Consensus 150 ----~~~Y~asKaav~~ltr~lA~e-l---a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---g--- 215 (258)
T 4gkb_A 150 ----TSGYCASKGAQLALTREWAVA-L---REHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL---G--- 215 (258)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT---T---
T ss_pred ----chHHHHHHHHHHHHHHHHHHH-h---cccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC---C---
Confidence 257999999999988765432 1 2579999999999998775432211 112222222221 1
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+-+-..+|+|++++.++.. ...-..|+++.|.+|-
T Consensus 216 --~R~g~peeiA~~v~fLaS~---------~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 216 --RRFTTPDEIADTAVFLLSP---------RASHTTGEWLFVDGGY 250 (258)
T ss_dssp --TSCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTT
T ss_pred --CCCcCHHHHHHHHHHHhCc---------hhcCccCCeEEECCCc
Confidence 2345578999999887652 1234689999998774
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=161.74 Aligned_cols=226 Identities=19% Similarity=0.169 Sum_probs=162.7
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhc--CcC
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAAR--GVD 80 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~--~~D 80 (478)
+.+++++|+++||||++-||.++++.|.++|++ |++.+|+....... .....++..+++|++|+++++++++ ++|
T Consensus 3 n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~-Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iD 81 (247)
T 4hp8_A 3 NPFSLEGRKALVTGANTGLGQAIAVGLAAAGAE-VVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFD 81 (247)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred CCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCE-EEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCC
Confidence 346789999999999999999999999999999 99999876422111 1233568899999999998887775 589
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cC-CCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
++||+||.....+ +.++++..+++|+.|+..+.+++.+ .+ -.++|++||.....+.. .
T Consensus 82 iLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~-------------~ 148 (247)
T 4hp8_A 82 ILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGI-------------R 148 (247)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCS-------------S
T ss_pred EEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCC-------------C
Confidence 9999999754332 3457889999999999999987654 23 35899999987632211 1
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCCccccc
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
...|+.||.....+.+....+ + +.+|+++..+-|+.|-.|...... +...+.+....+.-.+|
T Consensus 149 ---~~~Y~asKaav~~ltr~lA~E-l---a~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~g-------- 213 (247)
T 4hp8_A 149 ---VPSYTAAKHGVAGLTKLLANE-W---AAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGRWG-------- 213 (247)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSSCB--------
T ss_pred ---ChHHHHHHHHHHHHHHHHHHH-H---hhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCCCc--------
Confidence 257999999999888765432 1 257999999999999776432111 12223344444333333
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
..+|+|.+++.++.. ...-..|+++.|.+|
T Consensus 214 -~peeiA~~v~fLaSd---------~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 214 -HSEDIAGAAVFLSSA---------AADYVHGAILNVDGG 243 (247)
T ss_dssp -CTHHHHHHHHHHTSG---------GGTTCCSCEEEESTT
T ss_pred -CHHHHHHHHHHHhCc---------hhcCCcCCeEEECcc
Confidence 467999999887642 122467889988776
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=171.28 Aligned_cols=168 Identities=19% Similarity=0.136 Sum_probs=128.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--c--------cCCCeEEEEecCCCHHHHHHHhcC--
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--L--------INHGVHCIQGDVVSKIDVEKAARG-- 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~--------~~~~v~~v~gDl~d~~~l~~~l~~-- 78 (478)
+|+|+||||+|+||++++++|+++|++ |++++|+........ . ...++.++.+|++|.+++.++++.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~-v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQ-SFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTC-CEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCc-eEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence 578999999999999999999999998 888877644321110 0 124689999999999999998874
Q ss_pred ---cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHH----HHcCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 79 ---VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC----LEFGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 79 ---~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa----~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
+|+|||+|+...... +..+.+..+++|+.|+.++++++ ++.+..++|++||...+.+.
T Consensus 81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~----------- 149 (327)
T 1jtv_A 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL----------- 149 (327)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCC-----------
Confidence 899999999653321 33456788999999999999996 34567899999998764221
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
|. ...|+.||...|.+.+....+ + ...|+++++++|+.|..+.
T Consensus 150 --~~---~~~Y~aSK~a~~~~~~~la~e-l---~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 150 --PF---NDVYCASKFALEGLCESLAVL-L---LPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp --TT---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCC--
T ss_pred --CC---ChHHHHHHHHHHHHHHHHHHH-h---hhcCcEEEEEEeCcccChH
Confidence 11 257999999999998766431 1 1368999999999998874
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=157.59 Aligned_cols=220 Identities=16% Similarity=0.130 Sum_probs=155.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+++++|++|||||++-||.++++.|.++|++ |++.+|+.... .....++++|++|+++++++++ ++
T Consensus 7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 79 (261)
T 4h15_A 7 LNLRGKRALITAGTKGAGAATVSLFLELGAQ-VLTTARARPEG------LPEELFVEADLTTKEGCAIVAEATRQRLGGV 79 (261)
T ss_dssp CCCTTCEEEESCCSSHHHHHHHHHHHHTTCE-EEEEESSCCTT------SCTTTEEECCTTSHHHHHHHHHHHHHHTSSC
T ss_pred cCCCCCEEEEeccCcHHHHHHHHHHHHcCCE-EEEEECCchhC------CCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3678999999999999999999999999999 99999876522 1233468999999999887765 58
Q ss_pred CEEEEcccCCCC------chhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 80 DCVFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 80 D~ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
|++||+||.... ..+.++++..+++|+.|+.++.+++.+ .+-.++|++||.....+.+
T Consensus 80 DilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~------------ 147 (261)
T 4h15_A 80 DVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLP------------ 147 (261)
T ss_dssp SEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------------
T ss_pred CEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCC------------
Confidence 999999985322 123456788899999999988887764 3556899999987532211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--------------HHHHHHHHcCC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--------------PRIVSLAKLGL 215 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--------------~~~i~~~~~g~ 215 (478)
.....|+.||...+.+.+....+ + +.+|+++.++.|+.|-.|...... ...........
T Consensus 148 ---~~~~~Y~asKaal~~lt~~lA~E-l---a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (261)
T 4h15_A 148 ---ESTTAYAAAKAALSTYSKAMSKE-V---SPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGI 220 (261)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCC
T ss_pred ---CccHHHHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCC
Confidence 01257999999999888765432 1 247999999999999665321111 11111122222
Q ss_pred CCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 216 VPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 216 ~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+. .-+...+|+|++++.++.. ...-..|+.+.|.+|-
T Consensus 221 Pl---------gR~g~peevA~~v~fLaS~---------~a~~itG~~i~VDGG~ 257 (261)
T 4h15_A 221 PL---------GRPAKPEEVANLIAFLASD---------RAASITGAEYTIDGGT 257 (261)
T ss_dssp TT---------SSCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTC
T ss_pred CC---------CCCcCHHHHHHHHHHHhCc---------hhcCccCcEEEECCcC
Confidence 22 2355688999999887742 1224679999997764
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=171.02 Aligned_cols=213 Identities=18% Similarity=0.183 Sum_probs=148.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC-------C-ccc---ccccCCCeEEEEecCCCHHHHHHH
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN-------S-PWS---HLLINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~-------~-~~~---~~~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
+++++|+++||||+|+||++++++|.++|++ |++.++... . ... ......+. ...+|++|.++++++
T Consensus 5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~-Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~ 82 (319)
T 1gz6_A 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKL 82 (319)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHH
Confidence 3567899999999999999999999999998 999876421 0 000 00111111 235899998776655
Q ss_pred hc-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCcccc
Q 011770 76 AR-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIV 140 (478)
Q Consensus 76 l~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~ 140 (478)
++ ++|+|||+||..... .+..+++..+++|+.|+.++.+++. +.+..++|++||....++..
T Consensus 83 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~--- 159 (319)
T 1gz6_A 83 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF--- 159 (319)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT---
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC---
Confidence 43 689999999975432 1334567889999999999998874 45667999999986644321
Q ss_pred CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeee
Q 011770 141 NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 141 ~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~ 220 (478)
+ ...|+.||...+.+.+....+ + ...|+++.+++|+.+ .+......+
T Consensus 160 ---------~----~~~Y~aSK~a~~~~~~~la~e-l---~~~gI~vn~v~PG~~-t~~~~~~~~--------------- 206 (319)
T 1gz6_A 160 ---------G----QANYSAAKLGLLGLANTLVIE-G---RKNNIHCNTIAPNAG-SRMTETVMP--------------- 206 (319)
T ss_dssp ---------T----CHHHHHHHHHHHHHHHHHHHH-T---GGGTEEEEEEEEECC-STTTGGGSC---------------
T ss_pred ---------C----CHHHHHHHHHHHHHHHHHHHH-h---cccCEEEEEEeCCCc-cccccccCC---------------
Confidence 1 257999999999998776432 1 136899999999987 332111000
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.....++..+|+|.+++.++.. .....|+.|++.+|.
T Consensus 207 ---~~~~~~~~p~dvA~~~~~l~s~----------~~~~tG~~~~v~GG~ 243 (319)
T 1gz6_A 207 ---EDLVEALKPEYVAPLVLWLCHE----------SCEENGGLFEVGAGW 243 (319)
T ss_dssp ---HHHHHHSCGGGTHHHHHHHTST----------TCCCCSCEEEEETTE
T ss_pred ---hhhhccCCHHHHHHHHHHHhCc----------hhhcCCCEEEECCCe
Confidence 1123456889999999888752 113478899998774
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=157.32 Aligned_cols=224 Identities=17% Similarity=0.159 Sum_probs=158.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c--cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H--LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~--~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++|+++||||++-||+++++.|.++|++ |++.+|+...... . .....++.++++|++|+++++++++
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999 9999987542111 0 1123568889999999999888775
Q ss_pred -CcCEEEEcccCCCC-c----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMS-G----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~-~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+||.... . .+.++++..+++|+.|+.++.+++.++ +-.++|++||.+...+.+
T Consensus 83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~---------- 152 (254)
T 4fn4_A 83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGF---------- 152 (254)
T ss_dssp SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSS----------
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCC----------
Confidence 68999999996422 1 234567889999999999988887653 556999999987632211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC---cHHHHHHHHH-cCCCCeeeCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---HLPRIVSLAK-LGLVPFKIGEP 223 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~---~~~~~i~~~~-~g~~~~~~g~g 223 (478)
...+|+.||.....+.+..+.+ + +.+|+++..+-|+.|-.|.... .-....+... ...+.-
T Consensus 153 ------~~~~Y~asKaal~~ltr~lA~e-l---a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~----- 217 (254)
T 4fn4_A 153 ------AGAPYTVAKHGLIGLTRSIAAH-Y---GDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSS----- 217 (254)
T ss_dssp ------SCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTCC-----
T ss_pred ------CChHHHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCCC-----
Confidence 1257999999999888765432 2 2479999999999997764221 1111111111 111111
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
-+-..+|+|.+++.++.. ...-..|+++.|.+|-
T Consensus 218 ----R~g~pediA~~v~fLaSd---------~a~~iTG~~i~VDGG~ 251 (254)
T 4fn4_A 218 ----RLAEPEDIANVIVFLASD---------EASFVNGDAVVVDGGL 251 (254)
T ss_dssp ----CCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTG
T ss_pred ----CCcCHHHHHHHHHHHhCc---------hhcCCcCCEEEeCCCc
Confidence 233578999999887752 1224679999998764
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=164.85 Aligned_cols=210 Identities=13% Similarity=0.121 Sum_probs=139.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc----ccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL----LINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~----~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++|+++||||+|+||++++++|+++|++ |++++|+........ ....++.++++|++|.++++++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGAT-VYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999998 999998654211000 113468899999999998877653
Q ss_pred -CcCEEEEcccCCC-----------CchhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccC
Q 011770 78 -GVDCVFHVASYGM-----------SGKEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 78 -~~D~ViHlAa~~~-----------~~~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~ 141 (478)
++|++||+|+.+. ...+..+.+..+++|+.++.++.+++. +.+..++|++||...+.+
T Consensus 82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------ 155 (260)
T 2qq5_A 82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY------ 155 (260)
T ss_dssp TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC------
T ss_pred CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC------
Confidence 4699999995311 111233456788899999988877765 446679999999876311
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeC
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g 221 (478)
.+ ...|+.||...|.+.+.+..+ + ...|+++++++|+.|..+........- ............
T Consensus 156 -------~~----~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~--~~~~~~~~~~~~ 218 (260)
T 2qq5_A 156 -------MF----NVPYGVGKAACDKLAADCAHE-L---RRHGVSCVSLWPGIVQTELLKEHMAKE--EVLQDPVLKQFK 218 (260)
T ss_dssp -------CS----SHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEECCCSCTTTC---------------------
T ss_pred -------CC----CCchHHHHHHHHHHHHHHHHH-h---ccCCeEEEEEecCccccHHHHHhhccc--cccchhHHHHHH
Confidence 01 257999999999998766421 1 136899999999999887533211100 000000000000
Q ss_pred CCCccccceeHHHHHHHHHHHHh
Q 011770 222 EPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
. ....+...+|+|++++.++.
T Consensus 219 ~--~~~~~~~pe~va~~v~~l~s 239 (260)
T 2qq5_A 219 S--AFSSAETTELSGKCVVALAT 239 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHT
T ss_pred h--hhccCCCHHHHHHHHHHHhc
Confidence 0 01123578999999998875
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-17 Score=160.17 Aligned_cols=226 Identities=12% Similarity=0.035 Sum_probs=148.3
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHHcCCceEEEEecCC-----------CCccc-ccccCCC----eEEEEec----
Q 011770 8 GIEGKTFLVTGGL--GHVGSALCLELVRRGAYQVRAFDLRT-----------NSPWS-HLLINHG----VHCIQGD---- 65 (478)
Q Consensus 8 ~~~~~~ILVTGat--GfIG~~Lv~~L~~~G~~~V~~l~r~~-----------~~~~~-~~~~~~~----v~~v~gD---- 65 (478)
++++|+++||||+ |+||++++++|+++|++ |++++|++ ..... ....... ...+.+|
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCe-EEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceecc
Confidence 4678999999999 99999999999999998 99998531 11000 0000011 2344443
Q ss_pred ----CC----C--------HHHHHHHh-------cCcCEEEEcccCCC------CchhhhchhhhhHhhhHHHHHHHHHH
Q 011770 66 ----VV----S--------KIDVEKAA-------RGVDCVFHVASYGM------SGKEMLQFGRVDEVNINGTCHVIEAC 116 (478)
Q Consensus 66 ----l~----d--------~~~l~~~l-------~~~D~ViHlAa~~~------~~~~~~~~~~~~~vNv~gt~nll~aa 116 (478)
+. | .+++++++ .++|++||+||... ...+..+++..+++|+.|+.++++++
T Consensus 84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 163 (297)
T 1d7o_A 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 22 1 33344433 36899999998632 11233456788999999999999999
Q ss_pred HHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCc
Q 011770 117 LEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194 (478)
Q Consensus 117 ~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~ 194 (478)
.+.- -.++|++||...+.+.+ . ....|+.||...+.+.+....+ +. ..+|+++.+++|+.
T Consensus 164 ~~~m~~~g~iv~isS~~~~~~~~-------------~--~~~~Y~asKaa~~~~~~~la~e-~~--~~~gi~vn~v~PG~ 225 (297)
T 1d7o_A 164 LPIMNPGGASISLTYIASERIIP-------------G--YGGGMSSAKAALESDTRVLAFE-AG--RKQNIRVNTISAGP 225 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSCCT-------------T--CTTTHHHHHHHHHHHHHHHHHH-HH--HHHCCEEEEEEECC
T ss_pred HHHhccCceEEEEeccccccCCC-------------C--cchHHHHHHHHHHHHHHHHHHH-hC--cccCcEEEEEeccc
Confidence 8751 15899999987632211 0 0136999999999998776531 10 01589999999999
Q ss_pred eeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 195 IYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 195 vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
|++|..... .+.+...+....+. ..+...+|+|++++.++... .....|+.+++.+|.
T Consensus 226 v~T~~~~~~~~~~~~~~~~~~~~p~---------~r~~~pedvA~~v~~l~s~~---------~~~itG~~i~vdgG~ 285 (297)
T 1d7o_A 226 LGSRAAKAIGFIDTMIEYSYNNAPI---------QKTLTADEVGNAAAFLVSPL---------ASAITGATIYVDNGL 285 (297)
T ss_dssp CBCCCSSCCSHHHHHHHHHHHHSSS---------CCCBCHHHHHHHHHHHTSGG---------GTTCCSCEEEESTTG
T ss_pred cccchhhhccccHHHHHHhhccCCC---------CCCCCHHHHHHHHHHHhCcc---------ccCCCCCEEEECCCc
Confidence 999875432 23333333322211 23567899999998877521 124578899998874
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-17 Score=155.49 Aligned_cols=225 Identities=15% Similarity=0.054 Sum_probs=159.6
Q ss_pred CCCCCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCccc-----ccccCCCeEEEEecCCCHHHHHHHhc-
Q 011770 6 NEGIEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HLLINHGVHCIQGDVVSKIDVEKAAR- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~~~~~~~v~~v~gDl~d~~~l~~~l~- 77 (478)
|+++++|+++||||+| -||.++++.|.++|++ |++.+|+...... ......++.++++|++|+++++++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~-Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAK-LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHH
Confidence 4568899999999987 8999999999999999 9999987653211 01123468899999999999887765
Q ss_pred ------CcCEEEEcccCCCCch--------hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccC
Q 011770 78 ------GVDCVFHVASYGMSGK--------EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 78 ------~~D~ViHlAa~~~~~~--------~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~ 141 (478)
++|++||+|+...... ..++....+++|+.++..+..++...- -.++|++||.....+.
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~----- 154 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAV----- 154 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCC-----
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCc-----
Confidence 6899999999653221 122345567899999998888887642 2489999998753221
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCee
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFK 219 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~ 219 (478)
|. ...|+.||...+.+.+....+ + +.+|+++.++.|+.|-.|.... ..+...+.+....+.-.
T Consensus 155 --------~~---~~~Y~asKaal~~ltr~lA~E-l---a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R 219 (256)
T 4fs3_A 155 --------QN---YNVMGVAKASLEANVKYLALD-L---GPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKR 219 (256)
T ss_dssp --------TT---THHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSS
T ss_pred --------cc---chhhHHHHHHHHHHHHHHHHH-h---CccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCCC
Confidence 11 267999999999888765431 1 2479999999999998765332 23444455544433322
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
+...+|+|++++.++.. ...-..|+++.|.+|
T Consensus 220 ---------~g~peevA~~v~fL~Sd---------~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 220 ---------NVDQVEVGKTAAYLLSD---------LSSGVTGENIHVDSG 251 (256)
T ss_dssp ---------CCCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTT
T ss_pred ---------CcCHHHHHHHHHHHhCc---------hhcCccCCEEEECcC
Confidence 33478999999887752 122467899988776
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-18 Score=159.85 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=143.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEE-e--cCCCCcccccccCCCeEEEEecCCCHHHH-HHHh---cCcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAF-D--LRTNSPWSHLLINHGVHCIQGDVVSKIDV-EKAA---RGVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l-~--r~~~~~~~~~~~~~~v~~v~gDl~d~~~l-~~~l---~~~D~Vi 83 (478)
+|+++||||+|+||++++++|+++|++ |+++ + |+............+.+.. |..+.+.+ +++. .++|+||
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~r~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~g~iD~lv 77 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYT-VVCHDASFADAAERQRFESENPGTIAL--AEQKPERLVDATLQHGEAIDTIV 77 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHHHHHHHHHSTTEEEC--CCCCGGGHHHHHGGGSSCEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCcCCHHHHHHHHHHhCCCccc--CHHHHHHHHHHHHHHcCCCCEEE
Confidence 478999999999999999999999998 9999 5 7643211100000222222 44443332 2222 3689999
Q ss_pred EcccCCCC---c----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 84 HVASYGMS---G----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 84 HlAa~~~~---~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
|+||.... . .+..+.+..+++|+.|+.++++++. +.+..++|++||...+.+. |
T Consensus 78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-------------~-- 142 (244)
T 1zmo_A 78 SNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPL-------------A-- 142 (244)
T ss_dssp ECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC-------------T--
T ss_pred ECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCC-------------C--
Confidence 99996543 1 1334567789999999999999886 4456799999998764221 1
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC---CCcH-HHHHHHHHc-CCCCeeeCCCCccc
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE---ERHL-PRIVSLAKL-GLVPFKIGEPSVKT 227 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~---~~~~-~~~i~~~~~-g~~~~~~g~g~~~~ 227 (478)
....|+.||...|.+.+....+ + ...++++++++|+.|..+.. .... +........ ..+ ..
T Consensus 143 -~~~~Y~asK~a~~~~~~~la~e-~---~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p---------~~ 208 (244)
T 1zmo_A 143 -YNPLYGPARAATVALVESAAKT-L---SRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVP---------LG 208 (244)
T ss_dssp -TCTTHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHHHCT---------TC
T ss_pred -CchHHHHHHHHHHHHHHHHHHH-H---hhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhcCCC---------CC
Confidence 1257999999999998766431 1 13689999999999987753 2110 011111111 111 12
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+...+|+|++++.++.. ......|+.+.+.+|.
T Consensus 209 r~~~pe~vA~~v~~l~s~---------~~~~~tG~~i~vdgG~ 242 (244)
T 1zmo_A 209 RLGRPDEMGALITFLASR---------RAAPIVGQFFAFTGGY 242 (244)
T ss_dssp SCBCHHHHHHHHHHHHTT---------TTGGGTTCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHcCc---------cccCccCCEEEeCCCC
Confidence 366789999999988762 1224568888887663
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=164.40 Aligned_cols=197 Identities=17% Similarity=0.171 Sum_probs=146.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c-----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H-----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~-----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++|||||+|.||.++++.|.++|+..|++++|+...... . ......+.++.+|++|.+++.++++
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999548888876432110 0 1123468899999999999999886
Q ss_pred CcCEEEEcccCC-CCc----hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 78 GVDCVFHVASYG-MSG----KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 78 ~~D~ViHlAa~~-~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
++|+|||+||.. ... .+..+.+..+++|+.|+.++.+++.+.+.++||++||.+.+++...
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~~g-------------- 384 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGSGG-------------- 384 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTCTT--------------
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCCCC--------------
Confidence 379999999975 221 2334567788999999999999999998899999999887554321
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHH-HcCCCCeeeCCCCcccccee
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLA-KLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~-~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.+|...+.+..+.. ..|++++++.|+.+.+++.... ......+ ..| ...+.
T Consensus 385 --~~~YaAaKa~ldala~~~~--------~~Gi~v~sV~pG~w~~~gm~~~-~~~~~~l~~~g------------~~~l~ 441 (496)
T 3mje_A 385 --QPGYAAANAYLDALAEHRR--------SLGLTASSVAWGTWGEVGMATD-PEVHDRLVRQG------------VLAME 441 (496)
T ss_dssp --CHHHHHHHHHHHHHHHHHH--------HTTCCCEEEEECEESSSCC-------CHHHHHTT------------EEEEC
T ss_pred --cHHHHHHHHHHHHHHHHHH--------hcCCeEEEEECCcccCCccccC-hHHHHHHHhcC------------CCCCC
Confidence 2579999999999987664 4789999999999988765321 1111111 111 12456
Q ss_pred HHHHHHHHHHHHh
Q 011770 232 VDNLVLALILASM 244 (478)
Q Consensus 232 V~Dva~a~~~a~~ 244 (478)
.++.++++..++.
T Consensus 442 pe~~~~~l~~~l~ 454 (496)
T 3mje_A 442 PEHALGALDQMLE 454 (496)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 7899999988887
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=159.05 Aligned_cols=197 Identities=16% Similarity=0.108 Sum_probs=143.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEE-ecCCCC------------cccc-----cccCCCeEEEEecCCCHHH
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAF-DLRTNS------------PWSH-----LLINHGVHCIQGDVVSKID 71 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l-~r~~~~------------~~~~-----~~~~~~v~~v~gDl~d~~~ 71 (478)
+++++|||||+|.||.++++.|.++|+..|+++ +|+... .... ......+.++.+|++|.++
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~ 329 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA 329 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence 568999999999999999999999999845555 676432 0000 0123468999999999999
Q ss_pred HHHHhcC------cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcC-----CCeEEEEeccceeeCC
Q 011770 72 VEKAARG------VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFG-----IQRLVYVSTYNVVFGG 136 (478)
Q Consensus 72 l~~~l~~------~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~-----v~r~V~~SS~~v~~g~ 136 (478)
+.++++. +|+|||+||..... .+..+.+..+++|+.|+.++.+++.... ..+||++||.+.+.+.
T Consensus 330 v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g~ 409 (525)
T 3qp9_A 330 AARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGG 409 (525)
T ss_dssp HHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTCC
T ss_pred HHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCCC
Confidence 9998864 69999999975332 2334567788999999999999999876 7899999998875443
Q ss_pred ccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHH-HcCC
Q 011770 137 KEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLA-KLGL 215 (478)
Q Consensus 137 ~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~-~~g~ 215 (478)
.. ...|+.+|...+.+..+.. ..|++++++.|+.+ +.+.... ......+ ..|
T Consensus 410 ~g----------------~~~YaaaKa~l~~lA~~~~--------~~gi~v~sI~pG~~-~tgm~~~-~~~~~~~~~~g- 462 (525)
T 3qp9_A 410 AG----------------QGAYAAGTAFLDALAGQHR--------ADGPTVTSVAWSPW-EGSRVTE-GATGERLRRLG- 462 (525)
T ss_dssp TT----------------CHHHHHHHHHHHHHHTSCC--------SSCCEEEEEEECCB-TTSGGGS-SHHHHHHHHTT-
T ss_pred CC----------------CHHHHHHHHHHHHHHHHHH--------hCCCCEEEEECCcc-ccccccc-hhhHHHHHhcC-
Confidence 21 2579999999998865442 57999999999999 3332110 0111111 112
Q ss_pred CCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 216 VPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 216 ~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
...+..+++++++..++.
T Consensus 463 -----------~~~l~pee~a~~l~~~l~ 480 (525)
T 3qp9_A 463 -----------LRPLAPATALTALDTALG 480 (525)
T ss_dssp -----------BCCBCHHHHHHHHHHHHH
T ss_pred -----------CCCCCHHHHHHHHHHHHh
Confidence 134678999999999887
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=151.01 Aligned_cols=231 Identities=13% Similarity=0.051 Sum_probs=128.8
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHHcCCceEEEEecCC----------CCcccc--------------cccCC----
Q 011770 8 GIEGKTFLVTGG--LGHVGSALCLELVRRGAYQVRAFDLRT----------NSPWSH--------------LLINH---- 57 (478)
Q Consensus 8 ~~~~~~ILVTGa--tGfIG~~Lv~~L~~~G~~~V~~l~r~~----------~~~~~~--------------~~~~~---- 57 (478)
++++|+++|||| +|+||++++++|+++|++ |++++|++ ...... .....
T Consensus 6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (319)
T 2ptg_A 6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGAR-VLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDL 84 (319)
T ss_dssp CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCE-EEEEECHHHHHHHHC--------------------------------
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCE-EEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccc
Confidence 467889999999 899999999999999998 99998642 100000 00000
Q ss_pred -CeEEEEecC------------CC--------HHHHHHHh-------cCcCEEEEcccCCC--C----chhhhchhhhhH
Q 011770 58 -GVHCIQGDV------------VS--------KIDVEKAA-------RGVDCVFHVASYGM--S----GKEMLQFGRVDE 103 (478)
Q Consensus 58 -~v~~v~gDl------------~d--------~~~l~~~l-------~~~D~ViHlAa~~~--~----~~~~~~~~~~~~ 103 (478)
..+++.+|+ +| .+++++++ .++|++||+||... . ..+..+++..++
T Consensus 85 ~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~ 164 (319)
T 2ptg_A 85 VFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVS 164 (319)
T ss_dssp CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence 124444443 22 22344333 36899999998642 1 123345677889
Q ss_pred hhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCC
Q 011770 104 VNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNN 181 (478)
Q Consensus 104 vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~ 181 (478)
+|+.|+.++++++.+.- -.++|++||...+.+.+ . ....|+.||...+.+.+....+ +.+
T Consensus 165 vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~-------------~--~~~~Y~asKaal~~l~~~la~e-l~~-- 226 (319)
T 2ptg_A 165 SSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVIP-------------G--YGGGMSSAKAALESDCRTLAFE-AGR-- 226 (319)
T ss_dssp HHTHHHHHHHHHHGGGEEEEEEEEEEEECC---------------------------------THHHHHHHHHH-HHH--
T ss_pred HhhHHHHHHHHHHHHHHhcCceEEEEeccccccccC-------------c--cchhhHHHHHHHHHHHHHHHHH-hcc--
Confidence 99999999999998751 15899999987632211 0 0136999999999988766431 100
Q ss_pred CCcceEEEEeCCceeCCCCCCcHH----HHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCC
Q 011770 182 RKCLYTCAVRPAAIYGPGEERHLP----RIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRP 257 (478)
Q Consensus 182 ~~gl~~~ilRp~~vyGp~~~~~~~----~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~ 257 (478)
.+|+++.+++|+.|..+....... .+...... ..........+...+|+|++++.++... ..
T Consensus 227 ~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~r~~~peevA~~v~~L~s~~---------~~ 292 (319)
T 2ptg_A 227 ARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAID-----YSEANAPLQKELESDDVGRAALFLLSPL---------AR 292 (319)
T ss_dssp HHCCEEEEEEECCCC------------------------------------CCCHHHHHHHHHHHTSGG---------GT
T ss_pred ccCeeEEEEeeCCccChhhhhcccccchhhHHHHHH-----HHhccCCCCCCCCHHHHHHHHHHHhCcc---------cC
Confidence 158999999999998764221100 00000000 0000011123567899999999887521 22
Q ss_pred CCCCceEEecCCCC
Q 011770 258 IASGQPYFVSDGFP 271 (478)
Q Consensus 258 ~~~g~~yni~~g~~ 271 (478)
...|+.+.+.+|..
T Consensus 293 ~itG~~i~vdGG~~ 306 (319)
T 2ptg_A 293 AVTGATLYVDNGLH 306 (319)
T ss_dssp TCCSCEEEESTTCT
T ss_pred CccCCEEEECCCce
Confidence 46788999987754
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=148.33 Aligned_cols=226 Identities=13% Similarity=0.032 Sum_probs=143.1
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHHcCCceEEEEecCC-----------CCccc-ccccCC----CeEEEEecC---
Q 011770 8 GIEGKTFLVTGG--LGHVGSALCLELVRRGAYQVRAFDLRT-----------NSPWS-HLLINH----GVHCIQGDV--- 66 (478)
Q Consensus 8 ~~~~~~ILVTGa--tGfIG~~Lv~~L~~~G~~~V~~l~r~~-----------~~~~~-~~~~~~----~v~~v~gDl--- 66 (478)
++++|+++|||| +|+||++++++|+++|++ |++++|++ ..... ...... .+.++.+|+
T Consensus 6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (315)
T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGAR-VALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFD 84 (315)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCE-EEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCS
T ss_pred cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCE-EEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccccc
Confidence 467899999999 899999999999999998 99998642 00000 000001 124444443
Q ss_pred ---------CC--------HHHHHHHh-------cCcCEEEEcccCCC---C---chhhhchhhhhHhhhHHHHHHHHHH
Q 011770 67 ---------VS--------KIDVEKAA-------RGVDCVFHVASYGM---S---GKEMLQFGRVDEVNINGTCHVIEAC 116 (478)
Q Consensus 67 ---------~d--------~~~l~~~l-------~~~D~ViHlAa~~~---~---~~~~~~~~~~~~vNv~gt~nll~aa 116 (478)
+| .+++++++ .++|++||+||... . ..+..+++..+++|+.|+.++++++
T Consensus 85 ~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 164 (315)
T 2o2s_A 85 KPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHF 164 (315)
T ss_dssp STTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHH
Confidence 32 33444433 36899999999642 1 1233456788999999999999999
Q ss_pred HHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCc
Q 011770 117 LEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAA 194 (478)
Q Consensus 117 ~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~ 194 (478)
.+.- -.++|++||...+.+. |. ....|+.||...+.+.+....+ +. ..+|+++.+++|+.
T Consensus 165 ~~~m~~~g~Iv~isS~~~~~~~-------------~~--~~~~Y~asKaal~~l~~~la~e-l~--~~~gIrvn~v~PG~ 226 (315)
T 2o2s_A 165 GPIMNEGGSAVTLSYLAAERVV-------------PG--YGGGMSSAKAALESDTRTLAWE-AG--QKYGVRVNAISAGP 226 (315)
T ss_dssp STTEEEEEEEEEEEEGGGTSCC-------------TT--CCTTHHHHHHHHHHHHHHHHHH-HH--HHTCCEEEEEEECC
T ss_pred HHHHhcCCEEEEEecccccccC-------------CC--ccHHHHHHHHHHHHHHHHHHHH-hC--cccCeEEEEEeccc
Confidence 7641 1589999998763211 10 0136999999999998766431 10 01589999999999
Q ss_pred eeCCCCC--------CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEe
Q 011770 195 IYGPGEE--------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFV 266 (478)
Q Consensus 195 vyGp~~~--------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni 266 (478)
|..+... .....+...+....+. ..+...+|+|++++.++... .....|+.+.+
T Consensus 227 v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------~r~~~pedvA~~v~~L~s~~---------~~~itG~~i~v 288 (315)
T 2o2s_A 227 LKSRAASAIGKSGEKSFIDYAIDYSYNNAPL---------RRDLHSDDVGGAALFLLSPL---------ARAVSGVTLYV 288 (315)
T ss_dssp CCCHHHHHTTCSSSSCHHHHHHHHHHHHSSS---------CCCCCHHHHHHHHHHHTSGG---------GTTCCSCEEEE
T ss_pred ccchhhhhccccccchhHHHHHHHHhccCCC---------CCCCCHHHHHHHHHHHhCch---------hccCcCCEEEE
Confidence 9765210 0111111111111111 12457899999998877521 22467888888
Q ss_pred cCCC
Q 011770 267 SDGF 270 (478)
Q Consensus 267 ~~g~ 270 (478)
.+|.
T Consensus 289 dGG~ 292 (315)
T 2o2s_A 289 DNGL 292 (315)
T ss_dssp STTG
T ss_pred CCCe
Confidence 8774
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-16 Score=166.03 Aligned_cols=212 Identities=18% Similarity=0.168 Sum_probs=141.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC---------CCccc--ccccCCCeEEEEecCCCHHHHHHH
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT---------NSPWS--HLLINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~---------~~~~~--~~~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
.++++|+++||||+|.||++++++|+++|++ |++++|.. ..... ......+.. ..+|++|.++++++
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~-Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~D~~d~~~~~~~ 92 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAK-VVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE-AVADYNSVIDGAKV 92 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEC--------------CHHHHHHHHHHTTCC-EEECCCCGGGHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcccccccCCHHHHHHHHHHHHHhCCe-EEEEeCCHHHHHHH
Confidence 4578899999999999999999999999999 99998722 11100 001111222 34899999888877
Q ss_pred hc-------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHH----HcCCCeEEEEeccceeeCCcccc
Q 011770 76 AR-------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACL----EFGIQRLVYVSTYNVVFGGKEIV 140 (478)
Q Consensus 76 l~-------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~----~~~v~r~V~~SS~~v~~g~~~~~ 140 (478)
++ ++|++||+||..... .+..+++..+++|+.|+.++.+++. +.+..++|++||.+.+++...
T Consensus 93 ~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~~-- 170 (613)
T 3oml_A 93 IETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFG-- 170 (613)
T ss_dssp HC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCTT--
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCC--
Confidence 76 579999999975332 2345678889999999999999984 445679999999877544211
Q ss_pred CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeee
Q 011770 141 NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKI 220 (478)
Q Consensus 141 ~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~ 220 (478)
...|+.||...+.+.+....+ + ...|+++.++.|+.+ .+. ..+..
T Consensus 171 --------------~~~Y~asKaal~~lt~~la~e-~---~~~gI~vn~v~Pg~~-t~~------------~~~~~---- 215 (613)
T 3oml_A 171 --------------QVNYTAAKMGLIGLANTVAIE-G---ARNNVLCNVIVPTAA-SRM------------TEGIL---- 215 (613)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEEC-------------------CCCC----
T ss_pred --------------ChHHHHHHHHHHHHHHHHHHH-h---CccCeEEEEEECCCC-Chh------------hhhcc----
Confidence 257999999999988766432 1 146899999999854 111 11110
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
+......+..+|+|.+++.++.. .....|+.+++.+|
T Consensus 216 --~~~~~~~~~pedvA~~v~~L~s~----------~~~~tG~~i~vdGG 252 (613)
T 3oml_A 216 --PDILFNELKPKLIAPVVAYLCHE----------SCEDNGSYIESAAG 252 (613)
T ss_dssp --CHHHHTTCCGGGTHHHHHHTTST----------TCCCCSCEEEEETT
T ss_pred --chhhhhcCCHHHHHHHHHHhcCC----------CcCCCceEEEECCC
Confidence 01223445788999999877652 12356788887765
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=141.35 Aligned_cols=167 Identities=8% Similarity=-0.044 Sum_probs=118.6
Q ss_pred CCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCC-------------CCccccc---ccCCCeEEEEecCCCH--H
Q 011770 11 GKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRT-------------NSPWSHL---LINHGVHCIQGDVVSK--I 70 (478)
Q Consensus 11 ~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~-------------~~~~~~~---~~~~~v~~v~gDl~d~--~ 70 (478)
+|+++||||++ .||.+++++|.++|++ |++.++++ ....... .....+.++.+|+++. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~-Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVK-IIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCE-EEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 57999999875 9999999999999998 99776543 1000000 1123367888999877 5
Q ss_pred ------------------HHHHHhc-------CcCEEEEcccCCC--Cc----hhhhchhhhhHhhhHHHHHHHHHHHHc
Q 011770 71 ------------------DVEKAAR-------GVDCVFHVASYGM--SG----KEMLQFGRVDEVNINGTCHVIEACLEF 119 (478)
Q Consensus 71 ------------------~l~~~l~-------~~D~ViHlAa~~~--~~----~~~~~~~~~~~vNv~gt~nll~aa~~~ 119 (478)
++.++++ ++|++||+||+.. .. .+..+....+++|+.|+.++.+++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555443 6899999999631 11 133456788999999999999998865
Q ss_pred CC--CeEEEEeccceeeCCccccCCCCCCCCCCCCccCC-chHhhHHHHHHHHHHHcCCCCccCCC-CcceEEEEeCCce
Q 011770 120 GI--QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD-SYGRSKSVAEQLVLKSNGRPFKKNNR-KCLYTCAVRPAAI 195 (478)
Q Consensus 120 ~v--~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~-~Y~~sK~~aE~~v~~~~~~~~~~~~~-~gl~~~ilRp~~v 195 (478)
-. .++|++||.....+. |. .. .|+.||...+.+.+....+ + .. .|+++.++.|+.|
T Consensus 161 m~~~g~Iv~isS~~~~~~~-------------~~---~~~~Y~asKaal~~~~~~la~e-l---~~~~gI~vn~v~PG~v 220 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQKVV-------------PG---YGGGMSSAKAALESDTRVLAYH-L---GRNYNIRINTISAGPL 220 (329)
T ss_dssp EEEEEEEEEEECGGGTSCC-------------TT---CTTTHHHHHHHHHHHHHHHHHH-H---HHHHCCEEEEEEECCC
T ss_pred HhhCCeEEEEeCccccCCC-------------Cc---chHHHHHHHHHHHHHHHHHHHH-h---CCccCeEEEEEeccee
Confidence 22 489999998753211 11 12 6999999999888765432 1 13 5899999999999
Q ss_pred eCC
Q 011770 196 YGP 198 (478)
Q Consensus 196 yGp 198 (478)
..+
T Consensus 221 ~T~ 223 (329)
T 3lt0_A 221 KSR 223 (329)
T ss_dssp CCH
T ss_pred ech
Confidence 765
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-13 Score=153.35 Aligned_cols=232 Identities=17% Similarity=0.115 Sum_probs=152.5
Q ss_pred CCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEEecCCCCcccc-------cc--cCCCeEEEEecCCCHHHHHHHh
Q 011770 7 EGIEGKTFLVTGGLGH-VGSALCLELVRRGAYQVRAFDLRTNSPWSH-------LL--INHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 7 ~~~~~~~ILVTGatGf-IG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-------~~--~~~~v~~v~gDl~d~~~l~~~l 76 (478)
++++++++|||||+|. ||.++++.|+++|++ |++++++....... .. ....+.++.+|++|.+++.+++
T Consensus 648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~-VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAK-VIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp BCCTTCEEEEESCCTTSHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCE-EEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 3467899999999999 999999999999998 99987554321100 00 1345888999999999988876
Q ss_pred c-----------CcCEEEEcccCCCCc-h----h--hhchhhhhHhhhHHHHHHHHHHHHc------CCCeEEEEeccce
Q 011770 77 R-----------GVDCVFHVASYGMSG-K----E--MLQFGRVDEVNINGTCHVIEACLEF------GIQRLVYVSTYNV 132 (478)
Q Consensus 77 ~-----------~~D~ViHlAa~~~~~-~----~--~~~~~~~~~vNv~gt~nll~aa~~~------~v~r~V~~SS~~v 132 (478)
+ ++|+|||+||+.... . + ..+....+++|+.|+.+++++++.. +-.++|++||...
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag 806 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHG 806 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSS
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhh
Confidence 3 489999999975432 1 1 3456788999999999998874322 1248999999865
Q ss_pred eeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCcee-CCCCCCcHHHHHHHH
Q 011770 133 VFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIY-GPGEERHLPRIVSLA 211 (478)
Q Consensus 133 ~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vy-Gp~~~~~~~~~i~~~ 211 (478)
+.++ ...|+.||...+.++......++. .+ ++++++.|+.+- .+.... ........
T Consensus 807 ~~gg------------------~~aYaASKAAL~aLt~~laAeEla---~~-IrVNaVaPG~V~gT~m~~~-~~~~~~~~ 863 (1878)
T 2uv9_A 807 TFGN------------------DGLYSESKLALETLFNRWYSESWG---NY-LTICGAVIGWTRGTGLMSA-NNLVAEGV 863 (1878)
T ss_dssp SSSC------------------CSSHHHHHHHHTTHHHHHHHSTTT---TT-EEEEEEEECCBCCTTSCSH-HHHTHHHH
T ss_pred ccCC------------------chHHHHHHHHHHHHHHHHHHHHcC---CC-eEEEEEEecceecCccccc-chhhHHHH
Confidence 4321 156999999999987654332222 23 999999999997 442221 11111111
Q ss_pred HcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEec--CCC--CCCHHHHHHHH
Q 011770 212 KLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVS--DGF--PINTFEFIGPL 281 (478)
Q Consensus 212 ~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~--~g~--~~s~~e~~~~i 281 (478)
.. ... .+...+|+|++++.++.... .....|+.+.+. +|. ..++.++...+
T Consensus 864 ~~-~pl----------r~~sPeEVA~avlfLaSd~a--------~s~iTGq~I~VDVDGG~~~~~~l~el~~~l 918 (1878)
T 2uv9_A 864 EK-LGV----------RTFSQQEMAFNLLGLMAPAI--------VNLCQSDPVFADLNGGLQFIPDLKGLMTKL 918 (1878)
T ss_dssp HT-TTC----------CCBCHHHHHHHHHHHHSHHH--------HHHHTTSCEEEEESCSGGGCTTHHHHHHHH
T ss_pred Hh-cCC----------CCCCHHHHHHHHHHHhCCcc--------cccccCcEEEEEcCCCccccCCHHHHHHHH
Confidence 11 110 23378999999988764200 012357777763 332 24555555444
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=152.83 Aligned_cols=169 Identities=20% Similarity=0.176 Sum_probs=123.2
Q ss_pred CCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEEe-cCCCCccc--ccc------cCCCeEEEEecCCCHHHHHHHh
Q 011770 7 EGIEGKTFLVTGGLGH-VGSALCLELVRRGAYQVRAFD-LRTNSPWS--HLL------INHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 7 ~~~~~~~ILVTGatGf-IG~~Lv~~L~~~G~~~V~~l~-r~~~~~~~--~~~------~~~~v~~v~gDl~d~~~l~~~l 76 (478)
+++++|++|||||+|. ||.++++.|+++|++ |++++ |+...... ... ....+.++.+|++|.+++++++
T Consensus 472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA~-VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLV 550 (1688)
T 2pff_A 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAK-VVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 550 (1688)
T ss_dssp CCCCSCCEEECSCSSSSTHHHHHHHHHHHTCE-EEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHH
T ss_pred cccCCCEEEEECCChHHHHHHHHHHHHHCcCE-EEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHH
Confidence 3467889999999998 999999999999998 99885 43322111 001 1235788999999999888776
Q ss_pred c-------------CcCEEEEcccCCCCc-h----h--hhchhhhhHhhhHHHHHHHHHHHHc------CCCeEEEEecc
Q 011770 77 R-------------GVDCVFHVASYGMSG-K----E--MLQFGRVDEVNINGTCHVIEACLEF------GIQRLVYVSTY 130 (478)
Q Consensus 77 ~-------------~~D~ViHlAa~~~~~-~----~--~~~~~~~~~vNv~gt~nll~aa~~~------~v~r~V~~SS~ 130 (478)
+ ++|+|||+||..... . + ..+....+++|+.|+.+++++++.. +-.++|++||.
T Consensus 551 e~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSi 630 (1688)
T 2pff_A 551 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPN 630 (1688)
T ss_dssp HHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSC
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEECh
Confidence 3 489999999975433 1 1 3456788999999999999988432 11489999997
Q ss_pred ceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 131 ~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
....++ ...|+.||+..+.++.......+. .. ++++++.|+.|.|.
T Consensus 631 AG~~Gg------------------~saYaASKAAL~aLttrsLAeEla---~~-IRVNaVaPG~V~TT 676 (1688)
T 2pff_A 631 HGTFGG------------------DGMYSESKLSLETLFNRWHSESWA---NQ-LTVCGAIIGWTRGT 676 (1688)
T ss_dssp TTTSSC------------------BTTHHHHHHHHTHHHHHTTTSSCT---TT-EECCCCCCCCCCCC
T ss_pred HhccCC------------------chHHHHHHHHHHHHHHHHHHHHcC---CC-eEEEEEEECcCcCC
Confidence 653220 157999999999985444433332 23 99999999999853
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=139.28 Aligned_cols=231 Identities=15% Similarity=0.165 Sum_probs=150.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc--cCCCeEEEEecC-CCHHHHH-HH---hcCcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL--INHGVHCIQGDV-VSKIDVE-KA---ARGVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~--~~~~v~~v~gDl-~d~~~l~-~~---l~~~D 80 (478)
++++|+++||||++-||.+++++|.++|++ |++.+++......... ....+..+.+|+ .+.+.+. ++ +.++|
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~-Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iD 397 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAK-VVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTID 397 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCC
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCE-EEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCC
Confidence 467899999999999999999999999999 9998864321111111 123455677888 5544332 22 33689
Q ss_pred EEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
++||+||+.... .+..+++..+++|+.|+.++.+++..+ +-.++|++||.+..++...
T Consensus 398 iLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~-------------- 463 (604)
T 2et6_A 398 ILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFG-------------- 463 (604)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTT--------------
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCC--------------
Confidence 999999975332 234567889999999999998887643 4458999999876432111
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
...|+.||...+.+.+....+ + ..+|+++.++.|+ +-.+ ....... . ...+....
T Consensus 464 --~~~Y~asKaal~~lt~~la~E-l---~~~gIrVn~v~PG-~~T~----m~~~~~~----~----------~~~~~~~p 518 (604)
T 2et6_A 464 --QANYSSSKAGILGLSKTMAIE-G---AKNNIKVNIVAPH-AETA----MTLSIMR----E----------QDKNLYHA 518 (604)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEEC-CCCC----C-----------------------CCSSCG
T ss_pred --ChhHHHHHHHHHHHHHHHHHH-h---CccCeEEEEEcCC-CCCc----cccccCc----h----------hhccCCCH
Confidence 257999999999888765432 1 1478999999997 2211 1111000 0 01123467
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC-----------------CCCHHHHHHHHHHhcCCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF-----------------PINTFEFIGPLLKTLDYD 288 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~-----------------~~s~~e~~~~i~~~lg~~ 288 (478)
+|++.+++.++.. ... ..|+.+.+.+|. ..+..++.+...+....+
T Consensus 519 e~vA~~v~~L~s~---------~~~-itG~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 581 (604)
T 2et6_A 519 DQVAPLLVYLGTD---------DVP-VTGETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEITDFT 581 (604)
T ss_dssp GGTHHHHHHTTST---------TCC-CCSCEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhCC---------ccC-CCCcEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHHhccc
Confidence 8999988876541 123 678888887652 245556666555555443
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=149.98 Aligned_cols=167 Identities=20% Similarity=0.175 Sum_probs=123.7
Q ss_pred CCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEEecCCCCcccc---c----c--cCCCeEEEEecCCCHHHHHHHh
Q 011770 7 EGIEGKTFLVTGGLGH-VGSALCLELVRRGAYQVRAFDLRTNSPWSH---L----L--INHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 7 ~~~~~~~ILVTGatGf-IG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~----~--~~~~v~~v~gDl~d~~~l~~~l 76 (478)
+++++|++|||||+|. ||.++++.|+++|++ |++++++....... . . ....+.++.+|++|.+++++++
T Consensus 671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~-Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv 749 (1887)
T 2uv8_A 671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAK-VVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 749 (1887)
T ss_dssp BCCTTCEEEEESCCSSSHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCE-EEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 3467899999999999 999999999999998 99985443321100 0 0 1345788999999999988766
Q ss_pred c-------------CcCEEEEcccCCCCc-h----h--hhchhhhhHhhhHHHHHHHHHHHHcC------CCeEEEEecc
Q 011770 77 R-------------GVDCVFHVASYGMSG-K----E--MLQFGRVDEVNINGTCHVIEACLEFG------IQRLVYVSTY 130 (478)
Q Consensus 77 ~-------------~~D~ViHlAa~~~~~-~----~--~~~~~~~~~vNv~gt~nll~aa~~~~------v~r~V~~SS~ 130 (478)
+ ++|++||+||+.... . . ..+....+++|+.|+.++.++++... -.++|++||.
T Consensus 750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ 829 (1887)
T 2uv8_A 750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPN 829 (1887)
T ss_dssp HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSC
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcCh
Confidence 3 489999999975433 1 1 34467889999999999999885432 1489999998
Q ss_pred ceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHH-HHHHcCCCCccCCCCcceEEEEeCCceeC
Q 011770 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL-VLKSNGRPFKKNNRKCLYTCAVRPAAIYG 197 (478)
Q Consensus 131 ~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~-v~~~~~~~~~~~~~~gl~~~ilRp~~vyG 197 (478)
....++ ...|+.||...+.+ ...... .+. .. ++++++.|+.|.|
T Consensus 830 ag~~gg------------------~~aYaASKAAL~~Lttr~lA~-ela---~~-IrVNaV~PG~V~t 874 (1887)
T 2uv8_A 830 HGTFGG------------------DGMYSESKLSLETLFNRWHSE-SWA---NQ-LTVCGAIIGWTRG 874 (1887)
T ss_dssp TTCSSC------------------BTTHHHHHHHGGGHHHHHHHS-SCT---TT-EEEEEEEECCEEC
T ss_pred HhccCC------------------CchHHHHHHHHHHHHHHHHHH-HhC---CC-eEEEEEEeccccc
Confidence 654320 15699999999998 443332 221 23 9999999999985
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-12 Score=134.77 Aligned_cols=229 Identities=18% Similarity=0.190 Sum_probs=148.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC--------Cccc---ccccCCCeEEEEecCCCHHHHHHH-
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN--------SPWS---HLLINHGVHCIQGDVVSKIDVEKA- 75 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~--------~~~~---~~~~~~~v~~v~gDl~d~~~l~~~- 75 (478)
++++|+++||||++-||++++++|.++|++ |++.|++.. .... ......+.+. .+|+.|.++++++
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~-Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~-~~d~~d~~~~~~~v 82 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAK-VVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA-VADYNNVLDGDKIV 82 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECC-----------CHHHHHHHHHHHTTCEE-EEECCCTTCHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeCCccccccccchHHHHHHHHHHHhcCCeE-EEEcCCHHHHHHHH
Confidence 467899999999999999999999999999 999987541 1100 0111112222 3577765433332
Q ss_pred ------hcCcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccC
Q 011770 76 ------ARGVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 76 ------l~~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~ 141 (478)
+.++|++||+||+.... .+..+++..+++|+.|+.++.+++.. .+-.++|++||.+..++...
T Consensus 83 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~~--- 159 (604)
T 2et6_A 83 ETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFG--- 159 (604)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCC---
Confidence 23689999999974322 23456788999999999999888764 34469999999876433211
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeC
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g 221 (478)
...|+.||...+.+.+....+ + ..+|+++.++.|+ + ... +. .....
T Consensus 160 -------------~~~Y~asKaal~~lt~~la~E-l---~~~gIrVn~v~Pg-~----~T~----m~---~~~~~----- 205 (604)
T 2et6_A 160 -------------QANYASAKSALLGFAETLAKE-G---AKYNIKANAIAPL-A----RSR----MT---ESIMP----- 205 (604)
T ss_dssp -------------BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEEC-C----CCH----HH---HTTSC-----
T ss_pred -------------chHHHHHHHHHHHHHHHHHHH-h---CccCeEEEEEccC-C----cCc----cc---cccCC-----
Confidence 257999999999888765432 1 1478999999995 2 111 11 11000
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC------------------CCCCHHHHHHHHHH
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG------------------FPINTFEFIGPLLK 283 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g------------------~~~s~~e~~~~i~~ 283 (478)
.........+|++.+++.++.. .....|+.+.+.+| ...+..++.+...+
T Consensus 206 --~~~~~~~~pe~vA~~v~~L~s~----------~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 273 (604)
T 2et6_A 206 --PPMLEKLGPEKVAPLVLYLSSA----------ENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSE 273 (604)
T ss_dssp --HHHHTTCSHHHHHHHHHHHTSS----------SCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHH
T ss_pred --hhhhccCCHHHHHHHHHHHhCC----------cccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHH
Confidence 0112235789999999887752 12356777777654 23566777777766
Q ss_pred hcCC
Q 011770 284 TLDY 287 (478)
Q Consensus 284 ~lg~ 287 (478)
....
T Consensus 274 ~~~~ 277 (604)
T 2et6_A 274 ILDY 277 (604)
T ss_dssp HTCC
T ss_pred hhch
Confidence 5543
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=141.40 Aligned_cols=198 Identities=19% Similarity=0.168 Sum_probs=142.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHH-HcCCceEEEEecCCCCccc-----cc--ccCCCeEEEEecCCCHHHHHHHhcC---
Q 011770 10 EGKTFLVTGGLGHVGSALCLELV-RRGAYQVRAFDLRTNSPWS-----HL--LINHGVHCIQGDVVSKIDVEKAARG--- 78 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~-~~G~~~V~~l~r~~~~~~~-----~~--~~~~~v~~v~gDl~d~~~l~~~l~~--- 78 (478)
++++++||||+|.||.++++.|. ++|.++|++++|+...... .. .....+.++.+|++|.++++++++.
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~ 608 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD 608 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 46899999999999999999999 7898658888887432110 01 1234588999999999999998863
Q ss_pred ---cCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 79 ---VDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 79 ---~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
+|.|||+|+..... .+..+.+..+++|+.|+.|+.+++.. .. +||++||.+.+.|...
T Consensus 609 ~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l-~iV~~SS~ag~~g~~g------------- 673 (795)
T 3slk_A 609 EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DV-ALVLFSSVSGVLGSGG------------- 673 (795)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TS-EEEEEEETHHHHTCSS-------------
T ss_pred hCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CC-EEEEEccHHhcCCCCC-------------
Confidence 69999999975332 23446678899999999999999843 33 8999999887554321
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-HHHHHHHcCCCCeeeCCCCccccce
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-RIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...|+.+|...+.+..+.. ..|++++.+-|+.+-.++...... .....+.+.. ...+
T Consensus 674 ---~~~YaAaka~~~alA~~~~--------~~Gi~v~sI~pG~v~t~g~~~~~~~~~~~~~~~~g-----------~~~l 731 (795)
T 3slk_A 674 ---QGNYAAANSFLDALAQQRQ--------SRGLPTRSLAWGPWAEHGMASTLREAEQDRLARSG-----------LLPI 731 (795)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH--------HTTCCEEEEEECCCSCCCHHHHHHHHHHHHHHHTT-----------BCCC
T ss_pred ---CHHHHHHHHHHHHHHHHHH--------HcCCeEEEEECCeECcchhhccccHHHHHHHHhcC-----------CCCC
Confidence 2579999999998887765 479999999999887654321111 1111222111 1234
Q ss_pred eHHHHHHHHHHHHh
Q 011770 231 YVDNLVLALILASM 244 (478)
Q Consensus 231 ~V~Dva~a~~~a~~ 244 (478)
..++....+..++.
T Consensus 732 ~~~e~~~~~~~~l~ 745 (795)
T 3slk_A 732 STEEGLSQFDAACG 745 (795)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 56788888877775
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9e-12 Score=124.36 Aligned_cols=171 Identities=16% Similarity=0.031 Sum_probs=121.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHH-cCCceEEEEecCCCCccc--------------cc--ccCCCeEEEEecCCCHHH
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVR-RGAYQVRAFDLRTNSPWS--------------HL--LINHGVHCIQGDVVSKID 71 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~~l~r~~~~~~~--------------~~--~~~~~v~~v~gDl~d~~~ 71 (478)
..+|++|||||++-||.++++.|.+ .|++ |++++++...... .. .....+..+.+|++|.++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~-Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGAD-TLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI 123 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCE-EEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCE-EEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 3478999999999999999999999 9999 9999886553210 01 123357789999999998
Q ss_pred HHHHhc-------CcCEEEEcccCCC--------------------------------------CchhhhchhhhhHhhh
Q 011770 72 VEKAAR-------GVDCVFHVASYGM--------------------------------------SGKEMLQFGRVDEVNI 106 (478)
Q Consensus 72 l~~~l~-------~~D~ViHlAa~~~--------------------------------------~~~~~~~~~~~~~vNv 106 (478)
++++++ ++|++||+||... ...+..+++..+++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 887765 5899999998630 1113345667778888
Q ss_pred HHHH-HHHHHHHHcCC----CeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCC
Q 011770 107 NGTC-HVIEACLEFGI----QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNN 181 (478)
Q Consensus 107 ~gt~-nll~aa~~~~v----~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~ 181 (478)
.++. .+++++..... .++|.+||.....+. |.. ....|+.||...+.+.+..+.+ + +
T Consensus 204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~----------p~~----~~~aY~AaKaal~~ltrsLA~E-l---a 265 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITH----------DIY----WNGSIGAAKKDLDQKVLAIRES-L---A 265 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGT----------TTT----TTSHHHHHHHHHHHHHHHHHHH-H---H
T ss_pred hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcC----------CCc----cchHHHHHHHHHHHHHHHHHHH-h---C
Confidence 8776 56666554321 379999997642111 100 0157999999999988765432 1 1
Q ss_pred CC-cceEEEEeCCceeCC
Q 011770 182 RK-CLYTCAVRPAAIYGP 198 (478)
Q Consensus 182 ~~-gl~~~ilRp~~vyGp 198 (478)
.. |+++.++-|+.|-.+
T Consensus 266 ~~~GIRVNaVaPG~i~T~ 283 (405)
T 3zu3_A 266 AHGGGDARVSVLKAVVSQ 283 (405)
T ss_dssp TTTSCEEEEEECCCCCCH
T ss_pred cccCeEEEEEEeCCCcCc
Confidence 46 899999999998765
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=123.58 Aligned_cols=172 Identities=16% Similarity=0.026 Sum_probs=120.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHH-cCCceEEEEecCCCCccc--------------c--cccCCCeEEEEecCCCHHHH
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVR-RGAYQVRAFDLRTNSPWS--------------H--LLINHGVHCIQGDVVSKIDV 72 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~~l~r~~~~~~~--------------~--~~~~~~v~~v~gDl~d~~~l 72 (478)
.+|++|||||++-||.++++.|.+ .|++ |++++|+...... . ......+..+.+|++|.+++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~-Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGAD-TLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCE-EEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 478999999999999999999999 9999 9999887653211 0 11123577899999999887
Q ss_pred HHHh--------cCcCEEEEcccCC-------------C---C----------------------chhhhchhhhhHhhh
Q 011770 73 EKAA--------RGVDCVFHVASYG-------------M---S----------------------GKEMLQFGRVDEVNI 106 (478)
Q Consensus 73 ~~~l--------~~~D~ViHlAa~~-------------~---~----------------------~~~~~~~~~~~~vNv 106 (478)
++++ .++|++||+||.. . . ..+..+++..+++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 7655 3579999999862 0 0 112334555666776
Q ss_pred HHHH-HHHHHHHHcCC----CeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCC
Q 011770 107 NGTC-HVIEACLEFGI----QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNN 181 (478)
Q Consensus 107 ~gt~-nll~aa~~~~v----~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~ 181 (478)
.++. .+++++..... .++|.+||.+...+.+. .....|+.||...+.+.+..+.+ + +
T Consensus 219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~--------------~~~~aY~ASKaAl~~lTrsLA~E-l---a 280 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEITWPI--------------YWHGALGKAKVDLDRTAQRLNAR-L---A 280 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHH--------------HTSHHHHHHHHHHHHHHHHHHHH-H---H
T ss_pred hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCC--------------ccchHHHHHHHHHHHHHHHHHHH-h---C
Confidence 6664 66666654332 37999999765211110 00157999999999988765431 1 2
Q ss_pred CCcceEEEEeCCceeCCCC
Q 011770 182 RKCLYTCAVRPAAIYGPGE 200 (478)
Q Consensus 182 ~~gl~~~ilRp~~vyGp~~ 200 (478)
..|+++.++.|+.|-.+..
T Consensus 281 ~~GIRVNaVaPG~i~T~~~ 299 (422)
T 3s8m_A 281 KHGGGANVAVLKSVVTQAS 299 (422)
T ss_dssp TTTCEEEEEEECCCCCTTG
T ss_pred ccCEEEEEEEcCCCcChhh
Confidence 4799999999999987754
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=103.08 Aligned_cols=98 Identities=21% Similarity=0.183 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
++++|+|+|+ |++|+++++.|.+.| ++ |++++|++... ......+++++.+|+++.+++.++++++|+|||+++.
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~-v~~~~r~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~ 79 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYS-VTVADHDLAAL--AVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPF 79 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEE-EEEEESCHHHH--HHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCG
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCce-EEEEeCCHHHH--HHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCc
Confidence 4579999999 999999999999999 77 99999875421 1122467889999999999999999999999999852
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
. .+.+++++|.+.|++++...++
T Consensus 80 ~------------------~~~~~~~~~~~~g~~~~~~~~~ 102 (118)
T 3ic5_A 80 F------------------LTPIIAKAAKAAGAHYFDLTED 102 (118)
T ss_dssp G------------------GHHHHHHHHHHTTCEEECCCSC
T ss_pred h------------------hhHHHHHHHHHhCCCEEEecCc
Confidence 1 1357899999999866554443
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.2e-11 Score=119.24 Aligned_cols=171 Identities=13% Similarity=0.004 Sum_probs=118.5
Q ss_pred CCCCeEEEEcCCChhHHH--HHHHHHHcCCceEEEEecCCCCccc-----------c-----cccCCCeEEEEecCCCHH
Q 011770 9 IEGKTFLVTGGLGHVGSA--LCLELVRRGAYQVRAFDLRTNSPWS-----------H-----LLINHGVHCIQGDVVSKI 70 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~--Lv~~L~~~G~~~V~~l~r~~~~~~~-----------~-----~~~~~~v~~v~gDl~d~~ 70 (478)
..+|++|||||++-||.+ +++.|.+.|++ |++++|+...... . ......+..+.+|++|.+
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAH-TIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCE-EEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCE-EEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 457899999999999999 99999999998 9999986543210 0 112345788999999999
Q ss_pred HHHHHhc-------CcCEEEEcccCC-------------CC-------------------------chhhhchhhhhHhh
Q 011770 71 DVEKAAR-------GVDCVFHVASYG-------------MS-------------------------GKEMLQFGRVDEVN 105 (478)
Q Consensus 71 ~l~~~l~-------~~D~ViHlAa~~-------------~~-------------------------~~~~~~~~~~~~vN 105 (478)
+++++++ ++|++||+||.. .. ..+..+.+...++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 8887765 579999999863 00 01223445556666
Q ss_pred hHHHH-HHHHHHHHcCC----CeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccC
Q 011770 106 INGTC-HVIEACLEFGI----QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180 (478)
Q Consensus 106 v~gt~-nll~aa~~~~v----~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~ 180 (478)
..+.. .+++++...+. .++|.+||.....+ .|.. ....|+.||...+.+.+..+.+ +
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~----------~p~~----~~~aY~ASKaAL~~ltrsLA~E-L--- 278 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT----------YKIY----REGTIGIAKKDLEDKAKLINEK-L--- 278 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG----------TTTT----TTSHHHHHHHHHHHHHHHHHHH-H---
T ss_pred hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC----------CCcc----ccHHHHHHHHHHHHHHHHHHHH-h---
Confidence 66555 55666655432 37999998754211 0110 1157999999999988766532 1
Q ss_pred CC-CcceEEEEeCCceeCC
Q 011770 181 NR-KCLYTCAVRPAAIYGP 198 (478)
Q Consensus 181 ~~-~gl~~~ilRp~~vyGp 198 (478)
+. .|+++.++-|+.|-.+
T Consensus 279 a~~~GIrVN~V~PG~v~T~ 297 (418)
T 4eue_A 279 NRVIGGRAFVSVNKALVTK 297 (418)
T ss_dssp HHHHSCEEEEEECCCCCCH
T ss_pred CCccCeEEEEEECCcCcCh
Confidence 14 5899999999999765
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=99.15 E-value=7.9e-11 Score=116.12 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCcccccccCCCeE-EEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWSHLLINHGVH-CIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~~~~~~~~v~-~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
++|||+||||+||+|++++..|.++| ++ |+++|+.+.............. -+.+ +.+.+++.++++++|+|||+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~e-v~l~Di~~~~~~~~dL~~~~~~~~v~~-~~~t~d~~~al~gaDvVi~~a 84 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSV-LHLYDVVNAPGVTADISHMDTGAVVRG-FLGQQQLEAALTGMDLIIVPA 84 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEE-EEEEESSSHHHHHHHHHTSCSSCEEEE-EESHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCE-EEEEeCCCcHhHHHHhhcccccceEEE-EeCCCCHHHHcCCCCEEEEcC
Confidence 45799999999999999999999988 66 9999976541100001111110 1122 334567888999999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
+..... .....+....|+.++.++++++.+.+.+.+|+++|-
T Consensus 85 g~~~~~--g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 85 GVPRKP--GMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp CCCCCS--SCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 854322 123456789999999999999999998888888874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-10 Score=136.28 Aligned_cols=164 Identities=22% Similarity=0.163 Sum_probs=116.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----cc--ccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HL--LINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~~--~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++++||||+|-||.++++.|.++|++.|++++|+...... .. .....+.++.+|++|.++++++++
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 568999999999999999999999999757777777543210 00 113457788999999999887764
Q ss_pred -CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
.+|+|||+|+..... .+..+.+..+++|+.|+.++.+++... ...+||++||.+...+...
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g------------ 2030 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAG------------ 2030 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCTT------------
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCCC------------
Confidence 579999999964322 234567788999999999999888764 2369999999876433211
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeC
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYG 197 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyG 197 (478)
...|+.+|...+.+.+... ..|++...+-.+.+-+
T Consensus 2031 ----~~~Y~aaKaal~~l~~~rr--------~~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2031 ----QANYGFANSAMERICEKRR--------HDGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH--------HTTSCCCEEEECCBCT
T ss_pred ----cHHHHHHHHHHHHHHHHHH--------HCCCcEEEEEccCcCC
Confidence 2579999999999997543 3577777777765533
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.1e-11 Score=117.18 Aligned_cols=173 Identities=10% Similarity=0.062 Sum_probs=107.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC------ceEEEEecC----CCCccc--ccccCCCeEEEEecCCCHHHHHHHhc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA------YQVRAFDLR----TNSPWS--HLLINHGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~------~~V~~l~r~----~~~~~~--~~~~~~~v~~v~gDl~d~~~l~~~l~ 77 (478)
+++||+||||+||||++++..|+..|. .+|+++|+. ...... ....+....+ ..|+...+++.++++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~ 82 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK 82 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence 346899999999999999999999885 139999876 210000 0011111111 246665566788999
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-CC-eEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-IQ-RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-v~-r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
++|+|||+|+.... ...+..+....|+.++.++++++.+++ .+ ++|++|...-. -... ..+..+-.|. .
T Consensus 83 ~aD~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~--~t~~--~~~~~~~~p~---~ 153 (329)
T 1b8p_A 83 DADVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANT--NAYI--AMKSAPSLPA---K 153 (329)
T ss_dssp TCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH--HHHH--HHHTCTTSCG---G
T ss_pred CCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHH--HHHH--HHHHcCCCCH---H
Confidence 99999999996432 222455678999999999999999995 66 88888863210 0000 0001111111 1
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
..|+.+++...++.....+ ..|++...++...|+|.+
T Consensus 154 ~v~g~t~Ld~~r~~~~la~-------~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 154 NFTAMLRLDHNRALSQIAA-------KTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp GEEECCHHHHHHHHHHHHH-------HHTCCGGGEESCEEEBCS
T ss_pred HEEEeecHHHHHHHHHHHH-------HhCcCHHHceEEEEEecc
Confidence 3588888776665544332 234444456666678854
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-10 Score=113.88 Aligned_cols=112 Identities=13% Similarity=0.037 Sum_probs=78.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEec--CCCCcc------ccc--ccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDL--RTNSPW------SHL--LINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r--~~~~~~------~~~--~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
|||+||||+||+|++++..|+.+|. .++..+|+ ...... ... .....+++..+| +++.++++++|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~gaD 76 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRIIDESD 76 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTCS
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHhCCCC
Confidence 4899999999999999999998875 23788887 321000 000 000122222221 23566789999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
+|||+|+..... ........+.|+.+++++++++++++ +++|+++|-
T Consensus 77 ~Vi~~Ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SN 123 (313)
T 1hye_A 77 VVIITSGVPRKE--GMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITN 123 (313)
T ss_dssp EEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSS
T ss_pred EEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecC
Confidence 999999964322 22345678999999999999999999 888888874
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-10 Score=112.71 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=65.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--c-cCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--L-INHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~-~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
.+++++++||||+|.+|++++..|.+.|++ |++++|+........ . ...++.++.+|++|.+++.++++++|+|||
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn 194 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT 194 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence 356789999999999999999999999998 999998754211100 0 112467788999999999999999999999
Q ss_pred cccCCC
Q 011770 85 VASYGM 90 (478)
Q Consensus 85 lAa~~~ 90 (478)
+|+.+.
T Consensus 195 ~ag~g~ 200 (287)
T 1lu9_A 195 AGAIGL 200 (287)
T ss_dssp CCCTTC
T ss_pred CCCccc
Confidence 998643
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7e-09 Score=88.87 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
+++++|+|+|+ |.+|+.+++.|.+.|++ |+++++++... ......+...+.+|.+|.+.+.++ ++++|+||++++
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~-v~~~d~~~~~~--~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 79 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHE-VLAVDINEEKV--NAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 79 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCC-CEEEESCHHHH--HTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCC
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCHHHH--HHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 45678999997 99999999999999998 99999864321 112233567788999998888776 778999999986
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
.. .+.|. .+.+.+++.+++++|..++...
T Consensus 80 ~~------------~~~~~----~~~~~~~~~~~~~ii~~~~~~~ 108 (144)
T 2hmt_A 80 AN------------IQAST----LTTLLLKELDIPNIWVKAQNYY 108 (144)
T ss_dssp SC------------HHHHH----HHHHHHHHTTCSEEEEECCSHH
T ss_pred Cc------------hHHHH----HHHHHHHHcCCCeEEEEeCCHH
Confidence 31 12232 3667788888887777666543
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-08 Score=120.99 Aligned_cols=170 Identities=17% Similarity=0.156 Sum_probs=115.1
Q ss_pred CCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEEecCCCCc-----cc--ccc--cCCCeEEEEecCCCHHHHHHHhc
Q 011770 8 GIEGKTFLVTGGLGH-VGSALCLELVRRGAYQVRAFDLRTNSP-----WS--HLL--INHGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGf-IG~~Lv~~L~~~G~~~V~~l~r~~~~~-----~~--~~~--~~~~v~~v~gDl~d~~~l~~~l~ 77 (478)
.+++|+++||||++- ||.++++.|++.|++ |++.+|+.... .. ... ....+..+.+|++|.++++++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~-Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~ 2211 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGAT-VIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVE 2211 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCE-EEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCE-EEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHH
Confidence 367899999999999 999999999999999 99999876531 00 001 12346789999999999887642
Q ss_pred -----------CcCEEEEcccCC----CC-----chhhhchhhh----hHhhhHHHHHHHHHHHHc----CCC---eEEE
Q 011770 78 -----------GVDCVFHVASYG----MS-----GKEMLQFGRV----DEVNINGTCHVIEACLEF----GIQ---RLVY 126 (478)
Q Consensus 78 -----------~~D~ViHlAa~~----~~-----~~~~~~~~~~----~~vNv~gt~nll~aa~~~----~v~---r~V~ 126 (478)
++|++||+||.. .. .....+.+.. +++|+.++..++.++... +.. .+|.
T Consensus 2212 ~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~ 2291 (3089)
T 3zen_D 2212 WVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVL 2291 (3089)
T ss_dssp HHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence 479999999961 00 0122223333 789999998888877653 221 1222
Q ss_pred EeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCC-CCccCCCCcceEEEEeCCceeCCC
Q 011770 127 VSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGR-PFKKNNRKCLYTCAVRPAAIYGPG 199 (478)
Q Consensus 127 ~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~-~~~~~~~~gl~~~ilRp~~vyGp~ 199 (478)
.+|... +. .+. ...|+.||...+.+.+....+ .+ ..+++++.+.|+.|-+.+
T Consensus 2292 ~~ss~~--g~------------~g~---~~aYsASKaAl~~LtrslA~E~~~----a~~IrVn~v~PG~v~tT~ 2344 (3089)
T 3zen_D 2292 PGSPNR--GM------------FGG---DGAYGEAKSALDALENRWSAEKSW----AERVSLAHALIGWTKGTG 2344 (3089)
T ss_dssp EECSST--TS------------CSS---CSSHHHHGGGHHHHHHHHHHCSTT----TTTEEEEEEECCCEECST
T ss_pred ECCccc--cc------------CCC---chHHHHHHHHHHHHHHHHHhcccc----CCCeEEEEEeecccCCCc
Confidence 222110 10 010 146999999999998877653 12 246999999999998543
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.86 E-value=6.8e-10 Score=108.32 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=77.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEec--CCCCccc---ccc----cCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDL--RTNSPWS---HLL----INHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r--~~~~~~~---~~~----~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
|||+||||+||+|++++..|+..|.. ++..+|+ ....... ... ...++++.. | + .++++++|+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDv 73 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGSDV 73 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCCCE
Confidence 48999999999999999999988762 3888887 3221000 000 012223222 1 2 446889999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
|||+|+..... .....+....|+.+++++++++.+++.+.+|+++|-
T Consensus 74 Vi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 74 VVITAGIPRQP--GQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp EEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 99999964322 123456789999999999999999998888888764
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-09 Score=107.24 Aligned_cols=111 Identities=17% Similarity=0.087 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
++++|+||| +|++|+++++.|.+.|++ |++.+|+............+++.+.+|++|.+++.++++++|+|||+|+..
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~-V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIK-VTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCE-EEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCE-EEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 467999998 899999999999999988 999998754221111112347788999999999999999999999999864
Q ss_pred CCchhh---hch-hhhhH--hhhHHHHHHHHHHHHcCCC
Q 011770 90 MSGKEM---LQF-GRVDE--VNINGTCHVIEACLEFGIQ 122 (478)
Q Consensus 90 ~~~~~~---~~~-~~~~~--vNv~gt~nll~aa~~~~v~ 122 (478)
....-. ... ..+.. .....+.+++++|++.|++
T Consensus 80 ~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~ 118 (450)
T 1ff9_A 80 FHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT 118 (450)
T ss_dssp CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred cchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence 322100 000 01111 1135788999999999973
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.1e-08 Score=84.91 Aligned_cols=100 Identities=22% Similarity=0.249 Sum_probs=71.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
.+|++|+|+|+ |.+|+++++.|.++|++ |+++|+++... ......++.++.+|.+|++.+.++ ++++|+||.+.+
T Consensus 4 ~~~~~v~I~G~-G~iG~~la~~L~~~g~~-V~~id~~~~~~--~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 4 NGRYEYIVIGS-EAAGVGLVRELTAAGKK-VLAVDKSKEKI--ELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCC-EEEEESCHHHH--HHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCe-EEEEECCHHHH--HHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 34678999997 99999999999999999 99999865421 122335688999999999998876 468999998764
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
- .+.|. .+...+++.+..++|-..+
T Consensus 80 ~-------------~~~n~----~~~~~a~~~~~~~iia~~~ 104 (141)
T 3llv_A 80 D-------------DEFNL----KILKALRSVSDVYAIVRVS 104 (141)
T ss_dssp C-------------HHHHH----HHHHHHHHHCCCCEEEEES
T ss_pred C-------------HHHHH----HHHHHHHHhCCceEEEEEc
Confidence 1 12333 3556667777555554433
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.7e-07 Score=78.41 Aligned_cols=99 Identities=22% Similarity=0.301 Sum_probs=71.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcccCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVASYG 89 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa~~ 89 (478)
+|+|+|+|+ |++|+.+++.|.+.|++ |+++++++... .......++.++.+|.++.+.+.++ ++++|+||++...
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~-v~~~d~~~~~~-~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~- 79 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHD-IVLIDIDKDIC-KKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK- 79 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHH-HHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEECCHHHH-HHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCC-
Confidence 468999986 99999999999999998 99999864321 1111123677889999998888765 6789999999741
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
. +.|. .+.+.+++.+.+++|..++
T Consensus 80 ----~--------~~~~----~~~~~~~~~~~~~ii~~~~ 103 (140)
T 1lss_A 80 ----E--------EVNL----MSSLLAKSYGINKTIARIS 103 (140)
T ss_dssp ----H--------HHHH----HHHHHHHHTTCCCEEEECS
T ss_pred ----c--------hHHH----HHHHHHHHcCCCEEEEEec
Confidence 0 1232 4566777788777775443
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.7e-08 Score=99.55 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.+++++|+|+|+ |++|+.+++.|.+. |++ |++.+|+.......... .+++.+.+|+.|.+++.++++++|+|||++
T Consensus 20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~-V~v~~R~~~ka~~la~~-~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t 96 (467)
T 2axq_A 20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDIN-VTVACRTLANAQALAKP-SGSKAISLDVTDDSALDKVLADNDVVISLI 96 (467)
T ss_dssp ---CEEEEEECC-STTHHHHHHHHHTSTTEE-EEEEESSHHHHHHHHGG-GTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred CCCCCEEEEECC-hHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHh-cCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence 466789999997 99999999999998 676 99999875422111111 357788899999999999999999999999
Q ss_pred cCCCCchhh----hchhhhhHhhh--HHHHHHHHHHHHcCC
Q 011770 87 SYGMSGKEM----LQFGRVDEVNI--NGTCHVIEACLEFGI 121 (478)
Q Consensus 87 a~~~~~~~~----~~~~~~~~vNv--~gt~nll~aa~~~~v 121 (478)
+......-. ..-..+++.|. ..+.+++++|++.|+
T Consensus 97 p~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv 137 (467)
T 2axq_A 97 PYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI 137 (467)
T ss_dssp CGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred chhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence 864221100 00012223332 456788888888886
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-07 Score=94.47 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
-++|||+|.|| |++|+.+++.|.+ .++ |.+.|++... .....+.+..++.|+.|.+++.++++++|+||+++++
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~-~~~-v~~~~~~~~~---~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~ 87 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKD-EFD-VYIGDVNNEN---LEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPG 87 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTT-TSE-EEEEESCHHH---HHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CCccEEEEECC-CHHHHHHHHHHhc-CCC-eEEEEcCHHH---HHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCC
Confidence 34578999998 9999999998865 577 9999886542 1223456778899999999999999999999999863
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEe
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~S 128 (478)
. + ...++++|.++|+ ++|=+|
T Consensus 88 ~------------~------~~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 88 F------------L------GFKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp G------------G------HHHHHHHHHHHTC-EEEECC
T ss_pred c------------c------cchHHHHHHhcCc-ceEeee
Confidence 1 0 1258999999997 666544
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.49 E-value=6.4e-07 Score=77.84 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--ccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
.+++|+|+|+ |.+|+++++.|.+.|++ |++++++++.... ......+++++.||.+|++.+.++ ++++|+||-+.
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~-V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCC-EEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence 3568999995 99999999999999999 9999986421100 111245789999999999999887 88999999886
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
.
T Consensus 80 ~ 80 (153)
T 1id1_A 80 D 80 (153)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=75.40 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=73.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc-CCCeEEEEecCCCHHHHHHH-hcCcCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI-NHGVHCIQGDVVSKIDVEKA-ARGVDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~-~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHl 85 (478)
...+++|+|+|+ |.+|+.+++.|.+.|++ |+++++++... .... ..+...+.+|..+.+.+.++ ++++|+||.+
T Consensus 16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~~-V~vid~~~~~~--~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~ 91 (155)
T 2g1u_A 16 KQKSKYIVIFGC-GRLGSLIANLASSSGHS-VVVVDKNEYAF--HRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF 91 (155)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCGGGG--GGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCCe-EEEEECCHHHH--HHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence 456789999995 99999999999999998 99999875422 1122 34677888999998887765 7789999998
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHH-cCCCeEEEEecc
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLE-FGIQRLVYVSTY 130 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~-~~v~r~V~~SS~ 130 (478)
.+. . ..| ..+.+.+++ .+..++|...+.
T Consensus 92 ~~~-----~--------~~~----~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 92 TND-----D--------STN----FFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp SSC-----H--------HHH----HHHHHHHHHTSCCSEEEEECSS
T ss_pred eCC-----c--------HHH----HHHHHHHHHHCCCCeEEEEECC
Confidence 752 0 112 235566666 566566665543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.4e-08 Score=96.96 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=70.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC---ceEEEEecCCCCccccc--cc---CCCeEEEEecCCCHHHHHHHhcC--cC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA---YQVRAFDLRTNSPWSHL--LI---NHGVHCIQGDVVSKIDVEKAARG--VD 80 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~---~~V~~l~r~~~~~~~~~--~~---~~~v~~v~gDl~d~~~l~~~l~~--~D 80 (478)
|++|+|+|| |++|+.+++.|.+.|. + |++.+|+........ .. ..+++.+.+|++|.+++++++++ +|
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~-V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~D 78 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSH-ITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQ 78 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCE-EEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceE-EEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCC
Confidence 468999998 9999999999999984 5 999988754321111 11 13588999999999999999987 89
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ 122 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~ 122 (478)
+|||+|+... ...++++|.+.|+.
