Citrus Sinensis ID: 011875

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
Protein Sequence
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEEC
Secondary Structure (PSIPRED)
cEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccEEHccEEEEEccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVLLWSTtilpgakppacdqlrngcesatwsqLMPLYFAFGLmslgsggirssslafgaeqldkgdgtkskgaLQSYFSWYYVFVSASSIVAVTCIVYIQdnlgwkvgfGVPAVIMLLSALSFFlaspfyvkskantsllpglTQVLVASFKnrrtklptqateemyhhgkgsmrlmpsenLRFLNKACmakhpeqdltpdgrasnpnslcTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQAssmdrhvtpnfeipsgsfnIFAILTLTIWIGLYdravlplaskikgkpcqlsLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQtefyytelpksmsSIASTLSGAGLSAANLVASLIMNAVDDitkrggnggwipsninkghyDYYYWLLTALSMANFLYYLACCKaygpfkgrvgtafddkdgmeeec
Flexible Loop (DISEMBL)
mvllwsttilpgakppacDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQdltpdgrasnpNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKrggnggwipsniNKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDkdgmeeec
Low Complexity Region (SEG)
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFglmslgsggirssslAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMllsalsfflasPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMssiastlsgaglsaanlvaslIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEEC
Disordered region (IsUnstruct)
**LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIR***LAF**************GALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK*********************************************************LCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA***********
Disordered Region (DISOPRED)
MVLLWSTTILPGAK***************WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG******GALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATE*************PSENLRFLNKACMAK***************NSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG********************
Disordered Region (DISEMBL)
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEEC
Disordered Region (DISPRO)
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQD**PDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEEC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	475	2.2.26 [Sep-21-2011]
Q9M817	607	Probable peptide transpor	yes	no	0.997	0.780	0.525	1e-143
Q8LPL2	591	Probable peptide/nitrate	no	no	0.991	0.796	0.516	1e-139
Q9M390	570	Peptide transporter PTR1	no	no	0.955	0.796	0.374	8e-86
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.951	0.729	0.354	4e-81
Q9LFB8	570	Peptide transporter PTR5	no	no	0.949	0.791	0.366	1e-79
Q9LYD5	481	Putative peptide/nitrate	no	no	0.791	0.781	0.382	2e-79
Q9M9V7	587	Probable peptide/nitrate	no	no	0.934	0.756	0.343	1e-78
Q9LV10	616	Probable peptide/nitrate	no	no	0.938	0.724	0.336	2e-78
Q93Z20	590	Probable peptide/nitrate	no	no	0.922	0.742	0.373	6e-78
Q944G5	636	Probable peptide/nitrate	no	no	0.934	0.698	0.347	9e-77

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/480 (52%), Positives = 339/480 (70%), Gaps = 6/480 (1%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNG--CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFG 58
           MVLLW T +LP  KP  CD    G  C S+T SQL  LY AF L+S+GSGGIR  SLAFG
Sbjct: 107 MVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFG 166

Query: 59  AEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLL 118
           A+QLD  +  K++  L+S+F WYY   + + ++A T IVYIQ++LGWK+GFGVPAV+ML+
Sbjct: 167 ADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLI 226

Query: 119 SALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATE-EMYHHGKGSMRLM 177
           +AL F LASP YV      SL  GL Q +VA++K R+  LP      + Y+H K S    
Sbjct: 227 AALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKA 286

Query: 178 PSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAV 237
           PS+ LRFLNKAC+  + E+++  DG A NP  LCT ++VEELKALIKVIPIWSTGIM+++
Sbjct: 287 PSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSI 346

Query: 238 TISQSSFLVLQASSMDRHVTPN---FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 294
             SQSSF +LQA+SMDR ++ +   F++P+GSF +F I+ L +W+ LYDRAV+PLASKI+
Sbjct: 347 NTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIR 406

Query: 295 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY 354
           G+P +LS+KLRMG+GL  S  +M   A+VE+ RR  AI++G +++  AVV +SAMW +P 
Sbjct: 407 GRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQ 466

Query: 355 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRG 414
            VL GLA A   IGQTEF+YTE PKSMSSIA++L G G++ A+L+AS+++NAV+++T R 
Sbjct: 467 YVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRN 526

Query: 415 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 474
           G   W+  NINKGHY+YYYW+L  +S  N +YY+ C  +YGP   +V     +    EEE
Sbjct: 527 GKESWVSDNINKGHYNYYYWVLAIMSFINVIYYVICSWSYGPLVDQVRNGRVNGVREEEE 586

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/478 (51%), Positives = 331/478 (69%), Gaps = 7/478 (1%)

Query: 1   MVLLWSTTILPGAKPPACDQLR-NGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MV+LW T +LP  KP  C       C SAT SQL  LY AF L+S+GSGGIR  SLAFGA
Sbjct: 109 MVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGA 168

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QLD  +  K++  L+S+F WYY   S + ++A T IVYIQD+LGWK+GFG+PA++MLL+
Sbjct: 169 DQLDNKENPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLA 228

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA-TEEMYHHGKGSMRLMP 178
              F  ASP YVK   + SL  GL QV+ A++  R   LP    + + Y+  K S    P
Sbjct: 229 GFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAP 288

Query: 179 SENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVT 238
           S+ LRFLNKAC   + ++DL  DG A N   LCT +QVE+LKAL+KVIP+WSTGIM+++ 
Sbjct: 289 SDKLRFLNKACAISNRDEDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSIN 348

Query: 239 ISQSSFLVLQASSMDRHVTPN--FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGK 296
           +SQ+SF +LQA SMDR ++ N  F+IP+GSF +F I+ L  W+ LYDRA+LPLASKI+G+
Sbjct: 349 VSQNSFQLLQAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGR 408

Query: 297 PCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLV 356
           P ++++K+RMG+GL  S  +M   A VE  RR  AI++G+++D  + V +SAMW +P  V
Sbjct: 409 PVRVNVKIRMGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYV 468

Query: 357 LSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGN 416
           L GLA A   IGQTEF+YTE PKSMSSIA++L G G++ AN++AS+I+NAV + +K+ GN
Sbjct: 469 LHGLAEALTGIGQTEFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKNSSKQ-GN 527

Query: 417 GGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 474
             WI  NINKGHYDYYYW+L  LS  N +YY+ C  +YGP   +V    D  +GM +E
Sbjct: 528 VSWIEDNINKGHYDYYYWVLAILSFVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKE 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  318 bits (814), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 176/470 (37%), Positives = 270/470 (57%), Gaps = 16/470 (3%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           M LL  +  +PG KP  C+   + C   + SQ    + A  +++LG+GGI+    +FGA+
Sbjct: 110 MTLLTLSASVPGLKPGNCNA--DTCHPNS-SQTAVFFVALYMIALGTGGIKPCVSSFGAD 166

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           Q D+ D  + K    S+F+W+Y  ++  +++A T +V+IQ N+GW  GFGVP V M+++ 
Sbjct: 167 QFDENDENE-KIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAV 225

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQ-----ATEEMYHHGKGSMR 175
             FF  S FY   +   S L  + QV+VA+F+    K+P        T +   + KGS +
Sbjct: 226 CFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRK 285

Query: 176 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMI 235
           L+ ++NL+F +KA  A   + D   DG   NP  LC+V QVEELK++I ++P+W+TGI+ 
Sbjct: 286 LVHTDNLKFFDKA--AVESQSDSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVF 342

Query: 236 AVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 294
           A   SQ S+  VLQ ++MD+H+  NFEIPS S ++F  +++  W  +YD+ ++PLA K  
Sbjct: 343 ATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFT 402

Query: 295 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY 354
                 +   RMGIGL+ S  +M    ++E  R          D  +  + MS  WQ+P 
Sbjct: 403 RNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQ 460

Query: 355 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRG 414
            +L G A  F  IGQ EF+Y + P +M S+ S LS   ++  N ++++++  V  ITK+ 
Sbjct: 461 YLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKN 520

Query: 415 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 464
           G  GWIP N+N+GH DY+++LL  LS  NFL YL   K Y  +K  VG A
Sbjct: 521 GKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRY-KYKKAVGRA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  302 bits (774), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 262/468 (55%), Gaps = 16/468 (3%)

Query: 7   TTILPGAKPPACD-QLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG 65
           T   P   P +C+ Q    C      Q+  L      +S+GSGGIR  S+ FG +Q D+ 
Sbjct: 143 TASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQR 202

Query: 66  DGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 125
                KG + S+F+WYY+  +   I+  T +VYIQD + W +GF +P  +M L+ + FF 
Sbjct: 203 TEEGVKG-VASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFA 261

Query: 126 ASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHG---KGSM--RLMPSE 180
               YV  K   S+  G+ QV+VA+ K R+ KLP +    + ++    K S+  +L  S 
Sbjct: 262 GMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSN 321

Query: 181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIM-IAVTI 239
             R L+KA +    E DLTP+G  ++   LC+V++VEE+K LI+++PIWS GI+ +A   
Sbjct: 322 QFRCLDKAAVVI--EGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMT 379

Query: 240 SQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 299
           +Q +F V QA  MDR++ P FEIP+GS ++ ++LT+ I++  YDR  +P   +I G    
Sbjct: 380 TQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSG 439

Query: 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 359
           ++L  R+G G++F+  SM    IVE  RR  +IN G   D   +  MS  W  P L+L G
Sbjct: 440 ITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMG 496

Query: 360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 419
           L  AFN+IGQ EF+ ++ P+ M SIA++L     + ++ ++S ++  V   +       W
Sbjct: 497 LCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDW 556

Query: 420 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDD 467
           +  N+N G  DY+Y+L+  L + N +Y+  C + Y   + +VG   +D
Sbjct: 557 LNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGY---RYKVGLPIED 601

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  297 bits (760), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 173/472 (36%), Positives = 263/472 (55%), Gaps = 21/472 (4%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           M LL  +  +PG  P    +    C  AT  Q    + A  L++LG+GGI+    +FGA+
Sbjct: 111 MTLLTISASVPGLTPTCSGET---CH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGAD 166

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           Q D  D  K K +  S+F+W+Y  ++  +++A + +V+IQ N+GW  G GVP V M ++ 
Sbjct: 167 QFDDTD-EKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAV 225

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGK-------GS 173
           + FF  S FY   K   S L  + QV+VAS +  + K+P    E + +  +       GS
Sbjct: 226 VFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPED--ESLLYENQDAESSIIGS 283

Query: 174 MRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGI 233
            +L  ++ L F +KA  A   E D     ++S+   LCTV QVEELKALI+++PIW+TGI
Sbjct: 284 RKLEHTKILTFFDKA--AVETESDNKGAAKSSSWK-LCTVTQVEELKALIRLLPIWATGI 340

Query: 234 MIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASK 292
           + A   SQ  +  VLQ +++D+H+ PNF+IPS S ++F  L++  W  +YD+ ++P A K
Sbjct: 341 VFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARK 400

Query: 293 IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQL 352
             G     +   R+GIGL+ S  SM +  I+E AR +      + ++    + M+  WQ+
Sbjct: 401 YTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE--ETIPMTIFWQV 458

Query: 353 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 412
           P   L G A  F  IGQ EF+Y + P +M S+ S LS   ++  N +++ ++  V  +T+
Sbjct: 459 PQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTR 518

Query: 413 RGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 464
            GG  GWI  N+N GH DY++WLL  LS  NFL YL   K Y  +K   G A
Sbjct: 519 SGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWY-TYKKTTGHA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1

 Score =  296 bits (759), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/458 (38%), Positives = 253/458 (55%), Gaps = 82/458 (17%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           MVLLW TTI+     P CD+L N C+  T  + + LY  F L ++G+GG+RSS LAF A+
Sbjct: 99  MVLLWLTTIIR----PECDKLTNVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAAD 154

Query: 61  QLDKGDGTK-SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           QL     ++ +  +L++ F+WYY  V  +  ++ + +V++Q   GW++GFGV    M LS
Sbjct: 155 QLQPNQTSRVTTSSLETLFNWYYFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMALS 214

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
              FF ASP+YV+ +                                           P+
Sbjct: 215 VALFFAASPYYVRFQK------------------------------------------PT 232

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIA-VT 238
            N R   K C  +  E                      +LK+LI VIPIWSTGI+++ VT
Sbjct: 233 RNSRNPWKLCRVQQVE----------------------DLKSLINVIPIWSTGIILSLVT 270

Query: 239 ISQSSFLVLQASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKP 297
             Q SF+VLQA +MDRH     FEIP GS+ IF +++  +++GLYD  ++PL S    +P
Sbjct: 271 ACQVSFIVLQAKTMDRHTFIQGFEIPPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREP 330

Query: 298 CQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVL 357
            +L + +RM  G + S   ++A A  E ARR  A +E  +       ++SAMW LPY++L
Sbjct: 331 FRLGVMVRMWAGYVISVLCISALAATEYARRKTARDESGT-------KLSAMWLLPYMIL 383

Query: 358 SGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNG 417
            G+A A N I Q EF+Y+ELPK+MSS+A+TLS   ++AA+L++S I+  VD  T     G
Sbjct: 384 GGIAEALNTIAQNEFFYSELPKTMSSVATTLSSLNMAAASLISSWIITIVDVTTY----G 439

Query: 418 GWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 455
            WI  NI++GH DYYYWLL  LS+ N LY++ C K+YG
Sbjct: 440 SWITENIDEGHLDYYYWLLVGLSLLNVLYFVWCKKSYG 477

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/457 (34%), Positives = 265/457 (57%), Gaps = 13/457 (2%)

Query: 7   TTILPGAKPPAC-DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG 65
           T ++    P  C  ++ + C   +  Q+M L  A  L+ +G+GGIR  +L FGA+Q D  
Sbjct: 111 TAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPK 170

Query: 66  DGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 125
                +G ++S+F+WY+   + + +V++T IVY+Q N+ W +G  +PA++MLL  + FF 
Sbjct: 171 TKEGKRG-IESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFA 229

Query: 126 ASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMR---LMPSENL 182
            S  YVK KA+ S +  +T+V+V + K RR K P     E+Y++     +   L  +E  
Sbjct: 230 GSKLYVKVKASGSPIHSITRVIVVAIKKRRLK-PV-GPNELYNYIASDFKNSKLGHTEQF 287

Query: 183 RFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIW-STGIMIAVTISQ 241
           RFL+K+ +    ++ L  DG   +   LC+++QVEE+K +I+V+P+W S  +     I Q
Sbjct: 288 RFLDKSAIQTQDDK-LNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQ 346

Query: 242 SSFLVLQASSMDRHVTP-NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 300
           +++ + Q+   DR + P +F+IP+GS+ +F +L +TI+I +YDR ++P   K  G+   +
Sbjct: 347 TTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGI 406

Query: 301 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQLPYLVL 357
           +   R+G GL     SM   AIVE  RR +A+ +   G++    A+  MS MW +P LVL
Sbjct: 407 TQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVL 466

Query: 358 SGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNG 417
            G+A A   +GQ EFYY + P++M S A +L   G+  A+ +++ +++AV D T+    G
Sbjct: 467 MGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGG 526

Query: 418 GWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 454
            W+P ++NKG  +Y+Y+L+  +   N  Y+L     Y
Sbjct: 527 SWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWY 563

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1

 Score =  293 bits (749), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 260/457 (56%), Gaps = 11/457 (2%)

Query: 7   TTILPGAKPPACDQLRNG-CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG 65
           T  +P   P AC    +  C   +  Q+  L    G + +G+GGIR  +LAFGA+Q +  
Sbjct: 135 TAAVPQLHPAACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPK 194

Query: 66  DGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 125
             +  +G + S+F+WY+   + + I+++T +VY+Q N+ W +G  +PAV+M L+ L FF 
Sbjct: 195 SESGKRG-IDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFA 253

