Citrus Sinensis ID: 011844

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
cccccHHHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEEEccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccEEEEEcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccEHHEEEEEcccccccccccccccEEEEEcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MGGGFRVLHLVRPFlaflpevqsadrkvpfrEKVIYTVISLFIFLVcsqlplygihsttgadpfYWMRVILASNrgtvmelgiTPIVTSGLVMQLLAGSkiievdnnvrEDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLqkgyglgsGISLFIATNICENIIwkafspttinsgrgaefEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVvlpvrsknargqqgsypiklfytsnmPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKwkeseysggqyvpvggIAYYitapssladmaanPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEqqmvmpghreANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
MGGGFRVLHLVRPFLAFlpevqsadrkvpFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVrsknargqqgsYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
***GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVS***************************KELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE**********
***GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEV*****EDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPV**********SYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSAR******K**QMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFE*FE*****E******
MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
**GGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE*G****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query476 2.2.26 [Sep-21-2011]
Q54XK2475 Protein transport protein yes no 0.989 0.991 0.720 0.0
Q90ZM2476 Protein transport protein yes no 0.983 0.983 0.698 0.0
Q7T278476 Protein transport protein N/A no 0.987 0.987 0.695 0.0
Q7T277476 Protein transport protein N/A no 0.987 0.987 0.695 0.0
Q8AY36476 Protein transport protein N/A no 0.987 0.987 0.695 0.0
Q8AY35476 Protein transport protein N/A no 0.987 0.987 0.695 0.0
Q8AY32476 Protein transport protein N/A no 0.987 0.987 0.695 0.0
Q9JLR1476 Protein transport protein yes no 0.983 0.983 0.703 0.0
Q9H9S3476 Protein transport protein yes no 0.983 0.983 0.703 0.0
Q2KHX4476 Protein transport protein yes no 0.983 0.983 0.703 0.0
>sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1 Back     alignment and function desciption
 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/472 (72%), Positives = 404/472 (85%), Gaps = 1/472 (0%)

Query: 4   GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
           GFR L +V+PF + +PEV   DRK+PFREKV++T I LFIFLVCSQ+PLYGI ST  +DP
Sbjct: 2   GFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIFLVCSQIPLYGIRSTDSSDP 61

Query: 64  FYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLG 123
           FYW +VI+ASNRGT+MELGI+PIVTSG+VMQLLAG+K+IE+D +V+ DR L + AQKL G
Sbjct: 62  FYWAKVIMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEIDQSVKADRDLFSAAQKLFG 121

Query: 124 IIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGIS 183
           ++I +G+ VAY+ SG YG    LG GN  LI++QL FAGIIV+ LDELLQKGYG+GSGIS
Sbjct: 122 MLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLDELLQKGYGIGSGIS 181

Query: 184 LFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP 243
           LFIATNICE I+WK FSPTT++ G+G EFEGAVIALFHLL+TRNDKVRAL+EAFYRQNLP
Sbjct: 182 LFIATNICETIVWKTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFYRQNLP 241

Query: 244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSN 303
           N+TNLLATVLIF++VIYFQGFRV LPV+S    GQQG+YPIKLFYTSN+PIILQSALVSN
Sbjct: 242 NITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQSALVSN 301

Query: 304 LYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHA 363
           LYFISQL+YRR+  N  VNL G W+ SEYS  Q +PV G+ YYI++P++++ + A+PFHA
Sbjct: 302 LYFISQLLYRRFPDNILVNLFGAWRTSEYS-QQMIPVSGLTYYISSPNNMSAVLADPFHA 360

Query: 364 LFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAA 423
           LFY+ FML++CALFSK WIEVSGSSARDVAKQLK+QQM M GHR+ ++ KELNRYIPTAA
Sbjct: 361 LFYITFMLTSCALFSKVWIEVSGSSARDVAKQLKDQQMTMKGHRDTSVIKELNRYIPTAA 420