T Consensus 79 vVin~ag~~~------------------~~~v~~a~l~~g~~ 102 (405)
T 4ina_A 79 IVLNIALPYQ------------------DLTIMEACLRTGVP 102 (405)
T ss_dssp EEEECSCGGG------------------HHHHHHHHHHHTCC
T ss_pred EEEECCCccc------------------ChHHHHHHHHhCCC
Confidence 9999997310 13578899999974
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-07 Score=89.70 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=76.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCcccccccCCCeEEEEecCCC---HHHHHHHhcCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS---KIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d---~~~l~~~l~~~D~ViHlA 86 (478)
|||.|+||+|++|+.++..|++.| .+ |+++|+.+.........+... .+++.. .++++++++++|+||++|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~e-v~L~Di~~~~~~a~dL~~~~~---~~~l~~~~~t~d~~~a~~~aDvVvi~a 76 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSR-LTLYDIAHTPGVAADLSHIET---RATVKGYLGPEQLPDCLKGCDVVVIPA 76 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSE-EEEEESSSHHHHHHHHTTSSS---SCEEEEEESGGGHHHHHTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcE-EEEEeCCccHHHHHHHhccCc---CceEEEecCCCCHHHHhCCCCEEEECC
Confidence 489999999999999999999888 56 999998762110001111100 012221 235777899999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEe
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVS 128 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~S 128 (478)
+..... ..+..+....|+..+..+.+.+.+++.+ ++|++|
T Consensus 77 g~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s 117 (314)
T 1mld_A 77 GVPRKP--GMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (314)
T ss_dssp SCCCCT--TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CcCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 864322 2234567899999999999999998754 566653
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-07 Score=93.69 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=77.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-ce-----EEEEecCCCCc----ccccccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-YQ-----VRAFDLRTNSP----WSHLLINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~~-----V~~l~r~~~~~----~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
.+||+||||+|+||++++..|...|. .+ ++++|+.+... ......+....+. .++...+...+.++++|
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~-~~~~~~~~~~~~~~daD 81 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL-KDVIATDKEEIAFKDLD 81 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE-EEEEEESCHHHHTTTCS
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhccc-CCEEEcCCcHHHhCCCC
Confidence 36899999999999999999988765 22 88888753200 0000111110011 12222234566789999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC--eEEEEec
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ--RLVYVST 129 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~--r~V~~SS 129 (478)
+|||+||.... .-.++.+..+.|+..++++++++.+++.+ +++.+|.
T Consensus 82 vVvitAg~prk--pG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 82 VAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp EEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 99999985422 22346778899999999999999999875 4666554
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=80.69 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=55.2
Q ss_pred CCCeEEEEcC----------------CChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHH
Q 011770 10 EGKTFLVTGG----------------LGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE 73 (478)
Q Consensus 10 ~~~~ILVTGa----------------tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~ 73 (478)
++|+|||||| +|.+|.++++++.++|++ |+.+++..... ...+.++..+ |+...+++.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~-V~lv~~~~~~~---~~~~~~~~~~--~v~s~~em~ 75 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYE-VCLITTKRALK---PEPHPNLSIR--EITNTKDLL 75 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCE-EEEEECTTSCC---CCCCTTEEEE--ECCSHHHHH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCE-EEEEeCCcccc---ccCCCCeEEE--EHhHHHHHH
Confidence 4789999999 999999999999999999 99998865421 1113355544 555654443
Q ss_pred ----HHhcCcCEEEEcccCCC
Q 011770 74 ----KAARGVDCVFHVASYGM 90 (478)
Q Consensus 74 ----~~l~~~D~ViHlAa~~~ 90 (478)
+.+.++|++||+||...
T Consensus 76 ~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 76 IEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp HHHHHHGGGCSEEEECSBCCS
T ss_pred HHHHHhcCCCCEEEEcCcccc
Confidence 34457999999999754
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-06 Score=78.62 Aligned_cols=75 Identities=23% Similarity=0.312 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcC----------------CChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH
Q 011770 8 GIEGKTFLVTGG----------------LGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71 (478)
Q Consensus 8 ~~~~~~ILVTGa----------------tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~ 71 (478)
.+.+|+|||||| ||.+|.+++++|.++|++ |+++++..... .+.+++ ..|+.+.++
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~-V~l~~~~~~l~-----~~~g~~--~~dv~~~~~ 76 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGAN-VTLVSGPVSLP-----TPPFVK--RVDVMTALE 76 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCE-EEEEECSCCCC-----CCTTEE--EEECCSHHH
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCE-EEEEECCcccc-----cCCCCe--EEccCcHHH
Confidence 467899999999 799999999999999999 99987754311 123444 568888766
Q ss_pred HHHH----hcCcCEEEEcccCCC
Q 011770 72 VEKA----ARGVDCVFHVASYGM 90 (478)
Q Consensus 72 l~~~----l~~~D~ViHlAa~~~ 90 (478)
+.+. +.++|++||+||...
T Consensus 77 ~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 77 MEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp HHHHHHHHGGGCSEEEECCBCCS
T ss_pred HHHHHHHhcCCCCEEEECCcccC
Confidence 5544 347999999999753
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.2e-07 Score=88.40 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
|+++||.|+|++|+||+.++..|+..|. ++|+++|+........ ...+.. +-..++.-..+..++++++|+||.+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--~~~~~i~~t~d~~~al~dADvVvit 83 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--FEGLNLTFTSDIKEALTDAKYIVSS 83 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--CTTCCCEEESCHHHHHTTEEEEEEC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--CCCCceEEcCCHHHHhCCCCEEEEc
Confidence 4467999999999999999999999884 2399999854311000 000000 0001111112456778999999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r 123 (478)
||... ..-.+..+..+.|+...+.+.+.+.+++.+-
T Consensus 84 aG~p~--kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a 119 (343)
T 3fi9_A 84 GGAPR--KEGMTREDLLKGNAEIAAQLGKDIKSYCPDC 119 (343)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 98532 2222456678899999999999999988654
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-06 Score=84.22 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHH-cCCceEE-EEecCCCCc-ccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVR-RGAYQVR-AFDLRTNSP-WSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~-~l~r~~~~~-~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+++||.|+|++|.+|+.+++.+.+ .|++ ++ ++|+.+... ........++. ..++...++++++++++|+||+++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~e-lva~~d~~~~~~~g~d~~~~~g~~--~~~v~~~~dl~~~l~~~DvVIDft 80 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQ-LGAALEREGSSLLGSDAGELAGAG--KTGVTVQSSLDAVKDDFDVFIDFT 80 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEE-CCCEECCTTCTTCSCCTTCSSSSS--CCSCCEESCSTTTTTSCSEEEECS
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEecCchhhhhhhHHHHcCCC--cCCceecCCHHHHhcCCCEEEEcC
Confidence 456999999999999999999875 4666 76 445443210 00000000000 011111122344556889999988
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
.
T Consensus 81 ~ 81 (273)
T 1dih_A 81 R 81 (273)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.5e-06 Score=74.10 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH--hcCcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA--ARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~--l~~~D~ViHl 85 (478)
+.+++|+|+| .|.+|+.+++.|.+. |++ |+++|+++... ......+++.+.+|.+|.+.+.++ ++++|+||.+
T Consensus 37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~--~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 37 PGHAQVLILG-MGRIGTGAYDELRARYGKI-SLGIEIREEAA--QQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLA 112 (183)
T ss_dssp CTTCSEEEEC-CSHHHHHHHHHHHHHHCSC-EEEEESCHHHH--HHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhccCCe-EEEEECCHHHH--HHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence 4467899998 599999999999999 999 99999875421 122335678889999999988887 7899999987
Q ss_pred cc
Q 011770 86 AS 87 (478)
Q Consensus 86 Aa 87 (478)
.+
T Consensus 113 ~~ 114 (183)
T 3c85_A 113 MP 114 (183)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.7e-05 Score=73.04 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=58.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
|+|+|+|+ |.+|+++++.|.++|++ |+++++++... .......++.++.+|.+|.+.+.++ ++++|+||-+.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~-v~vid~~~~~~-~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYG-VVIINKDRELC-EEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCC-EEEEESCHHHH-HHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCe-EEEEECCHHHH-HHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 47999996 99999999999999999 99999765421 1111224688999999999999887 789999997653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.8e-05 Score=67.46 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=59.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
+++|+|.|+ |.+|+.+++.|.+.|++ |+++|+++... ......++..+.+|.++++.++++ ++++|+||-+..
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~-v~vid~~~~~~--~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIP-LVVIETSRTRV--DELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCC-EEEEESCHHHH--HHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCC-EEEEECCHHHH--HHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 458999995 99999999999999999 99999875421 122346788999999999988875 568999998764
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.82 E-value=1.3e-05 Score=79.19 Aligned_cols=96 Identities=13% Similarity=0.068 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcC-----CceEEEEecCCCCcccccccC------CCeEEEEecCCCHHHHHHHhc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRG-----AYQVRAFDLRTNSPWSHLLIN------HGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G-----~~~V~~l~r~~~~~~~~~~~~------~~v~~v~gDl~d~~~l~~~l~ 77 (478)
|+|+||+|.||||++|+.|++.|.+++ .-+|+.+.++.+......... ..+.+ .|+ +.+ .+.
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~--~~~-~~~----~~~ 79 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVV--EPT-EAA----VLG 79 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBC--EEC-CHH----HHT
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeee--ccC-CHH----Hhc
Confidence 346799999999999999999999887 423777754332111011011 12222 233 222 355
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
++|+||.|++... +..+.+.+ +.|+ ++|-.|+..
T Consensus 80 ~~DvVf~alg~~~------------------s~~~~~~~-~~G~-~vIDlSa~~ 113 (352)
T 2nqt_A 80 GHDAVFLALPHGH------------------SAVLAQQL-SPET-LIIDCGADF 113 (352)
T ss_dssp TCSEEEECCTTSC------------------CHHHHHHS-CTTS-EEEECSSTT
T ss_pred CCCEEEECCCCcc------------------hHHHHHHH-hCCC-EEEEECCCc
Confidence 8999999987432 22466667 7785 788888875
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=97.79 E-value=7.1e-05 Score=74.10 Aligned_cols=80 Identities=16% Similarity=0.040 Sum_probs=62.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHH-HcCCceEEEEecCCCCcccc----------------cccCCCeEEEEecCCCHHH
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELV-RRGAYQVRAFDLRTNSPWSH----------------LLINHGVHCIQGDVVSKID 71 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~-~~G~~~V~~l~r~~~~~~~~----------------~~~~~~v~~v~gDl~d~~~ 71 (478)
..+|++|||||+.-+|.+.+..|. +.|.. |+++.+........ .........+.+|++|.++
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~-vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGAA-TIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCCE-EEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCCC-EEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 456899999999999999999987 67888 88888765432110 1123457789999999998
Q ss_pred HHHHhc-------CcCEEEEcccCC
Q 011770 72 VEKAAR-------GVDCVFHVASYG 89 (478)
Q Consensus 72 l~~~l~-------~~D~ViHlAa~~ 89 (478)
++++++ ++|++||.+|..
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccc
Confidence 888775 689999999965
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.73 E-value=5.5e-05 Score=70.32 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=68.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcccCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVASYG 89 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa~~ 89 (478)
.++|+|.|+ |.+|+++++.|.+.|+ |+++++++... .... .++.++.+|.+|++.++++ ++++|.||-+.+-
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~--v~vid~~~~~~--~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~- 81 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV--FVLAEDENVRK--KVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLES- 81 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE--EEEESCGGGHH--HHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSC-
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe--EEEEECCHHHH--HHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCC-
Confidence 468999996 9999999999999886 88888765421 1122 6789999999999999887 8899999987631
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEE
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVY 126 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~ 126 (478)
.+.|+ .+...+++.+.+ ++|-
T Consensus 82 ------------d~~n~----~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 82 ------------DSETI----HCILGIRKIDESVRIIA 103 (234)
T ss_dssp ------------HHHHH----HHHHHHHHHCSSSEEEE
T ss_pred ------------cHHHH----HHHHHHHHHCCCCeEEE
Confidence 02333 355667777765 5443
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00016 Score=70.75 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------c--cccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------H--LLINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~--~~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
.++||.|+|+ |.+|+.++..|...|. ++|+++|+....... . .....+++...+| .++++++|
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~-------~~a~~~aD 75 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT-------YEDCKDAD 75 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC-------GGGGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc-------HHHhCCCC
Confidence 4578999995 9999999999999987 239999985431100 0 0011234444333 24688999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
+||.+|+.... .-.+..+..+.|+.....+.+.+.+++.+-+|.
T Consensus 76 vVvi~ag~p~k--pG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vl 119 (326)
T 3pqe_A 76 IVCICAGANQK--PGETRLELVEKNLKIFKGIVSEVMASGFDGIFL 119 (326)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEecccCCC--CCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999985322 222345678899999999999999987554433
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=4.3e-05 Score=69.03 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHH---HHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE---KAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~---~~l~--~~D~ViH 84 (478)
++++|+||||+|-||..+++.+...|++ |+++++++... ......+... ..|.++.+..+ +... ++|+||+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~-V~~~~~~~~~~--~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~ 113 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDAKR--EMLSRLGVEY-VGDSRSVDFADEILELTDGYGVDVVLN 113 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHHHH--HHHHTTCCSE-EEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCE-EEEEeCCHHHH--HHHHHcCCCE-EeeCCcHHHHHHHHHHhCCCCCeEEEE
Confidence 5689999999999999999999999998 99998764321 1111123322 24776654333 3332 5899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 114 ~~g 116 (198)
T 1pqw_A 114 SLA 116 (198)
T ss_dssp CCC
T ss_pred CCc
Confidence 986
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=70.78 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=74.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCC-CCccc----cc-----ccCCCeEEEEecCCCHHHHHHH
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRT-NSPWS----HL-----LINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~-~~~~~----~~-----~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
|+|++++|.|+|+ |.+|+.++..|...|+ + |+++|+.+ ..... +. ........... .| .+.
T Consensus 4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~-v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t--~d----~~a 75 (315)
T 3tl2_A 4 MTIKRKKVSVIGA-GFTGATTAFLLAQKELAD-VVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT--SD----YAD 75 (315)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE--SC----GGG
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc--CC----HHH
Confidence 3455679999996 9999999999999998 7 99999873 11100 00 00011122111 12 246
Q ss_pred hcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEe
Q 011770 76 ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVS 128 (478)
Q Consensus 76 l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~S 128 (478)
++++|+||-+|+....+ -.+..+..+.|+...+.+.+.+.+++.+ .++.+|
T Consensus 76 ~~~aDvVIiaag~p~kp--g~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 76 TADSDVVVITAGIARKP--GMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp GTTCSEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred hCCCCEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 78999999999853222 2245677889999999999999998755 344444
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00018 Score=70.16 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=64.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------cc-ccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------HL-LINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~~-~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
..++||.|+|+ |.+|+.++..|...|. ++|+++|+....... +. ....+++...+| .++++++|
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~~~aD 78 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE-------YSDAKDAD 78 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-------GGGGTTCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc-------HHHhcCCC
Confidence 45679999996 9999999999999887 239999985431100 00 001234443332 24688999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
+||.+|+.... +-.+..+..+.|+.-...+.+.+.++..+-++.
T Consensus 79 iVvi~ag~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~il 122 (326)
T 3vku_A 79 LVVITAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122 (326)
T ss_dssp EEEECCCCC------------------CHHHHHHHHHTTTCCSEEE
T ss_pred EEEECCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 99999985322 222456678899999999999999987554443
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=9.5e-05 Score=72.19 Aligned_cols=109 Identities=10% Similarity=0.087 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCccc--ccccC-----CCeEEEEecCCCHHHHHHHhcCcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPWS--HLLIN-----HGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~~--~~~~~-----~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
+++||.|+|+ |++|..++..|...|. + |+++|+....... ....+ ..+++. . .+ .++++++|
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~e-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~----~~a~~~aD 76 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANE-LVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GD----YSDVKDCD 76 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSE-EEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCE-EEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CC----HHHhCCCC
Confidence 3468999997 9999999999999887 6 9999987542211 00011 122222 1 12 34688999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
+||.+++.... ......+....|+.....+.+.+.+++.+-+|...|
T Consensus 77 vVii~~g~p~k--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 77 VIVVTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp EEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEEcCCCCCC--CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 99999985321 112344567899999999999999987555555544
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=73.45 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+.+++|+|+|+ |-||..+++.|...|++ |+++|+++..... .....+.. +.+|..+.+++.++++++|+||++++.
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~-V~~~d~~~~~~~~-~~~~~g~~-~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQ-VTILDVNHKRLQY-LDDVFGGR-VITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHHHH-HHHHTTTS-EEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEECCHHHHHH-HHHhcCce-EEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 56789999998 99999999999999997 9999987542110 11101222 457888888999999999999999975
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=5.3e-05 Score=73.70 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=71.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc--cccc------CCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS--HLLI------NHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~--~~~~------~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
++||.|+|| |.+|+.++..|...|+ + |+++|++...... .... ....+.... +| . ++++++|+
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d---~-~a~~~aD~ 73 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NN---Y-ADTANSDV 73 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC---G-GGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CC---H-HHHCCCCE
Confidence 368999998 9999999999999997 7 9999987542110 0000 111222110 22 2 45889999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
||.+++..... .....+....|+.....+.+.+.+.+.+.+|...|
T Consensus 74 Vi~a~g~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 74 IVVTSGAPRKP--GMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp EEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 99999853221 12234566789999999999999987666665554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00027 Score=71.46 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=60.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
+++|+|.|+ |-+|+.+++.|.+.|++ |+++|+++... ......++.++.||.++++.++++ ++++|+||-+..
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~-vvvId~d~~~v--~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVK-MVVLDHDPDHI--ETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCC-EEEEECCHHHH--HHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCC-EEEEECCHHHH--HHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 467999995 99999999999999999 99999875521 122345788899999999999887 788999987764
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00057 Score=67.22 Aligned_cols=94 Identities=19% Similarity=0.123 Sum_probs=57.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEe-cCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~-r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+++|+|.||+|++|+.|++.|.++++. +++++. ++.... .. ...+.+....|. |++ .++++|+||-+.+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~--~~-~~~g~~i~~~~~-~~~----~~~~~DvV~~a~g 77 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ--RM-GFAESSLRVGDV-DSF----DFSSVGLAFFAAA 77 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC--EE-EETTEEEECEEG-GGC----CGGGCSEEEECSC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCC--cc-ccCCcceEEecC-CHH----HhcCCCEEEEcCC
Confidence 468999999999999999999977654 255553 332211 01 011112111222 121 2568999999886
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
.. .+....+.+.+.|+ ++|.+|+..
T Consensus 78 ~~------------------~s~~~a~~~~~aG~-kvId~Sa~~ 102 (340)
T 2hjs_A 78 AE------------------VSRAHAERARAAGC-SVIDLSGAL 102 (340)
T ss_dssp HH------------------HHHHHHHHHHHTTC-EEEETTCTT
T ss_pred cH------------------HHHHHHHHHHHCCC-EEEEeCCCC
Confidence 21 23456777888898 578878753
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0011 Score=64.85 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc--ccc--------cCCCeEEEEecCCCHHHHHHHhcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS--HLL--------INHGVHCIQGDVVSKIDVEKAARG 78 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~--~~~--------~~~~v~~v~gDl~d~~~l~~~l~~ 78 (478)
+++||.|+|| |.+|+.++..|...|+ + |++.|+++..... ... ...+++. ..++++++++
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-------t~d~~ea~~~ 78 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-------EYSYEAALTG 78 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-------ECSHHHHHTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-------eCCHHHHhCC
Confidence 3579999997 9999999999999998 8 9999987642111 000 0111211 1234557899
Q ss_pred cCEEEEcccCCCCchhhh---chhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 79 VDCVFHVASYGMSGKEML---QFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~---~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
+|+||-+++.......+. ...+....|+.-.+.+.+.+.+...+-++...|
T Consensus 79 aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 79 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 999999997432111100 234557788899999999999886444444333
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00021 Score=67.92 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=56.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEE-EecCCCCccc-ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRA-FDLRTNSPWS-HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~-l~r~~~~~~~-~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
|+|+||.|+|++|.+|+.+++.+.+. +++ +++ ++++.+.... ......+... ++.-.++++++++++|+||++
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~e-Lv~~~d~~~~~~~G~d~gel~g~~~---gv~v~~dl~~ll~~~DVVIDf 80 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDAT-LVGALDRTGSPQLGQDAGAFLGKQT---GVALTDDIERVCAEADYLIDF 80 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEE-EEEEBCCTTCTTTTSBTTTTTTCCC---SCBCBCCHHHHHHHCSEEEEC
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEEecCcccccccHHHHhCCCC---CceecCCHHHHhcCCCEEEEc
Confidence 45689999999999999999999875 555 666 5665431100 0000001110 121123455566689999998
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
+.. ..+...++.|.++|+ ++|
T Consensus 81 T~p------------------~a~~~~~~~al~~G~-~vV 101 (272)
T 4f3y_A 81 TLP------------------EGTLVHLDAALRHDV-KLV 101 (272)
T ss_dssp SCH------------------HHHHHHHHHHHHHTC-EEE
T ss_pred CCH------------------HHHHHHHHHHHHcCC-CEE
Confidence 731 123456778888886 444
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=9.8e-05 Score=72.13 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccc--cc------cCCCeEEEEecCCCHHHHHHHhcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSH--LL------INHGVHCIQGDVVSKIDVEKAARG 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~--~~------~~~~v~~v~gDl~d~~~l~~~l~~ 78 (478)
+|+++||.|+|+ |.+|+.++..|...|+ + |+++|+.+...... .. .....+.... .|. +++++
T Consensus 4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t--~d~----~a~~~ 75 (324)
T 3gvi_A 4 SMARNKIALIGS-GMIGGTLAHLAGLKELGD-VVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA--NDY----AAIEG 75 (324)
T ss_dssp --CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SSG----GGGTT
T ss_pred CCcCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe--CCH----HHHCC
Confidence 356789999997 9999999999999998 7 99999876531100 00 0012222211 122 47889
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEe
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVS 128 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~S 128 (478)
+|+||.+|+.... .-.+..+....|+...+.+.+.+.+++.+ .++.+|
T Consensus 76 aDiVIiaag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 76 ADVVIVTAGVPRK--PGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp CSEEEECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCEEEEccCcCCC--CCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 9999999985322 11234567788999999999999998754 344443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00086 Score=65.33 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------cc--ccCCCeEEEEecCCCHHHHHHHhcCc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------HL--LINHGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~~--~~~~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
|+++||.|+|| |.+|+.++..|...|. ++|.++|+.+..... .. .....+++. +| + .++++++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~-~~--~----~~a~~~a 75 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK-AG--E----YSDCHDA 75 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEE-EC--C----GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEE-eC--C----HHHhCCC
Confidence 45679999998 9999999999998874 339999876421100 00 001233333 22 2 4468899
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
|+||-+|+..... ..........|+.....+.+.+.+++.+-+|.+.|
T Consensus 76 DvVvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 76 DLVVICAGAAQKP--GETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CEEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999999864321 12344567889999999999999987555554444
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=1.7e-05 Score=72.61 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=47.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEE-ecCCCHHHHHHHhcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQ-GDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~-gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|+|+|+||+|++|+++++.|.+.|++ |++++|++.......... +. ++. +|+. .+++.++++++|+||++..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~-V~~~~r~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~~D~Vi~~~~ 73 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSRREEKAEAKAAEY-RR-IAGDASIT-GMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSHHHHHHHHHHH-HH-HHSSCCEE-EEEHHHHHHHCSEEEECSC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh-cc-ccccCCCC-hhhHHHHHhcCCEEEEeCC
Confidence 47999999999999999999999998 999998654211100000 00 000 1121 1235566778999999974
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0003 Score=68.24 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=71.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc-CC-ceEEEEecCCCCc-ccccccC--CCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR-GA-YQVRAFDLRTNSP-WSHLLIN--HGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~-G~-~~V~~l~r~~~~~-~~~~~~~--~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|||.|+||+|.||+.++..|..+ +. ++++++|+.+... ......+ ...+.... .+ +...+.++++|+||-+|
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~-~~--~~~~~~~~~aDivii~a 77 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SG--EDATPALEGADVVLISA 77 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEE-CS--SCCHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEe-cC--CCcHHHhCCCCEEEEeC
Confidence 58999999999999999998875 43 3499999875211 0011111 11222111 11 11345778999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeE
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~ 124 (478)
+.... +-.+..+..+.|+...+.+.+.+.+++.+-+
T Consensus 78 g~~rk--pG~~R~dll~~N~~I~~~i~~~i~~~~p~a~ 113 (312)
T 3hhp_A 78 GVARK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC 113 (312)
T ss_dssp SCSCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcE
Confidence 85322 2234567889999999999999999875433
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00094 Score=64.82 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc------ccCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL------LINHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~------~~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
.+.+++++|+|+ |-+|+.++..|.+.|..+|++++|+++...... ....+.+....++.+.+++.+.+.++|+
T Consensus 151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi 229 (315)
T 3tnl_A 151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI 229 (315)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence 467899999996 899999999999999944999988743111100 0112344555678888888888999999
Q ss_pred EEEcccCCCC
Q 011770 82 VFHVASYGMS 91 (478)
Q Consensus 82 ViHlAa~~~~ 91 (478)
||++.+.++.
T Consensus 230 IINaTp~Gm~ 239 (315)
T 3tnl_A 230 FTNATGVGMK 239 (315)
T ss_dssp EEECSSTTST
T ss_pred EEECccCCCC
Confidence 9999886654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0015 Score=63.64 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc--ccccC------CCeEEEEecCCCHHHHHHHhcCc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS--HLLIN------HGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~--~~~~~------~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
|+++||.|+| +|.+|+.++..|...|. + |+++|+.+..... ....+ ...+.. +. .| .++++++
T Consensus 3 m~~~kI~iiG-aG~vG~~~a~~l~~~~~~~-v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~-~t-~d----~~a~~~a 74 (321)
T 3p7m_A 3 MARKKITLVG-AGNIGGTLAHLALIKQLGD-VVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR-GT-ND----YKDLENS 74 (321)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE-EE-SC----GGGGTTC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCce-EEEEeCChHHHHHHHHHHHhhhhhcCCCcEEE-Ec-CC----HHHHCCC
Confidence 4467999999 59999999999999887 7 9999987653110 00111 122222 11 12 2478899
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEE
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYV 127 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~ 127 (478)
|+||.+|+....+ -....+....|+...+.+.+.+.++..+ .++.+
T Consensus 75 DvVIi~ag~p~k~--G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivv 121 (321)
T 3p7m_A 75 DVVIVTAGVPRKP--GMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICI 121 (321)
T ss_dssp SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred CEEEEcCCcCCCC--CCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEe
Confidence 9999999853221 1234567788999999999999998754 34444
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00048 Score=67.92 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=58.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEE-EEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHC-IQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~-v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
|+||.|.||+|++|+.+++.|.+...-+++++.++.+.........+.+.- ...++.+.+ + +.++|+||.+++..
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~---~-~~~vDvV~~a~g~~ 79 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPE---K-LEPADILVLALPHG 79 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGG---G-CCCCSEEEECCCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchh---H-hcCCCEEEEcCCcH
Confidence 579999999999999999999877542377765533221111100000000 011122322 2 47899999998632
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
.+..+...+.+.|+ ++|-.|+.
T Consensus 80 ------------------~s~~~a~~~~~aG~-~VId~Sa~ 101 (345)
T 2ozp_A 80 ------------------VFAREFDRYSALAP-VLVDLSAD 101 (345)
T ss_dssp ------------------HHHHTHHHHHTTCS-EEEECSST
T ss_pred ------------------HHHHHHHHHHHCCC-EEEEcCcc
Confidence 12345666778887 68888885
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=70.08 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC------ceEEEEecCCCCcc----ccccc----CCCeEEEEecCCCHHHHHH
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA------YQVRAFDLRTNSPW----SHLLI----NHGVHCIQGDVVSKIDVEK 74 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~------~~V~~l~r~~~~~~----~~~~~----~~~v~~v~gDl~d~~~l~~ 74 (478)
|...||.|+||+|.||++|+-.|..... .++..+|..+.... ..... +.....+.++ +..+
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~-----~~~~ 96 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA-----DPRV 96 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES-----CHHH
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC-----ChHH
Confidence 4456999999999999999998876532 13888887543110 00011 1112222221 2456
Q ss_pred HhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC--eEEEEe
Q 011770 75 AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ--RLVYVS 128 (478)
Q Consensus 75 ~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~--r~V~~S 128 (478)
+++++|+||-+||.... +-....+..+.|..-.+.+.+++.++..+ +++.+|
T Consensus 97 a~~~advVvi~aG~prk--pGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvs 150 (345)
T 4h7p_A 97 AFDGVAIAIMCGAFPRK--AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVG 150 (345)
T ss_dssp HTTTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred HhCCCCEEEECCCCCCC--CCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeC
Confidence 89999999999996432 22345778999999999999999886532 344444
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00036 Score=68.85 Aligned_cols=74 Identities=22% Similarity=0.188 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh----c-CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA----R-GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l----~-~~D~ViH 84 (478)
.+++|||+||+|-||..+++.+...|++ |+++++++.... .....+... ..|.++.+++.+.+ . ++|+||+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~-V~~~~~~~~~~~--~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~ 244 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYR-VLGIDGGEGKEE--LFRSIGGEV-FIDFTKEKDIVGAVLKATDGGAHGVIN 244 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSTTHHH--HHHHTTCCE-EEETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCc-EEEEcCCHHHHH--HHHHcCCce-EEecCccHhHHHHHHHHhCCCCCEEEE
Confidence 5689999999999999999999999997 999998655221 111123332 24776433333332 2 6899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 245 ~~g 247 (347)
T 2hcy_A 245 VSV 247 (347)
T ss_dssp CSS
T ss_pred CCC
Confidence 987
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=63.76 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=32.3
Q ss_pred CCCCe-EEEE-cCC-----------------ChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 9 IEGKT-FLVT-GGL-----------------GHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 9 ~~~~~-ILVT-Gat-----------------GfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
+.+++ |||| ||| |-.|.+++++++++|++ |+.+.+..+
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~-V~lv~g~~s 90 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYG-VLFLYRARS 90 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCE-EEEEEETTS
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCE-EEEEecCCC
Confidence 35667 9999 667 99999999999999999 999987543
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00016 Score=71.67 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=58.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccC---CCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLIN---HGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~---~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+++||.|.||+|++|+.+++.|.+...-+++++..+.+......... .+.. ..|+...+ ++.++++|+||-|+
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v--~~dl~~~~--~~~~~~vDvVf~at 90 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQK--LPTLVSVK--DADFSTVDAVFCCL 90 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSC--CCCCBCGG--GCCGGGCSEEEECC
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcc--cccceecc--hhHhcCCCEEEEcC
Confidence 44689999999999999999999875423777754432211100000 1110 13433222 33456899999998
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
+... +......+ +.|+ ++|-.|+.
T Consensus 91 p~~~------------------s~~~a~~~-~aG~-~VId~sa~ 114 (359)
T 1xyg_A 91 PHGT------------------TQEIIKEL-PTAL-KIVDLSAD 114 (359)
T ss_dssp CTTT------------------HHHHHHTS-CTTC-EEEECSST
T ss_pred Cchh------------------HHHHHHHH-hCCC-EEEECCcc
Confidence 6421 12345566 6776 68888875
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0027 Score=62.78 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=57.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+++|.|.||||++|..|++.|.++++. ++..+..+.+...... ..+.+...-++.. + .++++|+||-|++.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~--~~~~~~~~~~~~~-~----~~~~~Dvvf~a~~~ 74 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK--FKDQDITIEETTE-T----AFEGVDIALFSAGS 74 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE--ETTEEEEEEECCT-T----TTTTCSEEEECSCH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce--ecCCCceEeeCCH-H----HhcCCCEEEECCCh
Confidence 468999999999999999988887664 2444432222111111 1122222223321 1 25789999998852
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
..+......+.+.|+ ++|=.|+..
T Consensus 75 ------------------~~s~~~a~~~~~~G~-~vIDlSa~~ 98 (366)
T 3pwk_A 75 ------------------STSAKYAPYAVKAGV-VVVDNTSYF 98 (366)
T ss_dssp ------------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred ------------------HhHHHHHHHHHHCCC-EEEEcCCcc
Confidence 112345666677887 788888753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0003 Score=68.94 Aligned_cols=74 Identities=24% Similarity=0.253 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHH----HHHh-cCcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV----EKAA-RGVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l----~~~l-~~~D~ViH 84 (478)
.+++|+||||+|-||..+++.+...|++ |+++++++.... .. ..-+.. ...|.++.+++ .+.. .++|+||+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~-V~~~~~~~~~~~-~~-~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~ 220 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCK-VVGAAGSDEKIA-YL-KQIGFD-AAFNYKTVNSLEEALKKASPDGYDCYFD 220 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCE-EEEEESSHHHHH-HH-HHTTCS-EEEETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HH-HhcCCc-EEEecCCHHHHHHHHHHHhCCCCeEEEE
Confidence 5689999999999999999999999997 999987643211 11 111222 23577662222 2222 26899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 221 ~~g 223 (333)
T 1v3u_A 221 NVG 223 (333)
T ss_dssp SSC
T ss_pred CCC
Confidence 997
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00077 Score=66.18 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
.++++|.|+ |-+|++++++|.++|+ |+++|+++... . ....++.++.||.+|++.++++ ++++|.|+-+.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~--v~vid~~~~~~--~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~ 185 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV--FVLAEDENVRK--K-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDL 185 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE--EEEESCGGGHH--H-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECC
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc--EEEEeCChhhh--h-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcC
Confidence 358999996 9999999999999886 88888765422 2 3346789999999999999987 78999999765
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0016 Score=64.35 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=27.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEec
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDL 44 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r 44 (478)
++||.|.||+|++|+.+++.|.+...-+|+++.+
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 4699999999999999999998765323877754
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0034 Score=61.29 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=73.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------ccc-cCCCeEEEEecCCCHHHHHHHhcC
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------HLL-INHGVHCIQGDVVSKIDVEKAARG 78 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~~~-~~~~v~~v~gDl~d~~~l~~~l~~ 78 (478)
....++||.|+|+ |.+|+.++..|+.+|. ++|+++|+....... +.. .......+.. .|.+ .+++
T Consensus 15 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~----~~~~ 87 (331)
T 4aj2_A 15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDYS----VTAN 87 (331)
T ss_dssp --CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSGG----GGTT
T ss_pred ccCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCHH----HhCC
Confidence 3456789999997 9999999999999987 239999986431100 000 1111222222 2332 5889
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
+|+||.+||.... +-.+..+..+.|+.-...+.+.+.++..+-++
T Consensus 88 aDiVvi~aG~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~v 132 (331)
T 4aj2_A 88 SKLVIITAGARQQ--EGESRLNLVQRNVNIFKFIIPNVVKYSPQCKL 132 (331)
T ss_dssp EEEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CCEEEEccCCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 9999999986322 22345678899999999999999998654333
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0032 Score=61.23 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------cc--ccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------HL--LINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~~--~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
+++||.|+|+ |.+|+.++..|...|. .+|+++|++...... .. .....+++.. | + .++++++|
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~----~~al~~aD 76 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--D----YDDCRDAD 76 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--C----GGGTTTCS
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--c----HHHhCCCC
Confidence 4579999998 9999999999988774 239999987531110 00 0011233332 1 2 24688999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
+||-+++...... ....+....|..-...+.+.+.++..+-+++
T Consensus 77 vViia~~~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~i 120 (316)
T 1ldn_A 77 LVVICAGANQKPG--ETRLDLVDKNIAIFRSIVESVMASGFQGLFL 120 (316)
T ss_dssp EEEECCSCCCCTT--TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEcCCCCCCCC--CCHHHHHHcChHHHHHHHHHHHHHCCCCEEE
Confidence 9999998643322 1335567788888899999998886543333
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00017 Score=69.45 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=71.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCccc------ccc--cCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPWS------HLL--INHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~~------~~~--~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
|||.|+|+ |.+|+.++..|...|+ + |+++|+++..... ... .....+.... +| .++++++|+
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~-v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~aDi 72 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE-IALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLKGSEI 72 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE-EEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCe-EEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhCCCCE
Confidence 58999998 9999999999999987 6 9999987642110 000 1112222211 12 457889999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
||.+|+.... .-.+..+....|+.-.+.+.+.+.+++.+-++
T Consensus 73 VViaag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~i 114 (294)
T 1oju_A 73 IVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKI 114 (294)
T ss_dssp EEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEE
T ss_pred EEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 9999985422 11235567889999999999999998754433
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00042 Score=67.70 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHH---HHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE---KAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~---~~l~--~~D~ViH 84 (478)
.+++|+||||+|-||..+++.+...|++ |+++++++.... .....+... ..|.++.+..+ +... ++|+||+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~-V~~~~~~~~~~~--~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~D~vi~ 215 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKAQ--SALKAGAWQ-VINYREEDLVERLKEITGGKKVRVVYD 215 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEESSHHHHH--HHHHHTCSE-EEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHH--HHHHcCCCE-EEECCCccHHHHHHHHhCCCCceEEEE
Confidence 4689999999999999999999999997 999988643211 111112222 24666544333 3332 6899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 216 ~~g 218 (327)
T 1qor_A 216 SVG 218 (327)
T ss_dssp CSC
T ss_pred CCc
Confidence 997
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.003 Score=61.29 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=69.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCcccc--cc------cCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPWSH--LL------INHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~~~--~~------~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
|||.|+|+ |.+|+.++..|+..|. + |+++|+.+...... .. ...+.+....| + .++++++|+
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~e-l~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~aDv 72 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKE-VVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDSDV 72 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE-EEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCCCE
Confidence 58999996 9999999999999886 5 99999876421100 00 11123332122 2 347889999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
||-+|+.... +-.+..+..+.|+.-.+.+.+.+.+++.+-++
T Consensus 73 Vii~ag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~v 114 (314)
T 3nep_X 73 CIITAGLPRS--PGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTI 114 (314)
T ss_dssp EEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred EEECCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEE
Confidence 9999985322 22245677889999999999999998754433
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0023 Score=63.81 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
.+++++|+|.| +|.+|+.+++.+.+.|++ |+++|..+..+.. .. .-+++.+|..|.+.+.++++++|+|.-
T Consensus 9 ~~~~~~IlIlG-~G~lg~~la~aa~~lG~~-viv~d~~~~~p~~---~~-ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 9 LKFGATIGIIG-GGQLGKMMAQSAQKMGYK-VVVLDPSEDCPCR---YV-AHEFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESCTTCTTG---GG-SSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEECCCCChhh---hh-CCEEEECCCCCHHHHHHHHHhCCccee
Confidence 35678999999 589999999999999999 9999876543211 11 124677999999999999999998743
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0027 Score=62.26 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=57.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
|+||.|.||+|++|+.+++.|.++++. +++++..+.+...........+.+ .|. |++ .++++|+||-|.+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~--~~~-~~~----~~~~vDvVf~a~g~ 75 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRV--QNV-EEF----DWSQVHIALFSAGG 75 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEE--EEG-GGC----CGGGCSEEEECSCH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEE--ecC-ChH----HhcCCCEEEECCCc
Confidence 578999999999999999999987421 266665322211101111112222 222 121 34689999998752
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
. .+......+.+.|+ ++|-.|+.
T Consensus 76 ~------------------~s~~~a~~~~~~G~-~vId~s~~ 98 (336)
T 2r00_A 76 E------------------LSAKWAPIAAEAGV-VVIDNTSH 98 (336)
T ss_dssp H------------------HHHHHHHHHHHTTC-EEEECSST
T ss_pred h------------------HHHHHHHHHHHcCC-EEEEcCCc
Confidence 1 13346667778887 78888876
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0025 Score=59.75 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc----------------cc-----c--cccCCC--eEEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP----------------WS-----H--LLINHG--VHCIQ 63 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~----------------~~-----~--~~~~~~--v~~v~ 63 (478)
+++++|+|.|+ |-+|+.+++.|...|..+|+++|+..-+. .+ . ....+. ++.+.
T Consensus 29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 107 (249)
T 1jw9_B 29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 107 (249)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45689999995 89999999999999985599998875210 00 0 001123 44555
Q ss_pred ecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 64 GDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 64 gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
.+++ .+.+.+.++++|+||.+..- ...-..+.++|++.++ .+|+.+..
T Consensus 108 ~~~~-~~~~~~~~~~~DvVi~~~d~-----------------~~~~~~l~~~~~~~~~-p~i~~~~~ 155 (249)
T 1jw9_B 108 ALLD-DAELAALIAEHDLVLDCTDN-----------------VAVRNQLNAGCFAAKV-PLVSGAAI 155 (249)
T ss_dssp SCCC-HHHHHHHHHTSSEEEECCSS-----------------HHHHHHHHHHHHHHTC-CEEEEEEE
T ss_pred ccCC-HhHHHHHHhCCCEEEEeCCC-----------------HHHHHHHHHHHHHcCC-CEEEeeec
Confidence 5565 35677788899999998631 1122346778888886 57776544
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00076 Score=66.05 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHh--cCcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAA--RGVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l--~~~D~ViH 84 (478)
.+++|+||||+|-||..+++.+...|++ |+++++++.... ....-+.+. ..|.++.+ .+.+.. .++|+||+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~-Vi~~~~~~~~~~--~~~~~g~~~-~~d~~~~~~~~~i~~~~~~~~~d~vi~ 220 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGAT-VIGTVSTEEKAE--TARKLGCHH-TINYSTQDFAEVVREITGGKGVDVVYD 220 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCE-EEEEESSHHHHH--HHHHHTCSE-EEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHHcCCCE-EEECCCHHHHHHHHHHhCCCCCeEEEE
Confidence 4689999999999999999999999997 999998653211 111112222 24666543 333333 26899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 221 ~~g 223 (333)
T 1wly_A 221 SIG 223 (333)
T ss_dssp CSC
T ss_pred CCc
Confidence 997
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00097 Score=65.92 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH---HHHHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID---VEKAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~---l~~~l~--~~D~ViH 84 (478)
.+++|+|+||+|-||..+++.+...|++ |+++++++.... .....+... ..|..+.+. +.+... ++|+||+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~-Vi~~~~~~~~~~--~~~~~ga~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~ 245 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLK-ILGTAGTEEGQK--IVLQNGAHE-VFNHREVNYIDKIKKYVGEKGIDIIIE 245 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHH--HHHHTTCSE-EEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChhHHH--HHHHcCCCE-EEeCCCchHHHHHHHHcCCCCcEEEEE
Confidence 4689999999999999999999999998 999987654211 111122222 246665443 333333 6999999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 246 ~~G 248 (351)
T 1yb5_A 246 MLA 248 (351)
T ss_dssp SCH
T ss_pred CCC
Confidence 987
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00059 Score=67.13 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCH----HHHHHHh-cCcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK----IDVEKAA-RGVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~----~~l~~~l-~~~D~ViH 84 (478)
.+++|||+||+|-||..+++.+...|++ |+++++++.... .....-+... ..|.++. +.+.+.. .++|+||+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~-V~~~~~~~~~~~-~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~ 231 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCY-VVGSAGSKEKVD-LLKTKFGFDD-AFNYKEESDLTAALKRCFPNGIDIYFE 231 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHH-HHHHTSCCSE-EEETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHHcCCce-EEecCCHHHHHHHHHHHhCCCCcEEEE
Confidence 5689999999999999999999999997 999987644211 1111123322 2366543 2333332 26999999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 232 ~~g 234 (345)
T 2j3h_A 232 NVG 234 (345)
T ss_dssp SSC
T ss_pred CCC
Confidence 986
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0014 Score=62.60 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=55.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEE-ecCCCCcc-cccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAF-DLRTNSPW-SHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l-~r~~~~~~-~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
++.||.|.|++|-+|+.+++.+.+. +.+ +++. +++++... .+.....++. ..++.-.+++++++.++|+||.+.
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~e-Lvg~vd~~~~~~~G~d~gel~G~~--~~gv~v~~dl~~ll~~aDVvIDFT 96 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVE-LCAVLVRKGSSFVDKDASILIGSD--FLGVRITDDPESAFSNTEGILDFS 96 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEE-EEEEBCCTTCTTTTSBGGGGTTCS--CCSCBCBSCHHHHTTSCSEEEECS
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEecCCccccccchHHhhccC--cCCceeeCCHHHHhcCCCEEEEcC
Confidence 4468999999999999999998865 566 5555 55433110 0000101110 111211234666778999999987
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
.. ..+...++.|.++|+ .+|
T Consensus 97 ~p------------------~a~~~~~~~~l~~Gv-~vV 116 (288)
T 3ijp_A 97 QP------------------QASVLYANYAAQKSL-IHI 116 (288)
T ss_dssp CH------------------HHHHHHHHHHHHHTC-EEE
T ss_pred CH------------------HHHHHHHHHHHHcCC-CEE
Confidence 31 123446777888886 544
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0047 Score=61.76 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+.+++|+|.| +|.+|..+++.+.+.|++ |+++|..+..+. .... -..+..|..|.+.+.++++.+|+|.
T Consensus 12 ~~~k~IlIlG-~G~~g~~la~aa~~~G~~-vi~~d~~~~~~~---~~~a-d~~~~~~~~d~~~l~~~~~~~dvI~ 80 (389)
T 3q2o_A 12 LPGKTIGIIG-GGQLGRMMALAAKEMGYK-IAVLDPTKNSPC---AQVA-DIEIVASYDDLKAIQHLAEISDVVT 80 (389)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESSTTCTT---TTTC-SEEEECCTTCHHHHHHHHHTCSEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCE-EEEEeCCCCCch---HHhC-CceEecCcCCHHHHHHHHHhCCEee
Confidence 5778999999 588999999999999999 999987654221 1111 2355689999999999999999884
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0013 Score=60.29 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
++++|.|+| +|.+|+.+++.|.+.|++ |++.+|+.... ......+++.. ++.++++++|+||.+..
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~-V~~~~r~~~~~--~~~~~~g~~~~--------~~~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFK-VVVGSRNPKRT--ARLFPSAAQVT--------FQEEAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCC-EEEEESSHHHH--HHHSBTTSEEE--------EHHHHTTSCSEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCE-EEEEeCCHHHH--HHHHHcCCcee--------cHHHHHhCCCEEEECCC
Confidence 457899999 899999999999999998 99998875421 11122244432 24567789999998874
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0019 Score=65.54 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=55.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+-+++++|+|.|| |.+|+.+++.+.+.|++ |+++|..+..+.. ... -+++.+|..|.+.+.++++++|+|+
T Consensus 31 ~~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~-v~v~d~~~~~p~~---~~a-d~~~~~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 31 PILPGAWLGMVGG-GQLGRMFCFAAQSMGYR-VAVLDPDPASPAG---AVA-DRHLRAAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCTTCHHH---HHS-SEEECCCTTCHHHHHHHHHHCSEEE
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEECCCCcCchh---hhC-CEEEECCcCCHHHHHHHHhcCCEEE
Confidence 3456789999995 89999999999999999 9999865443211 111 2456689999999999999999988
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0059 Score=58.52 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=72.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc---cc-----ccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS---HL-----LINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~---~~-----~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
|||.|+|+ |.||+.++..|..++. +++..+|..+..... +. ...........+ |. +.++++|+|
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d~----~~~~~aDvV 73 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DY----SLLKGSEII 73 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--CG----GGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--CH----HHhCCCCEE
Confidence 58999995 9999999999988764 459999986531100 00 011122222221 22 257899999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
|-+||....+ -.++.+..+.|..-.+.+.+.+.+++.+-++.+
T Consensus 74 vitAG~prkp--GmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlv 116 (294)
T 2x0j_A 74 VVTAGLARKP--GMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116 (294)
T ss_dssp EECCCCCCCS--SSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEE
T ss_pred EEecCCCCCC--CCchHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 9999964322 234677889999999999999999986655444
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0028 Score=64.43 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=64.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-CCc--eEEEEecCCCCcccccccCCCeEEEEecCCCH---HHHHHHhcCcCEEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR-GAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK---IDVEKAARGVDCVFH 84 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~-G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~---~~l~~~l~~~D~ViH 84 (478)
+++|+|.| +|-||+.+++.|.++ ++. +|++.|...... ......++++...++++. +.+.+++++.|+|||
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~--~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN 89 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV--DVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLID 89 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC--CHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEE
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh--hHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEE
Confidence 35799999 799999999999886 441 388887655432 111122466766776543 345667777799999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
++-.. ....++++|.+.|+ -|++|+
T Consensus 90 ~s~~~------------------~~l~Im~acleaGv---~YlDTa 114 (480)
T 2ph5_A 90 VSIGI------------------SSLALIILCNQKGA---LYINAA 114 (480)
T ss_dssp CCSSS------------------CHHHHHHHHHHHTC---EEEESS
T ss_pred CCccc------------------cCHHHHHHHHHcCC---CEEECC
Confidence 76321 12348999999997 355554
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.001 Score=65.87 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l~--~~D~ViH 84 (478)
.+++|+|+||+|-||..+++.+...|++ |+++++++.... ....-+.. ...|..+.+ .+.+... ++|+||+
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~-Vi~~~~~~~~~~--~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 237 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAI-PLVTAGSQKKLQ--MAEKLGAA-AGFNYKKEDFSEATLKFTKGAGVNLILD 237 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHH--HHHHHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeCCHHHHH--HHHHcCCc-EEEecCChHHHHHHHHHhcCCCceEEEE
Confidence 4689999999999999999999999998 999987643211 11111222 224665543 3333332 6899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 238 ~~G 240 (354)
T 2j8z_A 238 CIG 240 (354)
T ss_dssp SSC
T ss_pred CCC
Confidence 997
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00047 Score=65.66 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=48.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc-CCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI-NHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~-~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.+++++++|+|+ |-+|+.++..|.+.|.+ |++.+|+.......... ...... |..+.+++.+ .++|+||+++
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~-V~v~~R~~~~~~~la~~~~~~~~~---~~~~~~~~~~--~~~DivVn~t 188 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLDCA-VTITNRTVSRAEELAKLFAHTGSI---QALSMDELEG--HEFDLIINAT 188 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSHHHHHHHHHHTGGGSSE---EECCSGGGTT--CCCSEEEECC
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHhhccCCe---eEecHHHhcc--CCCCEEEECC
Confidence 356789999998 77999999999999987 99998875421111000 000011 2223222222 5899999999
Q ss_pred cCC
Q 011770 87 SYG 89 (478)
Q Consensus 87 a~~ 89 (478)
+..
T Consensus 189 ~~~ 191 (271)
T 1nyt_A 189 SSG 191 (271)
T ss_dssp SCG
T ss_pred CCC
Confidence 854
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0079 Score=56.38 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---------------c--------cccCCC--eEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---------------H--------LLINHG--VHCI 62 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---------------~--------~~~~~~--v~~v 62 (478)
++++++|+|.|+ |-+|+++++.|...|..+++++|...-.... . ....+. ++.+
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 356789999997 5599999999999998768888765321000 0 001123 3344
Q ss_pred EecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 63 QGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 63 ~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
..+++ .+.+.+.++++|+||.+... ...-..+-++|.+.++ .+|+.++..
T Consensus 104 ~~~~~-~~~~~~~~~~~DvVi~~~d~-----------------~~~r~~l~~~~~~~~~-p~i~~~~~g 153 (251)
T 1zud_1 104 QQRLT-GEALKDAVARADVVLDCTDN-----------------MATRQEINAACVALNT-PLITASAVG 153 (251)
T ss_dssp CSCCC-HHHHHHHHHHCSEEEECCSS-----------------HHHHHHHHHHHHHTTC-CEEEEEEEB
T ss_pred eccCC-HHHHHHHHhcCCEEEECCCC-----------------HHHHHHHHHHHHHhCC-CEEEEeccc
Confidence 44443 45677888899999998531 1122346678888886 577776543
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0062 Score=59.40 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc--ccc-----cCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS--HLL-----INHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~--~~~-----~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
.+++||.|+|| |.+|+.++..|...+. .+|+++|+....... ... ...++++. .| + .++++++|
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~~--~----~~a~~~aD 78 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY-SA--E----YSDAKDAD 78 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE-EC--C----GGGGGGCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEE-EC--C----HHHhCCCC
Confidence 34579999998 9999999999988775 239999985431100 000 11233333 22 2 34588999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
+||.+|+..... -....+....|+.....+.+.+.+++.+-+|
T Consensus 79 vVii~ag~~~k~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~i 121 (326)
T 2zqz_A 79 LVVITAGAPQKP--GETRLDLVNKNLKILKSIVDPIVDSGFNGIF 121 (326)
T ss_dssp EEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999864221 1234566789999999999999998754333
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0037 Score=60.39 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=65.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCccc--ccccC-----CCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPWS--HLLIN-----HGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~~--~~~~~-----~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
|||.|+|+ |.+|+.++..|...|+ + |+++|+++..... ....+ ...+... .|. ++++++|+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~e-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~~----~a~~~aDvV 71 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSE-LVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GGH----SELADAQVV 71 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE-EEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---ECG----GGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CCH----HHhCCCCEE
Confidence 48999997 9999999999999998 7 9999987531110 00000 1222222 132 368899999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
|-+++..... .....+....|+.....+.+.+.+...+.+|.
T Consensus 72 Ii~~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi 113 (304)
T 2v6b_A 72 ILTAGANQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLL 113 (304)
T ss_dssp EECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred EEcCCCCCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEE
Confidence 9999743211 12334567889999999999998876444433
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.011 Score=56.51 Aligned_cols=106 Identities=21% Similarity=0.208 Sum_probs=70.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc---------------cc-------ccccCC--CeEE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP---------------WS-------HLLINH--GVHC 61 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~---------------~~-------~~~~~~--~v~~ 61 (478)
+++++..+|+|.| .|-+|+.++..|...|..+++++|...-+. .+ .....+ .++.
T Consensus 31 q~kL~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~ 109 (292)
T 3h8v_A 31 YEKIRTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEV 109 (292)
T ss_dssp -CGGGGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHhCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEE
Confidence 4456778999999 589999999999999987799988654110 00 000122 3555
Q ss_pred EEecCCCHHHHHHHh-----------cCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 62 IQGDVVSKIDVEKAA-----------RGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 62 v~gDl~d~~~l~~~l-----------~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
+..++++.+.+++.+ +++|+||.+.- |...-..+-++|.+.++ .+|+.+..
T Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D-----------------n~~~R~~in~~c~~~~~-Pli~~gv~ 171 (292)
T 3h8v_A 110 HNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD-----------------NFEARMTINTACNELGQ-TWMESGVS 171 (292)
T ss_dssp ECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS-----------------SHHHHHHHHHHHHHHTC-CEEEEEEC
T ss_pred ecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc-----------------chhhhhHHHHHHHHhCC-CEEEeeee
Confidence 666777766666654 58999998763 22222346788999886 67776654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00093 Score=68.57 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=57.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHV 85 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHl 85 (478)
.|+|+|.|+ |-+|++|++.|.+.|++ |+++|.++..- ......-++..+.||-++++.++++ ++++|.+|=+
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~~~-v~vId~d~~~~-~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~ 75 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGENND-ITIVDKDGDRL-RELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAV 75 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTTEE-EEEEESCHHHH-HHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEEC
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCC-EEEEECCHHHH-HHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEE
Confidence 468999995 99999999999999999 99999765421 1112234688999999999999987 5789998844
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0064 Score=59.13 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=67.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------cc-ccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------HL-LINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~~-~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+||.|+|| |.+|+.++..|...+. .+|+++|+....... +. ....++++. .| + .++++++|+||
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~-~~--~----~~a~~~aDvVi 77 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY-SG--E----YSDCKDADLVV 77 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE-EC--C----GGGGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEE-EC--C----HHHhCCCCEEE
Confidence 68999998 9999999999998875 239999985431110 00 011233333 22 2 34688999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
.+|+..... -....+....|+.....+.+.+.+++.+-+|.
T Consensus 78 i~ag~~~~~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~ii 118 (318)
T 1ez4_A 78 ITAGAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118 (318)
T ss_dssp ECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred ECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 999863221 12345677899999999999999987543333
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0017 Score=62.65 Aligned_cols=73 Identities=23% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+++|+|+||+|-+|...++.+...|++ |+++++++.... ....-+...+ .|..+.+++.+.++++|+||+ ++
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~-Vi~~~~~~~~~~--~~~~~ga~~~-~~~~~~~~~~~~~~~~d~vid-~g 197 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLR-VLAAASRPEKLA--LPLALGAEEA-ATYAEVPERAKAWGGLDLVLE-VR 197 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSGGGSH--HHHHTTCSEE-EEGGGHHHHHHHTTSEEEEEE-CS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHhcCCCEE-EECCcchhHHHHhcCceEEEE-CC
Confidence 4689999999999999999999999997 999998654221 1111233322 455551344445588999999 86
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0063 Score=59.54 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=58.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCC---CCccccc-----ccC-CCeEEEEecCCCHHHHHHHhcCcC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRT---NSPWSHL-----LIN-HGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~---~~~~~~~-----~~~-~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
|+||.|.||||++|+.|++.|.+. +++ +..+..++ +...... ... ....+... .|.+ ++.+++|
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~e-l~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~--~~~~---~~~~~~D 77 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMN-ITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM--SDIS---EFSPGVD 77 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEE-EEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE--SSGG---GTCTTCS
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCc-EEEEEecCchhhcCCchHHhCccccCccceeEecc--CCHH---HHhcCCC
Confidence 579999999999999999999884 445 77775544 2111000 111 12222222 0222 2337899
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
+||-|.+.. .+......+.+.|+ ++|=.|+..
T Consensus 78 vvf~a~p~~------------------~s~~~~~~~~~~g~-~vIDlSa~f 109 (337)
T 3dr3_A 78 VVFLATAHE------------------VSHDLAPQFLEAGC-VVFDLSGAF 109 (337)
T ss_dssp EEEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred EEEECCChH------------------HHHHHHHHHHHCCC-EEEEcCCcc
Confidence 999887521 12345666677887 788888863
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.012 Score=58.41 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=56.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHH-cCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVR-RGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~-~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|+||.|.||+|++|+.|++.|++ +++. .++.+..++... ......+.+....|..|++.+ +++|+||-|.+
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~~~~g~~i~~~~~~~~~~~----~~~DvVf~a~g 74 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAPSFGGTTGTLQDAFDLEAL----KALDIIVTCQG 74 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCGGGTCCCBCEETTCHHHH----HTCSEEEECSC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--CccccCCCceEEEecCChHHh----cCCCEEEECCC
Confidence 46899999999999999995444 4432 255554442221 110011122333455555543 58999999886
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEecc
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTY 130 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~ 130 (478)
. ..+......+.+.|++ .+|=.||.
T Consensus 75 ~------------------~~s~~~a~~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 75 G------------------DYTNEIYPKLRESGWQGYWIDAASS 100 (367)
T ss_dssp H------------------HHHHHHHHHHHHTTCCCEEEECSST
T ss_pred c------------------hhHHHHHHHHHHCCCCEEEEcCChh
Confidence 2 1233466677788885 34444543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0013 Score=64.96 Aligned_cols=73 Identities=21% Similarity=0.140 Sum_probs=49.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCCCeEEEEecCCCHHH---HHHHhc-CcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID---VEKAAR-GVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~---l~~~l~-~~D~ViHlA 86 (478)
++||||||+|-||..+++.+...|+ + |+++++++.... .....-+... ..|..+.+. +.+... ++|+||+++
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~-Vi~~~~~~~~~~-~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~d~vi~~~ 238 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSR-VVGICGTHEKCI-LLTSELGFDA-AINYKKDNVAEQLRESCPAGVDVYFDNV 238 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSE-EEEEESCHHHHH-HHHHTSCCSE-EEETTTSCHHHHHHHHCTTCEEEEEESC
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCe-EEEEeCCHHHHH-HHHHHcCCce-EEecCchHHHHHHHHhcCCCCCEEEECC
Confidence 8999999999999999999999999 7 999987643211 1111122222 356665432 333322 699999999
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
+
T Consensus 239 G 239 (357)
T 2zb4_A 239 G 239 (357)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00093 Score=66.37 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-ccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
...++|+|+|+ |-+|+.+++.+...|.+ |++++|++....... .....+. .+..+.+++.+.+.++|+||++++
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~-V~v~dr~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~DvVI~~~~ 239 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQ-VQIFDINVERLSYLETLFGSRVE---LLYSNSAEIETAVAEADLLIGAVL 239 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGSE---EEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHhhCceeE---eeeCCHHHHHHHHcCCCEEEECCC
Confidence 45689999998 99999999999999997 999998754211100 0011121 222355677788889999999997
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 240 ~ 240 (361)
T 1pjc_A 240 V 240 (361)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.017 Score=56.14 Aligned_cols=106 Identities=18% Similarity=0.113 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------cc-ccCCCeEEE-EecCCCHHHHHHHhcCcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------HL-LINHGVHCI-QGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~~-~~~~~v~~v-~gDl~d~~~l~~~l~~~D 80 (478)
..+||.|+|+ |.+|+.++..|+..|. ++|+++|+....... +. ......... ..|. + .++++|
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~------~-~~~daD 91 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY------S-VSAGSK 91 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS------C-SCSSCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH------H-HhCCCC
Confidence 5689999998 9999999999999987 239999985431110 00 011112222 2232 2 278999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
+||-+|+.... +-.+..+....|+.-.+.+.+.+.+++.+-++
T Consensus 92 iVIitaG~p~k--pG~tR~dll~~N~~I~k~i~~~I~k~~P~a~i 134 (330)
T 3ldh_A 92 LVVITAGARQQ--EGESRLNLVQRNVNIFKFIIPNIVKHSPDCLK 134 (330)
T ss_dssp EEEECCSCCCC--SSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred EEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCceE
Confidence 99999986322 22345677889999999999999998755433
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.01 Score=55.23 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=26.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc-CCceEEEEec
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDL 44 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r 44 (478)
+||.|.|++|-+|+.+++.+.+. |++ +++...
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~e-lva~~d 33 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLT-LSAELD 33 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCE-EEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEc
Confidence 47999999999999999999876 887 775543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0017 Score=63.59 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHH---Hh-cCcCEEEEc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK---AA-RGVDCVFHV 85 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~---~l-~~~D~ViHl 85 (478)
.+++|||+||+|-||...++.+...|++ |+++++++.... .....-+... ..|..+.+..+. .. .++|+||++
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~ 225 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCR-VVGIAGGAEKCR-FLVEELGFDG-AIDYKNEDLAAGLKRECPKGIDVFFDN 225 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHH-HHHHTTCCSE-EEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHHcCCCE-EEECCCHHHHHHHHHhcCCCceEEEEC
Confidence 5689999999999999999999999997 999987654211 1102223322 245555433332 22 269999999
Q ss_pred cc
Q 011770 86 AS 87 (478)
Q Consensus 86 Aa 87 (478)
++
T Consensus 226 ~g 227 (336)
T 4b7c_A 226 VG 227 (336)
T ss_dssp SC
T ss_pred CC
Confidence 97
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=64.20 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=68.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccc--cc--------cCCCeEEEEecCCCHHHHHHHhcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSH--LL--------INHGVHCIQGDVVSKIDVEKAARG 78 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~--~~--------~~~~v~~v~gDl~d~~~l~~~l~~ 78 (478)
+++||.|+|| |.+|+.++..|...|+ + |++.|++....... .. ...+++.. +| . +++++
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t----~d---~-~al~~ 82 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE----NN---Y-EYLQN 82 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE----SC---G-GGGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC----CC---H-HHHCC
Confidence 4469999997 9999999999999999 8 99999876422110 00 01112211 22 3 46789
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeE
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~ 124 (478)
+|+||-+++..... . ....+....|+.-...+.+.+.+...+-+
T Consensus 83 aD~VI~avg~p~k~-g-~tr~dl~~~n~~i~~~i~~~i~~~~p~a~ 126 (328)
T 2hjr_A 83 SDVVIITAGVPRKP-N-MTRSDLLTVNAKIVGSVAENVGKYCPNAF 126 (328)
T ss_dssp CSEEEECCSCCCCT-T-CCSGGGHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred CCEEEEcCCCCCCC-C-CchhhHHhhhHHHHHHHHHHHHHHCCCeE
Confidence 99999999743211 1 12234567788888889998888764433
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0029 Score=62.09 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l~--~~D~ViH 84 (478)
.+++|||+||+|-||...++.+...|.+ |+++++++....... .-+... ..|..+.+ .+.+... ++|+||+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~~~~~--~lga~~-~~~~~~~~~~~~~~~~~~~~g~Dvvid 219 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFR-LIAVTRNNKHTEELL--RLGAAY-VIDTSTAPLYETVMELTNGIGADAAID 219 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCE-EEEEESSSTTHHHHH--HHTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHH--hCCCcE-EEeCCcccHHHHHHHHhCCCCCcEEEE
Confidence 4689999999999999999999889997 999998765321111 112222 23544433 3333333 6999999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 220 ~~g 222 (340)
T 3gms_A 220 SIG 222 (340)
T ss_dssp SSC
T ss_pred CCC
Confidence 997
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0059 Score=59.10 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=57.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
...+++++|+|+ |-.|+.++..|.+.|..+|++.+|+.+..... .....+......+..+.+.+.+.+.++|+
T Consensus 145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di 223 (312)
T 3t4e_A 145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI 223 (312)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence 356889999996 89999999999999995599998874311000 00112233444566676555667788999
Q ss_pred EEEcccCCC
Q 011770 82 VFHVASYGM 90 (478)
Q Consensus 82 ViHlAa~~~ 90 (478)
||++.+.++
T Consensus 224 IINaTp~Gm 232 (312)
T 3t4e_A 224 LTNGTKVGM 232 (312)
T ss_dssp EEECSSTTS
T ss_pred EEECCcCCC
Confidence 999988765
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0068 Score=60.30 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=53.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
|++|+|+|+ |..|+.+++.+.+.|++ |++++..+..... ... -.++..|..|.+.+.++++++|.|+-.
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~~-v~~~~~~~~~~~~---~~~-~~~~~~~~~d~~~l~~~~~~~d~v~~~ 69 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGFY-VIVLDPTPRSPAG---QVA-DEQIVAGFFDSERIEDLVKGSDVTTYD 69 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSTTCTTG---GGS-SEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCCCCchh---hhC-ceEEECCCCCHHHHHHHHhcCCEEEec
Confidence 468999996 89999999999999998 9999875442211 111 135678999999999988999998853
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0071 Score=60.85 Aligned_cols=71 Identities=25% Similarity=0.303 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
|++++|+|.|| |.+|..+++.+.+.|++ |+++| .+..+.. ........+.+|..|.+.+.++++.+|+|+-
T Consensus 22 m~~~~I~ilGg-G~lg~~l~~aa~~lG~~-v~~~d-~~~~p~~--~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~ 92 (403)
T 3k5i_A 22 WNSRKVGVLGG-GQLGRMLVESANRLNIQ-VNVLD-ADNSPAK--QISAHDGHVTGSFKEREAVRQLAKTCDVVTA 92 (403)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHTCE-EEEEE-STTCTTG--GGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEE-CCCCcHH--HhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence 45789999995 89999999999999999 99999 5433211 1112224578999999999999999998864
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00031 Score=59.98 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=48.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+++|+|+|+ |.+|+.+++.|.+.|++ |++.+|+....... ...-+.... +. +++.++++++|+||.+.+.
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~-a~~~~~~~~--~~---~~~~~~~~~~Divi~at~~ 90 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYK-VTVAGRNIDHVRAF-AEKYEYEYV--LI---NDIDSLIKNNDVIITATSS 90 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCE-EEEEESCHHHHHHH-HHHHTCEEE--EC---SCHHHHHHTCSEEEECSCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHH-HHHhCCceE--ee---cCHHHHhcCCCEEEEeCCC
Confidence 689999995 99999999999999998 99999875422110 111112221 22 2355667899999999864
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0038 Score=61.76 Aligned_cols=112 Identities=12% Similarity=0.040 Sum_probs=70.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-c---eEEEEecCCCCc------ccccccCC---CeEEEEecCCCHHHHHHHhc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-Y---QVRAFDLRTNSP------WSHLLINH---GVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~---~V~~l~r~~~~~------~~~~~~~~---~v~~v~gDl~d~~~l~~~l~ 77 (478)
.+||.|+||+|.||++++-.|...+. . .|...+...+.. ......+. -..-+. +.+ .-.+.++
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~--i~~--~~y~~~~ 107 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVS--IGI--DPYEVFE 107 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEE--EES--CHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcE--Eec--CCHHHhC
Confidence 46899999999999999999988754 1 155544433210 00011111 111111 121 2356789
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCC-eEEEEe
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQ-RLVYVS 128 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~-r~V~~S 128 (478)
++|+||-+||... .+-.+..+..+.|+.-.+.+.+++.++ +.+ .++.+|
T Consensus 108 daDvVVitag~pr--kpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvs 158 (375)
T 7mdh_A 108 DVDWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 158 (375)
T ss_dssp TCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CCCEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999999998532 222345678899999999999999886 433 344444
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=63.16 Aligned_cols=74 Identities=18% Similarity=0.088 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l~--~~D~ViH 84 (478)
.+++|||+||+|-+|...++.+...|.+ |+++++++.... ....-+... ..|..+.+ .+.+... ++|+||+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~~--~~~~~Ga~~-~~~~~~~~~~~~~~~~~~~~g~Dvvid 215 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAK-LIGTVSSPEKAA--HAKALGAWE-TIDYSHEDVAKRVLELTDGKKCPVVYD 215 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCE-EEEEESSHHHHH--HHHHHTCSE-EEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHHcCCCE-EEeCCCccHHHHHHHHhCCCCceEEEE
Confidence 5689999999999999999999999997 999987644211 111112221 23444433 3333333 6999999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 216 ~~g 218 (325)
T 3jyn_A 216 GVG 218 (325)
T ss_dssp SSC
T ss_pred CCC
Confidence 997
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0022 Score=63.19 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH---HHHHh--cCcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID---VEKAA--RGVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~---l~~~l--~~~D~Vi 83 (478)
.+++|+||||+|-||..+++.+... |.+ |+++++++.... ....-+... ..|..+.+. +.+.. .++|+||
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~-Vi~~~~~~~~~~--~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi 245 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVE--AAKRAGADY-VINASMQDPLAEIRRITESKGVDAVI 245 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCE-EEEEESSHHHHH--HHHHHTCSE-EEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCe-EEEEcCCHHHHH--HHHHhCCCE-EecCCCccHHHHHHHHhcCCCceEEE
Confidence 5689999999999999999999999 998 999987654211 111112222 235555333 45544 3699999
Q ss_pred Eccc
Q 011770 84 HVAS 87 (478)
Q Consensus 84 HlAa 87 (478)
++++
T Consensus 246 ~~~g 249 (347)
T 1jvb_A 246 DLNN 249 (347)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9997
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0063 Score=60.02 Aligned_cols=96 Identities=11% Similarity=-0.009 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEe--cCCCCcccccccCC----------CeEEEEecCCCHHHHHHHhc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD--LRTNSPWSHLLINH----------GVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~--r~~~~~~~~~~~~~----------~v~~v~gDl~d~~~l~~~l~ 77 (478)
+|+||.|.||+|++|+.+++.|.+...-+|+++. ++..... .....+ +......|. |.+. ++
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~----~~ 76 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKK-YKDAVKWIEQGDIPEEVQDLPIVST-NYED----HK 76 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSB-HHHHCCCCSSSSCCHHHHTCBEECS-SGGG----GT
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCC-HHHhcCcccccccccCCceeEEeeC-CHHH----hc
Confidence 3578999999999999999998876432377774 2222110 000000 011111333 3332 36
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
++|+||-|.+. ..+..+...+.+.|+ ++|-.|+.
T Consensus 77 ~vDvVf~atp~------------------~~s~~~a~~~~~aG~-~VId~s~~ 110 (350)
T 2ep5_A 77 DVDVVLSALPN------------------ELAESIELELVKNGK-IVVSNASP 110 (350)
T ss_dssp TCSEEEECCCH------------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred CCCEEEECCCh------------------HHHHHHHHHHHHCCC-EEEECCcc
Confidence 89999977642 113446777888897 57777765
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0021 Score=62.63 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=67.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc--ccc------cCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS--HLL------INHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~--~~~------~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
++||.|+|| |.+|+.++..|...|+ + |+++|+++..... ... .....++... +| . ++++++|+
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~al~~aD~ 75 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS--NT---Y-DDLAGADV 75 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE--CC---G-GGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCCCE
Confidence 468999997 9999999999999998 7 9999987542110 000 0111122110 22 3 46889999
Q ss_pred EEEcccCCCCchhh---hchhhhhHhhhHHHHHHHHHHHHcCCC
Q 011770 82 VFHVASYGMSGKEM---LQFGRVDEVNINGTCHVIEACLEFGIQ 122 (478)
Q Consensus 82 ViHlAa~~~~~~~~---~~~~~~~~vNv~gt~nll~aa~~~~v~ 122 (478)
||-+++........ ....+....|+.-.+.+.+.+.+...+
T Consensus 76 Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~ 119 (322)
T 1t2d_A 76 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119 (322)
T ss_dssp EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999743211100 003455677888888899888887644
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0021 Score=61.45 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=55.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cc--cCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LL--INHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~--~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
...+++++|+|+ |-+|+.++..|.+.|..+|++.+|+....... .. ....++....+. +++.+.++++|+||
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~---~~l~~~l~~~DiVI 199 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA---RGIEDVIAAADGVV 199 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS---TTHHHHHHHSSEEE
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH---HHHHHHHhcCCEEE
Confidence 356789999997 89999999999999995599998875422110 00 111233333443 34556777899999
Q ss_pred EcccCCCC
Q 011770 84 HVASYGMS 91 (478)
Q Consensus 84 HlAa~~~~ 91 (478)
++.+.++.
T Consensus 200 naTp~Gm~ 207 (283)
T 3jyo_A 200 NATPMGMP 207 (283)
T ss_dssp ECSSTTST
T ss_pred ECCCCCCC
Confidence 99886654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0057 Score=58.87 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
++++|.|.||+|.+|+.++..|.+.|++ |++.+|++. .+..++++++|+||-+.-
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~-V~~~~~~~~----------------------~~~~~~~~~aDvVilavp 74 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYP-ISILDREDW----------------------AVAESILANADVVIVSVP 74 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTTCG----------------------GGHHHHHTTCSEEEECSC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCe-EEEEECCcc----------------------cCHHHHhcCCCEEEEeCC
Confidence 3468999999999999999999999998 999987542 124567789999998763
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0022 Score=62.78 Aligned_cols=74 Identities=23% Similarity=0.203 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l~--~~D~ViH 84 (478)
.+++|||+||+|-||...++.+...|.+ |+++++++.... ....-+... ..|..+.+ .+.+... ++|+||+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~~--~~~~~ga~~-~~~~~~~~~~~~~~~~~~~~g~D~vid 223 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAH-TIAVASTDEKLK--IAKEYGAEY-LINASKEDILRQVLKFTNGKGVDASFD 223 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSHHHHH--HHHHTTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHHcCCcE-EEeCCCchHHHHHHHHhCCCCceEEEE
Confidence 5689999999999999999999999998 999988644211 111122222 23444433 3344332 6899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 224 ~~g 226 (334)
T 3qwb_A 224 SVG 226 (334)
T ss_dssp CCG
T ss_pred CCC
Confidence 997
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0022 Score=63.27 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH---HHHHh-cCcCEEEEc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID---VEKAA-RGVDCVFHV 85 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~---l~~~l-~~~D~ViHl 85 (478)
.+++|||+||+|-||...++.+...|.+ |+++++++.... ....-+... ..|..+.+. +.+.. .++|+||++
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~~--~~~~lGa~~-~~~~~~~~~~~~~~~~~~~g~Dvvid~ 242 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAE-VYATAGSTGKCE--ACERLGAKR-GINYRSEDFAAVIKAETGQGVDIILDM 242 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHH--HHHHHTCSE-EEETTTSCHHHHHHHHHSSCEEEEEES
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHH--HHHhcCCCE-EEeCCchHHHHHHHHHhCCCceEEEEC
Confidence 5689999999999999999999999998 999997654211 111112221 235444332 22222 369999999
Q ss_pred cc
Q 011770 86 AS 87 (478)
Q Consensus 86 Aa 87 (478)
++
T Consensus 243 ~g 244 (353)
T 4dup_A 243 IG 244 (353)
T ss_dssp CC
T ss_pred CC
Confidence 97
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0035 Score=61.54 Aligned_cols=75 Identities=28% Similarity=0.269 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeE-EEEecCCC-HHHHHHHhc--CcCEEEEc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH-CIQGDVVS-KIDVEKAAR--GVDCVFHV 85 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~-~v~gDl~d-~~~l~~~l~--~~D~ViHl 85 (478)
.+++|||+||+|-||...++.+...|.+ |+++++++.... ....-+.. .+..+ .+ .+.+.+... ++|+||++
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~~--~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~ 234 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAK-VIAVVNRTAATE--FVKSVGADIVLPLE-EGWAKAVREATGGAGVDMVVDP 234 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSGGGHH--HHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHH--HHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEEEEC
Confidence 4689999999999999999999999997 999988654321 11111222 22223 22 223444443 59999999
Q ss_pred ccC
Q 011770 86 ASY 88 (478)
Q Consensus 86 Aa~ 88 (478)
++.
T Consensus 235 ~g~ 237 (342)
T 4eye_A 235 IGG 237 (342)
T ss_dssp CC-
T ss_pred Cch
Confidence 973
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0025 Score=61.41 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc-CCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI-NHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~-~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.+.+++|+|+|+ |-+|+.++..|.+.|..+|++.+|+.......... ..... ++.+.+++.+.++++|+||++.
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~----~~~~~~~~~~~~~~aDivIn~t 212 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS----AYFSLAEAETRLAEYDIIINTT 212 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC----CEECHHHHHHTGGGCSEEEECS
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC----ceeeHHHHHhhhccCCEEEECC
Confidence 356789999996 78999999999999984499998875421111000 01000 2223456777888999999999
Q ss_pred cCCC
Q 011770 87 SYGM 90 (478)
Q Consensus 87 a~~~ 90 (478)
+.++
T Consensus 213 ~~~~ 216 (297)
T 2egg_A 213 SVGM 216 (297)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0026 Score=62.51 Aligned_cols=74 Identities=19% Similarity=0.047 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l~--~~D~ViH 84 (478)
.+++|||+||+|-+|..+++.+...|++ |+++++++.... ....-+... ..|.++.+ .+.+... ++|+||+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~-Vi~~~~~~~~~~--~~~~~ga~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~ 241 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGAR-VIATAGSEDKLR--RAKALGADE-TVNYTHPDWPKEVRRLTGGKGADKVVD 241 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCE-EEEEESSHHHHH--HHHHHTCSE-EEETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHhcCCCE-EEcCCcccHHHHHHHHhCCCCceEEEE
Confidence 4689999999999999999999999997 999988644211 111112222 24666543 3444432 6899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 242 ~~g 244 (343)
T 2eih_A 242 HTG 244 (343)
T ss_dssp SSC
T ss_pred CCC
Confidence 997
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0035 Score=62.53 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc-cCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-INHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~-~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.+.+++|+|+|+ |-||+.+++.+...|.+ |+++|+++........ ....+ ..+..+.+++.+.++++|+||.++
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~-V~~~d~~~~~l~~~~~~~g~~~---~~~~~~~~~l~~~l~~aDvVi~~~ 239 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGAT-VTVLDINIDKLRQLDAEFCGRI---HTRYSSAYELEGAVKRADLVIGAV 239 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHTTTSS---EEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHhcCCee---EeccCCHHHHHHHHcCCCEEEECC
Confidence 367899999997 99999999999999997 9999987542110011 11111 234455677888888999999988
Q ss_pred cC
Q 011770 87 SY 88 (478)
Q Consensus 87 a~ 88 (478)
+.
T Consensus 240 ~~ 241 (377)
T 2vhw_A 240 LV 241 (377)
T ss_dssp CC
T ss_pred Cc
Confidence 74
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.021 Score=55.94 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=56.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
++|.|.||||++|..|++.|.++.+. ++..+..+.+...... -.+.+...-|+.+ +.++++|+||-|++..
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~--~~~~~~~~~~~~~-----~~~~~~Dvvf~a~~~~ 74 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA--FRGQEIEVEDAET-----ADPSGLDIALFSAGSA 74 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE--ETTEEEEEEETTT-----SCCTTCSEEEECSCHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee--ecCCceEEEeCCH-----HHhccCCEEEECCChH
Confidence 58999999999999999988887543 2555542222111111 1122222233332 2347899999998621
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
.+......+.+.|+ ++|=.|+.
T Consensus 75 ------------------~s~~~a~~~~~~G~-~vID~Sa~ 96 (344)
T 3tz6_A 75 ------------------MSKVQAPRFAAAGV-TVIDNSSA 96 (344)
T ss_dssp ------------------HHHHHHHHHHHTTC-EEEECSST
T ss_pred ------------------HHHHHHHHHHhCCC-EEEECCCc
Confidence 12345566677787 77878875
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0083 Score=58.03 Aligned_cols=106 Identities=14% Similarity=0.039 Sum_probs=66.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCCCccccc---c-----cCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTNSPWSHL---L-----INHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~~~~~~~---~-----~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
|+|.|+| +|.+|+.++..|.+.| ++ |+++|+++....... . ....+.... .|. ++++++|+
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~-V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~d~----~~~~~aDv 72 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADD-YVFIDANEAKVKADQIDFQDAMANLEAHGNIVI---NDW----AALADADV 72 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSE-EEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE---SCG----GGGTTCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe---CCH----HHhCCCCE
Confidence 6899999 7999999999999999 66 999998753211100 0 011233322 232 35789999
Q ss_pred EEEcccCCCC-c-hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 82 VFHVASYGMS-G-KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 82 ViHlAa~~~~-~-~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
||-++..... + .......+....|+.....+++.+.+...+.+|.
T Consensus 73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii 119 (309)
T 1hyh_A 73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLV 119 (309)
T ss_dssp EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 9999874221 0 0111234566788888888999888876443433
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0034 Score=58.52 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEE-EecCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRA-FDLRT 46 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~-l~r~~ 46 (478)
+|+||.|+|+ |.+|+.+++.+.+++.+ +++ +|+.+
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~e-Lva~~d~~~ 37 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGHE-IVGVIENTP 37 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEECSSC
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCCE-EEEEEecCc
Confidence 3579999999 99999999999998775 776 56554
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.025 Score=54.85 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--c------cCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--L------INHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--~------~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
+++|.|+|+ |.+|+.++..|.+.|+ + |++.|+++....... . ......+... +| . ++++++|+
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~a~~~aDi 75 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLAD-VVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT--DD---Y-ADISGSDV 75 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SC---G-GGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCce-EEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCCCE
Confidence 468999997 9999999999999998 7 999998764211100 0 0001111110 22 2 36789999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe-EEEEe
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR-LVYVS 128 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r-~V~~S 128 (478)
||-+++...... ....+....|....+.+++.+.+...+. +|.+|
T Consensus 76 Vi~avg~p~~~g--~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~s 121 (317)
T 2ewd_A 76 VIITASIPGRPK--DDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121 (317)
T ss_dssp EEECCCCSSCCS--SCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 999997532211 1233455667777888888888775433 33343
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0007 Score=70.69 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHH-HhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK-AARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~-~l~~~D~ViHlAa 87 (478)
+++++++|||| |-+|++++..|.+.|++ |++++|+........... +.+.+ ++.| +.+ ...++|+|||+++
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~-V~i~~R~~~~a~~la~~~-~~~~~--~~~d---l~~~~~~~~DilVN~ag 433 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAK-VVIANRTYERALELAEAI-GGKAL--SLTD---LDNYHPEDGMVLANTTS 433 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC--CEEEESSHHHHHHHHHHT-TC-CE--ETTT---TTTC--CCSEEEEECSS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHc-CCcee--eHHH---hhhccccCceEEEECCC
Confidence 56789999998 79999999999999997 999988744211110000 11111 2222 222 1235899999999
Q ss_pred CCCCc---------hhhhchhhhhHhhhHHH-HHHHHHHHHcCC
Q 011770 88 YGMSG---------KEMLQFGRVDEVNINGT-CHVIEACLEFGI 121 (478)
Q Consensus 88 ~~~~~---------~~~~~~~~~~~vNv~gt-~nll~aa~~~~v 121 (478)
.++.+ .........+++|+.+. ..+++.+++.|.
T Consensus 434 vg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G~ 477 (523)
T 2o7s_A 434 MGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGA 477 (523)
T ss_dssp TTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTTC
T ss_pred CCCCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCCC
Confidence 75421 11122345667776542 246666766664
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0038 Score=59.44 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
..+++++|+|+ |-+|+.++..|.+.|..+|++.+|+...... . ...+.. ...+++.++++++|+||++.+.
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~--l-a~~~~~-----~~~~~~~~~~~~aDiVInaTp~ 185 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNN--W-SLNINK-----INLSHAESHLDEFDIIINTTPA 185 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTT--C-CSCCEE-----ECHHHHHHTGGGCSEEEECCC-
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH--H-HHhccc-----ccHhhHHHHhcCCCEEEECccC
Confidence 56789999996 8999999999999999339999887653211 1 112222 2356677778899999999876
Q ss_pred CC
Q 011770 89 GM 90 (478)
Q Consensus 89 ~~ 90 (478)
++
T Consensus 186 Gm 187 (277)
T 3don_A 186 GM 187 (277)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0088 Score=59.28 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
.+.+|||+|+ |-||...++.+...|.+ |+++++++.... .....-+... ..|..+.+.+.++..++|+||++++.