Query: 126 ASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHH---GKGSMRLMPSENL 182
               YVK KA+ S L G+ QV+  + K R  K   Q    +Y++      + +L  ++  
Sbjct: 254 GDKLYVKIKASGSPLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKYTDQF 313

Query: 183 RFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQS 242
           RFL+KA +   PE  L PDG+ ++P  LCT++QVEE+K +++V+PIW    +  +TI+Q 
Sbjct: 314 RFLDKAAILT-PEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQ 372

Query: 243 -SFLVLQASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 300
            ++ V QA   DR + +  F IP+ ++ +F +  +T++I +YDR ++P   +I G    +
Sbjct: 373 MTYPVFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGI 432

Query: 301 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQLPYLVL 357
           +L  R+G G+ F+TAS+     VE  RR+ A+ +   G++     +  MSAMW +P L L
Sbjct: 433 TLLQRIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSL 492

Query: 358 SGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNG 417
           +G+A AF  IGQ EFYY + P++M S A ++   G   ++ + S ++  V   T+    G
Sbjct: 493 AGVAEAFAAIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGG 552

Query: 418 GWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 454
            W+  ++NKG  D +Y+++  +   NF Y+L   + Y
Sbjct: 553 NWLAEDLNKGRLDLFYFMIAGILAVNFAYFLVMSRWY 589

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  291 bits (746), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 172/460 (37%), Positives = 256/460 (55%), Gaps = 22/460 (4%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           M LL  +  LP  KP AC  +    C  AT  Q    +    L++LG+GGI+    +FGA
Sbjct: 138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +Q D  D  + +    S+F+W+Y  ++  S ++ T +V++Q+N+GW +GF +P V M +S
Sbjct: 198 DQFDDTD-PRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQ-----ATEEMYHHGKGSM 174
             SFF+ +P Y   K   S +  + QVLVA+++  +  LP        T E      GS 
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSR 316

Query: 175 RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIM 234
           ++  ++  +FL+KA +    E   +  G  SNP  LCTV QVEE+K LI++ PIW++GI+
Sbjct: 317 KIQHTDGYKFLDKAAVISEYE---SKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIV 373

Query: 235 IAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKI 293
            +V  SQ S+  V Q  SM+R +  +FEIP  SF +F  L + I I +YDR ++P   + 
Sbjct: 374 YSVLYSQISTLFVQQGRSMNR-IIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRF 432

Query: 294 KGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 353
            G P  L+   RMGIGL  S  S+ A AIVE  R  +A         +  V MS  WQ+P
Sbjct: 433 TGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA---------QDFVAMSIFWQIP 483

Query: 354 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKR 413
             +L G+A  F  IG+ EF+Y E P +M S+ S L+    +  + ++SLI+  V   T  
Sbjct: 484 QYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTAL 543

Query: 414 GGNGGWIPSNINKGHYDYYYWLLTALSMANF-LYYLACCK 452
           GG  GW+P ++NKGH DY++WLL +L + N  +Y L C K
Sbjct: 544 GGKDGWVPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVK 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3

 Score =  288 bits (736), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 261/457 (57%), Gaps = 13/457 (2%)

Query: 7   TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGD 66
           T  +P   P AC   +  CE  +  Q++ L    G + +G+GGIR  +LAFGA+Q +   
Sbjct: 153 TAAIPSLHPVACGN-KISCEGPSVGQILFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKS 211

Query: 67  GTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 126
            +  KG + S+F+WY+   + + I+++T +VYIQ N+ W +G  +P  +M L+ + FF  
Sbjct: 212 ESGKKG-INSFFNWYFFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACVIFFAG 270

Query: 127 SPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHH---GKGSMRLMPSENLR 183
              YVK KA+ S L G+ +V+ A+ K R  K   Q    +Y+H      +  L  ++  R
Sbjct: 271 DRLYVKVKASGSPLAGIARVIAAAIKKRGLKPVKQPWVNLYNHIPSNYANTTLKYTDQFR 330

Query: 184 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIW--STGIMIAVTISQ 241
           FL+KA +   PE+ L  DG AS+P  LCT++QVEE+K +++VIPIW  ST   +A+TI Q
Sbjct: 331 FLDKAAIMT-PEEKLNSDGTASDPWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAITI-Q 388

Query: 242 SSFLVLQASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 300
            ++ V QA   DR + +  F IP+ ++ +F +  +T++I  YDR ++P   ++ G    +
Sbjct: 389 MTYPVFQALQSDRRLGSGGFRIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLETGI 448

Query: 301 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQLPYLVL 357
           SL  R+G G  F+  S+     +E  RR+ A+ +   G++     +  MSA+W +P L L
Sbjct: 449 SLLQRIGAGFTFAIMSLLVSGFIEERRRNFALTKPTLGMAPRTGEISSMSALWLIPQLTL 508

Query: 358 SGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNG 417
           +G+A AF  IGQ EFYY + P++M S A ++   G   ++ +AS +++ V   T    +G
Sbjct: 509 AGIAEAFAAIGQMEFYYKQFPENMKSFAGSIFYVGAGVSSYLASFLISTVHRTTAHSPSG 568

Query: 418 GWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 454
            W+  ++NK   DY+Y++LT L + N  Y+L   + Y
Sbjct: 569 NWLAEDLNKAKLDYFYFMLTGLMVVNMAYFLLMARWY 605

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
224087732	605	predicted protein [Populus trichocarpa]	0.983	0.771	0.620	1e-167
224106908	606	predicted protein [Populus trichocarpa]	0.991	0.777	0.608	1e-166
255550992	578	nitrate transporter, putative [Ricinus c	0.987	0.811	0.613	1e-165
224141761	515	predicted protein [Populus trichocarpa]	0.96	0.885	0.621	1e-165
224141763	581	predicted protein [Populus trichocarpa]	0.997	0.815	0.597	1e-161
255549914	612	nitrate transporter, putative [Ricinus c	0.995	0.772	0.556	1e-156
224141759	564	predicted protein [Populus trichocarpa]	0.957	0.806	0.592	1e-156
224141757	568	predicted protein [Populus trichocarpa]	0.962	0.804	0.602	1e-156
224059108	479	predicted protein [Populus trichocarpa]	0.981	0.972	0.564	1e-155
356507909	568	PREDICTED: probable peptide transporter	0.962	0.804	0.577	1e-152

>gi|224087732|ref|XP_002335129.1| predicted protein [Populus trichocarpa] gi|222832886|gb|EEE71363.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/469 (62%), Positives = 354/469 (75%), Gaps = 2/469 (0%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGC-ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MVLLW TTI+PGA+ P+C Q  + C   AT  QL+ LYF  GLMS+G+GGIRS SLAFGA
Sbjct: 118 MVLLWLTTIIPGARVPSCAQFSSNCTNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGA 177

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL K D  K  G L+S+FSWYYV  SAS  +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 178 DQLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILS 237

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
            LSFFLASP YVK KA  S L G  +VLVASF+ RR +L +  T+E+YHH KGS  ++PS
Sbjct: 238 TLSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPS 297

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTI 239
           E +RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+QVEELKALIKVIPIWSTG++++V +
Sbjct: 298 ERIRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNV 357

Query: 240 SQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 299
            Q+SFL+LQAS+M+RH+T  FEIP+GSF  F +L+ T+WI LYDR ++PLASKI GKP +
Sbjct: 358 CQNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTR 417

Query: 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 359
           L LK ++GIG+L S ASM   AI+E  RR IAI EGISD   AV  MSAMW LP+  L G
Sbjct: 418 LGLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLG 477

Query: 360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 419
            + A N +G  EF+YTELPKSMSS+AS L   GLSAA+LVAS I++ V           W
Sbjct: 478 FSEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVCGFIGEANQESW 537

Query: 420 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDD 467
           + SNINKGHYDYYYWLL +L  ANF+YYLAC KAYGP K G+ G   DD
Sbjct: 538 VSSNINKGHYDYYYWLLYSLGFANFIYYLACSKAYGPCKGGQRGITGDD 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106908|ref|XP_002333609.1| predicted protein [Populus trichocarpa] gi|222837572|gb|EEE75937.1| predicted protein [Populus trichocarpa]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/473 (60%), Positives = 356/473 (75%), Gaps = 2/473 (0%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MVLLW TTI+PGA  P+C Q  + C + AT  QL+ LYF  GLMS+G+GGIRS SLAFGA
Sbjct: 118 MVLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGA 177

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL K D  K  G L+S+FSWYYV  SAS  +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 178 DQLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILS 237

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
            LSFFLASP YVK K   S L G  +VLVAS++ RR +L    T+E+YHH KGS  ++PS
Sbjct: 238 TLSFFLASPIYVKPKVKASWLIGFARVLVASYRKRRIELSWLDTDELYHHRKGSALVVPS 297

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTI 239
           E +RFLNKAC+ K+PE+DL PDGRAS+P +LCTV+QVEELKALIKVIPIWSTG++++V +
Sbjct: 298 ERIRFLNKACVIKNPEEDLMPDGRASDPWTLCTVDQVEELKALIKVIPIWSTGVLVSVNV 357

Query: 240 SQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 299
            Q+SFL+LQAS+M+RH+T  FEIP+GSF  F +L+ T+WI LYDR ++PLASKI GKP +
Sbjct: 358 CQNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTR 417

Query: 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 359
           L LK ++GIG+L S ASM   AI+E  RR IAI EGISD   AV  MSAMW LP+  L G
Sbjct: 418 LGLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLG 477

Query: 360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 419
            + A N +G  EF+YTELPKSMSS+AS L   GLSAA+LVAS I++ V           W
Sbjct: 478 FSEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESW 537

Query: 420 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDDKDGM 471
           + SNINKGHYDYYYWLL++L  ANF+YYLAC KAYGP K G+ G   D ++G+
Sbjct: 538 VSSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGPCKGGQRGITGDVREGL 590

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550992|ref|XP_002516544.1| nitrate transporter, putative [Ricinus communis] gi|223544364|gb|EEF45885.1| nitrate transporter, putative [Ricinus communis]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 289/471 (61%), Positives = 360/471 (76%), Gaps = 2/471 (0%)

Query: 1   MVLLWSTTILPGAKPPACDQL-RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           ++LLW T ++P A+P  CDQ   + C+S T  QL+ LY +FGL+S+G+GGIRSSSLAFGA
Sbjct: 107 IILLWLTAVIPQARPLPCDQFTSDSCQSPTTLQLLLLYSSFGLLSIGAGGIRSSSLAFGA 166

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL  G   K  G L+ + SWYYV VS S++VA+TCIVYIQD +GWKVGFGVP V+M ++
Sbjct: 167 DQLGMGQSLKRAGILERFISWYYVLVSVSAVVAMTCIVYIQDAMGWKVGFGVPVVLMAIA 226

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
            LSFF AS FYVKSK   S   G  QVL A++ NR     +Q + + YH+ KG+  + PS
Sbjct: 227 VLSFFSASSFYVKSKPTASSFTGFAQVLAAAYHNRSIPFSSQDSNDGYHNRKGATVVAPS 286

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTI 239
           E LRFLNKAC+ ++PE+DLTPDGRASNP SLCTV QVEELKALIK+IPIW +G++++V +
Sbjct: 287 EMLRFLNKACIIENPEEDLTPDGRASNPWSLCTVNQVEELKALIKIIPIWLSGMIMSVNV 346

Query: 240 SQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 299
           +QSSF VLQAS+MDRH+   FEIP+GS N+F +++L IW+ LYDR ++PLASK++GKP +
Sbjct: 347 AQSSFPVLQASTMDRHIISKFEIPAGSMNVFMVISLAIWVSLYDRVIVPLASKLRGKPVR 406

Query: 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 359
           LSLK RMGIG+L S+ASM A+AI E  RR  AI EG SDD  AVV MS +W LPYLVL G
Sbjct: 407 LSLKQRMGIGILLSSASMLAFAIAEKNRRERAIREGFSDDPNAVVNMSVLWLLPYLVLCG 466

Query: 360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 419
           LA  F+ IGQ EFYYTELPKSMSSIA+TL   GLSAANL+AS IM+ +D  +KRGG   W
Sbjct: 467 LAETFSAIGQNEFYYTELPKSMSSIAATLFDMGLSAANLLASFIMSTIDSFSKRGGEESW 526

Query: 420 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDG 470
           + SNINKGHYDYYYWLL +LS+ NF+YYLAC K YGP + + G A DD DG
Sbjct: 527 VSSNINKGHYDYYYWLLASLSLLNFVYYLACSKGYGPCRAKEGNAPDD-DG 576

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141761|ref|XP_002324233.1| predicted protein [Populus trichocarpa] gi|222865667|gb|EEF02798.1| predicted protein [Populus trichocarpa]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/457 (62%), Positives = 349/457 (76%), Gaps = 1/457 (0%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MVLLW TTI+PGA  P+C Q  + C + AT  QL+ LYF  GLMS+G+GGIRS SLAFGA
Sbjct: 59  MVLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGA 118

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL K D  K  G L+S+FSWYYV  SAS  +++TC+VYIQ+ +GWKVGFGVP V+M+LS
Sbjct: 119 DQLSKRDSLKHAGILESFFSWYYVISSASVFISMTCVVYIQEAMGWKVGFGVPVVLMILS 178

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
            LSFFLASP YVK KA  S L G  +VLVASF+ RR +L +  T+E+YHH KGS  ++PS
Sbjct: 179 TLSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPS 238

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTI 239
           E +RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+QVEELKALIKVIPIWSTG++++V +
Sbjct: 239 ERIRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNV 298

Query: 240 SQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 299
            Q+SFL+LQAS+M+RH+T  FEIP+GSF  F +L+ T+WI LYDR ++PLASKI GKP +
Sbjct: 299 CQNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTR 358

Query: 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 359
           L LK ++GIG+L S ASM   AI+E  RR IAI EGISD   AV  MSAMW LP+  L G
Sbjct: 359 LGLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLG 418

Query: 360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 419
            + A N +G  EF+YTELPKSMSS+AS L   GLSAA+LVAS I++ V           W
Sbjct: 419 FSEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESW 478

Query: 420 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 456
           + SNINKGHYDYYYWLL++L  ANF+YYLAC KAYGP
Sbjct: 479 VSSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGP 515

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141763|ref|XP_002324234.1| predicted protein [Populus trichocarpa] gi|222865668|gb|EEF02799.1| predicted protein [Populus trichocarpa]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/474 (59%), Positives = 362/474 (76%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           ++LLW TTI+PG +PP C Q  + CESA+  QL+ LY + GLM++G+GGIRSSSLAFGAE
Sbjct: 107 VILLWLTTIIPGTRPPPCVQFHDSCESASTLQLLLLYSSLGLMAIGAGGIRSSSLAFGAE 166

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           QL K D  K  G L+S+F WYY  VS +  +A+TCI+YIQDN+GWKVGFG+P V+M+LS 
Sbjct: 167 QLGKRDTLKRAGILESFFRWYYATVSVALFLAMTCILYIQDNMGWKVGFGIPVVLMILST 226

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 180
           LSFFLASP YVKSKA    L G  +VLVASF+NR  KL +Q T+++YHH KGS  L+PSE
Sbjct: 227 LSFFLASPIYVKSKAKAGWLDGFARVLVASFRNRSIKLSSQVTDDVYHHRKGSRLLVPSE 286

Query: 181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTIS 240
            LRFLNKAC+ ++P++DL PDGRASNP SLCTV++VEELK+LIKVIPIWSTG+++++ + 
Sbjct: 287 KLRFLNKACVIRNPKEDLIPDGRASNPWSLCTVDEVEELKSLIKVIPIWSTGVLMSINVL 346

Query: 241 QSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 300
           Q SF+VLQAS+MDRH+T  F++P+GSF  F + +  IWI LYDR  +PLASKI+GKP +L
Sbjct: 347 QHSFIVLQASTMDRHITSKFQVPAGSFTAFQLFSSVIWIALYDRVAIPLASKIRGKPTRL 406