Query: 424 AFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 475
           AFGG+CIGALTV+ADFMGAIGSGTGILLAVTIIYQYFETF KE+    G  G
Sbjct: 421 AFGGLCIGALTVVADFMGAIGSGTGILLAVTIIYQYFETFVKEQQELSGGIG 472
Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.
Dictyostelium discoideum (taxid: 44689)
>sp|Q90ZM2|S61A1_DANRE Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3 Back     alignment and function description
>sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q7T277|SC61A_DISMA Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q8AY35|SC61A_NOTAN Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3 Back     alignment and function description
>sp|Q9H9S3|S61A2_HUMAN Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3 Back     alignment and function description
>sp|Q2KHX4|S61A2_BOVIN Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query476
225461724476 PREDICTED: protein transport protein Sec 1.0 1.0 0.976 0.0
224114762476 Sec61 transport protein [Populus trichoc 1.0 1.0 0.966 0.0
224117452476 Sec61 transport protein [Populus trichoc 1.0 1.0 0.964 0.0
356543211476 PREDICTED: protein transport protein Sec 1.0 1.0 0.968 0.0
356544102476 PREDICTED: protein transport protein Sec 1.0 1.0 0.968 0.0
359807371476 uncharacterized protein LOC100798372 [Gl 1.0 1.0 0.966 0.0
6581004476 putative integral membrane protein [Phas 1.0 1.0 0.966 0.0
356517046476 PREDICTED: protein transport protein Sec 1.0 1.0 0.964 0.0
255645765476 unknown [Glycine max] 1.0 1.0 0.962 0.0
255562508476 preprotein translocase secy subunit, put 1.0 1.0 0.953 0.0
>gi|225461724|ref|XP_002285514.1| PREDICTED: protein transport protein Sec61 subunit alpha [Vitis vinifera] Back     alignment and taxonomy information
 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/476 (97%), Positives = 474/476 (99%)

Query: 1   MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
           MGGGFRVLHLVRPFL+FLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
Sbjct: 1   MGGGFRVLHLVRPFLSFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60

Query: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
           ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
Sbjct: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120

Query: 121 LLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180
           LLGI+IA+GEAVAYVLSGMYGSV+QLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS
Sbjct: 121 LLGILIAVGEAVAYVLSGMYGSVSQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180

Query: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQ 240
           GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITR DKVRALREAFYRQ
Sbjct: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQ 240

Query: 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300
           NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL
Sbjct: 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300

Query: 301 VSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANP 360
           VSNLYFISQL+YRRYSGNF VNLLGKWKESEYSGGQY+PVGG+AYYITAPSSLADMAANP
Sbjct: 301 VSNLYFISQLLYRRYSGNFLVNLLGKWKESEYSGGQYIPVGGLAYYITAPSSLADMAANP 360

Query: 361 FHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIP 420
           FHALFYL+FML+ACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIP
Sbjct: 361 FHALFYLIFMLAACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIP 420

Query: 421 TAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 476
           TAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
Sbjct: 421 TAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224114762|ref|XP_002316850.1| Sec61 transport protein [Populus trichocarpa] gi|118487035|gb|ABK95348.1| unknown [Populus trichocarpa] gi|222859915|gb|EEE97462.1| Sec61 transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117452|ref|XP_002331716.1| Sec61 transport protein [Populus trichocarpa] gi|222874322|gb|EEF11453.1| Sec61 transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356543211|ref|XP_003540056.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356544102|ref|XP_003540494.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|359807371|ref|NP_001241126.1| uncharacterized protein LOC100798372 [Glycine max] gi|255637958|gb|ACU19295.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|6581004|gb|AAF18411.1|AF190652_1 putative integral membrane protein [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|356517046|ref|XP_003527201.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|255645765|gb|ACU23375.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255562508|ref|XP_002522260.1| preprotein translocase secy subunit, putative [Ricinus communis] gi|223538513|gb|EEF40118.1| preprotein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query476
TAIR|locus:2040909475 AT2G34250 "AT2G34250" [Arabido 0.997 1.0 0.932 2.1e-235
TAIR|locus:2029894475 AT1G29310 "AT1G29310" [Arabido 0.997 1.0 0.930 4.4e-235
TAIR|locus:2037483475 AT1G78720 "AT1G78720" [Arabido 0.995 0.997 0.905 7.5e-231
DICTYBASE|DDB_G0278885475 sec61a "protein transport prot 0.989 0.991 0.720 3.1e-186
UNIPROTKB|Q7T277476 sec61a "Protein transport prot 0.985 0.985 0.698 1.3e-178
UNIPROTKB|Q7T278476 sec61a "Protein transport prot 0.985 0.985 0.698 1.3e-178
ZFIN|ZDB-GENE-020418-2476 sec61a1 "Sec61 alpha 1 subunit 0.981 0.981 0.701 1.3e-178
UNIPROTKB|Q2KHX4476 SEC61A2 "Protein transport pro 0.983 0.983 0.703 1.7e-178
UNIPROTKB|Q9H9S3476 SEC61A2 "Protein transport pro 0.983 0.983 0.703 1.7e-178
UNIPROTKB|F2Z5D0476 SEC61A2 "Uncharacterized prote 0.983 0.983 0.703 1.7e-178
TAIR|locus:2040909 AT2G34250 "AT2G34250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2270 (804.1 bits), Expect = 2.1e-235, P = 2.1e-235
 Identities = 444/476 (93%), Positives = 467/476 (98%)

Query:     1 MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
             MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
Sbjct:     1 MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60

Query:    61 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
             ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
Sbjct:    61 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120