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~-Vi~~~~~~~~~~-~~~~~lGa~~-v~~~~~~~~~~~~~~~~D~vid~~g~ 261 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSK-VTVISTSPSKKE-EALKNFGADS-FLVSRDQEQMQAAAGTLDGIIDTVSA 261 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCGGGHH-HHHHTSCCSE-EEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHhcCCce-EEeccCHHHHHHhhCCCCEEEECCCc
Confidence 5789999996 99999999999999997 999987654221 1111223332 24777777777777789999999974
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.015 Score=59.41 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=55.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC--cccccccCCCeEEEEecCCCHHHHHHHhcC-cCEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS--PWSHLLINHGVHCIQGDVVSKIDVEKAARG-VDCVF 83 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~--~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~-~D~Vi 83 (478)
+.+++++|+|.|. |-.|..+++.|.++|++ |.+.|++... .........++++..+.-.+ +.+++ +|.||
T Consensus 5 ~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~-V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~-----~~~~~~~d~vv 77 (451)
T 3lk7_A 5 TTFENKKVLVLGL-ARSGEAAARLLAKLGAI-VTVNDGKPFDENPTAQSLLEEGIKVVCGSHPL-----ELLDEDFCYMI 77 (451)
T ss_dssp CTTTTCEEEEECC-TTTHHHHHHHHHHTTCE-EEEEESSCGGGCHHHHHHHHTTCEEEESCCCG-----GGGGSCEEEEE
T ss_pred hhcCCCEEEEEee-CHHHHHHHHHHHhCCCE-EEEEeCCcccCChHHHHHHhCCCEEEECCChH-----HhhcCCCCEEE
Confidence 3467899999997 88999999999999999 9999986531 11122344578877665422 23455 89999
Q ss_pred EcccCC
Q 011770 84 HVASYG 89 (478)
Q Consensus 84 HlAa~~ 89 (478)
...|+.
T Consensus 78 ~spgi~ 83 (451)
T 3lk7_A 78 KNPGIP 83 (451)
T ss_dssp ECTTSC
T ss_pred ECCcCC
Confidence 988864
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.01 Score=56.13 Aligned_cols=57 Identities=26% Similarity=0.413 Sum_probs=49.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++++|.|++|.+|+.++..|.++|.+ |++++++.. ++.+.++.+|+||...+
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAt-Vtv~h~~t~-----------------------~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGAT-VSVCHIKTK-----------------------DLSLYTRQADLIIVAAG 212 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTCS-----------------------CHHHHHTTCSEEEECSS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCch-----------------------hHHHHhhcCCEEEECCC
Confidence 468899999999999999999999999998 999875421 36678899999999887
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 213 ~ 213 (285)
T 3p2o_A 213 C 213 (285)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.023 Score=54.94 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCcc--ccc-c----cCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPW--SHL-L----INHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~--~~~-~----~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
++|||.|+|+ |.+|+.++..|.+.|+ + |+++|+++.... ... . .......... +|. +.++++|
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~aD 77 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIARE-IVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICRDAD 77 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCSE-EEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCE-EEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CCH----HHhCCCC
Confidence 3579999997 9999999999999998 7 999998753211 000 0 0012222221 122 2567899
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
+||-+++..... ..+..+....|+.....+++...+.+.+.+|..
T Consensus 78 ~Vii~v~~~~~~--g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~ 122 (319)
T 1lld_A 78 MVVITAGPRQKP--GQSRLELVGATVNILKAIMPNLVKVAPNAIYML 122 (319)
T ss_dssp EEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 999999743221 122345667888888888888887654444433
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.003 Score=61.28 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=66.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCCCccccc--ccC------CCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTNSPWSHL--LIN------HGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~~~~~~~--~~~------~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
|||.|+|+ |.+|+.++..|.+. |++ |+++|+++....... ..+ ........ +|. ++ ++++|+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d~---~~-l~~aDv 72 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARE-LVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY---AD-TANSDI 72 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG---GG-GTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE-EEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC--CCH---HH-HCCCCE
Confidence 47999998 99999999999885 677 999998764211100 000 11111110 232 23 789999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r 123 (478)
||-+++.... ......+....|+.....+.+.+.++..+.
T Consensus 73 Viiav~~p~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~ 112 (310)
T 1guz_A 73 VIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNP 112 (310)
T ss_dssp EEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred EEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999974221 111234566788999999999998886443
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.028 Score=55.52 Aligned_cols=95 Identities=16% Similarity=0.018 Sum_probs=54.5
Q ss_pred CeEEEEcCCChhHHHHHH-HHHHcCC--ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCL-ELVRRGA--YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~-~L~~~G~--~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
++|.|.||||++|+.|++ .|.++.+ .++..++-++... ....-.+.+...-|..+.++ ++++|+||-|++.
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~--~~~~~~~~~~~~~~~~~~~~----~~~~Dvvf~a~~~ 74 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--PAPNFGKDAGMLHDAFDIES----LKQLDAVITCQGG 74 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCCSSSCCCBCEETTCHHH----HTTCSEEEECSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCc--CHHHhCCCceEEEecCChhH----hccCCEEEECCCh
Confidence 479999999999999999 6655542 2366664333221 11101111111224444333 4789999999862
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEecc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTY 130 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~ 130 (478)
. -+......+.+.|++ ++|=.||.
T Consensus 75 ~------------------~s~~~~~~~~~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 75 S------------------YTEKVYPALRQAGWKGYWIDAAST 99 (370)
T ss_dssp H------------------HHHHHHHHHHHTTCCCEEEECSST
T ss_pred H------------------HHHHHHHHHHHCCCCEEEEeCCch
Confidence 1 123455666677874 56666653
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.00046 Score=66.31 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=49.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc-CC----CeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI-NH----GVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~-~~----~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
.+++++++|||+ |-+|+.++..|.+.| + |++.+|+.......... .. .. .+.+|+.|. .+.+.++|+|
T Consensus 125 ~l~~k~vlV~Ga-GgiG~aia~~L~~~G-~-V~v~~r~~~~~~~l~~~~~~~~~~~~-~~~~d~~~~---~~~~~~~Dil 197 (287)
T 1nvt_A 125 RVKDKNIVIYGA-GGAARAVAFELAKDN-N-IIIANRTVEKAEALAKEIAEKLNKKF-GEEVKFSGL---DVDLDGVDII 197 (287)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS-E-EEEECSSHHHHHHHHHHHHHHHTCCH-HHHEEEECT---TCCCTTCCEE
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHCC-C-EEEEECCHHHHHHHHHHHhhhccccc-ceeEEEeeH---HHhhCCCCEE
Confidence 356789999998 499999999999999 7 99998864321110000 00 00 012344332 3455689999
Q ss_pred EEcccCCC
Q 011770 83 FHVASYGM 90 (478)
Q Consensus 83 iHlAa~~~ 90 (478)
|++++.+.
T Consensus 198 Vn~ag~~~ 205 (287)
T 1nvt_A 198 INATPIGM 205 (287)
T ss_dssp EECSCTTC
T ss_pred EECCCCCC
Confidence 99998754
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0015 Score=63.39 Aligned_cols=105 Identities=20% Similarity=0.154 Sum_probs=70.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc--cccc-----CCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS--HLLI-----NHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~--~~~~-----~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
|||.|+|| |.+|+.++..|...+. .+|+++|+....... .... ..++++. .| + .++++++|+||
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~-~~--~----~~a~~~aD~Vi 72 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVW-AG--S----YGDLEGARAVV 72 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEE-EC--C----GGGGTTEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEE-EC--C----HHHhCCCCEEE
Confidence 58999998 9999999999988762 239999986431110 0000 1233333 22 3 33588999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
.+|+....+ -....+....|+.....+.+.+.+++.+-+|.
T Consensus 73 i~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~ii 113 (310)
T 2xxj_A 73 LAAGVAQRP--GETRLQLLDRNAQVFAQVVPRVLEAAPEAVLL 113 (310)
T ss_dssp ECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred ECCCCCCCC--CcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEE
Confidence 999864322 12345667889999999999999987544333
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0087 Score=59.09 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc-----C-------CCeEEEEecCCCHHHHHHHhc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI-----N-------HGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~-----~-------~~v~~v~gDl~d~~~l~~~l~ 77 (478)
++.+|.|.||||++|..|++.|.+.-.-++..+..+.+........ + ....+... +.+ .++
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~----~~~ 78 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPT---DPK----LMD 78 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEEC---CGG----GCT
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeC---CHH----Hhc
Confidence 3568999999999999999977665432366664333211110000 0 01121111 222 246
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
++|+||-|.+... +..+...+.+.|+ ++|=.|+..
T Consensus 79 ~vDvvf~a~p~~~------------------s~~~a~~~~~~G~-~vIDlSa~~ 113 (359)
T 4dpl_A 79 DVDIIFSPLPQGA------------------AGPVEEQFAKEGF-PVISNSPDH 113 (359)
T ss_dssp TCCEEEECCCTTT------------------HHHHHHHHHHTTC-EEEECSSTT
T ss_pred CCCEEEECCChHH------------------HHHHHHHHHHCCC-EEEEcCCCc
Confidence 8999999986321 1124555667787 778888763
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0087 Score=59.09 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc-----C-------CCeEEEEecCCCHHHHHHHhc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI-----N-------HGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~-----~-------~~v~~v~gDl~d~~~l~~~l~ 77 (478)
++.+|.|.||||++|..|++.|.+.-.-++..+..+.+........ + ....+... +.+ .++
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~----~~~ 78 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPT---DPK----LMD 78 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEEC---CGG----GCT
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeC---CHH----Hhc
Confidence 3568999999999999999977665432366664333211110000 0 01121111 222 246
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
++|+||-|.+... +..+...+.+.|+ ++|=.|+..
T Consensus 79 ~vDvvf~a~p~~~------------------s~~~a~~~~~~G~-~vIDlSa~~ 113 (359)
T 4dpk_A 79 DVDIIFSPLPQGA------------------AGPVEEQFAKEGF-PVISNSPDH 113 (359)
T ss_dssp TCCEEEECCCTTT------------------HHHHHHHHHHTTC-EEEECSSTT
T ss_pred CCCEEEECCChHH------------------HHHHHHHHHHCCC-EEEEcCCCc
Confidence 8999999986321 1124555667787 778888763
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0039 Score=61.74 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHh-cCcCEEEEc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAA-RGVDCVFHV 85 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l-~~~D~ViHl 85 (478)
.+++|||+||+|-||...++.+...|++ |+++++++... .....-+...+ .|..+.+ .+.+.. .++|+||++
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~~~~~--~~~~~~Ga~~~-~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCH-VIGTCSSDEKS--AFLKSLGCDRP-INYKTEPVGTVLKQEYPEGVDVVYES 238 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCE-EEEEESSHHHH--HHHHHTTCSEE-EETTTSCHHHHHHHHCTTCEEEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEECCHHHH--HHHHHcCCcEE-EecCChhHHHHHHHhcCCCCCEEEEC
Confidence 4689999999999999999999999997 99998764321 11111222222 3444322 222222 368999999
Q ss_pred cc
Q 011770 86 AS 87 (478)
Q Consensus 86 Aa 87 (478)
++
T Consensus 239 ~g 240 (362)
T 2c0c_A 239 VG 240 (362)
T ss_dssp SC
T ss_pred CC
Confidence 87
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.03 Score=55.44 Aligned_cols=96 Identities=15% Similarity=0.011 Sum_probs=55.6
Q ss_pred CCeEEEEcCCChhHHHHHH-HHHHcCC--ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCL-ELVRRGA--YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~-~L~~~G~--~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+++|.|.||||++|+.|++ .|.++.+ .++..+.-+.... ....-.+.....-|..+.++ ++++|+||-|++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~--~~~~~~~~~~~v~~~~~~~~----~~~vDvvf~a~~ 77 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGG--KAPSFAKNETTLKDATSIDD----LKKCDVIITCQG 77 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTS--BCCTTCCSCCBCEETTCHHH----HHTCSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCC--CHHHcCCCceEEEeCCChhH----hcCCCEEEECCC
Confidence 4689999999999999999 5555542 2266664332211 11101111111224444443 468999999986
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEecc
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTY 130 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~ 130 (478)
.. -+......+.+.|++ ++|=.||.
T Consensus 78 ~~------------------~s~~~~~~~~~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 78 GD------------------YTNDVFPKLRAAGWNGYWIDAASS 103 (377)
T ss_dssp HH------------------HHHHHHHHHHHTTCCSEEEECSST
T ss_pred hH------------------HHHHHHHHHHHCCCCEEEEeCCcc
Confidence 21 123456666778875 56666663
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0029 Score=62.78 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC---CCcccccccCCCeEEEEecCCC--HHHHHHHhcCcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT---NSPWSHLLINHGVHCIQGDVVS--KIDVEKAARGVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~---~~~~~~~~~~~~v~~v~gDl~d--~~~l~~~l~~~D~ViH 84 (478)
++++|||+|| |-||..+++.+...|.+ |+++++++ ... .....-+...+ | .+ .+.+.+.-.++|+||+
T Consensus 180 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~--~~~~~~ga~~v--~-~~~~~~~~~~~~~~~d~vid 252 (366)
T 2cdc_A 180 NCRKVLVVGT-GPIGVLFTLLFRTYGLE-VWMANRREPTEVEQ--TVIEETKTNYY--N-SSNGYDKLKDSVGKFDVIID 252 (366)
T ss_dssp TTCEEEEESC-HHHHHHHHHHHHHHTCE-EEEEESSCCCHHHH--HHHHHHTCEEE--E-CTTCSHHHHHHHCCEEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEeCCccchHHH--HHHHHhCCcee--c-hHHHHHHHHHhCCCCCEEEE
Confidence 3789999999 99999999999999997 99999876 311 11112234444 5 44 1233331257999999
Q ss_pred cccC
Q 011770 85 VASY 88 (478)
Q Consensus 85 lAa~ 88 (478)
+++.
T Consensus 253 ~~g~ 256 (366)
T 2cdc_A 253 ATGA 256 (366)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9973
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0041 Score=58.39 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
..+ +++|.|+ |-.|++++..|.+.|..+|++.+|+..... ......... ..+++.+.++++|+||++...
T Consensus 107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~---~la~~~~~~-----~~~~~~~~~~~aDiVInatp~ 176 (253)
T 3u62_A 107 VKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAK---ALDFPVKIF-----SLDQLDEVVKKAKSLFNTTSV 176 (253)
T ss_dssp CCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHH---TCCSSCEEE-----EGGGHHHHHHTCSEEEECSST
T ss_pred CCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHH---HHHHHcccC-----CHHHHHhhhcCCCEEEECCCC
Confidence 456 8999995 999999999999999944999998754211 111122211 224466778899999998865
Q ss_pred CC
Q 011770 89 GM 90 (478)
Q Consensus 89 ~~ 90 (478)
++
T Consensus 177 gm 178 (253)
T 3u62_A 177 GM 178 (253)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0027 Score=61.39 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=48.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
..++++|.|.| .|.+|+.+++.|.+.|++ |++.||++.... .....++.. .++..++++++|+||-+..
T Consensus 6 ~~~~~~IgiIG-~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~--~~~~~g~~~-------~~~~~e~~~~aDvVi~~vp 74 (306)
T 3l6d_A 6 ESFEFDVSVIG-LGAMGTIMAQVLLKQGKR-VAIWNRSPGKAA--ALVAAGAHL-------CESVKAALSASPATIFVLL 74 (306)
T ss_dssp CCCSCSEEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSHHHHH--HHHHHTCEE-------CSSHHHHHHHSSEEEECCS
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHHCCCee-------cCCHHHHHhcCCEEEEEeC
Confidence 34567899998 799999999999999999 999998754211 111112221 1235566778999998764
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.019 Score=58.80 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=70.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcccCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVASYG 89 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa~~ 89 (478)
.++|+|.|| |-+|.+|++.|. ++++ |.++.++..........-++..++.||-+|.+-++++ ++++|+++-+-.-
T Consensus 235 ~~~v~I~Gg-G~ig~~lA~~L~-~~~~-v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~- 310 (461)
T 4g65_A 235 YRRIMIVGG-GNIGASLAKRLE-QTYS-VKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALTNE- 310 (461)
T ss_dssp CCEEEEECC-SHHHHHHHHHHT-TTSE-EEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECCSC-
T ss_pred ccEEEEEcc-hHHHHHHHHHhh-hcCc-eEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcccC-
Confidence 468999995 999999999984 5677 9999776543221222346788999999999988764 5688999866531
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEe
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~S 128 (478)
.++|+..+ -.|++.|++|.|-.-
T Consensus 311 ------------De~Ni~~~----llAk~~gv~kvIa~v 333 (461)
T 4g65_A 311 ------------DETNIMSA----MLAKRMGAKKVMVLI 333 (461)
T ss_dssp ------------HHHHHHHH----HHHHHTTCSEEEEEC
T ss_pred ------------cHHHHHHH----HHHHHcCCccccccc
Confidence 24666643 456789999877643
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.016 Score=55.19 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=48.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHH--HHhcCcCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE--KAARGVDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~--~~l~~~D~ViHl 85 (478)
.+.+++++|.|++|.+|+.++..|.++|.+ |++++++.. ++. +.++++|+||..
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt-Vtv~~~~T~-----------------------~l~l~~~~~~ADIVI~A 217 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENAT-VTIVHSGTS-----------------------TEDMIDYLRTADIVIAA 217 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTSC-----------------------HHHHHHHHHTCSEEEEC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCCC-----------------------CchhhhhhccCCEEEEC
Confidence 468899999999999999999999999998 999976432 234 788899999999
Q ss_pred ccC
Q 011770 86 ASY 88 (478)
Q Consensus 86 Aa~ 88 (478)
.+.
T Consensus 218 vg~ 220 (300)
T 4a26_A 218 MGQ 220 (300)
T ss_dssp SCC
T ss_pred CCC
Confidence 874
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=57.88 Aligned_cols=91 Identities=20% Similarity=0.115 Sum_probs=52.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEe-cCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY--QVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~-r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+||.|.||+|++|+.|++.|.+++++ .+..+. ++.... ........+.+. +. |++ . + ++|+||-|.+.
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~-~l~~~g~~i~v~--~~-~~~---~-~-~~DvV~~a~g~ 71 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGV-RLAFRGEEIPVE--PL-PEG---P-L-PVDLVLASAGG 71 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSC-EEEETTEEEEEE--EC-CSS---C-C-CCSEEEECSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCC-EEEEcCceEEEE--eC-Chh---h-c-CCCEEEECCCc
Confidence 47999999999999999999987775 122221 111110 000011122222 22 222 2 3 89999999862
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
. .+........+.|+ ++|-.|+.
T Consensus 72 ~------------------~s~~~a~~~~~~G~-~vId~s~~ 94 (331)
T 2yv3_A 72 G------------------ISRAKALVWAEGGA-LVVDNSSA 94 (331)
T ss_dssp H------------------HHHHHHHHHHHTTC-EEEECSSS
T ss_pred c------------------chHHHHHHHHHCCC-EEEECCCc
Confidence 1 12234556667787 78888876
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.019 Score=57.11 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEe--cCCCCcccc----ccc-------CCCeEEEEecCCCHHHHHHH
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD--LRTNSPWSH----LLI-------NHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~--r~~~~~~~~----~~~-------~~~v~~v~gDl~d~~~l~~~ 75 (478)
|+++||.|.||||++|..|++.|.+..+-++..+. +++....-. ... .....+...| +.+ .
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~--~~~----~ 90 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECK--PEG----N 90 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESS--SCT----T
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCc--hhh----h
Confidence 56679999999999999999988776433365542 322221100 000 0112222222 111 2
Q ss_pred hcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 76 ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 76 l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
++++|+||-|.+.. .+..+...+.+.|+ ++|=.|+..
T Consensus 91 ~~~~Dvvf~alp~~------------------~s~~~~~~~~~~G~-~VIDlSa~f 127 (381)
T 3hsk_A 91 FLECDVVFSGLDAD------------------VAGDIEKSFVEAGL-AVVSNAKNY 127 (381)
T ss_dssp GGGCSEEEECCCHH------------------HHHHHHHHHHHTTC-EEEECCSTT
T ss_pred cccCCEEEECCChh------------------HHHHHHHHHHhCCC-EEEEcCCcc
Confidence 46899999987521 12345666677787 677777753
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.022 Score=56.68 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHl 85 (478)
.++|+|+|+|+ |..|..+++.+.+.|++ |++++..+.... . .. .-+++..|..|.+.+.++++ ++|+|+..
T Consensus 9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~~-v~~~~~~~~~~~--~-~~-~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~ 81 (391)
T 1kjq_A 9 PAATRVMLLGS-GELGKEVAIECQRLGVE-VIAVDRYADAPA--M-HV-AHRSHVINMLDGDALRRVVELEKPHYIVPE 81 (391)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCE-EEEEESSTTCGG--G-GG-SSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCE-EEEEECCCCCch--h-hh-ccceEECCCCCHHHHHHHHHHcCCCEEEEC
Confidence 35689999986 79999999999999998 999987654321 1 11 12456788899988888775 89999864
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0022 Score=61.91 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=46.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEE--------ecCCCHHHHHHHhcCcCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQ--------GDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~--------gDl~d~~~l~~~l~~~D~V 82 (478)
||+|.|.|+ |.+|+.++..|.+.|++ |++++|++.... .....++.... .+..+.+++.++++++|+|
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~-V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGND-VTLIDQWPAHIE--AIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLI 78 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCHHHHH--HHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEE
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCc-EEEEECCHHHHH--HHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEE
Confidence 468999995 99999999999999998 999998653211 11111222211 1122333333344589999
Q ss_pred EEccc
Q 011770 83 FHVAS 87 (478)
Q Consensus 83 iHlAa 87 (478)
|-+..
T Consensus 79 i~~v~ 83 (316)
T 2ew2_A 79 IALTK 83 (316)
T ss_dssp EECSC
T ss_pred EEEec
Confidence 98763
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.027 Score=55.48 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c---------------------cccCC--CeEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H---------------------LLINH--GVHCI 62 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~---------------------~~~~~--~v~~v 62 (478)
.++..+|+|.|+ |-+|+.++..|...|..+++++|...-.... . ....+ .++.+
T Consensus 115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 193 (353)
T 3h5n_A 115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEI 193 (353)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEe
Confidence 456789999996 8899999999999999779999875421100 0 00112 35667
Q ss_pred EecCCCHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 63 QGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 63 ~gDl~d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
..++.+..++.+ ++++|+||.+..- . . ..-..+-++|.+.++ .+|+.+..
T Consensus 194 ~~~i~~~~~~~~-~~~~DlVvd~~Dn--~-------~-------~~r~~ln~~c~~~~~-p~i~~~~~ 243 (353)
T 3h5n_A 194 ALNINDYTDLHK-VPEADIWVVSADH--P-------F-------NLINWVNKYCVRANQ-PYINAGYV 243 (353)
T ss_dssp ECCCCSGGGGGG-SCCCSEEEECCCC--S-------T-------THHHHHHHHHHHTTC-CEEEEEEE
T ss_pred ecccCchhhhhH-hccCCEEEEecCC--h-------H-------HHHHHHHHHHHHhCC-CEEEEEEe
Confidence 777777665666 8899999997631 0 0 011235578999986 67776543
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.022 Score=48.05 Aligned_cols=87 Identities=18% Similarity=0.346 Sum_probs=56.7
Q ss_pred CCCCeEEEEcCC---ChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 9 IEGKTFLVTGGL---GHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGat---GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
.+.++|.|.|+| |-+|..+++.|++.|++ |+.++.+.. .. .++..+ .++.++.+++|+|+-+
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~-V~~vnp~~~----~i---~G~~~~-------~s~~el~~~vDlvii~ 76 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNPNYD----EI---EGLKCY-------RSVRELPKDVDVIVFV 76 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTCS----EE---TTEECB-------SSGGGSCTTCCEEEEC
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCE-EEEeCCCCC----eE---CCeeec-------CCHHHhCCCCCEEEEE
Confidence 346789999987 99999999999999998 888765432 11 233221 2233444578988876
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEe
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~S 128 (478)
.. . .....+++.|.+.|++.++..+
T Consensus 77 vp-----~-------------~~v~~v~~~~~~~g~~~i~~~~ 101 (138)
T 1y81_A 77 VP-----P-------------KVGLQVAKEAVEAGFKKLWFQP 101 (138)
T ss_dssp SC-----H-------------HHHHHHHHHHHHTTCCEEEECT
T ss_pred eC-----H-------------HHHHHHHHHHHHcCCCEEEEcC
Confidence 53 1 1233466777788987765544
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.038 Score=53.19 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=68.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
+..+++||.|+|| |.+|+.++..|+.+|. + |+.+|+........ ....++++. .. | . +.++++|
T Consensus 10 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~e-v~L~Di~~~~~g~a~dl~~~~~~~i~~-t~---d---~-~~l~~aD 79 (303)
T 2i6t_A 10 ENKTVNKITVVGG-GELGIACTLAISAKGIADR-LVLLDLSEGTKGATMDLEIFNLPNVEI-SK---D---L-SASAHSK 79 (303)
T ss_dssp ----CCEEEEECC-SHHHHHHHHHHHHHTCCSE-EEEECCC-----CHHHHHHHTCTTEEE-ES---C---G-GGGTTCS
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCE-EEEEcCCcchHHHHHHHhhhcCCCeEE-eC---C---H-HHHCCCC
Confidence 3445689999995 9999999999999998 7 99999876411000 011123333 12 3 2 4588999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeE
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~ 124 (478)
+||-+|+...++ ....+....|+.-.+.+.+.+.+...+-+
T Consensus 80 ~Vi~aag~~~pG---~tR~dl~~~n~~i~~~i~~~i~~~~p~a~ 120 (303)
T 2i6t_A 80 VVIFTVNSLGSS---QSYLDVVQSNVDMFRALVPALGHYSQHSV 120 (303)
T ss_dssp EEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred EEEEcCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 999999874222 23456678899999999999998764433
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.015 Score=56.56 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=66.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC--ceEEEEecCCCCcccccc--c-----CCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA--YQVRAFDLRTNSPWSHLL--I-----NHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~--~~V~~l~r~~~~~~~~~~--~-----~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
|+|.|+|+ |.+|+.++..|.+.|+ + |+++|+++........ . ....... . +|. ++++++|+|
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~-~--~d~----~~~~~aDvV 71 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFARE-MVLIDVDKKRAEGDALDLIHGTPFTRRANIY-A--GDY----ADLKGSDVV 71 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE-EEEECSSHHHHHHHHHHHHHHGGGSCCCEEE-E--CCG----GGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCe-EEEEeCChHHHHHHHHHHHhhhhhcCCcEEE-e--CCH----HHhCCCCEE
Confidence 47999997 9999999999999998 7 9999987432111000 0 0112222 2 232 357899999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeE
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~ 124 (478)
|-+++..... .....+....|+.....+++.+.+...+.+
T Consensus 72 iiav~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ 111 (319)
T 1a5z_A 72 IVAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSI 111 (319)
T ss_dssp EECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred EEccCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 9998753321 112345567888888999999888754433
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0073 Score=59.38 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=48.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHh--cCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAA--RGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l--~~~D~ViHlA 86 (478)
++|+|+||+|-||...++.+...|.+ |+++++++.... ....-+... ..|..+.+ .+.+.. .++|+||+++
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~-Vi~~~~~~~~~~--~~~~~Ga~~-~~~~~~~~~~~~v~~~~~~~g~D~vid~~ 241 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFR-PIVTVRRDEQIA--LLKDIGAAH-VLNEKAPDFEATLREVMKAEQPRIFLDAV 241 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCE-EEEEESCGGGHH--HHHHHTCSE-EEETTSTTHHHHHHHHHHHHCCCEEEESS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHHcCCCE-EEECCcHHHHHHHHHHhcCCCCcEEEECC
Confidence 68999999999999999999999997 999987654221 111112222 23444432 233333 3799999998
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
+
T Consensus 242 g 242 (349)
T 3pi7_A 242 T 242 (349)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.017 Score=54.67 Aligned_cols=57 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++++|.|++|.+|+.++..|.++|.+ |+++.++.. ++.+.++.+|+||...+
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt-Vtv~hs~t~-----------------------~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKAT-VTTCHRFTT-----------------------DLKSHTTKADILIVAVG 213 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTCS-----------------------SHHHHHTTCSEEEECCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCCch-----------------------hHHHhcccCCEEEECCC
Confidence 468899999999999999999999999998 998865321 36678899999999887
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 214 ~ 214 (285)
T 3l07_A 214 K 214 (285)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.016 Score=56.04 Aligned_cols=80 Identities=20% Similarity=0.111 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCC--eEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG--VHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~--v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
.+.+++++|.|++.-+|+.+++.|...|.+ |++++|+............. ........++.+++.+.++++|+||-+
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAt-Vtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsA 252 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGAT-VYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 252 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCE-EEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCE-EEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEEC
Confidence 578899999999889999999999999998 99998763321111100000 111111113457899999999999998
Q ss_pred ccC
Q 011770 86 ASY 88 (478)
Q Consensus 86 Aa~ 88 (478)
.+.
T Consensus 253 tg~ 255 (320)
T 1edz_A 253 VPS 255 (320)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.012 Score=53.48 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
|....+++|.|.| +|.+|+.++..|.+.|++ |++.+|++. .++++|+||-+
T Consensus 14 ~~~~~~~~I~iiG-~G~mG~~la~~l~~~g~~-V~~~~~~~~---------------------------~~~~aD~vi~a 64 (209)
T 2raf_A 14 NLYFQGMEITIFG-KGNMGQAIGHNFEIAGHE-VTYYGSKDQ---------------------------ATTLGEIVIMA 64 (209)
T ss_dssp ------CEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECTTCC---------------------------CSSCCSEEEEC
T ss_pred ccccCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEcCCHH---------------------------HhccCCEEEEc
Confidence 3446778999999 799999999999999998 999987532 45788999987
Q ss_pred c
Q 011770 86 A 86 (478)
Q Consensus 86 A 86 (478)
.
T Consensus 65 v 65 (209)
T 2raf_A 65 V 65 (209)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0027 Score=64.68 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=30.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|+|.|.| +|++|..++..|.+.|++ |+++|+++.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~-V~~~d~~~~ 34 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHE-VIGVDVSST 34 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCE-EEEECSCHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEECCHH
Confidence 4799998 799999999999999998 999998654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0052 Score=59.07 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=47.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+++|.|.| .|.+|+.+++.|.+.|++ |++.||++.... .....+++. .++++++++ +|+||-+..
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~--~~~~~g~~~-------~~~~~~~~~-aDvvi~~vp 79 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGG-VTVYDIRIEAMT--PLAEAGATL-------ADSVADVAA-ADLIHITVL 79 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTC-EEEECSSTTTSH--HHHHTTCEE-------CSSHHHHTT-SSEEEECCS
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCe-EEEEeCCHHHHH--HHHHCCCEE-------cCCHHHHHh-CCEEEEECC
Confidence 46899998 799999999999999999 999998876431 112223332 124566777 999998763
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.017 Score=58.93 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|+|.|.| +|++|..++..|.+.|++ |+++|+++.
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~-V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGAN-VRCIDTDRN 36 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCE-EEEEECCHH
Confidence 6899998 599999999999999998 999998754
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.016 Score=54.83 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++++|.|++|.+|+.++..|..+|.+ |+++.++.. ++++.++.+|+||...+
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAt-Vtv~hs~T~-----------------------~L~~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCT-VTVTHRFTR-----------------------DLADHVSRADLVVVAAG 213 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCE-EEEECTTCS-----------------------CHHHHHHTCSEEEECCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCCCc-----------------------CHHHHhccCCEEEECCC
Confidence 468999999999999999999999999998 999865321 35677889999999887
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 214 ~ 214 (286)
T 4a5o_A 214 K 214 (286)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.029 Score=54.33 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=52.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+|+|.|.| .|-||+.+++.|...|++ |++.+|++... +++....+ .++++++++++|+|+-+..
T Consensus 136 ~l~g~tvGIiG-~G~IG~~vA~~l~~~G~~-V~~~dr~~~~~-------~~~~~~~~----~~~l~ell~~aDiV~l~~P 202 (315)
T 3pp8_A 136 TREEFSVGIMG-AGVLGAKVAESLQAWGFP-LRCWSRSRKSW-------PGVESYVG----REELRAFLNQTRVLINLLP 202 (315)
T ss_dssp CSTTCCEEEEC-CSHHHHHHHHHHHTTTCC-EEEEESSCCCC-------TTCEEEES----HHHHHHHHHTCSEEEECCC
T ss_pred CcCCCEEEEEe-eCHHHHHHHHHHHHCCCE-EEEEcCCchhh-------hhhhhhcc----cCCHHHHHhhCCEEEEecC
Confidence 46789999999 699999999999999999 99999876521 22222221 3678899999999987764
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0062 Score=52.69 Aligned_cols=67 Identities=21% Similarity=0.097 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHcCCceEEEEecCCCCccc-----cccc--CCCeEEEEecCCCH--HHHHHHhc------CcCEEEEc
Q 011770 21 GHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HLLI--NHGVHCIQGDVVSK--IDVEKAAR------GVDCVFHV 85 (478)
Q Consensus 21 GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~~~~--~~~v~~v~gDl~d~--~~l~~~l~------~~D~ViHl 85 (478)
|.++...++.|.+.|++ |++..|....... .... ......+.+|++++ +++.++++ +-|++|||
T Consensus 26 ~~p~~a~a~~La~~Ga~-vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVnn 104 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVD-VVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHC 104 (157)
T ss_dssp BCCCHHHHHHHHHTTCC-EEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEEC
T ss_pred CCCCHHHHHHHHHcCCC-EEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 67899999999999999 8877665442210 1111 22355678899998 88777654 33999999
Q ss_pred ccC
Q 011770 86 ASY 88 (478)
Q Consensus 86 Aa~ 88 (478)
||.
T Consensus 105 Agg 107 (157)
T 3gxh_A 105 LAN 107 (157)
T ss_dssp SBS
T ss_pred CCC
Confidence 984
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.011 Score=54.31 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=52.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
.+++++|||.|| |-+|...++.|++.|.+ |++++..............+++++..+..+. .++++|.||=
T Consensus 28 ~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~-VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~-----dL~~adLVIa 97 (223)
T 3dfz_A 28 DLKGRSVLVVGG-GTIATRRIKGFLQEGAA-ITVVAPTVSAEINEWEAKGQLRVKRKKVGEE-----DLLNVFFIVV 97 (223)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHGGGCCC-EEEECSSCCHHHHHHHHTTSCEEECSCCCGG-----GSSSCSEEEE
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHcCCcEEEECCCCHh-----HhCCCCEEEE
Confidence 467899999995 89999999999999999 9999865442222222345688887766532 3578999983
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.033 Score=54.89 Aligned_cols=70 Identities=19% Similarity=0.047 Sum_probs=51.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecC-CCHHHHHHHhcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDV-VSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl-~d~~~l~~~l~~~D~ViHlA 86 (478)
||||+|+| +|..|..++..+.+.|++ |+++|.++..... ... -+++..|. .|.+.+....+++|+|+-..
T Consensus 1 MK~I~ilG-gg~~g~~~~~~Ak~~G~~-vv~vd~~~~~~~~---~~a-D~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 71 (363)
T 4ffl_A 1 MKTICLVG-GKLQGFEAAYLSKKAGMK-VVLVDKNPQALIR---NYA-DEFYCFDVIKEPEKLLELSKRVDAVLPVN 71 (363)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESCTTCTTT---TTS-SEEEECCTTTCHHHHHHHHTSSSEEEECC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEeCCCCChhH---hhC-CEEEECCCCcCHHHHHHHhcCCCEEEECC
Confidence 68999999 589999999999999999 9999876543211 111 13455565 46777777788999887543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0073 Score=59.85 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecC------------------CCHH
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDV------------------VSKI 70 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl------------------~d~~ 70 (478)
..+.+|+|+|+ |-+|...++.+...|.+ |+++|+++.... ....-+.+++..|+ .+.+
T Consensus 182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~-V~v~D~~~~~l~--~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~ 257 (381)
T 3p2y_A 182 VKPASALVLGV-GVAGLQALATAKRLGAK-TTGYDVRPEVAE--QVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQ 257 (381)
T ss_dssp ECCCEEEEESC-SHHHHHHHHHHHHHTCE-EEEECSSGGGHH--HHHHTTCEECCCC-------------CHHHHHHHHH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHHcCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence 35689999996 99999999999999998 999998865321 11122444433221 1245
Q ss_pred HHHHHhcCcCEEEEcccC
Q 011770 71 DVEKAARGVDCVFHVASY 88 (478)
Q Consensus 71 ~l~~~l~~~D~ViHlAa~ 88 (478)
.+.++++++|+||.++..
T Consensus 258 ~l~e~l~~aDIVI~tv~i 275 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALV 275 (381)
T ss_dssp HHHHHHTTCSEEEECCCC
T ss_pred HHHHHHhcCCEEEECCCC
Confidence 678889999999998753
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.011 Score=56.30 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=46.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
||+|.|.|+||.+|+.+++.|.+.|++ |++.+|++.... .....++. ..+ ..++++++|+||-+..
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~-V~~~~r~~~~~~--~~~~~g~~-----~~~---~~~~~~~aDvVi~av~ 76 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHH-LAAIEIAPEGRD--RLQGMGIP-----LTD---GDGWIDEADVVVLALP 76 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSE-EEEECCSHHHHH--HHHHTTCC-----CCC---SSGGGGTCSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCHHHHH--HHHhcCCC-----cCC---HHHHhcCCCEEEEcCC
Confidence 579999999999999999999999998 999988654211 11112221 222 2346678999998763
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.016 Score=57.84 Aligned_cols=75 Identities=25% Similarity=0.157 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCC---------------------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV--------------------- 67 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~--------------------- 67 (478)
+.+++|+|+|+ |-+|...++.+...|.+ |+++|+++..... ...-+.+++..|..
T Consensus 170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~-V~~~d~~~~~~~~--~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~ 245 (384)
T 1l7d_A 170 VPPARVLVFGV-GVAGLQAIATAKRLGAV-VMATDVRAATKEQ--VESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 245 (384)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCSTTHHH--HHHTTCEECCC-----------------------C
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH--HHHcCCeEEeecccccccccccccchhhcCHHHHh
Confidence 46789999995 99999999999999998 9999987653211 11123333211211
Q ss_pred -CHHHHHHHhcCcCEEEEccc
Q 011770 68 -SKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 68 -d~~~l~~~l~~~D~ViHlAa 87 (478)
+.+.+.+.++++|+||+++.
T Consensus 246 ~~~~~l~~~~~~aDvVi~~~~ 266 (384)
T 1l7d_A 246 KQAEAVLKELVKTDIAITTAL 266 (384)
T ss_dssp CHHHHHHHHHTTCSEEEECCC
T ss_pred hhHHHHHHHhCCCCEEEECCc
Confidence 12347788889999999884
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0082 Score=58.06 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=49.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
...||+|.|.| +|.+|+.+++.|.+.|++ |++.||++.... .....+++. .++..++++++|+||-+..
T Consensus 18 ~~~m~~I~iIG-~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~--~l~~~g~~~-------~~~~~~~~~~aDvvi~~vp 86 (310)
T 3doj_A 18 GSHMMEVGFLG-LGIMGKAMSMNLLKNGFK-VTVWNRTLSKCD--ELVEHGASV-------CESPAEVIKKCKYTIAMLS 86 (310)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSGGGGH--HHHHTTCEE-------CSSHHHHHHHCSEEEECCS
T ss_pred cccCCEEEEEC-ccHHHHHHHHHHHHCCCe-EEEEeCCHHHHH--HHHHCCCeE-------cCCHHHHHHhCCEEEEEcC
Confidence 34568999998 799999999999999998 999998765321 111223322 1234556677899998763
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0095 Score=57.92 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.++|+|.|.| .|.+|+.+++.|.+.|++ |++.||++... ......+++.. .++.++++++|+||-+..
T Consensus 29 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~--~~l~~~g~~~~-------~~~~e~~~~aDvVi~~vp 96 (320)
T 4dll_A 29 PYARKITFLG-TGSMGLPMARRLCEAGYA-LQVWNRTPARA--ASLAALGATIH-------EQARAAARDADIVVSMLE 96 (320)
T ss_dssp CCCSEEEEEC-CTTTHHHHHHHHHHTTCE-EEEECSCHHHH--HHHHTTTCEEE-------SSHHHHHTTCSEEEECCS
T ss_pred cCCCEEEEEC-ccHHHHHHHHHHHhCCCe-EEEEcCCHHHH--HHHHHCCCEee-------CCHHHHHhcCCEEEEECC
Confidence 4567999998 699999999999999998 99999875421 11122233321 245667889999998763
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.038 Score=53.74 Aligned_cols=73 Identities=18% Similarity=0.076 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCChhHH-HHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh-cCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGS-ALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA-RGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~-~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l-~~~D~ViHlAa 87 (478)
.+|+|.|.|. |-.|. .+++.|.++|++ |.+.|++............++++..+. +++. +. .++|.||...|
T Consensus 3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~~-V~~~D~~~~~~~~~~L~~~gi~v~~g~--~~~~---l~~~~~d~vV~Spg 75 (326)
T 3eag_A 3 AMKHIHIIGI-GGTFMGGLAAIAKEAGFE-VSGCDAKMYPPMSTQLEALGIDVYEGF--DAAQ---LDEFKADVYVIGNV 75 (326)
T ss_dssp CCCEEEEESC-CSHHHHHHHHHHHHTTCE-EEEEESSCCTTHHHHHHHTTCEEEESC--CGGG---GGSCCCSEEEECTT
T ss_pred CCcEEEEEEE-CHHHHHHHHHHHHhCCCE-EEEEcCCCCcHHHHHHHhCCCEEECCC--CHHH---cCCCCCCEEEECCC
Confidence 4679999996 66777 599999999999 999998765332223444578877662 3332 33 47899999887
Q ss_pred CC
Q 011770 88 YG 89 (478)
Q Consensus 88 ~~ 89 (478)
+.
T Consensus 76 i~ 77 (326)
T 3eag_A 76 AK 77 (326)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.015 Score=58.09 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEec----------------CCC----
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGD----------------VVS---- 68 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gD----------------l~d---- 68 (478)
..+.+|+|+|+ |-+|...++.+...|.+ |+++|+++.... ....-+.+++..+ +++
T Consensus 188 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~-V~v~D~~~~~l~--~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~ 263 (405)
T 4dio_A 188 VPAAKIFVMGA-GVAGLQAIATARRLGAV-VSATDVRPAAKE--QVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQV 263 (405)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSTTHHH--HHHHTTCEECCCCC-----------------CHHHH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCE-EEEEcCCHHHHH--HHHHcCCceeecccccccccccccchhhhcchhhhh
Confidence 35679999996 99999999999999998 999998875311 1111233333222 222
Q ss_pred --HHHHHHHhcCcCEEEEcccC
Q 011770 69 --KIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 69 --~~~l~~~l~~~D~ViHlAa~ 88 (478)
.+.+.++++++|+||.++..
T Consensus 264 ~~~~~l~e~l~~aDVVI~tvli 285 (405)
T 4dio_A 264 KQAALVAEHIAKQDIVITTALI 285 (405)
T ss_dssp HHHHHHHHHHHTCSEEEECCCC
T ss_pred hhHhHHHHHhcCCCEEEECCcC
Confidence 35788899999999998764
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.016 Score=54.49 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=47.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+.+++++|.|+++-+|+.++..|.++|.+ |++++++. .++++.++++|+||...+.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAt-Vtv~~~~t-----------------------~~L~~~~~~ADIVI~Avg~ 203 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYT-VSVCHSKT-----------------------KDIGSMTRSSKIVVVAVGR 203 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTC-----------------------SCHHHHHHHSSEEEECSSC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCe-EEEEeCCc-----------------------ccHHHhhccCCEEEECCCC
Confidence 67899999999999999999999999998 99986542 2356778889999998874
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.011 Score=56.76 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=52.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|+|.|+ |-+|+.+++.|...|.+ |++.+|+.... ......+++.+ +.+++.++++++|+|+.+..
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~-V~~~d~~~~~~--~~~~~~g~~~~-----~~~~l~~~l~~aDvVi~~~p 224 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGAN-VKVGARSSAHL--ARITEMGLVPF-----HTDELKEHVKDIDICINTIP 224 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSHHHH--HHHHHTTCEEE-----EGGGHHHHSTTCSEEEECCS
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCCE-EEEEECCHHHH--HHHHHCCCeEE-----chhhHHHHhhCCCEEEECCC
Confidence 467899999995 99999999999999997 99999875421 11111233332 12457778899999999886
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 225 ~ 225 (300)
T 2rir_A 225 S 225 (300)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.02 Score=56.13 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=50.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|.|.| .|-||+.+++.|...|.+ |++.|++.... ....+++. +++++++++|+|+-+..
T Consensus 145 ~l~gktvgIiG-lG~IG~~vA~~l~~~G~~-V~~~d~~~~~~-----~~~~~~~~--------~l~ell~~aDvV~l~~P 209 (343)
T 2yq5_A 145 EIYNLTVGLIG-VGHIGSAVAEIFSAMGAK-VIAYDVAYNPE-----FEPFLTYT--------DFDTVLKEADIVSLHTP 209 (343)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSCCGG-----GTTTCEEC--------CHHHHHHHCSEEEECCC
T ss_pred ccCCCeEEEEe-cCHHHHHHHHHHhhCCCE-EEEECCChhhh-----hhcccccc--------CHHHHHhcCCEEEEcCC
Confidence 45789999999 799999999999999998 99999876521 11223321 46677889999988775
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 210 l 210 (343)
T 2yq5_A 210 L 210 (343)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0068 Score=59.51 Aligned_cols=73 Identities=26% Similarity=0.321 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC-HHHHHHHhc--CcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS-KIDVEKAAR--GVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d-~~~l~~~l~--~~D~ViHlA 86 (478)
.+++|||+||+|-||...++.+...|.+ |+++ +++... .....-+...+. +-.+ .+.+.+... ++|+||+++
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~-Vi~~-~~~~~~--~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~vid~~ 224 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGAR-VFAT-ARGSDL--EYVRDLGATPID-ASREPEDYAAEHTAGQGFDLVYDTL 224 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEE-ECHHHH--HHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEEEEESS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEE-eCHHHH--HHHHHcCCCEec-cCCCHHHHHHHHhcCCCceEEEECC
Confidence 5689999999999999999999999998 9988 543311 111222344322 2222 223333333 699999998
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
+
T Consensus 225 g 225 (343)
T 3gaz_A 225 G 225 (343)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0019 Score=61.49 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=47.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc---cCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL---INHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~---~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
..++++++|+|+ |-+|+.++..|.+.|.+ |++.+|+......... ....+. ..|+ +++.+ .++|+||+
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~-v~v~~R~~~~a~~l~~~~~~~~~~~--~~~~---~~~~~--~~~DivIn 186 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQQN-IVLANRTFSKTKELAERFQPYGNIQ--AVSM---DSIPL--QTYDLVIN 186 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGSCEE--EEEG---GGCCC--SCCSEEEE
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHccccCCeE--EeeH---HHhcc--CCCCEEEE
Confidence 356789999997 78999999999999977 9999987542111100 001222 2333 11110 38999999
Q ss_pred cccCCC
Q 011770 85 VASYGM 90 (478)
Q Consensus 85 lAa~~~ 90 (478)
+++.+.
T Consensus 187 ~t~~~~ 192 (272)
T 1p77_A 187 ATSAGL 192 (272)
T ss_dssp CCCC--
T ss_pred CCCCCC
Confidence 998654
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.013 Score=56.26 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|+|.| .|-+|+.+++.|...|.+ |++.+|+..... .....+++.+ +.+++.++++++|+|+.+..
T Consensus 152 ~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~-V~~~dr~~~~~~--~~~~~g~~~~-----~~~~l~~~l~~aDvVi~~~p 222 (293)
T 3d4o_A 152 TIHGANVAVLG-LGRVGMSVARKFAALGAK-VKVGARESDLLA--RIAEMGMEPF-----HISKAAQELRDVDVCINTIP 222 (293)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESSHHHHH--HHHHTTSEEE-----EGGGHHHHTTTCSEEEECCS
T ss_pred CCCCCEEEEEe-eCHHHHHHHHHHHhCCCE-EEEEECCHHHHH--HHHHCCCeec-----ChhhHHHHhcCCCEEEECCC
Confidence 46789999999 699999999999999997 999998754211 1112234432 22457778899999999875
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 223 ~ 223 (293)
T 3d4o_A 223 A 223 (293)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0053 Score=58.62 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
++++|.|.| +|.+|+.++..|.+.|++ |++.|+++.
T Consensus 3 ~~~kV~VIG-aG~mG~~iA~~la~~G~~-V~l~d~~~~ 38 (283)
T 4e12_A 3 GITNVTVLG-TGVLGSQIAFQTAFHGFA-VTAYDINTD 38 (283)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSHH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCe-EEEEeCCHH
Confidence 357999998 599999999999999998 999998754
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.029 Score=56.81 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa 87 (478)
++|+|||+|+ |.+|..+++.+.+.|++ |++++..+.... ... .-+.+..|..|.+.+.++++ ++|+|+..-.
T Consensus 18 ~~~~ili~g~-g~~g~~~~~a~~~~G~~-v~~v~~~~~~~~--~~~--ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e 91 (433)
T 2dwc_A 18 SAQKILLLGS-GELGKEIAIEAQRLGVE-VVAVDRYANAPA--MQV--AHRSYVGNMMDKDFLWSVVEREKPDAIIPEIE 91 (433)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHHTTCE-EEEEESSTTCHH--HHH--SSEEEESCTTCHHHHHHHHHHHCCSEEEECSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEECCCCChh--hhh--cceEEECCCCCHHHHHHHHHHcCCCEEEECcc
Confidence 3579999986 89999999999999999 999987654321 111 12356788999998888875 8999987543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0095 Score=58.34 Aligned_cols=73 Identities=18% Similarity=0.123 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l~~~D~ViHlA 86 (478)
.+++|||+|| |-+|...++.+...|.+ |+++++++.... ....-+... ..|..+.+ .+.+...++|+||+++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~-Vi~~~~~~~~~~--~~~~lGa~~-~~d~~~~~~~~~~~~~~~~~d~vid~~ 238 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLN-VVAVDIGDEKLE--LAKELGADL-VVNPLKEDAAKFMKEKVGGVHAAVVTA 238 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCE-EEEECSCHHHHH--HHHHTTCSE-EECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCE-EEEEeCCHHHHH--HHHHCCCCE-EecCCCccHHHHHHHHhCCCCEEEECC
Confidence 4679999999 66999999999999997 999987644211 111123332 24665432 3333336899999998
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
+
T Consensus 239 g 239 (339)
T 1rjw_A 239 V 239 (339)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.011 Score=57.24 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+++|.|.| +|.+|+.++..|.+.|++ |++.+|++.... .....++.. ..+ ..++++++|+||-+..
T Consensus 29 ~~~~I~iIG-~G~mG~~~a~~l~~~g~~-V~~~~~~~~~~~--~~~~~g~~~----~~~---~~~~~~~~DvVi~av~ 95 (316)
T 2uyy_A 29 TDKKIGFLG-LGLMGSGIVSNLLKMGHT-VTVWNRTAEKCD--LFIQEGARL----GRT---PAEVVSTCDITFACVS 95 (316)
T ss_dssp CSSCEEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSGGGGH--HHHHTTCEE----CSC---HHHHHHHCSEEEECCS
T ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCE-EEEEeCCHHHHH--HHHHcCCEE----cCC---HHHHHhcCCEEEEeCC
Confidence 347899999 699999999999999998 999988754321 111123322 112 3445668899998763
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.013 Score=57.81 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=46.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+++|+|.|.| .|.+|+.+++.|.+.|++ |++.||++... ......++. ...+.+++.+..+.+|+||-+..
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~~-V~v~dr~~~~~--~~l~~~g~~----~~~s~~e~~~~a~~~DvVi~~vp 90 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKGGHE-CVVYDLNVNAV--QALEREGIA----GARSIEEFCAKLVKPRVVWLMVP 90 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHHHH--HHHHTTTCB----CCSSHHHHHHHSCSSCEEEECSC
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhCCCE-EEEEeCCHHHH--HHHHHCCCE----EeCCHHHHHhcCCCCCEEEEeCC
Confidence 4568999998 799999999999999998 99999875421 111122322 12344444433344599998764
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.078 Score=55.64 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=66.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcccCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVASYGM 90 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa~~~ 90 (478)
++++|.|+ |-+|+++++.|.+.|++ |+++|.++.... .. ..++.||-+|.+.++++ ++++|.||=+.+-
T Consensus 349 ~~viIiG~-G~~G~~la~~L~~~g~~-v~vid~d~~~~~----~~--~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~-- 418 (565)
T 4gx0_A 349 ELIFIIGH-GRIGCAAAAFLDRKPVP-FILIDRQESPVC----ND--HVVVYGDATVGQTLRQAGIDRASGIIVTTND-- 418 (565)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCC-EEEEESSCCSSC----CS--SCEEESCSSSSTHHHHHTTTSCSEEEECCSC--
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCC-EEEEECChHHHh----hc--CCEEEeCCCCHHHHHhcCccccCEEEEECCC--
Confidence 78999996 99999999999999999 999998766321 11 27899999999998875 3578998876541
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEE
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLV 125 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V 125 (478)
.+.|+.. ...|++.+.+ ++|
T Consensus 419 -----------d~~ni~~----~~~ak~l~~~~~ii 439 (565)
T 4gx0_A 419 -----------DSTNIFL----TLACRHLHSHIRIV 439 (565)
T ss_dssp -----------HHHHHHH----HHHHHHHCSSSEEE
T ss_pred -----------chHHHHH----HHHHHHHCCCCEEE
Confidence 1345553 4566777765 444
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0043 Score=56.90 Aligned_cols=68 Identities=22% Similarity=0.142 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEE-EecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRA-FDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~-l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|+||+|.|.| +|.+|+.+++.|.+.|++ |++ .+|++..... .....++.... .+ .+.++++|+||-+.
T Consensus 21 m~mmkI~IIG-~G~mG~~la~~l~~~g~~-V~~v~~r~~~~~~~-l~~~~g~~~~~---~~----~~~~~~aDvVilav 89 (220)
T 4huj_A 21 QSMTTYAIIG-AGAIGSALAERFTAAQIP-AIIANSRGPASLSS-VTDRFGASVKA---VE----LKDALQADVVILAV 89 (220)
T ss_dssp GGSCCEEEEE-CHHHHHHHHHHHHHTTCC-EEEECTTCGGGGHH-HHHHHTTTEEE---CC----HHHHTTSSEEEEES
T ss_pred hcCCEEEEEC-CCHHHHHHHHHHHhCCCE-EEEEECCCHHHHHH-HHHHhCCCccc---Ch----HHHHhcCCEEEEeC
Confidence 4467999999 899999999999999998 998 7776542211 11111222211 12 22367899999876
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0096 Score=55.48 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++.+++|.|.| +|.+|+.+++.|.+.|++ |++.+|++.
T Consensus 15 ~~~~~~kIgiIG-~G~mG~alA~~L~~~G~~-V~~~~r~~~ 53 (245)
T 3dtt_A 15 LYFQGMKIAVLG-TGTVGRTMAGALADLGHE-VTIGTRDPK 53 (245)
T ss_dssp ----CCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESCHH
T ss_pred cccCCCeEEEEC-CCHHHHHHHHHHHHCCCE-EEEEeCChh
Confidence 356788999997 899999999999999998 999998754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.011 Score=58.40 Aligned_cols=74 Identities=20% Similarity=0.084 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCH-HHHHHHhcCcCEEEEcccC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK-IDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~-~~l~~~l~~~D~ViHlAa~ 88 (478)
.+.+|||+|+ |-+|...++.+...|.+ |+++++++..... ...-+...+ .|..+. +..+++..++|+||++++.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~-Vi~~~~~~~~~~~--~~~lGa~~v-~~~~~~~~~~~~~~~~~D~vid~~g~ 253 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAE-TYVISRSSRKRED--AMKMGADHY-IATLEEGDWGEKYFDTFDLIVVCASS 253 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCE-EEEEESSSTTHHH--HHHHTCSEE-EEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEcCCHHHHHH--HHHcCCCEE-EcCcCchHHHHHhhcCCCEEEECCCC
Confidence 4689999999 99999999988889998 9999987653211 111122221 344443 3333333589999999974
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.035 Score=55.03 Aligned_cols=74 Identities=22% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh--cCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA--RGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l--~~~D~ViHlAa 87 (478)
.+.+|||+||+|-||...++.+...|.+ |++.++ +. .. .....-+...+ .|..+.+..+++. .++|+||++++
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~-Vi~~~~-~~-~~-~~~~~lGa~~v-~~~~~~~~~~~~~~~~g~D~vid~~g 257 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAH-VTAVCS-QD-AS-ELVRKLGADDV-IDYKSGSVEEQLKSLKPFDFILDNVG 257 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC-GG-GH-HHHHHTTCSEE-EETTSSCHHHHHHTSCCBSEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEeC-hH-HH-HHHHHcCCCEE-EECCchHHHHHHhhcCCCCEEEECCC
Confidence 5689999999999999999999999997 998873 22 11 11122233322 3555433333332 47999999997
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 258 ~ 258 (375)
T 2vn8_A 258 G 258 (375)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0075 Score=58.55 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+|+|+||+|-+|...++.+...|.+ |+++++... . .....-+... ..|..+.+.+.+.++++|+||++++
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~-vi~~~~~~~--~-~~~~~lGa~~-~i~~~~~~~~~~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTT-VITTASKRN--H-AFLKALGAEQ-CINYHEEDFLLAISTPVDAVIDLVG 224 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEECHHH--H-HHHHHHTCSE-EEETTTSCHHHHCCSCEEEEEESSC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeccch--H-HHHHHcCCCE-EEeCCCcchhhhhccCCCEEEECCC
Confidence 5689999999999999999999999997 998874322 1 1111122222 2455555546677789999999987
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.082 Score=50.44 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEE-EEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVR-AFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~-~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlA 86 (478)
+.++|+|.|+||-.|+.+++.+.+.|++ ++ .++..... ....++..+ .+++++.+ ++|+++-+.
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g-----~~i~G~~vy-------~sl~el~~~~~~Dv~Ii~v 72 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGG-----MEVLGVPVY-------DTVKEAVAHHEVDASIIFV 72 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT-----CEETTEEEE-------SSHHHHHHHSCCSEEEECC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCC-----ceECCEEee-------CCHHHHhhcCCCCEEEEec
Confidence 3478999999999999999999999988 55 44322210 011233332 23445555 899999775
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
.. ..+..+++.|.+.|++.+|.+++
T Consensus 73 p~------------------~~~~~~~~ea~~~Gi~~vVi~t~ 97 (288)
T 1oi7_A 73 PA------------------PAAADAALEAAHAGIPLIVLITE 97 (288)
T ss_dssp CH------------------HHHHHHHHHHHHTTCSEEEECCS
T ss_pred CH------------------HHHHHHHHHHHHCCCCEEEEECC
Confidence 31 12445788899999976666554
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.046 Score=46.37 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=55.4
Q ss_pred CCeEEEEcCC---ChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGL---GHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGat---GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.++|.|.|++ |-+|..+++.|.+.|++ |+.++.... .-.++..+ .++.++.+.+|.++-+..
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~-v~~Vnp~~~-------~i~G~~~y-------~sl~~l~~~vDlvvi~vp 86 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYD-VYPVNPKYE-------EVLGRKCY-------PSVLDIPDKIEVVDLFVK 86 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTCS-------EETTEECB-------SSGGGCSSCCSEEEECSC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCE-EEEECCCCC-------eECCeecc-------CCHHHcCCCCCEEEEEeC
Confidence 5789999998 89999999999999997 776643211 11222221 223333457898887642
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
. .....+++.|.+.|++.+++.
T Consensus 87 ~------------------~~~~~vv~~~~~~gi~~i~~~ 108 (144)
T 2d59_A 87 P------------------KLTMEYVEQAIKKGAKVVWFQ 108 (144)
T ss_dssp H------------------HHHHHHHHHHHHHTCSEEEEC
T ss_pred H------------------HHHHHHHHHHHHcCCCEEEEC
Confidence 1 123457888889999876543
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0067 Score=58.77 Aligned_cols=69 Identities=25% Similarity=0.337 Sum_probs=46.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCC-CCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRT-NSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~-~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+.+|+|.|.| +|.+|+.+++.|.+.|+ + |++.||++ +... ......+++. . ++..++++++|+||-+.
T Consensus 22 ~~~~~I~iIG-~G~mG~~~A~~L~~~G~~~-V~~~dr~~~~~~~-~~~~~~g~~~----~---~~~~e~~~~aDvVi~~v 91 (312)
T 3qsg_A 22 SNAMKLGFIG-FGEAASAIASGLRQAGAID-MAAYDAASAESWR-PRAEELGVSC----K---ASVAEVAGECDVIFSLV 91 (312)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHHSCCE-EEEECSSCHHHHH-HHHHHTTCEE----C---SCHHHHHHHCSEEEECS
T ss_pred CCCCEEEEEC-ccHHHHHHHHHHHHCCCCe-EEEEcCCCCHHHH-HHHHHCCCEE----e---CCHHHHHhcCCEEEEec
Confidence 4568999998 69999999999999999 7 99999863 2111 1112223332 1 23455667899999876
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
.
T Consensus 92 p 92 (312)
T 3qsg_A 92 T 92 (312)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.02 Score=56.43 Aligned_cols=75 Identities=16% Similarity=0.042 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
.+.+|||+|+ |-||...++.+...|.+ |+++++++.... .....-+... ..|..+.+.+.++..++|+||++++.
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~-Vi~~~~~~~~~~-~~~~~lGa~~-vi~~~~~~~~~~~~~g~D~vid~~g~ 254 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHH-VTVISSSNKKRE-EALQDLGADD-YVIGSDQAKMSELADSLDYVIDTVPV 254 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCE-EEEEESSTTHHH-HHHTTSCCSC-EEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCe-EEEEeCChHHHH-HHHHHcCCce-eeccccHHHHHHhcCCCCEEEECCCC
Confidence 5689999995 99999999988889997 999988755221 1111222222 23556666677666789999999974
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0027 Score=62.78 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=47.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc------CCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI------NHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~------~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
+.+++|+|.|.| +|.+|+.++..|.+.|++ |++.+|++......... .++++. ...+.-..++.++++++|
T Consensus 25 m~~~~mkI~VIG-aG~mG~alA~~La~~G~~-V~l~~r~~~~~~~i~~~~~~~~~l~g~~l-~~~i~~t~d~~ea~~~aD 101 (356)
T 3k96_A 25 MEPFKHPIAILG-AGSWGTALALVLARKGQK-VRLWSYESDHVDEMQAEGVNNRYLPNYPF-PETLKAYCDLKASLEGVT 101 (356)
T ss_dssp --CCCSCEEEEC-CSHHHHHHHHHHHTTTCC-EEEECSCHHHHHHHHHHSSBTTTBTTCCC-CTTEEEESCHHHHHTTCC
T ss_pred ccccCCeEEEEC-ccHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHcCCCcccCCCCcc-CCCeEEECCHHHHHhcCC
Confidence 334567899999 599999999999999999 99999864321000000 111110 001111123566788999
Q ss_pred EEEEcc
Q 011770 81 CVFHVA 86 (478)
Q Consensus 81 ~ViHlA 86 (478)
+||-+.
T Consensus 102 vVilaV 107 (356)
T 3k96_A 102 DILIVV 107 (356)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999765
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.017 Score=57.37 Aligned_cols=74 Identities=18% Similarity=0.096 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
.+.+|||+|+ |-+|...++.+...|.+ |+++++++.... ....-+... ..|..+.+.++++..++|+||++++.
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~-Vi~~~~~~~~~~--~a~~lGa~~-vi~~~~~~~~~~~~~g~Dvvid~~g~ 267 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAH-VVAFTTSEAKRE--AAKALGADE-VVNSRNADEMAAHLKSFDFILNTVAA 267 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSGGGHH--HHHHHTCSE-EEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCHHHHH--HHHHcCCcE-EeccccHHHHHHhhcCCCEEEECCCC
Confidence 4679999997 88999999988889998 999987654321 111112222 24666665555555689999999974
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.015 Score=55.94 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=43.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+||-++| .|.+|+.+++.|++.||+ |++.||++.... .....+.+.. ++..++++++|+||-|-.
T Consensus 5 s~kIgfIG-LG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~--~l~~~G~~~~-------~s~~e~~~~~dvvi~~l~ 70 (297)
T 4gbj_A 5 SEKIAFLG-LGNLGTPIAEILLEAGYE-LVVWNRTASKAE--PLTKLGATVV-------ENAIDAITPGGIVFSVLA 70 (297)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCE-EEEC-------C--TTTTTTCEEC-------SSGGGGCCTTCEEEECCS
T ss_pred CCcEEEEe-cHHHHHHHHHHHHHCCCe-EEEEeCCHHHHH--HHHHcCCeEe-------CCHHHHHhcCCceeeecc
Confidence 35899998 799999999999999999 999998876331 2222333321 234567788999987753
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.014 Score=59.48 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT 46 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~ 46 (478)
.+++|||+||+|-||...++.+...|.+ |+++++++
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~-vi~~~~~~ 255 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGI-PVAVVSSA 255 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCH
Confidence 5689999999999999999999999998 99988654
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.01 Score=58.38 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=47.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEE------ecCC-CHHHHHHHhcCcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQ------GDVV-SKIDVEKAARGVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~------gDl~-d~~~l~~~l~~~D~Vi 83 (478)
+|+|.|.|+ |.+|+.++..|.+.|++ |++++|++..... .....++.... ..+. ..++++++++++|+||
T Consensus 4 ~mki~iiG~-G~~G~~~a~~L~~~g~~-V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 80 (359)
T 1bg6_A 4 SKTYAVLGL-GNGGHAFAAYLALKGQS-VLAWDIDAQRIKE-IQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL 80 (359)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCHHHHHH-HHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCE-EEEEeCCHHHHHH-HHhcCCeEEeccccccccccceecCCHHHHHhcCCEEE
Confidence 479999995 99999999999999998 9999886542110 10111121110 1110 1123455678999999
Q ss_pred Eccc
Q 011770 84 HVAS 87 (478)
Q Consensus 84 HlAa 87 (478)
-+..