Query: 301 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 360
            LK R+GIG+L S+A+M A AI+E+ RR  AI EG SDD  +V+ +SA+W L Y  ++G 
Sbjct: 407 GLKQRIGIGILSSSAAMAALAIIESVRRKTAIKEGFSDDPNSVLHISALWLLLYFFITGF 466

Query: 361 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 420
           A AF  IGQ EF+YTELPKSMSS+AS L   GLS +NL+ASL++  V +  K      W+
Sbjct: 467 AEAFCGIGQNEFFYTELPKSMSSVASNLFEMGLSVSNLIASLLVTIVRNFFKGNDQESWL 526

Query: 421 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 474
            SNINKGHYDYYYWLL  LS+ANF+YY AC KAYGP KG+ G A D  + + +E
Sbjct: 527 SSNINKGHYDYYYWLLAGLSLANFIYYRACSKAYGPCKGQEGNATDGGEALTDE 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549914|ref|XP_002516008.1| nitrate transporter, putative [Ricinus communis] gi|223544913|gb|EEF46428.1| nitrate transporter, putative [Ricinus communis]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/473 (55%), Positives = 342/473 (72%)

Query: 2   VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 61
           VLLW TT++P +KPP CD +   C+S T  Q+  L  +   +S+G+GGIR  SLAFGA+Q
Sbjct: 115 VLLWLTTMIPQSKPPLCDLMTQNCKSPTAGQITMLLSSMAFISIGAGGIRPCSLAFGADQ 174

Query: 62  LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 121
           LD     K++  L+SYF WYY   + S ++A+T IVYIQD+ GW+VGFGVPA+++ LSA 
Sbjct: 175 LDNKSNPKNERILESYFGWYYASTAISVLIALTGIVYIQDHHGWRVGFGVPAILVFLSAF 234

Query: 122 SFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSEN 181
            FF+ASP Y+K KA+ SLL G  QVLV ++KNR+   P   ++  YH  K S  + P+EN
Sbjct: 235 LFFIASPLYLKQKASKSLLAGFAQVLVVAYKNRKIPFPPTNSDSKYHRRKNSEYITPTEN 294

Query: 182 LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ 241
           +RFLNKAC+ ++ EQDL PDG ASNP SLCT+EQVEELKALI+VIPIWSTGIM+++ +SQ
Sbjct: 295 IRFLNKACIIRNAEQDLAPDGSASNPWSLCTIEQVEELKALIRVIPIWSTGIMMSINVSQ 354

Query: 242 SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLS 301
            SF VLQASSMDRH++  F++P+GSF  F ++++ IWI LYDRA+LPLA+KIKGKP +L 
Sbjct: 355 GSFQVLQASSMDRHLSSKFQVPAGSFATFVVISMAIWIVLYDRAILPLATKIKGKPVRLG 414

Query: 302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLA 361
           +KLRMGIGL  S   M    IVE  RR  AI+EG  ++  AVVQMSA W  P   L+G A
Sbjct: 415 VKLRMGIGLFLSCMGMVVAGIVENVRRRKAIHEGYLNNPNAVVQMSAFWLAPQYCLNGFA 474

Query: 362 MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 421
            A N IGQTEFYYTE PKSMSSIA  L G G++ ANL+A++I++ V++IT +GG  GW+P
Sbjct: 475 EALNAIGQTEFYYTEFPKSMSSIAGALFGLGMAVANLLATVILSLVNNITSKGGKVGWVP 534

Query: 422 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 474
           SNIN+GHYD YYWLL  +S  N LY+L C   YGP K ++    D+ +G + E
Sbjct: 535 SNINQGHYDNYYWLLAIMSAVNLLYFLICSWGYGPCKEQITKVSDEGNGFKHE 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141759|ref|XP_002324232.1| predicted protein [Populus trichocarpa] gi|222865666|gb|EEF02797.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/456 (59%), Positives = 339/456 (74%), Gaps = 1/456 (0%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           MVLLW TT  P A+ P C    + C S +  QL+ LY AFG M++G+GGIRSSSLAFGA+
Sbjct: 96  MVLLWLTT-FPEARQPLCVHFSHSCNSRSTLQLVHLYTAFGFMAIGAGGIRSSSLAFGAD 154

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           QL      +     +S+F WYYV V+AS  VA+TC+VYIQ+N+GW VGFGVP V+M+LSA
Sbjct: 155 QLSITHNLQRARIRESFFRWYYVTVTASVFVAMTCVVYIQENMGWMVGFGVPVVLMILSA 214

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 180
           LSF LASPFYVKSK   S + GL QV+VASF+NR  +L TQAT E+ +H  GS+  +PS+
Sbjct: 215 LSFSLASPFYVKSKPKASWITGLAQVVVASFRNRSVELSTQATVEVRYHTTGSILPVPSK 274

Query: 181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTIS 240
            LRF NKAC+  +P+ D+TPDG A +P SLCTV+QVE+LK LIKVIPIWS+G+++ V +S
Sbjct: 275 RLRFFNKACIVGNPQVDVTPDGNALDPWSLCTVDQVEDLKTLIKVIPIWSSGMLMFVNVS 334

Query: 241 QSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 300
           Q SF+VLQ S+MDRH+T  FEIP+ +F  FA+L + +W+ LYDR ++PL SKIKG+P  L
Sbjct: 335 QGSFIVLQVSTMDRHITSKFEIPAATFLSFAVLVIVLWVALYDRIIIPLVSKIKGQPVCL 394

Query: 301 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 360
            LK RMGIG+L ST SM A AI E+ RR  AI EG SD   A + +S    LP+L LSG+
Sbjct: 395 GLKKRMGIGILLSTTSMAALAIAESVRRETAIKEGFSDRPDAGLHISTFLFLPFLALSGV 454

Query: 361 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 420
           A AF  IGQ EF+YTELPKSMSS+ASTL+G G+S A+LV+S I+ AV D+T   G   W+
Sbjct: 455 AEAFTPIGQNEFFYTELPKSMSSVASTLNGIGMSVASLVSSFIVRAVRDLTTVEGQESWV 514

Query: 421 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 456
            SNINKGHYDYYYWLL +LS+ NFLYYLAC K+YGP
Sbjct: 515 SSNINKGHYDYYYWLLASLSLVNFLYYLACSKSYGP 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141757|ref|XP_002324231.1| predicted protein [Populus trichocarpa] gi|222865665|gb|EEF02796.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/458 (60%), Positives = 348/458 (75%), Gaps = 1/458 (0%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           MVLLW TT  P A+PP C Q    C+SAT  QL+ LY AF  +++G+GGIRSSSLAFGA+
Sbjct: 105 MVLLWLTT-FPEARPPPCVQFSYDCKSATTLQLLLLYTAFCFLAIGAGGIRSSSLAFGAD 163

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           QL   +  +     +S+FSWYY  V+AS  + +T +VYIQDN+GW VGFGVP V+M+LS+
Sbjct: 164 QLGTSNSLEHARIRESFFSWYYGIVAASVFLGMTFVVYIQDNIGWMVGFGVPVVLMILSS 223

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 180
           LSFF+ASP YVKSK   S + GL QV+V S +NRR KL +QAT+++ +H  GSM L+PSE
Sbjct: 224 LSFFVASPSYVKSKPKASWITGLAQVVVGSIRNRRIKLSSQATDKVDYHTTGSMLLVPSE 283

Query: 181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTIS 240
            LRFLNKAC+ ++P++DLTPDG+AS+P SLCTV+QVE+LKALIKVIPIWS G++ +V +S
Sbjct: 284 KLRFLNKACIIRNPQEDLTPDGKASDPWSLCTVDQVEDLKALIKVIPIWSAGMLKSVNVS 343

Query: 241 QSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 300
           Q SFLVLQAS+M+RH+T  FE+P+ SF    +L +T W+ LYDR ++PL SK+ GK   L
Sbjct: 344 QGSFLVLQASTMNRHITSKFEVPAASFPSIVVLVITTWVVLYDRIIIPLVSKVSGKIVCL 403

Query: 301 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 360
           +LK RMGIG+L ST SM A AI E+ RR+ AI EG  D+  A + +SAMW LPY VLSGL
Sbjct: 404 NLKQRMGIGILLSTISMAALAIAESFRRATAIKEGFPDNPNAELHISAMWLLPYFVLSGL 463

Query: 361 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 420
           A AFN IGQ EF+YTELPKSMSS+ASTL G GLSAA+LV+S I++AV D TK      W+
Sbjct: 464 AEAFNAIGQNEFFYTELPKSMSSVASTLQGLGLSAASLVSSFIVSAVRDFTKGEAQESWV 523

Query: 421 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 458
            SNINKGHYDYYYW+LT LS+ NF+YYL C K YGP +
Sbjct: 524 SSNINKGHYDYYYWILTILSLVNFIYYLVCSKTYGPCR 561

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059108|ref|XP_002299719.1| predicted protein [Populus trichocarpa] gi|222846977|gb|EEE84524.1| predicted protein [Populus trichocarpa]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/466 (56%), Positives = 340/466 (72%)

Query: 9   ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 68
           ++P  +PP CD     C++ T  Q+  L  +F LMS+G+GG+R  S+AFGA+QLD     
Sbjct: 1   MVPKVRPPPCDITTQSCKTPTTGQMTLLLSSFALMSIGAGGVRPCSIAFGADQLDNKSNP 60

Query: 69  KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 128
           K++  L+S+F WYY   + S ++++T IVYIQD+LGWKVGFGVPA++M LSAL FF ASP
Sbjct: 61  KNERVLESFFGWYYASAAISVLISLTAIVYIQDHLGWKVGFGVPAILMFLSALLFFFASP 120

Query: 129 FYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKA 188
           FYVK K + SL  G  QV V ++KNR+   P + ++  YHH + S  + P+  LRFLNKA
Sbjct: 121 FYVKQKPSKSLFTGFIQVPVVAYKNRKLAFPPRDSDGWYHHKRDSKFIAPTTKLRFLNKA 180

Query: 189 CMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQ 248
           C+ ++PEQD+  DG ASNP SLCT+EQVEELKAL+KVIP+WSTGIMI++ ISQS+F +LQ
Sbjct: 181 CIIRNPEQDIASDGSASNPWSLCTIEQVEELKALLKVIPLWSTGIMISINISQSTFQLLQ 240

Query: 249 ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGI 308
           ASSMDRH++ +F+IP+GSF +F I++L  W+ LYDRA+LPLASKIKGKP QL  KLRMGI
Sbjct: 241 ASSMDRHISSSFQIPAGSFGMFTIISLATWVILYDRAILPLASKIKGKPVQLGAKLRMGI 300

Query: 309 GLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIG 368
           GL  S  +M   AIVE+ RR  AI EG  ++  AV+ MSAMW +P   L+GLA AFN IG
Sbjct: 301 GLFLSCMAMVVSAIVESIRRRKAIREGYLNNAHAVLDMSAMWLVPQYCLNGLAEAFNAIG 360

Query: 369 QTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGH 428
           QTEFYY+E PKSMSSIA+ L G G++ ANL+AS I++AVD +T RGG   W+ +NINKGH
Sbjct: 361 QTEFYYSEFPKSMSSIAAALFGLGMAVANLLASAILSAVDKLTSRGGKESWVSNNINKGH 420

Query: 429 YDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 474
           YD YYWLL  +S  N LY+L C  AYGP   RV    D+ +G +EE
Sbjct: 421 YDNYYWLLAIMSSVNLLYFLVCSWAYGPCVERVIKVSDEGNGFKEE 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507909|ref|XP_003522705.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max]

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/461 (57%), Positives = 343/461 (74%), Gaps = 4/461 (0%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCE-SATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MVLLW TT++P +KP  C+Q  N C  S T   L+ L+ +F LMS+G+GGIRSSSLAFG 
Sbjct: 109 MVLLWLTTLIPLSKP-LCNQFTNSCNNSPTTIHLLILHSSFALMSIGAGGIRSSSLAFGV 167

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL K D  K+ G  +SYFSWYY  V+ SS++ +T +VYIQDN+GW VGFG+P ++M ++
Sbjct: 168 DQLSKRD--KNAGIKESYFSWYYAIVAMSSLIGLTVVVYIQDNMGWAVGFGIPVILMFVA 225

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
             SFFLASPFYV  +   ++L GL QVLVAS+KNR  +LP +    +YH  K S  LMP+
Sbjct: 226 TASFFLASPFYVMVEVKRNMLSGLAQVLVASYKNRLLQLPQETENGIYHLEKDSDLLMPT 285

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTI 239
           E LRFLNKAC+ ++  QDLTP+GRA NP +LCTV+QVEELKALIK++PIWSTGIM+ V I
Sbjct: 286 EKLRFLNKACLIRNSLQDLTPEGRALNPWNLCTVDQVEELKALIKIVPIWSTGIMMGVNI 345

Query: 240 SQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 299
           SQ S LVL+ASSMDRH+T NFEIPSGSF  F I++L +W+ +YDR ++P+ASKIKG P  
Sbjct: 346 SQGSLLVLEASSMDRHITSNFEIPSGSFVTFMIVSLVLWVIIYDRILVPVASKIKGSPAC 405

Query: 300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 359
           +  K +MGIGLL    ++ + A+VE  RR IAI +G  D  +AVV MSA+W LP  +L+G
Sbjct: 406 IGAKQKMGIGLLTGCIAIASLAVVEDIRRKIAIEKGYEDQPQAVVNMSALWLLPRQILNG 465

Query: 360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 419
           LA A  ++GQ EF+ TELP+SMSS+ASTL+G G S ANLVAS I++ VD++T  GG+  W
Sbjct: 466 LAEALGVVGQNEFFLTELPQSMSSLASTLNGLGSSVANLVASFILSVVDNVTGGGGHESW 525

Query: 420 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR 460
           + SNINKGHYDYYY L+ AL   NF+Y+L C K+YGP K R
Sbjct: 526 LSSNINKGHYDYYYTLICALCFVNFVYFLYCSKSYGPCKNR 566

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.993	0.777	0.466	5.8e-114
TAIR|locus:2093442	591	AT3G16180 [Arabidopsis thalian	0.991	0.796	0.462	2e-111
TAIR|locus:2144281	481	AT5G11570 [Arabidopsis thalian	0.515	0.509	0.437	3.3e-71
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.955	0.796	0.346	2.1e-70
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.949	0.791	0.336	7.4e-66
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.922	0.742	0.343	5.2e-65
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.964	0.738	0.320	1.4e-64
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.955	0.737	0.305	1.2e-63
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.970	0.785	0.306	4.2e-63
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.989	0.788	0.313	8.8e-63

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 224/480 (46%), Positives = 301/480 (62%)

Query:     1 MVLLWSTTILPGAKPPACDQLRNG--CESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFG 58
             MVLLW T +LP  KP  CD    G  C S+T SQL  LY AF               AFG
Sbjct:   107 MVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFG 166

Query:    59 AEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXX 118
             A+QLD  +  K++  L+S+F WYY   + + ++A T IVYIQ++LGWK+GFGVPAV+M  
Sbjct:   167 ADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLI 226

Query:   119 XXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATE-EMYHHGKGSMRLM 177
                      P YV      SL  GL Q +VA++K R+  LP      + Y+H K S    
Sbjct:   227 AALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKA 286

Query:   178 PSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAV 237
             PS+ LRFLNKAC+  + E+++  DG A NP  LCT ++VEELKALIKVIPIWSTGIM+++
Sbjct:   287 PSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSI 346

Query:   238 TISQSSFLVLQASSMDRHVT---PNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 294
               SQSSF +LQA+SMDR ++    +F++P+GSF +F I+ L +W+ LYDRAV+PLASKI+
Sbjct:   347 NTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIR 406

Query:   295 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY 354
             G+P +LS+KLRMG+GL  S  +M   A+VE+ RR  AI++G +++  AVV +SAMW +P 
Sbjct:   407 GRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQ 466