Query:   121 LLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180
             LLGI+IAIGEAVAYVLSGMYG V QLGVGNAILII+QL FAGIIVICLDELLQKGYGLGS
Sbjct:   121 LLGILIAIGEAVAYVLSGMYGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGS 180

Query:   181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQ 240
             GISLFIATNICE+IIWKAFSPTTIN+GRGAEFEGAVIALFH+LIT+++KV ALR+AFYRQ
Sbjct:   181 GISLFIATNICESIIWKAFSPTTINTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYRQ 240

Query:   241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300
             NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL
Sbjct:   241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300

Query:   301 VSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANP 360
             VSNLYFISQL+YR++SGNFFVNLLG+WKESEYSG Q +PV G+AY ITAP+S +DMAA+P
Sbjct:   301 VSNLYFISQLLYRKFSGNFFVNLLGQWKESEYSG-QSIPVSGLAYLITAPASFSDMAAHP 359

Query:   361 FHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIP 420
             FHALFY+VFML+ACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRE+NLQKELNRYIP
Sbjct:   360 FHALFYIVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIP 419

Query:   421 TAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 476
             TAAAFGG+CIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE+ASELGFFGF
Sbjct:   420 TAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF 475
GO:0009306 "protein secretion" evidence=ISS
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
TAIR|locus:2029894 AT1G29310 "AT1G29310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037483 AT1G78720 "AT1G78720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278885 sec61a "protein transport protein SEC61 alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q7T277 sec61a "Protein transport protein Sec61 subunit alpha" [Dissostichus mawsoni (taxid:36200)] Back     alignment and assigned GO terms
UNIPROTKB|Q7T278 sec61a "Protein transport protein Sec61 subunit alpha" [Harpagifer antarcticus (taxid:43256)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020418-2 sec61a1 "Sec61 alpha 1 subunit (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHX4 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9S3 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5D0 SEC61A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96TW8SC61A_HANANNo assigned EC number0.59090.96840.9624N/Ano
Q9YDD0SECY_AERPENo assigned EC number0.31370.88650.9234yesno
P78979SC61A_YARLINo assigned EC number0.58620.97260.9830yesno
Q870W0SC61A_NEUCRNo assigned EC number0.62120.96840.9684N/Ano
Q90YL4S61A2_DANRENo assigned EC number0.69000.98310.9831yesno
Q977V3SECY_HALVDNo assigned EC number0.31140.93060.9059yesno
Q6FRY3SC61A_CANGANo assigned EC number0.57260.96840.9624yesno
Q7T278SC61A_HARANNo assigned EC number0.69550.98730.9873N/Ano
Q98SN9S61A1_ONCMYNo assigned EC number0.69340.98730.9873N/Ano
Q98SN8S61A2_ONCMYNo assigned EC number0.69760.98730.9873N/Ano
Q8AY34SC61A_HEMAMNo assigned EC number0.69130.98730.9873N/Ano
Q8AY32SC61A_GADOCNo assigned EC number0.69550.98730.9873N/Ano
Q8AY33SC61A_BORSANo assigned EC number0.68920.98730.9873N/Ano
Q8AY31SC61A_BOVVANo assigned EC number0.69550.98730.9873N/Ano
Q90ZM2S61A1_DANRENo assigned EC number0.69850.98310.9831yesno
P32915SC61A_YEASTNo assigned EC number0.54440.96840.9604yesno
P28542SECY_HALMANo assigned EC number0.30180.93270.9117yesno
Q2KHX4S61A2_BOVINNo assigned EC number0.70310.98310.9831yesno
Q7T277SC61A_DISMANo assigned EC number0.69550.98730.9873N/Ano
Q9UX84SECY_SULSONo assigned EC number0.32680.92430.9381yesno
Q5NVM7S61A2_PONABNo assigned EC number0.70100.98310.9831yesno
Q8AY36SC61A_PAGBONo assigned EC number0.69550.98730.9873N/Ano
P79088SC61A_SCHPONo assigned EC number0.54480.95160.9457yesno
Q9H9S3S61A2_HUMANNo assigned EC number0.70310.98310.9831yesno
Q25147SC61A_HALRONo assigned EC number0.68710.98520.9873N/Ano
P38379SC61A_PYRSANo assigned EC number0.70280.96420.9291N/Ano
O28377SECY_ARCFUNo assigned EC number0.31380.90330.8722yesno
O26134SECY_METTHNo assigned EC number0.36400.90540.9451yesno
Q6BN08SC61A_DEBHANo assigned EC number0.57450.97050.9645yesno
Q8U019SECY_PYRFUNo assigned EC number0.35630.92010.9358yesno
Q8AY35SC61A_NOTANNo assigned EC number0.69550.98730.9873N/Ano
P28541SECY_METVANo assigned EC number0.34460.86760.9429yesno
Q60175SECY_METJANo assigned EC number0.35560.87390.9541yesno
Q54XK2SC61A_DICDINo assigned EC number0.72030.98940.9915yesno
Q9P8E3SC61A_CANALNo assigned EC number0.58090.97050.9645N/Ano
Q6CPY9SC61A_KLULANo assigned EC number0.56060.96840.9604yesno
Q9JLR1S61A2_MOUSENo assigned EC number0.70310.98310.9831yesno
O59442SECY_PYRHONo assigned EC number0.35200.92010.9358yesno
Q752H7SC61A_ASHGONo assigned EC number0.56030.96420.9562yesno
Q9V1V8SECY_PYRABNo assigned EC number0.35850.92010.9358yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
PTZ00219474 PTZ00219, PTZ00219, Sec61 alpha subunit; Provision 0.0
PRK08568462 PRK08568, PRK08568, preprotein translocase subunit 1e-135
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 3e-98
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 2e-89
pfam00344340 pfam00344, SecY, SecY translocase 2e-88
pfam1055935 pfam10559, Plug_translocon, Plug domain of Sec61p 2e-13
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 6e-05
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional Back     alignment and domain information 
 Score =  840 bits (2173), Expect = 0.0
 Identities = 343/475 (72%), Positives = 414/475 (87%), Gaps = 2/475 (0%)