T Consensus 81 ~~v~ 84 (359)
T 1bg6_A 81 IVVP 84 (359)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 8875
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=55.97 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=49.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccccc--CCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLI--NHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~--~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
...+++++|+|+ |-+|+.++..|.+.|..+|++.+|+.......... ..+++.+ +..+ +.. .++|+||++
T Consensus 117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~--~~~~---l~~--~~~DivIna 188 (272)
T 3pwz_A 117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRIS--RYEA---LEG--QSFDIVVNA 188 (272)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEE--CSGG---GTT--CCCSEEEEC
T ss_pred CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEe--eHHH---hcc--cCCCEEEEC
Confidence 457899999996 88999999999999974499998875422111001 1123332 2222 221 689999999
Q ss_pred ccCCC
Q 011770 86 ASYGM 90 (478)
Q Consensus 86 Aa~~~ 90 (478)
.+.++
T Consensus 189 Tp~gm 193 (272)
T 3pwz_A 189 TSASL 193 (272)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 87543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 478 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 9e-33 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-32 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-32 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-30 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 2e-22 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 4e-21 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 8e-21 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 8e-20 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 9e-20 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 6e-19 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 9e-19 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-17 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 3e-15 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-11 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 2e-10 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 3e-10 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 4e-10 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 9e-10 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 1e-09 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 3e-09 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 3e-09 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 2e-08 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 2e-08 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 5e-08 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 8e-08 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 1e-07 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 2e-07 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 3e-07 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 6e-07 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 3e-06 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 3e-06 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 5e-06 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 5e-06 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 5e-06 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 6e-06 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 7e-06 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 1e-05 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 1e-05 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 1e-05 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 1e-05 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 1e-05 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 1e-05 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-05 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-05 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 5e-05 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 5e-05 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 6e-05 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 6e-05 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 8e-05 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 9e-05 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 9e-05 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 1e-04 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 2e-04 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 2e-04 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 2e-04 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 2e-04 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 3e-04 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 3e-04 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 4e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 4e-04 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 4e-04 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 6e-04 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 8e-04 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 0.001 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 0.002 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 0.002 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 0.002 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 0.003 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 0.003 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 0.003 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 124 bits (312), Expect = 9e-33
Identities = 65/366 (17%), Positives = 113/366 (30%), Gaps = 63/366 (17%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
K L+TGG G VGS L +L+ G ++V D + + H + ++++
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRN--VEHWIGHENFELINHDV 58
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
VE VD ++H+AS M + + N GT +++ G RL+ ST
Sbjct: 59 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSE 117
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVR 191
V + + + Y K VAE + ++ + R
Sbjct: 118 VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAY-------MKQEGVEVRVAR 170
Query: 192 PAAIYGPG----EERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLL 247
+GP + R + + A G G S + YV +LV L+
Sbjct: 171 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN--- 227
Query: 248 DDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFS 307
P + + EF + + +L+
Sbjct: 228 ----------SNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA---------- 267
Query: 308 FFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATIS 367
+ K + KAK L + P+V EG+ I
Sbjct: 268 ---------------------QDDPQKR----KPDIKKAKLMLGWEPVVPLEEGLNKAIH 302
Query: 368 YWQDRK 373
Y++
Sbjct: 303 YFRKEL 308
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 124 bits (313), Expect = 2e-32
Identities = 65/383 (16%), Positives = 127/383 (33%), Gaps = 72/383 (18%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW----SHLLINHGVHCIQGDVVSKI 70
L+TGG G +GSA+ +++ V D T + S + ++ + D+
Sbjct: 4 LITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSA 63
Query: 71 DVEKAARG--VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ------ 122
++ + D V H+A+ + + E NI GT ++E ++
Sbjct: 64 EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKK 123
Query: 123 ---RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH------VDSYGRSKSVAEQLVLKSN 173
R ++ST + V+G + E+ P+ Y SK+ ++ LV ++
Sbjct: 124 NNFRFHHIST-DEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLV-RAW 181
Query: 174 GRPFKKNNRKCLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231
R + L T + YGP E+ +P ++ A G G+ DW+Y
Sbjct: 182 RRTYG------LPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLY 235
Query: 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPK 291
V++ AL + +G+ G+ Y + +
Sbjct: 236 VEDHARALHMVV---------TEGKA---GETYNIGGHNEKKNLD--------------- 268
Query: 292 SWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYF-SLLKAKDEL 350
V +L + + + I Y K EL
Sbjct: 269 -------------VVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISREL 315
Query: 351 CYVPIVSPREGMAATISYWQDRK 373
+ P+ + G+ T+ ++
Sbjct: 316 GWKPLETFESGIRKTVEWYLANT 338
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 124 bits (313), Expect = 2e-32
Identities = 66/384 (17%), Positives = 125/384 (32%), Gaps = 50/384 (13%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS---------PWSHLLINHGVHCI 62
K L+TG G GS L L+ +G Y+V R +S N H
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLH 60
Query: 63 QGDVVSKIDVEK--AARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
GD+ ++ + D V+++ + +V+ GT ++EA G
Sbjct: 61 YGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG 120
Query: 121 IQ---RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPF 177
++ R ST + ++G + + E+ P++P Y +K A + +
Sbjct: 121 LEKKTRFYQAST-SELYGLVQEIPQKETTPFYPR----SPYAVAKLYAYWITVNY----- 170
Query: 178 KKNNRKCLYTCAVRPAAIYGP-----GEERHLPRIVSLAKLGL-VPFKIGEPSVKTDWIY 231
+Y C P R + R ++ GL +G DW +
Sbjct: 171 --RESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGH 228
Query: 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPK 291
+ V + + + ++ G + +F+ L L
Sbjct: 229 AKDYVKMQWMMLQQ-------------EQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF 275
Query: 292 SWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELC 351
V + V + P + PAEV T KA ++L
Sbjct: 276 EGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVE----TLLGDPTKAHEKLG 331
Query: 352 YVPIVSPREGMAATISYWQDRKRK 375
+ P ++ RE ++ ++ + +K
Sbjct: 332 WKPEITLREMVSEMVANDLEAAKK 355
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 118 bits (297), Expect = 1e-30
Identities = 74/370 (20%), Positives = 134/370 (36%), Gaps = 69/370 (18%)
Query: 15 LVTGGLGHVGSALCLELVRRG-----AYQVRAFDLRTNSPW----SHLLINHGVHCIQGD 65
LVTGG G +GS +L+ A +V D T + + + + + + GD
Sbjct: 4 LVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGD 63
Query: 66 VVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125
+ + + RGVD + H A+ + + E N+ GT +++ ++ G+ R+V
Sbjct: 64 IRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVV 123
Query: 126 YVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCL 185
+VS N V+G + + ES P P Y SK+ ++ + + L
Sbjct: 124 HVS-TNQVYGSIDSGSWTESSPLEPN----SPYAASKAGSDLVARAY-------HRTYGL 171
Query: 186 YTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS 243
R YGP + E+ +P V+ G G+ + +W++ D+ + L
Sbjct: 172 DVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALV- 230
Query: 244 MGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLG 303
GR G+ Y + G + E G LL +L D
Sbjct: 231 --------LAGGRA---GEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADR----- 274
Query: 304 KVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMA 363
+ + K + EL Y P VS +G+A
Sbjct: 275 -------------------------KGHDLR----YSLDGGKIERELGYRPQVSFADGLA 305
Query: 364 ATISYWQDRK 373
T+ ++++ +
Sbjct: 306 RTVRWYRENR 315
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.8 bits (237), Expect = 2e-22
Identities = 64/385 (16%), Positives = 118/385 (30%), Gaps = 61/385 (15%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS----------PWSHLLINHGVHC 61
L+TG G GS L L+ +G Y+V R++S I +
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKL 60
Query: 62 IQGDVVSKIDVEKAARGVDCVFHVASYGMS--GKEMLQFGRVDEVNINGTCHVIEACLEF 119
GD+ + K V S +V+ GT +++A
Sbjct: 61 HYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC 120
Query: 120 GIQ---RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRP 176
G+ + ST + ++G + + E+ P++P YG +K A +V+
Sbjct: 121 GLINSVKFYQAST-SELYGKVQEIPQKETTPFYPR----SPYGAAKLYAYWIVVNF---- 171
Query: 177 FKKNNRKCLYTCAVRPAAIYGP-----GEERHLPRIVSLAKLGLVPFKI-GEPSVKTDWI 230
L+ P R + R V+ LG + G K DW
Sbjct: 172 ---REAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWG 228
Query: 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLP 290
+ + V A+ L + IA+G+ + V + + ++ +
Sbjct: 229 HAKDYVEAMWLMLQ-----NDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENE 283
Query: 291 KSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDEL 350
+ + ++ P EV + KAK +L
Sbjct: 284 VGRCKETGKVHVTVDLKYYR------------------PTEVDFL----QGDCTKAKQKL 321
Query: 351 CYVPIVSPREGMAATISYWQDRKRK 375
+ P V+ E + + + R
Sbjct: 322 NWKPRVAFDELVREMVHADVELMRT 346
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 91.6 bits (226), Expect = 4e-21
Identities = 49/245 (20%), Positives = 86/245 (35%), Gaps = 24/245 (9%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP----WSHLLINHGVHCIQGDVV 67
++ LVTG G G+ L L+ +G Y+V R +S L I + GD+
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMA 59
Query: 68 SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVD--EVNINGTCHVIEACLEFGIQRLV 125
V++A S V V+ G H++EA +F +
Sbjct: 60 DACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 119
Query: 126 YVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCL 185
Y ++ + +FG + +E+ P++ YG +K + + L
Sbjct: 120 YQASTSEMFGLIQAERQDENTPFY----PRSPYGVAKLYGHWITV-------NYRESFGL 168
Query: 186 YTCAVRPAAIYGP-----GEERHLPRIVSLAKLGL-VPFKIGEPSVKTDWIYVDNLVLAL 239
+ + P R + V+ KLG ++G K DW + + V A+
Sbjct: 169 HASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAM 228
Query: 240 ILASM 244
L
Sbjct: 229 WLMLQ 233
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.3 bits (225), Expect = 8e-21
Identities = 65/376 (17%), Positives = 118/376 (31%), Gaps = 53/376 (14%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDV 66
K LVTGG G++GS +EL+ G Y D +NS + + L H + + D+
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDL 60
Query: 67 VSKIDVEKAAR--GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
+ +EK + +D V H A G+ R NI GT ++E ++ + +
Sbjct: 61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 120
Query: 125 VYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVL---KSNGRPFKKNN 181
V+ S+ V N P+ + YG +K E ++ S+ + +K
Sbjct: 121 VFSSSATVYGDATRFPNMIPIPEECPLGPT-NPYGHTKYAIENILNDLYNSDKKSWKFAI 179
Query: 182 RKCLYTCAVRPAAIYGPG----EERHLPRIVSLAKLGLVPFKI-GEPSVKTDWIYVDNLV 236
+ P+ + G LP + +A I G+ D + + +
Sbjct: 180 LRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYI 239
Query: 237 LALILASMGLLDDI-PGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLA 295
+ LA + + + + G FE K DLP
Sbjct: 240 HVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTG 299
Query: 296 VPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPI 355
+V + +AK EL +
Sbjct: 300 RR-------------------------------AGDVLNL----TAKPDRAKRELKWQTE 324
Query: 356 VSPREGMAATISYWQD 371
+ + + +
Sbjct: 325 LQVEDSCKDLWKWTTE 340
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 88.5 bits (218), Expect = 8e-20
Identities = 66/383 (17%), Positives = 121/383 (31%), Gaps = 72/383 (18%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK 74
+TG G + S + L G + V A D + N + + D+ + K
Sbjct: 19 SITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTEDMFC--DEFHLVDLRVMENCLK 75
Query: 75 AARGVDCVFHVAS-YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133
GVD VF++A+ G G + N + ++IEA GI+R Y S+ +
Sbjct: 76 VTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIY 135
Query: 134 FGGKEIVNGNESLPYFPID--EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVR 191
K++ N SL E D++G K E+L N + R
Sbjct: 136 PEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHY-------NKDFGIECRIGR 188
Query: 192 PAAIYGPGEERHLPRIVSLAKLGLVPFKI-------GEPSVKTDWIYVDNLVLALILASM 244
IYGP R + A G+ + ++D V ++ +
Sbjct: 189 FHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTK 248
Query: 245 GLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGK 304
+P + ++ E +L + LP
Sbjct: 249 S-------------DFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPI------------- 282
Query: 305 VFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTH-YFSLLKAKDELCYVPIVSPREGMA 363
+P P GV K++L + P + +EG+
Sbjct: 283 ---------------HHIPGPE---------GVRGRNSDNNLIKEKLGWAPNMRLKEGLR 318
Query: 364 ATISYWQDR-KRKSLDGPTIYAW 385
T + +++ +++ G + +
Sbjct: 319 ITYFWIKEQIEKEKAKGSDVSLY 341
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 88.1 bits (217), Expect = 9e-20
Identities = 67/375 (17%), Positives = 122/375 (32%), Gaps = 68/375 (18%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---------LINHGVHCI 62
K +L+TG G +GS L L++ +V D +L I
Sbjct: 17 KVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFI 75
Query: 63 QGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ 122
QGD+ + D A GVD V H A+ G + + + NI+G +++ A + +Q
Sbjct: 76 QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 135
Query: 123 RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNR 182
Y ++ + +G + E P+ Y +K V E +
Sbjct: 136 SFTYAASSS-TYGDHPGLPKVEDTIGKPL----SPYAVTKYVNELYADVF-------SRC 183
Query: 183 KCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLV 236
T +R ++G ++ + +P+ S G + G+ D+ Y++N V
Sbjct: 184 YGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTV 243
Query: 237 LALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAV 296
A +LA+ A Q Y ++ G + + L L +
Sbjct: 244 QANLLAA----------TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVS----- 288
Query: 297 PHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIV 356
Y + + +V + KA L Y P
Sbjct: 289 -------------YHREPVYRDFR--------EGDVRHS----LADISKAAKLLGYAPKY 323
Query: 357 SPREGMAATISYWQD 371
G+A + ++
Sbjct: 324 DVSAGVALAMPWYIM 338
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 85.3 bits (210), Expect = 6e-19
Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 29/199 (14%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+ + G G VGSA+ +L +RG R +++
Sbjct: 3 QRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRDE----------------LNLLDSRA 45
Query: 72 VEK--AARGVDCVFHVA-SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
V A+ +D V+ A G N+ ++I A + + +L+++
Sbjct: 46 VHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLG 105
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDS-YGRSKSVAEQLVLKSNGRPFKKNNRKCLYT 187
+ + ++ ES E + Y +K +L +S R +
Sbjct: 106 S-SCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLC-ESYNRQYG------RDY 157
Query: 188 CAVRPAAIYGPGEERHLPR 206
+V P +YGP + H
Sbjct: 158 RSVMPTNLYGPHDNFHPSN 176
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 85.0 bits (209), Expect = 9e-19
Identities = 61/377 (16%), Positives = 112/377 (29%), Gaps = 69/377 (18%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS-----PWSHLLINHGVHCIQGDVVSK 69
LVTGG G++GS C++L++ G + V D NS P L ++GD+ ++
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 70 IDVEKAAR--GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
+ + +D V H A G+ + + + N+NGT +I A ++ ++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 128 STYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYT 187
S+ V +I P YG+SK + EQ++
Sbjct: 123 SSATVYGDQPKIPYVESFPTGTPQ----SPYGKSKLMVEQILTDLQKAQPDW------SI 172
Query: 188 CAVRPAAIYGPGE------------ERHLPRIVSLAKLGLVPFKI-GEPSVKTDWIYVDN 234
+R G +P I +A I G D V +
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWL 294
+ + LA + +K Y + G + + + K + +
Sbjct: 233 YIHVMDLADG---HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 295 AVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVP 354
++ + KA EL +
Sbjct: 290 PRR-------------------------------EGDLPAY----WADASKADRELNWRV 314
Query: 355 IVSPREGMAATISYWQD 371
+ E T +
Sbjct: 315 TRTLDEMAQDTWHWQSR 331
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 82.0 bits (201), Expect = 1e-17
Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 23/247 (9%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS---HLLINHGVHCIQGDVV 67
K +VTGG G +GS + V D T + ++ V + GD+
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 62
Query: 68 SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127
V+K A D + H A+ + + N GT ++EA ++ I+ +
Sbjct: 63 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF--HH 120
Query: 128 STYNVVFGG---KEIVNGNESLPYFPIDEH-----VDSYGRSKSVAEQLVLKSNGRPFKK 179
+ + V+G +E + G+ P Y +K+ ++ +V K+ R F
Sbjct: 121 VSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIV-KAWVRSFG- 178
Query: 180 NNRKCLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237
+ + YGP + E+ +PR ++ G+ P GE DWI+ ++
Sbjct: 179 -----VKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHST 233
Query: 238 ALILASM 244
+
Sbjct: 234 GVWAILT 240
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 74.8 bits (182), Expect = 3e-15
Identities = 59/377 (15%), Positives = 117/377 (31%), Gaps = 65/377 (17%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKI 70
L+TGG G +GS L + +G + FD + + L + GD+ +K
Sbjct: 4 LITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKN 62
Query: 71 DVEKAARGV--DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
DV + D FH+A + E+N+ GT +++EA ++ + S
Sbjct: 63 DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYS 122
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDSY------------GRSKSVAEQLVL---KSN 173
+ N V+G E NE+ + + + Y G SK A+Q +L +
Sbjct: 123 STNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF 182
Query: 174 GRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233
G +Y G + + G D ++ +
Sbjct: 183 GLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAE 242
Query: 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSW 293
+++ A L ++ +G + ++ E L + D+ +
Sbjct: 243 DMISLYFTA----LANVSKIRGNA----FNIGGTIVNSLSLLELFKLLEDYCNIDMRFTN 294
Query: 294 LAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYV 353
L V ++ + K + + +
Sbjct: 295 LPVR-------------------------------ESDQRVF----VADIKKITNAIDWS 319
Query: 354 PIVSPREGMAATISYWQ 370
P VS ++G+ +
Sbjct: 320 PKVSAKDGVQKMYDWTS 336
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.2 bits (152), Expect = 2e-11
Identities = 59/386 (15%), Positives = 115/386 (29%), Gaps = 75/386 (19%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----------HLLINHGVH 60
+ LVTGG G++GS LEL+ G Y D N+ L V
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61
Query: 61 CIQGDVVSKIDVEKAARGVDCV--FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLE 118
+ D++ + +++ + + H A G+ + + VN+ GT ++E
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 121
Query: 119 FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFK 178
G++ LV+ S+ V P + YG+SK E+++
Sbjct: 122 HGVKNLVFSSSATVYG----NPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKT 177
Query: 179 KNNRKCLYTCAVRPAAIYGP-----------GEERHL-PRIVSLAKLGLVPFKI-GEPSV 225
N +R G G +L P + +A + G
Sbjct: 178 WN------AVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYD 231
Query: 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTL 285
D V + + + LA + ++ + Y + G + + + + K
Sbjct: 232 TEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGC---RIYNLGTGTGYSVLQMVQAMEKAS 288
Query: 286 DYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLK 345
+P +A +V Y +
Sbjct: 289 GKKIPYKVVARR-------------------------------EGDVAAC----YANPSL 313
Query: 346 AKDELCYVPIVSPREGMAATISYWQD 371
A++EL + + + +
Sbjct: 314 AQEELGWTAALGLDRMCEDLWRWQKQ 339
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 59.3 bits (142), Expect = 2e-10
Identities = 44/251 (17%), Positives = 78/251 (31%), Gaps = 33/251 (13%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS----------PWSHLLINHGVHC 61
K L+TG G GS L L+ +G Y+V R+++ H + +
Sbjct: 2 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKL 60
Query: 62 IQGDVVSKIDVEKA--ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACL-- 117
D+ + + D V+++A+ +V G ++EA
Sbjct: 61 HYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH 120
Query: 118 -EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRP 176
+ + Y + G +E+ P+ P + SK A +
Sbjct: 121 TIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPY----AASKCAAHWYTV------ 170
Query: 177 FKKNNRKCLYTCAVRPAAIYGPGE-----ERHLPRIVSLAKLGLVPFKI-GEPSVKTDWI 230
L+ C P R + R + K+GL G DW
Sbjct: 171 -NYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWG 229
Query: 231 YVDNLVLALIL 241
+ + V A+ L
Sbjct: 230 FAGDYVEAMWL 240
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 3e-10
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 10/128 (7%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
K + G G G + V+ G Y+V ++ S H + GDV+ D
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSE--GPRPAHVVVGDVLQAAD 60
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
V+K G D V + G +++ A G+ ++V ++
Sbjct: 61 VDKTVAGQDAVIVLLGTRNDLSPTTV-------MSEGARNIVAAMKAHGVDKVVACTSAF 113
Query: 132 VVFGGKEI 139
+++ ++
Sbjct: 114 LLWDPTKV 121
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 58.7 bits (140), Expect = 4e-10
Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 31/281 (11%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP------WSHLLINHGVHCIQ 63
EG LVTG G V S + +L+ G Y+VR + W +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 64 GDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEAC-LEFGIQ 122
D++ + ++ +G V H ++ V I GT + + A ++
Sbjct: 69 EDMLKQGAYDEVIKGAAGVAH---IASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVK 125
Query: 123 RLVYVSTYNVVFGGKEIVNG---------------NESLPYFPIDEHVDSYGRSKSVAEQ 167
R V S+ K V G ++LP + + Y SK+ AE
Sbjct: 126 RFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAEL 185
Query: 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227
K I+ P + ++
Sbjct: 186 AAWKFMDENKPHFTLNA-VLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQ 244
Query: 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSD 268
++ ++ L + + ++ R + + +
Sbjct: 245 YYVSAVDIGLLHLGCLV----LPQIERRRVYGTAGTFDWNT 281
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 57.7 bits (138), Expect = 9e-10
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-HLLINHGVHCIQGDVVS 68
+ KT V G G G++L G + VRA + L V QG +++
Sbjct: 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLN 60
Query: 69 KIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
+ + + + + +G I + +A G + S
Sbjct: 61 NVPLMDTLFEGAHLAFINTTSQAGD-----------EIAIGKDLADAAKRAGTIQHYIYS 109
Query: 129 TYNVVF 134
+
Sbjct: 110 SMPDHS 115
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 57.3 bits (136), Expect = 1e-09
Identities = 54/369 (14%), Positives = 120/369 (32%), Gaps = 38/369 (10%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDV-E 73
L+ G G +G+ L L+R Y+V D+ +++ S L + H ++GD+ + E
Sbjct: 4 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA-ISRFLNHPHFHFVEGDISIHSEWIE 62
Query: 74 KAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133
+ D V + + + RV E++ +I C+++ + + ++
Sbjct: 63 YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 122
Query: 134 FGGKEIVNGNESLPYFPIDEH-VDSYGRSKSVAEQLVL---KSNGRPFKKNNRKCLYTCA 189
+ + + S Y SK + ++++ + G F
Sbjct: 123 MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPR 182
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249
+ G R + +++ G I K + + + + AL
Sbjct: 183 LDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY--------- 233
Query: 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309
+ G+ + + + E +G +L P P A F S +
Sbjct: 234 RIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSY 293
Query: 310 YSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYW 369
Y Y + S+ A L + P + +E + T+ ++
Sbjct: 294 YGKGYQDVEHRKP-------------------SIRNAHRCLDWEPKIDMQETIDETLDFF 334
Query: 370 QDRKRKSLD 378
+++D
Sbjct: 335 ----LRTVD 339
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 56.4 bits (134), Expect = 3e-09
Identities = 44/230 (19%), Positives = 74/230 (32%), Gaps = 9/230 (3%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGD 65
+GK VTG G G L L L G V+ + L + S + G+ GD
Sbjct: 6 WQGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETARVADGMQSEIGD 64
Query: 66 V--VSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR 123
+ +K+ + VFH+A+ + + N+ GT +++EA G +
Sbjct: 65 IRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVK 124
Query: 124 LVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRK 183
V T + + KE + G + + + S P
Sbjct: 125 AVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHG 184
Query: 184 CLYTCAVRPAAIYGPGE--ERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231
VR + G G+ + + A P I P W +
Sbjct: 185 TAVAT-VRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQH 233
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 56.3 bits (134), Expect = 3e-09
Identities = 55/408 (13%), Positives = 110/408 (26%), Gaps = 90/408 (22%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---------------------HL 53
LV GG G++GS L+R + V D +
Sbjct: 6 LVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPP 65
Query: 54 LINHGVHCIQGDVVSKIDVEKA---ARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTC 110
+ GDV ++ + +D V H+ ++ G+ + + + N+ G
Sbjct: 66 WADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGIL 125
Query: 111 HVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH--VDSYGRSKSVAEQL 168
+++A L ++++ S+ + + P + YG SK +AE++
Sbjct: 126 RLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERM 185
Query: 169 VL---KSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPS 224
+ ++ G HL P I+ + P +
Sbjct: 186 IRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIH 245
Query: 225 VKT----------------------DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQ 262
D+++V +L A ILA
Sbjct: 246 EDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALD---YVEKLGPNDKSKYFS 302
Query: 263 PYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWL 322
+ + + E I KT + +P
Sbjct: 303 VFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRR------------------------- 337
Query: 323 PQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQ 370
+ + + KA++ L + P E + T +Q
Sbjct: 338 ------EGDPAYL----VAASDKAREVLGWKPKYDTLEAIMETSWKFQ 375
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 53.6 bits (127), Expect = 2e-08
Identities = 29/234 (12%), Positives = 56/234 (23%), Gaps = 40/234 (17%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS------PWSHLLINHGVHCIQGDVVS 68
L+ GG G++G + + G + G I+ +
Sbjct: 7 LIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 65
Query: 69 KIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128
+ A + VD V + G+ +L ++EA E G + S
Sbjct: 66 HQRLVDALKQVDVVISALAGGVLSHHIL-----------EQLKLVEAIKEAGNIKRFLPS 114
Query: 129 TYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTC 188
+ + F V + +
Sbjct: 115 EFG-MDPDIMEHALQPGSITFIDKRKV---------------------RRAIEAASIPYT 152
Query: 189 AVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242
V G + G+ +VK W+ D++ I +
Sbjct: 153 YVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKS 206
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 51.8 bits (123), Expect = 2e-08
Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 2/126 (1%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN--SPWSHLLINHGVHCIQGDV 66
++GK +V G G VG L GA V + + V+ +
Sbjct: 21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAET 80
Query: 67 VSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126
+A +G VF + G+ + + I + GI
Sbjct: 81 ADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDK 140
Query: 127 VSTYNV 132
Y
Sbjct: 141 GKEYGG 146
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (123), Expect = 5e-08
Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 26/172 (15%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
GK +VTGG +G+ + V GA +V D + + G I DV +
Sbjct: 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQE 63
Query: 70 IDVEKAAR-------GVDCVFHVASYGMSGK-----EMLQFGRVDEVNINGTCHVIEACL 117
DV+ +DCV + A + + F ++ E+N+ GT + + L
Sbjct: 64 DDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLAL 123
Query: 118 EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
+ + ++N + + + V Y +K +
Sbjct: 124 PYLRK------------SQGNVINISSLVGAIGQAQAV-PYVATKGAVTAMT 162
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.7 bits (121), Expect = 8e-08
Identities = 37/168 (22%), Positives = 54/168 (32%), Gaps = 21/168 (12%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLIN-HGVHCIQGDVVS 68
G LVTG +G L GA +V A RTNS L G+ + D+
Sbjct: 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVT-RTNSDLVSLAKECPGIEPVCVDLGD 61
Query: 69 KIDVEKAAR---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFGI 121
EKA VD + + A+ + F R VN+ V + I
Sbjct: 62 WDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMI 121
Query: 122 QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
R IVN + + + + +Y +K L
Sbjct: 122 NR----------GVPGSIVNVSSMVAHVTFPNLI-TYSSTKGAMTMLT 158
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 50.6 bits (121), Expect = 1e-07
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
GK LVTGG +G A+ R GA V DLR + G Q D+ +
Sbjct: 4 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEG--KEVAEAIGGAFFQVDLEDE 60
Query: 70 IDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE 118
+ + VD + + A+ G + ++ RV EVN+ H+
Sbjct: 61 RERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAR 120
Query: 119 FGIQR 123
+
Sbjct: 121 EMRKV 125
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 30/232 (12%), Positives = 58/232 (25%), Gaps = 22/232 (9%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
T LVTG G G + +L + A L S I GD+
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKEGS-DKFVAKGL-VRSAQGKEKIGGEADVFIGDITDADS 61
Query: 72 VEKAARGVDCVFHVASY-GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130
+ A +G+D + + S I E G + + +
Sbjct: 62 INPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV 121
Query: 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAV 190
V + + + P P+++ + +L + + +
Sbjct: 122 AGVKHIVVVGSMGGTNPDHPLNKLGNGN----------ILVWKRKAEQYLADSGTPYTII 171
Query: 191 RPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILA 242
R + +V T + ++ I A
Sbjct: 172 RAGGLLDKEGGVR-ELLVGKDDEL--------LQTDTKTVPRADVAEVCIQA 214
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 49.1 bits (117), Expect = 3e-07
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 14/127 (11%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG--VHCIQGDVV 67
+ K ++TGG +G A+ GA + DL + N G V ++ DV
Sbjct: 4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS 62
Query: 68 SKIDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEAC 116
DVE + D + + A Q+ + E+N++ + +A
Sbjct: 63 QPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAF 122
Query: 117 LEFGIQR 123
+ +
Sbjct: 123 VPGMKRN 129
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 48.1 bits (114), Expect = 6e-07
Identities = 30/221 (13%), Positives = 60/221 (27%), Gaps = 25/221 (11%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQV----RAFDLRTNSPWSHLLINHGVHCIQG 64
+ K + LG +G ELV+R R + + + +
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTY 62
Query: 65 DVVSKI-DVEKAARGVDCVF-----HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLE 118
DV + + +K + + + G+ Q R +N G + A L+
Sbjct: 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDH--QIERTIAINFTGLVNTTTAILD 120
Query: 119 FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFK 178
F +R V G ++ P+ Y SK+ S +
Sbjct: 121 FWDKRKGGPGGIIANICS---VTGFNAIHQVPV------YSASKAAVVSFT-NSLAKLAP 170
Query: 179 KNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFK 219
++ P P + ++ +
Sbjct: 171 ITGVTA---YSINPGITRTPLVHTFNSWLDVEPRVAELLLS 208
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.4 bits (109), Expect = 3e-06
Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 11/136 (8%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGD---V 66
E + LV GG G +GS R V + D+ N S +I V
Sbjct: 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEASASVIVKMTDSFTEQADQV 59
Query: 67 VSKIDVEKAARGVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEA--CLEF 119
+++ + VD + VA G + + +I +
Sbjct: 60 TAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLK 119
Query: 120 GIQRLVYVSTYNVVFG 135
L + G
Sbjct: 120 EGGLLTLAGAKAALDG 135
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (109), Expect = 3e-06
Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 29/202 (14%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS--PWSHLLINHG--VHCIQG 64
+ G+ L+TG +G E + + ++ +D+ + + G VH
Sbjct: 5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVV 63
Query: 65 DVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEML----QFGRVDEVNINGTCHVI 113
D ++ D+ +A+ V + + A + Q + EVN+
Sbjct: 64 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 123
Query: 114 EACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSN 173
+A L + IV + + + + +Y SK A K+
Sbjct: 124 KAFLPAMTKN-----------NHGHIVTVASAAGHVSVPFLL-AYCSSKFAAVGFH-KTL 170
Query: 174 GRPFKKNNRKCLYTCAVRPAAI 195
+ T + P +
Sbjct: 171 TDELAALQITGVKTTCLCPNFV 192
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 45.8 bits (108), Expect = 5e-06
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG--VHCIQGDVV 67
+G+ L+TGG +G AL V GA +V D ++ + L +HG V I GDV
Sbjct: 4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLD-KSAERLAELETDHGDNVLGIVGDVR 61
Query: 68 SKIDVEKAAR-------GVDCVFHVASYGMSGKEML---------QFGRVDEVNINGTCH 111
S D ++AA +D + A ++ F V +N+ G H
Sbjct: 62 SLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIH 121
Query: 112 VIEACLEFGIQR 123
++ACL +
Sbjct: 122 AVKACLPALVAS 133
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (107), Expect = 5e-06
Identities = 41/225 (18%), Positives = 65/225 (28%), Gaps = 25/225 (11%)
Query: 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV 67
+ G+ LVTG +G L GA +V A S + G+ + D+
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLG 62
Query: 68 SKIDVEKAAR---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG 120
E+A VD + + A+ + F R EVN+ V +
Sbjct: 63 DWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGL 122
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
I R IVN + + H Y +K + L K +
Sbjct: 123 IAR----------GVPGAIVNVSSQCSQRAVTNH-SVYCSTKGALDMLT-KVMALELGPH 170
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAK-LGLVPFK-IGEP 223
+ AV P + + L +P E
Sbjct: 171 KIRV---NAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEV 212
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (107), Expect = 5e-06
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 18/124 (14%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR------TNSPWSHLLINHGVHCI 62
+ GK LVTG +G A L+ +GA +V D + I
Sbjct: 1 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFI 59
Query: 63 QGDVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEA 115
Q DV + + R +D + + A + + ++N+
Sbjct: 60 QCDVADQQQLRDTFRKVVDHFGRLDILVNNA----GVNNEKNWEKTLQINLVSVISGTYL 115
Query: 116 CLEF 119
L++
Sbjct: 116 GLDY 119
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (107), Expect = 6e-06
Identities = 35/238 (14%), Positives = 66/238 (27%), Gaps = 42/238 (17%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR------TNSPWSHLLINHGVHCIQ 63
+ LVTG G +G+A+ LV++G +V + + +
Sbjct: 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYR 67
Query: 64 GDVVSKIDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHV 112
D+ ++ D+ GVD + A + + VN+
Sbjct: 68 CDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSIC 127
Query: 113 IEACLEFGIQRLVYVSTYNVVFGGKEIVN-----GNESLPYFPIDEHVDSYGRSKS--VA 165
+ +R I+N G+ LP Y +K A
Sbjct: 128 TREAYQSMKERN---------VDDGHIININSMSGHRVLPLS----VTHFYSATKYAVTA 174
Query: 166 EQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEP 223
L+ R + + R + P + + + A K +P
Sbjct: 175 LTEGLRQELREAQTHIR----ATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKP 228
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 45.4 bits (107), Expect = 7e-06
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 17/130 (13%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT---NSPWSHLLINHGVHCIQGDV 66
+ K ++TGG G +G VR GA +V D+ +++ + + DV
Sbjct: 5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDV 63
Query: 67 VSKIDVEKAAR-------GVDCVFHVASYGMSGKEML------QFGRVDEVNINGTCHVI 113
DV +D +F + + F RV ++N+ G V
Sbjct: 64 TKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVA 123
Query: 114 EACLEFGIQR 123
+ I
Sbjct: 124 KHAARVMIPA 133
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 44.6 bits (105), Expect = 1e-05
Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 27/173 (15%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL--INHGVHCIQGDVV 67
GKT ++TGG +G+ + V GA +V D + + + DV
Sbjct: 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLAD-VLDEEGAATARELGDAARYQHLDVT 61
Query: 68 SKIDVEKAAR-------GVDCVFHVASYGMSGKEML----QFGRVDEVNINGTCHVIEAC 116
+ D ++ VD + + A +F +V E+N+ G ++
Sbjct: 62 IEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTV 121
Query: 117 LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
+ GG IVN S SYG SK L
Sbjct: 122 IPAMKDA-----------GGGSIVN-ISSAAGLMGLALTSSYGASKWGVRGLS 162
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.5 bits (104), Expect = 1e-05
Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 16/124 (12%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--LINHGVHCIQGDVV 67
+ +VTG +G L +LV+ + R + L + + VH + V
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61
Query: 68 SKIDVEKAAR---------GVDCVFHVASYGMSGKEML-----QFGRVDEVNINGTCHVI 113
++ G+ + + A +S +VN +
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121
Query: 114 EACL 117
+ L
Sbjct: 122 QKLL 125
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.6 bits (105), Expect = 1e-05
Identities = 14/130 (10%), Positives = 39/130 (30%), Gaps = 23/130 (17%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT-------NSPWSHLLINHGVHCI 62
KT ++TG +G + + GA V + + V+ +
Sbjct: 4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSV 62
Query: 63 QGDVVSKIDVEKAAR-------GVDCVFHVASYGMSGK--------EMLQFGRVDEVNIN 107
DV ++ ++ +D + + A + + + + ++N+
Sbjct: 63 VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQ 122
Query: 108 GTCHVIEACL 117
+ +
Sbjct: 123 AVIEMTKKVK 132
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 45.0 bits (104), Expect = 1e-05
Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 29/221 (13%)
Query: 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL----------------- 53
G +V GG G+ G A L L ++ Y+V D + H
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS 59
Query: 54 ----LINHGVHCIQGDVVSKIDVEKA-----ARGVDCVFHVASYGMSGKEMLQFGRVDEV 104
L + GD+ + ++ V S S + +
Sbjct: 60 RWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHN 119
Query: 105 NINGTCHVIEACLEFGIQRLVY--VSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162
N+ GT +V+ A EFG + + + +I G ++ + + + ++
Sbjct: 120 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 179
Query: 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH 203
S + + + + +YG +
Sbjct: 180 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDET 220
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.2 bits (104), Expect = 1e-05
Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 23/130 (17%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP-------WSHLLINHGVHCI 62
K ++TG +G A + R GA +V + + V+ +
Sbjct: 4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSV 62
Query: 63 QGDVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEML--------QFGRVDEVNIN 107
DV + ++ +D + + A + + + +N+
Sbjct: 63 VADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLR 122
Query: 108 GTCHVIEACL 117
+ + +
Sbjct: 123 SVIALTKKAV 132
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 44.6 bits (103), Expect = 1e-05
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 15 LVTGGLGHVGSALCLELVRRGAYQVRAFD-LRTNSPWSHLL-INHGVHCIQGDVVSKIDV 72
+VTGG G +GS + L +G + D L+ + + +L+ +N + + D + +I
Sbjct: 3 IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMA 62
Query: 73 EKAARGVDCVFHVASYGM 90
+ V+ +FH +
Sbjct: 63 GEEFGDVEAIFHEGACSS 80
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 43.9 bits (103), Expect = 1e-05
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV 67
GI K LV +G A+ L + GA +V LL G + D+
Sbjct: 1 GIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARN-----EELLKRSGHRYVVCDLR 54
Query: 68 SKID-VEKAARGVDCVFHVASYGMSG 92
+D + + + VD + A +G
Sbjct: 55 KDLDLLFEKVKEVDILVLNAGGPKAG 80
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 43.1 bits (101), Expect = 3e-05
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
+ K L+TG +G A + GA ++ A D P G H + DV
Sbjct: 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACD-IEEGPLREAAEAVGAHPVVMDVADP 61
Query: 70 IDVEKAAR-------GVDCVFHVASYGMSG 92
VE+ +D V H A
Sbjct: 62 ASVERGFAEALAHLGRLDGVVHYAGITRDN 91
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.0 bits (101), Expect = 5e-05
Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 32/174 (18%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQV---RAFDLRTNSPWSHLL------INHGVH 60
+G+ LVTG G +G A L RGA V D + S I
Sbjct: 6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG 65
Query: 61 CIQGDVVSKIDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGT 109
+ S EK + +D V + A + + V++ G+
Sbjct: 66 KAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGS 125
Query: 110 CHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKS 163
V A + ++ I+ + + +Y +K
Sbjct: 126 FQVTRAAWDHMKKQ-----------NYGRIIMTASASGIYGNFGQA-NYSAAKL 167
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 42.7 bits (100), Expect = 5e-05
Identities = 18/153 (11%), Positives = 48/153 (31%), Gaps = 21/153 (13%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP-------WSHLLINHGVHCI 62
GK+ ++TG +G + + + GA QV + + ++ +
Sbjct: 3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAV 61
Query: 63 QGDVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEML------QFGRVDEVNINGT 109
DV + +D + + A ++ + + ++N
Sbjct: 62 VADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAV 121
Query: 110 CHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNG 142
+ + E I+ + + + G + +G
Sbjct: 122 IEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSG 154
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 42.3 bits (99), Expect = 6e-05
Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 15/123 (12%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP---WSHLLINHGVHCIQGDV 66
+GK ++TGG +G A+ + V GA +V ++ + + Q D
Sbjct: 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDS 63
Query: 67 VSKIDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEA 115
+ K V + + A ++ ++ ++ VN++G
Sbjct: 64 SDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRL 123
Query: 116 CLE 118
++
Sbjct: 124 GIQ 126
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 42.3 bits (99), Expect = 6e-05
Identities = 40/209 (19%), Positives = 73/209 (34%), Gaps = 28/209 (13%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVS 68
+GK LVTGG VG + L+ GA +V D+ + + ++ DV S
Sbjct: 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS 63
Query: 69 KIDVEKAAR-------GVDCVFHVASYGMSGKEML----QFGRVDEVNINGTCHVIEACL 117
+ D ++ + + A + G F R+ ++N + +
Sbjct: 64 EADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGI 123
Query: 118 EFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPF 177
+ GG I+N + PI+++ Y SK+ L ++
Sbjct: 124 AAMKE-----------TGGS-IINMASVSSWLPIEQY-AGYSASKAAVSALT-RAAALSC 169
Query: 178 KKNNRKCLYTCAVRPAAIYGPGEERHLPR 206
+K + P IY P + LP+
Sbjct: 170 RKQGYAIRVNS-IHPDGIYTPMMQASLPK 197
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 42.1 bits (97), Expect = 8e-05
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-------LINHGVHCIQG 64
L+ G G++G + + G + + + + G + + G
Sbjct: 4 SRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLESFKASGANIVHG 62
Query: 65 DVVSKIDVEKAARGVDCVFHVASYGM 90
+ + +A + VD V
Sbjct: 63 SIDDHASLVEAVKNVDVVISTVGSLQ 88
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.6 bits (97), Expect = 9e-05
Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 15/215 (6%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
++ LVTGG +G A+ L G +V + +P G+ ++ DV
Sbjct: 6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAP-------KGLFGVEVDVTDS 57
Query: 70 IDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
V++A V+ +S + + + VI A L + S
Sbjct: 58 DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASR 117
Query: 130 YNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCA 189
++ + I +Y SK+ + K N
Sbjct: 118 SMQRNKFGRMIFIGSVSGLWGIGNQA-NYAASKAGVIGMARSIARELSKANVT----ANV 172
Query: 190 VRPAAIYGPGEERHLPRIVSLAKLGLVPFK-IGEP 223
V P I R L + L +P K +G P
Sbjct: 173 VAPGYIDTDM-TRALDERIQQGALQFIPAKRVGTP 206
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.6 bits (97), Expect = 9e-05
Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 26/222 (11%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVS 68
GK LV+GG +G++ +V GA +V D+ + + + DV
Sbjct: 5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ 63
Query: 69 KIDVEKAAR-------GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121
+ A G+ + + A +L G +++ + +++ G+
Sbjct: 64 PAQWKAAVDTAVTAFGGLHVLVNNA-------GILNIGTIEDYALTEWQRILD-VNLTGV 115
Query: 122 QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNN 181
+ + G+ + S+ Y +K L KS +
Sbjct: 116 FLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLT-KSTALELGPSG 174
Query: 182 RKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEP 223
+ ++ P + P + +P + LG + EP
Sbjct: 175 IRV---NSIHPGLVKTPMTD-WVPEDIFQTALG----RAAEP 208
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 41.2 bits (96), Expect = 1e-04
Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 23/148 (15%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-----INHGVHCIQG 64
+ KT LVTGG +G A+ E GA + R + L V
Sbjct: 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCA-RNEYELNECLSKWQKKGFQVTGSVC 64
Query: 65 DVVSKIDVEKAARGV--------DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHV 112
D + + EK + V D + + S F N+ H+
Sbjct: 65 DASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHL 124
Query: 113 IEACL----EFGIQRLVYVSTYNVVFGG 136
+ G ++++S+ V
Sbjct: 125 SQLAHPLLKASGCGNIIFMSSIAGVVSA 152
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 40.8 bits (95), Expect = 2e-04
Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 12/219 (5%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS--PWSHLLINHG--VHCIQGD 65
E K LVTG +G + L + + V S + + G GD
Sbjct: 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGD 67
Query: 66 VVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125
V K ++ + + ++ + + + + V+ L
Sbjct: 68 VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 127
Query: 126 YVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCL 185
+S + I+N + + +Y SK+ KS + N
Sbjct: 128 PISKRMINNRYGRIINISSIVGLTGNVGQA-NYSSSKAGVIGFT-KSLAKELASRNITV- 184
Query: 186 YTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFK-IGEP 223
A+ P I ++ +I + +P +G P
Sbjct: 185 --NAIAPGFISSDMTDKISEQIKK-NIISNIPAGRMGTP 220
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 40.9 bits (95), Expect = 2e-04
Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 12/221 (5%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-----INHGVHCIQG 64
EGK ++TG +G ++ + A +V + +L + ++G
Sbjct: 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKG 64
Query: 65 DVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
DV + DV + F ++ + E++++ VI+ L
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124
Query: 125 VYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKC 184
Y V K V S+ Y SK +L+ ++ +
Sbjct: 125 REAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKG-GMKLMTETLALEYAPKG--- 180
Query: 185 LYTCAVRPAAIYGPGEERHLPRIVSLAKL-GLVPFK-IGEP 223
+ + P AI P A + ++P IGEP
Sbjct: 181 IRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEP 221
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 40.8 bits (95), Expect = 2e-04
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 17/130 (13%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSHLLINHGVHC--IQGD 65
EG T LVTGG +G + EL GA V + G D
Sbjct: 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCD 65
Query: 66 VVSKIDVEKAAR--------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVI 113
+ S+ + ++ ++ + + A + + + + + +N H+
Sbjct: 66 LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLS 125
Query: 114 EACLEFGIQR 123
F
Sbjct: 126 VLAHPFLKAS 135
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVS 68
+GKT L+TG +G A VR GA +V D+ + + I I DV
Sbjct: 4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD 62
Query: 69 KIDVEKAAR-------GVDCVFHVASYGMSGKEML----QFGRVDEVNINGTCHVIEAC 116
+ +++ +D + + A+ + + R+ +N++GT +++A
Sbjct: 63 QASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAV 121
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 40.3 bits (93), Expect = 3e-04
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
+++G +G+A L G Q+ D+R + L G DV
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIADLSTAEGRKQAIADV----- 55
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEAC 116
+ K ++G+D + A G K G V VN G +++A
Sbjct: 56 LAKCSKGMDGLVLCAGLGPQTKV---LGNVVSVNYFGATELMDAF 97
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 27/244 (11%), Positives = 61/244 (25%), Gaps = 38/244 (15%)
Query: 2 HLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLLINHGVH 60
L E+ ++ K+ + G G G L E++ +G + +V R + N
Sbjct: 5 KLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQE 64
Query: 61 CIQGDVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120
+ + + + + V+ + E G
Sbjct: 65 VVDFEKLDDYASAF-----QGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGG 119
Query: 121 IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKN 180
+ +S+ ++ G ++ K
Sbjct: 120 CKHFNLLSSKGA--------------DKSSNFLYLQVKGEVEA--------------KVE 151
Query: 181 NRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240
K RP + +E + G +P + V +V A++
Sbjct: 152 ELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWA----SGHSVPVVTVVRAML 207
Query: 241 LASM 244
+
Sbjct: 208 NNVV 211
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 39.7 bits (92), Expect = 4e-04
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 19/128 (14%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP--WSHLLINHGVHC--IQG 64
++G T LVTGG +G A+ EL GA +V + G++
Sbjct: 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVC 62
Query: 65 DVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
D++S+ + +K + V VF G+++ + N + + +F +
Sbjct: 63 DLLSRTERDKLMQTVAHVFD--------------GKLNILVNNAGVVIHKEAKDFTEKDY 108
Query: 125 VYVSTYNV 132
+ N
Sbjct: 109 NIIMGTNF 116
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.4 bits (90), Expect = 4e-04
Identities = 28/243 (11%), Positives = 53/243 (21%), Gaps = 47/243 (19%)
Query: 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71
K L+ G G G L ++ + + +++ ++D
Sbjct: 3 KRVLLAGATGLTGEHLLDRILSEP-TLAKVI-APARKALAEHPRLDNPVGPLAELLPQLD 60
Query: 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131
+ + F VD + +
Sbjct: 61 GSI----DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA 116
Query: 132 VVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVR 191
V G R
Sbjct: 117 KSSIFYNRVKGELEQALQEQGWP-------------------------------QLTIAR 145
Query: 192 PAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIP 251
P+ ++GP EE L I++ ++P K I +L AL L++
Sbjct: 146 PSLLFGPREEFRLAEILAAPIARILPGKY-------HGIEACDLARALWRL---ALEEGK 195
Query: 252 GQK 254
G +
Sbjct: 196 GVR 198
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 39.7 bits (92), Expect = 4e-04
Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 11/95 (11%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL--INHGVHCIQGDVV 67
GKT LVTG +G A R GA + A D R + + + + DV
Sbjct: 4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVD-REERLLAEAVAALEAEAIAVVADVS 61
Query: 68 SKIDVEKAAR-------GVDCVFHVASYGMSGKEM 95
VE + V H A S
Sbjct: 62 DPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSW 96
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 39.3 bits (91), Expect = 6e-04
Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 8/165 (4%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-----INHGVHCIQG 64
EGK LVTG +G + +EL RRG +V + ++ C++
Sbjct: 17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKA 75
Query: 65 DVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
+V D+ + +F S ++ FG V +V V
Sbjct: 76 NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVA 135
Query: 125 VYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169
+ + G ++ Y SK E
Sbjct: 136 REAYKHLEIGGR--LILMGSITGQAKAVPKHAVYSGSKGAIETFA 178
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 38.9 bits (90), Expect = 8e-04
Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 19/125 (15%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL------INHGVHCIQ 63
KT +VTGG +G A + GA V R+ + + Q
Sbjct: 8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIY-RSAADAVEVTEKVGKEFGVKTKAYQ 65
Query: 64 GDVVSKIDVEKAAR-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHV 112
DV + V K + + + A + F V +VN+ G +
Sbjct: 66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNT 125
Query: 113 IEACL 117
A
Sbjct: 126 CRAVA 130
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 38.1 bits (88), Expect = 0.001
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS--PWSHLLINHG 58
M S+N ++GK ++TG +G + + GA V D+ ++ + G
Sbjct: 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG 59
Query: 59 --VHCIQGDVVSKIDVEKAAR-------GVDCVFHVASYGMSG 92
+ D+ S+ ++ A VD + + A G
Sbjct: 60 GQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK 102
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 38.1 bits (88), Expect = 0.002
Identities = 38/229 (16%), Positives = 65/229 (28%), Gaps = 26/229 (11%)
Query: 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP---WSHLLINHG--VHCIQ 63
+ G+ LVTGG +G + L G V L +G +
Sbjct: 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFR 61
Query: 64 GDVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEAC 116
DV + +V+K +D V + A + +E ++ VIE
Sbjct: 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGIN-------RRHPAEEFPLDEFRQVIEVN 114
Query: 117 LEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRP 176
L + I+N ++ +Y SK L K+ +
Sbjct: 115 LFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLT-KALAKE 173
Query: 177 FKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAK-LGLVPFK-IGEP 223
+ + + + P E L L +P G P
Sbjct: 174 WGRYGIRV---NVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVP 219
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 0.002
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK 69
+GK ++T +G A L R GA +V A D S L G+ DV K
Sbjct: 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATD-INESKLQELEKYPGIQTRVLDVTKK 62
Query: 70 IDVEKAARGVDCVFH-VASYGMSGKEML------QFGRVDEVNINGTCHVIEACLEFGIQ 122
+++ A V+ + G + + +N+ +I+A L +
Sbjct: 63 KQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLA 122
Query: 123 R 123
+
Sbjct: 123 Q 123
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 37.4 bits (86), Expect = 0.002
Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 17/124 (13%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL-----INHGVHCIQG 64
GK L TG +G + +EL RRGA V ++ ++ + IQ
Sbjct: 5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQA 63
Query: 65 DVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEML----QFGRVDEVNINGTCHVI 113
D+ +V G+D V + + E+ F +V +N G V
Sbjct: 64 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVA 123
Query: 114 EACL 117
+ L
Sbjct: 124 QQGL 127
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 37.4 bits (86), Expect = 0.003
Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 13/222 (5%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN---SPWSHLLINHG--VHCIQG 64
+GK +TGG +G + L GA Q + + + + G VH IQ
Sbjct: 24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQC 82
Query: 65 DVVSKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRL 124
DV V+ + V + ++ + ++ N + + L
Sbjct: 83 DVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVT 142
Query: 125 VYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKC 184
+ + + ++ V +K+ E + KS + K +
Sbjct: 143 LEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMS-KSLAAEWGKYGMRF 201
Query: 185 LYTCAVRPAAIYGPGEERHLPRIVSLAK--LGLVPFK-IGEP 223
++P I G L + K +G +P +G
Sbjct: 202 ---NVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTV 240
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 37.0 bits (85), Expect = 0.003
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 14/102 (13%)
Query: 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR------TNSPWSHLLINHGVHCIQ 63
+ L+TGG +G A + L GA ++ D+ + + + V
Sbjct: 3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 61
Query: 64 GDVVSKIDVEKAAR-------GVDCVFHVASYGMSGKEMLQF 98
DV + VE +D F+ A F
Sbjct: 62 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESF 103
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 35.8 bits (82), Expect = 0.003
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 3/112 (2%)
Query: 19 GLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR 77
GLG VGS+ L+ +G A ++ D+ L +
Sbjct: 7 GLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLK 66
Query: 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129
G D V A G+ K ++ N + ++ +V V T
Sbjct: 67 GSDVVIVAA--GVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.96 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.96 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.96 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.95 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.93 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.92 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.89 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.82 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.82 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.81 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.8 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.8 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.8 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.79 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.79 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.79 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.79 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.78 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.78 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.78 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.77 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.77 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.77 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.77 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.77 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.77 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.76 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.76 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.75 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.75 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.75 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.74 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.74 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.74 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.73 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.73 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.73 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.73 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.72 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.72 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.72 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.71 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.71 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.7 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.7 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.7 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.69 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.68 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.68 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.68 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.67 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.66 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.65 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.65 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.65 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.65 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.64 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.63 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.61 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.6 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.56 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.56 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.56 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.56 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.48 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.46 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.45 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.43 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.43 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.39 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.3 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.23 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.21 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.17 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.57 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.33 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.11 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.07 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.96 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.91 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.88 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.87 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.82 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.79 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.64 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.6 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.56 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.53 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.45 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.39 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.39 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.37 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.36 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.36 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.35 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.32 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.31 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.26 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.22 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.21 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.19 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.18 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.15 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.13 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.11 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.1 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.1 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.04 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.04 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.03 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.89 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.87 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.74 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.72 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.71 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.7 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.64 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.62 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.57 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.56 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.51 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.43 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.41 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.37 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.35 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.35 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.33 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.28 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.21 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.15 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.14 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.1 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.07 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.02 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.01 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.99 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.98 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.83 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.74 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.73 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.66 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.42 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.31 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.25 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 95.24 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.22 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.14 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.13 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.12 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.1 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.04 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.97 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.88 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 94.83 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.82 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.78 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.66 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.63 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.57 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.53 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.5 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 94.49 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.44 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.4 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.31 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.3 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.27 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.24 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.23 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.16 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 94.13 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 94.12 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 94.0 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.93 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 93.83 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 93.82 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.8 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.63 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 93.59 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.56 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.48 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 93.48 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.38 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.38 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 93.35 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.23 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.22 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.1 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.06 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 93.03 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.02 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.97 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.91 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.88 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.83 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 92.71 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 92.51 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.37 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 92.25 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.93 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 91.72 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 91.69 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.66 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 91.51 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.49 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 91.33 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.28 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 91.22 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 91.03 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 91.02 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 90.96 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.85 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 90.64 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.51 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 90.5 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.45 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 90.42 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 90.41 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.36 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.33 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 90.25 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 89.57 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 89.52 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 89.37 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 88.76 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 88.73 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 88.66 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 88.65 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 88.52 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 87.9 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 87.45 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 87.0 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 87.0 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 86.96 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 86.29 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 85.87 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.57 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 85.48 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 85.3 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 85.06 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 84.57 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 84.33 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 84.23 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 84.1 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 83.95 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 83.8 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 83.5 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 83.48 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 83.41 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 83.39 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 83.27 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 83.2 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 83.18 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 82.45 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 82.29 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 82.22 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 82.07 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 82.07 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 81.83 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 81.69 | |
| d1q7ea_ | 417 | Hypothetical protein YfdW {Escherichia coli [TaxId | 81.42 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 81.26 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 80.93 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 80.73 |
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=2.9e-50 Score=397.71 Aligned_cols=304 Identities=23% Similarity=0.330 Sum_probs=255.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc-----eEEEEecCCCCc----ccccccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY-----QVRAFDLRTNSP----WSHLLINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~-----~V~~l~r~~~~~----~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
|||||||||||||++|+++|+++|++ +|+.+|+..... ........+++++.+|+.+.........++|+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v 80 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence 58999999999999999999999985 245555433221 112234567999999999999999999999999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhH
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
+|+|+.........++....++|+.||.|++++|++.+++++||+||.++ ||.....+.+|+.|..|. ++||.||
T Consensus 81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~-yg~~~~~~~~E~~~~~p~----~~Y~~sK 155 (322)
T d1r6da_ 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQV-YGSIDSGSWTESSPLEPN----SPYAASK 155 (322)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGG-GCCCSSSCBCTTSCCCCC----SHHHHHH
T ss_pred EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeeccee-ecCCCCCCCCCCCCCCCC----CHHHHHH
Confidence 99999877666677788889999999999999999999999999999998 566666778999998886 8899999
Q ss_pred HHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHH
Q 011770 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALI 240 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~ 240 (478)
..+|.+++.+.+ .++++++++||++||||++. +.++.+++.+..|..+.++|+|++.+||+||+|+|+++.
T Consensus 156 ~~~E~~~~~~~~-------~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~ 228 (322)
T d1r6da_ 156 AGSDLVARAYHR-------TYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIA 228 (322)
T ss_dssp HHHHHHHHHHHH-------HHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHH
Confidence 999999998864 57999999999999999875 478899999999998888999999999999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccc
Q 011770 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRW 320 (478)
Q Consensus 241 ~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (478)
.++++ ...|++||+++++++++.|+++.+.+.+|.+.+..... .
T Consensus 229 ~~~~~------------~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~----------------------~-- 272 (322)
T d1r6da_ 229 LVLAG------------GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKV----------------------A-- 272 (322)
T ss_dssp HHHHH------------CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEE----------------------C--
T ss_pred HHHhC------------CCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeec----------------------C--
Confidence 99984 24578999999999999999999999999875432110 0
Q ss_pred cCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 321 WLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 321 ~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..+. . .....+|++|++++|||+|+++++|||+++++||++++
T Consensus 273 --~~~~----~----~~~~~~d~~k~~~~lg~~p~~~~eegI~~~i~w~~~n~ 315 (322)
T d1r6da_ 273 --DRKG----H----DLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENR 315 (322)
T ss_dssp --CCTT----C----CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCH
T ss_pred --CCCC----C----CceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhH
Confidence 1110 0 11235799999999999999999999999999999865
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-50 Score=402.22 Aligned_cols=320 Identities=19% Similarity=0.210 Sum_probs=241.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc---------cccccCCCeEEEEecCCCHHHHHHHhcC--cC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW---------SHLLINHGVHCIQGDVVSKIDVEKAARG--VD 80 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~---------~~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D 80 (478)
|+|||||||||||++|+++|+++|++ |+++||..+... ......++++++++|++|.+++++++++ +|
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYE-VHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCE-EEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 78999999999999999999999998 999998654210 1122346799999999999999999985 59
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC---eEEEEeccceeeCCccccCCCCCCCCCCCCccCCc
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ---RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS 157 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~---r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~ 157 (478)
+|||+||....+.+..++..++++|+.||.||+++|++.+++ ||||+||.+| ||.....+.+|++|..|. ++
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~v-YG~~~~~~~~E~~~~~P~----~~ 155 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSEL-YGLVQEIPQKETTPFYPR----SP 155 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGG-GTTCCSSSBCTTSCCCCC----SH
T ss_pred EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhh-hCCCCCCCcCCCCCCCCC----Ch
Confidence 999999987777777788889999999999999999998754 7999999998 666666789999988875 89
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHHHHHcC-CCCeeeCCCCcccccee
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVSLAKLG-LVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~~~~~g-~~~~~~g~g~~~~~~v~ 231 (478)
|+.||.++|++++.+.. .++++++++||++||||+... .+...+..+..+ .....+|++++.+||+|
T Consensus 156 Y~~sK~~~E~~~~~~~~-------~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~ 228 (357)
T d1db3a_ 156 YAVAKLYAYWITVNYRE-------SYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGH 228 (357)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEE
T ss_pred HHHHHHHHHHHHHHHHH-------HhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeeccee
Confidence 99999999999998874 568999999999999997532 233344444444 44566799999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHH
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYS 311 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~ 311 (478)
|+|+|+++..++++ ..+++|||++|+++|+.|+++.+.+.+|...+....+....
T Consensus 229 v~D~~~a~~~~~~~-------------~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~------------ 283 (357)
T d1db3a_ 229 AKDYVKMQWMMLQQ-------------EQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEK------------ 283 (357)
T ss_dssp HHHHHHHHHHTTSS-------------SSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCE------------
T ss_pred echHHHHHHHHHhC-------------CCCCeEEECCCCceehHHHHHHHHHHhCCcccccccccccc------------
Confidence 99999999988762 34679999999999999999999999986544322211100
Q ss_pred hhhhccccccCCCCCCcHHHh---------hhh-cceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHH
Q 011770 312 VLYPWLNRWWLPQPLILPAEV---------YKV-GVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQD 371 (478)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~---------~~~-~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~ 371 (478)
.......+...|...+... +.. .....+|++|++++|||+|+++++|+|+++++++.+
T Consensus 284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~ 351 (357)
T d1db3a_ 284 --GIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLE 351 (357)
T ss_dssp --EEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred --chhhhhhcccccccccCceeEeeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHH
Confidence 0000000001111111000 000 012246999999999999999999999999876544
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.9e-49 Score=398.26 Aligned_cols=312 Identities=21% Similarity=0.251 Sum_probs=245.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCc----ccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSP----WSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHV 85 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~----~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHl 85 (478)
|||||||||||||++|+++|+++|++.|+++|+..... .......++++++++|++|.+.+.++++ ++|+||||
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence 58999999999999999999999998456676543321 1122345689999999999999999887 58999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC---------CCeEEEEeccceeeCCccccCC----------CCCC
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG---------IQRLVYVSTYNVVFGGKEIVNG----------NESL 146 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~---------v~r~V~~SS~~v~~g~~~~~~~----------~E~~ 146 (478)
||....+.+..++...+++|+.||.|++++|++.+ +++|||+||.+|| |.....+. .|+.
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vy-g~~~~~~~~~~~~~~~~~~e~~ 159 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVY-GDLPHPDEVENSVTLPLFTETT 159 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGG-CCCCCGGGSCTTSCCCCBCTTS
T ss_pred ccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceee-CCCccCCccccccCCCCcccCC
Confidence 99876666677888999999999999999999875 4589999999994 43322222 2333
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~ 224 (478)
+..| .++||.||.++|++++.+.. .++++++++||++||||++. ++++.+++.+.+|+.+.++|+|+
T Consensus 160 ~~~p----~s~Yg~sK~~~E~~~~~~~~-------~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~ 228 (361)
T d1kewa_ 160 AYAP----SSPYSASKASSDHLVRAWRR-------TYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGD 228 (361)
T ss_dssp CCCC----CSHHHHHHHHHHHHHHHHHH-------HHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSC
T ss_pred CCCC----CCHHHHHHHHHHHHHHHHHH-------HhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEeCCCC
Confidence 3444 48899999999999998875 57999999999999999874 47899999999999888899999
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHH
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGK 304 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~ 304 (478)
+.|||+||+|+|+|+..+++. ...|++|||+++++.++.|+++.+.+.++...+...-....
T Consensus 229 ~~r~~i~v~D~a~ai~~~~~~------------~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~------ 290 (361)
T d1kewa_ 229 QIRDWLYVEDHARALHMVVTE------------GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQ------ 290 (361)
T ss_dssp CEEEEEEHHHHHHHHHHHHHH------------CCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGG------
T ss_pred eEEeCEEHHHHHHHHHHHHhc------------CCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccc------
Confidence 999999999999999999984 23577999999999999999999988776543321100000
Q ss_pred HHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccC
Q 011770 305 VFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKR 374 (478)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~ 374 (478)
..... ..|. + ......|++|++++|||+|+++++|+|+++++||++++.
T Consensus 291 ----------~~~~~---~~~~----~----~~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~ 339 (361)
T d1kewa_ 291 ----------ITYVA---DRPG----H----DRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQ 339 (361)
T ss_dssp ----------EEEEC---CCTT----C----CCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHH
T ss_pred ----------eeecC---CCCC----C----CceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 00000 0110 0 123357999999999999999999999999999988743
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.9e-50 Score=393.96 Aligned_cols=296 Identities=24% Similarity=0.276 Sum_probs=237.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+|||||||||||||++|+++|+++|++ |+++|+..+..... ......++....|+ ++.++.++|+||||||
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~~~d~VihlAa 74 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHE-VTVVDNFFTGRKRNVEHWIGHENFELINHDV-----VEPLYIEVDQIYHLAS 74 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCGGGTGGGTTCTTEEEEECCT-----TSCCCCCCSEEEECCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCCcCCHHHHHHhcCCCceEEEehHH-----HHHHHcCCCEEEECcc
Confidence 479999999999999999999999999 99999754432211 11223345555554 4456678999999999
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCC-----CCCCCCCccCCchHhhH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNES-----LPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~-----~p~~p~~~~~~~Y~~sK 162 (478)
....+.+..++...+++|+.||.|++++|++.++ |+||+||.+|| +.....+.+|+ .|..| .++|+.||
T Consensus 75 ~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy-~~~~~~~~~e~~~~~~~~~~p----~~~Y~~sK 148 (312)
T d2b69a1 75 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVY-GDPEVHPQSEDYWGHVNPIGP----RACYDEGK 148 (312)
T ss_dssp CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGG-BSCSSSSBCTTCCCBCCSSST----THHHHHHH
T ss_pred cCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChhee-cCCCCCCCCccccCCCCCCCC----ccHHHHHH
Confidence 7665556667888999999999999999999997 89999999995 44433444443 34444 38899999
Q ss_pred HHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC----CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 163 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE----RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~----~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
.++|.++..+.. .++++++++||++||||++. ..++.++..+..|+.+.++|+|++.+||+|++|++++
T Consensus 149 ~~~E~~~~~~~~-------~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~ 221 (312)
T d2b69a1 149 RVAETMCYAYMK-------QEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNG 221 (312)
T ss_dssp HHHHHHHHHHHH-------HHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHH
T ss_pred HHHHHHHHHHHH-------HhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHH
Confidence 999999998864 57999999999999999864 3678899999999999899999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccc
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLN 318 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~ 318 (478)
++.+++. ..+++||+++++++++.|+++.+.+.+|.+.+....|.. .
T Consensus 222 ~~~~~~~-------------~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------------~ 268 (312)
T d2b69a1 222 LVALMNS-------------NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA--------------------Q 268 (312)
T ss_dssp HHHHHTS-------------SCCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC--------------------T
T ss_pred HHHHHhh-------------ccCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCC--------------------C
Confidence 9988863 245689999999999999999999999987654332210 0
Q ss_pred cccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 319 RWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 319 ~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..+ .....|++|++++|||+|+++++++|+++++||+++.
T Consensus 269 ----~~~-----------~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~~~~ 308 (312)
T d2b69a1 269 ----DDP-----------QKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 308 (312)
T ss_dssp ----TCC-----------CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred ----CCC-----------CeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Confidence 111 1235699999999999999999999999999998753
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.3e-48 Score=387.07 Aligned_cols=311 Identities=21% Similarity=0.216 Sum_probs=257.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---------ccccCCCeEEEEecCCCHHHHHHHhcCc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---------HLLINHGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---------~~~~~~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
+++|+|||||||||||++|+++|+++|++ |+++|+....... ......+++++.+|+.|...+.....+.
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~ 92 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQK-VVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 92 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence 45689999999999999999999999999 9999985543211 1223467899999999999999999999
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchH
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYG 159 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~ 159 (478)
+.|+|+++......+..++...+++|+.||.|++++|.+++++++||+||.+| ||..+..+.+|+.|..|. +.|+
T Consensus 93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~v-yg~~~~~~~~E~~~~~p~----~~Y~ 167 (341)
T d1sb8a_ 93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSST-YGDHPGLPKVEDTIGKPL----SPYA 167 (341)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGG-GTTCCCSSBCTTCCCCCC----SHHH
T ss_pred cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEccccee-eCCCCCCCccCCCCCCCC----Ccch
Confidence 99999999877666777888899999999999999999999999999999999 566667788999998886 8999
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
.||.++|+++..+.. ..+++++++||++||||++. ..++.++..+..|+++.++|+|++.+||+||+
T Consensus 168 ~sK~~~E~~~~~~~~-------~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~ 240 (341)
T d1sb8a_ 168 VTKYVNELYADVFSR-------CYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIE 240 (341)
T ss_dssp HHHHHHHHHHHHHHH-------HHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHH
T ss_pred HHHHHHHHHHHHHHH-------HhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEe
Confidence 999999999988764 57899999999999999764 25677888899999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhh
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVL 313 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~ 313 (478)
|+|.|+..++.. .....+++||++++++.|+.|+++.+.+.++.+........
T Consensus 241 D~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~----------------- 293 (341)
T d1sb8a_ 241 NTVQANLLAATA----------GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREP----------------- 293 (341)
T ss_dssp HHHHHHHHHHTC----------CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCC-----------------
T ss_pred ccchhhhhhhhc----------cccccceeeeecccccchHHHHHHHHHHHhccccccccccc-----------------
Confidence 999999998873 22356789999999999999999999998875532211000
Q ss_pred hhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 314 YPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
... ..+ +.+. .....|++|++++|||+|+++++++|+++++||++.
T Consensus 294 --~~~----~~~---~~~~----~~~~~d~~k~~~~LGw~p~~sl~~gi~~ti~wy~~~ 339 (341)
T d1sb8a_ 294 --VYR----DFR---EGDV----RHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 339 (341)
T ss_dssp --EEE----CCC---TTCC----SBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred --ccc----CCC---CCCc----CeeeeCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHh
Confidence 000 000 0010 123469999999999999999999999999999874
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-48 Score=384.71 Aligned_cols=309 Identities=20% Similarity=0.206 Sum_probs=244.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----ccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFH 84 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViH 84 (478)
|||||||||||||++|+++|+++|++ |+++||....... ......+++++++|++|.+.+.++++ ++|+|||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH 79 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHD-VIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 57999999999999999999999999 9999875443211 12234679999999999999999998 7999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHH
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~ 164 (478)
+||....+.+..++...+++|+.||.|++++|++.+++++||+||.+||.+.......+|+.+..|. ++|+.+|..
T Consensus 80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~----~~Y~~sK~~ 155 (338)
T d1udca_ 80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQ----SPYGKSKLM 155 (338)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCS----SHHHHHHHH
T ss_pred CCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCc----chHHHHHhh
Confidence 9998766666778889999999999999999999999999999999985444433333334344453 899999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------------CcHHHHHHHHHcC-CCCeeeCC------CCc
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------------RHLPRIVSLAKLG-LVPFKIGE------PSV 225 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------------~~~~~~i~~~~~g-~~~~~~g~------g~~ 225 (478)
+|+++.++... ..+++++++||+++|||++. ..++.++..+..+ .++.++|+ |++
T Consensus 156 ~e~~~~~~~~~------~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~ 229 (338)
T d1udca_ 156 VEQILTDLQKA------QPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229 (338)
T ss_dssp HHHHHHHHHHH------STTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSC
T ss_pred hhHHHHHHHhh------ccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCc
Confidence 99999866532 46899999999999998653 2445566555443 34445554 788
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHH
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKV 305 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~ 305 (478)
.+||+||+|++.++..+...... ...+++||+++++++|+.|+++.+.+.+|.+.+....|.
T Consensus 230 ~rd~i~v~D~~~~~~~~~~~~~~---------~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~--------- 291 (338)
T d1udca_ 230 VRDYIHVMDLADGHVVAMEKLAN---------KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR--------- 291 (338)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTT---------CCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECC---------
T ss_pred eeeEEEEeehhhhcccccccccc---------ccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCC---------
Confidence 89999999999998887764333 245679999999999999999999999998765543221
Q ss_pred HHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 306 FSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.| .+. ....+|++|++++|||+|+++++++|+++++|+++++++
T Consensus 292 ------------------~~----~~~----~~~~~d~~k~~~~lgwkp~~~l~egi~~ti~w~~~~~~~ 335 (338)
T d1udca_ 292 ------------------RE----GDL----PAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQG 335 (338)
T ss_dssp ------------------CT----TCC----SBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ------------------CC----CCC----CEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhchhh
Confidence 11 111 123479999999999999999999999999999998664
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.7e-46 Score=374.04 Aligned_cols=300 Identities=19% Similarity=0.140 Sum_probs=242.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
++|||||||||||||++|+++|+++|++ |+++|+.+... ........++..+|++|.+.+.++++++|+|||+|+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~-V~~~d~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~~ 90 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHY-VIASDWKKNEH--MTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADM 90 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCSS--SCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeCCCccc--hhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccccc
Confidence 4678999999999999999999999998 99999876543 22334567889999999999999999999999999865
Q ss_pred CCch-hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCC-------CCCCCCCCCCccCCchHhh
Q 011770 90 MSGK-EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNG-------NESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 90 ~~~~-~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~-------~E~~p~~p~~~~~~~Y~~s 161 (478)
.... ....+.....+|+.||.+++++|++++++|+||+||..+| +.....+. +|..|..|. ++|+.|
T Consensus 91 ~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~-~~~~~~~~~~~~~~~~e~~~~~p~----~~Yg~s 165 (363)
T d2c5aa1 91 GGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIY-PEFKQLETTNVSLKESDAWPAEPQ----DAFGLE 165 (363)
T ss_dssp CCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGS-CGGGSSSSSSCEECGGGGSSBCCS----SHHHHH
T ss_pred ccccccccccccccccccchhhHHHHhHHhhCccccccccccccc-cccccccccccccccccCCcCCCC----CHHHHH
Confidence 4433 2456677889999999999999999999999999999984 43332222 234444554 889999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-------cHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-------HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-------~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
|.++|++++.+.+ .++++++++||+++|||++.. ...........+.....+|+|.+.+||+|++|
T Consensus 166 K~~~E~~~~~~~~-------~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 238 (363)
T d2c5aa1 166 KLATEELCKHYNK-------DFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 238 (363)
T ss_dssp HHHHHHHHHHHHH-------HHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred HHHHHHHHHHHHH-------HhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhH
Confidence 9999999998864 579999999999999998642 12233344556666778899999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhh
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLY 314 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~ 314 (478)
+++++..+++. ..+++||+++++++++.|+++.+.+.+|.+.+....|.
T Consensus 239 ~~~~~~~~~~~-------------~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~------------------ 287 (363)
T d2c5aa1 239 CVEGVLRLTKS-------------DFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG------------------ 287 (363)
T ss_dssp HHHHHHHHHHS-------------SCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC------------------
T ss_pred HHHHHHHHHhC-------------CCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCC------------------
Confidence 99999988872 35679999999999999999999999998876544331
Q ss_pred hccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 315 PWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
|.. ......|++|++++|||+|+++++++|+++++||+++.
T Consensus 288 ----------~~~--------~~~~~~d~ska~~~LGw~p~~sleegi~~ti~w~~~~~ 328 (363)
T d2c5aa1 288 ----------PEG--------VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQI 328 (363)
T ss_dssp ----------CCC--------CSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred ----------CCC--------ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 110 11235799999999999999999999999999997753
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-46 Score=374.40 Aligned_cols=325 Identities=17% Similarity=0.179 Sum_probs=249.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHH-HhcCcCEEEEcccCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK-AARGVDCVFHVASYGM 90 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~-~l~~~D~ViHlAa~~~ 90 (478)
|||||||||||||++|+++|+++|+.+|+++|+..+.. ......++++++++|+++.+++.+ +.+++|+|||+|+...
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~-~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~~ 79 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI-SRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIAT 79 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGG-GGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcch-hhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccccc
Confidence 58999999999999999999999963499998865422 233446789999999998766554 6778999999999877
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCC---CCCCCCCccCCchHhhHHHHHH
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNES---LPYFPIDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~---~p~~p~~~~~~~Y~~sK~~aE~ 167 (478)
......++...+++|+.||.|++++|.+.++ +.+|+||..+| +.......+|. .+..|...+.+.|+.||.++|+
T Consensus 80 ~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E~ 157 (342)
T d2blla1 80 PIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVY-GMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDR 157 (342)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGG-BTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHH
T ss_pred ccccccCCccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccccCCCcchhhhcccchhh
Confidence 6666677788999999999999999999997 67889998885 44333333333 3334444556889999999999
Q ss_pred HHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC----------cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER----------HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~----------~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
++..+.+ ..+++++++||+.+|||.... .++.++..+..|..+.++|+|++.++|+|++|+|+
T Consensus 158 ~~~~~~~-------~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~ 230 (342)
T d2blla1 158 VIWAYGE-------KEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIE 230 (342)
T ss_dssp HHHHHHH-------HHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHH
T ss_pred hhhhhhc-------ccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccc
Confidence 9998875 578999999999999996432 36778888889999989999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCCC-CCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhc
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDGF-PINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPW 316 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~-~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~ 316 (478)
++..+++.. .....|++|||++++ ++|+.|+++.+.+.+|.......+|.......
T Consensus 231 a~~~~~~~~---------~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-------------- 287 (342)
T d2blla1 231 ALYRIIENA---------GNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV-------------- 287 (342)
T ss_dssp HHHHHHHCG---------GGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEE--------------
T ss_pred eeeeehhhc---------cccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccce--------------
Confidence 999999842 224568999998775 47999999999999998766555442110000
Q ss_pred cccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 317 LNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 317 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.. ..... .. ..........|++|++++|||+|+++++|+|+++++||+++...
T Consensus 288 ~~----~~~~~-~~-~~~~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~~ 340 (342)
T d2blla1 288 VE----SSSYY-GK-GYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (342)
T ss_dssp C------------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred ec----ccccc-cc-ccccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcCC
Confidence 00 00000 00 00001122469999999999999999999999999999887653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=3.8e-46 Score=371.75 Aligned_cols=303 Identities=21% Similarity=0.252 Sum_probs=244.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC--CCc-cc--ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT--NSP-WS--HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~--~~~-~~--~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
||+|||||||||||++|+++|+++|++ |.++.+.. ... .. ......+++++.+|++|.+.+.++++++|.|+|+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~-v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~ 80 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY 80 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCC-eEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence 689999999999999999999999987 55554432 111 11 1234568999999999999999999999999999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCc------------cccCCCCCCCCCCCCc
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGK------------EIVNGNESLPYFPIDE 153 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~------------~~~~~~E~~p~~p~~~ 153 (478)
|+......+..++...+++|+.||.|++++|.+.+. ++|++||.++| |.. .....+|+.+..|.
T Consensus 81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vy-g~~~~~~~~~~~~~~~~~~~~e~~~~~p~-- 156 (346)
T d1oc2a_ 81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVY-GDLPLREDLPGHGEGPGEKFTAETNYNPS-- 156 (346)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGG-CCBCCGGGSTTTTCSTTSSBCTTSCCCCC--
T ss_pred hhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEe-cccCccccccccccCcccccccCCCCCCC--
Confidence 998766666678889999999999999999999995 89999999985 421 12234455555554
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC--CcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--RHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
++||.||.++|++++.+.. ..+++++++||++||||++. ..+..++..+..|..+.++|+|++.++|+|
T Consensus 157 --s~Y~~sK~~~E~~~~~~~~-------~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~ 227 (346)
T d1oc2a_ 157 --SPYSSTKAASDLIVKAWVR-------SFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIH 227 (346)
T ss_dssp --SHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEE
T ss_pred --CHHHHHHHHHHHHHHHHHH-------HcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEeCCCCccccccc
Confidence 8899999999999988864 57999999999999999764 467777777888888889999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHH
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYS 311 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~ 311 (478)
++|+|++++.+++. ...++.||++++++.++.|+++.+.+.++.+...+...
T Consensus 228 v~D~a~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------------- 279 (346)
T d1oc2a_ 228 TNDHSTGVWAILTK------------GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV---------------- 279 (346)
T ss_dssp HHHHHHHHHHHHHH------------CCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEE----------------
T ss_pred hhhHHHHHHHHHhh------------cccCccccccccccccchHHHHHHHHHhCCCCcceEEC----------------
Confidence 99999999988874 35577999999999999999999999999764432210
Q ss_pred hhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCC-ChHHHHHHHHHHHHHcc
Q 011770 312 VLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIV-SPREGMAATISYWQDRK 373 (478)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~~~e~l~~~i~~~~~~~ 373 (478)
. ..|.. ......|++|++++|||+|++ ++++||+++++||+++.
T Consensus 280 ------~----~~~~~--------~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~ti~w~~~n~ 324 (346)
T d1oc2a_ 280 ------T----DRAGH--------DLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQ 324 (346)
T ss_dssp ------C----CCTTC--------CCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTH
T ss_pred ------C----CCCCC--------CceeeeCHHHHHHHHCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 0 11110 012346999999999999997 69999999999999865
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6e-46 Score=365.86 Aligned_cols=303 Identities=22% Similarity=0.251 Sum_probs=241.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHV 85 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHl 85 (478)
|+|||||||||||++|+++|+++||+ |++++|..+.... .....++++++++|++|.+.+.+.+. ..++++|+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~-V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~ 79 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYR-VHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL 79 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence 68999999999999999999999999 9999987654221 12234679999999999999998886 46799999
Q ss_pred ccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHH
Q 011770 86 ASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 164 (478)
Q Consensus 86 Aa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~ 164 (478)
|+.........++...++.|+.||.|++++|++.+++ +++++||..+ |+.....+.+|++|..|. ++|+.+|.+
T Consensus 80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~-~~~~~~~~~~E~~~~~p~----~~Y~~sK~~ 154 (321)
T d1rpna_ 80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEM-FGLIQAERQDENTPFYPR----SPYGVAKLY 154 (321)
T ss_dssp CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGG-GCSCSSSSBCTTSCCCCC----SHHHHHHHH
T ss_pred cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhh-cCcccCCCCCCCCCcccc----ChhHHHHHH
Confidence 9876666666677888999999999999999999976 5666666554 777777788999988876 889999999
Q ss_pred HHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHHHHHcCC-CCeeeCCCCccccceeHHHHHHH
Q 011770 165 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVSLAKLGL-VPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 165 aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~~~~~g~-~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
+|+++..+.. ..+++++++||+++|||.... .+..++..+..|. ....+|+|++.++|+||+|+|++
T Consensus 155 ~E~~~~~~~~-------~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~ 227 (321)
T d1rpna_ 155 GHWITVNYRE-------SFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEA 227 (321)
T ss_dssp HHHHHHHHHH-------HHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHH
T ss_pred HHHHHHHHHh-------hcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHH
Confidence 9999998864 578999999999999996432 2333444445444 45568999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcc-cCChHHHHHHHHHHHHHHHhhhhcc
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKS-WLAVPHALFLGKVFSFFYSVLYPWL 317 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~-~lp~~~~~~~a~~~~~~~~~~~~~~ 317 (478)
+..+++. ..++.||++++++.++.++++.+.+.+|.+.+.. ..+...
T Consensus 228 ~~~~~~~-------------~~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 275 (321)
T d1rpna_ 228 MWLMLQQ-------------DKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAF------------------- 275 (321)
T ss_dssp HHHHHHS-------------SSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGG-------------------
T ss_pred HHHHHhc-------------CCcCCceecccccceehhhhHHHHHHhCCCccceeecCCCC-------------------
Confidence 9999973 2356899999999999999999999999764322 111000
Q ss_pred ccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 318 NRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
..| .+. .....|++|++++|||+|+++++|+|++|++|+.++
T Consensus 276 -----~rp----~~~----~~~~~d~~k~~k~lG~~P~~~l~e~i~~tv~~~l~~ 317 (321)
T d1rpna_ 276 -----FRP----AEV----DVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRR 317 (321)
T ss_dssp -----CCS----SCC----CBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred -----CCC----Ccc----CCccCCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 111 111 123469999999999999999999999999998764
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-45 Score=367.47 Aligned_cols=314 Identities=21% Similarity=0.242 Sum_probs=241.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----ccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----HLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFH 84 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViH 84 (478)
|.|||||||||||++|+++|+++|++ |+++|+...+... ......+++++++|++|.++++++++ ++|+|||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih 80 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYD-CVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH 80 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCe-EEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 56999999999999999999999998 9999875443211 12235679999999999999999887 7999999
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCc---cccCCCCCCCCCCCCccCCchHhh
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGK---EIVNGNESLPYFPIDEHVDSYGRS 161 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~---~~~~~~E~~p~~p~~~~~~~Y~~s 161 (478)
+||.........++..+..+|+.||.+++++|++.+++|+||+||.+||+... ...+.+|+.+..|. ++|+.|
T Consensus 81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~----~~Y~~s 156 (347)
T d1z45a2 81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPT----NPYGHT 156 (347)
T ss_dssp CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCC----SHHHHH
T ss_pred ccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCC----ChhHhH
Confidence 99987666666778889999999999999999999999999999999954332 23456777777775 889999
Q ss_pred HHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------------CcHHHHHHHHH-cCCCCeeeCCCC----
Q 011770 162 KSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------------RHLPRIVSLAK-LGLVPFKIGEPS---- 224 (478)
Q Consensus 162 K~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------------~~~~~~i~~~~-~g~~~~~~g~g~---- 224 (478)
|.++|++++.+... ...+++++++||+++||+... ..++.++..+. .+.++.++|++.
T Consensus 157 K~~~E~~~~~~~~~-----~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~ 231 (347)
T d1z45a2 157 KYAIENILNDLYNS-----DKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD 231 (347)
T ss_dssp HHHHHHHHHHHHHH-----STTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CC
T ss_pred HHHHHHHHHHHHHh-----hccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccC
Confidence 99999999887531 157899999999999997542 13444444443 345555666654
Q ss_pred --ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHH
Q 011770 225 --VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFL 302 (478)
Q Consensus 225 --~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~ 302 (478)
..+|++++.|.+.+++.+++..... ..+...+++||+++++++++.|+++.+.+.+|.+.+....|.
T Consensus 232 ~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~------ 300 (347)
T d1z45a2 232 GTPIRDYIHVVDLAKGHIAALQYLEAY-----NENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR------ 300 (347)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHHHS-----CTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC-----------
T ss_pred Cceeeeeeeeecccccccccccccccc-----cccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCC------
Confidence 5667888888999998888754433 233456789999999999999999999999998765432211
Q ss_pred HHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 303 GKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
. +.+. .....|++|++++|||+|+++++|+|+++++|++++..+
T Consensus 301 ---------------------~----~~~~----~~~~~d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np~~ 344 (347)
T d1z45a2 301 ---------------------R----AGDV----LNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFG 344 (347)
T ss_dssp -----------------------------C----CCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ---------------------C----CCCC----CEeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHhChhc
Confidence 0 0111 122469999999999999999999999999999998543
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-45 Score=364.99 Aligned_cols=319 Identities=17% Similarity=0.130 Sum_probs=241.0
Q ss_pred CeE-EEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc----------cccccCCCeEEEEecCCCHHHHHHHhc--C
Q 011770 12 KTF-LVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW----------SHLLINHGVHCIQGDVVSKIDVEKAAR--G 78 (478)
Q Consensus 12 ~~I-LVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~----------~~~~~~~~v~~v~gDl~d~~~l~~~l~--~ 78 (478)
||| ||||||||||+||+++|+++||+ |+++||.++... .......+++++++|++|.+.+.++++ +
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~-V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 79 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYE-VHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 79 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCE-EEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence 567 99999999999999999999999 999999764211 011223568999999999999999986 5
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC---CeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI---QRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v---~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
+++|+|+|+.........++....++|+.||.|++++|+++++ +++||+||.+| ||.....+.+|++|+.|.
T Consensus 80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~v-yg~~~~~~~~E~~~~~P~---- 154 (347)
T d1t2aa_ 80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSEL-YGKVQEIPQKETTPFYPR---- 154 (347)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGG-TCSCSSSSBCTTSCCCCC----
T ss_pred cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchhe-ecCCCCCCCCCCCCCCCC----
Confidence 7899999997766666667778889999999999999999875 38999999998 666666788999998885
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
++||.||.++|++++.+.. .++++++++||+++|||+... ....+......+.....+|++++.++|
T Consensus 155 ~~Yg~sK~~aE~~~~~~~~-------~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~ 227 (347)
T d1t2aa_ 155 SPYGAAKLYAYWIVVNFRE-------AYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDW 227 (347)
T ss_dssp SHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECC
T ss_pred CHHHHHHHHHHHHHHHHHH-------HhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeee
Confidence 8999999999999998764 578999999999999997542 122344555566677788999999999
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHH
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFF 309 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~ 309 (478)
+||+|+++++..+++. ...+.|+++.+...+..+..+.+...++........+....
T Consensus 228 i~v~D~~~a~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 284 (347)
T d1t2aa_ 228 GHAKDYVEAMWLMLQN-------------DEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEV---------- 284 (347)
T ss_dssp EEHHHHHHHHHHHHHS-------------SSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCE----------
T ss_pred eEecHHHHHHHHHhhc-------------CCCccceeccccccccchhhhhhhhhhcceeeecccchhhh----------
Confidence 9999999999999984 12357999999999999999999999987643322211000
Q ss_pred HHhhhhccccccCCCCCCcHHHhhhh-cceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHH
Q 011770 310 YSVLYPWLNRWWLPQPLILPAEVYKV-GVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQD 371 (478)
Q Consensus 310 ~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~ 371 (478)
.. ...........+....+.. .....+|++|++++|||+|+++++|+|+++++|..+
T Consensus 285 ----~~-~~~~~~~~~~~~~~~~rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~ 342 (347)
T d1t2aa_ 285 ----GR-CKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVE 342 (347)
T ss_dssp ----EE-ETTTCCEEEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred ----hh-hhhcCCceeeecccCCCCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHH
Confidence 00 0000000000000000000 112346999999999999999999999999876543
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-44 Score=360.15 Aligned_cols=310 Identities=19% Similarity=0.198 Sum_probs=240.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----------ccccCCCeEEEEecCCCHHHHHHHhcC-
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----------HLLINHGVHCIQGDVVSKIDVEKAARG- 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----------~~~~~~~v~~v~gDl~d~~~l~~~l~~- 78 (478)
.|||||||||||||++|+++|+++|++ |+++|+....... ......+++++++|++|.+.+++++.+
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g~~-V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 80 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAGYL-PVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCC-EEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccc
Confidence 379999999999999999999999999 9999864332110 112346799999999999999998864
Q ss_pred -cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCc
Q 011770 79 -VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDS 157 (478)
Q Consensus 79 -~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~ 157 (478)
+|+|+|+||......+..++...+++|+.||.+++++|++.+++++||+||+.+|+.........+.....| .++
T Consensus 81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (346)
T d1ek6a_ 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGC----TNP 156 (346)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCC----SSH
T ss_pred ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeecccccccccccccccc----CCh
Confidence 568999999877666777888899999999999999999999999999999998644433333222222223 378
Q ss_pred hHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------------CcHHHHHHHHH-cCCCCeeeC---
Q 011770 158 YGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------------RHLPRIVSLAK-LGLVPFKIG--- 221 (478)
Q Consensus 158 Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------------~~~~~~i~~~~-~g~~~~~~g--- 221 (478)
|+.+|..+|+.+.++.. ...+++.+++||+++|||... ..++.++..+. ++..+.++|
T Consensus 157 Y~~~k~~~e~~~~~~~~------~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~ 230 (346)
T d1ek6a_ 157 YGKSKFFIEEMIRDLCQ------ADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDY 230 (346)
T ss_dssp HHHHHHHHHHHHHHHHH------HCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCS
T ss_pred HHHHHHHHHHHHHHHHH------hccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcc
Confidence 99999999999987653 146899999999999998643 13444444333 444444443
Q ss_pred ---CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHH
Q 011770 222 ---EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPH 298 (478)
Q Consensus 222 ---~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~ 298 (478)
++.+.|||+|++|+|.++..+++... ....+++|||++++++++.|+++.+.+.+|.+.+....|.
T Consensus 231 ~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~---------~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~-- 299 (346)
T d1ek6a_ 231 DTEDGTGVRDYIHVVDLAKGHIAALRKLK---------EQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR-- 299 (346)
T ss_dssp SSSSSSCEECEEEHHHHHHHHHHHHHHHT---------TTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC--
T ss_pred cCCCCCeeEeEEEEEeccchhhhhccccc---------cccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCC--
Confidence 57788999999999999988866422 2346789999999999999999999999998766543321
Q ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 299 ALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
.| .+. .....|++|++++|||+|+++++|+|+++++||++++.+
T Consensus 300 -------------------------~~----~e~----~~~~~d~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~~ 343 (346)
T d1ek6a_ 300 -------------------------RE----GDV----AACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSG 343 (346)
T ss_dssp -------------------------CT----TCC----SEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred -------------------------CC----CCC----CEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHhh
Confidence 11 111 123579999999999999999999999999999988764
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1e-43 Score=352.37 Aligned_cols=304 Identities=18% Similarity=0.164 Sum_probs=234.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc----------cccccCCCeEEEEecCCCHHHHHHHhc--C
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW----------SHLLINHGVHCIQGDVVSKIDVEKAAR--G 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~----------~~~~~~~~v~~v~gDl~d~~~l~~~l~--~ 78 (478)
+|++||||||||||+||+++|+++||+ |++++|..+... ........++++.+|+++.+.+.+.++ +
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~ 79 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYE-VHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK 79 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCE-EEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence 479999999999999999999999999 999998654210 011223558899999999999999886 6
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC-----CCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG-----IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~-----v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
+|+|||+||.........++....+.|+.|+.++++++++.+ ..++++.||..+ ++ ....+.+|+.|..|.
T Consensus 80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~-~~-~~~~~~~E~~~~~p~-- 155 (339)
T d1n7ha_ 80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEM-FG-STPPPQSETTPFHPR-- 155 (339)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGG-GT-TSCSSBCTTSCCCCC--
T ss_pred cchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeeccccee-cc-cCCCCCCCCCCCCCc--
Confidence 799999999866665667788899999999999999998653 346778887765 33 334567899988875
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cH----HHHH-HHHHcCCCCeeeCCCCccc
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HL----PRIV-SLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~----~~~i-~~~~~g~~~~~~g~g~~~~ 227 (478)
+.|+.+|..+|+++..+.. .++++++++||++||||+... .. ...+ .....+......|++.+.+
T Consensus 156 --~~Y~~sK~~~E~~~~~~~~-------~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r 226 (339)
T d1n7ha_ 156 --SPYAASKCAAHWYTVNYRE-------AYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASR 226 (339)
T ss_dssp --SHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEE
T ss_pred --chhhHHHHHHHHHHHHHHH-------HhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccc
Confidence 8999999999999988875 578999999999999997543 22 2222 2333445556779999999
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHH
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFS 307 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~ 307 (478)
||+|++|+|+++.++++. ..+..++++.+.+.+..|+++.+.+.+|...+.....
T Consensus 227 d~~~v~D~a~~~~~~~~~-------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~------------ 281 (339)
T d1n7ha_ 227 DWGFAGDYVEAMWLMLQQ-------------EKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEI------------ 281 (339)
T ss_dssp ECEEHHHHHHHHHHHHTS-------------SSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEE------------
T ss_pred cceeeehHHHHHHHHHhc-------------CCCCccccccccccccchhhhhhhhhhhcccCceeee------------
Confidence 999999999999999873 2345678888899999999999999999764321100
Q ss_pred HHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 308 FFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 308 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
......+.+. .....|++|++++|||+|+++++++|++|++||.+.
T Consensus 282 ---------------~~~~~r~~~~----~~~~~d~~Kak~~LGw~P~~~le~gi~~ti~~~~~~ 327 (339)
T d1n7ha_ 282 ---------------DQRYFRPAEV----DNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLEL 327 (339)
T ss_dssp ---------------CGGGSCSSCC----CBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred ---------------ccCCCCCCCC----CeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 0000011111 122469999999999999999999999999999765
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=2.9e-43 Score=355.63 Aligned_cols=314 Identities=17% Similarity=0.125 Sum_probs=238.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHH-cCCceEEEEecCCCCc---------------------ccccccCCCeEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVR-RGAYQVRAFDLRTNSP---------------------WSHLLINHGVHCIQGDVVS 68 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~~l~r~~~~~---------------------~~~~~~~~~v~~v~gDl~d 68 (478)
.|||||||||||||++|+++|++ .|++ |+++|+-.... .........+.++.+|++|
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~-V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHS-VVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCE-EEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCE-EEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 35899999999999999999986 5888 99998522110 0011123458899999999
Q ss_pred HHHHHHHhc---CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccc------
Q 011770 69 KIDVEKAAR---GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEI------ 139 (478)
Q Consensus 69 ~~~l~~~l~---~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~------ 139 (478)
.+.++++++ ++|+|||+|+.........++....++|+.+|.+++++|++.++++++++||..+|......
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence 999999885 67999999998776666667778889999999999999999999999999999986543322
Q ss_pred cCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----------cHHHHH
Q 011770 140 VNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----------HLPRIV 208 (478)
Q Consensus 140 ~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----------~~~~~i 208 (478)
.+..|+.+..|. ++|+.+|..+|++++.+.. .++++++++||+++|||++.. .++.++
T Consensus 161 ~~~~e~~~~~p~----~~Y~~sK~~~e~~~~~~~~-------~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii 229 (383)
T d1gy8a_ 161 EPIDINAKKSPE----SPYGESKLIAERMIRDCAE-------AYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIIL 229 (383)
T ss_dssp CCBCTTSCCBCS----SHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHH
T ss_pred cccccccCCCCC----CHHHhhHhHHHHHHHHHHH-------HhCCCEEEEecceeeccCccccccccccccchhHHHHH
Confidence 234455555554 8999999999999998864 579999999999999998752 234443
Q ss_pred HHHH----------------cCCCCeee------CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEe
Q 011770 209 SLAK----------------LGLVPFKI------GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFV 266 (478)
Q Consensus 209 ~~~~----------------~g~~~~~~------g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni 266 (478)
..+. .+..+.++ ++|++.|||+||+|+|+++..+++......+ ......+++|||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~---~~~~~~~~i~Ni 306 (383)
T d1gy8a_ 230 GRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGP---NDKSKYFSVFNL 306 (383)
T ss_dssp HHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCT---TTGGGSEEEEEE
T ss_pred HHHHhhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccc---cccccCccEEEe
Confidence 3322 23333344 3578899999999999999999875433200 012345689999
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhH
Q 011770 267 SDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKA 346 (478)
Q Consensus 267 ~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka 346 (478)
++++++++.|+++.+.+.+|.+.+....+ ..| .+. .....|++|+
T Consensus 307 ~s~~~~s~~el~~~i~~~~~~~~~~~~~~---------------------------~~~----~d~----~~~~~d~~k~ 351 (383)
T d1gy8a_ 307 GTSRGYSVREVIEVARKTTGHPIPVRECG---------------------------RRE----GDP----AYLVAASDKA 351 (383)
T ss_dssp SCSCCEEHHHHHHHHHHHHCCCCCEEEEC---------------------------CCT----TCC----SEECBCCHHH
T ss_pred CCCCceeHHHHHHHHHHHhCCCCceEECC---------------------------CCC----CCc----CEeeeCHHHH
Confidence 99999999999999999999876653322 111 011 1235699999
Q ss_pred HHhCCCCcCCChHHHHHHH-HHHHHHccC
Q 011770 347 KDELCYVPIVSPREGMAAT-ISYWQDRKR 374 (478)
Q Consensus 347 ~~~LG~~p~~~~~e~l~~~-i~~~~~~~~ 374 (478)
+++|||+|+++++|+|+++ +.|++.++.