Query:   355 LVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRG 414
              VL GLA A   IGQTEF+YTE PKSM                     ++NAV+++T R 
Sbjct:   467 YVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRN 526

Query:   415 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 474
             G   W+  NINKGHY+YYYW+L  +S  N +YY+ C  +YGP   +V       +G+ EE
Sbjct:   527 GKESWVSDNINKGHYNYYYWVLAIMSFINVIYYVICSWSYGPLVDQVRNG--RVNGVREE 584

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)]

 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 221/478 (46%), Positives = 295/478 (61%)

Query:     1 MVLLWSTTILPGAKPPACDQLRN-GCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGA 59
             MV+LW T +LP  KP  C       C SAT SQL  LY AF               AFGA
Sbjct:   109 MVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGA 168

Query:    60 EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXX 119
             +QLD  +  K++  L+S+F WYY   S + ++A T IVYIQD+LGWK+GFG+PA++M   
Sbjct:   169 DQLDNKENPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLA 228

Query:   120 XXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA-TEEMYHHGKGSMRLMP 178
                     P YVK   + SL  GL QV+ A++  R   LP    + + Y+  K S    P
Sbjct:   229 GFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAP 288

Query:   179 SENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVT 238
             S+ LRFLNKAC   + ++DL  DG A N   LCT +QVE+LKAL+KVIP+WSTGIM+++ 
Sbjct:   289 SDKLRFLNKACAISNRDEDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSIN 348

Query:   239 ISQSSFLVLQASSMDRHVTPN--FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGK 296
             +SQ+SF +LQA SMDR ++ N  F+IP+GSF +F I+ L  W+ LYDRA+LPLASKI+G+
Sbjct:   349 VSQNSFQLLQAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGR 408

Query:   297 PCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLV 356
             P ++++K+RMG+GL  S  +M   A VE  RR  AI++G+++D  + V +SAMW +P  V
Sbjct:   409 PVRVNVKIRMGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYV 468

Query:   357 LSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGN 416
             L GLA A   IGQTEF+YTE PKSM                     I+NAV + +K+G N
Sbjct:   469 LHGLAEALTGIGQTEFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKNSSKQG-N 527

Query:   417 GGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 474
               WI  NINKGHYDYYYW+L  LS  N +YY+ C  +YGP   +V    D  +GM +E
Sbjct:   528 VSWIEDNINKGHYDYYYWVLAILSFVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKE 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 113/258 (43%), Positives = 155/258 (60%)

Query:   200 PDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIA-VTISQSSFLVLQASSMDRHV-T 257
             P   + NP  LC V+QVE+LK+LI VIPIWSTGI+++ VT  Q SF+VLQA +MDRH   
Sbjct:   231 PTRNSRNPWKLCRVQQVEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFI 290

Query:   258 PNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASM 317
               FEIP GS+ IF +++  +++GLYD  ++PL S    +P +L + +RM  G + S   +
Sbjct:   291 QGFEIPPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCI 350

Query:   318 TAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL 377
             +A A  E ARR  A +E       +  ++SAMW LPY++L G+A A N I Q EF+Y+EL
Sbjct:   351 SALAATEYARRKTARDE-------SGTKLSAMWLLPYMILGGIAEALNTIAQNEFFYSEL 403

Query:   378 PKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLT 437
             PK+M                     I+  VD  T     G WI  NI++GH DYYYWLL 
Sbjct:   404 PKTMSSVATTLSSLNMAAASLISSWIITIVDVTTY----GSWITENIDEGHLDYYYWLLV 459

Query:   438 ALSMANFLYYLACCKAYG 455
              LS+ N LY++ C K+YG
Sbjct:   460 GLSLLNVLYFVWCKKSYG 477

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 163/470 (34%), Positives = 242/470 (51%)

Query:     1 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGAE 60
             M LL  +  +PG KP  C+   + C   + SQ    + A                +FGA+
Sbjct:   110 MTLLTLSASVPGLKPGNCNA--DTCHPNS-SQTAVFFVALYMIALGTGGIKPCVSSFGAD 166

Query:    61 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXXX 120
             Q D+ D  + K    S+F+W+Y  ++  +++A T +V+IQ N+GW  GFGVP V M    
Sbjct:   167 QFDENDENE-KIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAV 225

Query:   121 XXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA-----TEEMYHHGKGSMR 175
                     FY   +   S L  + QV+VA+F+    K+P        T +   + KGS +
Sbjct:   226 CFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRK 285

Query:   176 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMI 235
             L+ ++NL+F +KA  A   + D   DG   NP  LC+V QVEELK++I ++P+W+TGI+ 
Sbjct:   286 LVHTDNLKFFDKA--AVESQSDSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVF 342

Query:   236 AVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 294
             A   SQ S+  VLQ ++MD+H+  NFEIPS S ++F  +++  W  +YD+ ++PLA K  
Sbjct:   343 ATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFT 402

Query:   295 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY 354
                   +   RMGIGL+ S  +M    ++E  R          D  +  + MS  WQ+P 
Sbjct:   403 RNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQ 460

Query:   355 LVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRG 414
              +L G A  F  IGQ EF+Y + P +M                     ++  V  ITK+ 
Sbjct:   461 YLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKN 520

Query:   415 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 464
             G  GWIP N+N+GH DY+++LL  LS  NFL YL   K Y  +K  VG A
Sbjct:   521 GKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRY-KYKKAVGRA 569

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 159/472 (33%), Positives = 236/472 (50%)

Query:     1 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGAE 60
             M LL  +  +PG  P    +    C  AT  Q    + A                +FGA+
Sbjct:   111 MTLLTISASVPGLTPTCSGET---CH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGAD 166

Query:    61 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXXX 120
             Q D  D  K K +  S+F+W+Y  ++  +++A + +V+IQ N+GW  G GVP V M    
Sbjct:   167 QFDDTD-EKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAV 225

Query:   121 XXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGK-------GS 173
                     FY   K   S L  + QV+VAS +  + K+P    E + +  +       GS
Sbjct:   226 VFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPED--ESLLYENQDAESSIIGS 283

Query:   174 MRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGI 233
              +L  ++ L F +KA  A   E D     ++S+   LCTV QVEELKALI+++PIW+TGI
Sbjct:   284 RKLEHTKILTFFDKA--AVETESDNKGAAKSSSWK-LCTVTQVEELKALIRLLPIWATGI 340

Query:   234 MIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASK 292
             + A   SQ  +  VLQ +++D+H+ PNF+IPS S ++F  L++  W  +YD+ ++P A K
Sbjct:   341 VFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARK 400

Query:   293 IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQL 352
               G     +   R+GIGL+ S  SM +  I+E AR +      + ++    + M+  WQ+
Sbjct:   401 YTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE--ETIPMTIFWQV 458

Query:   353 PYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITK 412
             P   L G A  F  IGQ EF+Y + P +M                     ++  V  +T+
Sbjct:   459 PQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTR 518

Query:   413 RGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 464
              GG  GWI  N+N GH DY++WLL  LS  NFL YL   K Y  +K   G A
Sbjct:   519 SGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWY-TYKKTTGHA 569

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 158/460 (34%), Positives = 228/460 (49%)

Query:     1 MVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGA 59
             M LL  +  LP  KP AC  +    C  AT  Q    +                  +FGA
Sbjct:   138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197

Query:    60 EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXX 119
             +Q D  D  + +    S+F+W+Y  ++  S ++ T +V++Q+N+GW +GF +P V M   
Sbjct:   198 DQFDDTD-PRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query:   120 XXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA-----TEEMYHHGKGSM 174
                     P Y   K   S +  + QVLVA+++  +  LP        T E      GS 
Sbjct:   257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSR 316

Query:   175 RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIM 234
             ++  ++  +FL+KA +    E   +  G  SNP  LCTV QVEE+K LI++ PIW++GI+
Sbjct:   317 KIQHTDGYKFLDKAAVISEYE---SKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIV 373

Query:   235 IAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKI 293
              +V  SQ S+  V Q  SM+R +  +FEIP  SF +F  L + I I +YDR ++P   + 
Sbjct:   374 YSVLYSQISTLFVQQGRSMNR-IIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRF 432

Query:   294 KGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 353
              G P  L+   RMGIGL  S  S+ A AIVE  R  +A       D    V MS  WQ+P
Sbjct:   433 TGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA------QDF---VAMSIFWQIP 483

Query:   354 YLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKR 413
               +L G+A  F  IG+ EF+Y E P +M                     I+  V   T  
Sbjct:   484 QYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTAL 543

Query:   414 GGNGGWIPSNINKGHYDYYYWLLTALSMANF-LYYLACCK 452
             GG  GW+P ++NKGH DY++WLL +L + N  +Y L C K
Sbjct:   544 GGKDGWVPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVK 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 152/474 (32%), Positives = 236/474 (49%)

Query:     1 MVLLWSTTILPGAKPPACD-QLRNGCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGA 59
             ++ +  T   P   P +C+ Q    C      Q+  L                    FG 
Sbjct:   137 LITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGV 196

Query:    60 EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXX 119
             +Q D+      KG + S+F+WYY+  +   I+  T +VYIQD + W +GF +P  +M   
Sbjct:   197 DQFDQRTEEGVKG-VASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALA 255

Query:   120 XXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQ--ATEEMYHHG-KGSM-- 174
                       YV  K   S+  G+ QV+VA+ K R+ KLP +   T   Y    K S+  
Sbjct:   256 VVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLS 315

Query:   175 RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIM 234
             +L  S   R L+KA +    E DLTP+G  ++   LC+V++VEE+K LI+++PIWS GI+
Sbjct:   316 KLHRSNQFRCLDKAAVVI--EGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGII 373

Query:   235 -IAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKI 293
              +A   +Q +F V QA  MDR++ P FEIP+GS ++ ++LT+ I++  YDR  +P   +I
Sbjct:   374 SLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRI 433

Query:   294 KGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 353
              G    ++L  R+G G++F+  SM    IVE  RR  +IN G   D   +  MS  W  P
Sbjct:   434 TGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAG---DPTGMTPMSVFWLSP 490

Query:   354 YLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKR 413
              L+L GL  AFN+IGQ EF+ ++ P+ M                     ++  V   +  
Sbjct:   491 QLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGG 550

Query:   414 GGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDD 467
                  W+  N+N G  DY+Y+L+  L + N +Y+  C + Y   + +VG   +D
Sbjct:   551 HDRPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGY---RYKVGLPIED 601

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 143/468 (30%), Positives = 242/468 (51%)

Query:     1 MVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGA 59
             ++LL  T  +P   P AC    +  C   +  Q+  L                   AFGA
Sbjct:   131 VILL--TAAVPQLHPAACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGA 188

Query:    60 EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXX 119
             +Q +    +  +G + S+F+WY+   + + I+++T +VY+Q N+ W +G  +PAV+M   
Sbjct:   189 DQFNPKSESGKRG-IDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLA 247

Query:   120 XXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGK---GSMRL 176
                       YVK KA+ S L G+ QV+  + K R  K   Q    +Y++      + +L
Sbjct:   248 CLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKL 307

Query:   177 MPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIA 236
               ++  RFL+KA +   PE  L PDG+ ++P  LCT++QVEE+K +++V+PIW    +  
Sbjct:   308 KYTDQFRFLDKAAILT-PEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYY 366

Query:   237 VTISQS-SFLVLQASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 294
             +TI+Q  ++ V QA   DR + +  F IP+ ++ +F +  +T++I +YDR ++P   +I 
Sbjct:   367 LTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRIT 426

Query:   295 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQ 351
             G    ++L  R+G G+ F+TAS+     VE  RR+ A+ +   G++     +  MSAMW 
Sbjct:   427 GLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWL 486

Query:   352 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDIT 411
             +P L L+G+A AF  IGQ EFYY + P++M                     ++  V   T
Sbjct:   487 IPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTT 546

Query:   412 KRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG 459
             +    G W+  ++NKG  D +Y+++  +   NF Y+L   + Y  +KG
Sbjct:   547 QNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFLVMSRWYR-YKG 593

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 146/476 (30%), Positives = 244/476 (51%)

Query:     7 TTILPGAKPPAC-DQLRNGCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKG 65
             T ++    P  C  ++ + C   +  Q+M L  A                 FGA+Q D  
Sbjct:   111 TAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPK 170

Query:    66 DGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXX 125
                  +G ++S+F+WY+   + + +V++T IVY+Q N+ W +G  +PA++M         
Sbjct:   171 TKEGKRG-IESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFA 229

Query:   126 XXPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMR---LMPSENL 182
                 YVK KA+ S +  +T+V+V + K RR K P     E+Y++     +   L  +E  
Sbjct:   230 GSKLYVKVKASGSPIHSITRVIVVAIKKRRLK-PV-GPNELYNYIASDFKNSKLGHTEQF 287

Query:   183 RFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIW-STGIMIAVTISQ 241
             RFL+K+ +    ++ L  DG   +   LC+++QVEE+K +I+V+P+W S  +     I Q
Sbjct:   288 RFLDKSAIQTQDDK-LNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQ 346

Query:   242 SSFLVLQASSMDRHVTP-NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 300
             +++ + Q+   DR + P +F+IP+GS+ +F +L +TI+I +YDR ++P   K  G+   +
Sbjct:   347 TTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGI 406

Query:   301 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQLPYLVL 357
             +   R+G GL     SM   AIVE  RR +A+ +   G++    A+  MS MW +P LVL
Sbjct:   407 TQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVL 466

Query:   358 SGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNG 417
              G+A A   +GQ EFYY + P++M                     +++AV D T+    G
Sbjct:   467 MGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGG 526

Query:   418 GWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFD-DKDGME 472
              W+P ++NKG  +Y+Y+L+  +   N  Y+L     Y  +K  V    D DK   E
Sbjct:   527 SWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWYR-YKDVVAKDKDMDKTSAE 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 151/481 (31%), Positives = 245/481 (50%)

Query:     1 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGAE 60
             M LL  + I+P  +PP C      C  A  +QL  LY A                AFGA+
Sbjct:   109 MTLLTISAIIPTLRPPPCKG-EEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGAD 167

Query:    61 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXXX 120
             Q D+ D  ++     +YF+WYY  + A+ ++AVT +V+IQDN+GW +G G+P V M    
Sbjct:   168 QFDESDPNQTTKTW-NYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSV 226

Query:   121 XXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHH---GKGSM--R 175
                      Y       S    L QV VA+F+ R+ ++ +  +   ++       S+  +
Sbjct:   227 IAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGK 286

Query:   176 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMI 235
             L  ++++ FL+KA +    E +L P G+  N   L TV +VEELK++I++ PI ++GI++
Sbjct:   287 LTHTKHMSFLDKAAIVTE-EDNLKP-GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILL 344

Query:   236 AVTISQS-SFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 294
                 +Q  +F + QA +M+RH+T +F+IP+GS ++F  + +   I  YDR  + +A K  
Sbjct:   345 ITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFT 404

Query:   295 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY 354
             G    ++   RMGIG + S  +      VE  R+S+AI  G+ D    +V +S +W +P 
Sbjct:   405 GLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQ 464

Query:   355 LVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRG 414
               L G+A AF  IG  EF+Y + P+SM                     ++  V   + + 
Sbjct:   465 YGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKP 524

Query:   415 GNGGWIP-SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEE 473
                 W+P +N+N+G  +Y+YWL+T L   N +YYL C K Y     +V  + +D   ++E
Sbjct:   525 DGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKPVQVHHSKEDSSPVKE 584

Query:   474 E 474
             E
Sbjct:   585 E 585

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M817	PTR6_ARATH	No assigned EC number	0.525	0.9978	0.7808	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.25930001 hypothetical protein (605 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	475
pfam00854	372	pfam00854, PTR2, POT family	4e-52
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	7e-16
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	7e-07
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	2e-05

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  180 bits (458), Expect = 4e-52
 Identities = 111/365 (30%), Positives = 175/365 (47%), Gaps = 26/365 (7%)