Query: 1   MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
           M    R L+L+RP +A LPEV   DRK+PF+EKV++T I+LF+FLVC Q+PLYGI S++ 
Sbjct: 1   MAKMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSS 60

Query: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
           +DPFYWMRVILASNRGT+MELGI+PIVTS +VMQLLAGSKII+VD N +EDRAL  GAQK
Sbjct: 61  SDPFYWMRVILASNRGTLMELGISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQK 120

Query: 121 LLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180
           LLG++I +GEAVAYV SGMYG ++++G GNAILII+QL FAGI+VI LDELLQKGYGLGS
Sbjct: 121 LLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKGYGLGS 180

Query: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQ 240
           GISLFIATNICE IIWKAFSPTTIN+GRG EFEGA+IALFHLL TR+DK+RAL+EAFYR 
Sbjct: 181 GISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRP 240

Query: 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300
           +LPN+TNLLATVL+FL+VIYFQGFRV LP++S+  RGQQ SYPIKLFYTSN+PIILQ+AL
Sbjct: 241 HLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTAL 300

Query: 301 VSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANP 360
           VSNLYF SQ++YRR+  NF +NLLG+W+E EYS GQ VPVGG+AYY++ P+S +D+  +P
Sbjct: 301 VSNLYFFSQILYRRFKNNFLINLLGQWQEVEYS-GQSVPVGGLAYYLSPPNSFSDIINDP 359

Query: 361 FHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKELNRYI 419
            H + Y+VF+L +CALFSKTWIEVSGSSA+DVAKQLK+Q M M G+R++ ++ + LNRYI
Sbjct: 360 IHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYI 419

Query: 420 PTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFF 474
           PTAA+FGGMCIGALT+LADF+GAIGSGTGILLAVTIIYQY+ETF KE+      F
Sbjct: 420 PTAASFGGMCIGALTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQYGFLF 474

Length = 474
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|204513 pfam10559, Plug_translocon, Plug domain of Sec61p Back     alignment and domain information
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 476
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 97.59
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.5e-106  Score=849.93  Aligned_cols=469  Identities=73%  Similarity=1.233  Sum_probs=427.3

Q ss_pred             CCCchHHhHHhHhhhchHhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhhHHHHHhhhccccchhcc
Q 011844            3 GGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELG   82 (476)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~~~~~~~~i~a~~~~SlfsLG   82 (476)
                      -|||++|.+||+++++|||++|++++++|+|++||++++++||+|++||+||+|.++..|++.+++++++.+++|+|+||
T Consensus         3 ~~~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifag~~~slf~LG   82 (474)
T PTZ00219          3 KMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDPFYWMRVILASNRGTLMELG   82 (474)
T ss_pred             CcchHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccchHHHHHHHHhcCcchHHHhc
Confidence            46999999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             chHHHhHHHHHHHHhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhHHHHHHHHHHHHH
Q 011844           83 ITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAG  162 (476)
Q Consensus        83 I~PyItAsII~QLl~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs  162 (476)
                      |+|||||||+|||+++.++.++|++.++||||+|++||++|+++|++||++++..+.++...+.++....++++||++|+
T Consensus        83 I~PyItAsII~QLL~~~~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g~  162 (474)
T PTZ00219         83 ISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAG  162 (474)
T ss_pred             cHHHHHHHHHHHHHhhCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHHH
Confidence            99999999999999988999999999999999999999999999999999998543334323334446788999999999