T Consensus 352 ~k~LGw~P~~~l~e~i~~t~~~w~~~~~~ 380 (383)
T d1gy8a_ 352 REVLGWKPKYDTLEAIMETSWKFQRTHPN 380 (383)
T ss_dssp HHHTCCCCSCCSHHHHHHHHHHHHHTCTT
T ss_pred HHHHCCccCCCHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999887 588888754
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-43 Score=344.68 Aligned_cols=299 Identities=16% Similarity=0.153 Sum_probs=232.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~ 88 (478)
+|||||||||||||++|+++|+++|+. |++++++.. .|+.|.+.+.++++ ++|.|+|+|+.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~-vi~~~~~~~----------------~~~~~~~~~~~~~~~~~~d~v~~~a~~ 64 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDV-ELVLRTRDE----------------LNLLDSRAVHDFFASERIDQVYLAAAK 64 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTE-EEECCCTTT----------------CCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCE-EEEecCchh----------------ccccCHHHHHHHHhhcCCCEEEEcchh
Confidence 579999999999999999999999998 888765432 68999999998886 58999999986
Q ss_pred CCCc-hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCC-CccCCchHhhHHHHH
Q 011770 89 GMSG-KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI-DEHVDSYGRSKSVAE 166 (478)
Q Consensus 89 ~~~~-~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~-~~~~~~Y~~sK~~aE 166 (478)
.... ....++..++++|+.||.|++++|++.+++||||+||.+| ||+....+.+|+.+.... ..+.++|+.||.++|
T Consensus 65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~v-yg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 143 (315)
T d1e6ua_ 65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI-YPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGI 143 (315)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGG-SCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceE-cCCCCCCCccCCccccCCCCCCCCHHHHHHHHHH
Confidence 4332 2344566778999999999999999999999999999999 566656677887665422 223467999999999
Q ss_pred HHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----c-HH-----HHHHHHHcCCCCeeeCCCCccccceeHHHH
Q 011770 167 QLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----H-LP-----RIVSLAKLGLVPFKIGEPSVKTDWIYVDNL 235 (478)
Q Consensus 167 ~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~-~~-----~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dv 235 (478)
++++.+.. ..|++++++||++||||++.. . .. ........+..+.+.|++.+.++|+|++|+
T Consensus 144 ~~~~~~~~-------~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~ 216 (315)
T d1e6ua_ 144 KLCESYNR-------QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDM 216 (315)
T ss_dssp HHHHHHHH-------HHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHH
T ss_pred HHHHHHHH-------HhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehh
Confidence 99998864 579999999999999998642 1 11 223445667777888999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhh
Q 011770 236 VLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYP 315 (478)
Q Consensus 236 a~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~ 315 (478)
++++..+++....... .........+|++.+.+.++.++++.+.+.+|.+......|
T Consensus 217 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~-------------------- 273 (315)
T d1e6ua_ 217 AAASIHVMELAHEVWL---ENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA-------------------- 273 (315)
T ss_dssp HHHHHHHHHSCHHHHH---HTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEET--------------------
T ss_pred HHHHHHhhhhcccccc---ccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECC--------------------
Confidence 9999998864221100 01133456899999999999999999999999875432211
Q ss_pred ccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHcc
Q 011770 316 WLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRK 373 (478)
Q Consensus 316 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~ 373 (478)
..|. . .....+|++|++ +|||+|+++++|+|+++++||++++
T Consensus 274 -------~~~~----~----~~~~~~d~sk~k-~Lg~~p~~~l~e~i~~ti~w~~~N~ 315 (315)
T d1e6ua_ 274 -------SKPD----G----TPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQ 315 (315)
T ss_dssp -------TSCC----C----CSBCCBCCHHHH-HTTCCCCCCHHHHHHHHHHHHHHTC
T ss_pred -------CCCC----C----CceeccCHHHHH-HcCCCCCCCHHHHHHHHHHHHHHcC
Confidence 1111 0 012246999997 5999999999999999999999764
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=9e-43 Score=344.53 Aligned_cols=302 Identities=20% Similarity=0.223 Sum_probs=237.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHhcC--cCEEEEcc
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAARG--VDCVFHVA 86 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l~~--~D~ViHlA 86 (478)
||||||||||||+||+++|+++|++ |+++|+-...... ......+++++++|++|.+++.+++++ +|+|||+|
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~-V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a 80 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGID-LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 80 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence 7999999999999999999999998 9999864332211 122356899999999999999999975 59999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccC----------------CCCCCCCCC
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVN----------------GNESLPYFP 150 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~----------------~~E~~p~~p 150 (478)
+.........++....++|+.||.|++++|.+.+++++|+.||.+++++.....+ .++..++.|
T Consensus 81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
T d1orra_ 81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDF 160 (338)
T ss_dssp CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCC
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcccc
Confidence 9876666667788999999999999999999999998888888877665432221 122333333
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHHHHH-----cCCCCeee
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVSLAK-----LGLVPFKI 220 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~~~~-----~g~~~~~~ 220 (478)
.+.|+.+|..+|.++..+.. .++...+++|++++||+.... .++.++..+. .++.+.++
T Consensus 161 ----~~~y~~~k~~~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
T d1orra_ 161 ----HSPYGCSKGAADQYMLDYAR-------IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS 229 (338)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ----ccccccccchhhhhhhhhhh-------ccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEe
Confidence 37899999999999887754 578899999999999876432 3455554443 36677889
Q ss_pred CCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecC--CCCCCHHHHHHHHHHhcCCCCCcccCChHH
Q 011770 221 GEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSD--GFPINTFEFIGPLLKTLDYDLPKSWLAVPH 298 (478)
Q Consensus 221 g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~--g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~ 298 (478)
|+|++.+||+||+|+|++++.+++. .....|++||+.. ++++++.|+++.+.+..|.+.+....|.
T Consensus 230 g~g~~~r~~~~v~D~~~~~~~~l~~----------~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-- 297 (338)
T d1orra_ 230 GNGKQVRDVLHAEDMISLYFTALAN----------VSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV-- 297 (338)
T ss_dssp SSSCCEEECEEHHHHHHHHHHHHHT----------HHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECC--
T ss_pred CCCceeEeeecccchhhHHHHHHhc----------cccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCC--
Confidence 9999999999999999999999873 2235688999954 5678999999999999998766543321
Q ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHH
Q 011770 299 ALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQD 371 (478)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~ 371 (478)
.|. + ......|++|++++|||+|+++++|+|+++++|+|.
T Consensus 298 -------------------------~~~----~----~~~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 298 -------------------------RES----D----QRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp -------------------------CSS----C----CSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred -------------------------CCC----C----cCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 110 0 012245999999999999999999999999999985
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1e-42 Score=352.72 Aligned_cols=307 Identities=18% Similarity=0.170 Sum_probs=226.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC--------------C-Cccc------ccccCCCeEEEEecCCCH
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT--------------N-SPWS------HLLINHGVHCIQGDVVSK 69 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~--------------~-~~~~------~~~~~~~v~~v~gDl~d~ 69 (478)
+|||||||||||||++|+++|+++||+ |+++|.-. + .... ......+++++++|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~-V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYE-VCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 589999999999999999999999999 99997310 0 0000 011246799999999999
Q ss_pred HHHHHHhc--CcCEEEEcccCCCCchhh---hchhhhhHhhhHHHHHHHHHHHHcCCCe-EEEEeccceeeCCccccC--
Q 011770 70 IDVEKAAR--GVDCVFHVASYGMSGKEM---LQFGRVDEVNINGTCHVIEACLEFGIQR-LVYVSTYNVVFGGKEIVN-- 141 (478)
Q Consensus 70 ~~l~~~l~--~~D~ViHlAa~~~~~~~~---~~~~~~~~vNv~gt~nll~aa~~~~v~r-~V~~SS~~v~~g~~~~~~-- 141 (478)
+.+.++++ ++|+|||+||......+. ..+..++++|+.||.|++++|++.++++ +++.||..+ |+......
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~-~~~~~~~~~~ 158 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGE-YGTPNIDIEE 158 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGG-GCCCSSCBCS
T ss_pred HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccc-cccccccccc
Confidence 99999998 469999999976544433 3345678999999999999999998775 555555544 54322110
Q ss_pred -----------CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC---------
Q 011770 142 -----------GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE--------- 201 (478)
Q Consensus 142 -----------~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~--------- 201 (478)
.+|..|..| .++|+.||..+|.++..+.. .++++++++||++||||++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~p----~~~Y~~sK~~aE~~~~~~~~-------~~~l~~~~lR~~~v~G~~~~~~~~~~~~~ 227 (393)
T d1i24a_ 159 GYITITHNGRTDTLPYPKQA----SSFYHLSKVHDSHNIAFTCK-------AWGIRATDLNQGVVYGVKTDETEMHEELR 227 (393)
T ss_dssp SEEEEEETTEEEEEECCCCC----CSHHHHHHHHHHHHHHHHHH-------HHCCEEEEEEECEEECSCCTTGGGSGGGC
T ss_pred cccccccccccccccccccc----ccHHHHHhhhhccccccccc-------ccceeeeecccccccCCCccccccccccc
Confidence 011233444 37899999999999988864 57999999999999999753
Q ss_pred ----------CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEe-cCCC
Q 011770 202 ----------RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFV-SDGF 270 (478)
Q Consensus 202 ----------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni-~~g~ 270 (478)
.+++.++..+..|.++.++|++.+.|||+||+|+|+|+..++++ +...|+.+++ ++++
T Consensus 228 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~-----------~~~~g~~~~~~~~~~ 296 (393)
T d1i24a_ 228 NRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIAN-----------PAKAGEFRVFNQFTE 296 (393)
T ss_dssp CCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHS-----------CCCTTCEEEEEECSE
T ss_pred cccccccccccchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHh-----------hcccceeeeecCCCC
Confidence 13677888888999999999999999999999999999999973 2344443333 4567
Q ss_pred CCCHHHHHHHHHHhc---CCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHH
Q 011770 271 PINTFEFIGPLLKTL---DYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAK 347 (478)
Q Consensus 271 ~~s~~e~~~~i~~~l---g~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~ 347 (478)
.+|+.|+++.+.+.. +.+.+.... ..|..... ......|++|++
T Consensus 297 ~~si~el~~~i~~~~~~~~~~~~~~~~----------------------------~~~~~~~~-----~~~~~~d~~k~~ 343 (393)
T d1i24a_ 297 QFSVNELASLVTKAGSKLGLDVKKMTV----------------------------PNPRVEAE-----EHYYNAKHTKLM 343 (393)
T ss_dssp EEEHHHHHHHHHHHHHTTTCCCCEEEE----------------------------CCSSCSCS-----SCCCCBCCCHHH
T ss_pred eeEHHHHHHHHHHHHHhhCCCcceeec----------------------------cCCCCCCC-----ccEecCCHHHHH
Confidence 889999988887764 333322211 11111100 011235889997
Q ss_pred HhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 348 DELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 348 ~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
+ |||+|+++++++++++++|+++.+..
T Consensus 344 ~-LGw~P~~~~~~~i~~~~~~~~~~k~~ 370 (393)
T d1i24a_ 344 E-LGLEPHYLSDSLLDSLLNFAVQFKDR 370 (393)
T ss_dssp H-TTCCCCCCCHHHHHHHHHHHHHTGGG
T ss_pred H-cCCccccCHHHHHHHHHHHHHHHHHh
Confidence 5 99999999999999999999887653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=6.6e-41 Score=334.22 Aligned_cols=322 Identities=20% Similarity=0.216 Sum_probs=240.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc--CcCEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVF 83 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~Vi 83 (478)
.++|||||||||||||++|+++|+++|++ |++++|+.+.... .....++++++++|++|++.+.++++ .+|+|+
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~-V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~ 84 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 84 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence 36799999999999999999999999999 9999997764321 11234679999999999999999887 579999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCe-EEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhH
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQR-LVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 162 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r-~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK 162 (478)
|+|+......+..++....++|+.||.|++++|++.+.++ +++.||..++++.....+.+|+.+..|. ++|+.+|
T Consensus 85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~----~~y~~~k 160 (356)
T d1rkxa_ 85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGY----DPYSNSK 160 (356)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCS----SHHHHHH
T ss_pred hhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCC----Ccccccc
Confidence 9999876666667788899999999999999999987555 5555555444444555666777777775 8999999
Q ss_pred HHHHHHHHHHcCCCCc--cCCCCcceEEEEeCCceeCCCCC---CcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHH
Q 011770 163 SVAEQLVLKSNGRPFK--KNNRKCLYTCAVRPAAIYGPGEE---RHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVL 237 (478)
Q Consensus 163 ~~aE~~v~~~~~~~~~--~~~~~gl~~~ilRp~~vyGp~~~---~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~ 237 (478)
..+|..+..+...... ....+++.++++||+++|||++. .+++.+++.+..+. +..++++++.++++||+|++.
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~D~~~ 239 (356)
T d1rkxa_ 161 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQ-PVIIRNPHAIRPWQHVLEPLS 239 (356)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTC-CEECSCTTCEECCEETHHHHH
T ss_pred ccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCC-ceEEeeccccccccccccccc
Confidence 9999888765321100 00135688999999999999874 35566777776555 457899999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhcc
Q 011770 238 ALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWL 317 (478)
Q Consensus 238 a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~ 317 (478)
|+..+++..... +.....+..++.+.++.++..++++.+.+.+|...+....+.
T Consensus 240 a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------- 293 (356)
T d1rkxa_ 240 GYLLLAQKLYTD-----GAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGN--------------------- 293 (356)
T ss_dssp HHHHHHHHHHHT-----CGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC------------------------
T ss_pred hhhhhhhhhccc-----ccccccccccccccccccccchhhhhhHHHhCCCccEEEcCC---------------------
Confidence 999888753322 011122233344456788999999999999997654321110
Q ss_pred ccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHccCC
Q 011770 318 NRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDRKRK 375 (478)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~~~~ 375 (478)
. .+.+. .....|++|++++|||+|+++++++|++|++||++....
T Consensus 294 -----~----~~~~~----~~~~~d~skak~~LGw~P~~~l~egi~~ti~wyk~~~~~ 338 (356)
T d1rkxa_ 294 -----A----HPHEA----HYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 338 (356)
T ss_dssp -------------CC----CCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred -----C----CCCCc----CeeeEcHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHcC
Confidence 0 01111 122469999999999999999999999999999986544
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=1.2e-37 Score=299.83 Aligned_cols=277 Identities=18% Similarity=0.163 Sum_probs=227.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~ 89 (478)
|||||||||||||++|+++|.++|++ |++++|+. +|++|.++++++++ ++|+|||+|+..
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~-Vi~~~r~~-----------------~D~~d~~~~~~~l~~~~~d~vih~a~~~ 63 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVE-VIPTDVQD-----------------LDITNVLAVNKFFNEKKPNVVINCAAHT 63 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEE-EEEECTTT-----------------CCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE-EEEeechh-----------------ccCCCHHHHHHHHHHcCCCEEEeecccc
Confidence 57999999999999999999999999 99998753 58999999999997 679999999987
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
....+...+......|+..+.++.+.+...+. .++++||..+ ++.....+.+|+++..|. +.|+.+|..+|+++
T Consensus 64 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v-~~~~~~~~~~e~~~~~~~----~~~~~~k~~~e~~~ 137 (281)
T d1vl0a_ 64 AVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYV-FDGEAKEPITEFDEVNPQ----SAYGKTKLEGENFV 137 (281)
T ss_dssp CHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGG-SCSCCSSCBCTTSCCCCC----SHHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccccccccccc-ccccccccee-eeccccccccccccccch----hhhhhhhhHHHHHH
Confidence 66666677788889999999999999988875 8888899888 566666677888877775 78999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
.++ +.+.+++||+++|||+.+ +...++..+..+....+.+ ++.++++|++|+++++..+++.
T Consensus 138 ~~~-----------~~~~~i~R~~~vyG~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~---- 199 (281)
T d1vl0a_ 138 KAL-----------NPKYYIVRTAWLYGDGNN-FVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE---- 199 (281)
T ss_dssp HHH-----------CSSEEEEEECSEESSSSC-HHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH----
T ss_pred HHh-----------CCCccccceeEEeCCCcc-cccchhhhhccCCceeecC--Cceeccchhhhhhhhhhhhhhh----
Confidence 765 457999999999999764 5667777887787666665 4889999999999999999984
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
...++||+++++++|+.|+++.+++.+|.+.+..++|..- + +.+...|
T Consensus 200 ---------~~~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~----------------------~-~~~a~rp 247 (281)
T d1vl0a_ 200 ---------KNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEE----------------------F-PRPAKRP 247 (281)
T ss_dssp ---------TCCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTT----------------------S-CCSSCCC
T ss_pred ---------cccCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHH----------------------c-CCcCCCc
Confidence 2235999999999999999999999999886654443210 0 1110000
Q ss_pred HHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHH
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQ 370 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~ 370 (478)
....+|++|++++|||+|+ +++++|+++++++|
T Consensus 248 -------~~~~ld~~k~~~~~g~~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 248 -------KYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp -------SBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred -------cccccCHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Confidence 1224799999999999998 79999999999986
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=1.7e-38 Score=315.62 Aligned_cols=304 Identities=17% Similarity=0.069 Sum_probs=217.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
++|+|||||||||||++|+++|+++|++ |+++.|+...... .........++.+|++|.+++.+++.++|+|+
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~-V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~ 88 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYK-VRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence 4689999999999999999999999999 9999886432110 01112234567899999999999999999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-CCCeEEEEeccceeeCCcccc---CCCCCC------------C
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-GIQRLVYVSTYNVVFGGKEIV---NGNESL------------P 147 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-~v~r~V~~SS~~v~~g~~~~~---~~~E~~------------p 147 (478)
|+|+..... .++...++.|+.||.|++++|.+. +++++||+||.+++++..+.. ..+|+. +
T Consensus 89 ~~a~~~~~~---~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 165 (342)
T d1y1pa1 89 HIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLP 165 (342)
T ss_dssp ECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSC
T ss_pred hhccccccc---ccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccccc
Confidence 999964432 245567889999999999999997 699999999987755433211 122221 1
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC-----CcHHHHHHHHHcCCCCeeeCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE-----RHLPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~-----~~~~~~i~~~~~g~~~~~~g~ 222 (478)
..+...+.++|+.||..+|++++.+.+. ...+++++++||+.+|||... .....++..+.+|...... .
T Consensus 166 e~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~-~ 239 (342)
T d1y1pa1 166 ESDPQKSLWVYAASKTEAELAAWKFMDE-----NKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL-A 239 (342)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHH-----HCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH-H
T ss_pred ccCCCCCcCcccchhHhHHHHHHHhhhh-----cccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc-C
Confidence 1112223478999999999999877542 135688999999999999632 2466777788888765433 3
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHH
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFL 302 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~ 302 (478)
+++.++|+||+|+|++++.+++. +.. ++.||+++++++++.|+++.+.+.++...-...+|.
T Consensus 240 ~~~~~~~v~v~Dva~~~i~~l~~-----------~~~-~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~------ 301 (342)
T d1y1pa1 240 LMPPQYYVSAVDIGLLHLGCLVL-----------PQI-ERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD------ 301 (342)
T ss_dssp TCCSEEEEEHHHHHHHHHHHHHC-----------TTC-CSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC------
T ss_pred CccceeeeeHHHHHHHHHHhhcC-----------ccc-cceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCc------
Confidence 46678999999999999999873 233 445778888999999999999998743211111110
Q ss_pred HHHHHHHHHhhhhccccccCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHH
Q 011770 303 GKVFSFFYSVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYW 369 (478)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~ 369 (478)
..+.... . + .-...+..+.|||.|.+++|++|+++++.+
T Consensus 302 --------------------~~~~~~~-----~--~-~~~s~~~~k~lg~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 302 --------------------QGQDLSK-----F--D-TAPSLEILKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp --------------------CCCCCCE-----E--C-CHHHHHHHHHTTCCSCCCHHHHHHHHHCCS
T ss_pred --------------------cCccccc-----c--c-chHHHHHHHHcCCCCCcCHHHHHHHHHHhC
Confidence 1110000 0 0 112344556799999999999999998754
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.7e-37 Score=297.53 Aligned_cols=292 Identities=17% Similarity=0.177 Sum_probs=196.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHH-HH-----hcCcCEEEEccc
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE-KA-----ARGVDCVFHVAS 87 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~-~~-----l~~~D~ViHlAa 87 (478)
|||||||||||++|+++|+++|+++|+++|+-............ ...|..+.+.+. .. +..+++|+|+|+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa 77 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL----NIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA 77 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTS----CCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhccccc----chhhhccchHHHHHHhhhhcccchhhhhhhcc
Confidence 89999999999999999999996439999854442211111111 112223323222 22 246799999998
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~ 167 (478)
..... ........+.|+.++.+++++++..++ ++|+.||..++++. .....+|+.+..|. +.|+.+|..+|.
T Consensus 78 ~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~i-~~v~~ss~~~~~~~-~~~~~~~~~~~~~~----~~Y~~~K~~~e~ 149 (307)
T d1eq2a_ 78 CSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGR-TSDFIESREYEKPL----NVYGYSKFLFDE 149 (307)
T ss_dssp CCCTT--CCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTC-CSCBCSSGGGCCCS----SHHHHHHHHHHH
T ss_pred ccccc--ccccccccccccccccccccccccccc-cccccccccccccc-cccccccccccccc----cccccccchhhh
Confidence 64433 234566788999999999999999998 57777777775543 33344444444443 789999999999
Q ss_pred HHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCee-eCCCCccccceeHHHHHHHHH
Q 011770 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFK-IGEPSVKTDWIYVDNLVLALI 240 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~-~g~g~~~~~~v~V~Dva~a~~ 240 (478)
++..+.. ..+++++++||+++|||++. .....+.+.+..|+.+.+ .|++...++|+|++|+++++.
T Consensus 150 ~~~~~~~-------~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~ 222 (307)
T d1eq2a_ 150 YVRQILP-------EANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNL 222 (307)
T ss_dssp HHHHHGG-------GCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHH
T ss_pred hcccccc-------ccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHH
Confidence 9999875 67999999999999999764 245667777887775544 588889999999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccc
Q 011770 241 LASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRW 320 (478)
Q Consensus 241 ~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (478)
.+++. ...+.||+++|++.++.|+++.+.+..+... ...+|..
T Consensus 223 ~~~~~-------------~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~-i~~~~~~----------------------- 265 (307)
T d1eq2a_ 223 WFLEN-------------GVSGIFNLGTGRAESFQAVADATLAYHKKGQ-IEYIPFP----------------------- 265 (307)
T ss_dssp HHHHH-------------CCCEEEEESCSCCBCHHHHHHHC---------------------------------------
T ss_pred HHhhh-------------ccccccccccccchhHHHHHHHHHHhcCCCC-eeEeeCC-----------------------
Confidence 88873 2356899999999999999999887655321 1111110
Q ss_pred cCCCCCCcHHHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHH
Q 011770 321 WLPQPLILPAEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYW 369 (478)
Q Consensus 321 ~~~~p~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~ 369 (478)
...+. ........|++|+++.+||+|+++++|||+++++|+
T Consensus 266 -----~~~~~---~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 266 -----DKLKG---RYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp --------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHT
T ss_pred -----ccCCC---CCceeeecCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 00000 001112358999999999999999999999999996
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-35 Score=286.12 Aligned_cols=294 Identities=16% Similarity=0.098 Sum_probs=216.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa~~ 89 (478)
|||||||||||||++|+++|.++|+ +++++++... +.+|++|.+.++++++ ++|+||||||..
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~--~v~~~~~~~~-------------~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~ 65 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN--LIALDVHSKE-------------FCGDFSNPKGVAETVRKLRPDVIVNAAAHT 65 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE--EEEECTTCSS-------------SCCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEECCCcc-------------ccCcCCCHHHHHHHHHHcCCCEEEEecccc
Confidence 5799999999999999999999885 5566665431 2489999999999997 569999999987
Q ss_pred CCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHH
Q 011770 90 MSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLV 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v 169 (478)
....+..++...+++|+.++.+++++|++.++ ++++.||..+| +.....+.+|+.+..|. +.|+.+|..+|+.+
T Consensus 66 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~-~~~~~~~~~E~~~~~p~----~~y~~~k~~~e~~~ 139 (298)
T d1n2sa_ 66 AVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVF-PGTGDIPWQETDATSPL----NVYGKTKLAGEKAL 139 (298)
T ss_dssp CHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGS-CCCTTCCBCTTSCCCCS----SHHHHHHHHHHHHH
T ss_pred cccccccCccccccccccccccchhhhhcccc-ccccccccccc-cCCCCCCCccccccCCC----chHhhhhhhhhhhH
Confidence 66667778888999999999999999999986 79999998885 45555678898888776 88999999999999
Q ss_pred HHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCC
Q 011770 170 LKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDD 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~ 249 (478)
+.+.. ..+++|++..|+.........+.+.+..+..+... +.+.++++|++|+++++..+++.....
T Consensus 140 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~i~~~~~~ 206 (298)
T d1n2sa_ 140 QDNCP-----------KHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVI--NDQYGAPTGAELLADCTAHAIRVALNK 206 (298)
T ss_dssp HHHCS-----------SEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEE--CSCEECCEEHHHHHHHHHHHHHHHHHC
T ss_pred Hhhhc-----------ccccccccceeeccCCccchhhhhhhcccceeecc--cceeecccccchHHHHHHHHHhhhhcc
Confidence 87643 23456666655544444455566666666655444 357889999999999998887643222
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHHhhhhccccccCCCCCCcH
Q 011770 250 IPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVPHALFLGKVFSFFYSVLYPWLNRWWLPQPLILP 329 (478)
Q Consensus 250 ~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~ 329 (478)
...+++||+++++.++..|+++.+.+..+.......++.. .+.....+ ..+.-
T Consensus 207 --------~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------~~i~~~~~-~~~a~-- 259 (298)
T d1n2sa_ 207 --------PEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTEL----------------NAVPTSAY-PTPAS-- 259 (298)
T ss_dssp --------GGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEE----------------EEECSTTS-CCSSC--
T ss_pred --------ccccccccccCCCceecHHHHHHHHhhhhccCccccccce----------------eeeehhhc-CccCC--
Confidence 3457899999999999999999887765432211111100 00000000 00000
Q ss_pred HHhhhhcceeEechHhHHHhCCCCcCCChHHHHHHHHHHHHHc
Q 011770 330 AEVYKVGVTHYFSLLKAKDELCYVPIVSPREGMAATISYWQDR 372 (478)
Q Consensus 330 ~~~~~~~~~~~~d~~ka~~~LG~~p~~~~~e~l~~~i~~~~~~ 372 (478)
...+..+|++|+++.|||+|+ +++++|+++++++...
T Consensus 260 -----RP~~~~ld~~K~~~~~~~~~~-~~~~gl~~~i~~~~~~ 296 (298)
T d1n2sa_ 260 -----RPGNSRLNTEKFQRNFDLILP-QWELGVKRMLTEMFTT 296 (298)
T ss_dssp -----CCSBCCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHSC
T ss_pred -----CccccccCHHHHHHHHCCCCC-cHHHHHHHHHHHHHhh
Confidence 011235799999999999998 7999999999988754
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.9e-29 Score=231.61 Aligned_cols=199 Identities=16% Similarity=0.070 Sum_probs=155.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.|++|+|||||||||||++|+++|+++|. ++|++++|++... .......++...+|+.+.+++.++++++|+|||+|
T Consensus 11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~--~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~ 88 (232)
T d2bkaa1 11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF--DEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCL 88 (232)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC--CSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhh--cccccceeeeeeecccccccccccccccccccccc
Confidence 46778999999999999999999999985 2499999987643 22344678888999999999999999999999999
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHH
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAE 166 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE 166 (478)
+... ...+...+.++|+.++.+++++|.+.++++|||+||..++ +. +.+.|+.+|..+|
T Consensus 89 ~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~-~~-----------------~~~~Y~~~K~~~E 147 (232)
T d2bkaa1 89 GTTR---GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGAD-KS-----------------SNFLYLQVKGEVE 147 (232)
T ss_dssp CCCH---HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCC-TT-----------------CSSHHHHHHHHHH
T ss_pred cccc---cccchhhhhhhcccccceeeecccccCccccccCCccccc-cC-----------------ccchhHHHHHHhh
Confidence 8532 2334567789999999999999999999999999998762 11 1267999999999
Q ss_pred HHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 167 QLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 167 ~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
+.+.+.. .-+++|+||+.+||+++.... ..+........ ..+......||++|+|++++.++.
T Consensus 148 ~~l~~~~----------~~~~~IlRP~~i~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~I~~~dvA~a~i~~~~ 211 (232)
T d2bkaa1 148 AKVEELK----------FDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSL-----PDSWASGHSVPVVTVVRAMLNNVV 211 (232)
T ss_dssp HHHHTTC----------CSEEEEEECCEEECTTGGGSHHHHHHHHHHCSC-----CTTGGGGTEEEHHHHHHHHHHHHT
T ss_pred hcccccc----------ccceEEecCceeecCCCcCcHHHHHHHHHhhcc-----CCcccCCCeEEHHHHHHHHHHHHh
Confidence 9987642 125899999999999876433 33333333322 223344567999999999998876
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5e-28 Score=222.10 Aligned_cols=203 Identities=16% Similarity=0.163 Sum_probs=160.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
|.||||+||||||+||++++++|+++|++ |++++|+++.. ......+++++.+|++|.+++.++++++|+|||+++.
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~-V~~~~R~~~~~--~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYE-VTVLVRDSSRL--PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCGGGS--CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEEcChhhc--ccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 45789999999999999999999999998 99999876532 2334577999999999999999999999999999985
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHH
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~ 168 (478)
... ....+++..++.|+++++++++++|+|++||..+++.... . | .....|...|..+|++
T Consensus 78 ~~~-------~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~-------~---~--~~~~~~~~~~~~~e~~ 138 (205)
T d1hdoa_ 78 RND-------LSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK-------V---P--PRLQAVTDDHIRMHKV 138 (205)
T ss_dssp TTC-------CSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC-------S---C--GGGHHHHHHHHHHHHH
T ss_pred CCc-------hhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc-------c---c--ccccccchHHHHHHHH
Confidence 321 1233578899999999999999999999999887432111 1 1 1124688999999998
Q ss_pred HHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccC
Q 011770 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLD 248 (478)
Q Consensus 169 v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~ 248 (478)
+++ .+++++++||+.+++.... +. .....++.....+|+++|+|++++.+++
T Consensus 139 l~~-----------~~~~~tiirp~~~~~~~~~------------~~-~~~~~~~~~~~~~i~~~DvA~~~~~~l~---- 190 (205)
T d1hdoa_ 139 LRE-----------SGLKYVAVMPPHIGDQPLT------------GA-YTVTLDGRGPSRVISKHDLGHFMLRCLT---- 190 (205)
T ss_dssp HHH-----------TCSEEEEECCSEEECCCCC------------SC-CEEESSSCSSCSEEEHHHHHHHHHHTTS----
T ss_pred HHh-----------cCCceEEEecceecCCCCc------------cc-EEEeeCCCCCCCcCCHHHHHHHHHHHhC----
Confidence 864 5789999999999875332 22 2345567788899999999999998886
Q ss_pred CCCCCCCCCCCCCceEEecC
Q 011770 249 DIPGQKGRPIASGQPYFVSD 268 (478)
Q Consensus 249 ~~~~~~~~~~~~g~~yni~~ 268 (478)
.+...|+.+.++.
T Consensus 191 -------~~~~~g~~~~~s~ 203 (205)
T d1hdoa_ 191 -------TDEYDGHSTYPSH 203 (205)
T ss_dssp -------CSTTTTCEEEEEC
T ss_pred -------CCCCCCEEEecCC
Confidence 3445688887764
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.96 E-value=1.8e-29 Score=245.22 Aligned_cols=243 Identities=14% Similarity=0.074 Sum_probs=186.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+++||||||||||||++|+++|+++|++ |++++|++..... ......+++++++|++|.+.+.++++++++++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~ 80 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVI 80 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhh
Confidence 3578999999999999999999999999 9999987653211 11235679999999999999999999999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHH
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKS 163 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~ 163 (478)
|+++... ...|..++.+++++|.+.+..++++.||.++. . ..+..+..| ...|..+|.
T Consensus 81 ~~~~~~~-----------~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~-~------~~~~~~~~~----~~~~~~~~~ 138 (312)
T d1qyda_ 81 SALAGGV-----------LSHHILEQLKLVEAIKEAGNIKRFLPSEFGMD-P------DIMEHALQP----GSITFIDKR 138 (312)
T ss_dssp ECCCCSS-----------SSTTTTTHHHHHHHHHHSCCCSEEECSCCSSC-T------TSCCCCCSS----TTHHHHHHH
T ss_pred hhhhhcc-----------cccchhhhhHHHHHHHHhcCCcEEEEeecccc-C------CCcccccch----hhhhhHHHH
Confidence 9997432 23567788899999999998899999986652 1 122222223 256788888
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS 243 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~ 243 (478)
.+|..... .+++++++||+.+||+...............+....++|+|++.++|+|++|+|++++.++
T Consensus 139 ~~~~~~~~-----------~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l 207 (312)
T d1qyda_ 139 KVRRAIEA-----------ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSI 207 (312)
T ss_dssp HHHHHHHH-----------TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHT
T ss_pred HHHHhhcc-----------cccceEEeccceeecCCccchhhHHHHhhhcccccccccccccccceeeHHHHHHHHHHHh
Confidence 88876643 5778999999999998654432222222334455567899999999999999999999998
Q ss_pred hcccCCCCCCCCCCCCCCce-EEecCCCCCCHHHHHHHHHHhcCCCCCcccCChH
Q 011770 244 MGLLDDIPGQKGRPIASGQP-YFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVP 297 (478)
Q Consensus 244 ~~l~~~~~~~~~~~~~~g~~-yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~ 297 (478)
+ .+...|+. |++++++.+|++|+++.+.+.+|.+.+...+|..
T Consensus 208 ~-----------~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~~~ 251 (312)
T d1qyda_ 208 D-----------DPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQ 251 (312)
T ss_dssp T-----------CGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSH
T ss_pred c-----------CccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECCHH
Confidence 7 33445555 5677778899999999999999999887777764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.95 E-value=3.8e-28 Score=234.33 Aligned_cols=236 Identities=14% Similarity=0.141 Sum_probs=181.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-------cccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-------LLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-------~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+|||||||||||||++|+++|+++|++ |++++|++...... .....+++++.+|+.+.+.+.+.++++|.|+
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~-V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi 81 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHP-TFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeee
Confidence 678999999999999999999999999 99999876643211 1234678999999999999999999999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHH
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKS 163 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~ 163 (478)
|+++. .++.++.++++++...+++++++.||.... .++..+..+ ...|...+.
T Consensus 82 ~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~s~~~~~--------~~~~~~~~~----~~~~~~~~~ 134 (307)
T d1qyca_ 82 STVGS---------------LQIESQVNIIKAIKEVGTVKRFFPSEFGND--------VDNVHAVEP----AKSVFEVKA 134 (307)
T ss_dssp ECCCG---------------GGSGGGHHHHHHHHHHCCCSEEECSCCSSC--------TTSCCCCTT----HHHHHHHHH
T ss_pred ecccc---------------cccchhhHHHHHHHHhccccceeeeccccc--------ccccccccc----ccccccccc
Confidence 99863 244566788999999999999999886431 122222111 245677777
Q ss_pred HHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHH
Q 011770 164 VAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILAS 243 (478)
Q Consensus 164 ~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~ 243 (478)
..|..+.+ .+++++++||+.+||++...+ ..+.....++....+++++++.++|+|++|+|++++.++
T Consensus 135 ~~~~~~~~-----------~~~~~~i~r~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l 202 (307)
T d1qyca_ 135 KVRRAIEA-----------EGIPYTYVSSNCFAGYFLRSL-AQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAV 202 (307)
T ss_dssp HHHHHHHH-----------HTCCBEEEECCEEHHHHTTTT-TCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTS
T ss_pred cccchhhc-----------cCCCceecccceecCCCccch-hhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHh
Confidence 77777654 467899999999999875532 222223344555667899999999999999999999887
Q ss_pred hcccCCCCCCCCCCCCCCc-eEEecCCCCCCHHHHHHHHHHhcCCCCCcccCChH
Q 011770 244 MGLLDDIPGQKGRPIASGQ-PYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAVP 297 (478)
Q Consensus 244 ~~l~~~~~~~~~~~~~~g~-~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~~ 297 (478)
+ .+...++ .||+++++.+|+.|+++.+.+.+|.+.+...+|..
T Consensus 203 ~-----------~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~~~ 246 (307)
T d1qyca_ 203 D-----------DPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEE 246 (307)
T ss_dssp S-----------CGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHH
T ss_pred c-----------ChhhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECCHH
Confidence 6 2334454 46677889999999999999999998877777764
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=3.6e-26 Score=213.16 Aligned_cols=231 Identities=16% Similarity=0.081 Sum_probs=163.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
.|+||||||||||||++++++|+++|++ .|+++.|+++. ......+++++.+|++|.+++.++++++|+|||+|+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~ 78 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG---KEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA 78 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHH---HHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHH---HHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence 4689999999999999999999999986 24445554331 2234567899999999999999999999999999986
Q ss_pred CCCch-------------hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 89 GMSGK-------------EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 89 ~~~~~-------------~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
..... ..........+|+.|+.++++.+...+.++..+.|+..++.. ..+. .....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~---------~~~~--~~~~~ 147 (252)
T d2q46a1 79 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP---------DHPL--NKLGN 147 (252)
T ss_dssp CCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT---------TCGG--GGGGG
T ss_pred ccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCC---------Cccc--ccccc
Confidence 43221 112345667899999999999999999999999998765211 0110 11122
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNL 235 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dv 235 (478)
..|...+...+.+.. ..+++++++||+.+|||.+...- ...+..... .....+++|++|+
T Consensus 148 ~~~~~~~~~~~~~~~-----------~~~~~~~ilRp~~v~g~~~~~~~------~~~~~~~~~---~~~~~~~i~~~Dv 207 (252)
T d2q46a1 148 GNILVWKRKAEQYLA-----------DSGTPYTIIRAGGLLDKEGGVRE------LLVGKDDEL---LQTDTKTVPRADV 207 (252)
T ss_dssp CCHHHHHHHHHHHHH-----------HSSSCEEEEEECEEECSCTTSSC------EEEESTTGG---GGSSCCEEEHHHH
T ss_pred cchhhhhhhhhhhhh-----------cccccceeecceEEECCCcchhh------hhhccCccc---ccCCCCeEEHHHH
Confidence 456777776666543 36789999999999999754210 001111111 1344679999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC---CCCHHHHHHHHHHhc
Q 011770 236 VLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF---PINTFEFIGPLLKTL 285 (478)
Q Consensus 236 a~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~---~~s~~e~~~~i~~~l 285 (478)
|++++.+++ .+...|++|||+++. ..+..|+.+.+.+..
T Consensus 208 a~a~~~~l~-----------~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 208 AEVCIQALL-----------FEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp HHHHHHHTT-----------CGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred HHHHHHHhC-----------CccccCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 999999987 445778999998643 456777776665543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=2.2e-25 Score=205.22 Aligned_cols=188 Identities=21% Similarity=0.188 Sum_probs=135.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-CcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-GVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-~~D~ViHlAa~ 88 (478)
.|||||||||||||++|+++|+++|+. +|+++.|++.. ..+.+ ..+..|..++.+.+. ++|+||||+|.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~------~~~~~---~~~~~d~~~~~~~~~~~~d~vi~~~g~ 72 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EHPRL---DNPVGPLAELLPQLDGSIDTAFCCLGT 72 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CCTTE---ECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh------hcccc---cccccchhhhhhccccchheeeeeeee
Confidence 489999999999999999999999983 27777665432 12223 445556555555444 58999999985
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHH
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQL 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~ 168 (478)
.. ........+.++|+.++.+++++|++.+++++||+||..++ +. ..+.|+.+|..+|+.
T Consensus 73 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~-~~-----------------~~~~y~~~K~~~E~~ 132 (212)
T d2a35a1 73 TI--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGAD-AK-----------------SSIFYNRVKGELEQA 132 (212)
T ss_dssp CH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCC-TT-----------------CSSHHHHHHHHHHHH
T ss_pred ec--cccccccccccchhhhhhhcccccccccccccccccccccc-cc-----------------cccchhHHHHHHhhh
Confidence 42 22234467889999999999999999999999999998773 11 126799999999998
Q ss_pred HHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHh
Q 011770 169 VLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 169 v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
+++.. -.+++|+||+.|||+++...+... +...... .. ...+.+||++|+|++++.+++
T Consensus 133 l~~~~----------~~~~~I~Rp~~v~G~~~~~~~~~~---~~~~~~~--~~--~~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 133 LQEQG----------WPQLTIARPSLLFGPREEFRLAEI---LAAPIAR--IL--PGKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HTTSC----------CSEEEEEECCSEESTTSCEEGGGG---TTCCCC--------CHHHHHHHHHHHHHHHHHHT
T ss_pred ccccc----------cccceeeCCcceeCCcccccHHHH---HHHHHhh--cc--CCCCcEEEHHHHHHHHHHHHc
Confidence 86421 126899999999999876432211 1111111 11 234577999999999999887
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.89 E-value=1.8e-23 Score=206.93 Aligned_cols=239 Identities=15% Similarity=0.077 Sum_probs=173.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHH-HHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKI-DVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~-~l~~~l~~~D~ViHlAa 87 (478)
++|+|+|||||||||++|+++|+++|++ |+++.|++++.... ....++++.+++|+.|.. .+..++.++|++++...
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~-V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~ 80 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 80 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCe-EEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecc
Confidence 4689999999999999999999999999 99999876653222 234568999999999854 57788899999998764
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHH
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQ 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~ 167 (478)
.. ...|+..+.|++++|.+.|++++|+.||..... . .+..+ ..+|..+|...|.
T Consensus 81 ~~------------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~---~-------~~~~~----~~~~~~~k~~~~~ 134 (350)
T d1xgka_ 81 SQ------------AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHS---L-------YGPWP----AVPMWAPKFTVEN 134 (350)
T ss_dssp ST------------TSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGG---G-------TSSCC----CCTTTHHHHHHHH
T ss_pred cc------------cchhhhhhhHHHHHHHHhCCCceEEEeeccccc---c-------CCccc----chhhhhhHHHHHH
Confidence 21 124677889999999999999999999865321 0 01111 2467889999998
Q ss_pred HHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHH-HHHHcCCC-CeeeCCCCccccceeH-HHHHHHHHHHHh
Q 011770 168 LVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIV-SLAKLGLV-PFKIGEPSVKTDWIYV-DNLVLALILASM 244 (478)
Q Consensus 168 ~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i-~~~~~g~~-~~~~g~g~~~~~~v~V-~Dva~a~~~a~~ 244 (478)
.+.+ .+++++++||+..++.......+.+. .....|.. ...+.+++...+++++ +|+++++..+++
T Consensus 135 ~~~~-----------~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~ 203 (350)
T d1xgka_ 135 YVRQ-----------LGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 203 (350)
T ss_dssp HHHT-----------SSSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHh-----------hccCceeeeeceeeccccccccccccccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHh
Confidence 8754 46789999999988753221110000 11222322 2244667888899986 799999998886
Q ss_pred cccCCCCCCCCCCCCCCceEEecCCCCCCHHHHHHHHHHhcCCCCCcccCCh
Q 011770 245 GLLDDIPGQKGRPIASGQPYFVSDGFPINTFEFIGPLLKTLDYDLPKSWLAV 296 (478)
Q Consensus 245 ~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e~~~~i~~~lg~~~~~~~lp~ 296 (478)
.. .....|+.|++++ +.+|+.|+++.+.+.+|.+.+...+|.
T Consensus 204 ~~---------~~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 204 DG---------PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp HC---------HHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred CC---------hhhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 31 1124688999986 679999999999999999866655653
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=1.1e-19 Score=169.47 Aligned_cols=217 Identities=17% Similarity=0.171 Sum_probs=157.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
++++|++|||||++-||++++++|.++|++ |++.+|+... ..++..+++|++|+++++++++ ++|
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 75 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGA-------PKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVE 75 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCC-------CTTSEEEECCTTCHHHHHHHHHHHHHHHSSCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcch-------hcCceEEEEecCCHHHHHHHHHHHHHhcCCce
Confidence 578999999999999999999999999999 9999987652 2456789999999999887765 589
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
++||+||...... +.++++..+++|+.++..+.+++.+ .+-.++|++||.....+...
T Consensus 76 iLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~-------------- 141 (237)
T d1uzma1 76 VLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGN-------------- 141 (237)
T ss_dssp EEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----C--------------
T ss_pred EEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCcc--------------
Confidence 9999999654322 3456788999999999888776553 45569999999876432111
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
..+|+.||...+.+.+....+ + ..+|+++.++.|+.|..+..........+......+. .-+...
T Consensus 142 --~~~Y~asKaal~~lt~~lA~e-~---~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl---------~R~~~p 206 (237)
T d1uzma1 142 --QANYAASKAGVIGMARSIARE-L---SKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPA---------KRVGTP 206 (237)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCTT---------CSCBCH
T ss_pred --cHHHHHHHHHHHHHHHHHHhh-h---hcCCceeeeeeeCcCCChhhhccCHHHHHHHHhcCCC---------CCCcCH
Confidence 257999999999988765432 1 2578999999999997653221112223333332222 235568
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+|+|+++..++.. ...-..|+++.+.+|-
T Consensus 207 edvA~~v~fL~S~---------~s~~itG~~i~vdGG~ 235 (237)
T d1uzma1 207 AEVAGVVSFLASE---------DASYISGAVIPVDGGM 235 (237)
T ss_dssp HHHHHHHHHHHSG---------GGTTCCSCEEEESTTT
T ss_pred HHHHHHHHHHhCc---------hhcCCcCCeEEECCCC
Confidence 8999999887742 1234679999997763
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=2.9e-19 Score=167.13 Aligned_cols=224 Identities=19% Similarity=0.161 Sum_probs=163.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
++++|+++||||++-||.+++++|.++|++ |++.+|+.... .......+.+++++|++|+++++++++ ++|
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r~~~~l-~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 79 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPL-REAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLD 79 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHH-HHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHH-HHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCce
Confidence 367899999999999999999999999999 99999875421 122234468899999999999988765 589
Q ss_pred EEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
++||+||..... .+.++++..+++|+.|+.++.+++.+. +-.+++.+||... .+. |
T Consensus 80 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~-~~~-------------~-- 143 (242)
T d1ulsa_ 80 GVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVY-LGN-------------L-- 143 (242)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGG-GCC-------------T--
T ss_pred EEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccc-cCC-------------C--
Confidence 999999975433 234567889999999999999988764 3346777776432 111 1
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
...+|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.+..........+......+... +...
T Consensus 144 -~~~~Y~asKaal~~ltk~lA~e-l---a~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R---------~~~p 209 (242)
T d1ulsa_ 144 -GQANYAASMAGVVGLTRTLALE-L---GRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGR---------AGKP 209 (242)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCS---------CBCH
T ss_pred -CCcchHHHHHHHHHHHHHHHHH-H---hhhCcEEEEEeeCcccChhhhcCCHHHHHHHHhcCCCCC---------CCCH
Confidence 1267999999999988765432 2 247899999999999887655444444455544443322 3457
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
+|+++++..++.. ...-..|+++.+.+|..+
T Consensus 210 edia~~v~fL~S~---------~s~~itG~~i~vDGG~t~ 240 (242)
T d1ulsa_ 210 LEVAYAALFLLSD---------ESSFITGQVLFVDGGRTI 240 (242)
T ss_dssp HHHHHHHHHHHSG---------GGTTCCSCEEEESTTTTT
T ss_pred HHHHHHHHHHhch---------hhCCCCCcEEEECCCccC
Confidence 8999999887742 123468999999877643
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.7e-19 Score=168.98 Aligned_cols=223 Identities=18% Similarity=0.118 Sum_probs=162.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~ViH 84 (478)
.+++|++|||||++-||+++++.|.++|++ |++.+|+............++..+.+|++|.++++++++ ++|++||
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVn 82 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVN 82 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEe
Confidence 478999999999999999999999999998 999998755322222334578899999999999999887 5799999
Q ss_pred cccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 85 VASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 85 lAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
+|+...... +.++++..+++|+.++.++.+++.+. +-.++|++||.....+. |. .
T Consensus 83 nAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~-------------~~---~ 146 (244)
T d1pr9a_ 83 NAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV-------------TN---H 146 (244)
T ss_dssp CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-------------TT---B
T ss_pred ccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccc-------------cc---h
Confidence 999754332 34567889999999999988876542 34589999998763211 11 2
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
..|+.||...+.+.+....+ + +.+|+++..+.|+.|..|..... -+...+.+....+. ..+...+
T Consensus 147 ~~Y~asKaal~~lt~~lA~e-l---~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl---------~R~~~pe 213 (244)
T d1pr9a_ 147 SVYCSTKGALDMLTKVMALE-L---GPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPL---------GKFAEVE 213 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTT---------CSCBCHH
T ss_pred hhhhhhHHHHHHHHHHHHHH-h---CCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCC---------CCCcCHH
Confidence 57999999999998766432 2 24789999999999976632111 12233333333322 2355688
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
|+|+++..++.. ...-..|+++.+.+|
T Consensus 214 evA~~v~fL~S~---------~a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 214 HVVNAILFLLSD---------RSGMTTGSTLPVEGG 240 (244)
T ss_dssp HHHHHHHHHHSG---------GGTTCCSCEEEESTT
T ss_pred HHHHHHHHHhCc---------hhCCcCCcEEEECcc
Confidence 999999877742 123468899988776
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=1.6e-19 Score=168.91 Aligned_cols=223 Identities=19% Similarity=0.136 Sum_probs=161.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEEEc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVFHV 85 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~ViHl 85 (478)
+++|++|||||++.||++++++|.++|++ |++.+|+.+..........++..+.+|++|+++++++++ ++|++||+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnn 81 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN 81 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEEC
Confidence 67899999999999999999999999999 999998755322222344678899999999999999887 57999999
Q ss_pred ccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 86 ASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 86 Aa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
||.....+ +..+++..+++|+.++..+.+++.+. +-.++|++||.....+. |. ..
T Consensus 82 Ag~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-------------~~---~~ 145 (242)
T d1cyda_ 82 AALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF-------------PN---LI 145 (242)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-------------TT---BH
T ss_pred CccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC-------------Cc---cc
Confidence 99754332 34567788999999999998876542 33589999998652111 11 25
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCccccceeHHH
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDN 234 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~D 234 (478)
.|+.||...+.+.+....+ + +.+|+++.++-|+.|-.|.... .-+...+.+....+. ..+...+|
T Consensus 146 ~Y~asKaal~~lt~~lA~e-~---~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl---------~R~~~pee 212 (242)
T d1cyda_ 146 TYSSTKGAMTMLTKAMAME-L---GPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPL---------RKFAEVED 212 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTT---------SSCBCHHH
T ss_pred cccchHHHHHHHHHHHHHH-h---CccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCC---------CCCcCHHH
Confidence 7999999999998766432 1 2478999999999986652111 012233333332222 23456889
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 235 LVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 235 va~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+++++..++.. ...-..|+++.|.+|-
T Consensus 213 va~~v~fL~S~---------~s~~itG~~i~vDGG~ 239 (242)
T d1cyda_ 213 VVNSILFLLSD---------RSASTSGGGILVDAGY 239 (242)
T ss_dssp HHHHHHHHHSG---------GGTTCCSSEEEESTTG
T ss_pred HHHHHHHHhCc---------hhcCcCCceEEeCcch
Confidence 99999887642 1234679999987763
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.80 E-value=3.7e-19 Score=167.36 Aligned_cols=227 Identities=15% Similarity=0.094 Sum_probs=164.7
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c--cccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H--LLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~--~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
...++++|.++||||++-||++++++|.++|++ |++.+|+...... . ......+..+++|++|+++++++++
T Consensus 4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~-V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSH-VICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 346788999999999999999999999999998 9999986542111 0 1123468899999999999888775
Q ss_pred ----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+|+...... +..+++..+++|+.++.++.+++.+ .+-.++|++||.....+.+.
T Consensus 83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~------- 155 (251)
T d2c07a1 83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVG------- 155 (251)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT-------
T ss_pred HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCC-------
Confidence 6899999999654322 3356788999999999998887654 45569999999876322111
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCc
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~ 225 (478)
..+|+.||...+.+.+..+.+ + +.+|+++.++.|+.|-.+......+...+.+....+.-
T Consensus 156 ---------~~~Y~asKaal~~ltr~lA~e-l---~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~pl~------- 215 (251)
T d2c07a1 156 ---------QANYSSSKAGVIGFTKSLAKE-L---ASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAG------- 215 (251)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCTTS-------
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHH-h---hhhCeEEEEEccCCEecccccccCHHHHHHHHhcCCCC-------
Confidence 257999999999998776432 2 24799999999999988765544455555555544332
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
-+...+|+|+++..++.. ...-..|+++.+.+|-
T Consensus 216 --R~~~pedvA~~v~fL~S~---------~s~~itG~~i~vDGG~ 249 (251)
T d2c07a1 216 --RMGTPEEVANLACFLSSD---------KSGYINGRVFVIDGGL 249 (251)
T ss_dssp --SCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTS
T ss_pred --CCcCHHHHHHHHHHHhCc---------hhCCCcCcEEEECCCc
Confidence 245678999998877742 1224679999987763
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.7e-19 Score=168.90 Aligned_cols=224 Identities=15% Similarity=0.122 Sum_probs=162.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
+++|+++||||++-||+++++.|.++|++ |++.+|+....... .....+...+++|++|+++++++++ ++|
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAK-VIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVD 80 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcc
Confidence 57899999999999999999999999999 99999875422111 1123467889999999999888775 589
Q ss_pred EEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
++||+|+...... +.++++..+++|+.++..+.+++.+ .+-.++|++||.....+.+.
T Consensus 81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~-------------- 146 (243)
T d1q7ba_ 81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGG-------------- 146 (243)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT--------------
T ss_pred eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCC--------------
Confidence 9999999654332 3456788899999999999998854 34568999999876422111
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
..+|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.+......+.....+....+. ..+...
T Consensus 147 --~~~Y~asKaal~~lt~~lA~e-l---a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl---------~R~~~p 211 (243)
T d1q7ba_ 147 --QANYAAAKAGLIGFSKSLARE-V---ASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPA---------GRLGGA 211 (243)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCTT---------SSCBCH
T ss_pred --CHHHHHHHHHHHHHHHHHHHH-h---CccCeEEEEEecceEechhhhhhhhhHHHHHHhcCCC---------CCCCCH
Confidence 267999999999998766432 2 2479999999999986553222233333344433322 235568
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 233 DNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 233 ~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+|+|+++..++.. ...-..|+++.+.+|-.
T Consensus 212 edvA~~v~fL~S~---------~s~~itGq~i~vdGG~~ 241 (243)
T d1q7ba_ 212 QEIANAVAFLASD---------EAAYITGETLHVNGGMY 241 (243)
T ss_dssp HHHHHHHHHHHSG---------GGTTCCSCEEEESTTSS
T ss_pred HHHHHHHHHHhCc---------hhcCCcCCeEEECCCeE
Confidence 8999999887752 12246899999987743
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=3.5e-19 Score=167.88 Aligned_cols=231 Identities=20% Similarity=0.192 Sum_probs=166.0
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHh
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
|--+.++++++|+++||||++-||++++++|.++|++ |++.+|+...... .......+.++++|++|++++++++
T Consensus 1 m~~~d~m~L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~ 79 (255)
T d1fmca_ 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_dssp CCCGGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHH
Confidence 4444556789999999999999999999999999999 9999986542111 0112356888999999999988776
Q ss_pred c-------CcCEEEEcccCCCCc---hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCC
Q 011770 77 R-------GVDCVFHVASYGMSG---KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~---~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
+ ++|++||+||..... .+.++++..+++|+.|+.++.+++.++ +-.++|++||.....+.
T Consensus 80 ~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~------ 153 (255)
T d1fmca_ 80 DFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN------ 153 (255)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC------
T ss_pred HHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccc------
Confidence 5 689999999965432 234567889999999999988877653 44589999998753221
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-cHHHHHHHHHcCCCCeeeC
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-HLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-~~~~~i~~~~~g~~~~~~g 221 (478)
| ...+|+.||...+.+.+..+.+ + +.+|+++.++-|+.|-.+.... .-+...+.+.+..+.-
T Consensus 154 -------~---~~~~Y~asKaal~~lt~~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~pl~--- 216 (255)
T d1fmca_ 154 -------I---NMTSYASSKAAASHLVRNMAFD-L---GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIR--- 216 (255)
T ss_dssp -------T---TCHHHHHHHHHHHHHHHHHHHH-H---HTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSC---
T ss_pred -------c---ccccchhHHHHHHHHHHHHHHH-h---CccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCCCC---
Confidence 1 1267999999999988765432 1 2579999999999997653222 2233444444433322
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
-+...+|+|+++..++.. ...-..|+++.+.+|.
T Consensus 217 ------R~g~pedvA~~v~fL~S~---------~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 217 ------RLGQPQDIANAALFLCSP---------AASWVSGQILTVSGGG 250 (255)
T ss_dssp ------SCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTS
T ss_pred ------CCcCHHHHHHHHHHHhCc---------hhcCCcCCEEEECcCc
Confidence 244578999999888752 1224689999998875
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=5.3e-19 Score=165.86 Aligned_cols=222 Identities=21% Similarity=0.208 Sum_probs=158.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDC 81 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ 81 (478)
+++|++|||||++-||.++++.|.++|++ |++.+|++... ......+..++++|++|.++++++++ ++|+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~-V~~~~~~~~~~--~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi 79 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLRPEGK--EVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDV 79 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTHH--HHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHH--HHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCe
Confidence 67899999999999999999999999998 99999876522 12223356789999999998887765 6899
Q ss_pred EEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 82 VFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 82 ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
+||+||...... +.++++..+++|+.|+.++.+++.+. +-.++|++||.....+.+
T Consensus 80 LVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~---------------- 143 (248)
T d2d1ya1 80 LVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQ---------------- 143 (248)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCT----------------
T ss_pred EEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccccccc----------------
Confidence 999999654332 34567889999999999999988754 445899999987632211
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
...+|+.||...+.+.+....+ + +.+|+++..+.|+.|-.|.... ......+.+.+..+ ..
T Consensus 144 ~~~~Y~asKaal~~ltk~lA~e-l---~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p---------l~ 210 (248)
T d2d1ya1 144 ENAAYNASKGGLVNLTRSLALD-L---APLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA---------LR 210 (248)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTST---------TS
T ss_pred ccchhHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCC---------CC
Confidence 1267999999999988765432 1 2479999999999986542100 00011122222211 22
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
-+...+|+++++..++.. ...-..|+.+.|.+|-.
T Consensus 211 R~~~pedia~~v~fL~S~---------~s~~itG~~i~vDGG~t 245 (248)
T d2d1ya1 211 RLGKPEEVAEAVLFLASE---------KASFITGAILPVDGGMT 245 (248)
T ss_dssp SCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCc---------hhcCCCCcEEEcCcCcc
Confidence 355689999999887742 12346899999987754
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.79 E-value=7.8e-19 Score=164.72 Aligned_cols=225 Identities=16% Similarity=0.155 Sum_probs=155.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
++++|+++||||++-||+++++.|.++|++ |++.+|++...... .....++.++++|++|+++++++++ +
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999998 99999876532111 1233568899999999999888764 6
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
+|++||+||...... +.++++..+++|+.|+.++.+++.+ .+-.++|++||.+...+. |
T Consensus 81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~-------------~ 147 (247)
T d2ew8a1 81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI-------------E 147 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC-------------S
T ss_pred CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccC-------------c
Confidence 899999999754332 3457788999999999999887764 355689999998763211 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCCCccccc
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
. ..+|+.||...+.+.+....+ + +.+|+++.++.|+.|-.|...... ....+...... ....-+
T Consensus 148 ~---~~~Y~asKaal~~ltk~lA~e-l---a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~--------~~l~r~ 212 (247)
T d2ew8a1 148 A---YTHYISTKAANIGFTRALASD-L---GKDGITVNAIAPSLVRTATTEASALSAMFDVLPNML--------QAIPRL 212 (247)
T ss_dssp S---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCC------------------CTT--------SSSCSC
T ss_pred c---cccchhhhccHHHHHHHHHHH-h---cccCeEEEEEeeCCCCCccccccccchhHHHHHHHh--------ccCCCC
Confidence 1 257999999999988765432 2 247899999999999776433211 11111111110 111224
Q ss_pred eeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 230 IYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 230 v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
...+|+|++++.++.. ...-..|++..|.+|-
T Consensus 213 ~~pedvA~~v~fL~S~---------~s~~itG~~i~vDGG~ 244 (247)
T d2ew8a1 213 QVPLDLTGAAAFLASD---------DASFITGQTLAVDGGM 244 (247)
T ss_dssp CCTHHHHHHHHHHTSG---------GGTTCCSCEEEESSSC
T ss_pred CCHHHHHHHHHHHhCc---------hhcCCcCCeEEECCCE
Confidence 4578999999877642 1224679999987763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.1e-18 Score=163.79 Aligned_cols=225 Identities=18% Similarity=0.182 Sum_probs=160.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVD 80 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D 80 (478)
++++|+++||||++-||+++++.|+++|++ |++.+|+............++.++++|++|+++++++++ ++|
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 81 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLD 81 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 578999999999999999999999999999 999998754322222334678899999999999888775 589
Q ss_pred EEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 81 CVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 81 ~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
++||+|+..... .+.++++..+++|+.|+.++.+++.+. +-.++|++||.....+.+
T Consensus 82 ilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~~--------------- 146 (250)
T d1ydea1 82 CVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQA--------------- 146 (250)
T ss_dssp EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCT---------------
T ss_pred EEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccccccccccc---------------
Confidence 999999954321 133457888999999999999887653 225899999987632211
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
...+|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.|..+ ......++......+.
T Consensus 147 -~~~~Y~asKaal~~lt~~lA~e-~---a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl--------- 212 (250)
T d1ydea1 147 -QAVPYVATKGAVTAMTKALALD-E---SPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPL--------- 212 (250)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTT---------
T ss_pred -CcchhHHHHhhHHHHHHHHHHH-h---cccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCC---------
Confidence 1267999999999988766432 1 247899999999998654210 0111222222222222
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.-+...+|+|+++..++.. ..-..|+++.|.+|..+
T Consensus 213 ~R~g~p~eva~~v~fL~Sd----------a~~itG~~i~vDGG~~l 248 (250)
T d1ydea1 213 GRMGQPAEVGAAAVFLASE----------ANFCTGIELLVTGGAEL 248 (250)
T ss_dssp SSCBCHHHHHHHHHHHHHH----------CTTCCSCEEEESTTTTS
T ss_pred CCCCCHHHHHHHHHHHhCc----------cCCCcCCeEEECCCccc
Confidence 2355688999999877641 12468999999887543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.2e-18 Score=163.77 Aligned_cols=225 Identities=18% Similarity=0.191 Sum_probs=161.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++++|+++||||++.||+++++.|+++|++ |++.+|+....... ......+.++++|++|+++++++++
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478899999999999999999999999998 99999875432110 1123467889999999999888775
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+||.....+ +.++++..+++|+.|+.++.+++.+. +-.++|++||......+.
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~---------- 150 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTM---------- 150 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCS----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccC----------
Confidence 6899999999754332 44567889999999999999987764 445899999865421111
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCCc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPSV 225 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~~ 225 (478)
| ...+|+.||...+.+.+....+ + +.+|+++.++.|+.|-.+...... +...+.+.+..+...
T Consensus 151 --~---~~~~Y~asKaal~~lt~~lA~e-~---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R------ 215 (251)
T d1vl8a_ 151 --P---NISAYAASKGGVASLTKALAKE-W---GRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGR------ 215 (251)
T ss_dssp --S---SCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSS------
T ss_pred --c---cccchHHHHHhHHHHHHHHHHH-h---cccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCC------
Confidence 0 1257999999999998766432 2 247899999999999776543211 233344444333322
Q ss_pred cccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 226 KTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 226 ~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+...+|+|++++.++.. ...-..|+++.|.+|-
T Consensus 216 ---~~~pedvA~~v~fL~S~---------~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 216 ---TGVPEDLKGVAVFLASE---------EAKYVTGQIIFVDGGW 248 (251)
T ss_dssp ---CBCGGGGHHHHHHHHSG---------GGTTCCSCEEEESTTG
T ss_pred ---CCCHHHHHHHHHHHhCc---------hhCCCcCcEEEeCcCe
Confidence 33467999998877642 1224679999997764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.78 E-value=7e-19 Score=165.98 Aligned_cols=227 Identities=18% Similarity=0.194 Sum_probs=160.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++|+++||||++-||+++++.|+++|++ |++.+|+....... .....++.++++|++|+++++++++ ++
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i 80 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGAR-VAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSI 80 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 367899999999999999999999999998 99999875421111 1124568899999999999988775 68
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|++||+||...... +.++++..+++|+.|+..+.+++... +-.++|++||.+...+.+
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~------------- 147 (256)
T d1k2wa_ 81 DILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEA------------- 147 (256)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-------------
T ss_pred cEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccc-------------
Confidence 99999999654332 34567888999999999999875532 235899999987632111
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHH-----------HHHHHHcCCCCee
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPR-----------IVSLAKLGLVPFK 219 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~-----------~i~~~~~g~~~~~ 219 (478)
. ..+|+.||...+.+.+....+ + +.+|+++..+.|+.+-.|........ ..+.+....+.
T Consensus 148 ~---~~~Y~asKaal~~lt~~lA~e-l---~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl-- 218 (256)
T d1k2wa_ 148 L---VGVYCATKAAVISLTQSAGLN-L---IRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPF-- 218 (256)
T ss_dssp T---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTT--
T ss_pred c---ccchhhhhhHHHHHHHHHHHH-h---cccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCC--
Confidence 1 267999999999998766432 2 24789999999998877642211111 11111111111
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.-+...+|+|++++.++.. ...-..|+++.|.+|..+|
T Consensus 219 -------gR~~~p~evA~~v~fL~S~---------~a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 219 -------GRMGRAEDLTGMAIFLATP---------EADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp -------SSCBCHHHHHHHHHHTTSG---------GGTTCCSCEEEESTTSSCC
T ss_pred -------CCCcCHHHHHHHHHHHhCc---------hhCCccCceEEECcchhhC
Confidence 2345678999999876541 1224679999998886553
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=1.3e-18 Score=162.56 Aligned_cols=220 Identities=16% Similarity=0.188 Sum_probs=159.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++|+++||||++-||+++++.|+++|++ |++.+|++...... ......+.++++|++|+++++++++ ++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 478899999999999999999999999999 99999875422111 1123568889999999999887775 58
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|++||+|+...... +..+++..+++|+.|+.++.+++.+ .+-.++|++||.....+.+.
T Consensus 82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~------------- 148 (244)
T d1nffa_ 82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVA------------- 148 (244)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-------------
T ss_pred eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccccccc-------------
Confidence 99999999754332 3456788999999999999887654 34568999999876322110
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||...+.+.+....+ + ..+|+++..+-|+.|-.|..... ... . .......+..
T Consensus 149 ---~~~Y~asKaal~~ltk~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~--------~~~----~--~~~pl~R~~~ 207 (244)
T d1nffa_ 149 ---CHGYTATKFAVRGLTKSTALE-L---GPSGIRVNSIHPGLVKTPMTDWV--------PED----I--FQTALGRAAE 207 (244)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCSGGGTTS--------CTT----C--SCCSSSSCBC
T ss_pred ---ccchhhHHHHHHHHHHHHHHH-h---cccCEEEEEEeeCCccChhHhhh--------hHH----H--HhccccCCCC
Confidence 257999999999998766532 2 24789999999999976632210 000 0 0012234678
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.+|+|+++..++.. ...-..|+++.|.+|..
T Consensus 208 p~diA~~v~fL~s~---------~s~~itG~~i~vDGG~~ 238 (244)
T d1nffa_ 208 PVEVSNLVVYLASD---------ESSYSTGAEFVVDGGTV 238 (244)
T ss_dssp HHHHHHHHHHHHSG---------GGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCh---------hhCCCcCCEEEECCCee
Confidence 89999999887742 12346799999987753
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.77 E-value=2e-18 Score=163.20 Aligned_cols=226 Identities=15% Similarity=0.187 Sum_probs=160.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
.+++|+++||||++-||.+++++|.++|++ |++.+|+....... ......+..+++|++|+++++++++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999 99999875421111 1123457889999999999888775
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCC-eEEEEeccceeeCCccccCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQ-RLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~-r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+|+...... +.++++..+++|+.|+.++.+++.+ .+-. ++|++||.+...+.
T Consensus 83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~---------- 152 (261)
T d1geea_ 83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW---------- 152 (261)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC----------
T ss_pred hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccC----------
Confidence 6899999999754332 3456788899999999998887754 3433 58899997652111
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~ 224 (478)
|. ...|+.||...+.+.+..+.+ + +.+|+++.++.|+.|..|...... +.....+.+..+.
T Consensus 153 ---~~---~~~Y~asKaal~~lt~~lA~e-~---~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl------- 215 (261)
T d1geea_ 153 ---PL---FVHYAASKGGMKLMTETLALE-Y---APKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPM------- 215 (261)
T ss_dssp ---TT---CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTT-------
T ss_pred ---cc---ccccccCCccchhhHHHHHHH-h---hhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCC-------
Confidence 11 257999999999988766432 2 247899999999999766432111 2223333333322
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.-+...+|+|+++..++.. ...-..|+++.|.+|..+
T Consensus 216 --~R~~~pediA~~v~fL~S~---------~s~~itG~~i~vDGG~sl 252 (261)
T d1geea_ 216 --GYIGEPEEIAAVAAWLASS---------EASYVTGITLFADGGMTL 252 (261)
T ss_dssp --SSCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTGGG
T ss_pred --CCCCCHHHHHHHHHHHhCc---------hhcCCcCCeEEECCCeeC
Confidence 1245678999999887752 123468999999887643
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.77 E-value=3.5e-18 Score=160.70 Aligned_cols=225 Identities=18% Similarity=0.183 Sum_probs=157.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
.+++|+++||||++-||.+++++|+++|++ |++.+|+....... ......+.++++|++|+++++++++ ++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence 368999999999999999999999999999 99999875422111 1123468899999999999888775 68
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|++||+|+...... +.++++..+++|+.|+.++.+++.+ .+-.++|++||.....+..
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~-------------- 146 (254)
T d1hdca_ 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLA-------------- 146 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------------
T ss_pred cEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhccccc--------------
Confidence 99999999754332 3456778899999999999998754 3556999999987632211
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc-e
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW-I 230 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~-v 230 (478)
....|+.||...+.+.+..+.+ + +.+|+++.++.|+.|..|. ............... ....-+ .
T Consensus 147 --~~~~Y~asKaal~~lt~~lA~e-~---a~~gIrVN~I~PG~v~T~~--------~~~~~~~~~~~~~~~-~pl~R~g~ 211 (254)
T d1hdca_ 147 --LTSSYGASKWGVRGLSKLAAVE-L---GTDRIRVNSVHPGMTYTPM--------TAETGIRQGEGNYPN-TPMGRVGN 211 (254)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCHH--------HHHHTCCCSTTSCTT-STTSSCB-
T ss_pred --chhhHHHHHHHHHHHHHHHHHH-h---CCCceEEEEeeeCcccCcc--------chhcCHHHHHHHHhC-CCCCCCCC
Confidence 1267999999999998766532 2 2478999999999996541 111111000000000 001112 3
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+|+|++++.++.. ...-..|+++.|.+|-.
T Consensus 212 ~PedvA~~v~fL~S~---------~a~~itG~~i~vDGG~t 243 (254)
T d1hdca_ 212 EPGEIAGAVVKLLSD---------TSSYVTGAELAVDGGWT 243 (254)
T ss_dssp CHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhch---------hhCCCCCceEEeCCCcc
Confidence 468999999887742 12246899999988753
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.77 E-value=1.3e-18 Score=164.34 Aligned_cols=230 Identities=18% Similarity=0.157 Sum_probs=149.4
Q ss_pred CcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 4 SENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 4 ~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
|+..++++|+++||||++-||.++++.|+++|++ |++.+|+....... .....++..+.+|++|+++++++++
T Consensus 1 s~~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 1 SQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTV 79 (259)
T ss_dssp CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHH
Confidence 3456789999999999999999999999999998 99999875421110 1123468899999999988877653
Q ss_pred ------CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCC
Q 011770 78 ------GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 ------~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
.+|++||+||..... .+..+++..+++|+.|+.++.+++.+ .+-.++|++||.....+.+.
T Consensus 80 ~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~----- 154 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASV----- 154 (259)
T ss_dssp HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---------------
T ss_pred HHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccccc-----
Confidence 379999999965432 24456788999999999999887764 35569999999876322111
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-HHHHHHHcCCCCeeeCC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-RIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-~~i~~~~~g~~~~~~g~ 222 (478)
...|+.||...+.+.+..+.+ + +.+|+++.++-|+.|-.|......+ ...+.+....+.
T Consensus 155 -----------~~~Y~asKaal~~lt~~lA~e-~---~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~pl----- 214 (259)
T d1xq1a_ 155 -----------GSIYSATKGALNQLARNLACE-W---ASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPL----- 214 (259)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEECCSCC---------------------------
T ss_pred -----------cccccccccchhhhhHHHHHH-h---cccCeEEEEeccCcccCHHhhhhchHHHHHHHHhCCCC-----
Confidence 257999999999988765432 1 2578999999999997764332211 111222222111
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.-+...+|+|++++.++.. ...-..|+...|.+|-.+
T Consensus 215 ----~R~~~pedvA~~v~fL~S~---------~s~~iTG~~i~vDGG~s~ 251 (259)
T d1xq1a_ 215 ----GRFGEPEEVSSLVAFLCMP---------AASYITGQTICVDGGLTV 251 (259)
T ss_dssp -------CCGGGGHHHHHHHTSG---------GGTTCCSCEEECCCCEEE
T ss_pred ----CCCcCHHHHHHHHHHHhCc---------hhcCCcCcEEEeCCCEEC
Confidence 2244577999998877642 122467889888877544
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.77 E-value=1.7e-18 Score=163.83 Aligned_cols=231 Identities=13% Similarity=0.147 Sum_probs=155.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++|++|||||++-||++++++|+++|++ |++.+|++...... .....++.++++|++|+++++++++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999998 99999875422111 1123468889999999999988775
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+||...... +..+++..+++|+.|+.++.+++.+ .+-.++|++||.....+.+
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~---------- 150 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA---------- 150 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccC----------
Confidence 5899999999754332 3456788999999999988887654 3556999999987632211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcC--C-CCeeeCCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLG--L-VPFKIGEPS 224 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g--~-~~~~~g~g~ 224 (478)
. ..+|+.||...+.+.+....+ + +.+|+++..+.|+.|-.|.....+.......... . ....+....
T Consensus 151 ---~---~~~Y~asKaal~~lt~~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T d1x1ta1 151 ---N---KSAYVAAKHGVVGFTKVTALE-T---AGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQ 220 (260)
T ss_dssp ---T---CHHHHHHHHHHHHHHHHHHHH-H---TTTTEEEEEEEECCBCC------------------------CHHHHC
T ss_pred ---C---cchhhhhhhhHHHhHHHHHHH-h---chhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcC
Confidence 1 257999999999988766432 1 2579999999999997664332221111000000 0 000000001
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...-+...+|+|++++.++.. ...-..|++..+.+|
T Consensus 221 Pl~R~g~pediA~~v~fL~S~---------~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 221 PSLQFVTPEQLGGTAVFLASD---------AAAQITGTTVSVDGG 256 (260)
T ss_dssp TTCCCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTT
T ss_pred CCCCCcCHHHHHHHHHHHhCh---------hhCCCcCCEEEECcc
Confidence 122356789999999887752 123468999998876
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.77 E-value=6.1e-18 Score=159.53 Aligned_cols=226 Identities=17% Similarity=0.178 Sum_probs=161.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
++++|+++||||++-||+++++.|+++|++ |++.+|+...... .......+..+++|++|+++++++++
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999 9999987542111 01123467889999999999888765
Q ss_pred ---CcCEEEEcccCCCC-c----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMS-G----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~-~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+||.... . .+..+++..+++|+.|+.++.+++.+ .+-.++|++||.....+.
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~--------- 150 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI--------- 150 (258)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC---------
T ss_pred HhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCC---------
Confidence 68999999996432 1 13456788999999999999987754 345689999998763221
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC--------cHHHHHHHHHcCCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER--------HLPRIVSLAKLGLVP 217 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~--------~~~~~i~~~~~g~~~ 217 (478)
| ...+|+.||...+.+.+....+ + +.+|+++..+.|+.|..|.... ......+.+....+.
T Consensus 151 ----~---~~~~Y~asKaal~~lt~~lA~e-l---~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl 219 (258)
T d1iy8a_ 151 ----G---NQSGYAAAKHGVVGLTRNSAVE-Y---GRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPS 219 (258)
T ss_dssp ----S---SBHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTT
T ss_pred ----C---CchHHHHHHHHHHHHHHHHHHH-h---CccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCC
Confidence 1 1267999999999988765432 2 2478999999999997652111 112223333333222
Q ss_pred eeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 218 FKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 218 ~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.-+...+|+|++++.++.. ...-..|++..|.+|..-
T Consensus 220 ---------~R~~~p~dvA~~v~fL~S~---------~s~~itG~~i~VDGG~sa 256 (258)
T d1iy8a_ 220 ---------KRYGEAPEIAAVVAFLLSD---------DASYVNATVVPIDGGQSA 256 (258)
T ss_dssp ---------CSCBCHHHHHHHHHHHTSG---------GGTTCCSCEEEESTTTTT
T ss_pred ---------CCCcCHHHHHHHHHHHhCc---------hhcCCcCceEEcCcchhc
Confidence 2345688999999887742 123468999999887653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.77 E-value=2.2e-18 Score=163.03 Aligned_cols=234 Identities=17% Similarity=0.137 Sum_probs=162.5
Q ss_pred cCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 5 ENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 5 ~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
+++++++|++|||||++-||.++++.|+++|++ |++.+|+....... .....++.++++|++|+++++++++
T Consensus 3 ~~m~l~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 81 (260)
T d1h5qa_ 3 FTISFVNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQI 81 (260)
T ss_dssp EEECCTTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CcccCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence 345688999999999999999999999999998 99999987643211 1123568899999999999888775
Q ss_pred -----CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----C-CCeEEEEeccceeeCCccccCCC
Q 011770 78 -----GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----G-IQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~-v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
++|++||+|+...... +..+++..+++|+.|+.++.+++.+. + -.+++..||............
T Consensus 82 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~~-- 159 (260)
T d1h5qa_ 82 DADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLN-- 159 (260)
T ss_dssp HHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETT--
T ss_pred HHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccccc--
Confidence 5899999999654322 34467788999999999988876542 3 335666666544211111000
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g 223 (478)
..| ....|+.||...+.+.+....+ + +.+|+++.++.|+.|-.+......+...+......+...
T Consensus 160 ----~~~---~~~~Y~asKaal~~lt~~lA~e-l---~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R---- 224 (260)
T d1h5qa_ 160 ----GSL---TQVFYNSSKAACSNLVKGLAAE-W---ASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNR---- 224 (260)
T ss_dssp ----EEC---SCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSS----
T ss_pred ----cCc---cccchhhhhhhHHHHHHHHHHH-h---chhCeEEeecCCCcccCcchhccCHHHHHHHHhcCCCCC----
Confidence 001 1257999999999988765431 1 247899999999999766544344455555555443322
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+...+|+|+++..++.. ...-..|+++.+.+|.
T Consensus 225 -----~g~pedvA~~v~fL~S~---------~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 225 -----FAQPEEMTGQAILLLSD---------HATYMTGGEYFIDGGQ 257 (260)
T ss_dssp -----CBCGGGGHHHHHHHHSG---------GGTTCCSCEEEECTTG
T ss_pred -----CcCHHHHHHHHHHHhcc---------hhCCCcCceEEECCCe
Confidence 34467999998877642 1224679999998775
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.76 E-value=6.8e-18 Score=159.33 Aligned_cols=225 Identities=17% Similarity=0.160 Sum_probs=159.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++++|+++||||++-||+++++.|.++|++ |++.+|+....... ......+.++++|++|+++++++++
T Consensus 4 f~L~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 4 WNLEGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999998 99999865421110 1123457889999999998877653
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
.+|++||+||...... +.++++..+++|+.|+.++.+++.+. +-.++|++||.....+.
T Consensus 83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~---------- 152 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV---------- 152 (259)
T ss_dssp TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC----------
T ss_pred hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccccc----------
Confidence 3799999999654332 34567889999999999988887653 44589999998752111
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHHHHHcCCCCeeeC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~~~~~g~~~~~~g 221 (478)
|. ..+|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.|.... .....++.+....+.-
T Consensus 153 ---~~---~~~Y~asKaal~~lt~~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~--- 219 (259)
T d2ae2a_ 153 ---PY---EAVYGATKGAMDQLTRCLAFE-W---AKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR--- 219 (259)
T ss_dssp ---TT---CHHHHHHHHHHHHHHHHHHHH-T---GGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTC---
T ss_pred ---cc---ccchHHHHHHHHHHHHHHHHH-h---CcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCC---
Confidence 11 267999999999998776532 2 2479999999999996552110 1122333333333322
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
-+...+|+|++++.++.. ...-..|+++.|.+|-
T Consensus 220 ------R~g~pedvA~~v~fL~S~---------~s~~itG~~i~VDGG~ 253 (259)
T d2ae2a_ 220 ------RMGEPKELAAMVAFLCFP---------AASYVTGQIIYVDGGL 253 (259)
T ss_dssp ------SCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTG
T ss_pred ------CCcCHHHHHHHHHHHhCc---------hhCCCcCcEEEECCCe
Confidence 244578999999877652 1224678999987764
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.76 E-value=6.2e-18 Score=158.88 Aligned_cols=225 Identities=15% Similarity=0.193 Sum_probs=157.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++++|+++||||++-||+++++.|.++|++ |++.+|+...... ......++.++++|++|+++++++++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999999 9999986542111 11234568999999999998887765
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCC-eEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQ-RLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~-r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+|+...... +.++++..+++|+.|+.++.+++.+. +.. ++|++||.....+.
T Consensus 82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~------------ 149 (251)
T d1zk4a1 82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD------------ 149 (251)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC------------
T ss_pred CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC------------
Confidence 5899999999754332 34567789999999999999987653 333 78999998653211
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCC-CCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCCCcc
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGR-PFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~-~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
|. ...|+.||...+.+.+..+.+ .+ ..+|+++..+.|+.|-.|...... +.......... ..
T Consensus 150 -~~---~~~Y~asKaal~~lt~~lA~e~~l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~---------pl 213 (251)
T d1zk4a1 150 -PS---LGAYNASKGAVRIMSKSAALDCAL---KDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKT---------PM 213 (251)
T ss_dssp -TT---CHHHHHHHHHHHHHHHHHHHHHHH---TTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTC---------TT
T ss_pred -CC---chhHHHHHHHHhcchHHHHHHHhc---CCCcEEEEEEeCCCCCChhHHhcCCHHHHHHHHhCC---------CC
Confidence 11 257999999999887754321 01 157999999999999765321111 11111111111 11
Q ss_pred ccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 227 TDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.-+...+|+|++++.++.. ...-..|+.+.|.+|-
T Consensus 214 ~R~~~pedvA~~v~fL~S~---------~s~~itG~~i~vDGG~ 248 (251)
T d1zk4a1 214 GHIGEPNDIAYICVYLASN---------ESKFATGSEFVVDGGY 248 (251)
T ss_dssp SSCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhCc---------hhCCCcCcEEEECccc
Confidence 2356789999999877642 1224679999987763
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.75 E-value=1.8e-17 Score=157.29 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=162.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
++++|++|||||++-||.+++++|+++|++ |++.+|+...... .......+.++++|++|+++++++++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG 81 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 588999999999999999999999999999 9999987542111 11223458889999999999888775
Q ss_pred CcCEEEEcccCCCCc------hhhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 GVDCVFHVASYGMSG------KEMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~------~~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+||..... .+.++++..+++|+.|+..+.+++.+. +-.++|++||...+.+...
T Consensus 82 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~--------- 152 (268)
T d2bgka1 82 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEG--------- 152 (268)
T ss_dssp CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT---------
T ss_pred CcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccc---------
Confidence 689999999964322 123467788999999999999887653 4458999999876322111
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc----HHHHHHHHHcCCCCeeeCCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH----LPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~----~~~~i~~~~~g~~~~~~g~g 223 (478)
. ...|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.|..... -...-........+ .
T Consensus 153 ---~---~~~Y~asKaal~~lt~~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~--~--- 217 (268)
T d2bgka1 153 ---V---SHVYTATKHAVLGLTTSLCTE-L---GEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANL--K--- 217 (268)
T ss_dssp ---S---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSS--C---
T ss_pred ---c---ccccchhHHHHHhCHHHHHHH-h---ChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhcccc--C---
Confidence 0 146999999999998766432 2 24789999999999988754321 12222222222111 1
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
.-+...+|+|++++.++.. ...-..|+++.|.+|-..+
T Consensus 218 ---gr~~~pedvA~~v~fL~S~---------~s~~itGq~i~VDGG~t~~ 255 (268)
T d2bgka1 218 ---GTLLRAEDVADAVAYLAGD---------ESKYVSGLNLVIDGGYTRT 255 (268)
T ss_dssp ---SCCCCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTGGGC
T ss_pred ---CCCcCHHHHHHHHHHHhCh---------hhCCccCceEEECcCcccC
Confidence 1245689999999887742 1234689999998875443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.75 E-value=7.7e-18 Score=159.12 Aligned_cols=223 Identities=19% Similarity=0.178 Sum_probs=158.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++|+++||||++-||.++++.|.++|++ |++.+|+...... ......++..+++|++|+++++++++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999 9999987542111 01123468889999999998887775
Q ss_pred -CcCEEEEcccCCCC-c----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 -GVDCVFHVASYGMS-G----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 -~~D~ViHlAa~~~~-~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+||.... . .+.++++..+++|+.++.++.+++.+ .+-.++|++||.....+.+
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~---------- 150 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP---------- 150 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT----------
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCc----------
Confidence 68999999996432 2 23456788999999999999888764 3456999999987642211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC---------------C-cHHHHHHHH
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE---------------R-HLPRIVSLA 211 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~---------------~-~~~~~i~~~ 211 (478)
. ..+|+.||...+.+.+....+ + +.+|+++..+.|+.|-.+... . ....+.+.+
T Consensus 151 ---~---~~~Y~asKaal~~ltk~lA~e-l---~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T d1zema1 151 ---N---MAAYGTSKGAIIALTETAALD-L---APYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQM 220 (260)
T ss_dssp ---T---BHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHH
T ss_pred ---c---hHHHHHHHHHHHHHHHHHHHH-h---hhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHH
Confidence 1 257999999999988766432 2 247899999999999665210 1 112233333
Q ss_pred HcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 212 KLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 212 ~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
....+.- -+...+|+|+++..++.. ...-..|+++.|.+|
T Consensus 221 ~~~~Pl~---------R~g~pedvA~~v~fL~S~---------~s~~itG~~i~VDGG 260 (260)
T d1zema1 221 IGSVPMR---------RYGDINEIPGVVAFLLGD---------DSSFMTGVNLPIAGG 260 (260)
T ss_dssp HHTSTTS---------SCBCGGGSHHHHHHHHSG---------GGTTCCSCEEEESCC
T ss_pred HhcCCCC---------CCcCHHHHHHHHHHHhCc---------hhcCccCCeEEeCCC
Confidence 3333322 244577999998877752 122467888888654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.75 E-value=1.1e-17 Score=157.74 Aligned_cols=220 Identities=18% Similarity=0.132 Sum_probs=158.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+|.+|||||++-||.+++++|+++|++ |++.+|+....... ......+.++++|++|+++++++++ ++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 578899999999999999999999999 99999875421110 1123468899999999999888775 58
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH------cCCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE------FGIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~------~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
|++||+||...... +.++++..+++|+.|+.++.+++.+ .+-.++|++||.....+.+
T Consensus 81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~------------ 148 (257)
T d2rhca1 81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVV------------ 148 (257)
T ss_dssp SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCT------------
T ss_pred CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccc------------
Confidence 99999999754332 3456788999999999999998865 2445899999987632211
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----------cHHHHHHHHHcCCCCe
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----------HLPRIVSLAKLGLVPF 218 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----------~~~~~i~~~~~g~~~~ 218 (478)
...+|+.||...+.+.+..+.+ + +.+|+++.++.|+.|-.|.... ..+...+.+....+.