Query: 31  SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 90
            Q+   Y    L++LG+GGI+ +  AFGA+Q D+            +FSW+Y  ++A S+
Sbjct: 30  VQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQ----DPRRDGFFSWFYFSINAGSL 85

Query: 91  VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK--SKANTSLLPGLTQVLV 148
           +A     Y+Q N+G+ +GFG+PAV MLL+ L F L S  Y K      +     +  ++ 
Sbjct: 86  IATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIIT 145

Query: 149 ASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 208
           A+ KNR+ +LP  +    +   K + R + S+       A +         P  +     
Sbjct: 146 AAGKNRKLQLPKDSHWLYWALEKYNKRSI-SQTKVHTRVAVIFI-------PLPKFWALF 197

Query: 209 SLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSF 267
                  V  L+A++ ++PIW+  I+     +Q ++ +V Q  +MDR + P FEIP  SF
Sbjct: 198 --DQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASF 255

Query: 268 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAAR 327
             F  L + I + + D  V PL    + K   L+L  R G+G+     +    AIVEA R
Sbjct: 256 QSFNPLAVLILLPILDFLVYPLL---RLKR-GLTLPQRFGLGMFILIVANFLAAIVEAKR 311

Query: 328 RSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIAST 387
              A   G++      V +  +W LP L +SG+ +A    G  EF    LP SM S+ + 
Sbjct: 312 PRYAAALGLTSPGW-TVPLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTL 366

Query: 388 LSGAG 392
           LS A 
Sbjct: 367 LSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 79.6 bits (197), Expect = 7e-16
 Identities = 68/380 (17%), Positives = 120/380 (31%), Gaps = 62/380 (16%)

Query: 36  LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 95
           LY    L+ +G+G  + +  +   E   K D  +  G     F+ +Y+ ++  S++A   
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-----FTLFYMGINIGSLIAPII 174

Query: 96  IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYV--------KSKANTSLLPGLTQVL 147
              +  N GW VGFG+ AV M++  + F L                 +   LLP L  ++
Sbjct: 175 TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLV 234

Query: 148 VASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNP 207
           V       T L  Q                       +                 R S  
Sbjct: 235 VMILAALLTLLLNQ------------------NTFSGVLLVISILIAIIYFAEAFR-SPK 275

Query: 208 NSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSG- 265
                    +E + L+  IP++   ++      Q  S L L A          FE+P   
Sbjct: 276 VF-------DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAW 328

Query: 266 --SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 323
             S N F I+   ++  +       L    K    Q S  ++  +GL+ +      + I+
Sbjct: 329 FQSLNPFFII---LFSPILAALWTKLGRGNK----QPSTPIKFALGLILAGLG---FLIL 378

Query: 324 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 383
             A        G+         +S  W +   VL      F             P ++ S
Sbjct: 379 LLAGIWFGGPSGL---------VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKS 429

Query: 384 IASTLSGAGLSAANLVASLI 403
               +    ++A   +   +
Sbjct: 430 FIMAMWFLTVAAGQTLGGQV 449

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 36  LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 95
           +++  G +++GSG  +++  +   +  ++GD  +  G     F+ +Y+ ++  S ++   
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG----FTLFYMSINIGSFISPLL 160

Query: 96  IVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 127
              I +N G+ VGF + AV M++  L+FF   
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 58/294 (19%), Positives = 115/294 (39%), Gaps = 58/294 (19%)

Query: 42  LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT------- 94
           L++LG+GGI+    AFG +Q ++            +FS++Y  ++A S+ +         
Sbjct: 94  LIALGTGGIKPCVSAFGGDQFEER----QLSLRFRFFSFFYFAINAGSLFSTIITPILRG 149

Query: 95  CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNR 154
            +        + + FGVP ++M L+ + F + S  Y K     +++  + + +V + K R
Sbjct: 150 DVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

Query: 155 RTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE 214
                           +      P  +  +L+ A   K+  +                  
Sbjct: 210 ---------------FRTRSEDWPRLH--WLDWA-APKYLIRM----------------- 234

Query: 215 QVEELKALIKV----IPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIF 270
            +   K L++V    IP+    +  A+   Q S   LQA+ MD  V   F I        
Sbjct: 235 -IRSTKRLLRVLFLFIPLP---MFWALFDQQGSRWTLQATRMDGDVG-LFPIQPDQMQAV 289

Query: 271 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 324
             L + I + ++D  V P  +K      + +   +M +G+L +  +    A+++
Sbjct: 290 NPLLVLILVPIFDYVVYPALAKCG---TRFTSLRKMAVGMLLAALAFAVAALLQ 340

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	475
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	99.32
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.17
PRK03545	390	putative arabinose transporter; Provisional	99.11
TIGR00893	399	2A0114 d-galactonate transporter.	99.11
PRK10054	395	putative transporter; Provisional	99.08
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.06
TIGR00900	365	2A0121 H+ Antiporter protein.	99.04
PRK09874	408	drug efflux system protein MdtG; Provisional	99.04
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.04
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.04
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.03
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.01
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.0
PRK05122	399	major facilitator superfamily transporter; Provisi	99.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.99
PRK10504	471	putative transporter; Provisional	98.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.91
PRK12382	392	putative transporter; Provisional	98.86
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.86
TIGR00901	356	2A0125 AmpG-related permease.	98.85
PRK11010	491	ampG muropeptide transporter; Validated	98.82
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.82
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.8
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.79
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.78
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.78
PRK03893	496	putative sialic acid transporter; Provisional	98.77
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.77
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.76
TIGR00895	398	2A0115 benzoate transport.	98.75
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.74
PRK11663	434	regulatory protein UhpC; Provisional	98.74
PRK15011	393	sugar efflux transporter B; Provisional	98.71
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.69
PRK12307	426	putative sialic acid transporter; Provisional	98.67
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.67
TIGR00898	505	2A0119 cation transport protein.	98.66
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.66
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.66
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.64
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.64
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.63
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.62
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.61
PRK11902	402	ampG muropeptide transporter; Reviewed	98.6
PRK03633	381	putative MFS family transporter protein; Provision	98.6
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.59
PRK09528	420	lacY galactoside permease; Reviewed	98.57
PRK10091	382	MFS transport protein AraJ; Provisional	98.57
PF13347	428	MFS_2: MFS/sugar transport protein	98.57
PRK11043	401	putative transporter; Provisional	98.56
PRK09848	448	glucuronide transporter; Provisional	98.55
PLN00028	476	nitrate transmembrane transporter; Provisional	98.53
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.52
PRK03699	394	putative transporter; Provisional	98.51
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.51
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.51
PRK09705	393	cynX putative cyanate transporter; Provisional	98.5
TIGR00891	405	2A0112 putative sialic acid transporter.	98.5
KOG2532	466	consensus Permease of the major facilitator superf	98.4
PRK09669	444	putative symporter YagG; Provisional	98.4
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.4
PRK10642	490	proline/glycine betaine transporter; Provisional	98.39
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.37
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.37
PRK10429	473	melibiose:sodium symporter; Provisional	98.35
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.33
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.32
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.3
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.25
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.23
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.23
PRK09952	438	shikimate transporter; Provisional	98.21
PRK15075	434	citrate-proton symporter; Provisional	98.18
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.18
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.17
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.11
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.07
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.03
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.01
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.92
PRK11462	460	putative transporter; Provisional	97.85
KOG2533	495	consensus Permease of the major facilitator superf	97.85
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.75
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.74
PRK03545	390	putative arabinose transporter; Provisional	97.73
PRK11663	434	regulatory protein UhpC; Provisional	97.73
TIGR00893	399	2A0114 d-galactonate transporter.	97.72
TIGR00805	633	oat sodium-independent organic anion transporter.	97.66
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.66
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.66
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.64
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.61
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.6
TIGR00900	365	2A0121 H+ Antiporter protein.	97.59
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.57
PRK10133	438	L-fucose transporter; Provisional	97.54
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.54
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.53
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.5
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.48
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.45
PRK10091	382	MFS transport protein AraJ; Provisional	97.44
KOG3626	735	consensus Organic anion transporter [Secondary met	97.44
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.4
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.36
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.35
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.35
KOG3762	618	consensus Predicted transporter [General function	97.32
TIGR00891	405	2A0112 putative sialic acid transporter.	97.29
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.26
PRK10054	395	putative transporter; Provisional	97.25
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.24
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.2
PRK12307	426	putative sialic acid transporter; Provisional	97.2
PRK09874	408	drug efflux system protein MdtG; Provisional	97.19
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.18
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.15
TIGR00895	398	2A0115 benzoate transport.	97.13
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.1
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.1
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.08
TIGR00805	633	oat sodium-independent organic anion transporter.	97.07
PRK10504	471	putative transporter; Provisional	97.07
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.05
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.05
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.02
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.0
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.0
PRK05122	399	major facilitator superfamily transporter; Provisi	97.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.99
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	96.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.92
PRK03699	394	putative transporter; Provisional	96.92
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.89
PRK03633	381	putative MFS family transporter protein; Provision	96.89
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.86
PRK09705	393	cynX putative cyanate transporter; Provisional	96.86
KOG0569	485	consensus Permease of the major facilitator superf	96.86
KOG2533	495	consensus Permease of the major facilitator superf	96.83
TIGR00901	356	2A0125 AmpG-related permease.	96.77
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.71
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.7
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.7
TIGR00898	505	2A0119 cation transport protein.	96.68
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.65
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.64
PTZ00207	591	hypothetical protein; Provisional	96.63
PRK03893	496	putative sialic acid transporter; Provisional	96.62
COG2211	467	MelB Na+/melibiose symporter and related transport	96.62
PRK11010	491	ampG muropeptide transporter; Validated	96.62
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.6
KOG2615	451	consensus Permease of the major facilitator superf	96.57
PRK12382	392	putative transporter; Provisional	96.57
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.54
PRK11902	402	ampG muropeptide transporter; Reviewed	96.51
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.47
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	96.41
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.37
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.36
PRK10489	417	enterobactin exporter EntS; Provisional	96.3
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.23
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.19
PRK11043	401	putative transporter; Provisional	96.17
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.16
PRK10642	490	proline/glycine betaine transporter; Provisional	96.15
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.15
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.12
PRK10133	438	L-fucose transporter; Provisional	96.08
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	95.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	95.93
PRK09584	500	tppB putative tripeptide transporter permease; Rev	95.87
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	95.81
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.71
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.7
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.7
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.69
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	95.66
KOG0254	513	consensus Predicted transporter (major facilitator	95.66
KOG3626	735	consensus Organic anion transporter [Secondary met	95.59
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	95.57
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.53
KOG2532	466	consensus Permease of the major facilitator superf	95.49
PRK09952	438	shikimate transporter; Provisional	95.44
PRK10406	432	alpha-ketoglutarate transporter; Provisional	95.31
COG2270	438	Permeases of the major facilitator superfamily [Ge	95.25
PLN00028	476	nitrate transmembrane transporter; Provisional	95.25
TIGR00896	355	CynX cyanate transporter. This family of proteins	94.99
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	94.95
PRK15011	393	sugar efflux transporter B; Provisional	94.69
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.36
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.23
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	94.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	93.88
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	93.8
PRK15462	493	dipeptide/tripeptide permease D; Provisional	93.61
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.6
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	92.35
KOG0254	513	consensus Predicted transporter (major facilitator	92.16
PRK15075	434	citrate-proton symporter; Provisional	91.71
PRK09528	420	lacY galactoside permease; Reviewed	91.11
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	90.95
KOG0569	485	consensus Permease of the major facilitator superf	90.72
PRK09669	444	putative symporter YagG; Provisional	90.68
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	90.63
KOG2563	480	consensus Permease of the major facilitator superf	90.36
KOG2615	451	consensus Permease of the major facilitator superf	90.2
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	90.18
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	89.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	89.85
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	89.82
PRK10429	473	melibiose:sodium symporter; Provisional	89.8
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	89.77
PTZ00207	591	hypothetical protein; Provisional	89.52
PF13347	428	MFS_2: MFS/sugar transport protein	89.06
PRK11462	460	putative transporter; Provisional	88.91
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	87.55
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	86.88
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	85.32
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	85.2
PRK09848	448	glucuronide transporter; Provisional	84.99
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	83.64
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	83.36
KOG2816	463	consensus Predicted transporter ADD1 (major facili	81.12

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-73  Score=607.08  Aligned_cols=448  Identities=39%  Similarity=0.694  Sum_probs=401.5

Q ss_pred             EeeehhhhcCCCCCCCc--ccCCCCCCCCCccchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHH
Q 011875            2 VLLWSTTILPGAKPPAC--DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS   79 (475)
Q Consensus         2 ~~~~~~~~~~~~~~~~c--~~~~~~c~~~~~~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~   79 (475)
                      .+||+++.+|.++|++|  ......|+.++..+...+|.+|.++++|+|+.|||+.++++|||++.+++++ .++.++||
T Consensus       119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~-~~~~~fFn  197 (571)
T KOG1237|consen  119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV-KGIPSFFN  197 (571)
T ss_pred             HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-hCcccchh
Confidence            57899999999999998  3335589999999999999999999999999999999999999997776544 55679999


Q ss_pred             HHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCC
Q 011875           80 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP  159 (475)
Q Consensus        80 ~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~  159 (475)
                      |+|+.+|+|++++.++..|+|++.||.++|+++++.|++++++|+.|++.|++++|.++|++.+.+|+++++++++.+.+
T Consensus       198 W~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~  277 (571)
T KOG1237|consen  198 WFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVS  277 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877666


Q ss_pred             CcccchhhccCCCcccccCCccchhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011875          160 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTI  239 (475)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~  239 (475)
                      .+. ..............+++.++++|+|+.+.+.+.   .++...++|++|++++|||+|++++++|+|+..++||+++
T Consensus       278 ~~~-~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~  353 (571)
T KOG1237|consen  278 LDP-EELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVY  353 (571)
T ss_pred             Ccc-hhccccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHH
Confidence            432 111111112233445788999999988654332   3455678999999999999999999999999999999999


Q ss_pred             cC-chHHHHHHHhcCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHH
Q 011875          240 SQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMT  318 (475)
Q Consensus       240 ~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~  318 (475)
                      .| .|.++.|+.+||++++++|++|+++++.+..+.+++++|+++++.+|+.+|.+++++++++++||++|++++.++|.
T Consensus       354 aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~  433 (571)
T KOG1237|consen  354 AQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMA  433 (571)
T ss_pred             HhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHH
Confidence            99 89999999999999984599999999999999999999999999999999999887889999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHH
Q 011875          319 AWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANL  398 (475)
Q Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~  398 (475)
                      +++++|.+|++.+...     ....+++|++||+|||+++|+||+|.+++++||+|+|||++|||+.+++|+++.|+|++
T Consensus       434 ~aa~vE~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~  508 (571)
T KOG1237|consen  434 VAGIVEAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNY  508 (571)
T ss_pred             HHHHHHHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999876651     13457899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcccCCCCCCCCC-CCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011875          399 VASLIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV  461 (475)
Q Consensus       399 l~~~l~~~~~~~~~~~~~~~w~~-~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~  461 (475)
                      ++..++.++...+.+  ..+|++ +|+|++|+++|||+++.+..++.+.|+.++++|++++.++
T Consensus       509 lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~  570 (571)
T KOG1237|consen  509 LSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD  570 (571)
T ss_pred             HHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence            999999999877633  448999 9999999999999999999999999999999999887653

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-54  Score=440.99  Aligned_cols=366  Identities=16%  Similarity=0.190  Sum_probs=286.1