Q ss_pred             HHHHHHHhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCcccchhHHHHHHHHHhcchhHHHHHHHHHhcCC
Q 011844          163 IIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNL  242 (476)
Q Consensus       163 ~i~~wL~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~l  242 (476)
                      ++++||||++|||||+|||+||+|++||+++++|+.|+|.+.....+.+.+|+++.+++.+.++++|.++++++++|.++
T Consensus       163 ~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l  242 (474)
T PTZ00219        163 IVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHL  242 (474)
T ss_pred             HHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhccc
Confidence            99999999999999999999999999999999999999987766555678999888777655778888999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHhhcccEEeeeeeeccCCCCCccceeccccccchhHHHHHHHHHHHHHHHHHhhhhcCCcchhh
Q 011844          243 PNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVN  322 (476)
Q Consensus       243 ~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiifasall~~p~~i~~~~~~~~~~~~~~~  322 (476)
                      |+++.++++++++.++||+|++|||||++|+|++|+++++|+|+||+|+||+|||||++++|+++++++++.++++..++
T Consensus       243 ~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~  322 (474)
T PTZ00219        243 PNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLIN  322 (474)
T ss_pred             ccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence            99888899999999999999999999999999999999999999999999999999999999999999876555554455


Q ss_pred             ccccccccccCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCc
Q 011844          323 LLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMV  402 (476)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~~iA~~Lkk~g~~  402 (476)
                      +++.|.+... .|.++|++|+++|++||+++.+.+.+|+|.++|++++++||++|+++|++++|+||||+||||||+|++
T Consensus       323 ~l~~~~~~~~-~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~  401 (474)
T PTZ00219        323 LLGQWQEVEY-SGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMG  401 (474)
T ss_pred             cccceecccc-ccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence            5666642100 134569999999999999998888899999999999999999999999999999999999999999999


Q ss_pred             ccccccc-hHHHHHHhhchhhhhHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhhcccC
Q 011844          403 MPGHREA-NLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGF  473 (476)
Q Consensus       403 IpGiRpG-~T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~~g~GtslLI~Vgv~~~~~~qi~~e~~~~~~~  473 (476)
                      |||+||| +|+|||+|+++|+|++||++++++|++|++++..+||||+||+|||+++++|++.+|+.+ -||
T Consensus       402 IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~~~~gGTslLI~VgV~~~~~e~~~~e~~~-~~~  472 (474)
T PTZ00219        402 MVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQ-YGF  472 (474)
T ss_pred             ccCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHhh-ccC
Confidence            9999999 999999999999999999999999999999997789999999999999999999999877 443

>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
2wwb_A476 Cryo-Em Structure Of The Mammalian Sec61 Complex Bo 0.0
3mp7_A482 Lateral Opening Of A Translocon Upon Entry Of Prote 5e-78
3dkn_A430 Sec61 In The Canine Ribosome-Channel Complex From T 1e-74
1rh5_A436 The Structure Of A Protein Conducting Channel Lengt 8e-74
1rhz_A436 The Structure Of A Protein Conducting Channel Lengt 2e-73
2yxq_A431 The Plug Domain Of The Secy Protein Stablizes The C 2e-72
2yxr_A426 The Plug Domain Of The Secy Protein Stablizes The C 2e-71
3bo0_A442 Ribosome-Secy Complex Length = 442 2e-68
2ww9_A490 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 2e-60
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/471 (68%), Positives = 393/471 (83%), Gaps = 3/471 (0%)
Query: 6   RVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
           + L +++PF   LPE+Q  +RK+ F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFY
Sbjct: 4   KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 63
Query: 66  WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGII 125
           WMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV +  + DRAL NGAQKL G+I
Sbjct: 64  WMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMI 122
Query: 126 IAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLF 185
           I IG+++ YV++GMYG  +++G G  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLF
Sbjct: 123 ITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLF 182
Query: 186 IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNV 245
           IATNICE I+WKAFSPTT+N+GRG EFEGA+IALFHLL TR DKVRALREAFYRQNLPN+
Sbjct: 183 IATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNL 242
Query: 246 TNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLY 305
            NL+AT+ +F +VIYFQGFRV LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY
Sbjct: 243 MNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLY 302
Query: 306 FISQLMYRRYSGNFFVNLLGKWKESEYSG-GQYVPVGGIAYYITAPSSLADMAANPFHAL 364
            ISQ++  R+SGN  V+LLG W ++   G  +  PVGG+ +Y++ P S   +  +P HA+
Sbjct: 303 VISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAV 362
Query: 365 FYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAA 424
            Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRE ++  ELNRYIPTAAA
Sbjct: 363 VYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAA 422
Query: 425 FGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 475
           FGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct: 423 FGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
>pdb|3MP7|A Chain A, Lateral Opening Of A Translocon Upon Entry Of Protein Suggests The Mechanism Of Insertion Into Membranes Length = 482 Back     alignment and structure
>pdb|3DKN|A Chain A, Sec61 In The Canine Ribosome-Channel Complex From The Endoplasmic Reticulum Length = 430 Back     alignment and structure
>pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|1RHZ|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|2YXQ|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 431 Back     alignment and structure
>pdb|2YXR|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 426 Back     alignment and structure
>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442 Back     alignment and structure
>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 490 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
3mp7_A482 Preprotein translocase subunit SECY; protein trans 1e-175
1rh5_A436 Preprotein translocase SECY subunit; protein trans 1e-172
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 1e-172
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 1e-148
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 5e-05
3din_C431 Preprotein translocase subunit SECY; protein trans 2e-04
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 6e-04
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 7e-04
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
 Score =  500 bits (1289), Expect = e-175
 Identities = 155/469 (33%), Positives = 266/469 (56%), Gaps = 17/469 (3%)