T Consensus 149 ----~~~~Y~asKaal~~ltk~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Pl- 219 (257)
T d2rhca1 149 ----HAAPYSASKHGVVGFTKALGLE-L---ARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPI- 219 (257)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHH-T---TTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTT-
T ss_pred ----cchhHHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCC-
Confidence 1267999999999998776532 2 2579999999999996542111 112233333333322
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
.-+...+|+|+++..++.. ...-..|+.+.|.+|
T Consensus 220 --------gR~~~pedia~~v~fL~S~---------~s~~itG~~i~vDGG 253 (257)
T d2rhca1 220 --------GRYVQPSEVAEMVAYLIGP---------GAAAVTAQALNVCGG 253 (257)
T ss_dssp --------SSCBCHHHHHHHHHHHTSG---------GGTTCCSCEEEESTT
T ss_pred --------CCCcCHHHHHHHHHHHhCc---------hhcCCcCceEEECcC
Confidence 2355688999999887742 123467899998776
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.74 E-value=1.4e-17 Score=157.00 Aligned_cols=224 Identities=17% Similarity=0.158 Sum_probs=158.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++++|++|||||++-||++++++|+++|++ |++.+|++..... .......+.++++|++|.++++++++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~-V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999998 9999987642111 11123557789999999998877654
Q ss_pred --CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
.+|++||+|+..... .+..++...+++|+.++.++.+++.. .+..++|++||.....+.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~----------- 150 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL----------- 150 (258)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC-----------
T ss_pred CCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccccc-----------
Confidence 379999999965432 24456788999999999999887764 356699999998763111
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc------HHHHHHHHHcCCCCeeeC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH------LPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~------~~~~i~~~~~g~~~~~~g 221 (478)
|. ..+|+.+|...+.+.+..+.+ + +.+|+++.++.|+.|..|..... .....+.+....+.
T Consensus 151 --~~---~~~Y~~sK~al~~lt~~lA~e-l---~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---- 217 (258)
T d1ae1a_ 151 --PS---VSLYSASKGAINQMTKSLACE-W---AKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM---- 217 (258)
T ss_dssp --TT---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTT----
T ss_pred --cc---chhHHHHHHHHHHHHHHHHHh-c---CcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCC----
Confidence 11 257999999999998776532 1 24789999999999987753321 12233333332222
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..+...+|+|+++..++.. ...-..|+.+.|.+|-
T Consensus 218 -----gR~~~pediA~~v~fL~S~---------~s~~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 218 -----GRAGKPQEVSALIAFLCFP---------AASYITGQIIWADGGF 252 (258)
T ss_dssp -----CSCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTG
T ss_pred -----CCCcCHHHHHHHHHHHhCh---------hhCCCcCcEEEeCCCe
Confidence 2366789999999888742 1224678888887764
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.74 E-value=1.1e-17 Score=156.18 Aligned_cols=224 Identities=20% Similarity=0.145 Sum_probs=160.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
.+++|+++||||++.||++++++|.++|++ |++.+|+....... ......+.++++|++|+++++++++ ++
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGAS-LVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 367899999999999999999999999999 99999876522111 1224568889999999999987765 58
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
|++||+|+...... +..+++..+++|+.++.++.+++...- -+.++.+||.+. ... |
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~-~~~-------------~--- 143 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG-LGA-------------F--- 143 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT-CCH-------------H---
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccc-ccc-------------c---
Confidence 99999998643322 345667889999999999999987763 224444444432 111 1
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
....|+.+|...|.+.+..+.+ + +.+|+++.++.|+.|=.+......+...+...+..+. .-+...+
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~e-l---~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p~---------~r~~~p~ 210 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALE-L---ARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPL---------GRAGRPE 210 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHH-H---TTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTT---------CSCBCHH
T ss_pred CccccchhhHHHHHHHHHHHHH-H---hHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhCCCC---------CCCcCHH
Confidence 1257999999999999776432 1 2578999999999996654333334444444443332 2355689
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
|+|+++..++.. ...-..|++..+.+|..
T Consensus 211 dva~~v~fL~S~---------~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 211 EVAQAALFLLSE---------ESAYITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHSG---------GGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHhcc---------hhCCCcCceEEeCCCcc
Confidence 999999888752 12346899999988764
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.74 E-value=9.1e-18 Score=157.01 Aligned_cols=221 Identities=16% Similarity=0.145 Sum_probs=157.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+.||||||++-||++++++|+++|++ |++.+++....... .....++.++++|++|+++++++++ ++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999 98877665422111 1123568889999999999888765 68
Q ss_pred CEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 80 D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
|++||+|+..... .+.++++..+++|+.|+.++.+++.+ .+-.++|++||.....+.+.
T Consensus 81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~------------- 147 (244)
T d1edoa_ 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIG------------- 147 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT-------------
T ss_pred CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCC-------------
Confidence 9999999965433 24456788999999999999888765 35569999999876432111
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcccccee
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIY 231 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~ 231 (478)
...|+.||...+.+.+..+.+ + +.+|+++.++.|+.+-.|......+...+.+....+. .-+..
T Consensus 148 ---~~~Y~asKaal~~ltk~lA~e-l---~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl---------~R~~~ 211 (244)
T d1edoa_ 148 ---QANYAAAKAGVIGFSKTAARE-G---ASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPL---------GRTGQ 211 (244)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-H---HTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTT---------CSCBC
T ss_pred ---CHHHHHHHHHHHHChHHHHHH-H---hhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcCCC---------CCCcC
Confidence 257999999999988766432 2 2579999999999986553222233344444443332 23456
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 232 VDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 232 V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.+|+|+++..++... ...-..|+++.+.+|-
T Consensus 212 p~dvA~~v~fLa~S~--------~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 212 PENVAGLVEFLALSP--------AASYITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHHHHCS--------GGGGCCSCEEEESTTT
T ss_pred HHHHHHHHHHHHCCc--------hhcCCcCCeEEeCCCe
Confidence 789999998764210 1224678999887764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.73 E-value=2.2e-17 Score=155.56 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=155.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
+|.+|||||++-||++++++|.++|++ |++.+|++...... .....++.++++|++|+++++++++ ++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 356799999999999999999999998 99999875421110 1123468889999999999888765 58
Q ss_pred CEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cC-CCeEEEEeccceeeCCccccCCCCCCCCCC
Q 011770 80 DCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FG-IQRLVYVSTYNVVFGGKEIVNGNESLPYFP 150 (478)
Q Consensus 80 D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~-v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p 150 (478)
|++||+||.....+ +.++++..+++|+.|+.++.+++.+ .+ -.++|++||.....+. |
T Consensus 80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~-------------~ 146 (255)
T d1gega_ 80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN-------------P 146 (255)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-------------T
T ss_pred cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccC-------------c
Confidence 99999999754332 3456788999999999999988654 23 3479999997753211 1
Q ss_pred CCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH-----------HHHHHHHcCCCCee
Q 011770 151 IDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP-----------RIVSLAKLGLVPFK 219 (478)
Q Consensus 151 ~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~-----------~~i~~~~~g~~~~~ 219 (478)
....|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.|....... .....+.+..+
T Consensus 147 ---~~~~Y~asKaal~~ltk~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 216 (255)
T d1gega_ 147 ---ELAVYSSSKFAVRGLTQTAARD-L---APLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRIT--- 216 (255)
T ss_dssp ---TBHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCT---
T ss_pred ---ccccchhCHHHHHhhHHHHHHH-h---hhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCC---
Confidence 1267999999999988766432 2 2478999999999985542111111 11111222221
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
..-+...+|+|+++..++.. ...-..|+.+.+.+|--+
T Consensus 217 ------l~R~~~peevA~~v~fL~S~---------~a~~itG~~i~vDGG~~~ 254 (255)
T d1gega_ 217 ------LGRLSEPEDVAACVSYLASP---------DSDYMTGQSLLIDGGMVF 254 (255)
T ss_dssp ------TCSCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESSSSSC
T ss_pred ------CCCCcCHHHHHHHHHHHhCc---------hhCCccCcEEEecCCEEe
Confidence 22356689999999887752 123467999999877543
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=3.4e-17 Score=152.15 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=155.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC-HHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS-KIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d-~~~l~~~l~~~D~ViHlAa 87 (478)
+++|++|||||++-||++++++|.++|++ |++.+|+.. .....+.+++.+|+++ .+.+.+.+.++|++||+||
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~-V~~~~r~~~-----~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG 75 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEE-----LLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAG 75 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHH-----HHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHH-----HHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEeccc
Confidence 67899999999999999999999999999 999998643 2334456788999986 3456666678999999999
Q ss_pred CCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchH
Q 011770 88 YGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYG 159 (478)
Q Consensus 88 ~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~ 159 (478)
...... +..+++..+++|+.++.++.+++.+ .+-.++|++||.....+.. ....|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~----------------~~~~Y~ 139 (234)
T d1o5ia_ 76 GPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIE----------------NLYTSN 139 (234)
T ss_dssp CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------------TBHHHH
T ss_pred ccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccccccc----------------ccccch
Confidence 653322 3456778889999999888887754 4556899999976521111 125799
Q ss_pred hhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH-HHHHHHHHcCCCCeeeCCCCccccceeHHHHHHH
Q 011770 160 RSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL-PRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLA 238 (478)
Q Consensus 160 ~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~-~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a 238 (478)
.+|...+.+.+..+.+ + +.+|+++.++.|+.+-.+...... ....+.+.+..+. ..+...+|+|++
T Consensus 140 asKaal~~ltk~lA~e-l---a~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~pl---------~R~~~pediA~~ 206 (234)
T d1o5ia_ 140 SARMALTGFLKTLSFE-V---APYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPM---------RRMAKPEEIASV 206 (234)
T ss_dssp HHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTT---------SSCBCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-h---cccCeEEeecccCccchhhhhhhcCHHHHHHHHhcCCC---------CCCcCHHHHHHH
Confidence 9999999888765432 1 247899999999999776432211 1222333333322 235568899999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 239 LILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 239 ~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+..++.. ...-..|+++.|.+|-
T Consensus 207 v~fL~S~---------~s~~itG~~i~vDGG~ 229 (234)
T d1o5ia_ 207 VAFLCSE---------KASYLTGQTIVVDGGL 229 (234)
T ss_dssp HHHHHSG---------GGTTCCSCEEEESTTC
T ss_pred HHHHhCh---------hhcCCcCcEEEECccc
Confidence 9877642 1224679999997763
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=5.5e-17 Score=151.76 Aligned_cols=225 Identities=17% Similarity=0.240 Sum_probs=162.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc---CcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR---GVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~---~~D~ViH 84 (478)
++++|++|||||++-||+++++.|+++|++ |++.+|++.. ........+++...+|+.+.+.++...+ ++|++||
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~-Vi~~~r~~~~-l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn 80 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAK-VIATDINESK-LQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFN 80 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHH-HGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHH-HHHHHhccCCceeeeeccccccccccccccccceeEEe
Confidence 478999999999999999999999999998 9999987542 2233445678899999998877776554 7899999
Q ss_pred cccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 85 VASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 85 lAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
+|+...... +.++++..+++|+.++..+.+++.+. +-.++|++||..... .+.. ...
T Consensus 81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~-----------~~~~----~~~ 145 (245)
T d2ag5a1 81 VAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV-----------KGVV----NRC 145 (245)
T ss_dssp CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT-----------BCCT----TBH
T ss_pred cccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc-----------CCcc----chh
Confidence 999754432 33467888999999999998887653 455899999864310 0111 126
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC------CcHHHHHHHHHcCCCCeeeCCCCccccce
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE------RHLPRIVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~------~~~~~~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
.|+.+|...|.+++..+.+ + +.+|+++.++.|+.|-.|... .......+.+....+. ..+.
T Consensus 146 ~Y~~sKaal~~l~r~lA~e-~---~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---------~R~~ 212 (245)
T d2ag5a1 146 VYSTTKAAVIGLTKSVAAD-F---IQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKT---------GRFA 212 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTT---------SSCE
T ss_pred HHHHHHHHHHHHHHHHHHH-h---hhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCC---------CCCc
Confidence 7999999999998776532 2 257999999999999776421 1112233333333222 2366
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+|+++++..++.. ......|+.+.|.+|..
T Consensus 213 ~pedva~~v~fL~s~---------~s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 213 TAEEIAMLCVYLASD---------ESAYVTGNPVIIDGGWS 244 (245)
T ss_dssp EHHHHHHHHHHHHSG---------GGTTCCSCEEEECTTGG
T ss_pred CHHHHHHHHHHHhCh---------hhCCCcCceEEeCCCcC
Confidence 788999999988752 12346899999987753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.8e-17 Score=156.02 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=153.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
++|++|||||++-||.++++.|+++|++ |++.+|+...... ......++.++++|++|+++++++++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999 9999987542111 01123468899999999999888775
Q ss_pred -CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc----C---CCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF----G---IQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~----~---v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|++||+|+.... .+++..+++|+.++.++..++.+. + -.++|++||.....+.
T Consensus 81 G~iDilVnnAg~~~~----~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~------------- 143 (254)
T d2gdza1 81 GRLDILVNNAGVNNE----KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV------------- 143 (254)
T ss_dssp SCCCEEEECCCCCCS----SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-------------
T ss_pred CCcCeeccccccccc----ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCC-------------
Confidence 68999999997533 346778999999998888887653 1 1369999998763221
Q ss_pred CCCccCCchHhhHHHHHHHHHHH-cCCCCccCCCCcceEEEEeCCceeCCCCCC------------cHHHHHHHHHcCCC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKS-NGRPFKKNNRKCLYTCAVRPAAIYGPGEER------------HLPRIVSLAKLGLV 216 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~-~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------------~~~~~i~~~~~g~~ 216 (478)
|. ..+|+.||...+.+.+.. ...++ ..+|+++.++.|+.|-.|.... ....+...+..
T Consensus 144 ~~---~~~Y~asKaal~~ltrs~ala~e~---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~--- 214 (254)
T d2gdza1 144 AQ---QPVYCASKHGIVGFTRSAALAANL---MNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKY--- 214 (254)
T ss_dssp TT---CHHHHHHHHHHHHHHHHHHHHHHH---HTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHH---
T ss_pred CC---ccchHHHHHHHHHHHHHHHHHHHh---cCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCC---
Confidence 11 257999999999887531 11111 1478999999999985442110 01111111111
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCCHHH
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFE 276 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s~~e 276 (478)
.-+...+|+|++++.++. .+...|++..|.+|..+.++|
T Consensus 215 ----------~r~~~pedvA~~v~fL~s-----------~~~itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 215 ----------YGILDPPLIANGLITLIE-----------DDALNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp ----------HCCBCHHHHHHHHHHHHH-----------CTTCSSCEEEEETTTEEEECC
T ss_pred ----------CCCcCHHHHHHHHHHHHc-----------CCCCCCCEEEECCCCeeeccc
Confidence 123456899999998886 224789999999888765543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=2.3e-17 Score=155.46 Aligned_cols=226 Identities=14% Similarity=0.051 Sum_probs=154.8
Q ss_pred CCCCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
.++++|++|||||+| -||++++++|+++|++ |++.+|++..... .........++++|++|+++++++++
T Consensus 4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (256)
T d1ulua_ 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE 82 (256)
T ss_dssp ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHH
Confidence 357899999999998 6999999999999999 9988876432111 11223457789999999999888765
Q ss_pred ---CcCEEEEcccCCCCc--------hhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCC
Q 011770 78 ---GVDCVFHVASYGMSG--------KEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~--------~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
++|++||+|+..... ....++...+++|+.++..+.+++...- -.++|++||.....+.+
T Consensus 83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~------- 155 (256)
T d1ulua_ 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVP------- 155 (256)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCT-------
T ss_pred hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCC-------
Confidence 589999999864321 1223456688999999999998876541 14799999987632111
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCC
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~ 222 (478)
. ...|+.||...+.+.+..+.+ + +.+|+++.++.|+.|..+..... .....+.+.+..+..
T Consensus 156 ------~---~~~Y~asKaal~~ltr~lA~e-l---a~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~---- 218 (256)
T d1ulua_ 156 ------K---YNVMAIAKAALEASVRYLAYE-L---GPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLR---- 218 (256)
T ss_dssp ------T---CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCC----------CHHHHHHHHHHSTTS----
T ss_pred ------C---chHHHHHHHHHHHHHHHHHHH-h---cccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCC----
Confidence 1 267999999999998766532 2 24789999999999987654331 133444444333322
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
-+...+|+|+++..++.. ...-..|+++.|.+|..
T Consensus 219 -----R~~~pedvA~~v~fL~S~---------~s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 219 -----RNITQEEVGNLGLFLLSP---------LASGITGEVVYVDAGYH 253 (256)
T ss_dssp -----SCCCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTGG
T ss_pred -----CCcCHHHHHHHHHHHhCc---------hhCCccCCeEEECcCEe
Confidence 244578999999887752 12246899999987754
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.7e-17 Score=159.66 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=157.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---------cccCCCeEEEEecCCCHHHHHHHhc-
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---------LLINHGVHCIQGDVVSKIDVEKAAR- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---------~~~~~~v~~v~gDl~d~~~l~~~l~- 77 (478)
.+++|+++||||++-||.+++++|+++|++ |++.+|+....... .....++.++++|++|+++++++++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~-Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 478999999999999999999999999999 99999875421100 0123468889999999999888765
Q ss_pred ------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCC
Q 011770 78 ------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 ------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
++|++||+|+...... +..+++..+++|+.|+..+.+++.+. +-.++|.+||... .+ .
T Consensus 88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~-~~-~------ 159 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTK-AG-F------ 159 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCT-TC-C------
T ss_pred HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccccc-cc-c------
Confidence 6899999998643322 34567889999999999999887653 3446787766432 11 0
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH----HHHHHHHHcCCCCee
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL----PRIVSLAKLGLVPFK 219 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~----~~~i~~~~~g~~~~~ 219 (478)
|. ..+|+.||...+.+.+..+.+ + +.+|+++.++.|+.|..+...... +...+......+.
T Consensus 160 ------~~---~~~Y~asKaal~~ltk~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~pl-- 224 (297)
T d1yxma1 160 ------PL---AVHSGAARAGVYNLTKSLALE-W---ACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPA-- 224 (297)
T ss_dssp ------TT---CHHHHHHHHHHHHHHHHHHHH-T---GGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTT--
T ss_pred ------cc---cccchhHHHHHHHHHHHHHHH-h---cccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCC--
Confidence 11 267999999999998776532 2 247899999999999876422111 1111111111111
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.-+...+|+|++++.++.. ...-..|+++.|.+|..+
T Consensus 225 -------gR~g~pedvA~~v~fL~Sd---------~s~~iTG~~i~VDGG~sl 261 (297)
T d1yxma1 225 -------KRIGVPEEVSSVVCFLLSP---------AASFITGQSVDVDGGRSL 261 (297)
T ss_dssp -------SSCBCTHHHHHHHHHHHSG---------GGTTCCSCEEEESTTGGG
T ss_pred -------CCCcCHHHHHHHHHHHhCc---------hhcCcCCcEEEeCcChhh
Confidence 2345678999999888752 123468999999887644
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.72 E-value=9.6e-18 Score=157.71 Aligned_cols=230 Identities=16% Similarity=0.197 Sum_probs=156.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-ccccCCCeEEEEecCCCHHHHHHHhc-------C
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-HLLINHGVHCIQGDVVSKIDVEKAAR-------G 78 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-~~~~~~~v~~v~gDl~d~~~l~~~l~-------~ 78 (478)
.++++|+++||||++-||.++++.|+++|++ |++.+|+...... .........++++|++|.++++++++ +
T Consensus 2 nrL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 3578999999999999999999999999999 9999986542111 11224567889999999998887765 5
Q ss_pred cCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCCCC
Q 011770 79 VDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI 151 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~ 151 (478)
+|++||+|+...... +.++++..+++|+.++.++.+++.+. +-.++|++||.....+. |
T Consensus 81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~-------------~- 146 (253)
T d1hxha_ 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPI-------------E- 146 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCC-------------T-
T ss_pred CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCc-------------c-
Confidence 799999999654322 34567889999999999988887753 22589999998763211 1
Q ss_pred CccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHH-HHHHHHcCCCCeeeCCCCccccce
Q 011770 152 DEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPR-IVSLAKLGLVPFKIGEPSVKTDWI 230 (478)
Q Consensus 152 ~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~-~i~~~~~g~~~~~~g~g~~~~~~v 230 (478)
...+|+.||...+.+.+....+ +.+ ..+++++..+-|+.|..|.....++. ..+........ ....-.+.
T Consensus 147 --~~~~Y~asKaal~~lt~~lA~e-~~~-~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~-----~~~~gr~~ 217 (253)
T d1hxha_ 147 --QYAGYSASKAAVSALTRAAALS-CRK-QGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPK-----LNRAGRAY 217 (253)
T ss_dssp --TBHHHHHHHHHHHHHHHHHHHH-HHH-HTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTT-----TBTTCCEE
T ss_pred --ccccccchhHHHHHHHHHHHHH-Hhh-cCCCEEEEEEeECCCcCHhHHhhCcchhhHHHHHhCcc-----ccccCCCC
Confidence 1257999999999888755421 110 02469999999999965421000000 00011111100 01112466
Q ss_pred eHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 231 YVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 231 ~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
..+|+|++++.++.. ...-..|+.++|.+|
T Consensus 218 ~pedvA~~v~fL~S~---------~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 218 MPERIAQLVLFLASD---------ESSVMSGSELHADNS 247 (253)
T ss_dssp CHHHHHHHHHHHHSG---------GGTTCCSCEEEESSS
T ss_pred CHHHHHHHHHHHhCh---------hhCCCcCcEEEECcc
Confidence 789999999887742 122468999998765
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=1.3e-16 Score=153.52 Aligned_cols=251 Identities=17% Similarity=0.140 Sum_probs=167.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc----------cccCCCeEEEEecCCCHHHHHHHh
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH----------LLINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~----------~~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
+++++|+++||||++-||++++++|+++|++ |++.|+........ ...........+|++|.++.++.+
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~-Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 81 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLV 81 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHH
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHH
Confidence 4578999999999999999999999999999 99998865421000 000122345678998877666554
Q ss_pred c-------CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccC
Q 011770 77 R-------GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVN 141 (478)
Q Consensus 77 ~-------~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~ 141 (478)
+ ++|++||+||...... +..+++..+++|+.|+.++.+++.+ .+-.++|++||.+..++...
T Consensus 82 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~~--- 158 (302)
T d1gz6a_ 82 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFG--- 158 (302)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT---
T ss_pred HHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCCC---
Confidence 3 6899999999754332 3446788999999999999888764 35569999999886443211
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeC
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g 221 (478)
...|+.||...+.+.+....+ + ..+|+++.++.|+.+--+.+.. ++.
T Consensus 159 -------------~~~Y~asKaal~~lt~~la~E-~---~~~gIrVN~I~PG~~~t~~~~~-~~~--------------- 205 (302)
T d1gz6a_ 159 -------------QANYSAAKLGLLGLANTLVIE-G---RKNNIHCNTIAPNAGSRMTETV-MPE--------------- 205 (302)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHH-T---GGGTEEEEEEEEECCSTTTGGG-SCH---------------
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHH-H---hccCCceeeeCCCCCCcchhhc-CcH---------------
Confidence 267999999999998766532 2 2579999999998763322111 111
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC-------------------CCCCHHHHHHHHH
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG-------------------FPINTFEFIGPLL 282 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g-------------------~~~s~~e~~~~i~ 282 (478)
....+...+|+|.+++.++.. .....|+++.+.+| .+.+..++.+...
T Consensus 206 ---~~~~~~~PedvA~~v~fL~S~----------~a~itG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~~t~e~i~~~~~ 272 (302)
T d1gz6a_ 206 ---DLVEALKPEYVAPLVLWLCHE----------SCEENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPEAVRDNWV 272 (302)
T ss_dssp ---HHHHHSCGGGTHHHHHHHTST----------TCCCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCHHHHHHTHH
T ss_pred ---hhHhcCCHHHHHHHHHHHcCC----------CcCCCCcEEEeCCCceeEEEEeecCcccccCCCCCCCHHHHHHHHH
Confidence 111223357999998877641 11356777766544 3457777777777
Q ss_pred HhcCCCCCcccCChHHHHHHHHHHHHH
Q 011770 283 KTLDYDLPKSWLAVPHALFLGKVFSFF 309 (478)
Q Consensus 283 ~~lg~~~~~~~lp~~~~~~~a~~~~~~ 309 (478)
+....+.. ..|.......+.+.+.+
T Consensus 273 ~i~d~~~~--~~p~~~~~~~~~~~~~~ 297 (302)
T d1gz6a_ 273 KICDFSNA--SKPKSIQESTGGIIEVL 297 (302)
T ss_dssp HHTCCTTC--BCCCCHHHHHHHHHHHH
T ss_pred HHhCcccC--cCCCCHHHHHHHHHHHH
Confidence 76665432 23444444444444443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.71 E-value=4.1e-17 Score=154.43 Aligned_cols=227 Identities=11% Similarity=0.127 Sum_probs=151.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--c-----ccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--L-----LINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~-----~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
++++|.++||||++-||++++++|+++|++ |++.+|+....... . ....++.++++|++|+++++++++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence 478899999999999999999999999999 99999875421110 0 112358899999999999888775
Q ss_pred ----CcCEEEEcccCCCCc--------hhhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCC
Q 011770 78 ----GVDCVFHVASYGMSG--------KEMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~--------~~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|++||+||..... .+.++++..+++|+.|+.++.+++.+. +-.++|.++|......+.
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~----- 155 (264)
T d1spxa_ 81 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHAT----- 155 (264)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCC-----
T ss_pred HHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccC-----
Confidence 689999999864221 133467788999999999998887753 224667666654311110
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC---------cHHHHHHHHHc
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER---------HLPRIVSLAKL 213 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~---------~~~~~i~~~~~ 213 (478)
|. ...|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.+.... ........+..
T Consensus 156 -------~~---~~~Y~asKaal~~lt~~lA~e-l---~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (264)
T d1spxa_ 156 -------PD---FPYYSIAKAAIDQYTRNTAID-L---IQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKE 221 (264)
T ss_dssp -------TT---SHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBCCCC--------------HHHHHHHHH
T ss_pred -------CC---chhhhhhhhhHHHHHHHHHHH-h---cccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHh
Confidence 11 256999999999988765432 2 2478999999999997653221 11111222222
Q ss_pred CCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 214 GLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 214 g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
..+. .-+...+|+|++++.++.... ..-..|+++.|.+|..
T Consensus 222 ~~Pl---------~R~g~pedvA~~v~fL~S~~~--------s~~itG~~i~vDGG~s 262 (264)
T d1spxa_ 222 CVPA---------GVMGQPQDIAEVIAFLADRKT--------SSYIIGHQLVVDGGSS 262 (264)
T ss_dssp HCTT---------SSCBCHHHHHHHHHHHHCHHH--------HTTCCSCEEEESTTGG
T ss_pred cCCC---------CCCcCHHHHHHHHHHHhCCcc--------cCCccCceEEeCCChh
Confidence 2222 124457899999987763100 1136799999987753
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.70 E-value=4.7e-17 Score=154.99 Aligned_cols=223 Identities=20% Similarity=0.166 Sum_probs=152.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++|+++||||++-||++++++|.++|++ |++.+|+....... .....++..+.+|++|.++++++++ ++
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAK-VAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKI 80 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCc
Confidence 467899999999999999999999999998 99999875421111 1123568899999999998887764 68
Q ss_pred CEEEEcccCCCCch---------hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 80 DCVFHVASYGMSGK---------EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 80 D~ViHlAa~~~~~~---------~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
|++||+|+...... ...+++..+++|+.|+.++.+++.+ .+ .++|++||.....+.+
T Consensus 81 dilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~~--------- 150 (276)
T d1bdba_ 81 DTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYPNG--------- 150 (276)
T ss_dssp CEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSTTS---------
T ss_pred ccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccCCC---------
Confidence 99999999643221 1123678899999999988887754 34 5899998876532211
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc----------HHHHHHHHHcCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH----------LPRIVSLAKLGLV 216 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~----------~~~~i~~~~~g~~ 216 (478)
. ...|+.||...+.+.+..+.+ + .+++++..+.|+.|-.+-.... -..+.+.+....+
T Consensus 151 ----~---~~~Y~asKaal~~ltr~lA~e-l----a~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 218 (276)
T d1bdba_ 151 ----G---GPLYTAAKHAIVGLVRELAFE-L----APYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLP 218 (276)
T ss_dssp ----S---CHHHHHHHHHHHHHHHHHHHH-H----TTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCT
T ss_pred ----C---CchHHHHHHHHHHHHHHHHHH-h----hcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCC
Confidence 1 257999999999988766532 2 1349999999999865532110 1112233333333
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
.-. +...+|+|++++.++.... ..-..|+.++|.+|-
T Consensus 219 lgR---------~g~peeva~~v~fL~S~~~--------a~~itG~~i~VDGG~ 255 (276)
T d1bdba_ 219 IGR---------MPEVEEYTGAYVFFATRGD--------AAPATGALLNYDGGL 255 (276)
T ss_dssp TSS---------CCCGGGGSHHHHHHHCHHH--------HTTCSSCEEEESSSG
T ss_pred CCC---------CcCHHHHHHHHHHHcCCcc--------cCCeeCcEEEECcCh
Confidence 322 3346799998876552100 124679999998774
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.70 E-value=1.8e-16 Score=149.53 Aligned_cols=225 Identities=19% Similarity=0.140 Sum_probs=157.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
++.+|++|||||++-||.+++++|+++|++ |++.+++....... .....++..+++|++|++++++.++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999 98877765432111 1123468899999999999888775
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
++|++||+|+...... +..+++..+++|+.+..++++++.++- -.+++.++|......+.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~------------ 149 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI------------ 149 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC------------
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCC------------
Confidence 6899999999754332 344667889999999999999998752 23566666543311110
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC-------------CCCcHHHHHHHHHcCCC
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG-------------EERHLPRIVSLAKLGLV 216 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~-------------~~~~~~~~i~~~~~g~~ 216 (478)
|. ...|+.||...+.+++....+ + +..|+++.++.|+.+-.+. .......+.+.+.+..+
T Consensus 150 ~~---~~~Y~asK~al~~l~r~lA~e-~---~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (259)
T d1ja9a_ 150 PN---HALYAGSKAAVEGFCRAFAVD-C---GAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNP 222 (259)
T ss_dssp CS---CHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTST
T ss_pred CC---chhHHHHHHHHHHHHHHHHHH-H---hhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCC
Confidence 11 257999999999888766432 1 2478999999999985431 11122334444444433
Q ss_pred CeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 217 PFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 217 ~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
. .-+...+|++++++.++.. ......|+...+.+|.
T Consensus 223 l---------~R~g~p~eVa~~v~fL~S~---------~a~~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 223 L---------KRIGYPADIGRAVSALCQE---------ESEWINGQVIKLTGGG 258 (259)
T ss_dssp T---------SSCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTC
T ss_pred C---------CCCcCHHHHHHHHHHHhCc---------hhcCCcCceEEeCCCC
Confidence 2 2355688999999988762 1224688888887764
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.70 E-value=2.1e-16 Score=148.43 Aligned_cols=213 Identities=16% Similarity=0.135 Sum_probs=151.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCC-CHHHHHHHhc----
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVV-SKIDVEKAAR---- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~-d~~~l~~~l~---- 77 (478)
++++|+||||||++-||..++++|+++|++ |++++|+....... .....++.++.+|++ +.++++++++
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~-vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLK-NFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCS-EEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999 99998876543111 112346889999998 6556666553
Q ss_pred ---CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHc-------CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEF-------GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~-------~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+||.. .....+..+++|+.|+.++.+++.+. ...++|++||...+.+..
T Consensus 81 ~~g~iDilvnnAG~~----~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~---------- 146 (254)
T d1sbya1 81 QLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH---------- 146 (254)
T ss_dssp HHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT----------
T ss_pred HcCCCCEEEeCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCC----------
Confidence 689999999964 33467889999999999999988763 124799999987632211
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC---C---cHHHHHHHHHcCCCCeeeC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE---R---HLPRIVSLAKLGLVPFKIG 221 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~---~---~~~~~i~~~~~g~~~~~~g 221 (478)
....|+.||.....+.+....+ +. ..|+++..+.|+.|..|-.+ . ..+.+.+..
T Consensus 147 ------~~~~Y~asKaal~~~t~~la~e-l~---~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~---------- 206 (254)
T d1sbya1 147 ------QVPVYSASKAAVVSFTNSLAKL-AP---ITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELL---------- 206 (254)
T ss_dssp ------TSHHHHHHHHHHHHHHHHHHHH-HH---HHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHH----------
T ss_pred ------CCHHHHHHHHHHHHHHHHHHhh-cc---ccCeEEEEEEeCCCcCccccccccchhHHHHHHhcc----------
Confidence 1257999999999888766531 21 47899999999999875100 0 000111100
Q ss_pred CCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 222 EPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 222 ~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
..+...-.+++|++++.+++. ...|+++.+.+|.
T Consensus 207 ---~~~~~~~~e~va~~~~~~~~~------------~~tG~vi~vdgG~ 240 (254)
T d1sbya1 207 ---LSHPTQTSEQCGQNFVKAIEA------------NKNGAIWKLDLGT 240 (254)
T ss_dssp ---TTSCCEEHHHHHHHHHHHHHH------------CCTTCEEEEETTE
T ss_pred ---ccCCCCCHHHHHHHHHHhhhC------------CCCCCEEEECCCE
Confidence 112234688999999988873 2478899888774
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.69 E-value=3.9e-17 Score=155.37 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=154.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--ccc-----cCCCeEEEEecCCCHHHHHHHhc---
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HLL-----INHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~~-----~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
++++|+++||||++-||++++++|+++|++ |++.+|+...... ... ...++..+.+|++|+++++++++
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999 9999987542111 001 12358899999999998888765
Q ss_pred ----CcCEEEEcccCCCCch------hhhchhhhhHhhhHHHHHHHHHHHHc----CCCeEEEEeccceeeCCccccCCC
Q 011770 78 ----GVDCVFHVASYGMSGK------EMLQFGRVDEVNINGTCHVIEACLEF----GIQRLVYVSTYNVVFGGKEIVNGN 143 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~------~~~~~~~~~~vNv~gt~nll~aa~~~----~v~r~V~~SS~~v~~g~~~~~~~~ 143 (478)
++|++||+||...... +.++++..+++|+.++..+.+++.+. +-.+++++||.+...+.
T Consensus 80 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~------- 152 (274)
T d1xhla_ 80 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAH------- 152 (274)
T ss_dssp HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCC-------
T ss_pred HHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccC-------
Confidence 5899999998542221 22457788999999999998887653 44567777776542111
Q ss_pred CCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHHHHHHcCCCC
Q 011770 144 ESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIVSLAKLGLVP 217 (478)
Q Consensus 144 E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i~~~~~g~~~ 217 (478)
| ....|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.|.... .-.............
T Consensus 153 ------~---~~~~Y~asKaal~~ltk~lA~e-l---a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (274)
T d1xhla_ 153 ------S---GYPYYACAKAALDQYTRCTAID-L---IQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKEC 219 (274)
T ss_dssp ------T---TSHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT
T ss_pred ------C---CCceehhhhhHHHHHHHHHHHH-H---hHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcC
Confidence 1 0257999999999988765432 1 2478999999999997652110 011111222111110
Q ss_pred eeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 218 FKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 218 ~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
. ...-+...+|+|++++.++.... ..-..|+++.|.+|..
T Consensus 220 i------PlgR~g~pediA~~v~fL~S~d~--------s~~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 220 I------PVGHCGKPEEIANIIVFLADRNL--------SSYIIGQSIVADGGST 259 (274)
T ss_dssp C------TTSSCBCHHHHHHHHHHHHCHHH--------HTTCCSCEEEESTTGG
T ss_pred C------CCCCCcCHHHHHHHHHHHcCCcc--------ccCccCcEEEeCcCHH
Confidence 0 11234568899999987763100 1236899999988754
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.4e-16 Score=150.07 Aligned_cols=209 Identities=13% Similarity=0.095 Sum_probs=143.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c-c---ccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H-L---LINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~-~---~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
|.++++|++|||||++-||.++++.|.++|++ |++.+|+...... . . .....+.++++|++|+++++++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~-Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHH
Confidence 45588999999999999999999999999998 9999987542111 0 1 112357889999999999888765
Q ss_pred -----CcCEEEEcccCCCCc----hhhhchhhhhHhhhHHHHHHHHHHHH----cC--CCeEEEEeccceeeCCccccCC
Q 011770 78 -----GVDCVFHVASYGMSG----KEMLQFGRVDEVNINGTCHVIEACLE----FG--IQRLVYVSTYNVVFGGKEIVNG 142 (478)
Q Consensus 78 -----~~D~ViHlAa~~~~~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~--v~r~V~~SS~~v~~g~~~~~~~ 142 (478)
++|++||+|+..... .+..+++..+++|+.++.++.+++.+ .+ -.++|++||.+...+.
T Consensus 84 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------ 157 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------ 157 (257)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC------
T ss_pred HHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC------
Confidence 689999999965432 23456788899999999988777643 33 3589999998752111
Q ss_pred CCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCC----CcHHHHHHHHHcCCCCe
Q 011770 143 NESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEE----RHLPRIVSLAKLGLVPF 218 (478)
Q Consensus 143 ~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~----~~~~~~i~~~~~g~~~~ 218 (478)
|.. ....|+.+|...+.+.+....+ +.. ..+++++.++-|+.+=.+... ..........
T Consensus 158 ----p~~----~~~~Y~~sKaal~~ltr~la~e-l~~-~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~------- 220 (257)
T d1xg5a_ 158 ----PLS----VTHFYSATKYAVTALTEGLRQE-LRE-AQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY------- 220 (257)
T ss_dssp ----SCG----GGHHHHHHHHHHHHHHHHHHHH-HHH-TTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH-------
T ss_pred ----CCc----ccHHHHHHHHHHHhCHHHHHHH-HHh-CCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC-------
Confidence 110 1246999999999998755421 100 157899999999877443210 1111111111
Q ss_pred eeCCCCccccceeHHHHHHHHHHHHh
Q 011770 219 KIGEPSVKTDWIYVDNLVLALILASM 244 (478)
Q Consensus 219 ~~g~g~~~~~~v~V~Dva~a~~~a~~ 244 (478)
....+...+|+|++++.++.
T Consensus 221 ------~~~r~~~pedvA~~v~fL~s 240 (257)
T d1xg5a_ 221 ------EQMKCLKPEDVAEAVIYVLS 240 (257)
T ss_dssp ------C---CBCHHHHHHHHHHHHH
T ss_pred ------CCCCCcCHHHHHHHHHHHhC
Confidence 11235668999999988876
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=8.8e-17 Score=150.04 Aligned_cols=201 Identities=15% Similarity=0.097 Sum_probs=144.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+++.+|+++||||++-||++++++|.++|++ |++.+|+...... ......++..+.+|++|.++++++++
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999999 9999997542111 11223568899999999999887765
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++|++||+|+...... +..+.+..+++|+.|+.++.+++.+ .+-.++|++||.....+.+.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~--------- 152 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF--------- 152 (244)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHH---------
T ss_pred cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCC---------
Confidence 5899999999654332 3345678899999999998887664 45568999999887432111
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
...|+.||++.+.+.+....+ +.+....|+++.++.|+.|--+...... ....
T Consensus 153 -------~~~Y~asKaal~~~~~~La~E-l~~~~~~gI~V~~i~PG~v~T~~~~~~~-------------------~~~~ 205 (244)
T d1yb1a_ 153 -------LLAYCSSKFAAVGFHKTLTDE-LAALQITGVKTTCLCPNFVNTGFIKNPS-------------------TSLG 205 (244)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHH-HHHTTCTTEEEEEEEETHHHHCSTTCTH-------------------HHHC
T ss_pred -------cHHHHHHHHHHHHHHHHHHHH-HHhhcCCCEEEEEEEcCCCCChhhhCcC-------------------cccc
Confidence 257999999998888765421 1110136899999999988544222110 0111
Q ss_pred cceeHHHHHHHHHHHHh
Q 011770 228 DWIYVDNLVLALILASM 244 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~ 244 (478)
..+..+|+|+.++.++.
T Consensus 206 ~~~~pe~va~~i~~~~~ 222 (244)
T d1yb1a_ 206 PTLEPEEVVNRLMHGIL 222 (244)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 23457899999988876
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.68 E-value=1.1e-16 Score=152.23 Aligned_cols=230 Identities=12% Similarity=0.108 Sum_probs=152.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--ccc-----cCCCeEEEEecCCCHHHHHHHhc---
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--HLL-----INHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~~~-----~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
++++|+++||||++-||+++++.|.++|++ |++.+|+...... ... ....+.++++|++|+++++++++
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999998 9999987542111 011 12358899999999999888775
Q ss_pred ----CcCEEEEcccCCCCch--------hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEecc-ceeeCCccccC
Q 011770 78 ----GVDCVFHVASYGMSGK--------EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTY-NVVFGGKEIVN 141 (478)
Q Consensus 78 ----~~D~ViHlAa~~~~~~--------~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~-~v~~g~~~~~~ 141 (478)
++|++||+||...... ...+++..+++|+.++.++.+++.+. +-.++|.++|. +...+.
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~----- 155 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQ----- 155 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCC-----
T ss_pred HHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCC-----
Confidence 6899999999653321 12246778899999999999887653 22356666554 321111
Q ss_pred CCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC------cHHHHHHHHHcCC
Q 011770 142 GNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER------HLPRIVSLAKLGL 215 (478)
Q Consensus 142 ~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~------~~~~~i~~~~~g~ 215 (478)
|. ...|+.||...+.+.+..+.+ + +.+|+++..+.|+.|-.+.... .............
T Consensus 156 --------~~---~~~Y~asKaal~~ltk~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 220 (272)
T d1xkqa_ 156 --------PD---FLYYAIAKAALDQYTRSTAID-L---AKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHK 220 (272)
T ss_dssp --------CS---SHHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred --------CC---cchhhhHHHHHHHHHHHHHHH-h---cccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHh
Confidence 11 257999999999988765432 1 2578999999999996552110 0111111111111
Q ss_pred CCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 216 VPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 216 ~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.. ....-+...+|+|++++.++.... ..-..|+++.|.+|..+
T Consensus 221 ~~------~PlgR~g~pediA~~v~fL~S~~a--------s~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 221 EC------IPIGAAGKPEHIANIILFLADRNL--------SFYILGQSIVADGGTSL 263 (272)
T ss_dssp TT------CTTSSCBCHHHHHHHHHHHHCHHH--------HTTCCSCEEEESTTGGG
T ss_pred cC------CCCCCCcCHHHHHHHHHHHhCcch--------hCCccCeEEEeCcCHHH
Confidence 11 011235568899999987763100 11367999999887654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.67 E-value=9.2e-16 Score=145.66 Aligned_cols=226 Identities=18% Similarity=0.130 Sum_probs=157.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
.++++|++|||||++-||.+++++|+++|++ |++.+++....... ......+.++++|++|++++.+.++
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999 99998875532111 1223568889999999999888765
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPY 148 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~ 148 (478)
++|++||+|+...... ...+....+++|+.++.++.+++.+.= -.+.+.++|.....+..
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~----------- 161 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAV----------- 161 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSC-----------
T ss_pred HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccccc-----------
Confidence 6799999999654332 334567788999999999999998752 24777887764311100
Q ss_pred CCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCC------------CCcHHHHHH-HHHcCC
Q 011770 149 FPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE------------ERHLPRIVS-LAKLGL 215 (478)
Q Consensus 149 ~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~------------~~~~~~~i~-~~~~g~ 215 (478)
+ ....|+.+|+..+.+++....+ + +.+|+++..+.|+.|-.+.. ...-....+ ......
T Consensus 162 -~---~~~~Y~asKaal~~ltk~lA~e-~---~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (272)
T d1g0oa_ 162 -P---KHAVYSGSKGAIETFARCMAID-M---ADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWS 233 (272)
T ss_dssp -S---SCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSC
T ss_pred -c---chhhHHHHHHHHHHHHHHHHHH-h---chhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccC
Confidence 1 1256999999999998765432 1 14789999999999964410 001111111 111222
Q ss_pred CCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 216 VPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 216 ~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+. .-+...+|+|.++..++.. ...-..|++..|.+|.
T Consensus 234 Pl---------gR~~~peevA~~v~fL~s~---------~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 234 PL---------RRVGLPIDIARVVCFLASN---------DGGWVTGKVIGIDGGA 270 (272)
T ss_dssp TT---------CSCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTC
T ss_pred CC---------CCCcCHHHHHHHHHHHhCc---------hhcCccCceEeECCCC
Confidence 11 2356789999999988752 1224688999888775
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.66 E-value=9.3e-17 Score=150.87 Aligned_cols=218 Identities=14% Similarity=0.087 Sum_probs=151.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-------CcCEEEEc
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-------GVDCVFHV 85 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-------~~D~ViHl 85 (478)
+++||||++.||..++++|.++|++ |++.+|+...... .......+.++|++|.++++++++ ++|++||+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~-V~i~~r~~~~~~~--~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnN 78 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHT-VACHDESFKQKDE--LEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSN 78 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHH--HHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH--HHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 7899999999999999999999998 9999987553211 111122345678887766655543 68999999
Q ss_pred ccCCCC-c----hhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCC
Q 011770 86 ASYGMS-G----KEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVD 156 (478)
Q Consensus 86 Aa~~~~-~----~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~ 156 (478)
|+.... . .+.++++..+++|+.++.++.+++.+ .+-.++|++||.+...+. |. ..
T Consensus 79 Ag~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~-------------~~---~~ 142 (252)
T d1zmta1 79 DIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW-------------KE---LS 142 (252)
T ss_dssp CCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC-------------TT---CH
T ss_pred CcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccccc-------------cc---cc
Confidence 986432 1 13345778889999999988887654 355699999998753211 11 25
Q ss_pred chHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--------HHHHHHHHHcCCCCeeeCCCCcccc
Q 011770 157 SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--------LPRIVSLAKLGLVPFKIGEPSVKTD 228 (478)
Q Consensus 157 ~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--------~~~~i~~~~~g~~~~~~g~g~~~~~ 228 (478)
+|+.||...+.+.+....+ + +.+|+++.++.|+.|-.+..... .+.....+.+..+.- -
T Consensus 143 ~Y~asKaal~~lt~~lA~e-l---a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~---------R 209 (252)
T d1zmta1 143 TYTSARAGACTLANALSKE-L---GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQ---------R 209 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H---GGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSS---------S
T ss_pred ccccccccHHHHHHHHHHH-h---cccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCC---------C
Confidence 7999999999998766432 2 25789999999999987654322 123334444333222 2
Q ss_pred ceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 229 WIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 229 ~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
+...+|+|++++.++.. ...-..|+++.|.+|-.
T Consensus 210 ~g~pedvA~~v~fL~S~---------~s~~iTG~~i~vdGG~~ 243 (252)
T d1zmta1 210 LGTQKELGELVAFLASG---------SCDYLTGQVFWLAGGFP 243 (252)
T ss_dssp CBCHHHHHHHHHHHHTT---------SCGGGTTCEEEESTTCC
T ss_pred CcCHHHHHHHHHHHhCc---------hhcCCcCCeEEECCCce
Confidence 45688999999888752 12346799999988753
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.8e-15 Score=141.56 Aligned_cols=219 Identities=18% Similarity=0.177 Sum_probs=149.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-cccCCCeEEEEecCCCHHHHHHHhc-------Cc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-LLINHGVHCIQGDVVSKIDVEKAAR-------GV 79 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-~~~~~~v~~v~gDl~d~~~l~~~l~-------~~ 79 (478)
++++|+++||||++-||.+++++|.++|++ |++.+|+....... ............|+.+.+++++... ..
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRV 80 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 578999999999999999999999999998 99999887643221 1223567888999999877665443 56
Q ss_pred CEEEEcccCCCCch----------hhhchhhhhHhhhHHHHHHHHHHHHc----------CCCeEEEEeccceeeCCccc
Q 011770 80 DCVFHVASYGMSGK----------EMLQFGRVDEVNINGTCHVIEACLEF----------GIQRLVYVSTYNVVFGGKEI 139 (478)
Q Consensus 80 D~ViHlAa~~~~~~----------~~~~~~~~~~vNv~gt~nll~aa~~~----------~v~r~V~~SS~~v~~g~~~~ 139 (478)
|.+++.++....+. ..++.+..+++|+.++.++.+++.+. +-.++|++||.....+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~-- 158 (248)
T d2o23a1 81 DVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV-- 158 (248)
T ss_dssp CEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT--
T ss_pred cccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCCC--
Confidence 88888876432211 22356778899999999999998764 223799999987632211
Q ss_pred cCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCee
Q 011770 140 VNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFK 219 (478)
Q Consensus 140 ~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~ 219 (478)
....|+.||...+.+.+....+ + +.+|+++.++.|+.+..+..........+...+..++
T Consensus 159 --------------~~~~Y~asKaal~~lt~~la~e-~---~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl-- 218 (248)
T d2o23a1 159 --------------GQAAYSASKGGIVGMTLPIARD-L---APIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPF-- 218 (248)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCCC----------CHHHHTCSS--
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHH-h---cccCcceeeeccCceecchhhcCCHHHHHHHHhcCCC--
Confidence 1257999999999999876542 2 2578999999999997765443323333333332221
Q ss_pred eCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEe
Q 011770 220 IGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFV 266 (478)
Q Consensus 220 ~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni 266 (478)
. .-+...+|+|+++..+++ .+-..|++.+|
T Consensus 219 ~------~R~g~peevA~~v~fL~s-----------~~~itGq~I~v 248 (248)
T d2o23a1 219 P------SRLGDPAEYAHLVQAIIE-----------NPFLNGEVIRL 248 (248)
T ss_dssp S------CSCBCHHHHHHHHHHHHH-----------CTTCCSCEEEE
T ss_pred C------CCCcCHHHHHHHHHHHHh-----------CCCCCceEeEC
Confidence 1 124568899999988776 22456776654
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=1.1e-15 Score=143.11 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=123.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHH---cCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 11 GKTFLVTGGLGHVGSALCLELVR---RGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~---~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
||+||||||++-||.+++++|++ +|++ |++.+|+....... .....++.++++|++|+++++++++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQH-LFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK 80 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSE-EEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence 68999999999999999999974 6888 99999987643211 1234679999999999988776543
Q ss_pred --CcCEEEEcccCCCCch-----hhhchhhhhHhhhHHHHHHHHHHHHc---------------CCCeEEEEeccceeeC
Q 011770 78 --GVDCVFHVASYGMSGK-----EMLQFGRVDEVNINGTCHVIEACLEF---------------GIQRLVYVSTYNVVFG 135 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~-----~~~~~~~~~~vNv~gt~nll~aa~~~---------------~v~r~V~~SS~~v~~g 135 (478)
++|++||+|+...... +..+.+..+++|+.|+..+.+++... +-.++|.+||.....+
T Consensus 81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~ 160 (248)
T d1snya_ 81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ 160 (248)
T ss_dssp GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence 4799999999643321 22345678899999999998877532 3458999999753211
Q ss_pred CccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 136 GKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 136 ~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
+. + .| ....|+.||.....+.+....+ + ...|+++..+.|+.|--+
T Consensus 161 ~~---------~-~~---~~~~Y~aSKaal~~lt~~la~e-~---~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 161 GN---------T-DG---GMYAYRTSKSALNAATKSLSVD-L---YPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp TC---------C-SC---CCHHHHHHHHHHHHHHHHHHHH-H---GGGTCEEEEECCCSBCST
T ss_pred CC---------C-CC---ChHHHHHHHHHHHHHHHHHHHH-h---CCCCeEEEEcCCCcccCC
Confidence 11 0 11 1257999999999888665421 1 247899999999998654
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.65 E-value=1.2e-15 Score=141.98 Aligned_cols=195 Identities=17% Similarity=0.189 Sum_probs=140.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc------eEEEEecCCCCccc--c--cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY------QVRAFDLRTNSPWS--H--LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~------~V~~l~r~~~~~~~--~--~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
+.||||||++-||++++++|.++|++ .|+..+|+...... . ......+.++++|++|+++++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 34899999999999999999999985 26777776432111 0 1123457889999999999887765
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
++|++||+|+...... +.++++..+++|+.|+..+.+++.+ .+-.++|++||.+...+.
T Consensus 82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~---------- 151 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF---------- 151 (240)
T ss_dssp HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCC----------
Confidence 5899999999754332 3456788999999999998888765 345689999998763221
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCcc
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVK 226 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~ 226 (478)
|. ..+|+.||...+.+.+....+ + +.+|+++..+.|+.|-.|..... +.+..
T Consensus 152 ---~~---~~~Y~asK~al~~lt~~la~e-l---~~~gIrvn~i~PG~v~T~~~~~~------------------~~~~~ 203 (240)
T d2bd0a1 152 ---RH---SSIYCMSKFGQRGLVETMRLY-A---RKCNVRITDVQPGAVYTPMWGKV------------------DDEMQ 203 (240)
T ss_dssp ---TT---CHHHHHHHHHHHHHHHHHHHH-H---TTTTEEEEEEEECCBCSTTTCCC------------------CSTTG
T ss_pred ---CC---ChHHHHHHHHHHHHHHHHHHH-h---CcCCeEEEEeeeCcccCchhhhc------------------CHhhH
Confidence 11 267999999999888765431 2 25799999999999976632210 01122
Q ss_pred ccceeHHHHHHHHHHHHh
Q 011770 227 TDWIYVDNLVLALILASM 244 (478)
Q Consensus 227 ~~~v~V~Dva~a~~~a~~ 244 (478)
..+...+|+|++++.++.
T Consensus 204 ~~~~~PedvA~~v~~l~s 221 (240)
T d2bd0a1 204 ALMMMPEDIAAPVVQAYL 221 (240)
T ss_dssp GGSBCHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHc
Confidence 234567999999998876
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.65 E-value=5.4e-16 Score=146.17 Aligned_cols=198 Identities=20% Similarity=0.202 Sum_probs=142.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc--c-----cccCCCeEEEEecCCCHHHHHHHhc-----
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS--H-----LLINHGVHCIQGDVVSKIDVEKAAR----- 77 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~--~-----~~~~~~v~~v~gDl~d~~~l~~~l~----- 77 (478)
+..++|||||+|.||.+++++|.++|+.+|+++.|+...... . ......+.++.+|++|.++++++++
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~ 87 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 87 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence 346999999999999999999999999647777776322110 0 1123458899999999999998876
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCCccccCCCCCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPID 152 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~ 152 (478)
++|.|||+|+...... ...+....+++|+.|+.++.+++...+..++|++||.....+...
T Consensus 88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~~~-------------- 153 (259)
T d2fr1a1 88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPG-------------- 153 (259)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTT--------------
T ss_pred ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCCcc--------------
Confidence 3689999999654332 223456678899999999999998888889999999987544322
Q ss_pred ccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeH
Q 011770 153 EHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYV 232 (478)
Q Consensus 153 ~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V 232 (478)
...|+.+|...|.+..+.. ..|++++++.|+.+.+++.... .....+. ..-...+..
T Consensus 154 --~~~YaAaka~l~~la~~~~--------~~Gi~v~~I~pg~~~~~g~~~~--~~~~~~~-----------~~G~~~~~~ 210 (259)
T d2fr1a1 154 --LGGYAPGNAYLDGLAQQRR--------SDGLPATAVAWGTWAGSGMAEG--PVADRFR-----------RHGVIEMPP 210 (259)
T ss_dssp --CTTTHHHHHHHHHHHHHHH--------HTTCCCEEEEECCBC--------------CT-----------TTTEECBCH
T ss_pred --cHHHHHHHHhHHHHHHHHH--------hCCCCEEECCCCcccCCccccc--hHHHHHH-----------hcCCCCCCH
Confidence 2569999999999987765 4689999999999987753210 0111100 011245678
Q ss_pred HHHHHHHHHHHh
Q 011770 233 DNLVLALILASM 244 (478)
Q Consensus 233 ~Dva~a~~~a~~ 244 (478)
+++++++..++.
T Consensus 211 ~~~~~~l~~~l~ 222 (259)
T d2fr1a1 211 ETACRALQNALD 222 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988887
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.64 E-value=1.7e-15 Score=145.49 Aligned_cols=226 Identities=15% Similarity=0.086 Sum_probs=153.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc----
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR---- 77 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~---- 77 (478)
.++++|+++||||+|.||++++++|+++|++ |++.+|+....... ......+..+++|++|.++++++++
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~-Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 3678899999999999999999999999999 99999876421110 1123567889999999999877664
Q ss_pred ---CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc-----CCCeEEEEeccceeeCCccccCCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF-----GIQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~-----~v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
++|++||+|+...... ...+....+.+|..+...+...+... +...++.+||.....+.
T Consensus 100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~--------- 170 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS--------- 170 (294)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC---------
T ss_pred hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcc---------
Confidence 6899999999754432 22345667788888887776654422 33456666665432111
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc---HHHHHHHHHcCCCCeeeCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIGE 222 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~---~~~~i~~~~~g~~~~~~g~ 222 (478)
|. ..+|+.+|...+.+++..+.+ + +.+|+++.++.|+.|-.+..... ............+.-
T Consensus 171 ----~~---~~~YsasKaal~~ltk~lA~e-l---a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~---- 235 (294)
T d1w6ua_ 171 ----GF---VVPSASAKAGVEAMSKSLAAE-W---GKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCG---- 235 (294)
T ss_dssp ----TT---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTS----
T ss_pred ----cc---cchHHHHHHHHHHHHHHHHHH-H---hHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCC----
Confidence 11 256999999999999766432 1 24789999999999977643211 112233333333221
Q ss_pred CCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 223 PSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 223 g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
-+...+|+|+++..++.. ...-..|++..+.+|..
T Consensus 236 -----R~~~pediA~~v~fL~sd---------~s~~itG~~i~vDGG~~ 270 (294)
T d1w6ua_ 236 -----RLGTVEELANLAAFLCSD---------YASWINGAVIKFDGGEE 270 (294)
T ss_dssp -----SCBCHHHHHHHHHHHTSG---------GGTTCCSCEEEESTTHH
T ss_pred -----CCCCHHHHHHHHHHHhCc---------hhcCCCCcEEEECCChh
Confidence 244579999999887752 12246899999988754
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=2.6e-15 Score=141.41 Aligned_cols=218 Identities=12% Similarity=0.033 Sum_probs=149.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHH---cCCceEEEEecCCCCcccc------cccCCCeEEEEecCCCHHHHHHHhc-
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVR---RGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVSKIDVEKAAR- 77 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~---~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d~~~l~~~l~- 77 (478)
++++|.++||||++-||.+++++|.+ +|++ |++.+|+....... .....++.++++|++|+++++++++
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~-Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSV-MLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCE-EEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCE-EEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 57889999999999999999999986 7998 99999875421110 0112357889999999998887753
Q ss_pred ----------CcCEEEEcccCCCCc-------hhhhchhhhhHhhhHHHHHHHHHHHHcC------CCeEEEEeccceee
Q 011770 78 ----------GVDCVFHVASYGMSG-------KEMLQFGRVDEVNINGTCHVIEACLEFG------IQRLVYVSTYNVVF 134 (478)
Q Consensus 78 ----------~~D~ViHlAa~~~~~-------~~~~~~~~~~~vNv~gt~nll~aa~~~~------v~r~V~~SS~~v~~ 134 (478)
..|++||.|+..... .+..+++..+++|+.|+.++.+++.+.= -.++|++||.....
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 357999999864211 1224567789999999999999998752 23799999987632
Q ss_pred CCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCC-----cHHHHHH
Q 011770 135 GGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEER-----HLPRIVS 209 (478)
Q Consensus 135 g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~-----~~~~~i~ 209 (478)
+. | ....|+.||...+.+.+....+ .+|+++.++.|+.|-.+.... ..+....
T Consensus 162 ~~-------------~---~~~~Y~asKaal~~lt~~la~e------~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~ 219 (259)
T d1oaaa_ 162 PY-------------K---GWGLYCAGKAARDMLYQVLAAE------EPSVRVLSYAPGPLDNDMQQLARETSKDPELRS 219 (259)
T ss_dssp CC-------------T---TCHHHHHHHHHHHHHHHHHHHH------CTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHH
T ss_pred CC-------------c---cchHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHH
Confidence 11 1 1267999999999999877642 478999999999997652110 0011111
Q ss_pred HHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEec
Q 011770 210 LAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVS 267 (478)
Q Consensus 210 ~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~ 267 (478)
.+....+ ...+...+|+|++++.++.. ..-..|+.+++-
T Consensus 220 ~~~~~~~---------~~r~~~p~evA~~i~~ll~~----------~s~~TG~~idv~ 258 (259)
T d1oaaa_ 220 KLQKLKS---------DGALVDCGTSAQKLLGLLQK----------DTFQSGAHVDFY 258 (259)
T ss_dssp HHHHHHH---------TTCSBCHHHHHHHHHHHHHH----------CCSCTTEEEETT
T ss_pred HHHhcCC---------CCCCCCHHHHHHHHHHHhhh----------ccCCCCCeEEec
Confidence 1111000 01234578999999887763 223567776653
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.61 E-value=8.7e-15 Score=137.04 Aligned_cols=218 Identities=15% Similarity=0.141 Sum_probs=141.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCCCccc-ccccCCCeEEEEecCCCHHHHHHHhc---------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTNSPWS-HLLINHGVHCIQGDVVSKIDVEKAAR--------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~~~~~-~~~~~~~v~~v~gDl~d~~~l~~~l~--------- 77 (478)
|.+|+||||||++-||.+++++|+++|+. .|++.+|+...... ......++.++++|++|.++++++++
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~ 80 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD 80 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCC
Confidence 34589999999999999999999999963 37777776543211 11234578999999999998877654
Q ss_pred CcCEEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHc---------------CCCeEEEEeccceeeCCc
Q 011770 78 GVDCVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEF---------------GIQRLVYVSTYNVVFGGK 137 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~---------------~v~r~V~~SS~~v~~g~~ 137 (478)
++|++||+||..... .+..+.+..+++|+.|+.++.+++... ...+++.+|+........
T Consensus 81 ~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~ 160 (250)
T d1yo6a1 81 GLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDN 160 (250)
T ss_dssp CCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTC
T ss_pred CeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccCC
Confidence 389999999964321 123356678999999999998887532 123677777765422111
Q ss_pred cccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCC
Q 011770 138 EIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVP 217 (478)
Q Consensus 138 ~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~ 217 (478)
. ...+..| ...|+.||+....+.+..+.+ ++ ..|+++.++.||.|--+-.. .
T Consensus 161 ~-----~~~~~~~----~~aY~aSKaal~~l~~~la~e-l~---~~gI~v~~i~PG~v~T~m~~-------------~-- 212 (250)
T d1yo6a1 161 T-----SGSAQFP----VLAYRMSKAAINMFGRTLAVD-LK---DDNVLVVNFCPGWVQTNLGG-------------K-- 212 (250)
T ss_dssp C-----STTSSSC----BHHHHHHHHHHHHHHHHHHHH-TG---GGTCEEEEEECCCC----------------------
T ss_pred c-----ccccchh----HHHHHHHHHHHHHHHHHHHHH-hc---ccCeEEEEEecCCCCCCCCC-------------C--
Confidence 0 1111122 256999999999988776542 22 47899999999988432100 0
Q ss_pred eeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCCC
Q 011770 218 FKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPIN 273 (478)
Q Consensus 218 ~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~s 273 (478)
...+..++.++.++..+..+ .+...|+ |+.-+++|..
T Consensus 213 ---------~~~~~~e~~a~~~~~~~~~~---------~~~~sG~-f~~~~g~p~~ 249 (250)
T d1yo6a1 213 ---------NAALTVEQSTAELISSFNKL---------DNSHNGR-FFMRNLKPYE 249 (250)
T ss_dssp ---------------HHHHHHHHHHHTTC---------CGGGTTC-EEETTEEECC
T ss_pred ---------CCCCCHHHHHHHHHHHHhcC---------CCCCCeE-EECCCCeeCC
Confidence 01234678888888877642 2234565 4445666643
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.8e-14 Score=133.60 Aligned_cols=206 Identities=18% Similarity=0.141 Sum_probs=141.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-------hc--CcC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-------AR--GVD 80 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-------l~--~~D 80 (478)
++|+||||||+|-||++++++|.++|++ |.++|+..... ......+..|..+.++.+.. +. ++|
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD 73 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENEE------ASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD 73 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCTT------SSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCcccc------ccccceeecccCcHHHHHHHHHHHHHHhCCCCce
Confidence 4789999999999999999999999999 99999876532 12233445566554443322 22 489
Q ss_pred EEEEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCccccCCCCCCCCCCCCc
Q 011770 81 CVFHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDE 153 (478)
Q Consensus 81 ~ViHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~ 153 (478)
++||+||..... ...++.+..+++|+.++.++.+++.++ +-.++|++||.+...+. |.
T Consensus 74 ~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~-------------~~-- 138 (236)
T d1dhra_ 74 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT-------------PG-- 138 (236)
T ss_dssp EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-------------TT--
T ss_pred EEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCc-------------cC--
Confidence 999999843211 123456778899999999999988864 22489999998753111 11
Q ss_pred cCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHH
Q 011770 154 HVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVD 233 (478)
Q Consensus 154 ~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~ 233 (478)
...|+.||...+.+.+....+ +.. ...|+++..+.|+.|..|. .+..... ...-.++..+
T Consensus 139 -~~~Y~asKaal~~lt~~la~E-l~~-~~~gI~vn~v~PG~v~T~~--------~~~~~~~---------~~~~~~~~pe 198 (236)
T d1dhra_ 139 -MIGYGMAKGAVHQLCQSLAGK-NSG-MPSGAAAIAVLPVTLDTPM--------NRKSMPE---------ADFSSWTPLE 198 (236)
T ss_dssp -BHHHHHHHHHHHHHHHHHTST-TSS-CCTTCEEEEEEESCEECHH--------HHHHSTT---------SCGGGSEEHH
T ss_pred -CcccHHHHHHHHHHHHHHHHH-hcc-CCCcEEEEEEEeccCcCCc--------chhhCcc---------chhhcCCCHH
Confidence 257999999999999887653 210 1368999999999997652 1111111 1223577889
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCceEEe
Q 011770 234 NLVLALILASMGLLDDIPGQKGRPIASGQPYFV 266 (478)
Q Consensus 234 Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni 266 (478)
|+++.+..++.. ......|+.+.+
T Consensus 199 ~va~~~~~l~s~---------~~~~i~G~~i~v 222 (236)
T d1dhra_ 199 FLVETFHDWITG---------NKRPNSGSLIQV 222 (236)
T ss_dssp HHHHHHHHHHTT---------TTCCCTTCEEEE
T ss_pred HHHHHHHHHhCC---------CccCCCCCeEEE
Confidence 999999988762 122356766665
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.56 E-value=4.5e-14 Score=130.97 Aligned_cols=212 Identities=21% Similarity=0.222 Sum_probs=147.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc------CcCEEEEc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR------GVDCVFHV 85 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~------~~D~ViHl 85 (478)
|++|||||++-||++++++|.++|++ |++.+|+... ......++|+++.....++.. +.+.+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYR-VVVLDLRREG--------EDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSA 72 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCCS--------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCccc--------ccceEeeccccchhhhHHHHHhhhccccccchhhh
Confidence 78999999999999999999999999 9999987652 345678899998877666553 34566666
Q ss_pred ccCCCC--------chhhhchhhhhHhhhHHHHHHHHHHHHc----------CCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 86 ASYGMS--------GKEMLQFGRVDEVNINGTCHVIEACLEF----------GIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 86 Aa~~~~--------~~~~~~~~~~~~vNv~gt~nll~aa~~~----------~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
++.... .......+..+++|+.+..++...+... +-.++|++||.....+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~--------- 143 (241)
T d1uaya_ 73 AGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIG--------- 143 (241)
T ss_dssp CCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTT---------
T ss_pred hhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCC---------
Confidence 553211 1122345677899999999888877653 2348999999876432111
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccc
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKT 227 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~ 227 (478)
...|+.||...+.+.+....+ + +.+|+++.++.|+.|-.+.................++ .+
T Consensus 144 -------~~~Y~asKaal~~lt~~lA~e-l---a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~--~~------ 204 (241)
T d1uaya_ 144 -------QAAYAASKGGVVALTLPAARE-L---AGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPF--PP------ 204 (241)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCS--SC------
T ss_pred -------chhhHHHHHHHHHHHHHHHHH-H---hhcCCceeeecCCcccccccchhhhhHHHHHHhcCCC--CC------
Confidence 267999999999998776532 2 2478999999999997664333223333333333222 11
Q ss_pred cceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 228 DWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 228 ~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
-+...+|+|+++..++. ..-..|++..|.+|-.
T Consensus 205 R~g~pedvA~~v~fL~s-----------~~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 205 RLGRPEEYAALVLHILE-----------NPMLNGEVVRLDGALR 237 (241)
T ss_dssp SCCCHHHHHHHHHHHHH-----------CTTCCSCEEEESTTCC
T ss_pred CCcCHHHHHHHHHHHHh-----------CCCCCCCEEEECCccc
Confidence 23457899999988876 2246899999987743
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=4.4e-14 Score=132.66 Aligned_cols=225 Identities=14% Similarity=0.106 Sum_probs=154.8
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|++|||||+| -||+++++.|+++|++ |++.+|++..... ..........+..|+.+..+..+.++
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 81 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence 6789999999999 7999999999999999 9999987543211 11223456788899999888777664
Q ss_pred -CcCEEEEcccCCCCchh---------hhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCC
Q 011770 78 -GVDCVFHVASYGMSGKE---------MLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNES 145 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~~---------~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~ 145 (478)
..|++||+|+....... ........++|+.+...+.+++...- -+.+|++||.....+.
T Consensus 82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~--------- 152 (258)
T d1qsga_ 82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI--------- 152 (258)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC---------
T ss_pred cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCC---------
Confidence 46999999987543321 11234566788888888888877642 2368888887652111
Q ss_pred CCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCc--HHHHHHHHHcCCCCeeeCCC
Q 011770 146 LPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH--LPRIVSLAKLGLVPFKIGEP 223 (478)
Q Consensus 146 ~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~--~~~~i~~~~~g~~~~~~g~g 223 (478)
|. ...|+.||...+.+++..+.+ + +.+|+++.+++|+.|..+..... ............+.
T Consensus 153 ----~~---~~~Y~~sKaal~~ltr~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl------ 215 (258)
T d1qsga_ 153 ----PN---YNVMGLAKASLEANVRYMANA-M---GPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPI------ 215 (258)
T ss_dssp ----TT---TTHHHHHHHHHHHHHHHHHHH-H---TTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT------
T ss_pred ----CC---cHHHHHHHHHHHHHHHHHHHH-h---CccCceeecccccccccccccccchhhhHHHHHHhCCCC------
Confidence 11 257999999999998766532 1 25799999999999987754331 22333333332222
Q ss_pred CccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 224 SVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 224 ~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
.-+...+|+++++..++.. ...-..|+++.+.+|..+
T Consensus 216 ---~R~~~peeia~~v~fL~s~---------~s~~itG~~i~vDGG~~i 252 (258)
T d1qsga_ 216 ---RRTVTIEDVGNSAAFLCSD---------LSAGISGEVVHVDGGFSI 252 (258)
T ss_dssp ---SSCCCHHHHHHHHHHHTSG---------GGTTCCSCEEEESTTGGG
T ss_pred ---CCCcCHHHHHHHHHHHhCc---------hhcCccCceEEECcCHHH
Confidence 1245688999999887742 123578999999888543
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.56 E-value=4.9e-14 Score=130.57 Aligned_cols=206 Identities=16% Similarity=0.116 Sum_probs=137.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHH-------Hh--cCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEK-------AA--RGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~-------~l--~~~D~V 82 (478)
.|||||||+|-||++++++|.++|++ |+++||+.... ......+.+|..+.+.... .+ .++|++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~-V~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l 75 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSANDQ------ADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV 75 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCCTT------SSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCchhc------ccccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence 57999999999999999999999999 99999976532 1223344566665444332 22 248999
Q ss_pred EEcccCCCCc-----hhhhchhhhhHhhhHHHHHHHHHHHHcC--CCeEEEEeccceeeCCccccCCCCCCCCCCCCccC
Q 011770 83 FHVASYGMSG-----KEMLQFGRVDEVNINGTCHVIEACLEFG--IQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHV 155 (478)
Q Consensus 83 iHlAa~~~~~-----~~~~~~~~~~~vNv~gt~nll~aa~~~~--v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~ 155 (478)
||+||..... ....+.+..+++|+.++.++.+++..+- -.++|++||.....+. |. .
T Consensus 76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~-------------~~---~ 139 (235)
T d1ooea_ 76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT-------------PS---M 139 (235)
T ss_dssp EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-------------TT---B
T ss_pred EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCc-------------cc---c
Confidence 9999953221 1223456778999999999999888752 2489999998753211 11 2
Q ss_pred CchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHH
Q 011770 156 DSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNL 235 (478)
Q Consensus 156 ~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dv 235 (478)
.+|+.||...+.+.+....+. +. ...++++..+.|+.+--+ +.+..... .....++..+|+
T Consensus 140 ~~Y~asKaal~~l~~~la~e~-~~-~~~~i~v~~i~Pg~~~T~--------~~~~~~~~---------~~~~~~~~~~~v 200 (235)
T d1ooea_ 140 IGYGMAKAAVHHLTSSLAAKD-SG-LPDNSAVLTIMPVTLDTP--------MNRKWMPN---------ADHSSWTPLSFI 200 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT-SS-CCTTCEEEEEEESCBCCH--------HHHHHSTT---------CCGGGCBCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh-cc-CCCceEEEEEecCcCcCc--------chhhhCcC---------CccccCCCHHHH
Confidence 679999999999998875432 10 135789999999988443 11222111 123457789999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCceEEec
Q 011770 236 VLALILASMGLLDDIPGQKGRPIASGQPYFVS 267 (478)
Q Consensus 236 a~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~ 267 (478)
++.++..+.... .....|....+.
T Consensus 201 a~~~~~~l~~~~--------~~~~tG~~i~v~ 224 (235)
T d1ooea_ 201 SEHLLKWTTETS--------SRPSSGALLKIT 224 (235)
T ss_dssp HHHHHHHHHCGG--------GCCCTTCEEEEE
T ss_pred HHHHHHHhcCcc--------ccCCCceEEEEE
Confidence 999875443211 123567777663
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.1e-14 Score=139.04 Aligned_cols=167 Identities=20% Similarity=0.156 Sum_probs=123.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc----------ccccCCCeEEEEecCCCHHHHHHHhc---
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS----------HLLINHGVHCIQGDVVSKIDVEKAAR--- 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~----------~~~~~~~v~~v~gDl~d~~~l~~~l~--- 77 (478)
+|.||||||++-||.++++.|.++|.+ |+.+++....... ......++..+.+|++|.+++.++++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~-v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 80 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQ-SFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTC-CEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCC-eEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcc
Confidence 456799999999999999999999988 7666543221100 01124568999999999999998875
Q ss_pred --CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCCCCCCC
Q 011770 78 --GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNGNESLP 147 (478)
Q Consensus 78 --~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~~E~~p 147 (478)
.+|++||+|+...... +.++.+..+++|+.|+.++.+++.. .+-.++|++||.....+.
T Consensus 81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~----------- 149 (285)
T d1jtva_ 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL----------- 149 (285)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----------
T ss_pred ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCC-----------
Confidence 4799999999754432 3346678899999999998887654 456799999998763221
Q ss_pred CCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 148 YFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 148 ~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
|. ..+|+.||...+.+.+....+ + ..+|+++.++.|+.|--+
T Consensus 150 --~~---~~~Y~asKaal~~l~~~la~E-l---~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 150 --PF---NDVYCASKFALEGLCESLAVL-L---LPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp --TT---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEECCBCC-
T ss_pred --CC---chHHHHHHHHHHHHHHHHHHH-h---hccCcEEEEEecCCCCCh
Confidence 11 257999999999888765432 2 147999999999999654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.7e-14 Score=133.43 Aligned_cols=200 Identities=19% Similarity=0.171 Sum_probs=139.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc-----cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH-----LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~-----~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|++|||||++-||.+++++|+++|++ |++.+|+....... ......+..+.+|+.+.+......+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~-Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999 99999875421110 1123457788999999877766543
Q ss_pred -CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc---CCCeEEEEeccceeeCCccccCCCCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF---GIQRLVYVSTYNVVFGGKEIVNGNESLPYF 149 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~---~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~ 149 (478)
..|++++.|+...... +.++....+++|+.|+.++.+++... +-.++|++||.+...+.
T Consensus 91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~------------- 157 (269)
T d1xu9a_ 91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAY------------- 157 (269)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCC-------------
T ss_pred CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCC-------------
Confidence 5799999998643322 33456678899999999888887642 22589999998763221
Q ss_pred CCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccc
Q 011770 150 PIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDW 229 (478)
Q Consensus 150 p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~ 229 (478)
|. ...|+.||+..+.+.+....+ +.. ...++++..+.||.|-.+ +......+. .....
T Consensus 158 p~---~~~Y~asKaal~~~~~~La~E-l~~-~~~~I~V~~v~PG~v~T~--------~~~~~~~~~---------~~~~~ 215 (269)
T d1xu9a_ 158 PM---VAAYSASKFALDGFFSSIRKE-YSV-SRVNVSITLCVLGLIDTE--------TAMKAVSGI---------VHMQA 215 (269)
T ss_dssp TT---CHHHHHHHHHHHHHHHHHHHH-HHH-HTCCCEEEEEEECCBCCH--------HHHHHSCGG---------GGGGC
T ss_pred CC---chHHHHHHHHHHHHHHHHHHH-hhh-cCCCEEEEEEecCcCCCc--------HHHHhccCC---------ccccC
Confidence 11 267999999999888765421 100 135789999999988432 112221111 12234
Q ss_pred eeHHHHHHHHHHHHh
Q 011770 230 IYVDNLVLALILASM 244 (478)
Q Consensus 230 v~V~Dva~a~~~a~~ 244 (478)
...+++++.++.+..
T Consensus 216 ~~~e~~a~~i~~~~~ 230 (269)
T d1xu9a_ 216 APKEECALEIIKGGA 230 (269)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh
Confidence 557899999888765
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.1e-14 Score=134.26 Aligned_cols=183 Identities=20% Similarity=0.128 Sum_probs=123.2
Q ss_pred CCeE-EEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCccc----ccccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 11 GKTF-LVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWS----HLLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 11 ~~~I-LVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~----~~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+|+| |||||++-||.+++++|+++ |++ |++.+|+...... ......++.++++|++|.++++++++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGD-VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSE-EEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 4555 89999999999999999986 888 9999987653211 01124568899999999999887664
Q ss_pred CcCEEEEcccCCCCch----hhhchhhhhHhhhHHHHHHHHHHHHc--CCCeEEEEeccceeeCCcccc-----------
Q 011770 78 GVDCVFHVASYGMSGK----EMLQFGRVDEVNINGTCHVIEACLEF--GIQRLVYVSTYNVVFGGKEIV----------- 140 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~----~~~~~~~~~~vNv~gt~nll~aa~~~--~v~r~V~~SS~~v~~g~~~~~----------- 140 (478)
++|++||.||...... ...+.+..+++|+.|+.++.+++... .-.|+|++||.....+.....
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~ 160 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSET 160 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcccc
Confidence 5899999999754332 22345678899999999999998764 124899999976532111000
Q ss_pred ------------------CCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCC
Q 011770 141 ------------------NGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGP 198 (478)
Q Consensus 141 ------------------~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp 198 (478)
......+..| ...|+.||.....+.+....+.-++....++.+..+.|+.|--+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 161 ITEEELVGLMNKFVEDTKKGVHQKEGWP----SSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTTTTCC----SCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred cchhhhccccccchhcccccccccCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 0000111112 35799999998876643221000000136899999999998554
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.45 E-value=6.4e-13 Score=126.21 Aligned_cols=223 Identities=12% Similarity=-0.022 Sum_probs=144.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCC-----------------CeEEEEecCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINH-----------------GVHCIQGDVV 67 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~-----------------~v~~v~gDl~ 67 (478)
+..++||||++-||++++++|.++|++ |++.++++...... ..... .+....+|++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~ 80 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT 80 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCC
Confidence 457899999999999999999999999 99888765421110 00111 2334556788
Q ss_pred CHHHHHHHhc-------CcCEEEEcccCCCCchhh----h--------------chhhhhHhhhHHHHHHHHHHHHc---
Q 011770 68 SKIDVEKAAR-------GVDCVFHVASYGMSGKEM----L--------------QFGRVDEVNINGTCHVIEACLEF--- 119 (478)
Q Consensus 68 d~~~l~~~l~-------~~D~ViHlAa~~~~~~~~----~--------------~~~~~~~vNv~gt~nll~aa~~~--- 119 (478)
+.++++++++ ++|++||+||........ . .....+.+|+.++..+.+++.+.