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~  110 (475)
                      .....++++|++|++|+|++|||++++++|||+++|+     +||.+|++||+++|+|++++|++++++++++|||.+|+
T Consensus       115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~  189 (498)
T COG3104         115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFG  189 (498)
T ss_pred             ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc-----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHH
Confidence            3467899999999999999999999999999999998     59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCccEeecC--CCCCChhh------HHHHHHHHHhhC-CCCCCCcccchhhccCCCcccccCCcc
Q 011875          111 VPAVIMLLSALSFFLASPFYVKSK--ANTSLLPG------LTQVLVASFKNR-RTKLPTQATEEMYHHGKGSMRLMPSEN  181 (475)
Q Consensus       111 i~~v~~~~~~ivf~~~~~~~~~~~--p~~spl~~------~~~v~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (475)
                      +++++|++++++|++++|++.+..  |+.+|++.      ...++...++.- .....       .+            .
T Consensus       190 ~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~------------~  250 (498)
T COG3104         190 LAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLN-------QN------------T  250 (498)
T ss_pred             HHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHH-------HH------------H
Confidence            999999999999999998887653  44445432      111111111100 00000       00            0


Q ss_pred             chh-hhh----hhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHH-HhcCC
Q 011875          182 LRF-LNK----ACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQA-SSMDR  254 (475)
Q Consensus       182 ~~~-ld~----a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~-~~~~~  254 (475)
                      .++ +..    ....+-.         ....|.   +.+ ||+||+++++++++..++||++|+| +|++++|+ +++||
T Consensus       251 ~~~~~~~~~i~~~~~~~~---------~~~~~~---~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~  317 (498)
T COG3104         251 FSGVLLVISILIAIIYFA---------EAFRSP---KVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR  317 (498)
T ss_pred             HHHHHHHHHHHHHHHHHH---------HHhccC---ccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence            000 000    0000000         001111   223 8999999999999999999999999 88888888 56777


Q ss_pred             CCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011875          255 HVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE  334 (475)
Q Consensus       255 ~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~  334 (475)
                      +.. |+++|++|+|++||++|++++|+++++|+|+.++. ++   |+++.|+++|+++++++++++.......       
T Consensus       318 ~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~-------  385 (498)
T COG3104         318 QIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWF-------  385 (498)
T ss_pred             ccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence            755 69999999999999999999999999999987764 33   9999999999999999999887765321       


Q ss_pred             CCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCC
Q 011875          335 GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRG  414 (475)
Q Consensus       335 g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~  414 (475)
                      |     ++..++|+||++++|+++++||+|++|+|+|+++++||++++|++||.|+++.++|+.+++.+........   
T Consensus       386 ~-----~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~---  457 (498)
T COG3104         386 G-----GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD---  457 (498)
T ss_pred             c-----CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc---
Confidence            1     11357999999999999999999999999999999999999999999999999999999998877422100   


Q ss_pred             CCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCC
Q 011875          415 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR  460 (475)
Q Consensus       415 ~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~  460 (475)
                             +..+..+...+|+.++.++++..++++.++++.+|.-+.
T Consensus       458 -------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~  496 (498)
T COG3104         458 -------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG  496 (498)
T ss_pred             -------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence                   011112345789999999999999999999988776543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=1.6e-46  Score=405.78  Aligned_cols=361  Identities=21%  Similarity=0.373  Sum_probs=303.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC-------C
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-------G  104 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~-------g  104 (475)
                      +...++++|+++++|+|++|||++++++|||++++.    ++++++|+||||++|+|+++++++++++++++       |
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~  159 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC  159 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence            346688999999999999999999999999987654    57999999999999999999999999998554       7


Q ss_pred             ccchhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchh
Q 011875          105 WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF  184 (475)
Q Consensus       105 ~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (475)
                      |+++|++++++|++++++|+.++|+|++.+|.++++.++.+++..+++++....+.                  ....+|
T Consensus       160 ~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------------------~~~~~~  221 (654)
T TIGR00926       160 YPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------------------HWPLHW  221 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------------------ccchhH
Confidence            99999999999999999999999999888888999888889988888764322110                  011467


Q ss_pred             hhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceec
Q 011875          185 LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIP  263 (475)
Q Consensus       185 ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip  263 (475)
                      +|+++...                   .++++||+|++++++++++..++||++++| .++++.|+.+||++++ ++++|
T Consensus       222 ld~a~~~~-------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip  281 (654)
T TIGR00926       222 LDYAKDKH-------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQ  281 (654)
T ss_pred             HHHhcccc-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecC
Confidence            78764321                   246799999999999999999999999999 9999999999999886 89999


Q ss_pred             CCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q 011875          264 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA------------  331 (475)
Q Consensus       264 ~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~------------  331 (475)
                      ++++|++|++.++++.|++++.++|.++|++.+   +++++|+++|++++++++++++++|.++++..            
T Consensus       282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~  358 (654)
T TIGR00926       282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQ  358 (654)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEE
Confidence            999999999999999999999999999887655   89999999999999999999999998764000            


Q ss_pred             -----------------------------h-------------h-------------------c-------------C--
Q 011875          332 -----------------------------I-------------N-------------------E-------------G--  335 (475)
Q Consensus       332 -----------------------------~-------------~-------------------~-------------g--  335 (475)
                                                   .             .                   .             +  
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (654)
T TIGR00926       359 VLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKIS  438 (654)
T ss_pred             EecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCce
Confidence                                         0             0                   0             0  


Q ss_pred             --C------C----------------------------------------------------------------------
Q 011875          336 --I------S----------------------------------------------------------------------  337 (475)
Q Consensus       336 --~------~----------------------------------------------------------------------  337 (475)
                        +      .                                                                      
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (654)
T TIGR00926       439 YVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRI  518 (654)
T ss_pred             EEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccc
Confidence              0      0                                                                      


Q ss_pred             ------------------------CCc------------cccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011875          338 ------------------------DDL------------RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM  381 (475)
Q Consensus       338 ------------------------~~~------------~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~  381 (475)
                                              ++.            .+.+++|++||+|||+++++||++.+++++||.+++||++|
T Consensus       519 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~m  598 (654)
T TIGR00926       519 DNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNM  598 (654)
T ss_pred             cccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHH
Confidence                                    000            01245899999999999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011875          382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY  454 (475)
Q Consensus       382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y  454 (475)
                      |+..+++|.++.++|+.+...+...-...                 +...-|.+++.++++..++|..+++.|
T Consensus       599 ks~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       599 KSVLQALWLLTVAIGNLIVVVIAEFENFS-----------------VQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999998776542111                 134467889999999999999998766

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=5.1e-48  Score=395.92  Aligned_cols=337  Identities=31%  Similarity=0.467  Sum_probs=238.0

Q ss_pred             CccchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccch
Q 011875           29 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVG  108 (475)
Q Consensus        29 ~~~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~  108 (475)
                      ++.+.+.+++||+++++|+|++|||++++++|||+++++    ++|+++|+||||++|+|+++++++++|+++++||+++
T Consensus        29 ~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~  104 (372)
T PF00854_consen   29 SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG  104 (372)
T ss_dssp             -----CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch----hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence            345578999999999999999999999999999998854    5899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCccEeec-CCCCCChhh-HHHHHHHHHhhCCCCCCCcccchhhccCC--CcccccCCccchh
Q 011875          109 FGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPG-LTQVLVASFKNRRTKLPTQATEEMYHHGK--GSMRLMPSENLRF  184 (475)
Q Consensus       109 F~i~~v~~~~~~ivf~~~~~~~~~~-~p~~spl~~-~~~v~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  184 (475)
                      |++++++|++++++|+.++++|++. +|.++++.+ ...+...+.+++....+.+. ...+....  ......  .....
T Consensus       105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~  181 (372)
T PF00854_consen  105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGS-SWLDWALFQYSERSIF--GIIVF  181 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHH-HHHHHHHHHHCCCCCC--CCCCH
T ss_pred             hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccch-HHHHHhhhhhhhhhhh--hhhhh
Confidence            9999999999999999999999988 788888888 44555555555444332111 11111000  000000  00000


Q ss_pred             hhhhhhccCCCCCCCCCCCCCCCCC-cccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCcee
Q 011875          185 LNKACMAKHPEQDLTPDGRASNPNS-LCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEI  262 (475)
Q Consensus       185 ld~a~~~~~~~~~~~~~g~~~~~~~-~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~i  262 (475)
                      .+ +.....+.         ...|. .++++++++.|.+.+.++.+.+.++|+..+.| .+....|..++|+.+++.+++
T Consensus       182 ~~-~~~~~~~~---------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (372)
T PF00854_consen  182 IR-AAVIFFPE---------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGI  251 (372)
T ss_dssp             HH-HHHHHCCC---------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-----
T ss_pred             cc-chhhhhhh---------hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhcccccccccccccc
Confidence            11 11111110         01111 14567889999999999999999999999999 777788889999888733999


Q ss_pred             cCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 011875          263 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA  342 (475)
Q Consensus       263 p~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~  342 (475)
                      |+++++++|++++++++|+++++++|++++ +++   +++++|+++|++++.+++++.+.+|.+|......+|       
T Consensus       252 p~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-------  320 (372)
T PF00854_consen  252 PPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG-------  320 (372)
T ss_dssp             -SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-------
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-------
Confidence            999999999999999999999999999883 333   899999999999999999999999987765544433       


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHH
Q 011875          343 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA  395 (475)
Q Consensus       343 ~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~i  395 (475)
                        +++.+|++|.|++++++|++++++|++.+++.||+++++.|||+|+...++
T Consensus       321 --~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  321 --KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF  371 (372)
T ss_dssp             --T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred             --CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence              466799999999999999999999999999999999999999999887654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=2.6e-42  Score=361.90  Aligned_cols=370  Identities=15%  Similarity=0.126  Sum_probs=264.8

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011875           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (475)
Q Consensus        34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~  113 (475)
                      ..+++++.++++|+|++|||.+++++|+|+++|+     +|+++|+++|+++|+|++++|++++++.+++||+.+|.+++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~-----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaa  175 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP-----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAA  175 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc-----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence            3467788899999999999999999999988775     69999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCccEeecCC-CCCChhh--HHHH-----HHHH-----HhhCCCCCCCcccchhhccCCCcccccCCc
Q 011875          114 VIMLLSALSFFLASPFYVKSKA-NTSLLPG--LTQV-----LVAS-----FKNRRTKLPTQATEEMYHHGKGSMRLMPSE  180 (475)
Q Consensus       114 v~~~~~~ivf~~~~~~~~~~~p-~~spl~~--~~~v-----~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (475)
                      ++|++++++++.++|++.+..+ +++|.+.  ..+.     ....     .......... ....+...    ....   
T Consensus       176 igm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~---  247 (493)
T PRK15462        176 VGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEW-SVYALIVA----TIIG---  247 (493)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHH---
Confidence            9999999999998877754311 1233311  0000     0000     0000000000 00000000    0000   


Q ss_pred             cchhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHH-HhcCCCCCC
Q 011875          181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQA-SSMDRHVTP  258 (475)
Q Consensus       181 ~~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~-~~~~~~~~~  258 (475)
                       .-++  ... ..                  +....+|+||+..++++++..++||+.|+| ++++++.+ +++|++++ 
T Consensus       248 -~~~~--~~~-~~------------------~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-  304 (493)
T PRK15462        248 -LGVL--AKI-YR------------------KAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-  304 (493)
T ss_pred             -HHHH--HHH-HH------------------hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-
Confidence             0000  000 00                  011347899999999999999999999999 77666555 78999997 


Q ss_pred             CceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 011875          259 NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISD  338 (475)
Q Consensus       259 ~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~  338 (475)
                      |+++|++|+|++||++|+++.|++.++|.++.+|. +   +|+.+.|+++|++++++||+++.+.....    ..     
T Consensus       305 g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~-~---~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~----~~-----  371 (493)
T PRK15462        305 GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN-R---TVRIWGKFALGLGLMSAGFCILTLSARWS----AM-----  371 (493)
T ss_pred             ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHhhc----CC-----
Confidence            89999999999999999999999999886654332 2   38999999999999999999988765311    11     


Q ss_pred             CccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHH-HHHHHHHHHHHHhhhhcccCCCCC
Q 011875          339 DLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL-SAANLVASLIMNAVDDITKRGGNG  417 (475)
Q Consensus       339 ~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~-~ig~~l~~~l~~~~~~~~~~~~~~  417 (475)
                          ..++|++|++..|+++|+||++++|+|+++++++||++++|++||+|++.. ++|+.+++.+.+.....+.    +
T Consensus       372 ----~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~----~  443 (493)
T PRK15462        372 ----YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF----D  443 (493)
T ss_pred             ----CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----C
Confidence                125999999999999999999999999999999999999999999999965 8999999999888753210    0


Q ss_pred             CCCCCCCcCcchhHHHHHHHHHHHHH--HHHHHHHhhhcCCCcCC
Q 011875          418 GWIPSNINKGHYDYYYWLLTALSMAN--FLYYLACCKAYGPFKGR  460 (475)
Q Consensus       418 ~w~~~~ln~~~~~~~f~~la~l~~~~--~~~~~~~~~~y~~~~~~  460 (475)
                      +-...+-+...+..+|..++.++++.  .+.+.-+.+.+|.|+|.
T Consensus       444 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
T PRK15462        444 ASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRA  488 (493)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            00000001123556788788766554  34444444555666554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=4.6e-38  Score=332.94  Aligned_cols=365  Identities=11%  Similarity=0.129  Sum_probs=269.2

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHH
Q 011875           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAV  114 (475)
Q Consensus        35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v  114 (475)
                      .+++++.++++|+|++|||.+++++|+|+++++     +|++.|+++|+++|+|+++++.+++++.+++||+++|.++++
T Consensus       107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~-----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDP-----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             HHHHHHHHHHhccccccCCHHHHHHHhcCCCch-----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            467899999999999999999999999987663     578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCccEeec--CCCCCChhh--HHHHH------HHHHhh-CCCCCCCcccchhhccCCCcccccCCccch
Q 011875          115 IMLLSALSFFLASPFYVKS--KANTSLLPG--LTQVL------VASFKN-RRTKLPTQATEEMYHHGKGSMRLMPSENLR  183 (475)
Q Consensus       115 ~~~~~~ivf~~~~~~~~~~--~p~~spl~~--~~~v~------~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (475)
                      +++++++.++.+++++++.  +|++++...  .....      ...... .....+..  ..+...   + .+   ....
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~-~i---~~~~  252 (489)
T PRK10207        182 GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVAN--LVLIVL---S-IV---VTII  252 (489)
T ss_pred             HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHH---H-HH---HHHH
Confidence            9999999999888777653  333333311  11000      001000 00000000  000000   0 00   0000


Q ss_pred             hhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHH-hcCCCCCCCce
Q 011875          184 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQAS-SMDRHVTPNFE  261 (475)
Q Consensus       184 ~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~-~~~~~~~~~~~  261 (475)
                      ++...                      ... +..++++.+..+++++..++||++|+| .+.+.+|.+ ++|++.. |++
T Consensus       253 f~~~~----------------------~~~-~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~  308 (489)
T PRK10207        253 FFREA----------------------FKL-DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFS  308 (489)
T ss_pred             HHHHH----------------------hcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceE
Confidence            00000                      001 234567777888889999999999999 787777776 5787765 899


Q ss_pred             ecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 011875          262 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR  341 (475)
Q Consensus       262 ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~  341 (475)
                      +|++++|++||++++++.|+..+++ +.+++++.+   +++++|+++|+++++++++++++.+....   ..        
T Consensus       309 i~~~~~~~~n~~~iii~~pl~~~l~-~rl~~r~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~~---~~--------  373 (489)
T PRK10207        309 INPVSFQALNPFWVVVASPILAGIY-THLGSKGKD---LSMPMKFTLGMFLCSLGFLTAAAAGMWFA---DA--------  373 (489)
T ss_pred             ECHHHHHhHhHHHHHHHHHHHHHHH-HHHhhCCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhc---CC--------
Confidence            9999999999999999999999854 444444333   89999999999999999988766542110   01        