Query: 6   RVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
               ++     + PEV+   R+VP RE+ ++T ++L ++ V +++P+YGI      D F 
Sbjct: 2   GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGI-PERIQDYFQ 60

Query: 66  WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGII 125
           ++RV+LA   G+++ LGI PIVT+G+++QLL GS+II++D    EDR      Q++  + 
Sbjct: 61  FLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVF 120

Query: 126 IAIGEAVAYVLSGMYGS-VNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISL 184
           +   EA  ++L G +G     +    A+L+I+QL   GI++I LDEL+ K +G+GSGISL
Sbjct: 121 MCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISL 179

Query: 185 FIATNICENIIWKAFSPTT-INSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP 243
           FIA  + + I+ ++ +P T  N       + A++      I    K       +   + P
Sbjct: 180 FIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAP 239

Query: 244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSN 303
           ++ +++AT+++F IV+YF+  RV +P+  +     +GSYPI+  Y SN+PIIL  AL +N
Sbjct: 240 DMLSVVATIVVFFIVVYFESMRVEIPLGYR-GVTVRGSYPIRFLYVSNIPIILTFALYAN 298

Query: 304 LYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHA 363
           +   ++++            LG++           P+ G   Y+  P ++  +  NP  A
Sbjct: 299 IQLWARVL-----DRLGHPWLGRF-----DPTTGSPISGFVLYVIPPRNIFSVIDNPVRA 348

Query: 364 LFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQKELNRYIPT 421
           + YL+  +    LF   W+E++G  AR +A+QL+   + +PG R     L+K L RYIP 
Sbjct: 349 IVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVLQRYIPY 408

Query: 422 AAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 470
              +G + +  + VLADF+GA+G+GTGILL V I+Y+++E   +E+ +E
Sbjct: 409 VTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITE 457
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Back     alignment and structure
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Length = 434 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query476
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure
Probab=100.00  E-value=1.8e-111  Score=892.02  Aligned_cols=470  Identities=68%  Similarity=1.167  Sum_probs=424.6

Q ss_pred             CCchHHhHHhHhhhchHhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhhHHHHHhhhccccchhccc
Q 011844            4 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGI   83 (476)
Q Consensus         4 ~~~~~~~~~~~~~~lp~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~~~~~~~~i~a~~~~SlfsLGI   83 (476)
                      |+|++|.+||+.+++|||++|++|+|+|||++||++++++||+|+|||+||+|.++..|++.+++++||++|+|+|+|||
T Consensus         2 ~~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~~~~~~~~~fa~~~~SifaLGI   81 (476)
T 2wwb_A            2 AIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGI   81 (476)
T ss_dssp             CSCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSCCCHHHHHHHCSSCSSSCSSSS
T ss_pred             CchHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccccHHHHHHHHccccccHHHHhh
Confidence            49999999999999999999999999999999999999999999999999999988788899999999999999999999


Q ss_pred             hHHHhHHHHHHHHhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhHHHHHHHHHHHHHH
Q 011844           84 TPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGI  163 (476)
Q Consensus        84 ~PyItAsII~QLl~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~  163 (476)
                      +||||||||||||++.++.+.+++.+ ||+|+|++||++|+++|++||++++.++.++...+.++.+.++++++|++|++
T Consensus        82 ~PyItASII~QLL~g~~iip~~~~l~-gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~  160 (476)
T 2wwb_A           82 SPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL  160 (476)
T ss_dssp             THHHHHHHHHHHHHHHCCCSCCSSSS-CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCccccchhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHH
Confidence            99999999999998766777666655 99999999999999999999999987544543334455667899999999999