T Consensus 81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 8888887664 689999999965332110 0 11236788999999888876542
Q ss_pred -------CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeC
Q 011770 120 -------GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRP 192 (478)
Q Consensus 120 -------~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp 192 (478)
+..++|.+||.....+. | ...+|+.||...+.+.+....+ + +.+|+++.++.|
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~~~-------------~---~~~~Y~asKaal~~lt~~lA~e-l---~~~gIrvN~I~P 220 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQPL-------------L---GYTIYTMAKGALEGLTRSAALE-L---APLQIRVNGVGP 220 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTSCC-------------T---TCHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEE
T ss_pred hHHHhcCCCCcccccccccccCCc-------------c---ceeeeccccccchhhhHHHHHH-h---CCcccccccccc
Confidence 22357777776541110 0 1257999999999998776532 2 247999999999
Q ss_pred CceeCCCCCCcHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 193 AAIYGPGEERHLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 193 ~~vyGp~~~~~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
+.+-... ...+...+......++ . .-+...+|++++++.++.. ...-..|+++.+.+|..+
T Consensus 221 G~t~~~~--~~~~~~~~~~~~~~pl--~------~R~~~peeiA~~v~fL~S~---------~s~~itG~~i~VDGG~sl 281 (284)
T d1e7wa_ 221 GLSVLVD--DMPPAVWEGHRSKVPL--Y------QRDSSAAEVSDVVIFLCSS---------KAKYITGTCVKVDGGYSL 281 (284)
T ss_dssp SSBCCGG--GSCHHHHHHHHTTCTT--T------TSCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTGGG
T ss_pred ccccccc--cCCHHHHHHHHhcCCC--C------CCCCCHHHHHHHHHHHhCc---------hhcCccCCeEEECcChhc
Confidence 8643222 2233444544444322 1 1244688999999887752 123468999999888655
Q ss_pred C
Q 011770 273 N 273 (478)
Q Consensus 273 s 273 (478)
+
T Consensus 282 ~ 282 (284)
T d1e7wa_ 282 T 282 (284)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.43 E-value=1.1e-12 Score=123.94 Aligned_cols=224 Identities=13% Similarity=0.089 Sum_probs=140.2
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhc------
Q 011770 9 IEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAAR------ 77 (478)
Q Consensus 9 ~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~------ 77 (478)
+++|++|||||+| -||.+++++|+++|++ |++.+|++...... ........++..|+++.+++.++++
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 81 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence 6789999999988 7999999999999999 99999875422111 1123456788999999988777764
Q ss_pred -CcCEEEEcccCCCCchhh-----hchhhhh---HhhhHHHHHHHHHHHHc-CCCe-EEEEeccceeeCCccccCCCCCC
Q 011770 78 -GVDCVFHVASYGMSGKEM-----LQFGRVD---EVNINGTCHVIEACLEF-GIQR-LVYVSTYNVVFGGKEIVNGNESL 146 (478)
Q Consensus 78 -~~D~ViHlAa~~~~~~~~-----~~~~~~~---~vNv~gt~nll~aa~~~-~v~r-~V~~SS~~v~~g~~~~~~~~E~~ 146 (478)
.+|++||+|+........ ....... .++..+.........+. +-.. ++.+|+.+. ....
T Consensus 82 g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~-~~~~--------- 151 (274)
T d2pd4a1 82 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGS-TKYM--------- 151 (274)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGG-TSBC---------
T ss_pred CCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccc-cccc---------
Confidence 689999999965332211 1111122 22222333333333322 1223 444455443 1110
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcH--HHHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHL--PRIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~--~~~i~~~~~g~~~~~~g~g~ 224 (478)
.....|+.+|...+.+++....+ + +.+|+++.++.|+.+.-+...... ...........+.
T Consensus 152 ------~~~~~y~asK~al~~ltr~lA~e-~---~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------- 214 (274)
T d2pd4a1 152 ------AHYNVMGLAKAALESAVRYLAVD-L---GKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL------- 214 (274)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-------
T ss_pred ------ccchhhhHHHHHHHHHHHhhHHH-h---cCcCceecccccCcccCccccccCchHHHHHHHhhhhhc-------
Confidence 11267999999999988765321 1 257899999999999877543321 2222222222221
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFP 271 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~ 271 (478)
.-+...+|++.++..++... ..-..|+++.+.+|..
T Consensus 215 --~r~~~pedIA~~v~fL~S~~---------s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 215 --RKNVSLEEVGNAGMYLLSSL---------SSGVSGEVHFVDAGYH 250 (274)
T ss_dssp --SSCCCHHHHHHHHHHHHSGG---------GTTCCSCEEEESTTGG
T ss_pred --cCCcCHHHHHHHHHHHhChh---------hCCCcCceEEECCChh
Confidence 23456889999998877521 2246899999988864
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.43 E-value=3.1e-13 Score=127.37 Aligned_cols=226 Identities=11% Similarity=0.027 Sum_probs=142.2
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCcccc--cccCCCeEEEEecCCCHHHHHHHhc-------
Q 011770 9 IEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSPWSH--LLINHGVHCIQGDVVSKIDVEKAAR------- 77 (478)
Q Consensus 9 ~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--~~~~~~v~~v~gDl~d~~~l~~~l~------- 77 (478)
+++|++|||||+| .||.+++++|.++|++ |++.+|+....... .........+++|++++++++++++
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~-Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~ 82 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG 82 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCE-EEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCE-EEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence 6789999999765 5999999999999999 99998775432111 1233457788999999876655543
Q ss_pred ---CcCEEEEcccCCCCch---------hhhchhhhhHhhhHHHHHHHHHHHHcCC-CeEEEEeccceeeCCccccCCCC
Q 011770 78 ---GVDCVFHVASYGMSGK---------EMLQFGRVDEVNINGTCHVIEACLEFGI-QRLVYVSTYNVVFGGKEIVNGNE 144 (478)
Q Consensus 78 ---~~D~ViHlAa~~~~~~---------~~~~~~~~~~vNv~gt~nll~aa~~~~v-~r~V~~SS~~v~~g~~~~~~~~E 144 (478)
.+|+++|+|++..... +..+....+.+|+........+...... ...+.++|.... ..
T Consensus 83 ~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~-~~-------- 153 (268)
T d2h7ma1 83 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-RA-------- 153 (268)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-SC--------
T ss_pred cCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccccccccccc-cc--------
Confidence 3699999999653221 1123344556677776666666655432 234444443321 10
Q ss_pred CCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCC--------CCC----cHHHHHHHHH
Q 011770 145 SLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPG--------EER----HLPRIVSLAK 212 (478)
Q Consensus 145 ~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~--------~~~----~~~~~i~~~~ 212 (478)
.|. ...|+.+|...+.+++....+ + +.+|+++..+.|+.|-.+. ... ....+.+...
T Consensus 154 ----~p~---~~~y~~sK~a~~~ltr~lA~e-~---~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (268)
T d2h7ma1 154 ----MPA---YNWMTVAKSALESVNRFVARE-A---GKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWD 222 (268)
T ss_dssp ----CTT---THHHHHHHHHHHHHHHHHHHH-H---HTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred ----Ccc---cchhhccccchhhccccchhh-h---hccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHH
Confidence 111 267999999999998765431 1 2478999999999886541 111 1112222222
Q ss_pred cCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 213 LGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 213 ~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
...+. .+.+...+|+++++..++.. ......|+++.|.+|...
T Consensus 223 ~~~pl--------~rr~~~p~dva~~v~fL~Sd---------~a~~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 223 QRAPI--------GWNMKDATPVAKTVCALLSD---------WLPATTGDIIYADGGAHT 265 (268)
T ss_dssp HHCTT--------CCCTTCCHHHHHHHHHHHSS---------SCTTCCSEEEEESTTGGG
T ss_pred hcCCC--------CCCCCCHHHHHHHHHHHhCc---------hhcCccCCEEEECcCccc
Confidence 22221 12344578999999887742 123468999999887644
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.39 E-value=2.7e-12 Score=122.72 Aligned_cols=228 Identities=10% Similarity=0.013 Sum_probs=143.6
Q ss_pred CCCCCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEEecCCCCc------------ccccc---cCCCe-EEEEec--
Q 011770 6 NEGIEGKTFLVTGGLG--HVGSALCLELVRRGAYQVRAFDLRTNSP------------WSHLL---INHGV-HCIQGD-- 65 (478)
Q Consensus 6 ~~~~~~~~ILVTGatG--fIG~~Lv~~L~~~G~~~V~~l~r~~~~~------------~~~~~---~~~~v-~~v~gD-- 65 (478)
++++++|++|||||+| -||.+++++|+++|++ |++.+|++... ..... ..... .....|
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 3458899999999987 7999999999999999 99988753100 00000 00111 112222
Q ss_pred C---------------------CCHHH----HHHHhcCcCEEEEcccCCCC------chhhhchhhhhHhhhHHHHHHHH
Q 011770 66 V---------------------VSKID----VEKAARGVDCVFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIE 114 (478)
Q Consensus 66 l---------------------~d~~~----l~~~l~~~D~ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~ 114 (478)
+ .+.+. +.+.+.++|++||+||.... ..+..++...+++|+.++.++.+
T Consensus 82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~ 161 (297)
T d1d7oa_ 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence 1 11122 22223478999999986421 11334567888999999999999
Q ss_pred HHHHcCCC--eEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeC
Q 011770 115 ACLEFGIQ--RLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRP 192 (478)
Q Consensus 115 aa~~~~v~--r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp 192 (478)
++.....+ +.+.+|+.+...... + ....|+.+|...+.+++....+.. ..+|+++..+.|
T Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~~~------------~---~~~~y~~aKaa~~~l~~~~a~e~~---~~~gIrvN~I~P 223 (297)
T d1d7oa_ 162 HFLPIMNPGGASISLTYIASERIIP------------G---YGGGMSSAKAALESDTRVLAFEAG---RKQNIRVNTISA 223 (297)
T ss_dssp HHGGGEEEEEEEEEEECGGGTSCCT------------T---CTTTHHHHHHHHHHHHHHHHHHHH---HHHCCEEEEEEE
T ss_pred HHHHHhhcCCcceeeeehhhccccc------------c---cccceecccccccccccccchhcc---ccceEEeccccc
Confidence 88765322 455666554311110 0 125799999999888765432110 035899999999
Q ss_pred CceeCCCCCC--cHHHHHHHHHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCC
Q 011770 193 AAIYGPGEER--HLPRIVSLAKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGF 270 (478)
Q Consensus 193 ~~vyGp~~~~--~~~~~i~~~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~ 270 (478)
+.+..+.... ....+.+...+..+.- .+...+|++++++.++.. ...-..|+++.+.+|-
T Consensus 224 G~i~T~~~~~~~~~~~~~~~~~~~~Plg---------R~~~peevA~~v~fL~S~---------~a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 224 GPLGSRAAKAIGFIDTMIEYSYNNAPIQ---------KTLTADEVGNAAAFLVSP---------LASAITGATIYVDNGL 285 (297)
T ss_dssp CCCBCCCSSCCSHHHHHHHHHHHHSSSC---------CCBCHHHHHHHHHHHTSG---------GGTTCCSCEEEESTTG
T ss_pred ccccchhhhhccCCHHHHHHHHhCCCCC---------CCCCHHHHHHHHHHHhCc---------hhcCCcCceEEECcCH
Confidence 9998886554 2344555555443322 245688999999888742 1224689999998774
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.30 E-value=3.1e-11 Score=113.11 Aligned_cols=221 Identities=14% Similarity=0.053 Sum_probs=138.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc------cccCCCeEEEEecCCC----HHHHHHH------
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH------LLINHGVHCIQGDVVS----KIDVEKA------ 75 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~------~~~~~~v~~v~gDl~d----~~~l~~~------ 75 (478)
...|||||++-||.+++++|+++|++ |++.+|+....... ..........+.|+.+ .+.+.++
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~-Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFR-VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence 46899999999999999999999998 99999886532110 1123456667766654 2333332
Q ss_pred -hcCcCEEEEcccCCCCchh---------------hhchhhhhHhhhHHHHHHHHHHHHcC---------CCeEEEEecc
Q 011770 76 -ARGVDCVFHVASYGMSGKE---------------MLQFGRVDEVNINGTCHVIEACLEFG---------IQRLVYVSTY 130 (478)
Q Consensus 76 -l~~~D~ViHlAa~~~~~~~---------------~~~~~~~~~vNv~gt~nll~aa~~~~---------v~r~V~~SS~ 130 (478)
+.++|++||+||....... ..........|..+...........- ...++.+|+.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence 2368999999996533211 11223445566666665555554431 2245555554
Q ss_pred ceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHHHHHHH
Q 011770 131 NVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLPRIVSL 210 (478)
Q Consensus 131 ~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~~~i~~ 210 (478)
... . ..|. ...|+.||...+.+.+..+.+ + ..+|+++..+.|+.+.-+.... ......
T Consensus 161 ~~~-~------------~~~~---~~~Y~asKaal~~lt~~lA~e-~---~~~gIrVN~I~PG~i~t~~~~~--~~~~~~ 218 (266)
T d1mxha_ 161 MTD-L------------PLPG---FCVYTMAKHALGGLTRAAALE-L---APRHIRVNAVAPGLSLLPPAMP--QETQEE 218 (266)
T ss_dssp GGG-S------------CCTT---CHHHHHHHHHHHHHHHHHHHH-H---GGGTEEEEEEEESSBSCCSSSC--HHHHHH
T ss_pred ccc-c------------cCcc---hhhhhhhHHHHhhhHHHHHHH-h---CccCcEEEEeccCcEeccccCC--HHHHHH
Confidence 331 0 0111 267999999999998766432 1 2478999999999987664332 233344
Q ss_pred HHcCCCCeeeCCCCccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCCCCC
Q 011770 211 AKLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPI 272 (478)
Q Consensus 211 ~~~g~~~~~~g~g~~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g~~~ 272 (478)
+.+..+. | +-+...+|++++++.++.. ...-..|+++.+.+|-.+
T Consensus 219 ~~~~~pl---~-----r~~~~peeva~~v~fL~s~---------~s~~itG~~i~vDGG~~l 263 (266)
T d1mxha_ 219 YRRKVPL---G-----QSEASAAQIADAIAFLVSK---------DAGYITGTTLKVDGGLIL 263 (266)
T ss_dssp HHTTCTT---T-----SCCBCHHHHHHHHHHHHSG---------GGTTCCSCEEEESTTGGG
T ss_pred HHhcCCC---C-----CCCCCHHHHHHHHHHHhCc---------hhCCccCCeEEECccHhh
Confidence 4443321 1 2234688999999988852 122468999999877543
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.23 E-value=5.9e-11 Score=110.61 Aligned_cols=221 Identities=15% Similarity=0.116 Sum_probs=129.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh--------cCcCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA--------RGVDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l--------~~~D~V 82 (478)
||.|+||||++-||++++++|.++|++ |+++||+..+ ...|+.+.+...... ..+|++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~-V~~~~~~~~~-------------~~~d~~~~~~~~~~~~~~~~~~~~~id~l 66 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIRDAE-------------VIADLSTAEGRKQAIADVLAKCSKGMDGL 66 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSS-------------EECCTTSHHHHHHHHHHHHTTCTTCCSEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECChHH-------------HHHHhcCHHHHHHHHHHHHHHhCCCCcEE
Confidence 678999999999999999999999999 9999987542 246777766554432 247999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHH----cCCCeEEEEeccceeeCCccccCC------------CCCC
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLE----FGIQRLVYVSTYNVVFGGKEIVNG------------NESL 146 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~----~~v~r~V~~SS~~v~~g~~~~~~~------------~E~~ 146 (478)
+|+|+..... ........+|..+...+.+.... ........+++....+-.....+. .-..
T Consensus 67 v~~Ag~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~ 143 (257)
T d1fjha_ 67 VLCAGLGPQT---KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIV 143 (257)
T ss_dssp EECCCCCTTC---SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHH
T ss_pred EEcCCCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeeh
Confidence 9999864332 23345667888888777766543 334455555554321111000000 0000
Q ss_pred CCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeCCCCCCcHH--HHHHHHHcCCCCeeeCCCC
Q 011770 147 PYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERHLP--RIVSLAKLGLVPFKIGEPS 224 (478)
Q Consensus 147 p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyGp~~~~~~~--~~i~~~~~g~~~~~~g~g~ 224 (478)
..........+|+.||...+.+.+....+ + +.+|+++..+.|+.|-.|.....+. ...+...+.. .
T Consensus 144 ~~~~~~~~~~~Y~asKaal~~ltr~lA~e-l---~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~--------~ 211 (257)
T d1fjha_ 144 EHAGEQGGNLAYAGSKNALTVAVRKRAAA-W---GEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFV--------P 211 (257)
T ss_dssp HTCCTTHHHHHHHHHHHHHHHHHHHTHHH-H---HHTTCEEEEEEECC---------------------CC--------C
T ss_pred hccCCCcchHHHHHHhhhhhccccccccc-c---ccccccccccccCCcCChhHHhhcCCHHHHHHHHhcC--------C
Confidence 00000111246999999999999766431 1 1478999999999997664322111 1111111111 1
Q ss_pred ccccceeHHHHHHHHHHHHhcccCCCCCCCCCCCCCCceEEecCC
Q 011770 225 VKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIASGQPYFVSDG 269 (478)
Q Consensus 225 ~~~~~v~V~Dva~a~~~a~~~l~~~~~~~~~~~~~~g~~yni~~g 269 (478)
...-+...+|+++++..++.. ...-..|++..+.+|
T Consensus 212 PlgR~g~p~eva~~v~fL~S~---------~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 212 PMGRRAEPSEMASVIAFLMSP---------AASYVHGAQIVIDGG 247 (257)
T ss_dssp STTSCCCTHHHHHHHHHHTSG---------GGTTCCSCEEEESTT
T ss_pred CCCCCcCHHHHHHHHHHHhCc---------hhCCccCceEEeCCC
Confidence 112355678999999887752 122468999988766
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.21 E-value=1e-10 Score=113.26 Aligned_cols=168 Identities=6% Similarity=-0.004 Sum_probs=109.7
Q ss_pred CCeEEEEc--CCChhHHHHHHHHHHcCCceEEEEecCCCCcc-----------ccc-----ccCCCeEEEEe--------
Q 011770 11 GKTFLVTG--GLGHVGSALCLELVRRGAYQVRAFDLRTNSPW-----------SHL-----LINHGVHCIQG-------- 64 (478)
Q Consensus 11 ~~~ILVTG--atGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~-----------~~~-----~~~~~v~~v~g-------- 64 (478)
.|.+|||| ++.-||..+++.|.+.|.+ |++.++...... ... ..........+
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVK-IIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCE-EEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 57899999 4469999999999999999 988765432100 000 00111222333
Q ss_pred ------------cCCCHHHHHHH-------hcCcCEEEEcccCCCC------chhhhchhhhhHhhhHHHHHHHHHHHHc
Q 011770 65 ------------DVVSKIDVEKA-------ARGVDCVFHVASYGMS------GKEMLQFGRVDEVNINGTCHVIEACLEF 119 (478)
Q Consensus 65 ------------Dl~d~~~l~~~-------l~~~D~ViHlAa~~~~------~~~~~~~~~~~~vNv~gt~nll~aa~~~ 119 (478)
|+.+.++++++ +.++|++||.||.... ..+..++...+++|+.++..+.+++.++
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 44454333333 3478999999985432 1134567788899999999999988775
Q ss_pred --CCCeEEEEeccceeeCCccccCCCCCCCCCCCCccCCchHhhHHHHHHHHHHHcCCCCccCCCCcceEEEEeCCceeC
Q 011770 120 --GIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYG 197 (478)
Q Consensus 120 --~v~r~V~~SS~~v~~g~~~~~~~~E~~p~~p~~~~~~~Y~~sK~~aE~~v~~~~~~~~~~~~~~gl~~~ilRp~~vyG 197 (478)
.-.++|.+||.+...+ .| .+...|+.+|...|.+++....+ +.+ .+|+++..+.|+.|--
T Consensus 161 m~~~GsIv~iss~~~~~~-------------~p--~y~~~y~asKaal~~ltr~lA~E-la~--~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQKV-------------VP--GYGGGMSSAKAALESDTRVLAYH-LGR--NYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEEEECGGGTSC-------------CT--TCTTTHHHHHHHHHHHHHHHHHH-HHH--HHCCEEEEEEECCCCC
T ss_pred cccccccccceeehhccc-------------cc--ccchhhhhhhccccccchhhHHH-Hhc--ccCcEEEEEecCcccc
Confidence 1247899988765211 01 11256999999999999876531 110 2589999999997743
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.17 E-value=7.7e-12 Score=111.65 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=79.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc---ccccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS---HLLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~---~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
.++++|+|+||||+|.||+.+++.|.++|++ |++++|+...... ......++....+|++|.++++++++++|+||
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili 97 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF 97 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccc-hhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence 4678999999999999999999999999998 9999998653211 11122456778899999999999999999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHH
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCH 111 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~n 111 (478)
|+|+.+......++++...++|+.++.+
T Consensus 98 n~Ag~g~~~~~~e~~~~~~~~nv~~~~~ 125 (191)
T d1luaa1 98 TAGAIGLELLPQAAWQNESSIEIVADYN 125 (191)
T ss_dssp ECCCTTCCCBCHHHHHTCTTCCEEEECC
T ss_pred ecCccccccCCHHHHHhhhcceeehhHh
Confidence 9999755444444455555666555443
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.57 E-value=1.1e-07 Score=79.71 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=80.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccccccCCC-eEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHLLINHG-VHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~~~~~~-v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
||.|+||+|.+|++++..|..+|. ++++.+|..+.........+.. ......-+ ...+..+.++++|+||.+|+...
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~-~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYL-GPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEE-SGGGHHHHHTTCSEEEECCSCCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEE-cCCChHHHhCCCCEEEECCCcCC
Confidence 799999999999999999998886 5699999764321111111111 11122222 34556778899999999999633
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
. ...+..+..+.|+...+.+++.+.+++.+-+|.+-|
T Consensus 81 ~--~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 81 K--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp C--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred C--CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 2 223567788999999999999999998776666655
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.33 E-value=9.2e-07 Score=72.89 Aligned_cols=95 Identities=21% Similarity=0.309 Sum_probs=70.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcccCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVASYGM 90 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa~~~ 90 (478)
|+|+|.|+ |.+|+++++.|.+.|++ |+++|.++..- .......+...+.||.+|++.++++ ++++|.++-+..-
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~-v~vid~d~~~~-~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~-- 75 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHD-IVLIDIDKDIC-KKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK-- 75 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHH-HHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC--
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC-cceecCChhhh-hhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc--
Confidence 68999997 99999999999999999 99999875421 1111223688999999999999987 5789998876421
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
.+.|+..+ ..+++.+++++|-
T Consensus 76 -----------d~~N~~~~----~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 76 -----------EEVNLMSS----LLAKSYGINKTIA 96 (132)
T ss_dssp -----------HHHHHHHH----HHHHHTTCCCEEE
T ss_pred -----------HHHHHHHH----HHHHHcCCceEEE
Confidence 13565433 3566778877663
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=2.3e-06 Score=71.45 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=71.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc-C-CceEEEEecCCCCccc-ccccCCC-eEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR-G-AYQVRAFDLRTNSPWS-HLLINHG-VHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~-G-~~~V~~l~r~~~~~~~-~~~~~~~-v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|||.|+|++|.||++++-.|..+ + .+++..+|..+..... ....+.. ...... +...++ .+.++++|+||-+||
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~-~~~~~~-~~~~~~aDvvvitaG 78 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG-FSGEDA-TPALEGADVVLISAG 78 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEE-ECSSCC-HHHHTTCSEEEECCS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcE-EEcCCC-ccccCCCCEEEECCC
Confidence 58999999999999999887643 4 2349999875431100 0011111 111111 111122 236789999999999
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
... .+..+..+..+.|....+.+.+.+.+++.+.+|.+
T Consensus 79 ~~~--k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aiviv 116 (145)
T d2cmda1 79 VRR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGI 116 (145)
T ss_dssp CCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred ccC--CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 643 22335677889999999999999999986654443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.07 E-value=7e-06 Score=68.58 Aligned_cols=110 Identities=14% Similarity=0.196 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------c-cccCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------H-LLINHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~-~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
++|||.|.|+ |++|+.++..|..+|. ++|+++|+.+..... . ...........+|. + .++++|+
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~----~~~~adi 75 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S----DCKDADL 75 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G----GGTTCSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H----HhccccE
Confidence 3569999995 9999999999999873 349999986532100 0 11122344455553 2 4679999
Q ss_pred EEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 82 VFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 82 ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
||.+|+.... ...+..+....|+.-.+.+.+...+++.+-++.+-|
T Consensus 76 vvitag~~~~--~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 76 VVITAGAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp EEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEecccccC--CCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 9999985332 233456778899999999999999998776665544
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.96 E-value=2.8e-05 Score=64.63 Aligned_cols=108 Identities=12% Similarity=0.028 Sum_probs=73.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcc----c----c--cccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPW----S----H--LLINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~----~----~--~~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
|||.|+||+|.+|++++..|..+|. +++..+|+.+.... . + .....+++....--.|. +.++++|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~aD 76 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL----RIIDESD 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH----HHhccce
Confidence 5799999999999999999999884 34999998753110 0 0 01112233322211122 3677999
Q ss_pred EEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEE
Q 011770 81 CVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLV 125 (478)
Q Consensus 81 ~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V 125 (478)
+||-+||.... ...+..+..+.|..-.+.+.+...+++.+.++
T Consensus 77 vVVitAG~~~~--~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii 119 (145)
T d1hyea1 77 VVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119 (145)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred EEEEecccccC--CCCChhhhhhhhHHHHHHHHHHHhccCCCeEE
Confidence 99999986432 22345678899999999999999998865444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.91 E-value=3.4e-05 Score=64.48 Aligned_cols=109 Identities=22% Similarity=0.284 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------c--cccCCCeEEEEecCCCHHHHHHHhcCc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------H--LLINHGVHCIQGDVVSKIDVEKAARGV 79 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~--~~~~~~v~~v~gDl~d~~~l~~~l~~~ 79 (478)
..++||.|+|+ |.+|++++..|..+|. +++..+|+.+..... + ......+....+|. +.++++
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~da 75 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRDA 75 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTTC
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhccc
Confidence 45679999996 9999999999999875 359999976542100 0 01122344444442 357799
Q ss_pred CEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 80 DCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 80 D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
|+||.+|+.... ...+..+....|+.-.+.+.+...+++.+-++.+
T Consensus 76 Dvvvitag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~iv 121 (148)
T d1ldna1 76 DLVVICAGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLV 121 (148)
T ss_dssp SEEEECCSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred eeEEEecccccc--cCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 999999986432 2334567788999999999999999986654444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.88 E-value=2.2e-05 Score=64.31 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=57.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlAa 87 (478)
|+++|.|+ |-+|+++++.|.+.|++ |+++|.++... ......+...+.||.+|++.++++ ++++|.||=+.+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~-vvvid~d~~~~--~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHE-VLAVDINEEKV--NAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCC-CEEEESCHHHH--HHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCe-EEEecCcHHHH--HHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence 57889975 99999999999999999 99999865422 223445677889999999999887 678998886653
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.87 E-value=1.1e-05 Score=69.30 Aligned_cols=74 Identities=19% Similarity=0.068 Sum_probs=57.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.|+|+|.|| |++|+++++.|.++|++ |++++|+...................+..+.......+...|.++.+.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~-V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 75 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIK-VTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLI 75 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCE-EEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeec
Confidence 479999986 99999999999999998 999999876432222233445556677778888888888999988765
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.82 E-value=9.2e-06 Score=68.50 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--cc----CCCeE-EEEecCCCHHHHHHHhcCcCEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--LI----NHGVH-CIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--~~----~~~v~-~v~gDl~d~~~l~~~l~~~D~V 82 (478)
+++||.|+|+ |.+|+.++..|...+..+++++|.++....... .. ..+.. .+.++ ...+++++++|+|
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~adiV 80 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE----YSYEAALTGADCV 80 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE----CSHHHHHTTCSEE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc----CchhhhhcCCCeE
Confidence 4679999997 999999999888888755999997765211100 00 01111 11111 1235678899999
Q ss_pred EEcccCCCCch---hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 83 FHVASYGMSGK---EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 83 iHlAa~~~~~~---~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
+-+|+...... ...+..+....|+.-...+++.+.+++.+-++.+-|
T Consensus 81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99998643221 112456778899999999999999999776666544
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.79 E-value=1.3e-05 Score=66.64 Aligned_cols=106 Identities=11% Similarity=0.132 Sum_probs=69.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--cc-----CCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--LI-----NHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--~~-----~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+||.|+|+ |.+|++++-.|..++. +++..+|+.+....... .. ........+ | .+.++++|+|+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~----~~~~~~adivv 73 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---D----YSDVKDCDVIV 73 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC---c----HHHhCCCceEE
Confidence 57999996 9999999999999875 34999998765321110 11 112222222 2 23578999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
-+|+.... ...+..+..+.|+.-...+.+.+.+++.+-++.+
T Consensus 74 itag~~~~--~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~iv 115 (142)
T d1y6ja1 74 VTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 115 (142)
T ss_dssp ECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred EecccccC--cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEE
Confidence 99986432 2234567788999999999999999987654444
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.0002 Score=59.33 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=44.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC-C--ceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG-A--YQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G-~--~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|++|.|.||||++|+.+++.|++.. + .+++.+..+............. ....++.+.+ .++++|+||-+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~~~~~~~~----~~~~~DivF~a~~ 74 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQDAFDLE----ALKALDIIVTCQG 74 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBCEETTCHH----HHHTCSEEEECSC
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eeeecccchh----hhhcCcEEEEecC
Confidence 5689999999999999999887753 2 2367666554432111111111 1223344433 3568999999885
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.60 E-value=0.0002 Score=59.05 Aligned_cols=105 Identities=16% Similarity=0.071 Sum_probs=72.8
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCc--cc---cc----ccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSP--WS---HL----LINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~--~~---~~----~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
||.|+||+|.||++++..|..++. +++..+|+..... .. +. ......+...+| .+ .++++|+|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~---~~----~~~~aDiV 74 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---YE----DTAGSDVV 74 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---GG----GGTTCSEE
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC---HH----HhhhcCEE
Confidence 799999999999999999999876 3488888532211 00 00 112334444443 22 35799999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
|-+|+.... ...+..+..+.|..-.+.+.+...+++.+-++.
T Consensus 75 vitaG~~~~--~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~i 116 (142)
T d1o6za1 75 VITAGIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116 (142)
T ss_dssp EECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEE
T ss_pred EEecccccc--cCCchhhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 999985432 223567788999999999999999998655443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.56 E-value=8e-05 Score=62.26 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=51.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHH-HHhc---CcCEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE-KAAR---GVDCVF 83 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~-~~l~---~~D~Vi 83 (478)
+.+++||.|.||.|.+|+.+++.|.+.||+ |.+.|++...............+...++.....+. +... .=..|+
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~-V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iii 84 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYP-ISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLA 84 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEE
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCC-cEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEE
Confidence 356789999999999999999999999999 99999876543222222333333333333222222 2221 224777
Q ss_pred EcccC
Q 011770 84 HVASY 88 (478)
Q Consensus 84 HlAa~ 88 (478)
++++.
T Consensus 85 D~~Sv 89 (152)
T d2pv7a2 85 DLTSV 89 (152)
T ss_dssp ECCSC
T ss_pred Eeccc
Confidence 77753
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.53 E-value=0.00036 Score=57.52 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=73.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccccc--------ccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSHL--------LINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~~--------~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
|||.|+|+ |.+|++++..|...|. +++..+|+.+....... ......++... .|. +.++++|+|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~----~~~~dadvv 73 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY----ADTANSDIV 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG----GGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCH----HHhcCCeEE
Confidence 57999996 9999999999999874 34999998765321110 01122333322 222 357899999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
+-+||.... ...+..+..+.|..-...+.+.+.+++.+-++.+
T Consensus 74 vitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aiviv 116 (142)
T d1guza1 74 IITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116 (142)
T ss_dssp EECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred EEEEecCCC--CCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 999986322 2224567788999999999999999886655544
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.45 E-value=0.0005 Score=57.68 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=74.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------c--cccCCCeEEEEecCCCHHHHHHHhcC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------H--LLINHGVHCIQGDVVSKIDVEKAARG 78 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~--~~~~~~v~~v~gDl~d~~~l~~~l~~ 78 (478)
..+.+||.|+|+ |.+|+.++..|..+|. +++..+|+.+..... + ........... .|.+ .+++
T Consensus 17 ~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~---~d~~----~~~~ 88 (160)
T d1i0za1 17 TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD---KDYS----VTAN 88 (160)
T ss_dssp CCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEEC---SSGG----GGTT
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEec---cchh----hccc
Confidence 355679999995 9999999999999986 459999876442110 0 00111111112 2222 4679
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
+|+||.+|+.... ...+..+..+.|+.-.+.+.....+.+.+-++.+
T Consensus 89 adiVVitAg~~~~--~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiiv 135 (160)
T d1i0za1 89 SKIVVVTAGVRQQ--EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIV 135 (160)
T ss_dssp CSEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ccEEEEecCCccc--cCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999999996432 2234567788999999999999999986654443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.39 E-value=0.00057 Score=58.33 Aligned_cols=104 Identities=12% Similarity=0.020 Sum_probs=67.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcC---Cc---eEEEEecCCCCccc----ccc---cCCCeEEEEecCCCHHHHHHHhcC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRG---AY---QVRAFDLRTNSPWS----HLL---INHGVHCIQGDVVSKIDVEKAARG 78 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G---~~---~V~~l~r~~~~~~~----~~~---~~~~v~~v~gDl~d~~~l~~~l~~ 78 (478)
.||.||||+|.||++++-.|.+.+ .+ .++.+|........ ... ..+....+.. + .+..+++++
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~--~--~~~~~~~~~ 100 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--G--IDPYEVFED 100 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--E--SCHHHHTTT
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccc--c--ccchhhccC
Confidence 479999999999999999998743 21 25555544331100 000 1112222211 1 235678899
Q ss_pred cCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC
Q 011770 79 VDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v 121 (478)
+|+||-+|+... .+..+..+..+.|..-.+.+.+++.++..
T Consensus 101 aDvVvi~ag~~r--kpg~tR~Dll~~N~~I~k~~~~~i~~~a~ 141 (175)
T d7mdha1 101 VDWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVAS 141 (175)
T ss_dssp CSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CceEEEeeccCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999998632 23335677888999999999999999743
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.39 E-value=0.00036 Score=57.32 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=73.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccc-------cccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSH-------LLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~-------~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
|||.|+|+ |.+|++++..|..++. +++..+|+.+...... ...........+| . +.++++|+||
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~----~~~~~adivv 72 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---Y----ADLKGSDVVI 72 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---G----GGGTTCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---H----HHhcCCCEEE
Confidence 58999996 9999999999988874 3499998765421110 0012233443333 2 3478999999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
-+|+..... .....+....|..-.+.+.+...+++.+-++.+-|
T Consensus 73 itag~~~~~--g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 73 VAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp ECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EecccccCC--CcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 999864322 22345677889999999999999998766665543
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00028 Score=62.79 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcC----------------CChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH
Q 011770 8 GIEGKTFLVTGG----------------LGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID 71 (478)
Q Consensus 8 ~~~~~~ILVTGa----------------tGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~ 71 (478)
.+++++||||+| ||-.|.+|++++..+|++ |+++.-..+ ...+.++..+.. ...++
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~-V~li~g~~~-----~~~p~~~~~~~~--~t~~~ 74 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGAN-VTLVSGPVS-----LPTPPFVKRVDV--MTALE 74 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCE-EEEEECSCC-----CCCCTTEEEEEC--CSHHH
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCc-hhhhhcccc-----cCccccccccee--hhhHH
Confidence 578899999976 799999999999999999 999864333 223445665543 44444
Q ss_pred HH----HHhcCcCEEEEcccCCCC
Q 011770 72 VE----KAARGVDCVFHVASYGMS 91 (478)
Q Consensus 72 l~----~~l~~~D~ViHlAa~~~~ 91 (478)
+. +.++++|++|++||....
T Consensus 75 m~~~~~~~~~~~D~~i~aAAvsDf 98 (223)
T d1u7za_ 75 MEAAVNASVQQQNIFIGCAAVADY 98 (223)
T ss_dssp HHHHHHHHGGGCSEEEECCBCCSE
T ss_pred HHHHHHhhhccceeEeeeechhhh
Confidence 43 344689999999997654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.36 E-value=0.00047 Score=57.01 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=71.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------c--cccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------H--LLINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~--~~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
|||.|+| +|.||+.++..|+.+|. ++++.+|+.+..... + ...........+| . +.++++|+|
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~----~~l~~adiV 73 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---W----AALADADVV 73 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---G----GGGTTCSEE
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---H----HHhccccEE
Confidence 6899999 59999999999998874 349999876542110 0 0111223333333 2 246799999
Q ss_pred EEcccCCCCc--hhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 83 FHVASYGMSG--KEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 83 iHlAa~~~~~--~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
|-+||..... ....+..+..+.|+.-.+.+.+...+++.+-++.+-|
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999853211 1112345567889999999999999998766655443
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.36 E-value=0.00052 Score=56.50 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=69.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc--------ccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL--------LINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~--------~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
+||.|+|+ |.+|++++-.|..++..++..+|..+....... .......+... .|.+ .++++|+||
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~--~d~~----~~~~advvv 74 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNYA----DTANSDVIV 74 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGG----GGTTCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEec--CcHH----HhcCCCEEE
Confidence 68999995 999999999998888745999998765321100 01112222211 1222 357899999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
-+|+.... ...+..+..+.|+.-.+.+.+...+++.+-++.+-|
T Consensus 75 itag~~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 75 VTSGAPRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp ECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred EeeeccCC--cCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 99985432 223456677899999999999999988766655543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.35 E-value=0.00078 Score=53.00 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
++++++|||.| +|-+|..-++.|++.|.+ |++++..............++++...+..+. .+++++.|+-+.+
T Consensus 9 ~l~~k~vlVvG-~G~va~~ka~~ll~~ga~-v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----dl~~~~lv~~at~ 81 (113)
T d1pjqa1 9 QLRDRDCLIVG-GGDVAERKARLLLEAGAR-LTVNALTFIPQFTVWANEGMLTLVEGPFDET-----LLDSCWLAIAATD 81 (113)
T ss_dssp CCBTCEEEEEC-CSHHHHHHHHHHHHTTBE-EEEEESSCCHHHHHHHTTTSCEEEESSCCGG-----GGTTCSEEEECCS
T ss_pred EeCCCEEEEEC-CCHHHHHHHHHHHHCCCe-EEEEeccCChHHHHHHhcCCceeeccCCCHH-----HhCCCcEEeecCC
Confidence 57889999999 499999999999999998 9999866553332233445788887777643 3567888886543
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEe
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~S 128 (478)
- . ++ ...+.+.|++.|+ +|++.
T Consensus 82 d----~---------~~----n~~i~~~a~~~~i--lVNv~ 103 (113)
T d1pjqa1 82 D----D---------TV----NQRVSDAAESRRI--FCNVV 103 (113)
T ss_dssp C----H---------HH----HHHHHHHHHHTTC--EEEET
T ss_pred C----H---------HH----HHHHHHHHHHcCC--EEEeC
Confidence 1 1 11 2357888998875 56643
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.32 E-value=0.0011 Score=54.92 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=75.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc--------cccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH--------LLINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~--------~~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
+.||.|.|+ |.+|++++..|..++..++..+|+.+...... ............| +. +.++++|+|
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~advv 75 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLAGADVV 75 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGTTCSEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----cccCCCcEE
Confidence 468999995 99999999988888876799999876532110 0011122222222 22 356789999
Q ss_pred EEcccCCCCc-h--hhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 83 FHVASYGMSG-K--EMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 83 iHlAa~~~~~-~--~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
+-+|+..... . ...+.....+.|....+.+.+.+.+.+.+-++.+-|
T Consensus 76 vitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 76 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999954322 1 112356778999999999999999998776655533
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.0011 Score=50.19 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
..++|+|+|.|. |--|..+++.|.++|++ |++.|.+........ ......+..++.. .+ .+.++|.||-.-|
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~-v~~~D~~~~~~~~~~-~~~~~~~~~~~~~-~~----~~~~~d~vi~SPG 73 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVT-PRVMDTRMTPPGLDK-LPEAVERHTGSLN-DE----WLMAADLIVASPG 73 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCC-CEEEESSSSCTTGGG-SCTTSCEEESBCC-HH----HHHHCSEEEECTT
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCE-EEEeeCCcCchhHHH-Hhhccceeecccc-hh----hhccCCEEEECCC
Confidence 357899999996 88999999999999999 999998765432222 2345555555542 22 3457799998766
Q ss_pred CCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC
Q 011770 88 YGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v 121 (478)
+... + .+++.+++.|+
T Consensus 74 i~~~-----~-------------~~~~~a~~~gi 89 (93)
T d2jfga1 74 IALA-----H-------------PSLSAAADAGI 89 (93)
T ss_dssp SCTT-----S-------------HHHHHHHHTTC
T ss_pred CCCC-----C-------------HHHHHHHHcCC
Confidence 5211 1 26778888887
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.26 E-value=0.00045 Score=57.94 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccc--------cccCCCeEEEEecCCCHHHHHHHh
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSH--------LLINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~--------~~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
+..++..||.|+|+ |.||++++..|..+|. +++..+|+.+...... ............| . +.+
T Consensus 14 ~~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d---~----~~~ 85 (159)
T d2ldxa1 14 EDKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD---Y----NVS 85 (159)
T ss_dssp CCCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS---G----GGG
T ss_pred cccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc---h----hhh
Confidence 34466678999995 9999999999999876 3499998765321100 0111112222222 2 245
Q ss_pred cCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 77 RGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 77 ~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
+++|+||-+|+....+ ..+..+..+.|+...+.+.....+++.+-++.
T Consensus 86 ~~adivvitag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivi 133 (159)
T d2ldxa1 86 ANSKLVIITAGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKII 133 (159)
T ss_dssp TTEEEEEECCSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEE
T ss_pred ccccEEEEecccccCC--CCCHHHHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 7899999999854322 23456778899999999999999888655443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.22 E-value=0.00022 Score=59.79 Aligned_cols=105 Identities=15% Similarity=0.032 Sum_probs=66.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC---ceEE---EEecCCCCccc-------ccccCCCeEEEEecCCCHHHHHHHhc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA---YQVR---AFDLRTNSPWS-------HLLINHGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~---~~V~---~l~r~~~~~~~-------~~~~~~~v~~v~gDl~d~~~l~~~l~ 77 (478)
.+||.|+||+|+||++++..|...+. .+.+ .++........ ..........+... +...+.++
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 79 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEAT----DDPKVAFK 79 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE----SCHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccC----Cchhhhcc
Confidence 45899999999999999999987653 1112 22211110000 00111223333332 22356889
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v 121 (478)
++|+||-+||... .+..+..+..+.|+.-.+.+.+.+.++..
T Consensus 80 ~advViitaG~~~--~pg~~r~dl~~~N~~i~~~~~~~i~k~a~ 121 (154)
T d1y7ta1 80 DADYALLVGAAPR--KAGMERRDLLQVNGKIFTEQGRALAEVAK 121 (154)
T ss_dssp TCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cccEEEeecCcCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999998643 23335567788999999999999999643
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.21 E-value=0.00073 Score=55.75 Aligned_cols=95 Identities=16% Similarity=0.064 Sum_probs=54.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHc-CCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRR-GAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~-G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
|||.|.|||||+|+.|++.|++. .+. ++..+..+............ .....+..|. +.++++|+||-+...
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~--~~~~~~~~~~----~~~~~~DvvF~alp~ 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKD--AGMLHDAFDI----ESLKQLDAVITCQGG 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSC--CCBCEETTCH----HHHTTCSEEEECSCH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCc--ceeeecccch----hhhccccEEEEecCc
Confidence 57999999999999999988764 332 25555433332111111111 1111123333 345789999998841
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC-eEEEEecc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ-RLVYVSTY 130 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~-r~V~~SS~ 130 (478)
+ -+..+...+.+.|.+ .+|=.||.
T Consensus 75 ---~---------------~s~~~~~~l~~~g~~~~VIDlSsd 99 (147)
T d1mb4a1 75 ---S---------------YTEKVYPALRQAGWKGYWIDAAST 99 (147)
T ss_dssp ---H---------------HHHHHHHHHHHTTCCSEEEESSST
T ss_pred ---h---------------HHHHHhHHHHHcCCceEEEeCCcc
Confidence 1 123466677777864 45656664
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.19 E-value=0.0012 Score=54.31 Aligned_cols=94 Identities=20% Similarity=0.090 Sum_probs=53.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+++|.|.||||++|+.|++.|.+++|. ++..+..+.+... ......-+...-++.+ ..+.++|++|-++..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk--~i~~~~~~~~~~~~~~-----~~~~~~d~vf~a~p~ 74 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ--RMGFAESSLRVGDVDS-----FDFSSVGLAFFAAAA 74 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC--EEEETTEEEECEEGGG-----CCGGGCSEEEECSCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc--ceeeccccchhccchh-----hhhccceEEEecCCc
Confidence 468999999999999999999876542 3666643333211 1111111222222211 234578999987741
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
..+..+...+.+.|+ ++|=.||.
T Consensus 75 ------------------~~s~~~~~~~~~~g~-~VID~Ss~ 97 (144)
T d2hjsa1 75 ------------------EVSRAHAERARAAGC-SVIDLSGA 97 (144)
T ss_dssp ------------------HHHHHHHHHHHHTTC-EEEETTCT
T ss_pred ------------------chhhhhccccccCCc-eEEeechh
Confidence 112234555566775 67766664
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.00025 Score=59.75 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=46.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCe--EEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGV--HCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v--~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|||+|.|+ |.+|+.++..|.+.|++ |.+++|++...........+. ........+. +.++++|+||.+.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~D~iii~v 71 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHE-VQGWLRVPQPYCSVNLVETDGSIFNESLTANDP----DFLATSDLLLVTL 71 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSCCSEEEEEEECTTSCEEEEEEEESCH----HHHHTCSEEEECS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCc-eEEEEcCHHHhhhhccccCCccccccccccchh----hhhcccceEEEee
Confidence 68999997 99999999999999999 999999876432211111111 1111111223 3445789999976
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.15 E-value=0.0014 Score=53.73 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=73.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCccc------c-cccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWS------H-LLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~------~-~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
.||.|+|+ |.+|++++..|..+|. +++..+|+.+..... + ............+ |. +.++++|+||
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~~----~~~~daDvVV 74 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--DP----EICRDADMVV 74 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--CG----GGGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--CH----HHhhCCcEEE
Confidence 47999996 9999999999999886 359999976542110 0 0011223333222 22 2467899999
Q ss_pred EcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEe
Q 011770 84 HVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVS 128 (478)
Q Consensus 84 HlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~S 128 (478)
-+|+... ....+..+..+.|..-.+.+.+.+.+++.+-++.+-
T Consensus 75 itaG~~~--~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivv 117 (143)
T d1llda1 75 ITAGPRQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLI 117 (143)
T ss_dssp ECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred Eeccccc--CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence 9998643 222345678889999999999999999876555443
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.0011 Score=56.80 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc------ccCCCeEEEEecCCCHHHHHHHhcCcCE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL------LINHGVHCIQGDVVSKIDVEKAARGVDC 81 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~------~~~~~v~~v~gDl~d~~~l~~~l~~~D~ 81 (478)
..++++|+|.|+ |..|++++..|.+.|..++++++|++....... ...........|+.+.+.+.+.+..+|+
T Consensus 15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di 93 (182)
T d1vi2a1 15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 93 (182)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccce
Confidence 467899999996 888999999999999977889988765422111 1122344567899999999999999999
Q ss_pred EEEcccCCCC
Q 011770 82 VFHVASYGMS 91 (478)
Q Consensus 82 ViHlAa~~~~ 91 (478)
|||+...++.
T Consensus 94 iIN~Tp~G~~ 103 (182)
T d1vi2a1 94 LTNGTKVGMK 103 (182)
T ss_dssp EEECSSTTST
T ss_pred eccccCCccc
Confidence 9999886654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.11 E-value=0.00015 Score=62.51 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=32.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|||.|+||+|.+|++|++.|.+.|++ |++.+|++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~-V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECCHH
Confidence 57999999999999999999999999 999998754
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.10 E-value=8.2e-05 Score=62.49 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=66.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCC-----c-eEEEEecCCCCcccc-------cccCCCeEEEEecCCCHHHHHHHhc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGA-----Y-QVRAFDLRTNSPWSH-------LLINHGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~-----~-~V~~l~r~~~~~~~~-------~~~~~~v~~v~gDl~d~~~l~~~l~ 77 (478)
.+||.|+||+|.||++++-.|.+.+. . .++.+|......... .........+.+ . .+..+.++
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~--~~~~~~~~ 78 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIA--T--DKEEIAFK 78 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEE--E--SCHHHHTT
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccccccccc--C--cccccccC
Confidence 46899999999999999999986532 1 245555433211000 001112222222 1 12456788
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcC
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFG 120 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~ 120 (478)
++|+||-+|+.... +..+..+..+.|..-.+.+.+...++.
T Consensus 79 ~~dvVVitag~~~~--~g~sr~dll~~N~~i~k~~~~~i~k~a 119 (154)
T d5mdha1 79 DLDVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYA 119 (154)
T ss_dssp TCSEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHS
T ss_pred CceEEEEecccCCC--CCCchhHHHHHhHHHHHHHHHHHHhhC
Confidence 99999999986432 233456778999999999999998863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.10 E-value=0.00027 Score=60.22 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
++++|||+||+|-+|...++.+...|.+ |++.++++... .....-+.+.+ .|..+...-....+++|+||++.+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~-vi~~~~~~~~~--~~~~~lGa~~~-i~~~~~~~~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLR-VLAAASRPEKL--ALPLALGAEEA-ATYAEVPERAKAWGGLDLVLEVRG 100 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSGGGS--HHHHHTTCSEE-EEGGGHHHHHHHTTSEEEEEECSC
T ss_pred CCCEEEEEeccccchhhhhhhhcccccc-ccccccccccc--cccccccccee-eehhhhhhhhhccccccccccccc
Confidence 5789999999999999999999999998 99998765422 11222233332 355444433344568999999875
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.04 E-value=0.00054 Score=56.39 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=73.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC-ceEEEEecCCCCcccc------c--ccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGA-YQVRAFDLRTNSPWSH------L--LINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~-~~V~~l~r~~~~~~~~------~--~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
|||.|+|+ |.+|++++..|..+|. +++..+|+.+...... . ........... .|. +.++++|+|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~--~d~----~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADY----SLLKGSEII 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCG----GGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC--CCH----HHhccccEE
Confidence 58999996 9999999999988774 4599999765421110 0 01111222221 122 267899999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
|-+|+.... +..+..+....|..-...+.+.+.+++.+-++.+-|
T Consensus 74 vitag~~~~--~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 74 VVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp EECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred EEeccccCC--CCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 999985332 223456777889999999999999998766555544
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.04 E-value=0.00031 Score=60.44 Aligned_cols=74 Identities=24% Similarity=0.254 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC---HHHHHHHh--cCcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS---KIDVEKAA--RGVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d---~~~l~~~l--~~~D~ViH 84 (478)
++.+|||+||+|-+|+..++.....|.+ |+++++++... ......+...+ .|-.+ .+.+.+.. +++|+||+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~-vi~~~~~~~~~--~~~~~~Ga~~v-i~~~~~~~~~~~~~~~~~~Gvd~v~D 104 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCK-VVGAAGSDEKI--AYLKQIGFDAA-FNYKTVNSLEEALKKASPDGYDCYFD 104 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHH--HHHHHTTCSEE-EETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCE-EEEeCCCHHHH--HHHHhhhhhhh-cccccccHHHHHHHHhhcCCCceeEE
Confidence 5789999999999999999999999998 99998765421 12222233322 23333 33333333 36999999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+.+
T Consensus 105 ~vG 107 (182)
T d1v3va2 105 NVG 107 (182)
T ss_dssp SSC
T ss_pred ecC
Confidence 986
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.0017 Score=50.77 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~Vi 83 (478)
...||.|.| +|.+|+-++.+..+.|++ |+++|.++..+.. .-.-+++.+|..|.+.+.+... ++|+|-
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~lG~~-v~v~d~~~~~PA~----~va~~~i~~~~~d~~~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRLGVE-VIAVDRYADAPAM----HVAHRSHVINMLDGDALRRVVELEKPHYIV 79 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTTTCE-EEEEESSTTCGGG----GGSSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHCCCE-EEEEcCCCCCchh----hcCCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence 456899999 599999999999999999 9999987653321 1123678899999999988774 579884
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00096 Score=55.42 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=57.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc--cccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW--SHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
+.+|+|.|. |-+|.++++.|.+.|++ |++++..+.... .......++.++.||.+|++.++++ ++++|.||=+.
T Consensus 3 knHiII~G~-g~~g~~l~~~L~~~~~~-v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 3 KDHFIVCGH-SILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCC-EEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 346899996 99999999999999999 999987653211 1123456899999999999998775 46789998775
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.00038 Score=59.31 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH---hc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA---AR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~---l~--~~D~ViH 84 (478)
++.+|||+||+|-+|...++.+...|.+ |+++++++... .....-+...+ .|.++.+..+++ .. ++|+||+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~-vi~~~~~~~~~--~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLK-ILGTAGTEEGQ--KIVLQNGAHEV-FNHREVNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHH--HHHHHTTCSEE-EETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEeccccccccccccccccCcc-ccccccccccc--ccccccCcccc-cccccccHHHHhhhhhccCCceEEee
Confidence 5789999999999999999999999998 99998654311 11122233322 366665433333 22 5899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+.+
T Consensus 104 ~~g 106 (174)
T d1yb5a2 104 MLA 106 (174)
T ss_dssp SCH
T ss_pred ccc
Confidence 875
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.74 E-value=0.00099 Score=56.05 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=42.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCC-eEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG-VHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~-v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|||.|.| +|.+|+.+++.|.++|++ |++.||++.... .....+ +... .| + .++++++|+||-+.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~-V~~~d~~~~~~~--~a~~~~~~~~~-~~--~----~~~~~~~DiIilav 65 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHY-LIGVSRQQSTCE--KAVERQLVDEA-GQ--D----LSLLQTAKIIFLCT 65 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHHHHH--HHHHTTSCSEE-ES--C----GGGGTTCSEEEECS
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCE-EEEEECCchHHH--HHHHhhcccee-ee--e----cccccccccccccC
Confidence 5799997 599999999999999998 999998754211 111112 1111 11 1 23567899988644
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.72 E-value=0.0024 Score=51.32 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=51.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEE-EecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRA-FDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~-l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
|||.|.|++|-.|+.+.+.+.++|++ +++ ++.... +.++++|+||....+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~-l~~~id~~~~--------------------------~~~~~~DVvIDFS~p-- 51 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHE-LVLKVDVNGV--------------------------EELDSPDVVIDFSSP-- 51 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEETTEE--------------------------EECSCCSEEEECSCG--
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCe-EEEEECCCcH--------------------------HHhccCCEEEEecCH--
Confidence 57999999999999999999999988 554 332211 113568999998642
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
.++...++.|.++++ .+|.-+|
T Consensus 52 ----------------~~~~~~l~~~~~~~~-p~ViGTT 73 (128)
T d1vm6a3 52 ----------------EALPKTVDLCKKYRA-GLVLGTT 73 (128)
T ss_dssp ----------------GGHHHHHHHHHHHTC-EEEECCC
T ss_pred ----------------HHHHHHHHHHHhcCC-CEEEEcC
Confidence 235568999999997 5554444
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.71 E-value=0.0029 Score=53.00 Aligned_cols=35 Identities=31% Similarity=0.608 Sum_probs=31.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|++|.+.| .|.+|+.+++.|+++||+ |.+.||++.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~-v~~~d~~~~ 35 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYL-LNVFDLVQS 35 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCE-EEEECSSHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCe-EEEEECchh
Confidence 56899998 799999999999999999 999998754
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.70 E-value=0.00045 Score=58.04 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|||.|+ |-+|+.+++.|.+.|..+|++..|+...... ....-+.+ ..+.+++.+.+.++|+||.+.+
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~-l~~~~~~~-----~~~~~~~~~~l~~~Divi~ats 93 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVE-LARDLGGE-----AVRFDELVDHLARSDVVVSATA 93 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHH-HHHHHTCE-----ECCGGGHHHHHHTCSEEEECCS
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHH-HHHhhhcc-----cccchhHHHHhccCCEEEEecC
Confidence 467899999996 9999999999999998658888776442211 11111222 2345677888899999999987
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 94 s 94 (159)
T d1gpja2 94 A 94 (159)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.64 E-value=0.00067 Score=57.83 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=41.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCC-eEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHG-VHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~-v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|+||.|.||||++|..|++.|.+.-+-++..+..++..........+. .........+.+ +..+++|+||-+..
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~---~~~~~~dvvf~a~p 75 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE---KVSKNCDVLFTALP 75 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHH---HHHHHCSEEEECCS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHh---HhccccceEEEccc
Confidence 578999999999999999988875332366554332221111111111 111112223433 33457899997765
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.62 E-value=0.00086 Score=57.43 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=26.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEe
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFD 43 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~ 43 (478)
|+||.|.|||||+|..|++.|.+. ..+ +..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~e-i~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMT-ITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEE-EEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCc-eEeeE
Confidence 579999999999999999999886 444 55543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.57 E-value=0.0007 Score=59.21 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=30.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT 46 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~ 46 (478)
|||.|.| .||+|..++..|.++|++ |+++|.++
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~-V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHE-VIGVDVSS 33 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCE-EEEECSCH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCc-EEEEeCCH
Confidence 5799997 799999999999999999 99999754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.56 E-value=0.00083 Score=57.46 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHh--cCcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAA--RGVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l--~~~D~ViH 84 (478)
++.+|||+||+|-+|...++.+...|.+ |++++++++.. ......+...+ .|..+++ .+.+.. +++|+||+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~-vi~~~~~~~~~--~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~~g~d~v~d 100 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDAKR--EMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLN 100 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHHHH--HHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEECCCCCcccccchhhcccccc-ceeeecccccc--ccccccccccc-ccCCccCHHHHHHHHhCCCCEEEEEe
Confidence 4679999999999999999999899998 99988764321 22223344432 3555543 333333 36999999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+.+
T Consensus 101 ~~g 103 (183)
T d1pqwa_ 101 SLA 103 (183)
T ss_dssp CCC
T ss_pred ccc
Confidence 986
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.00053 Score=58.58 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHH---HHHHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKID---VEKAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~---l~~~l~--~~D~ViH 84 (478)
++.+|+|+||+|-+|..+++.....|.+ |++.++++.... ....-+...+ .|.++++. +.++-. ++|+|++
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~-Vi~~~~s~~k~~--~~~~lGa~~v-i~~~~~d~~~~v~~~t~g~g~d~v~d 103 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKAQ--SALKAGAWQV-INYREEDLVERLKEITGGKKVRVVYD 103 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEESSHHHHH--HHHHHTCSEE-EETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCe-EeecccchHHHH--HHHhcCCeEE-EECCCCCHHHHHHHHhCCCCeEEEEe
Confidence 4679999999999999999999999998 999988765321 1112233322 36665443 333332 5899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+.+
T Consensus 104 ~~g 106 (179)
T d1qora2 104 SVG 106 (179)
T ss_dssp CSC
T ss_pred Ccc
Confidence 986
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.43 E-value=0.0027 Score=54.31 Aligned_cols=64 Identities=25% Similarity=0.289 Sum_probs=49.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|.|.| .|-||+.+++.|..-|.+ |++.|+.+... +..-.++++++++.+|+|+-+..
T Consensus 39 ~l~gk~vgIiG-~G~IG~~va~~l~~~g~~-v~~~d~~~~~~---------------~~~~~~~l~ell~~sDiv~~~~p 101 (181)
T d1qp8a1 39 LIQGEKVAVLG-LGEIGTRVGKILAALGAQ-VRGFSRTPKEG---------------PWRFTNSLEEALREARAAVCALP 101 (181)
T ss_dssp CCTTCEEEEES-CSTHHHHHHHHHHHTTCE-EEEECSSCCCS---------------SSCCBSCSHHHHTTCSEEEECCC
T ss_pred cccCceEEEec-cccccccceeeeeccccc-ccccccccccc---------------ceeeeechhhhhhccchhhcccc
Confidence 36789999999 699999999999999998 99998875421 11111247789999999987765
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 102 l 102 (181)
T d1qp8a1 102 L 102 (181)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.41 E-value=0.0011 Score=56.41 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=48.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
|||.|.|| |-+|..++..|.++|++ |.+++|++..... .....+..+..........++.++++++|+||-+
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQS-VLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 79999996 99999999999999998 9999986442100 0011111222211111123467788999999987
Q ss_pred c
Q 011770 86 A 86 (478)
Q Consensus 86 A 86 (478)
.
T Consensus 80 v 80 (184)
T d1bg6a2 80 V 80 (184)
T ss_dssp S
T ss_pred E
Confidence 5
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.37 E-value=0.0039 Score=52.35 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecC--CCHHHHHHHh-----cCcCEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDV--VSKIDVEKAA-----RGVDCV 82 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl--~d~~~l~~~l-----~~~D~V 82 (478)
.+.+|+|+| +|-+|...++.+...|.+ |+++++++.............. +..|- .+..++.+.+ .++|+|
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~-vi~v~~~~~r~~~a~~~ga~~~-~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVT-LVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTCSEE-EECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhccc-ccccchHHHHHHHHHHcCCcEE-EeccccccccchhhhhhhcccccCCcee
Confidence 467999997 699999999999999997 9999976542211111111222 22232 2333443333 368999
Q ss_pred EEccc
Q 011770 83 FHVAS 87 (478)
Q Consensus 83 iHlAa 87 (478)
|.+++
T Consensus 103 id~~g 107 (170)
T d1e3ja2 103 IDCSG 107 (170)
T ss_dssp EECSC
T ss_pred eecCC
Confidence 99987
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.0017 Score=54.83 Aligned_cols=75 Identities=20% Similarity=0.079 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
++.+|+|.|+ |-+|...++.+...|.+ |+++++++..... ...-+...+.-...+.+..++..++.|+|+.+.+.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~-vi~~~~~~~k~~~--a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAE-TYVISRSSRKRED--AMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCE-EEEEESSSTTHHH--HHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECC-CCcchhHHHHhhhcccc-ccccccchhHHHH--hhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 5689999986 99999999888889998 9999987653211 11112222221122334455556689999999764
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.35 E-value=0.0016 Score=55.48 Aligned_cols=74 Identities=22% Similarity=0.127 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCH-HHHHHHh--cCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK-IDVEKAA--RGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~-~~l~~~l--~~~D~ViHlA 86 (478)
++.+|||+||+|-+|+..++.....|.+ |++..+++..... ...-+...+ .|-.+. ++..+.. +++|+||++.
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~-Viat~~s~~k~~~--~~~lGa~~v-i~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAAEHDY--LRVLGAKEV-LAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTTCHHH--HHHTTCSEE-EECC---------CCSCCEEEEEECS
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCc-eEEecCchHHHHH--HHhccccee-eecchhHHHHHHHhhccCcCEEEEcC
Confidence 4678999999999999999999999999 9999876553211 112222221 132221 1222222 2689999998
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
+
T Consensus 107 g 107 (176)
T d1xa0a2 107 G 107 (176)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.33 E-value=0.0023 Score=55.10 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc------------cccccCCCeEEEEecCCCHHHHHHH
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW------------SHLLINHGVHCIQGDVVSKIDVEKA 75 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~------------~~~~~~~~v~~v~gDl~d~~~l~~~ 75 (478)
.|.|+||.|.| +|-.|++++..|.++|++ |++.+|++.... +....++++.+ ..+++++
T Consensus 4 ~~~m~KI~ViG-aG~wGtAlA~~La~~g~~-V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-------t~~l~~a 74 (189)
T d1n1ea2 4 LLYLNKAVVFG-SGAFGTALAMVLSKKCRE-VCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-------TSDVEKA 74 (189)
T ss_dssp CCCEEEEEEEC-CSHHHHHHHHHHHTTEEE-EEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-------ESCHHHH
T ss_pred cceeceEEEEC-CCHHHHHHHHHHHHcCCe-EEEEEecHHHHHHHhhccccccccccccccccccc-------chhhhhc
Confidence 35567899999 599999999999999998 999987543110 00111223332 2347788
Q ss_pred hcCcCEEEEcc
Q 011770 76 ARGVDCVFHVA 86 (478)
Q Consensus 76 l~~~D~ViHlA 86 (478)
++++|+||-+.
T Consensus 75 ~~~ad~iiiav 85 (189)
T d1n1ea2 75 YNGAEIILFVI 85 (189)
T ss_dssp HTTCSCEEECS
T ss_pred cCCCCEEEEcC
Confidence 99999998865
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.28 E-value=0.002 Score=53.66 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=50.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCc--eEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAY--QVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~--~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
||.|.|||||+|..|++.|.+..+. ++..+..+.+.. .......-.....+..+ ..+.++|.++-++..
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G--~~~~~~~~~~~~~~~~~-----~~~~~~d~~f~~~~~-- 73 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG--KSLKFKDQDITIEETTE-----TAFEGVDIALFSAGS-- 73 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT--CEEEETTEEEEEEECCT-----TTTTTCSEEEECSCH--
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc--ccccccCCcccccccch-----hhhhhhhhhhhccCc--
Confidence 7999999999999999988776543 244443222111 11111111222223222 234578888887742
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
..+......+.+.++ ++|=.|+.
T Consensus 74 ----------------~~s~~~~~~~~~~~~-~VIDlSsd 96 (154)
T d2gz1a1 74 ----------------STSAKYAPYAVKAGV-VVVDNTSY 96 (154)
T ss_dssp ----------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred ----------------cchhhHHhhhccccc-eehhcChh
Confidence 112234445556665 66666664
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.002 Score=46.67 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++++|||+||+|-+|+..++.+...|++ |++..++++
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~-Vi~~t~s~~ 67 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRES 67 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGG
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcCCe-EEEEECCHH
Confidence 35678999999999999999998999999 999987654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.01 Score=49.79 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCe-EEEEecCCCHHHHHHHhc-----CcCEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGV-HCIQGDVVSKIDVEKAAR-----GVDCVF 83 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v-~~v~gDl~d~~~l~~~l~-----~~D~Vi 83 (478)
++.+|+|.|+ |-+|...+..+...|..+|++.|+++.... ....-+. .++..+-.+..+..+.++ ++|+||
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~--~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLS--KAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHH--HHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHH--HHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence 4678999986 999999999999999955999987654211 1112233 233334445554444442 689999
Q ss_pred Eccc
Q 011770 84 HVAS 87 (478)
Q Consensus 84 HlAa 87 (478)
.+.+
T Consensus 103 d~~G 106 (171)
T d1pl8a2 103 ECTG 106 (171)
T ss_dssp ECSC
T ss_pred eccC
Confidence 9987
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.14 E-value=0.00073 Score=57.20 Aligned_cols=38 Identities=34% Similarity=0.332 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS 48 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~ 48 (478)
++.+|||+||+|-+|+..++.....|++ |+++.+++..
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~-Viat~~s~~k 60 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNREA 60 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSST
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCc-eEEEecCHHH
Confidence 3567999999999999999988889999 9999887653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.10 E-value=0.0027 Score=54.20 Aligned_cols=76 Identities=20% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC--HHHH----HHHh--cCcC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS--KIDV----EKAA--RGVD 80 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d--~~~l----~~~l--~~~D 80 (478)
.++.+|||+|+ |-||...++.+...|..+|+++++++... .....-+...+ .|.++ ..+. .+.. .++|
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~--~~a~~lGa~~v-i~~~~~~~~~~~~~i~~~~~~~g~D 102 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRL--KLAEEIGADLT-LNRRETSVEERRKAIMDITHGRGAD 102 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHH--HHHHHTTCSEE-EETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEECC-Cccchhheecccccccccccccccccccc--cccccccceEE-EeccccchHHHHHHHHHhhCCCCce
Confidence 35789999996 89999999999999985499998865421 11112222221 24433 2222 2222 2689
Q ss_pred EEEEcccC
Q 011770 81 CVFHVASY 88 (478)
Q Consensus 81 ~ViHlAa~ 88 (478)
+||.+.+.
T Consensus 103 vvid~vG~ 110 (182)
T d1vj0a2 103 FILEATGD 110 (182)
T ss_dssp EEEECSSC
T ss_pred EEeecCCc
Confidence 99999873
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0052 Score=51.59 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
.++.+|+|.|+ |-||...++.+...|.+ |+++++++... .....-+... ..|..+.+......+++|+||.+.+.
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~-~i~~~~~~~~~--~~a~~lGad~-~i~~~~~~~~~~~~~~~D~vid~~g~ 103 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAH-VVAFTTSEAKR--EAAKALGADE-VVNSRNADEMAAHLKSFDFILNTVAA 103 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSGGGH--HHHHHHTCSE-EEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCCEEEEecc-chHHHHHHHHhhccccc-chhhccchhHH--HHHhccCCcE-EEECchhhHHHHhcCCCceeeeeeec
Confidence 35689999986 88999999988889998 88888765522 1111222222 24777777777677789999999873
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0016 Score=54.68 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=56.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-CCceEE-EEecCCCCcccc-c-----ccCCCeEEEEecCCCHHHHHHHhcCcCEE
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR-GAYQVR-AFDLRTNSPWSH-L-----LINHGVHCIQGDVVSKIDVEKAARGVDCV 82 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~-~l~r~~~~~~~~-~-----~~~~~v~~v~gDl~d~~~l~~~l~~~D~V 82 (478)
.+||.|.|++|-+|+.+++.+.+. +.+ ++ ++++..+..... . ....++.. .- +++..++.+|+|
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~-lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~-~~------~~~~~~~~~DVi 75 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQ-LGAALEREGSSLLGSDAGELAGAGKTGVTV-QS------SLDAVKDDFDVF 75 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEE-CCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ES------CSTTTTTSCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEecccchhccchhhhhhccccCCcee-ec------cHHHHhcccceE
Confidence 468999999999999999999876 555 44 344443321100 0 00111111 22 234466789999
Q ss_pred EEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 83 FHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 83 iHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
|..... .++...++.|.++++ .+|.-+|
T Consensus 76 IDFs~p------------------~~~~~~~~~a~~~~~-~~ViGTT 103 (162)
T d1diha1 76 IDFTRP------------------EGTLNHLAFCRQHGK-GMVIGTT 103 (162)
T ss_dssp EECSCH------------------HHHHHHHHHHHHTTC-EEEECCC
T ss_pred EEeccH------------------HHHHHHHHHHHhccc-eeEEecC
Confidence 998631 345568899999997 5554444
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.01 E-value=0.013 Score=43.55 Aligned_cols=70 Identities=17% Similarity=0.073 Sum_probs=50.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
|||-++|-.|-==+.|++.|.++|++ |.+-|+..+.. ...+...++++..+. +.+ -++++|.||...|+.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~-VsGSD~~~~~~-t~~L~~~Gi~i~~gh--~~~----~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGND-VYGSNIEETER-TAYLRKLGIPIFVPH--SAD----NWYDPDLVIKTPAVR 71 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSSCCHH-HHHHHHTTCCEESSC--CTT----SCCCCSEEEECTTCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCe-EEEEeCCCChh-HHHHHHCCCeEEeee--ccc----ccCCCCEEEEecCcC
Confidence 67999987776666899999999999 99999875432 234556677765542 222 236789999998863
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.99 E-value=0.0009 Score=57.53 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=26.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEe
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFD 43 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~ 43 (478)
.++.||.|.|||||+|+.|++.|.+.-+-++..+.
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 45679999999999999999999875332355554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.98 E-value=0.0024 Score=53.77 Aligned_cols=36 Identities=22% Similarity=0.527 Sum_probs=30.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~~ 47 (478)
||+|+|.| .|.+|..+++.|.+.|+. +|++.|+++.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~ 37 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPE 37 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence 56899998 699999999999999963 3888887654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.0047 Score=52.89 Aligned_cols=75 Identities=20% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHh-cCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAA-RGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l-~~~D~ViHlA 86 (478)
+.+|||+||+|-||+..++.....|.+.|++.+.++.... ......+... ..|.++++ .+.++. +++|+||++.
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~-~l~~~~gad~-vi~~~~~~~~~~~~~~~~~GvDvv~D~v 108 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCL-FLTSELGFDA-AVNYKTGNVAEQLREACPGGVDVYFDNV 108 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHH-HHHHHSCCSE-EEETTSSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHh-hhhhcccceE-EeeccchhHHHHHHHHhccCceEEEecC
Confidence 3689999999999999999988899873444444332111 1111122222 23454432 233332 3699999998
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
+
T Consensus 109 G 109 (187)
T d1vj1a2 109 G 109 (187)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.74 E-value=0.002 Score=53.87 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=46.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|||.|.| .|.+|+.+++.|+++|++ |++.||++.... .....+... . ++..++++++|+||-|-.
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~--~~~~~~~~~----~---~~~~e~~~~~d~ii~~v~ 65 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYS-LVVSDRNPEAIA--DVIAAGAET----A---STAKAIAEQCDVIITMLP 65 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCE-EEEECSCHHHHH--HHHHTTCEE----C---SSHHHHHHHCSEEEECCS
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCe-EEEEeCCcchhH--HHHHhhhhh----c---ccHHHHHhCCCeEEEEcC
Confidence 5799998 799999999999999999 999998765221 112222222 1 234566778999998763
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.73 E-value=0.035 Score=41.69 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
+.++|.+.|-.|--=+.|++.|.++|++ |.+-|+..+... ......++++..++-. + .++++|.||...|+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~-VsGSD~~~~~~~-~~L~~~Gi~v~~g~~~--~----~i~~~d~vV~S~AI 77 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQ-ISGSDIADGVVT-QRLAQAGAKIYIGHAE--E----HIEGASVVVVSSAI 77 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCE-EEEEESCCSHHH-HHHHHTTCEEEESCCG--G----GGTTCSEEEECTTS
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCE-EEEEeCCCChhh-hHHHHCCCeEEECCcc--c----cCCCCCEEEECCCc
Confidence 4578999986555448899999999999 999998755322 2334467777665432 2 34678999998886
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.66 E-value=0.0057 Score=51.35 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh-----cCcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA-----RGVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l-----~~~D~ViH 84 (478)
++.+|+|+|++|-+|...+..+...|...|++.++++... .....-+.+. ..|.++.+..++.. .++|+||.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~--~~~~~~Ga~~-~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV--EAAKRAGADY-VINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH--HHHHHHTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhH--HHHHHcCCce-eeccCCcCHHHHHHHHhhcccchhhhc
Confidence 4679999999999999999999988975588888765421 1111122222 12334433333332 25899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
+++
T Consensus 104 ~~g 106 (170)
T d1jvba2 104 LNN 106 (170)
T ss_dssp SCC
T ss_pred ccc
Confidence 986
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.42 E-value=0.0077 Score=48.08 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=52.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHH-hcCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA-ARGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~-l~~~D~ViHlA 86 (478)
|.|+|.| .|-+|+.+++.|. |++ |.+++..+... ......++.++.||.+|++.++++ +++++.++=+.
T Consensus 1 kHivI~G-~g~~g~~l~~~L~--~~~-i~vi~~d~~~~--~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~ 70 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELR--GSE-VFVLAEDENVR--KKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNL 70 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSC--GGG-EEEEESCTTHH--HHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHc--CCC-CEEEEcchHHH--HHHHhcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence 4688998 5889999999994 566 88887665422 233456899999999999988875 45788888654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.31 E-value=0.0059 Score=51.69 Aligned_cols=75 Identities=23% Similarity=0.102 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCC---HHHHHHHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS---KIDVEKAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d---~~~l~~~l~--~~D~ViH 84 (478)
++.+|+|.|+ |-||...++.+...|..+|+++|+++.... ....-+... ..|..+ .+.+.+... ++|+||.
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~--~a~~lGa~~-~i~~~~~~~~~~v~~~t~g~G~D~vid 102 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVE--AAKFYGATD-ILNYKNGHIEDQVMKLTNGKGVDRVIM 102 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHH--HHHHHTCSE-EECGGGSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHH--HHHhhCccc-cccccchhHHHHHHHHhhccCcceEEE
Confidence 4678999985 999999999888889855999987654211 111122221 123333 233444443 5899999
Q ss_pred cccC
Q 011770 85 VASY 88 (478)
Q Consensus 85 lAa~ 88 (478)
+++.
T Consensus 103 ~~g~ 106 (174)
T d1jqba2 103 AGGG 106 (174)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 9973
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.25 E-value=0.004 Score=51.40 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=45.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|||.|.| .|.+|+.+++.|+++|++ |++.+++++..... ...+.... . +..++++++|+||-|..
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~-v~~~~~~~~~~~~~--~~~~~~~~-~------~~~e~~~~~diIi~~v~ 65 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVE-VVTSLEGRSPSTIE--RARTVGVT-E------TSEEDVYSCPVVISAVT 65 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCE-EEECCTTCCHHHHH--HHHHHTCE-E------CCHHHHHTSSEEEECSC
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCe-EEEEcCchhHHHHH--hhhccccc-c------cHHHHHhhcCeEEEEec
Confidence 5799997 799999999999999998 99998766532111 11111111 1 23456788999998763
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.036 Score=49.30 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----------------------ccccCCCeEEEEe
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----------------------HLLINHGVHCIQG 64 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----------------------~~~~~~~v~~v~g 64 (478)
++++.+|+|.| .|-+|++++..|...|..+++++|...-.... .....+.++....
T Consensus 27 kL~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~ 105 (247)
T d1jw9b_ 27 ALKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 105 (247)
T ss_dssp HHHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhh
Confidence 35678999999 58899999999999999878888754321100 0001233444333
Q ss_pred cCC-CHHHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 65 DVV-SKIDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 65 Dl~-d~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
+.. +.+.....+.+.|+||.+.. |......+-++|.++++ .+|+.+...
T Consensus 106 ~~~~~~~~~~~~~~~~divid~~d-----------------~~~~~~~in~~~~~~~i-p~i~g~~~~ 155 (247)
T d1jw9b_ 106 NALLDDAELAALIAEHDLVLDCTD-----------------NVAVRNQLNAGCFAAKV-PLVSGAAIR 155 (247)
T ss_dssp CSCCCHHHHHHHHHTSSEEEECCS-----------------SHHHHHHHHHHHHHHTC-CEEEEEEEB
T ss_pred hhhhhhccccccccccceeeeccc-----------------hhhhhhhHHHHHHHhCC-Ccccccccc
Confidence 332 34455667778899888753 12233356778888887 577765544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.22 E-value=0.0091 Score=50.48 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=51.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+.+|.|.| .|-+|+.+++.|++.|++ |++.||+++................ -....+++.+.+..+|.++-+..
T Consensus 2 ~~nIg~IG-lG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 2 QADIALIG-LAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDFLANEAKGTKVL-GAHSLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHHHHTTTTTSSCE-ECSSHHHHHHHBCSSCEEEECSC
T ss_pred CCcEEEEe-EhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHhcccccccc-chhhhhhhhhhhcccceEEEecC
Confidence 35799999 699999999999999999 9999988753211111111000011 13466778888899999988763
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.14 E-value=0.008 Score=51.90 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|.|.| .|-||+.+++.|..-|.+ |++.|+.... ....... ..++++++++.+|+|+-+..
T Consensus 40 el~gk~vgIiG-~G~IG~~va~~l~~fg~~-V~~~d~~~~~----~~~~~~~--------~~~~l~~~l~~sDii~~~~p 105 (197)
T d1j4aa1 40 EVRDQVVGVVG-TGHIGQVFMQIMEGFGAK-VITYDIFRNP----ELEKKGY--------YVDSLDDLYKQADVISLHVP 105 (197)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSCCH----HHHHTTC--------BCSCHHHHHHHCSEEEECSC
T ss_pred cccCCeEEEec-ccccchhHHHhHhhhccc-ccccCccccc----cccccee--------eeccccccccccccccccCC
Confidence 46789999999 799999999999999998 9999876441 1111111 12347778888998877765
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 106 l 106 (197)
T d1j4aa1 106 D 106 (197)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.016 Score=48.18 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=47.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
...+|+|+|.|.+..+|+-|+..|.++|.. |+.++.... .+.+..+++|+||.+++
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gat-Vt~~h~~t~-----------------------~l~~~~~~ADivI~a~G 89 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCT-TTVTHRFTK-----------------------NLRHHVENADLLIVAVG 89 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCE-EEEECSSCS-----------------------CHHHHHHHCSEEEECSC
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcc-ccccccccc-----------------------hhHHHHhhhhHhhhhcc
Confidence 467899999999999999999999999998 998864432 14455678899999998
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 90 ~ 90 (166)
T d1b0aa1 90 K 90 (166)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.12 E-value=0.021 Score=47.74 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
++++|+|.|+ |-.|++++..|.+.|..+|.++.|+...... ....-+...+ +-. ...++|.|||+...+
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~-L~~~~~~~~~--~~~-------~~~~~DliINaTpiG 84 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQY-LAALYGYAYI--NSL-------ENQQADILVNVTSIG 84 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHH-HHHHHTCEEE--SCC-------TTCCCSEEEECSSTT
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHH-HHHhhhhhhh--hcc-------cccchhhheeccccC
Confidence 5678999995 8999999999999998659988876542111 0011112221 111 114689999998876
Q ss_pred CCc
Q 011770 90 MSG 92 (478)
Q Consensus 90 ~~~ 92 (478)
+.+
T Consensus 85 m~~ 87 (167)
T d1npya1 85 MKG 87 (167)
T ss_dssp CTT
T ss_pred Ccc
Confidence 544
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.10 E-value=0.061 Score=43.02 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=47.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHc-CCceEEE-EecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRR-GAYQVRA-FDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASYGM 90 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~-l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~~~ 90 (478)
||.|.|++|=.|+.+++.+.+. +++ +.+ +|+..+ .+.+ ...++|+||.+..+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~-l~~~~d~~~~---------------------~~~~--~~~~~DvvIDFS~p-- 54 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLT-LSAELDAGDP---------------------LSLL--TDGNTEVVIDFTHP-- 54 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSE-EEEEECTTCC---------------------THHH--HTTTCSEEEECCCT--
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEecCCc---------------------hhhh--ccccCCEEEEcccH--
Confidence 6999999999999999988765 555 443 332211 0111 22578999998752
Q ss_pred CchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 91 SGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 91 ~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
.++...++.|.++|+ .+|.
T Consensus 55 ----------------~~~~~~~~~~~~~~~-~~Vi 73 (135)
T d1yl7a1 55 ----------------DVVMGNLEFLIDNGI-HAVV 73 (135)
T ss_dssp ----------------TTHHHHHHHHHHTTC-EEEE
T ss_pred ----------------HHHHHHHHHHHhcCC-CEEE
Confidence 124467899999997 4444
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.04 E-value=0.0082 Score=51.03 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=47.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccc----cCC--CeEEEEecCCCHHHHHHHhcCcCEEEEc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLL----INH--GVHCIQGDVVSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~----~~~--~v~~v~gDl~d~~~l~~~l~~~D~ViHl 85 (478)
|+|.|.| +|-.|++++..|.++|++ |+...|.......... ..+ ....-..++.-.++++++++++|+||-+
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~-V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~a 78 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNE-VRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLG 78 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCE-EEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEEC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcc
Confidence 6899999 599999999999999998 9998774331100000 000 1111112233346688899999999886
Q ss_pred c
Q 011770 86 A 86 (478)
Q Consensus 86 A 86 (478)
.
T Consensus 79 v 79 (180)
T d1txga2 79 V 79 (180)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.031 Score=46.66 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+|+|.|.|.+..+|+-|+..|.++|.. |+.++.... .+.+..+++|+||..++
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gat-Vt~~~~~t~-----------------------~l~~~~~~aDivi~a~G 91 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNAT-VTTCHSKTA-----------------------HLDEEVNKGDILVVATG 91 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTCS-----------------------SHHHHHTTCSEEEECCC
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCc-eEEEecccc-----------------------cHHHHHhhccchhhccc
Confidence 578999999999999999999999999998 998875443 14456778999999888
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 92 ~ 92 (170)
T d1a4ia1 92 Q 92 (170)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.0033 Score=53.53 Aligned_cols=37 Identities=32% Similarity=0.342 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.+.+|||+||+|-+|+..++.....|++ |+++.+++.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~-Via~~~~~~ 67 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRES 67 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGG
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCC-eEEEecchh
Confidence 3458999999999999999999999999 999987655
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=94.83 E-value=0.014 Score=50.22 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|.|.| .|-||+.+++.|..-|.+ |++.|+....... ...++. ..++++++++.+|+|+-+..
T Consensus 46 eL~gktvgIiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~~---~~~~~~-------~~~~l~~ll~~sD~i~~~~p 113 (193)
T d1mx3a1 46 RIRGETLGIIG-LGRVGQAVALRAKAFGFN-VLFYDPYLSDGVE---RALGLQ-------RVSTLQDLLFHSDCVTLHCG 113 (193)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEECTTSCTTHH---HHHTCE-------ECSSHHHHHHHCSEEEECCC
T ss_pred eeeCceEEEec-cccccccceeeeeccccc-eeeccCcccccch---hhhccc-------cccchhhccccCCEEEEeec
Confidence 47789999998 799999999999999999 9999876553211 111111 12356777888998876665
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 114 l 114 (193)
T d1mx3a1 114 L 114 (193)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.82 E-value=0.018 Score=45.34 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++++|.| +||+|..++..|.++|.+ |+.+.+.+.