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 011875          342 AVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP  421 (475)
Q Consensus       342 ~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~  421 (475)
                       ..++|+||+++.|+++|+||++.+|+++|++++.||++++|++||+|+++.++|+.+|+.+++.+.....     ..  
T Consensus       374 -~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~-----~~--  445 (489)
T PRK10207        374 -QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN-----IT--  445 (489)
T ss_pred             -CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cc--
Confidence             1247899999999999999999999999999999999999999999999999999999999987652210     00  


Q ss_pred             CCCc-CcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCC
Q 011875          422 SNIN-KGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR  460 (475)
Q Consensus       422 ~~ln-~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~  460 (475)
                      |+.. ++.+..+|..+++.+++.+++++++.|+++|.-++
T Consensus       446 ~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~  485 (489)
T PRK10207        446 DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINT  485 (489)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            0100 12356889999999999999999999999887433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=1.9e-37  Score=327.58  Aligned_cols=360  Identities=14%  Similarity=0.151  Sum_probs=266.8

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~  112 (475)
                      .+.+++++.++++|.|+++|+.+++++|+++++++    .+|+++|+++|+++|+|+++|+.+++++.+++||+++|.++
T Consensus       102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~  177 (475)
T TIGR00924       102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA  177 (475)
T ss_pred             HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            45677889999999999999999999999987764    35889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCccEeecCCCCCChhhH-----H--HHH----HHHHhhCCCCCCCcccchhhccCCCcccccCCcc
Q 011875          113 AVIMLLSALSFFLASPFYVKSKANTSLLPGL-----T--QVL----VASFKNRRTKLPTQATEEMYHHGKGSMRLMPSEN  181 (475)
Q Consensus       113 ~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~-----~--~v~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (475)
                      ++.+++++++++..++.+++.++++++.+..     .  +++    ....+..........          ......   
T Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---  244 (475)
T TIGR00924       178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVI----------ANILLM---  244 (475)
T ss_pred             HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHH----------HHHHHH---
Confidence            9999999999988888776655444433210     0  000    000000000000000          000000   


Q ss_pred             chhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHH-HHHHhcCCCCCCC
Q 011875          182 LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLV-LQASSMDRHVTPN  259 (475)
Q Consensus       182 ~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~-~q~~~~~~~~~~~  259 (475)
                        -...+..++...      . ...+    +.++ +|+++..+++++++..++||++|+| .+++. +|.+++|++++ +
T Consensus       245 --~~~~~~~~~~~~------~-~~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~  309 (475)
T TIGR00924       245 --TVTLAVIIFFFR------L-AFKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-G  309 (475)
T ss_pred             --HHHHHHHHHHHH------H-HHhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-c
Confidence              000000000000      0 0001    0122 3455667789999999999999999 66554 56678998886 8


Q ss_pred             ceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 011875          260 FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD  339 (475)
Q Consensus       260 ~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~  339 (475)
                      +++|+++++++|++++++++|++++++.++ +|++++   ++...||++|+++++++++.++++..    ...       
T Consensus       310 ~~ip~~~~~~~n~~~iil~~p~~~~~~~~l-~~~~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~-------  374 (475)
T TIGR00924       310 MSVPVIWFQSLNPFWVVVGSPVLAMIWTRL-GRKGKD---PTTPLKFTLGMLFCGASFLTFAASIW----FAD-------  374 (475)
T ss_pred             eEECHHHHHhhhHHHHHHHHHHHHHHHHHH-HhCCCC---CCcHHHHHHHHHHHHHHHHHHHHHHh----hcC-------
Confidence            999999999999999999999999865544 333333   78999999999999999999887632    111       


Q ss_pred             ccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCC
Q 011875          340 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW  419 (475)
Q Consensus       340 ~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w  419 (475)
                        ...++|+||++++|+++|+||++++|+++++++++||+++||+++|+|.+..++|+.+++.+........      + 
T Consensus       375 --~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~------~-  445 (475)
T TIGR00924       375 --AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ------G-  445 (475)
T ss_pred             --CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c-
Confidence              1236899999999999999999999999999999999999999999999999999999999887654211      1 


Q ss_pred             CCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011875          420 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF  457 (475)
Q Consensus       420 ~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~  457 (475)
                               ...+|..+++++++.++++++..|+++|.
T Consensus       446 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  474 (475)
T TIGR00924       446 ---------VTGVFGKIGLVTLLVGVVMALMVPWLNRM  474 (475)
T ss_pred             ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                     34578889999999999999999988764

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.8e-36  Score=321.93  Aligned_cols=367  Identities=12%  Similarity=0.140  Sum_probs=269.1

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~  112 (475)
                      .+.+++++.++++|.|+++|+..++++++|+++++     +++++++++|+++|+|+++++.+++++.+++||+++|.++
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~-----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~  186 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP-----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALS  186 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch-----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            45677888999999999999999999999987653     5788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCccEeec--CCCCCChhhH------HHHHHHHHh-hCCCCCCCcccchhhccCCCcccccCCccch
Q 011875          113 AVIMLLSALSFFLASPFYVKS--KANTSLLPGL------TQVLVASFK-NRRTKLPTQATEEMYHHGKGSMRLMPSENLR  183 (475)
Q Consensus       113 ~v~~~~~~ivf~~~~~~~~~~--~p~~spl~~~------~~v~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (475)
                      ++.++++++.+++.++.+++.  +|+++|....      ..+...... ....+.+.......+..          ....
T Consensus       187 ~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~  256 (500)
T PRK09584        187 VVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVV----------ALGI  256 (500)
T ss_pred             HHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH----------HHHH
Confidence            999999999888876666543  2333333211      011111110 00000000000000000          0000


Q ss_pred             hhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHH-hcCCCCCCCce
Q 011875          184 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQAS-SMDRHVTPNFE  261 (475)
Q Consensus       184 ~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~-~~~~~~~~~~~  261 (475)
                      ..+....                .   + +.+.+|+++.+..+++++..++||++|.| .+.+..|+. ++|+++. |++
T Consensus       257 ~~~~~~~----------------~---~-~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~  315 (500)
T PRK09584        257 VVIFGKE----------------A---F-AMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIA  315 (500)
T ss_pred             HHHHHHH----------------H---h-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceE
Confidence            0000000                0   0 11235677777888899999999999999 888888874 5777776 899


Q ss_pred             ecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 011875          262 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR  341 (475)
Q Consensus       262 ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~  341 (475)
                      +|++++|++|++++++++|++++++.    |.+++   +++.+|+++|+++.+++++.+++....    .         +
T Consensus       316 i~~~~~~s~n~i~iil~~p~~~~~~~----~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~---------~  375 (500)
T PRK09584        316 VEPEQYQALNPFWIMIGSPILAAIYN----KMGDR---LPMPHKFAIGMVLCSGAFLVLPLGAKF----A---------N  375 (500)
T ss_pred             ECHHHHHHHhHHHHHHHHHHHHHHHH----HhCcC---CCcHHHHHHHHHHHHHHHHHHHHHHHh----c---------C
Confidence            99999999999999999999998653    33333   578999999999999999998776421    1         1


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 011875          342 AVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP  421 (475)
Q Consensus       342 ~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~  421 (475)
                      +...+|++|++++|+++|+||++++|+++++++++||+++||++||+|+++.++|+.+++.+.+.+..+..       ..
T Consensus       376 ~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~-------~~  448 (500)
T PRK09584        376 DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN-------VT  448 (500)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cc
Confidence            12369999999999999999999999999999999999999999999999999999999999876542110       00


Q ss_pred             CCCc-CcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q 011875          422 SNIN-KGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVG  462 (475)
Q Consensus       422 ~~ln-~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~  462 (475)
                      +... .+.+..+|..+++++++..+++++.+++.+|..+++.
T Consensus       449 ~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~  490 (500)
T PRK09584        449 DPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDS  490 (500)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            1101 1125678888999888888899999999988766554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.32  E-value=7.9e-10  Score=114.79  Aligned_cols=299  Identities=12%  Similarity=0.001  Sum_probs=165.2

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~  112 (475)
                      .+.+++...+.+++.|...+...+.+.|.+++       +++.++..++++..++|..+++.+.+++.+..||++.|.+.
T Consensus       110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~  182 (417)
T PRK10489        110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA  182 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence            45566666677788888888888888887754       24788889999999999999999999998888999999988


Q ss_pred             HHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhcc
Q 011875          113 AVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAK  192 (475)
Q Consensus       113 ~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~  192 (475)
                      ++..+++.+..+...+    .+|+...              +.  .+. +                    ...+..+   
T Consensus       183 ~~~~~~~~~~~~~l~~----~~~~~~~--------------~~--~~~-~--------------------~~~~~~~---  218 (417)
T PRK10489        183 AAGTFITLLPLLRLPA----LPPPPQP--------------RE--HPL-R--------------------SLLAGFR---  218 (417)
T ss_pred             HHHHHHHHHHHHhCCC----CCCCCcc--------------cc--cch-H--------------------HHHHHHH---
Confidence            8777766554432211    1111000              00  000 0                    0000000   


Q ss_pred             CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCCCCCce-ecCCccchhh
Q 011875          193 HPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFE-IPSGSFNIFA  271 (475)
Q Consensus       193 ~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q~s~~~~q~~~~~~~~~~~~~-ip~~~~~~~n  271 (475)
                                            .+-..+.+..+   ++...+ +........+.  ........+  .. .-.+++....
T Consensus       219 ----------------------~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~--p~~~~~~~g--~~~~~~g~~~~~~  268 (417)
T PRK10489        219 ----------------------FLLASPVVGGI---ALLGGL-LTMASAVRVLY--PALADEVWQ--MGAAQIGLLYAAV  268 (417)
T ss_pred             ----------------------HHHcChHHHHH---HHHHHH-HHHHHhHHHhh--HHHHHhccC--CChhHhHHHHHHH
Confidence                                  00000111111   111111 11111111111  111111111  10 0123334444


Q ss_pred             HHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHH
Q 011875          272 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQ  351 (475)
Q Consensus       272 ~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wl  351 (475)
                      .+..++..++..++     .++      .+..+-+..+.++.+++++.....                      -+.++.
T Consensus       269 ~~g~~ig~~~~~~l-----~~~------~~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~  315 (417)
T PRK10489        269 PLGAALGALTSGWL-----AHS------ARPGLLMLLSTLGSFLAVGLFGLM----------------------PMWILA  315 (417)
T ss_pred             HHHHHHHHHHHHHh-----hhc------cCcchHHHHHHHHHHHHHHHHHcc----------------------chHHHH
Confidence            44444444443332     221      112233555666666555433221                      133444


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhH
Q 011875          352 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY  431 (475)
Q Consensus       352 i~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~  431 (475)
                      +...++.+++.....+....++.+.+|++.||..+|++.....+|..+|+.+...+.+..             +   ...
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-------------g---~~~  379 (417)
T PRK10489        316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-------------T---PVA  379 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-------------c---hhh
Confidence            566778888888888888889999999999999999999888889989888887665211             1   223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011875          432 YYWLLTALSMANFLYYLACCKAYGPFKGRV  461 (475)
Q Consensus       432 ~f~~la~l~~~~~~~~~~~~~~y~~~~~~~  461 (475)
                      .++..+++.++..++.....+++++++.+|
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (417)
T PRK10489        380 SASASGFGLLIIGVLLLLVLGELRRFRQTP  409 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            455566665555565556656666655554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.17  E-value=2e-09  Score=111.47  Aligned_cols=288  Identities=14%  Similarity=0.109  Sum_probs=165.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.+++.|.+.|...+.+.|.+++       ++|.++.++.+...++|..+++.+.+++. ..||+..|.+
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~  169 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------HQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT  169 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            456677888888999999999999999988754       35899999999999999999999999998 7899999998


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhc
Q 011875          112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA  191 (475)
Q Consensus       112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~  191 (475)
                      .++..++..++.....+..   ++  ++..                .+. .                   ..+    +  
T Consensus       170 ~~~~~~~~~i~~~~~~~~~---~~--~~~~----------------~~~-~-------------------~~~----~--  202 (400)
T PRK11646        170 GAVLFVLAAAFNAWLLPAY---KL--STVR----------------TPV-R-------------------EGM----T--  202 (400)
T ss_pred             HHHHHHHHHHHHHHhCCcc---cc--cccc----------------hhh-H-------------------HHH----H--
Confidence            8877666654433322110   00  0000                000 0                   000    0  


Q ss_pred             cCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCCCCCceecCCccchhh
Q 011875          192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNIFA  271 (475)
Q Consensus       192 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q~s~~~~q~~~~~~~~~~~~~ip~~~~~~~n  271 (475)
                                            +-..+ ++++.+.   +....++..+.|...+  ....+....  +...-.+++.+++
T Consensus       203 ----------------------~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~--~p~~~~~~~--~~~~~~g~l~~~~  252 (400)
T PRK11646        203 ----------------------RVLRD-KRFVTYV---LTLTGYYMLAVQVMLM--LPIMVNDIA--GSPSAVKWMYAIE  252 (400)
T ss_pred             ----------------------HHHcC-chHHHHH---HHHHHHHHHHHHHHHh--hhhhHHhhc--CCchHHHHHHHHH
Confidence                                  00001 1111111   1111222222221000  011111111  1001122333444


Q ss_pred             HHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHH
Q 011875          272 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQ  351 (475)
Q Consensus       272 ~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wl  351 (475)
                      .+..+.......+    +..|+      .+..+++..|+++.+++++..+...                      +.++.
T Consensus       253 ~~~~~~~~~~~~~----~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~  300 (400)
T PRK11646        253 ACLSLTLLYPIAR----WSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS----------------------NLQQL  300 (400)
T ss_pred             HHHHHHHHHHHHH----HHHHh------cchhHHHHHHHHHHHHHHHHHHHhh----------------------hHHHH
Confidence            4433322222222    12221      2333457777777777765444321                      23334


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhH
Q 011875          352 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY  431 (475)
Q Consensus       352 i~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~  431 (475)
                      +...++.++++....|.....+.+.+|++.+|..+|+..+..++|..+|+.+...+.+...          ..+  ....
T Consensus       301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~----------~~~--~~~~  368 (400)
T PRK11646        301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK----------ALN--QPEL  368 (400)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh----------hcC--Ccch
Confidence            4455778899999999999999999999999999999999999999999988877653210          001  1234


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011875          432 YYWLLTALSMANFLYYL  448 (475)
Q Consensus       432 ~f~~la~l~~~~~~~~~  448 (475)
                      .|++.++++++..+.+.
T Consensus       369 ~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        369 PWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555666666655544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.11  E-value=2.3e-08  Score=102.87  Aligned_cols=85  Identities=13%  Similarity=0.094  Sum_probs=70.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.+++.|.+-|...+++.|.++++       +|.+.++++..+.++|..+++.+.+.+.+.+||++.|.+
T Consensus        96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  168 (390)
T PRK03545         96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG-------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA  168 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh-------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence            4556677777888888888899999999988652       478899999999999999999999999888999999999


Q ss_pred             HHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSF  123 (475)
Q Consensus       112 ~~v~~~~~~ivf  123 (475)
                      .++..++..+..
T Consensus       169 ~~~~~~l~~~~~  180 (390)
T PRK03545        169 IGGGALITLLLL  180 (390)
T ss_pred             HHHHHHHHHHHH
Confidence            887766655443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.11  E-value=2.7e-08  Score=100.63  Aligned_cols=86  Identities=12%  Similarity=0.177  Sum_probs=73.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.|...+...+++.|.+++       ++|.+.++++..+.++|.++++.+.+++.++.+|++.|.+
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  153 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII  153 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence            567788888899999999999999999998864       3588999999999999999999999998889999999998


Q ss_pred             HHHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSFF  124 (475)
Q Consensus       112 ~~v~~~~~~ivf~  124 (475)
                      .++..++..+..+
T Consensus       154 ~~~~~~~~~~~~~  166 (399)
T TIGR00893       154 EGVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHHHhh
Confidence            8877666555543