Q ss_pred             HHHHHHhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCcccchhHHHHHHHHHhcchhHHHHHHHHHhcCCc
Q 011844          164 IVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP  243 (476)
Q Consensus       164 i~~wL~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~l~  243 (476)
                      ++|||||+||||||+|||+|++|++||+++++|+.|+|.+.+...+.|++|+++.+++.+.+++++.++++++++|.++|
T Consensus       161 ~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~  240 (476)
T 2wwb_A          161 IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP  240 (476)
T ss_dssp             HHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHH
T ss_pred             HHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccc
Confidence            99999999999999999999999999999999999999876666666888888777776666777777888888888877


Q ss_pred             cHHHHHHHHHHHHHHHhhcccEEeeeeeeccCCCCCccceeccccccchhHHHHHHHHHHHHHHHHHhhhhcCCcchhhc
Q 011844          244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNL  323 (476)
Q Consensus       244 ~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiifasall~~p~~i~~~~~~~~~~~~~~~~  323 (476)
                      ++..+++++++++++||+|++|||||+||+|.+|+++|+|+|+||+||||+|||||++++|+++++++++.++++..+++
T Consensus       241 ~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~  320 (476)
T 2wwb_A          241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL  320 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred             hHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhh
Confidence            87788888889999999999999999999999999999999999999999999999999999999987655444444556


Q ss_pred             cccccccc-cCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCc
Q 011844          324 LGKWKESE-YSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMV  402 (476)
Q Consensus       324 l~~~~~~~-~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~~iA~~Lkk~g~~  402 (476)
                      ++.|.+.+ +..++++|++|+++|++||+++.+.+.+|+|.++|.+++++||++|+++|++++|+||||+||||||||++
T Consensus       321 lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~  400 (476)
T 2wwb_A          321 LGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMV  400 (476)
T ss_dssp             HCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTT
T ss_pred             hhhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence            66664321 11246789999999999999888778899999999999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHhhchhhhhHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 011844          403 MPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG  475 (476)
Q Consensus       403 IpGiRpG~T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~~g~GtslLI~Vgv~~~~~~qi~~e~~~~~~~~~  475 (476)
                      |||+||.+|+|||+|+++|+|++||+|++++|++|++++.++||||+||+||++++++||+++|+. |||.-|
T Consensus       401 IpGiRp~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~~~~gGTslLI~Vgv~~~~~e~i~~e~~-~~~~~~  472 (476)
T 2wwb_A          401 MRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS-EVGSMG  472 (476)
T ss_dssp             TCCCCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHHT-CCSSCC
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-hhhhhh
Confidence            999999999999999999999999999999999999998788999999999999999999999999 997654
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 476
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 1e-117
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  348 bits (895), Expect = e-117
 Identities = 156/460 (33%), Positives = 253/460 (55%), Gaps = 42/460 (9%)

Query: 11  VRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVI 70
           + P L  +PEV+   +++ F+EK+ +T I L ++ +   + +Y   +      F + + I
Sbjct: 3   LIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTI 61

Query: 71  LASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGE 130
            AS  GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL  G QKLL II+   E
Sbjct: 62  TASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVE 121

Query: 131 AVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNI 190
           AV +V +G +G +  L    A L+I+Q+ F  II+I LDE++ K YG+GSGI LFIA  +
Sbjct: 122 AVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIAAGV 177

Query: 191 CENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLA 250
            + I   A  P           EG +    + LI                N+  +  ++ 
Sbjct: 178 SQTIFVGALGP-----------EGYLWKFLNSLIQG------------VPNIEYIAPIIG 214

Query: 251 TVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQL 310
           T+++FL+V+Y +  RV +P+     +G  G YPIK  Y SN+P+IL +AL +N+      
Sbjct: 215 TIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLA 274

Query: 311 MYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFM 370
           +Y        + +LG ++           V GIAYY++ P  L+ + ++P HA+ Y++ M
Sbjct: 275 LY-----RMGIPILGHYEGGR-------AVDGIAYYLSTPYGLSSVISDPIHAIVYMIAM 322

Query: 371 LSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQKELNRYIPTAAAFGGM 428
           +  C +F   W+E +G   + +AK++    M + G R  E  ++  L RYIP        
Sbjct: 323 IITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSA 382

Query: 429 CIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERA 468
            +G L  +A+F+GA+G GTG+LL V+I+Y+ +E   +ER 
Sbjct: 383 FVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERT 422

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query476
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1e-98  Score=786.25  Aligned_cols=419  Identities=37%  Similarity=0.705  Sum_probs=360.0