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g~~-Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAGVH-VSLVETQPR 64 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred CCeEEEEC-cchhHHHHHHHhhcccce-EEEEeeccc
Confidence 57899999 599999999999999999 999988754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.78 E-value=0.016 Score=48.78 Aligned_cols=76 Identities=24% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEE--ecCCC-HHHHHHHh--cCcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQ--GDVVS-KIDVEKAA--RGVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~--gDl~d-~~~l~~~l--~~~D~ViH 84 (478)
++.+|+|.|+ |-+|...+..+...|..+|++.++++.... .....+..... .|-.| .+...+.. .++|+||.
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~--~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid 104 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFA--KAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 104 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHH--HHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHH--HHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEe
Confidence 5679999998 558999999999998765888887665321 11122222221 12222 22333333 37999999
Q ss_pred cccC
Q 011770 85 VASY 88 (478)
Q Consensus 85 lAa~ 88 (478)
+.+.
T Consensus 105 ~~G~ 108 (176)
T d2jhfa2 105 VIGR 108 (176)
T ss_dssp CSCC
T ss_pred cCCc
Confidence 9873
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.66 E-value=0.01 Score=49.46 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc-ccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL-LINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~-~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.-+|+|.| .|-.|.+-++.....|.+ |.++|.+........ .....++ .-..+.+.+++.++++|+||-+|-
T Consensus 30 v~pa~V~ViG-aGvaG~~A~~~A~~lGA~-V~~~D~~~~~l~~l~~~~~~~~~---~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 30 VKPGKVVILG-GGVVGTEAAKMAVGLGAQ-VQIFDINVERLSYLETLFGSRVE---LLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp BCCCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGSE---EEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCCcEEEEEC-CChHHHHHHHHHhhCCCE-EEEEeCcHHHHHHHHHhhcccce---eehhhhhhHHHhhccCcEEEEeee
Confidence 3467999999 599999999999999999 999998765321111 1122233 335677889999999999999997
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
+
T Consensus 105 i 105 (168)
T d1pjca1 105 V 105 (168)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.02 Score=48.91 Aligned_cols=67 Identities=24% Similarity=0.332 Sum_probs=49.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
...+++|.|.| .|.||+.+++.|..-|.+ |++.|+...... .... . . ++++++++.+|+|+-++.
T Consensus 41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~------~~~~--~--~---~~l~ell~~sDii~i~~p 105 (188)
T d1sc6a1 41 EARGKKLGIIG-YGHIGTQLGILAESLGMY-VYFYDIENKLPL------GNAT--Q--V---QHLSDLLNMSDVVSLHVP 105 (188)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSCCCCC------TTCE--E--C---SCHHHHHHHCSEEEECCC
T ss_pred cccceEEEEee-cccchhhhhhhcccccce-Eeeccccccchh------hhhh--h--h---hhHHHHHhhccceeeccc
Confidence 46788999998 799999999999999999 999987644211 1111 1 1 246778888998877765
Q ss_pred CC
Q 011770 88 YG 89 (478)
Q Consensus 88 ~~ 89 (478)
..
T Consensus 106 lt 107 (188)
T d1sc6a1 106 EN 107 (188)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.57 E-value=0.018 Score=49.76 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=48.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+++|.|.| .|-||+.+++.|..-|.+ |++.|+..... ....+.+ .+++++++.+|+|+-+..
T Consensus 42 ~l~~ktvgIiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~~~-----~~~~~~~--------~~l~~l~~~~D~v~~~~p 106 (199)
T d1dxya1 42 ELGQQTVGVMG-TGHIGQVAIKLFKGFGAK-VIAYDPYPMKG-----DHPDFDY--------VSLEDLFKQSDVIDLHVP 106 (199)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSCCSS-----CCTTCEE--------CCHHHHHHHCSEEEECCC
T ss_pred cccceeeeeee-ccccccccccccccccee-eeccCCccchh-----hhcchhH--------HHHHHHHHhcccceeeec
Confidence 46779999999 799999999999999999 99999765421 1112221 236677788998876654
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 107 l 107 (199)
T d1dxya1 107 G 107 (199)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.019 Score=49.15 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|+-++|.|.|| |.+|+.++..++..|++ |++.|+++.
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G~~-V~l~D~~~~ 38 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATGHT-VVLVDQTED 38 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCHH
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCCCc-EEEEECChH
Confidence 45589999996 99999999999999999 999998764
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.50 E-value=0.028 Score=44.28 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
+.++|+|.| +||+|..++..|.+.|.+ |+++.+.+.
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~~-Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGKK-VTVIDILDR 64 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccceE-EEEEEecCc
Confidence 467999998 599999999999999999 999988654
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.49 E-value=0.076 Score=42.09 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCC---ChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 9 IEGKTFLVTGGL---GHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 9 ~~~~~ILVTGat---GfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
.+.++|.|.|+| |-.|..+.+.|.+.| .+ |+.+..+.. .-.++..+ -++ .++-..+|.++-
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~-v~pVnP~~~-------~i~G~~~y-~sl------~dlp~~vDlvvi 70 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGK-VYPVNIKEE-------EVQGVKAY-KSV------KDIPDEIDLAII 70 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSE-EEEECSSCS-------EETTEECB-SST------TSCSSCCSEEEE
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCc-EEEeccCcc-------ccCCeEee-cch------hhcCCCCceEEE
Confidence 456899999999 999999999987665 35 888743322 11222222 233 333346898886
Q ss_pred cccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecc
Q 011770 85 VASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTY 130 (478)
Q Consensus 85 lAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~ 130 (478)
+.. -..+..+++.|.+.|++.++.+|+.
T Consensus 71 ~vp------------------~~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 71 VVP------------------KRFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp CSC------------------HHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred ecC------------------hHHhHHHHHHHHHcCCCEEEEeccc
Confidence 653 1234458899999999988888774
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.034 Score=46.50 Aligned_cols=80 Identities=20% Similarity=0.123 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecC--CCHHHHHHHhcCcCEEEEc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDV--VSKIDVEKAARGVDCVFHV 85 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl--~d~~~l~~~l~~~D~ViHl 85 (478)
.+++|+|+|.|-+.-+|+-|+..|.++|.. |+..+..............-......|+ ...+.+++....+|+||..
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaT-Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa 104 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGAT-VYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 104 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCE-EEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCE-EEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence 578999999999999999999999999998 9888654321100000000001112222 3456688888899999988
Q ss_pred ccC
Q 011770 86 ASY 88 (478)
Q Consensus 86 Aa~ 88 (478)
++.
T Consensus 105 vG~ 107 (171)
T d1edza1 105 VPS 107 (171)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.40 E-value=0.015 Score=48.76 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=44.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCC----CHHHHHHHh--cCcCEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV----SKIDVEKAA--RGVDCV 82 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~----d~~~l~~~l--~~~D~V 82 (478)
.++.+|+|.|+ |-+|...++.+...|...|++.++++... .....-+...+ .|.. +.....+.. .++|+|
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~--~~ak~lGa~~~-i~~~~~~~~~~~~~~~~~~~g~D~v 102 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKF--ARAKEFGATEC-INPQDFSKPIQEVLIEMTDGGVDYS 102 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGH--HHHHHHTCSEE-ECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHH--HHHHHhCCcEE-EeCCchhhHHHHHHHHHcCCCCcEe
Confidence 35679999997 56899999999999987577776554321 11111122222 1221 222222222 379999
Q ss_pred EEccc
Q 011770 83 FHVAS 87 (478)
Q Consensus 83 iHlAa 87 (478)
|.+.+
T Consensus 103 id~~G 107 (176)
T d2fzwa2 103 FECIG 107 (176)
T ss_dssp EECSC
T ss_pred eecCC
Confidence 99987
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.31 E-value=0.034 Score=43.26 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=31.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++++|.|| |++|..++..|.+.|.+ |+++.+.+.
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G~~-Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFGTK-VTILEGAGE 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred CCeEEEECC-CccceeeeeeecccccE-EEEEEecce
Confidence 478999995 99999999999999999 999987764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.30 E-value=0.024 Score=47.05 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHH---HHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKI---DVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~---~l~~~l~~~D~ViHlA 86 (478)
++.+|+|.|+ |-+|...+..+...|.+ |+++++++.... ....-+.+.+ .|..+.+ .+.+...+.|.+|-++
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~-Vi~~~~~~~~~~--~a~~~Ga~~~-i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLH-VAAIDIDDAKLE--LARKLGASLT-VNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHHH--HHHHTTCSEE-EETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCc-cceecchhhHHH--hhhccCcccc-ccccchhHHHHHHHhhcCCccccccc
Confidence 4679999885 99999999988889987 999987654211 1112222221 2444433 3344445666666665
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
+
T Consensus 102 ~ 102 (166)
T d1llua2 102 V 102 (166)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.27 E-value=0.025 Score=47.62 Aligned_cols=77 Identities=26% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCe-EEEEecCCC--HHHHHHHh--cCcCEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGV-HCIQGDVVS--KIDVEKAA--RGVDCVF 83 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v-~~v~gDl~d--~~~l~~~l--~~~D~Vi 83 (478)
..+.+|+|+| +|-||...+..+...|..+|++.|+++.... ....-+. ..+...-.| ...+.+.. .++|+||
T Consensus 27 ~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~--~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vi 103 (174)
T d1e3ia2 27 TPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFP--KAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL 103 (174)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHH--HHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHHH--HHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence 3567999997 5999999999999999875888877654221 1111222 222221112 22233222 3799999
Q ss_pred EcccC
Q 011770 84 HVASY 88 (478)
Q Consensus 84 HlAa~ 88 (478)
.|++.
T Consensus 104 e~~G~ 108 (174)
T d1e3ia2 104 DCAGT 108 (174)
T ss_dssp ESSCC
T ss_pred Eeccc
Confidence 99973
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.24 E-value=0.08 Score=44.18 Aligned_cols=110 Identities=10% Similarity=0.058 Sum_probs=63.9
Q ss_pred CCeEEEEcCCChhHHH--HHHHHHHc----CCceEEEEecCCCCccc------c--cccCCCeEEEEecCCCHHHHHHHh
Q 011770 11 GKTFLVTGGLGHVGSA--LCLELVRR----GAYQVRAFDLRTNSPWS------H--LLINHGVHCIQGDVVSKIDVEKAA 76 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~--Lv~~L~~~----G~~~V~~l~r~~~~~~~------~--~~~~~~v~~v~gDl~d~~~l~~~l 76 (478)
++||.|.|| |.+|+. ++..|+.. +.+ ++.+|+++..... . .......++... .+.++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~e-ivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~-----td~~eaL 74 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGST-VTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT-----MNLDDVI 74 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCE-EEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHH
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCE-EEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe-----CChhhcc
Confidence 479999996 988875 34445432 335 9999987542110 0 011122332222 2366788
Q ss_pred cCcCEEEEcccCCCCchhhhchhh------------------------hhHhhhHHHHHHHHHHHHcCCCeEEEE
Q 011770 77 RGVDCVFHVASYGMSGKEMLQFGR------------------------VDEVNINGTCHVIEACLEFGIQRLVYV 127 (478)
Q Consensus 77 ~~~D~ViHlAa~~~~~~~~~~~~~------------------------~~~vNv~gt~nll~aa~~~~v~r~V~~ 127 (478)
+++|+||.+++.+.......+... ...-|+.-.+.+++..++...+-++..
T Consensus 75 ~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~ 149 (171)
T d1obba1 75 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQ 149 (171)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred cCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEE
Confidence 999999999876432211100000 012488888899999999886554443
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.23 E-value=0.025 Score=44.20 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++|+|.|| |++|-.++..|.+.|.+ |+++.|.+.
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~-Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGID-SYIFARGNR 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCE-EEEECSSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhcccc-ceeeehhcc
Confidence 478999995 99999999999999999 999988654
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.031 Score=40.15 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=31.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
+|+|.|.| +|.+|+-++.+-.+.|++ |+++|..+.
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~-v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGIA-VWPVGLDAE 35 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTEE-EEEECTTSC
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCE-EEEEcCCCC
Confidence 57999999 599999999999999999 999986654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.013 Score=49.27 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=49.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccccc---ccCCCeEEEEecCCCHHHHHHHhcCcCEEEE
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHL---LINHGVHCIQGDVVSKIDVEKAARGVDCVFH 84 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~---~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViH 84 (478)
..++|+|+|.|+ |-.+++++..|.+.|.+ |+++.|+........ .....++.+ +..+. ...++|.||+
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~al~~~g~~-i~I~nRt~~ka~~l~~~~~~~~~~~~~--~~~~~-----~~~~~dliIN 85 (170)
T d1nyta1 15 IRPGLRILLIGA-GGASRGVLLPLLSLDCA-VTITNRTVSRAEELAKLFAHTGSIQAL--SMDEL-----EGHEFDLIIN 85 (170)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSHHHHHHHHHHTGGGSSEEEC--CSGGG-----TTCCCSEEEE
T ss_pred CCCCCEEEEECC-cHHHHHHHHHhcccceE-EEeccchHHHHHHHHHHHhhccccccc--ccccc-----cccccceeec
Confidence 467899999995 88899999999999997 999988754321111 111122222 22221 1257899999
Q ss_pred cccCCCC
Q 011770 85 VASYGMS 91 (478)
Q Consensus 85 lAa~~~~ 91 (478)
+...++.
T Consensus 86 ~Tp~G~~ 92 (170)
T d1nyta1 86 ATSSGIS 92 (170)
T ss_dssp CCSCGGG
T ss_pred ccccCcc
Confidence 9876553
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=94.12 E-value=0.09 Score=43.68 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
|++.||.|.| +|.+|+..++.|.+. +.+ ++++..+.+.. ....++ .. ..+.....+++|+|+.+..
T Consensus 1 M~kirvgiiG-~G~ig~~~~~~l~~~~~~e-lvav~~~~~~~----~~~~~~--~~-----~~~~~~~~~~~D~Vvi~tp 67 (170)
T d1f06a1 1 MTNIRVAIVG-YGNLGRSVEKLIAKQPDMD-LVGIFSRRATL----DTKTPV--FD-----VADVDKHADDVDVLFLCMG 67 (170)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHTTCSSEE-EEEEEESSSCC----SSSSCE--EE-----GGGGGGTTTTCSEEEECSC
T ss_pred CCcceEEEEC-ChHHHHHHHHHHHhCCCcE-EEEEEeccccc----cccccc--cc-----chhhhhhccccceEEEeCC
Confidence 3456899999 699999999999875 555 66554333311 111111 11 1223445568999998775
Q ss_pred CCCCch----------hhhchhhhhHhhhHHHHHHHHHHHHcCC
Q 011770 88 YGMSGK----------EMLQFGRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 88 ~~~~~~----------~~~~~~~~~~vNv~gt~nll~aa~~~~v 121 (478)
...... .--..+.....+......+.++|++.+.
T Consensus 68 ~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~ 111 (170)
T d1f06a1 68 SATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN 111 (170)
T ss_dssp TTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCc
Confidence 432110 0000112223445556677777777764
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=94.00 E-value=0.027 Score=48.00 Aligned_cols=70 Identities=13% Similarity=-0.007 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.++++.|.| .|-||+.+++.|..-|.+ |...|+....... ....+ +....++.+.++++|+|+-+..
T Consensus 41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~~--~~~~~-------~~~~~~l~~~l~~sD~v~~~~p 109 (188)
T d2naca1 41 DLEAMHVGTVA-AGRIGLAVLRRLAPFDVH-LHYTDRHRLPESV--EKELN-------LTWHATREDMYPVCDVVTLNCP 109 (188)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHGGGTCE-EEEECSSCCCHHH--HHHHT-------CEECSSHHHHGGGCSEEEECSC
T ss_pred eccccceeecc-ccccchhhhhhhhccCce-EEEEeeccccccc--ccccc-------ccccCCHHHHHHhccchhhccc
Confidence 46788999999 799999999999999998 9999986543211 11111 1122456778899998866654
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 110 l 110 (188)
T d2naca1 110 L 110 (188)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.93 E-value=0.054 Score=45.46 Aligned_cols=77 Identities=23% Similarity=0.253 Sum_probs=49.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEE-EE-ecCCC-HHHHHHHh--cCcCEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHC-IQ-GDVVS-KIDVEKAA--RGVDCVF 83 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~-v~-gDl~d-~~~l~~~l--~~~D~Vi 83 (478)
.++.+|+|+|+ |-+|...+..+...|..+|+++|+++..... ...-+.+. +. -|-.+ .+.+.+.. .++|+||
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~--Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi 104 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEK--AMAVGATECISPKDSTKPISEVLSEMTGNNVGYTF 104 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH--HHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHH--HHhcCCcEEECccccchHHHHHHHHhccccceEEE
Confidence 35678999985 9999999999999997669999987653211 11112222 21 12221 23333333 3799999
Q ss_pred EcccC
Q 011770 84 HVASY 88 (478)
Q Consensus 84 HlAa~ 88 (478)
.+.+.
T Consensus 105 ~~~g~ 109 (176)
T d1d1ta2 105 EVIGH 109 (176)
T ss_dssp ECSCC
T ss_pred EeCCc
Confidence 99873
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.83 E-value=0.01 Score=48.85 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=44.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|||.+.| +|-+|+++++.|.+.|++ |++.+|+..... ......++... .+..++++++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~-i~v~~r~~~~~~-~l~~~~g~~~~-------~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHE-LIISGSSLERSK-EIAEQLALPYA-------MSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCE-EEEECSSHHHHH-HHHHHHTCCBC-------SSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCe-EEEEcChHHhHH-hhccccceeee-------chhhhhhhccceeeeec
Confidence 5799998 799999999999999998 999887644221 11111122211 13456677899998664
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=93.82 E-value=0.023 Score=48.59 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=49.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.++++.|.| .|-||+.+++.|..-|.+ |.+.|+......... .... ...++++++++.+|+|+-+..
T Consensus 44 ~l~g~tvgIiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~~~~--~~~~-------~~~~~l~~ll~~sD~v~l~~p 112 (191)
T d1gdha1 44 KLDNKTLGIYG-FGSIGQALAKRAQGFDMD-IDYFDTHRASSSDEA--SYQA-------TFHDSLDSLLSVSQFFSLNAP 112 (191)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEECSSCCCHHHHH--HHTC-------EECSSHHHHHHHCSEEEECCC
T ss_pred eecccceEEee-cccchHHHHHHHHhhccc-cccccccccccchhh--cccc-------cccCCHHHHHhhCCeEEecCC
Confidence 45689999999 699999999999999998 999987655321110 0001 112357788889998876655
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 113 l 113 (191)
T d1gdha1 113 S 113 (191)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.80 E-value=0.13 Score=42.90 Aligned_cols=76 Identities=9% Similarity=0.053 Sum_probs=44.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEEEecCCC-----------HHHHHHHhcC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVS-----------KIDVEKAARG 78 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d-----------~~~l~~~l~~ 78 (478)
++||.|-| .|-||+.+++.+.++. .+ |+++.-..+..........+...+..+-.. ...+..+.++
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~die-iVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQDDME-LIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK 79 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEE-EEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCCCce-EEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhcc
Confidence 46899999 6999999999998764 44 666543222211111111222233322211 2234555678
Q ss_pred cCEEEEcccC
Q 011770 79 VDCVFHVASY 88 (478)
Q Consensus 79 ~D~ViHlAa~ 88 (478)
+|+|+-|.+.
T Consensus 80 vDvViEcTG~ 89 (172)
T d2czca2 80 VDIIVDATPG 89 (172)
T ss_dssp CSEEEECCST
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.63 E-value=0.036 Score=43.50 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=30.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++++|.|| |++|-.++..|.+.|.+ |+++.+.+.
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~-Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYH-VKLIHRGAM 66 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCE-EEEECSSSC
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccce-EEEEecccc
Confidence 368999994 99999999999999999 999987643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.025 Score=46.80 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=51.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
..+.+|+++|.| .|.||+.+++.|...|.+ |++.++.+-.. .+....+.+.. .+++++...|+||-+.
T Consensus 20 ~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~-V~v~e~dp~~a--l~A~~dG~~v~--------~~~~a~~~adivvtaT 87 (163)
T d1li4a1 20 VMIAGKVAVVAG-YGDVGKGCAQALRGFGAR-VIITEIDPINA--LQAAMEGYEVT--------TMDEACQEGNIFVTTT 87 (163)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHHHH--HHHHHTTCEEC--------CHHHHTTTCSEEEECS
T ss_pred ceecCCEEEEec-cccccHHHHHHHHhCCCe-eEeeecccchh--HHhhcCceEee--------ehhhhhhhccEEEecC
Confidence 346789999999 899999999999999999 99998865422 11122333332 3677888899999887
Q ss_pred c
Q 011770 87 S 87 (478)
Q Consensus 87 a 87 (478)
+
T Consensus 88 G 88 (163)
T d1li4a1 88 G 88 (163)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.56 E-value=0.035 Score=46.56 Aligned_cols=75 Identities=21% Similarity=0.140 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCC--C--HHHHHHHh--cCcCEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV--S--KIDVEKAA--RGVDCV 82 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~--d--~~~l~~~l--~~~D~V 82 (478)
.++.+|+|.|+ |-+|...+..+...|..+|++.|+++.... ....-+.+.+ .|.. | .+...+.. .++|+|
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~--~a~~lGa~~~-i~~~~~d~~~~~~~~~~~~~G~d~v 101 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFP--KAIELGATEC-LNPKDYDKPIYEVICEKTNGGVDYA 101 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHH--HHHHTTCSEE-ECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHH--HHHHcCCcEE-EcCCCchhHHHHHHHHhcCCCCcEE
Confidence 45679999985 999999999999999866999987654321 1112233322 1222 2 22333333 379999
Q ss_pred EEccc
Q 011770 83 FHVAS 87 (478)
Q Consensus 83 iHlAa 87 (478)
|.+++
T Consensus 102 id~~g 106 (174)
T d1p0fa2 102 VECAG 106 (174)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 99987
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.48 E-value=0.065 Score=44.75 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=46.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHH---HHhc-CcCEEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVE---KAAR-GVDCVFH 84 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~---~~l~-~~D~ViH 84 (478)
.++.+|+|.|+ |-+|...+..+...|...|++.++++... .......-.+++ |..+.+..+ +... ++|+||.
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~~Ga~~~i--~~~~~~~~~~i~~~t~gg~D~vid 102 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQLGATHVI--NSKTQDPVAAIKEITDGGVNFALE 102 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHHTCSEEE--ETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHH-HHHHHcCCeEEE--eCCCcCHHHHHHHHcCCCCcEEEE
Confidence 35679999986 99999999988888998456666544311 111111112333 444433333 3322 5899999
Q ss_pred ccc
Q 011770 85 VAS 87 (478)
Q Consensus 85 lAa 87 (478)
|.+
T Consensus 103 ~~G 105 (174)
T d1f8fa2 103 STG 105 (174)
T ss_dssp CSC
T ss_pred cCC
Confidence 987
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=93.48 E-value=0.058 Score=45.08 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=48.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccc---cccCCCeEEEEecCCCHHHHHHHhcCcCEEE
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSH---LLINHGVHCIQGDVVSKIDVEKAARGVDCVF 83 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~---~~~~~~v~~v~gDl~d~~~l~~~l~~~D~Vi 83 (478)
...++++|+|.|+ |-.++.++..|.+.+.+ |+++.|+....... ......+.....|-. .+..+|.||
T Consensus 14 ~~~~~k~vlIlGa-GGaarai~~aL~~~~~~-i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~-------~~~~~diiI 84 (171)
T d1p77a1 14 WLRPNQHVLILGA-GGATKGVLLPLLQAQQN-IVLANRTFSKTKELAERFQPYGNIQAVSMDSI-------PLQTYDLVI 84 (171)
T ss_dssp CCCTTCEEEEECC-SHHHHTTHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC-------CCSCCSEEE
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHcccCce-eeeccchHHHHHHHHHHHhhccccchhhhccc-------cccccceee
Confidence 3467889999995 77899999999986655 99998875422111 011123333333321 246789999
Q ss_pred EcccCCCCc
Q 011770 84 HVASYGMSG 92 (478)
Q Consensus 84 HlAa~~~~~ 92 (478)
++...++.+
T Consensus 85 N~tp~g~~~ 93 (171)
T d1p77a1 85 NATSAGLSG 93 (171)
T ss_dssp ECCCC----
T ss_pred ecccccccc
Confidence 998876543
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.38 E-value=0.047 Score=42.26 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=31.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++++|.| +|++|-.++..|.+.|.+ |+++.+.+.
T Consensus 21 p~~vvIiG-gG~~G~E~A~~l~~~g~~-Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVG-GGYIGLELGIAYRKLGAQ-VSVVEARER 55 (115)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHHhhcccc-eEEEeeecc
Confidence 47899998 599999999999999999 999987654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.046 Score=43.05 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=31.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++++|.|| |++|-.++..|.+.|.+ |+++.|++.
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~-Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSK-TSLMIRHDK 56 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcE-EEEEeeccc
Confidence 478999995 99999999999999999 999988754
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.35 E-value=0.04 Score=46.71 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
...++++.|.| .|-||+.+++.+..-|.+ |++.|+...... ....++++ .+++++++.+|+|+-+..
T Consensus 41 ~l~~k~vgiiG-~G~IG~~va~~~~~fg~~-v~~~d~~~~~~~---~~~~~~~~--------~~l~ell~~sDiv~~~~P 107 (184)
T d1ygya1 41 EIFGKTVGVVG-LGRIGQLVAQRIAAFGAY-VVAYDPYVSPAR---AAQLGIEL--------LSLDDLLARADFISVHLP 107 (184)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEECTTSCHHH---HHHHTCEE--------CCHHHHHHHCSEEEECCC
T ss_pred cccceeeeecc-ccchhHHHHHHhhhccce-EEeecCCCChhH---HhhcCcee--------ccHHHHHhhCCEEEEcCC
Confidence 36678999998 699999999999999998 999987654211 11112222 246778888998876655
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
.
T Consensus 108 l 108 (184)
T d1ygya1 108 K 108 (184)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.083 Score=50.88 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcc--------cc---------------cccCC--CeEEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPW--------SH---------------LLINH--GVHCIQ 63 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~--------~~---------------~~~~~--~v~~v~ 63 (478)
+++.||||.|+ |-+|+.+++.|...|..+++++|...-... .. ....+ .++.+.
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 34568999997 559999999999999966999986432110 00 00012 245555
Q ss_pred ecCCCHHHHHHHhcCcCEEEEcc
Q 011770 64 GDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 64 gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
.++.+.. .+.++++|+||.+.
T Consensus 114 ~~i~~~~--~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 114 NKIQDFN--DTFYRQFHIIVCGL 134 (426)
T ss_dssp SCGGGBC--HHHHTTCSEEEECC
T ss_pred ccccchH--HHHHHhcchheecc
Confidence 5555433 35678889988775
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.052 Score=42.13 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++|+|.| +|++|..++..|.+.|.+ |+++.+.+.
T Consensus 21 p~~vvIiG-gG~ig~E~A~~l~~~G~~-Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVG-AGYIGVELGGVINGLGAK-THLFEMFDA 55 (116)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred CCEEEEEC-CChhhHHHHHHhhccccE-EEEEeecch
Confidence 47899999 599999999999999998 999988754
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.22 E-value=0.055 Score=47.45 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=31.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++|+|.|| |..|...+..|.++|++ |++++|...
T Consensus 6 ~~kVvVIGa-GiaGl~~A~~L~~~G~~-V~vier~~~ 40 (268)
T d1c0pa1 6 QKRVVVLGS-GVIGLSSALILARKGYS-VHILARDLP 40 (268)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSCT
T ss_pred CCcEEEECc-cHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence 468999994 99999999999999998 999998643
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.10 E-value=0.066 Score=41.95 Aligned_cols=33 Identities=21% Similarity=0.036 Sum_probs=29.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR 45 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~ 45 (478)
.++++|.|| |+||..++..|.+.|.+ |+++.++
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG~~-Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIGLD-VTVMVRS 52 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred CCeEEEECC-CccHHHHHHHHhhcCCe-EEEEEec
Confidence 468999994 99999999999999999 9999764
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.06 E-value=0.083 Score=44.40 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=43.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCCCcccccccCCCeEEE----------EecCCCHHHHHHHhcCc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTNSPWSHLLINHGVHCI----------QGDVVSKIDVEKAARGV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~~~~~~~~~~~~v~~v----------~gDl~d~~~l~~~l~~~ 79 (478)
|-||.|-| .|-||+.+++.|.+++ .+ |+++....+..........+.... ...+.....+....+++
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~die-vVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~v 78 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMK-LVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTS 78 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEE-EEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCE-EEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcC
Confidence 45899998 8999999999999874 45 777744333211110000010000 00111112345556689
Q ss_pred CEEEEcccC
Q 011770 80 DCVFHVASY 88 (478)
Q Consensus 80 D~ViHlAa~ 88 (478)
|+|+-|.+.
T Consensus 79 DiViecTG~ 87 (178)
T d1b7go1 79 DIVVDTTPN 87 (178)
T ss_dssp SEEEECCST
T ss_pred CEEEECCCC
Confidence 999999974
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=93.03 E-value=0.082 Score=44.39 Aligned_cols=76 Identities=25% Similarity=0.138 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEec----------------------CC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGD----------------------VV 67 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gD----------------------l~ 67 (478)
+.-+|+|.|| |-+|.+-++-....|.+ |.++|.+...... .....-+++..+ ..
T Consensus 28 ~pa~VvViGa-GvaG~~Aa~~A~~lGA~-V~v~D~~~~~~~~--l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~ 103 (183)
T d1l7da1 28 PPARVLVFGV-GVAGLQAIATAKRLGAV-VMATDVRAATKEQ--VESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK 103 (183)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCSTTHHH--HHHTTCEECCC-----------------------CC
T ss_pred CCcEEEEEcC-cHHHHHHHHHHHHcCCE-EEEEeccHHHHHH--HHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence 3458999995 99999999999999998 9999988764321 111112222111 12
Q ss_pred CHHHHHHHhcCcCEEEEcccCC
Q 011770 68 SKIDVEKAARGVDCVFHVASYG 89 (478)
Q Consensus 68 d~~~l~~~l~~~D~ViHlAa~~ 89 (478)
..+.+.+.+.++|.||-+|-..
T Consensus 104 ~~~~l~~~l~~aDlVI~talip 125 (183)
T d1l7da1 104 QAEAVLKELVKTDIAITTALIP 125 (183)
T ss_dssp HHHHHHHHHTTCSEEEECCCCT
T ss_pred HHHHHHHHHHhhhhheeeeecC
Confidence 2456777888999999998753
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.02 E-value=0.072 Score=41.73 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=31.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++++|.| +|+||..++..|.+.|.+ |+++.+++.
T Consensus 23 p~~~vIiG-~G~ig~E~A~~l~~lG~~-Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMGSVYSRLGSK-VTVVEFQPQ 57 (122)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred CCeEEEEC-CCchHHHHHHHHHhhCcc-eeEEEeccc
Confidence 47999999 599999999999999999 999987654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.97 E-value=0.079 Score=44.03 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--CcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR--GVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~--~~D~ViHlAa 87 (478)
.+.+|+|.|+ |.+|...++.+...|...|++.++++... .........+++..+=.+.+...+... ++|+||.+++
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~-~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKL-KLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHH-HHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHH-HHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 4678999885 99999999988888876477777654321 111112222333322122233333332 6899999997
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.91 E-value=0.038 Score=45.06 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR 45 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~ 45 (478)
++++|+|||+|| |.+|..-++.|++.|.+ |++++..
T Consensus 10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~-VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCK-LTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEE-SHHHHHHHHHHGGGTCE-EEEEEEE
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 478899999997 99999999999999998 9998643
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.88 E-value=0.084 Score=41.08 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
..++++|.| +|+||-.++..|.+.|.+ |+++.+.+.
T Consensus 21 ~p~~i~IiG-~G~ig~E~A~~l~~~G~~-Vtiv~~~~~ 56 (119)
T d3lada2 21 VPGKLGVIG-AGVIGLELGSVWARLGAE-VTVLEAMDK 56 (119)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred CCCeEEEEC-CChHHHHHHHHHHHcCCc-eEEEEeecc
Confidence 347899999 599999999999999999 999987654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.83 E-value=0.065 Score=42.70 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
..++|+|.| +|++|-.++..|.+.|.+ |+.+.+.+.
T Consensus 34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~~-Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIG-GGYIGLEVAATAIKANMH-VTLLDTAAR 69 (133)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred cCCEEEEEC-CchHHHHHHHHHHhhCcc-eeeeeeccc
Confidence 457999999 599999999999999999 999987654
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.71 E-value=0.15 Score=40.87 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=56.8
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 10 EGKTFLVTGGL---GHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 10 ~~~~ILVTGat---GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
+.++|.|.|++ +-.|..+.+.|.+.|++ |+.+..+.. .-.+... ..++.++-+.+|.|+-+.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~-v~pVnP~~~-------~i~G~~~-------~~sl~dlp~~iD~v~i~v 82 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYD-VYPVNPKYE-------EVLGRKC-------YPSVLDIPDKIEVVDLFV 82 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTCS-------EETTEEC-------BSSGGGCSSCCSEEEECS
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCE-EEEECCccc-------ccCCCcc-------cccccccCccceEEEEEe
Confidence 35799999998 88999999999999998 988853321 1112222 122344445678877664
Q ss_pred cCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 87 SYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 87 a~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
. -..+..+++.|.+.|++.+++
T Consensus 83 p------------------~~~~~~~~~e~~~~g~k~v~~ 104 (139)
T d2d59a1 83 K------------------PKLTMEYVEQAIKKGAKVVWF 104 (139)
T ss_dssp C------------------HHHHHHHHHHHHHHTCSEEEE
T ss_pred C------------------HHHHHHHHHHHHHhCCCEEEE
Confidence 3 123456889999999976554
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.51 E-value=0.2 Score=38.68 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=54.6
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEcccC
Q 011770 12 KTFLVTGGL---GHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVASY 88 (478)
Q Consensus 12 ~~ILVTGat---GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa~ 88 (478)
|+|.|.|++ |-.|..+.+.|++.|++ |+.+..+.. .-.+...+ .++.++-+.+|.++-+..
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~-V~pVnP~~~-------~i~G~~~y-------~sl~~lp~~~D~vvi~vp- 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNPNYD-------EIEGLKCY-------RSVRELPKDVDVIVFVVP- 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTCS-------EETTEECB-------SSGGGSCTTCCEEEECSC-
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCE-EEEEccccc-------cccCcccc-------ccchhccccceEEEEEeC-
Confidence 689999988 78999999999999998 998743221 11222222 234444456798776542
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEE
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
-..+..+++.|.+.|++.+++
T Consensus 66 -----------------~~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 66 -----------------PKVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp -----------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred -----------------HHHHHHHHHHHHhcCCceEEe
Confidence 123446788899999976543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.37 E-value=0.056 Score=46.21 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCH---HHHHHHhc--CcCEEEE
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSK---IDVEKAAR--GVDCVFH 84 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~---~~l~~~l~--~~D~ViH 84 (478)
.+.+|+|.|+ |-+|...+..+...|..+|++.|.++... .....-+...+. |-.+. +.+.+... ++|++|.
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl--~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARL--AHAKAQGFEIAD-LSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHH--HHHHHTTCEEEE-TTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhh--HhhhhccccEEE-eCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 5679999985 99998888888788886588888765421 111223344432 32332 33444443 6899999
Q ss_pred cccC
Q 011770 85 VASY 88 (478)
Q Consensus 85 lAa~ 88 (478)
+.+.
T Consensus 101 ~vG~ 104 (195)
T d1kola2 101 AVGF 104 (195)
T ss_dssp CCCT
T ss_pred Cccc
Confidence 9884
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.25 E-value=0.059 Score=45.12 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=46.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCC---CeEEEEecCCCHHHHHHHhcCcCEEEEcc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINH---GVHCIQGDVVSKIDVEKAARGVDCVFHVA 86 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~---~v~~v~gDl~d~~~l~~~l~~~D~ViHlA 86 (478)
|||-|.| .|-+|+.+++.|++.|++ |.+.||++........... ...... ...+.+.+...+...+.++-+.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKANASAPFAGNLK-AFETMEAFAASLKKPRKALILV 76 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSTTGGGEE-ECSCHHHHHHHBCSSCEEEECC
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcCCccccccchh-hhhhhhHHHHhcccceEEEEee
Confidence 4699998 899999999999999999 9999987553211111110 011111 2335556666777777766665
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.93 E-value=0.067 Score=44.09 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCC-C-HHHHHHHhcCcCEEEEccc
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVV-S-KIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~-d-~~~l~~~l~~~D~ViHlAa 87 (478)
++.+|+|.|+ |-+|...++.+...|.+ |+++++++... .....-+.+.+...-. | .+.+.+..++.|.+|-+++
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~-v~~~~~~~~r~--~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 102 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLN-VVAVDIGDEKL--ELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 102 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCE-EEEECSCHHHH--HHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCe-EeccCCCHHHh--hhhhhcCcceecccccchhhhhcccccCCCceEEeecC
Confidence 5679999875 88999999988889998 99998765422 1112233444322222 2 2345555567777776664
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.72 E-value=0.08 Score=48.76 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
++|+|+|.| +|+-|...+..|.++|++ |.++.+++.
T Consensus 1 k~KKI~IIG-aG~sGL~aA~~L~k~G~~-V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVG-AGFSGAVIGRQLAEKGHQ-VHIIDQRDH 36 (314)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEEESSSS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 368999999 599999999999999998 999987765
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=91.69 E-value=0.06 Score=45.63 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
-++|.|.|| |.+|+.++..++..|++ |+++|+++.
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~-V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTP-ILMKDINEH 38 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCC-EEEECSSHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCe-EEEEECCHH
Confidence 468999996 99999999999999999 999998754
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=91.66 E-value=0.37 Score=39.89 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=44.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEec-----------CCCHHHHHHHhcCc
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGD-----------VVSKIDVEKAARGV 79 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gD-----------l~d~~~l~~~l~~~ 79 (478)
|++|.|-| .|-||+.+.+.|.+++.-+|+++.-..+..........+......+ +.-......+++++
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v 79 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA 79 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence 57899998 7999999999998876323666643333211011111111111111 11111345556789
Q ss_pred CEEEEcccC
Q 011770 80 DCVFHVASY 88 (478)
Q Consensus 80 D~ViHlAa~ 88 (478)
|+|+-|.+.
T Consensus 80 DvViEcTG~ 88 (171)
T d1cf2o1 80 DIVIDCTPE 88 (171)
T ss_dssp SEEEECCST
T ss_pred CEEEEccCC
Confidence 999999984
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=91.51 E-value=0.12 Score=40.00 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
++++|+|.| +|++|..++..|.+.|.+ |..+.+.+.
T Consensus 21 ~~~~vvVvG-gG~ig~E~A~~l~~~g~~-vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVG-GSKTAVEYGCFFNATGRR-TVMLVRTEP 56 (121)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSCT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcchh-heEeeccch
Confidence 468999999 599999999999999998 999988754
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.49 E-value=0.31 Score=38.10 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=51.2
Q ss_pred CCCCeEEEEcCC----------ChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-
Q 011770 9 IEGKTFLVTGGL----------GHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR- 77 (478)
Q Consensus 9 ~~~~~ILVTGat----------GfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~- 77 (478)
...++|||.|+. -|-+.+.+++|.+.|++ ++.+..++..-.-.....+ -+..+-...+.+.++++
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~-~iliN~NP~TVstd~d~aD---~lYfePlt~e~v~~Ii~~ 80 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR-VINVNSNPATIMTDPEMAD---ATYIEPIHWEVVRKIIEK 80 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE-EEEECSCTTCGGGCGGGSS---EEECSCCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe-EEEecCchHhhhcChhhcc---eeeeecCCHHHHHHHHHH
Confidence 345899999984 37899999999999999 8888655543211111112 22334456778888775
Q ss_pred -CcCEEEEccc
Q 011770 78 -GVDCVFHVAS 87 (478)
Q Consensus 78 -~~D~ViHlAa 87 (478)
++|.|+-..|
T Consensus 81 E~pd~il~~~G 91 (127)
T d1a9xa3 81 ERPDAVLPTMG 91 (127)
T ss_dssp HCCSEEECSSS
T ss_pred hCcCCeEEEee
Confidence 7999986654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.33 E-value=0.094 Score=44.00 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=31.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
++||+|.|| |..|-..+..|.+.|++.|+++++++.
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 579999995 999999999999999843999988654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.28 E-value=0.11 Score=45.65 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
..+||+|.|| |..|..++..|.++|++ |+++++++.
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~-v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGVD-VDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence 3578999995 99999999999999998 999998653
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.22 E-value=0.3 Score=40.37 Aligned_cols=116 Identities=13% Similarity=-0.024 Sum_probs=62.8
Q ss_pred CCeEEEEcC-CChhHHHHHHHHHHcC---CceEEEEecCCCCccccc--------ccCCCeEEEEecCCCHHHHHHHhcC
Q 011770 11 GKTFLVTGG-LGHVGSALCLELVRRG---AYQVRAFDLRTNSPWSHL--------LINHGVHCIQGDVVSKIDVEKAARG 78 (478)
Q Consensus 11 ~~~ILVTGa-tGfIG~~Lv~~L~~~G---~~~V~~l~r~~~~~~~~~--------~~~~~v~~v~gDl~d~~~l~~~l~~ 78 (478)
++||.|.|| +.+.+..++..+.... ..++..+|+.+....... ....+.......-+| ..+++++
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td---~~~al~g 77 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLD---RRRALDG 77 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESC---HHHHHTT
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCC---chhhcCC
Confidence 368999996 3344455555444331 123899987654210000 001122222222233 3557889
Q ss_pred cCEEEEcccCCCCchhhhchh------------------hhhHhhhHHHHHHHHHHHHcCCCeEEEEec
Q 011770 79 VDCVFHVASYGMSGKEMLQFG------------------RVDEVNINGTCHVIEACLEFGIQRLVYVST 129 (478)
Q Consensus 79 ~D~ViHlAa~~~~~~~~~~~~------------------~~~~vNv~gt~nll~aa~~~~v~r~V~~SS 129 (478)
+|+||.+|+.........+.. ....-|+.-.+.+.+...++..+-++..-|
T Consensus 78 aDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 78 ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 999999998643221111100 012357788888888888888766655543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=91.03 E-value=0.21 Score=42.09 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=31.1
Q ss_pred CCCeEEE-EcCCChhHHHHHHHHHHcCCceEEEEecCCCC
Q 011770 10 EGKTFLV-TGGLGHVGSALCLELVRRGAYQVRAFDLRTNS 48 (478)
Q Consensus 10 ~~~~ILV-TGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~ 48 (478)
++.+++| +||+|-+|...++.....|.+ |+++.++++.
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~-vI~~v~~~~~ 66 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFN-SISVIRDRPN 66 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCE-EEEEECCCTT
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCe-EEEEEecccc
Confidence 3456777 599999999999988889998 9998776553
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.02 E-value=0.3 Score=44.02 Aligned_cols=37 Identities=38% Similarity=0.406 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecC
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR 45 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~ 45 (478)
.++++++|+|-| .|-+|+++++.|.+.|.+ |++++-+
T Consensus 32 ~~L~gktvaIqG-fGnVG~~~A~~L~e~Gak-vv~vsD~ 68 (293)
T d1hwxa1 32 PGFGDKTFAVQG-FGNVGLHSMRYLHRFGAK-CVAVGES 68 (293)
T ss_dssp SSSTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEEET
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEEcc
Confidence 457889999999 699999999999999998 8888643
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=90.96 E-value=0.037 Score=42.35 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
...++|+|+|.| +|.-|.-++.+|.+.+-+ |+...|++.
T Consensus 28 ~~f~gK~VlVVG-~g~Sa~dia~~l~~~ak~-v~~~~~r~~ 66 (107)
T d2gv8a2 28 ELFVGESVLVVG-GASSANDLVRHLTPVAKH-PIYQSLLGG 66 (107)
T ss_dssp GGGTTCCEEEEC-SSHHHHHHHHHHTTTSCS-SEEEECTTC
T ss_pred hhcCCCeEEEEC-CCCCHHHHHHHHHHhcCE-EEEEEecCc
Confidence 346889999999 589999999999887766 776766655
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.85 E-value=0.12 Score=42.98 Aligned_cols=76 Identities=25% Similarity=0.234 Sum_probs=45.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeE-EEEe-cCCC-HHHHHHHh--cCcCEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVH-CIQG-DVVS-KIDVEKAA--RGVDCVF 83 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~-~v~g-Dl~d-~~~l~~~l--~~~D~Vi 83 (478)
.++.+|+|.|+ |-+|...+..+...|..+|+++++++... .....-+.. .+.. +-.+ .+...+.. .++|+||
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl--~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vi 103 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKF--EKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSL 103 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH--HHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHH--HHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceee
Confidence 35679999996 55887888888888876588888765422 111222332 2221 1111 23333333 3799999
Q ss_pred Eccc
Q 011770 84 HVAS 87 (478)
Q Consensus 84 HlAa 87 (478)
.+.+
T Consensus 104 d~~G 107 (175)
T d1cdoa2 104 ECVG 107 (175)
T ss_dssp ECSC
T ss_pred eecC
Confidence 9987
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=90.64 E-value=0.13 Score=40.29 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=31.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++++|.| +|+||-.++..|.+.|.+ |+++.+.+.
T Consensus 26 p~~vvIiG-gG~IG~E~A~~~~~~G~~-Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIG-GGIIGLEMGTVYSTLGSR-LDVVEMMDG 60 (125)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHhhcCCCE-EEEEEeecc
Confidence 47899999 499999999999999999 999987654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.51 E-value=0.13 Score=42.10 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc-eEEEEecCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAY-QVRAFDLRT 46 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~-~V~~l~r~~ 46 (478)
+|||+|.|| |++|-.++..|.+.+.+ +|+++++.+
T Consensus 2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 689999995 99999999999998853 388887655
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=90.50 E-value=0.12 Score=46.01 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=29.1
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|+|.| +|.+|..++.+|.++|.+ |+++++...
T Consensus 7 vvIIG-aGi~Gls~A~~La~~G~~-V~vlE~~~~ 38 (276)
T d1ryia1 7 AVVIG-GGIIGSAIAYYLAKENKN-TALFESGTM 38 (276)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSST
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 99999 599999999999999998 999998643
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.45 E-value=0.1 Score=44.24 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=27.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|||.|.| .||+|..++..| ++|++ |+++|.++.
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~-V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNE-VTIVDILPS 33 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSE-EEEECSCHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCc-EEEEECCHH
Confidence 5799997 899999998755 67998 999997654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=90.42 E-value=0.15 Score=41.71 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=53.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
.+.+|+++|.| =|.+|+-+++.|...|.+ |++..++|-.. .+...++.+.. .++++++..|++|-+.+
T Consensus 20 ~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~-V~V~E~DPi~a--lqA~mdGf~v~--------~~~~a~~~aDi~vTaTG 87 (163)
T d1v8ba1 20 LISGKIVVICG-YGDVGKGCASSMKGLGAR-VYITEIDPICA--IQAVMEGFNVV--------TLDEIVDKGDFFITCTG 87 (163)
T ss_dssp CCTTSEEEEEC-CSHHHHHHHHHHHHHTCE-EEEECSCHHHH--HHHHTTTCEEC--------CHHHHTTTCSEEEECCS
T ss_pred eecCCEEEEec-ccccchhHHHHHHhCCCE-EEEEecCchhh--HHHHhcCCccC--------chhHccccCcEEEEcCC
Confidence 46789999999 799999999999999998 99998765422 12234555543 35788889999998887
Q ss_pred C
Q 011770 88 Y 88 (478)
Q Consensus 88 ~ 88 (478)
-
T Consensus 88 n 88 (163)
T d1v8ba1 88 N 88 (163)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.41 E-value=0.057 Score=53.64 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc-----------------------ccccCCC--eEEEE
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS-----------------------HLLINHG--VHCIQ 63 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~-----------------------~~~~~~~--v~~v~ 63 (478)
+...+|+|.|+ |-+|+.+++.|...|...++++|...-.... .....+. ++++.
T Consensus 23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~ 101 (529)
T d1yova1 23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE 101 (529)
T ss_dssp HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc
Confidence 45679999996 7799999999999998779988764322100 0001122 23333
Q ss_pred ecCCCH-HHHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEecccee
Q 011770 64 GDVVSK-IDVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVV 133 (478)
Q Consensus 64 gDl~d~-~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~ 133 (478)
.+..+. +.-...+.++|+||.+.. |...-..+-+.|+++++ .+|+++|.+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~dvVv~~~~-----------------~~~~~~~l~~~c~~~~i-p~i~~~~~G~~ 154 (529)
T d1yova1 102 ESPENLLDNDPSFFCRFTVVVATQL-----------------PESTSLRLADVLWNSQI-PLLICRTYGLV 154 (529)
T ss_dssp SCHHHHHHSCGGGGGGCSEEEEESC-----------------CHHHHHHHHHHHHHHTC-CEEEEEEETTE
T ss_pred CCchhhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEeccCCE
Confidence 322111 001134567888886642 22333457889999997 68998887763
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.36 E-value=0.88 Score=34.99 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCC----------hhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc--
Q 011770 10 EGKTFLVTGGLG----------HVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-- 77 (478)
Q Consensus 10 ~~~~ILVTGatG----------fIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-- 77 (478)
..++|||.|+.. |-+.+.+++|.+.|++ ++.+..++..-.-.... ..-+..+-...+.+.++++
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~-~IliN~NPeTVstd~d~---aD~lYfeplt~e~v~~Ii~~E 78 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE-TIMVNCNPETVSTDYDT---SDRLYFEPVTLEDVLEIVRIE 78 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE-EEEECCCTTSSTTSTTS---SSEEECCCCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe-EEEEecChhhhhcChhh---cCceEEccCCHHHHHHHHHHh
Confidence 457999999744 7899999999999999 88886555422111111 1122233345677777664
Q ss_pred CcCEEEEccc
Q 011770 78 GVDCVFHVAS 87 (478)
Q Consensus 78 ~~D~ViHlAa 87 (478)
++|.|+-..|
T Consensus 79 ~p~~ii~~~G 88 (121)
T d1a9xa4 79 KPKGVIVQYG 88 (121)
T ss_dssp CCSEEECSSS
T ss_pred CCCEEEeehh
Confidence 7898875543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.33 E-value=0.15 Score=39.81 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=31.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++++|.| +|+||-.++..|.+.|.+ |+++.|++.
T Consensus 25 p~~~viiG-~G~iglE~A~~~~~~G~~-Vtvi~~~~~ 59 (123)
T d1dxla2 25 PKKLVVIG-AGYIGLEMGSVWGRIGSE-VTVVEFASE 59 (123)
T ss_dssp CSEEEESC-CSHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred CCeEEEEc-cchHHHHHHHHHHhcCCe-EEEEEEccc
Confidence 47899999 599999999999999998 999987754
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=0.19 Score=42.03 Aligned_cols=37 Identities=30% Similarity=0.526 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++|+|+|.| +|..|-.-+..|.++||+ |+++++.+.
T Consensus 41 ~~~k~V~IIG-aGPAGL~AA~~la~~G~~-Vtl~E~~~~ 77 (179)
T d1ps9a3 41 VQKKNLAVVG-AGPAGLAFAINAAARGHQ-VTLFDAHSE 77 (179)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEEESSSS
T ss_pred CCCcEEEEEC-ccHHHHHHHHHHHhhccc-eEEEeccCc
Confidence 4578999999 599999999999999999 999998654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=89.57 E-value=0.56 Score=41.09 Aligned_cols=36 Identities=42% Similarity=0.505 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecC
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLR 45 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~ 45 (478)
++++++|+|-| .|-+|+++++.|.+.|.+ |++++-.
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gak-vv~vsD~ 63 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAK-VIAVSDI 63 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCe-EEEeecc
Confidence 57889999998 799999999999999998 9887644
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.52 E-value=0.48 Score=36.95 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=57.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHH-cCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-CcCEEEEcccC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVR-RGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-GVDCVFHVASY 88 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-~~D~ViHlAa~ 88 (478)
+.+|+|.| +|-.|+.|++++.. .|++ ++++--..+... -..-.++..+. .+.+++..+ .++.++-+..
T Consensus 3 ~~~v~I~G-aG~~G~~l~~~l~~~~~~~-iv~fiDdd~~k~--G~~I~Gi~V~~-----~~~l~~~~~~~i~iai~~i~- 72 (126)
T d2dt5a2 3 KWGLCIVG-MGRLGSALADYPGFGESFE-LRGFFDVDPEKV--GRPVRGGVIEH-----VDLLPQRVPGRIEIALLTVP- 72 (126)
T ss_dssp CEEEEEEC-CSHHHHHHHHCSCCCSSEE-EEEEEESCTTTT--TCEETTEEEEE-----GGGHHHHSTTTCCEEEECSC-
T ss_pred CceEEEEc-CCHHHHHHHHhHhhcCCcE-EEEEEeCchHhc--CCEECCEEEec-----HHHHHHHHhhcccEEEEeCC-
Confidence 34899999 59999999998753 4677 777744444221 12234565542 234555554 4555554432
Q ss_pred CCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccce
Q 011770 89 GMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNV 132 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v 132 (478)
. ...+.+.+.|.++|++.+.-++....
T Consensus 73 ----~-------------~~~~~I~d~l~~~gIk~I~~f~~~~l 99 (126)
T d2dt5a2 73 ----R-------------EAAQKAADLLVAAGIKGILNFAPVVL 99 (126)
T ss_dssp ----H-------------HHHHHHHHHHHHHTCCEEEECSSSCC
T ss_pred ----H-------------HHHHHHHHHHHHcCCCEEeecCceee
Confidence 1 12245788899999987777665443
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=89.37 E-value=0.5 Score=38.90 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=58.7
Q ss_pred CCeEEEEcCCChhHHH-HHHHHHHcCC----ceEEEEecCCCCccc--c------cccCCCeEEEEecCCCHHHHHHHhc
Q 011770 11 GKTFLVTGGLGHVGSA-LCLELVRRGA----YQVRAFDLRTNSPWS--H------LLINHGVHCIQGDVVSKIDVEKAAR 77 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~-Lv~~L~~~G~----~~V~~l~r~~~~~~~--~------~~~~~~v~~v~gDl~d~~~l~~~l~ 77 (478)
..||.|.|| |.+|.. ++..|+..-. .+++.+|..+..... . .......+.... .+.+++++
T Consensus 3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal~ 76 (167)
T d1u8xx1 3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFT 76 (167)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHS
T ss_pred CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhccC
Confidence 357999998 545654 4455554311 249999987543210 0 001122333222 13567889
Q ss_pred CcCEEEEcccCCCCchhhhchhhhhH--------------------hhhHHHHHHHHHHHHcCCCeEEE
Q 011770 78 GVDCVFHVASYGMSGKEMLQFGRVDE--------------------VNINGTCHVIEACLEFGIQRLVY 126 (478)
Q Consensus 78 ~~D~ViHlAa~~~~~~~~~~~~~~~~--------------------vNv~gt~nll~aa~~~~v~r~V~ 126 (478)
++|+||.+|+.+..... ..++... -|+.-...+.+...+...+-++.
T Consensus 77 ~AD~Vvitag~~~~~g~--~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li 143 (167)
T d1u8xx1 77 DVDFVMAHIRVGKYAMR--ALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWML 143 (167)
T ss_dssp SCSEEEECCCTTHHHHH--HHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCEEEECCCcCCCCce--eHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEE
Confidence 99999999986432211 1222222 24555667777777777554443
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=88.76 E-value=0.19 Score=44.60 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=31.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
+|||+|+| +|.-|-.-+.+|.++|++ |+++++++.
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G~~-V~vlE~~~~ 35 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHGLN-VTVFEAEGK 35 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTSCE-EEEECSSSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCC-EEEEeCCCC
Confidence 47899999 599999999999999998 999987643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.73 E-value=0.16 Score=45.45 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=30.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.+|+|.|| |..|..++..|.+.|++ |++++++++
T Consensus 3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~~-v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGA-GPSGLLLGQLLHKAGID-NVILERQTP 36 (292)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHHTCC-EEEECSSCH
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence 37999995 89999999999999999 999998753
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=88.66 E-value=0.27 Score=41.97 Aligned_cols=69 Identities=26% Similarity=0.275 Sum_probs=47.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHhc-CcCEEEEcc
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAAR-GVDCVFHVA 86 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~-~~D~ViHlA 86 (478)
+++++||.|-| .|-+|+++++.|.+.|.+ |++.|.+..... .....+.+.+ +. ++++. +||+++-||
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gak-vvv~d~d~~~~~--~~~~~g~~~~-----~~---~~~~~~~~DI~iPcA 91 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQ-LLVADTDTERVA--HAVALGHTAV-----AL---EDVLSTPCDVFAPCA 91 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHHHHH--HHHHTTCEEC-----CG---GGGGGCCCSEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEecchHHHHH--HHHhhccccc-----Cc---cccccccceeeeccc
Confidence 57899999998 899999999999999998 998876533110 1111222222 22 22343 799999998
Q ss_pred cC
Q 011770 87 SY 88 (478)
Q Consensus 87 a~ 88 (478)
..
T Consensus 92 ~~ 93 (201)
T d1c1da1 92 MG 93 (201)
T ss_dssp CS
T ss_pred cc
Confidence 64
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=88.65 E-value=0.2 Score=40.53 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=29.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcC-CceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRG-AYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G-~~~V~~l~r~~~ 47 (478)
|||.+.|+ |-+|+++++.|++.| ++ |.+.+|+++
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~-i~v~~r~~~ 35 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYR-IYIANRGAE 35 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCE-EEEECSSHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCc-EEEEeCChh
Confidence 57999985 999999999999888 55 999988764
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=88.52 E-value=0.22 Score=40.66 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=39.1
Q ss_pred CCeEEEEcCCChhHHHHH-HHHHHcCCceEEEE-ecCCCCcccccccCCCeEEEEecCCCHHHHHHH--hcCcCEEEEcc
Q 011770 11 GKTFLVTGGLGHVGSALC-LELVRRGAYQVRAF-DLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKA--ARGVDCVFHVA 86 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv-~~L~~~G~~~V~~l-~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~--l~~~D~ViHlA 86 (478)
+.||.|.| +|.+|+.+. +.|.+...-+++++ +|++.+.........++.+... ..+++.+. +.++|+||.+.
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~---~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYA---GVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESS---HHHHHHHSGGGGGEEEEEECS
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCccccc---ceeeeeecccccccCEEEEcC
Confidence 46899999 899999654 55444333236666 4444322111122233443322 23444443 34789999875
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=87.90 E-value=0.2 Score=44.33 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=30.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|+|+|.|| |.-|-..+..|.++|++ |+++.+++.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~-V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTD-AVLLESSAR 34 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCC-EEEECSSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCC-EEEEecCCC
Confidence 57999995 99999999999999999 999987644
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=87.45 E-value=0.27 Score=44.22 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.+.|+|+|+| +|..|-..+..|.++|++ |+++++.+.
T Consensus 28 ~~pkkV~IIG-aG~aGLsaA~~L~~~G~~-V~vlE~~~~ 64 (370)
T d2iida1 28 SNPKHVVIVG-AGMAGLSAAYVLAGAGHQ-VTVLEASER 64 (370)
T ss_dssp SSCCEEEEEC-CBHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence 3567999999 599999999999999998 999987643
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=87.00 E-value=3.5 Score=38.31 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=73.8
Q ss_pred CCCCcCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCccc------ccccCCCeEEEEecCCCHHH---
Q 011770 1 MHLSENEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWS------HLLINHGVHCIQGDVVSKID--- 71 (478)
Q Consensus 1 m~~~~~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~------~~~~~~~v~~v~gDl~d~~~--- 71 (478)
|.+..+-.+.+-||+=.+ ++.-|..-.+.|.+.|.+ |+=+......... ......+-+.+..|+.+++.
T Consensus 1 ~~~~~~gPL~GirVld~~-~~~agp~~~~~Lad~GAe-VIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~ 78 (402)
T d1xk7a1 1 LPMPKFGPLAGLRVVFSG-IEIAGPFAGQMFAEWGAE-VIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREA 78 (402)
T ss_dssp CCCCCCSTTTTCEEEEEC-CSSHHHHHHHHHHHTTCE-EEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHH
T ss_pred CCCCCCcCCCCCEEEEeC-ChhHHHHHHHHHHHhCCe-EEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHH
Confidence 445554567888888776 556688888888999999 9988653321110 11123456788999998654
Q ss_pred HHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccceeeCC
Q 011770 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGG 136 (478)
Q Consensus 72 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~v~~g~ 136 (478)
+.++++.+|+||+.--.+....--.+ .+..++.+ +++||+|-+. ||.
T Consensus 79 ~~~Lv~~aDv~i~n~rpg~~~~lGl~---------------~~~L~~~n-P~lI~~sisg--fG~ 125 (402)
T d1xk7a1 79 FLKLMETTDIFIEASKGPAFARRGIT---------------DEVLWQHN-PKLVIAHLSG--FGQ 125 (402)
T ss_dssp HHHHHTTCSEEEEECSSSHHHHTTCC---------------HHHHHHHC-TTCEEEEEES--SCS
T ss_pred HHHHHhhcCCceeeeccccccccccc---------------ccchhhcc-ccccceeeec--ccC
Confidence 56778899999998643211111111 13344455 5899999875 553
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=87.00 E-value=0.99 Score=37.95 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=60.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceE--EEEecCCCCcccccccCCCeEEEEec-C------------------CCHH
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQV--RAFDLRTNSPWSHLLINHGVHCIQGD-V------------------VSKI 70 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V--~~l~r~~~~~~~~~~~~~~v~~v~gD-l------------------~d~~ 70 (478)
+||.|.| -|--|.+++..|.+.|.+.| ++++.... .....+.......+. . .+.+
T Consensus 1 ~kI~viG-vGGaG~n~v~~l~~~~~~~v~~iainTD~~---~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~~ 76 (194)
T d1w5fa1 1 LKIKVIG-VGGAGNNAINRMIEIGIHGVEFVAVNTDLQ---VLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEE 76 (194)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHHCCTTEEEEEEESCHH---HHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTHH
T ss_pred CeEEEEE-eCchHHHHHHHHHHcCCCceEEEEEcCCHH---HHhcCCcceEEecccccCCCcccccCchhhHhHHHHHHH
Confidence 3688999 58899999999999876434 44433211 011111222222221 1 1456
Q ss_pred HHHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC
Q 011770 71 DVEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 71 ~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v 121 (478)
.+.+.++++|.||-+|+.+...- ..++--+.+.|++.++
T Consensus 77 ~I~~~l~~~d~vfi~AGlGGgTG------------tgaapviA~~ake~g~ 115 (194)
T d1w5fa1 77 KIREVLQDTHMVFITAGFGGGTG------------TGASPVIAKIAKEMGI 115 (194)
T ss_dssp HHHHHTTTCSEEEEEEETTSSHH------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCeEEEEEecCCCcc------------cchHHHHHHHHHHcCC
Confidence 78888999999999999765432 3455568999999986
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.96 E-value=0.23 Score=45.08 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|..|+|.| +|+-|..+++.|.+.|++ |.++.+++.
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g~~-V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLNKK-VLVIEKRNH 35 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGTCC-EEEECSSSS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCCCc-EEEEECCCC
Confidence 45799999 599999999999999999 999987755
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.29 E-value=0.56 Score=40.50 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 9 IEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 9 ~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
...++|+|.| +|+.|-..+.+|.++|++ |+++++.+.
T Consensus 47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G~~-v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVG-AGPSGSEAARVLMESGYT-VHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred cCCceEEEEc-ccHHHHHHHHHHHHhccc-eeeEeeccc
Confidence 4568999999 599999999999999999 999987654
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=85.87 E-value=1.2 Score=37.89 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecC-------------------CCHHH
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDV-------------------VSKID 71 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl-------------------~d~~~ 71 (478)
+.+|.|.| -|--|.+++..|.+.|.+.|-.+..+..... ....+.......+.- .+.+.
T Consensus 15 ~~ki~ViG-vGGaG~n~v~~l~~~~~~~v~~iainTD~~~-L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~~~ 92 (209)
T d2vapa1 15 KAKITVVG-CGGAGNNTITRLKMEGIEGAKTVAINTDAQQ-LIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEE 92 (209)
T ss_dssp CCCEEEEE-EHHHHHHHHHHHHHHTCTTEEEEEEESBHHH-HHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHTHHH
T ss_pred CCcEEEEE-eCChHHHHHHHHHHcCCCceEEEEEeCCHHH-HhcCCcchhcccccccccccccccchHHHHHHHHHHHHH
Confidence 46899999 5889999999999988653543332222110 001111122222211 23567
Q ss_pred HHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCC
Q 011770 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQ 122 (478)
Q Consensus 72 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~ 122 (478)
+.+.++++|.||-+|+.+.... ..++--+.+.|++.++.
T Consensus 93 I~~~l~~~d~vfi~AGlGGGTG------------sgaapvia~~ake~g~l 131 (209)
T d2vapa1 93 IKAAIQDSDMVFITCGLGGGTG------------TGSAPVVAEISKKIGAL 131 (209)
T ss_dssp HHHHHTTCSEEEEEEETTSSHH------------HHHHHHHHHHHHHTTCE
T ss_pred HHHhccCCCEEEEEEeCCCCcc------------ccHHHHHHHHHHHcCCc
Confidence 8888999999999999765332 23455688999998863
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.57 E-value=0.4 Score=39.38 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=28.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT 46 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~ 46 (478)
+++|+|.| +|++|-.++..|.+.|.+ |.++.+.+
T Consensus 3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~-v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVG-TGLAGVEVAFGLRASGWE-GNIRLVGD 36 (185)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCC-SEEEEECS
T ss_pred CCCEEEEC-CcHHHHHHHHHHHHcCCc-eEEEEecC
Confidence 57899999 599999999999999987 66665544
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=85.48 E-value=0.4 Score=38.78 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~~ 47 (478)
||+|.|.|+||-||....+-+.+. .++ |.++.-...
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~-v~~Lsa~~N 38 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFR-VVALVAGKN 38 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEE-EEEEEESSC
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcE-EEEEEecCc
Confidence 578999999999999999988775 355 888865433
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=85.30 E-value=0.39 Score=40.28 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=27.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~ 47 (478)
|||+|.|| |++|-.++..|.+.+ .+ |+.+++.+.
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~-V~v~~~~~~ 36 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAE-IQWYEKGDF 36 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSE-EEEEESSSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCe-EEEEeCCCc
Confidence 58999995 999999999998874 45 888877543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.06 E-value=0.4 Score=40.74 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=29.3
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|+|.| +|.-|...+..|.++|++ |.++.+++.
T Consensus 8 viViG-aG~~Gl~~A~~La~~G~~-V~vlE~~~~ 39 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDGKK-VLHIDKQDH 39 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCC-EEEEcCCCC
Confidence 89999 699999999999999998 999998754
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.57 E-value=0.59 Score=40.85 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=29.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
++|+|.|| |..|..++..|.+.|.+.|+++.+++.
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 57999995 999999999999999633999988654
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.33 E-value=2 Score=34.26 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=25.9
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
||.+.| .|.+|+.+++.|++.|+. |+ .+|..+
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~-~~-~~~~~~ 33 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPT-LV-WNRTFE 33 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCE-EE-ECSSTH
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCE-EE-EeCCHH
Confidence 688999 699999999999998876 64 455544
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=84.23 E-value=0.47 Score=41.96 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=29.0
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 14 FLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 14 ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
|+|.| +|..|..++.+|.++|++ |+++++...
T Consensus 6 vvIIG-aGi~Gls~A~~La~~G~~-V~viE~~~~ 37 (281)
T d2gf3a1 6 VIVVG-AGSMGMAAGYQLAKQGVK-TLLVDAFDP 37 (281)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSCS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 88999 599999999999999999 999998644
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=84.10 E-value=0.66 Score=40.24 Aligned_cols=73 Identities=25% Similarity=0.299 Sum_probs=48.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCCcccccccCCCeEEEEecCCCHHHHHHHh-cCcCEEEE
Q 011770 6 NEGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAA-RGVDCVFH 84 (478)
Q Consensus 6 ~~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l-~~~D~ViH 84 (478)
+.++++++|+|-| .|-+|+++++.|.+.|.+ |++.|.+...-. ......+.+. .+.++ ++ .+||+++=
T Consensus 34 ~~~l~g~~v~IqG-~GnVG~~~a~~L~~~Gak-vv~~d~~~~~~~-~~~~~~g~~~-----~~~~~---~~~~~cDIl~P 102 (230)
T d1leha1 34 SDSLEGLAVSVQG-LGNVAKALCKKLNTEGAK-LVVTDVNKAAVS-AAVAEEGADA-----VAPNA---IYGVTCDIFAP 102 (230)
T ss_dssp SCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHHHHH-HHHHHHCCEE-----CCGGG---TTTCCCSEEEE
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEeecccHHHHH-HHHHhcCCcc-----cCCcc---cccccccEecc
Confidence 3458899999999 799999999999999999 998876432110 0111112222 12222 22 37999999
Q ss_pred cccCC
Q 011770 85 VASYG 89 (478)
Q Consensus 85 lAa~~ 89 (478)
||-..
T Consensus 103 cA~~~ 107 (230)
T d1leha1 103 CALGA 107 (230)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 99743
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=83.95 E-value=0.62 Score=35.49 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=28.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHH---cCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVR---RGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~---~G~~~V~~l~r~~~ 47 (478)
.++++|.|| |++|-.++..|.+ .|.+ |+.+.+.+.
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~-Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQ-VDLAYRGDM 55 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCE-EEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccc-cceeccccc
Confidence 479999995 9999999987654 3777 999987654
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=83.80 E-value=0.48 Score=38.22 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc--CCceEEEEecCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR--GAYQVRAFDLRT 46 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~--G~~~V~~l~r~~ 46 (478)
+|+|.|.|+||-||....+-+.+. .++ |.++.-..
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~-v~~lsa~~ 38 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQ-VIALTANR 38 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEE-EEEEEESS
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcE-EEEEEeCC
Confidence 589999999999999999888764 456 88886543
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.50 E-value=0.74 Score=36.91 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=29.9
Q ss_pred CCCeEEEE-cCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 10 EGKTFLVT-GGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVT-GatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
.++.++|. .|.||+|..+++.|.+.|.+ |+.+.+.+.
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~-Vtlv~~~~~ 75 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAGHE-VTIVSGVHL 75 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCE-EEEEESSCT
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcCCe-EEEEecCCc
Confidence 34566665 35699999999999999999 999987643
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.48 E-value=0.59 Score=36.86 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=28.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHH----HcCCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELV----RRGAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~----~~G~~~V~~l~r~~~ 47 (478)
.++++|.|| ||+|-.++..|. +.|.+ |+.+.+.+.
T Consensus 37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~-Vt~i~~~~~ 75 (137)
T d1m6ia2 37 VKSITIIGG-GFLGSELACALGRKARALGTE-VIQLFPEKG 75 (137)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHHhcCCE-EEEeccccc
Confidence 468999985 999999999885 35888 999876544
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.41 E-value=1.2 Score=40.00 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=23.6
Q ss_pred CCChhHHHHHHHHHHcCCceEEEEecCC
Q 011770 19 GLGHVGSALCLELVRRGAYQVRAFDLRT 46 (478)
Q Consensus 19 atGfIG~~Lv~~L~~~G~~~V~~l~r~~ 46 (478)
.||-.|.+|++++..+|++ |+.+.+..
T Consensus 44 SSGk~G~alA~~~~~~Ga~-V~li~g~~ 70 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAGYG-VLFLYRAR 70 (290)
T ss_dssp CCCHHHHHHHHHHHHTTCE-EEEEEETT
T ss_pred CchHHHHHHHHHHHHcCCE-EEEEecCC
Confidence 3599999999999999999 99997653
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.39 E-value=0.48 Score=36.27 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=27.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc---CCceEEEEecCCC
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRR---GAYQVRAFDLRTN 47 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~---G~~~V~~l~r~~~ 47 (478)
.++++|.|| |++|-.++..|.+. |.+ |+++.+.+.
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~-Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQ-VTLCYRGEM 57 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCE-EEEEESSSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcE-EEEEeccch
Confidence 478999996 99999999776654 456 999987654
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.27 E-value=2.5 Score=36.58 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEEec
Q 011770 8 GIEGKTFLVTGGLGHVGSALCLELVRR-GAYQVRAFDL 44 (478)
Q Consensus 8 ~~~~~~ILVTGatGfIG~~Lv~~L~~~-G~~~V~~l~r 44 (478)
++++++|+|-| .|-+|+++++.|.+. |.. |++++-
T Consensus 29 ~l~g~~v~IqG-fGnVG~~~a~~L~~~~G~k-vv~vsD 64 (239)
T d1gtma1 29 TLKGKTIAIQG-YGNAGYYLAKIMSEDFGMK-VVAVSD 64 (239)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCCE-EEEEEC
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCcc-eeeccc
Confidence 47889999999 699999999999864 887 777753
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=83.20 E-value=0.52 Score=42.19 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=28.8
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRT 46 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~ 46 (478)
+|+|.|| |.+|...+.+|.++|..+|++++++.
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 6999994 99999999999999963399999874
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=82.45 E-value=0.98 Score=36.54 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=53.0
Q ss_pred CCeEEEEcCCChhHHH-HHHHHHHc-CCceEEEEe-cCCCCcccccccCCCeEEEEecCCCHHHHHHHhcCcCEEEEccc
Q 011770 11 GKTFLVTGGLGHVGSA-LCLELVRR-GAYQVRAFD-LRTNSPWSHLLINHGVHCIQGDVVSKIDVEKAARGVDCVFHVAS 87 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~-Lv~~L~~~-G~~~V~~l~-r~~~~~~~~~~~~~~v~~v~gDl~d~~~l~~~l~~~D~ViHlAa 87 (478)
+++|.|.| +|.+|+. ....|.+. +.+ ++++. +++... .......++. ..+ +++++.+++|+|+-+..
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~~-i~~v~d~~~~~~-~~~~~~~~~~-----~~~--~~~~l~~~~D~V~I~tp 70 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAASDWT-LQGAWSPTRAKA-LPICESWRIP-----YAD--SLSSLAASCDAVFVHSS 70 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSSEE-EEEEECSSCTTH-HHHHHHHTCC-----BCS--SHHHHHTTCSEEEECSC
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhCCCcE-EEEEEechhHhh-hhhhhccccc-----ccc--cchhhhhhccccccccc
Confidence 36899999 6999975 56666554 555 66554 443321 1111111222 222 24445678999886653
Q ss_pred CCCCchhh-----hch-----hhhhHhhhHHHHHHHHHHHHcCC
Q 011770 88 YGMSGKEM-----LQF-----GRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 88 ~~~~~~~~-----~~~-----~~~~~vNv~gt~nll~aa~~~~v 121 (478)
.. ..... ..- +.-...|..-...++++|++.|+
T Consensus 71 ~~-~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~ 113 (164)
T d1tlta1 71 TA-SHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKL 113 (164)
T ss_dssp TT-HHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred ch-hccccccccccccceeeccccccCCHHHHHHHHHHHHHcCC
Confidence 21 11000 000 11123567777888888888875
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=82.29 E-value=0.36 Score=39.93 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=26.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEEec
Q 011770 11 GKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDL 44 (478)
Q Consensus 11 ~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r 44 (478)
+.+|+|.| +|++|-.++..|.+.|.+ |.++.+
T Consensus 3 ~a~VvIIG-gG~~G~e~A~~l~~~g~~-v~i~~~ 34 (183)
T d1d7ya1 3 KAPVVVLG-AGLASVSFVAELRQAGYQ-GLITVV 34 (183)
T ss_dssp CSSEEEEC-CSHHHHHHHHHHHHHTCC-SCEEEE
T ss_pred CCCEEEEC-ccHHHHHHHHHHHhcCCc-eEEEEE
Confidence 45699999 599999999999999976 554443
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=82.22 E-value=2.1 Score=36.93 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHH-cCCceEEEEecC
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVR-RGAYQVRAFDLR 45 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~-~G~~~V~~l~r~ 45 (478)
.++++++|.|-| .|-+|+++++.|.+ .|.. |++++-+
T Consensus 27 ~~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~-vv~vsd~ 64 (234)
T d1b26a1 27 IDPKKATVAVQG-FGNVGQFAALLISQELGSK-VVAVSDS 64 (234)
T ss_dssp CCTTTCEEEEEC-CSHHHHHHHHHHHHHHCCE-EEEEEET
T ss_pred CCcCCCEEEEEC-CCHHHHHHHHHHHHhcCCc-eEEeecC
Confidence 457889999998 89999999999975 5998 8877643
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=82.07 E-value=0.63 Score=42.51 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcC--CceEEEEecCCC
Q 011770 10 EGKTFLVTGGLGHVGSALCLELVRRG--AYQVRAFDLRTN 47 (478)
Q Consensus 10 ~~~~ILVTGatGfIG~~Lv~~L~~~G--~~~V~~l~r~~~ 47 (478)
.+|+|+|+| +|.-|-..+..|+++| ++ |+++.+++.
T Consensus 3 ~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~-v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIG-AGPSGLVTAKALLAEKAFDQ-VTLFERRGS 40 (335)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTCCSE-EEEECSSSS
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHhCCCCC-EEEEECCCC
Confidence 357999999 5999999999998876 46 999998754
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.07 E-value=0.58 Score=37.74 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.5
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCC
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTN 47 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~ 47 (478)
||+|.|| |++|-.++..|. ++.+ |+++++.+.
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~-Vtvv~~~~~ 33 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYE-VTVIDKEPV 33 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSE-EEEECSSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCC-EEEEecccc
Confidence 7999995 999999999985 5777 999987543
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=81.69 E-value=0.084 Score=43.60 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=40.5
Q ss_pred CeEEEEcCCChhHHHHHH-HHHHc-----CCceEEEEecCCCCccccc-----ccCCCeEEEEecCCCHHHHHHHhcCcC
Q 011770 12 KTFLVTGGLGHVGSALCL-ELVRR-----GAYQVRAFDLRTNSPWSHL-----LINHGVHCIQGDVVSKIDVEKAARGVD 80 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~-~L~~~-----G~~~V~~l~r~~~~~~~~~-----~~~~~v~~v~gDl~d~~~l~~~l~~~D 80 (478)
|||.|.|| |-+|...+- .|++. +.+ +..+|..+....... .......... + .+..++++++|
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~e-l~L~Did~~k~~~~~d~~~~~~~~~~~~~~---t--~~~~~~l~~aD 73 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDE-VIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---S--DTFEGAVVDAK 73 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCE-EEEECSCHHHHHHHHHHHHHHHTTSSEEEE---C--SSHHHHHTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccE-EEEEecCcHHHHHHHHHHHhhhccCceEEE---e--cCcccccCCCC
Confidence 57999997 556765553 33322 234 999998654221100 0112222222 1 12456789999
Q ss_pred EEEEcccCC
Q 011770 81 CVFHVASYG 89 (478)
Q Consensus 81 ~ViHlAa~~ 89 (478)
+||.+|+..
T Consensus 74 vVVita~~~ 82 (162)
T d1up7a1 74 YVIFQFRPG 82 (162)
T ss_dssp EEEECCCTT
T ss_pred EEEEecccC
Confidence 999999863
|
| >d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Hypothetical protein YfdW species: Escherichia coli [TaxId: 562]
Probab=81.42 E-value=4 Score=38.06 Aligned_cols=107 Identities=19% Similarity=0.122 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEecCCCC-cccc-------------cccCCCeEEEEecCCCHHH-
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDLRTNS-PWSH-------------LLINHGVHCIQGDVVSKID- 71 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r~~~~-~~~~-------------~~~~~~v~~v~gDl~d~~~- 71 (478)
..+.+-|||=.+ +..-|-...+.|.+.|.+ |+-+.+.... ..+. .....+-+.+..|+.+++.
T Consensus 3 ~PL~GirVld~~-~~~agp~~~~~Lad~GAe-VIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~ 80 (417)
T d1q7ea_ 3 TPLQGIKVLDFT-GVQSGPSCTQMLAWFGAD-VIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGK 80 (417)
T ss_dssp CTTTTCEEEECC-CTTHHHHHHHHHHHTTCE-EEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHH
T ss_pred CCCCCCEEEEcC-ChhHHHHHHHHHHHhCCe-EEEECCCCCCCchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHH
Confidence 346777777666 456677777888889999 9988753211 1100 1112356788999998765
Q ss_pred --HHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCCCeEEEEeccc
Q 011770 72 --VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGIQRLVYVSTYN 131 (478)
Q Consensus 72 --l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v~r~V~~SS~~ 131 (478)
+.++++++|+||+.--.+....--.+ .+..++.+ +++||+|-+.
T Consensus 81 ~~~~~Li~~aDv~i~n~~pg~~~rlGl~---------------~~~l~~~n-P~lI~~sisg 126 (417)
T d1q7ea_ 81 EVMEKLIREADILVENFHPGAIDHMGFT---------------WEHIQEIN-PRLIFGSIKG 126 (417)
T ss_dssp HHHHHHHHHCSEEEECCCC-------CC---------------HHHHHHHC-TTCEEEEEES
T ss_pred HHHHHHHhcCcccEeccCCCcHhhcCCC---------------HHHHHhhC-CCEEEEeeec
Confidence 45777899999998653322111111 12334445 5899999875
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.26 E-value=2.6 Score=35.34 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=59.0
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCce--EEEEecCCCCcccccccCCCeEEEEec-----------C--------CCHHH
Q 011770 13 TFLVTGGLGHVGSALCLELVRRGAYQ--VRAFDLRTNSPWSHLLINHGVHCIQGD-----------V--------VSKID 71 (478)
Q Consensus 13 ~ILVTGatGfIG~~Lv~~L~~~G~~~--V~~l~r~~~~~~~~~~~~~~v~~v~gD-----------l--------~d~~~ 71 (478)
+|.|.| -|--|.+++..|.+.|.+. .++++.+... ....+....+..++ . .+.+.
T Consensus 3 ~IkViG-vGGaG~n~v~~~~~~~~~~v~~iainTD~~~---L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~~~ 78 (198)
T d1ofua1 3 VIKVIG-VGGGGGNAVNHMAKNNVEGVEFICANTDAQA---LKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRER 78 (198)
T ss_dssp CEEEEE-EHHHHHHHHHHHHHTTCCSEEEEEEESBTGG---GSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTHHH
T ss_pred eEEEEE-ECchHHHHHHHHHHcCCCCeEEEEEeCcHHH---HhcCCccceeccccccccCCCCCCChHHHHHHHHHHHHH
Confidence 477888 5888999999999987643 4444433221 01111122222221 1 14667
Q ss_pred HHHHhcCcCEEEEcccCCCCchhhhchhhhhHhhhHHHHHHHHHHHHcCC
Q 011770 72 VEKAARGVDCVFHVASYGMSGKEMLQFGRVDEVNINGTCHVIEACLEFGI 121 (478)
Q Consensus 72 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~vNv~gt~nll~aa~~~~v 121 (478)
+.+.++++|.||-+|+.+.... ..++--+.+.|++.++
T Consensus 79 I~~~l~~~d~vfi~AGlGGGTG------------tgaapviA~~ake~g~ 116 (198)
T d1ofua1 79 ISEVLEGADMVFITTGMGGGTG------------TGAAPIIAEVAKEMGI 116 (198)
T ss_dssp HHHHHTTCSEEEEEEETTSSHH------------HHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCeEEEEecCCCCcc------------ccHHHHHHHHHHHcCC
Confidence 8888999999999999764332 2445568999999986
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.93 E-value=0.19 Score=43.40 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=23.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc
Q 011770 12 KTFLVTGGLGHVGSALCLELVRRGAY 37 (478)
Q Consensus 12 ~~ILVTGatGfIG~~Lv~~L~~~G~~ 37 (478)
|||+|.| +|.+|...+.+|.++|++
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~ 25 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHS 25 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCC
Confidence 5799999 599999999999999986
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=80.73 E-value=0.79 Score=40.39 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=31.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEEec
Q 011770 7 EGIEGKTFLVTGGLGHVGSALCLELVRRGAYQVRAFDL 44 (478)
Q Consensus 7 ~~~~~~~ILVTGatGfIG~~Lv~~L~~~G~~~V~~l~r 44 (478)
.+++++||.|-| .|-+|+++++.|.+.|.+ |++++-
T Consensus 32 ~~l~g~~v~IQG-fGnVG~~~a~~L~e~Gak-vvavsD 67 (255)
T d1bgva1 32 DTLVGKTVALAG-FGNVAWGAAKKLAELGAK-AVTLSG 67 (255)
T ss_dssp CCSTTCEEEECC-SSHHHHHHHHHHHHHTCE-EEEEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCe-EEEEec
Confidence 457889999999 799999999999999998 887753
|