Q ss_pred             HhHHhHhhhchHhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhhHHHHHhhhccccchhccchHHHh
Q 011844            9 HLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVT   88 (476)
Q Consensus         9 ~~~~~~~~~lp~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~~~~~~~~i~a~~~~SlfsLGI~PyIt   88 (476)
                      ++++|+++++|||++|+||.++|||++||++++++||+|+|||+||+|.+.. |++.+++.++|++++|+|+|||+||||
T Consensus         1 ~~~~p~~~~~p~v~~p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~-~~~~~~~~~~a~~~~Sif~LGI~PyIt   79 (422)
T d1rh5a_           1 KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTITASRIGTLITLGIGPIVT   79 (422)
T ss_dssp             CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-SCCTTHHHHHTCCTTBTTTTTTHHHHH
T ss_pred             CCccchhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCcc-cHHHHHHHHhccccccHHHhChHHHHH
Confidence            3579999999999999999999999999999999999999999999998664 556777888899999999999999999


Q ss_pred             HHHHHHHHhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhHHHHHHHHHHHHHHHHHHH
Q 011844           89 SGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICL  168 (476)
Q Consensus        89 AsII~QLl~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~i~~wL  168 (476)
                      |||+||||+..+++++|+|+|+||+|+|++||++|+++|++||++++.++.+.   +.+....+.++++|++|++++|||
T Consensus        80 ASIImQLL~~~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~---~~~~~~~~~iv~~L~aGt~~lmwL  156 (422)
T d1rh5a_          80 AGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIYL  156 (422)
T ss_dssp             HHHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999988999999999999999999999999999999999998764332   233456678899999999999999


Q ss_pred             HhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCcccchhHHHHHHHHHhcchhHHHHHHHHHhcCCccHHHH
Q 011844          169 DELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNL  248 (476)
Q Consensus       169 ~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~  248 (476)
                      ||+||| ||+|||+|++|++||+++++|+.++|.           |.+..+.+.+.++            ...++.+..+
T Consensus       157 ~E~It~-~GiGnGiSLiI~~gI~~~i~~~~~~~~-----------~~~~~~~~~~~~~------------~~~~~~~~~l  212 (422)
T d1rh5a_         157 DEIVSK-YGIGSGIGLFIAAGVSQTIFVGALGPE-----------GYLWKFLNSLIQG------------VPNIEYIAPI  212 (422)
T ss_dssp             HHHHHH-HSSSCHHHHHHHHHHHHHHHHHHHSTT-----------CHHHHHHHHTTTT------------CCCGGGTHHH
T ss_pred             HHHHhh-cCcccchHHHHHHHHHHHHHHhccchh-----------HHHHHHHHhhhcc------------cchHHHHHHH
Confidence            999999 999999999999999999999999873           2222222221111            1123446777


Q ss_pred             HHHHHHHHHHHhhcccEEeeeeeeccCCCCCccceeccccccchhHHHHHHHHHHHHHHHHHhhhhcCCcchhhcccccc
Q 011844          249 LATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWK  328 (476)
Q Consensus       249 ~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiifasall~~p~~i~~~~~~~~~~~~~~~~l~~~~  328 (476)
                      +.+++++++++|+|++|||||++|+|++++++|+|+|+||+|+||+|||+|++++|+++++++++...     +++++|.
T Consensus       213 ~~~i~i~~~vv~~~~~~~~IPv~~~~~~~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~-----~~l~~~~  287 (422)
T d1rh5a_         213 IGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGI-----PILGHYE  287 (422)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSC-----CTTCCBC
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccccccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhccc-----ccccccC
Confidence            78888889999999999999999999999999999999999999999999999999999998865321     2344443


Q ss_pred             ccccCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCccccccc
Q 011844          329 ESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRE  408 (476)
Q Consensus       329 ~~~~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~~iA~~Lkk~g~~IpGiRp  408 (476)
                      .       ..+++++++|++||.++.+...+|.|.++|.++.+++|++|+++|++++|+||||+||||||||++|||+||
T Consensus       288 ~-------~~~~~~i~~~~~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRp  360 (422)
T d1rh5a_         288 G-------GRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRK  360 (422)
T ss_dssp             S-------SSBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------
T ss_pred             C-------CchHHHHHHHhCCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCC
Confidence            2       246788999999999888888899999999999999999999999999999999999999999999999999


Q ss_pred             c-hHH-HHHHhhchhhhhHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q 011844          409 A-NLQ-KELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKER  467 (476)
Q Consensus       409 G-~T~-~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~~g~GtslLI~Vgv~~~~~~qi~~e~  467 (476)
                      | +|. +||+|+++|+|++||+|++++|++|++++..+||||+||+|||++|++||+++|+
T Consensus       361 G~~T~~~~L~~vi~rit~~Ga~~l~~ia~~p~~l~~~~gGTslLI~V~v~l~~~~qi~~e~  421 (422)
T d1rh5a_         361 SEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRER  421 (422)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhh
Confidence            9 995 5699999999999999999999999999999999999999999999999999997