>PRK10054 putative transporter; Provisional

Probab=99.08  E-value=1.2e-08  Score=105.51  Aligned_cols=82  Identities=13%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011875           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (475)
Q Consensus        34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~  113 (475)
                      +.++++..+++.+.+.+.|...+...|.+++       ++|.+++++.|...|+|..+++.+.+++.+ .||+..|.+.+
T Consensus        97 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~  168 (395)
T PRK10054         97 TLVVLFFALINCAYSVFSTVLKAWFADNLSS-------TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence            3344444555666677788888888888754       358899999999999999999999998874 79999999988


Q ss_pred             HHHHHHHHHH
Q 011875          114 VIMLLSALSF  123 (475)
Q Consensus       114 v~~~~~~ivf  123 (475)
                      +..+++++..
T Consensus       169 ~~~~i~~i~~  178 (395)
T PRK10054        169 ICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHH
Confidence            8777775443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.06  E-value=4.6e-08  Score=100.53  Aligned_cols=280  Identities=10%  Similarity=0.073  Sum_probs=161.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.+.+.+..-|...++..+ ++        +++...+.+.....++|..+++.+.+++.+++||+..|.+
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~--------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~  163 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ--------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI  163 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH--------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            45666667667777777777877776543 21        2456678999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhc
Q 011875          112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA  191 (475)
Q Consensus       112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~  191 (475)
                      .++..++.++.+.. .+.   .+|+++.               .   +. +                             
T Consensus       164 ~~~~~~~~~~~~~~-~~~---~~~~~~~---------------~---~~-~-----------------------------  191 (382)
T TIGR00902       164 LTAGLAFMLIGFLI-KPT---IPPKDAI---------------P---ED-E-----------------------------  191 (382)
T ss_pred             HHHHHHHHHHHHHc-CCC---CCCCccc---------------c---cc-c-----------------------------
Confidence            76554433333221 110   0111000               0   00 0                             


Q ss_pred             cCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccchh
Q 011875          192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIF  270 (475)
Q Consensus       192 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~  270 (475)
                                   ...++  +..+.-..|++   ..+.+...+++..+.+ .+.....-.  |.... .  .-.+.+..+
T Consensus       192 -------------~~~~~--~~~~~l~~~~~---~~~l~~~~l~~~~~~~~~~~~~~~l~--~~g~s-~--~~~g~l~~~  248 (382)
T TIGR00902       192 -------------SQGDS--AFIALLKNPMN---LRFLAAVCLIQGAHAAYYGFSAIYWQ--AAGIS-A--SATGLLWGI  248 (382)
T ss_pred             -------------cccch--hHHHHHcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCC-H--hHHHHHHHH
Confidence                         00000  00000001222   2222333334444444 222211111  11111 0  011233344


Q ss_pred             hHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHH
Q 011875          271 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW  350 (475)
Q Consensus       271 n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~w  350 (475)
                      +.+..++..++.+++    .+|       .++.+-+.+|.++.++.+...+..                      .+.++
T Consensus       249 ~~~~~i~~~~~~~~l----~~r-------~g~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~  295 (382)
T TIGR00902       249 GVLAEIIIFAFSNKL----FQN-------CSARDLLLISAIACVGRWAIIGAI----------------------EAFPL  295 (382)
T ss_pred             HHHHHHHHHHHhHHH----Hhh-------CCHHHHHHHHHHHHHHHHHHHHhH----------------------hhHHH
Confidence            444444444443332    233       344555777888888877665443                      23455


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHh-HHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcch
Q 011875          351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY  429 (475)
Q Consensus       351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~-l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~  429 (475)
                      ++..-+++++...+..+..+.++.+. |++.++.++|++. ...++|..+++.+++.+.+.             .  +  
T Consensus       296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-------------~--g--  357 (382)
T TIGR00902       296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-------------L--G--  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------c--c--
Confidence            55556999999999999999999998 9999999999986 56788888888888776521             1  1  


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 011875          430 DYYYWLLTALSMANFLY  446 (475)
Q Consensus       430 ~~~f~~la~l~~~~~~~  446 (475)
                      ...|+..+++++++.++
T Consensus       358 ~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       358 AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            24577788877765443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.04  E-value=3e-08  Score=99.68  Aligned_cols=86  Identities=20%  Similarity=0.125  Sum_probs=74.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.+++.|...|...+++.|.++++       +|.+.++++..+.++|.++++.+.+++.+..||+..|.+
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE-------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            5677888889999999999999999999988653       589999999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSFF  124 (475)
Q Consensus       112 ~~v~~~~~~ivf~  124 (475)
                      .++..+++.+..+
T Consensus       164 ~~~~~~~~~~~~~  176 (365)
T TIGR00900       164 DAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877766655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.04  E-value=2.6e-08  Score=102.50  Aligned_cols=85  Identities=14%  Similarity=0.092  Sum_probs=65.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.+++.+. -|...+...+++++       ++|.....+++.+.++|.++++.+.+++.+..+|+..|.+
T Consensus       106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  177 (408)
T PRK09874        106 NIWQFLILRALLGLLGGF-VPNANALIATQVPR-------NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI  177 (408)
T ss_pred             hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            355666666777777554 47777778887743       2478888999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSFF  124 (475)
Q Consensus       112 ~~v~~~~~~ivf~  124 (475)
                      .++..++..+..+
T Consensus       178 ~~~~~~~~~~~~~  190 (408)
T PRK09874        178 TASVLFLCFLVTL  190 (408)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887766655443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.04  E-value=1.5e-08  Score=106.77  Aligned_cols=62  Identities=15%  Similarity=-0.022  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...++.+++.....+...+.+.+..|++.++..+|++.....+|+.+|+.+...+.
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  393 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV  393 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence            34556667788999998999999999999999999999999999999999999998877654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.04  E-value=1.1e-07  Score=98.21  Aligned_cols=85  Identities=22%  Similarity=0.190  Sum_probs=70.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.+.++..+.++|.|...|...+++.|.+++       ++|....++++.+.++|.++++.+...+.+..+|+..|.+
T Consensus       102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  174 (406)
T PRK11551        102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV  174 (406)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence            355677777888999999999999999998854       2588999999999999999999998888888999999998


Q ss_pred             HHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSF  123 (475)
Q Consensus       112 ~~v~~~~~~ivf  123 (475)
                      .++..++..++.
T Consensus       175 ~~~~~~~~~~~~  186 (406)
T PRK11551        175 GGVGPLLLVPLL  186 (406)
T ss_pred             HHHHHHHHHHHH
Confidence            877655554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.03  E-value=2e-07  Score=96.40  Aligned_cols=84  Identities=13%  Similarity=0.058  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~  112 (475)
                      .+.+++...+.+++.+...+...+.+.|.++++       ++.+..++.+...++|..+++.+.+++.++.||+..|.+.
T Consensus       101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~  173 (406)
T PRK15402        101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA-------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF  173 (406)
T ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            456667777888888888888888898888653       3667778888888999999999999998889999999988


Q ss_pred             HHHHHHHHHHH
Q 011875          113 AVIMLLSALSF  123 (475)
Q Consensus       113 ~v~~~~~~ivf  123 (475)
                      ++..+++.+..
T Consensus       174 ~~~~~~~~~~~  184 (406)
T PRK15402        174 AALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHH
Confidence            87777665543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.01  E-value=5.5e-08  Score=96.89  Aligned_cols=258  Identities=18%  Similarity=0.174  Sum_probs=173.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.+++.|...+...++..|.++++       +|...+++.+.+.++|..+++.+.+.+.++.+|+..|.+
T Consensus        86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  158 (352)
T cd06174          86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK-------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI  158 (352)
T ss_pred             cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4567788888999999999999999999998763       488899999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhc
Q 011875          112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA  191 (475)
Q Consensus       112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~  191 (475)
                      .++..+++.+......             +..    ..                                          
T Consensus       159 ~~~~~~~~~~~~~~~~-------------~~~----~~------------------------------------------  179 (352)
T cd06174         159 LAILGLLLALLLLFLL-------------RLL----LL------------------------------------------  179 (352)
T ss_pred             HHHHHHHHHHHHHHHH-------------HHH----HH------------------------------------------
Confidence            8888877776654331             000    00                                          


Q ss_pred             cCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhc---C-chHHHHHHHhcCCCCCCCceecCCcc
Q 011875          192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTIS---Q-SSFLVLQASSMDRHVTPNFEIPSGSF  267 (475)
Q Consensus       192 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~---Q-~s~~~~q~~~~~~~~~~~~~ip~~~~  267 (475)
                                                          +.+....++..+.   + ...+.  .+..  +.. .  ...+++
T Consensus       180 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~-~--~~~~~~  216 (352)
T cd06174         180 ------------------------------------LALAFFLLSFGYYGLLTYLPLYL--QEVL--GLS-A--AEAGLL  216 (352)
T ss_pred             ------------------------------------HHHHHHHHHhHHHHHHHHHHHHH--HHhc--CCC-H--HHHHHH
Confidence                                                0000000000000   0 01110  0100  110 0  112344


Q ss_pred             chhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011875          268 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKL-RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  346 (475)
Q Consensus       268 ~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~-ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v  346 (475)
                      .....+..++..++..++    .+|.+++       + -+.++.++.+++++.....                      -
T Consensus       217 ~~~~~~~~~i~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~----------------------~  263 (352)
T cd06174         217 LSLFGLGGILGALLGGLL----SDRLGRR-------RLLLLIGLLLAALGLLLLALA----------------------P  263 (352)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHhh-------hHHHHHHHHHHHHHHHHHHHh----------------------c
Confidence            555555555555655553    2333222       2 4667777777776655432                      1


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcC
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK  426 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~  426 (475)
                      +.++.+..+++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+.....+..      +        
T Consensus       264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~--------  329 (352)
T cd06174         264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------G--------  329 (352)
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C--------
Confidence            25667788999999999999999999999999999999999999999999999999887764210      1        


Q ss_pred             cchhHHHHHHHHHHHHHHHHH
Q 011875          427 GHYDYYYWLLTALSMANFLYY  447 (475)
Q Consensus       427 ~~~~~~f~~la~l~~~~~~~~  447 (475)
                        ....|.+.+++.++..+.+
T Consensus       330 --~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         330 --YGGVFLILAALALLAALLL  348 (352)
T ss_pred             --cchHHHHHHHHHHHHHHHh
Confidence              2345666666666665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.00  E-value=1.2e-07  Score=98.77  Aligned_cols=85  Identities=21%  Similarity=0.274  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhh---hheeccCCccchh
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI---VYIQDNLGWKVGF  109 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~---~~l~~~~g~~~~F  109 (475)
                      .+.++++..+.++|.|...+...++++|.++++       +|.....+++.+.++|.++++.+.   ..+.+..||++.|
T Consensus       127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA-------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh-------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            457888889999999999999999999988653       478889999999999999999988   7777788999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 011875          110 GVPAVIMLLSALSFF  124 (475)
Q Consensus       110 ~i~~v~~~~~~ivf~  124 (475)
                      .+.++..++.++..+
T Consensus       200 ~~~~~~~~~~~~~~~  214 (481)
T TIGR00879       200 GLQLIPAGLLFLGLF  214 (481)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            997776666554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.00  E-value=2.3e-07  Score=95.47  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~  112 (475)
                      ...++++-.+.++|.|...+...+...|.++++       +|.+...++..+.++|..+++.+.+++.+..||+..|.+.
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  184 (399)
T PRK05122        112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL-------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI  184 (399)
T ss_pred             HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh-------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            445666777888999999999999999988543       3677888999999999999999999988889999888776


Q ss_pred             HHHHH
Q 011875          113 AVIML  117 (475)
Q Consensus       113 ~v~~~  117 (475)
                      ++..+
T Consensus       185 ~~~~~  189 (399)
T PRK05122        185 MLLAL  189 (399)
T ss_pred             HHHHH
Confidence            65443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.99  E-value=1.5e-07  Score=100.68  Aligned_cols=266  Identities=15%  Similarity=0.089  Sum_probs=158.1

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~  110 (475)
                      .+.+.+++...++++|.+++.|.-++++.+..+++       +..++.++.-...|+.-++||.++|.+-...|-...|+
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~-------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~  173 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE-------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL  173 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh-------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            45677888888999999999999999999999764       47888999999999999999999999887889899999


Q ss_pred             HHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhh
Q 011875          111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM  190 (475)
Q Consensus       111 i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~  190 (475)
                      +.+++.++++..+...++..   +++..|-.++.+-++                               +..+++.    
T Consensus       174 inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~-------------------------------~G~ryv~----  215 (524)
T PF05977_consen  174 INALSFLISILALLRWKPPP---PPSSLPRERFFSALR-------------------------------EGLRYVR----  215 (524)
T ss_pred             HHHHHHHHHHHHHHHccccc---cccccchhhhhhhHH-------------------------------HHHHHHh----
Confidence            99999888766555443221   111111000000000                               0001100    


Q ss_pred             ccCCCCCCCCCCCCCCCCCcccchhHHHHHHHH-HHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCCCCCceecCCccch
Q 011875          191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALI-KVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPSGSFNI  269 (475)
Q Consensus       191 ~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l-~~l~l~~~~~~f~~~~~Q~s~~~~q~~~~~~~~~~~~~ip~~~~~~  269 (475)
                                             .. ...+.++ +...+.++...+|.      .+-..+++   .++    ..+..+..
T Consensus       216 -----------------------~~-~~l~~~l~~~~~~~l~~~a~~a------LlPl~a~~---~l~----~~a~~yGl  258 (524)
T PF05977_consen  216 -----------------------SS-PPLRSVLLRSFLFNLFASAVWA------LLPLFARD---VLG----GGASGYGL  258 (524)
T ss_pred             -----------------------cc-hHHHHHHHHHHHHHHhhhHHHH------hhhHHHHH---HhC----CcHHHHHH
Confidence                                   00 0111111 11111111111111      11111111   111    12222222


Q ss_pred             hhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHH
Q 011875          270 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM  349 (475)
Q Consensus       270 ~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~  349 (475)
                      +...  .-..-+...++.+.++++      .+..+-+..+.++.+++++..++.                      -+.|
T Consensus       259 l~a~--~gvGai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~----------------------~~~~  308 (524)
T PF05977_consen  259 LLAA--FGVGAILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS----------------------PSFW  308 (524)
T ss_pred             HHHH--HHHHHHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc----------------------hHHH
Confidence            2211  122233334444444432      333444666777777766655443                      2445


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          350 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       350 wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      ..++..++.|++-..........+-+.+|++++|..++++......+..+|..+.+.+.
T Consensus       309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678889999999999888888999999999999999998766666666666655544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10504 putative transporter; Provisional

Probab=98.97  E-value=5.3e-07  Score=95.08  Aligned_cols=88  Identities=9%  Similarity=0.086  Sum_probs=72.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      ..+.++++..+.++|.|.+.|...+.+.|.+++       +++.+.+.++....++|..+++.+.+++.+..||++.|.+
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~  169 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI  169 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence            355677788899999999999999999988753       3577889999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 011875          112 PAVIMLLSALSFFLA  126 (475)
Q Consensus       112 ~~v~~~~~~ivf~~~  126 (475)
                      ......++.+.....
T Consensus       170 ~~~~~~l~~~~~~~~  184 (471)
T PRK10504        170 NIPVGIIGAIATLML  184 (471)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            877666665554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.96  E-value=2.3e-08  Score=100.21  Aligned_cols=87  Identities=24%  Similarity=0.298  Sum_probs=77.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.|...+...+++.|.++++       +|...+++.+.+.++|..+++.+.+++.++.||++.|.+
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~  156 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE-------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI  156 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred             hHHHHhhhccccccccccccccccccccccchhh-------hhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence            3457888889999999999999999999999873       389999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011875          112 PAVIMLLSALSFFL  125 (475)
Q Consensus       112 ~~v~~~~~~ivf~~  125 (475)
                      .++..++..++...
T Consensus       157 ~~~~~~~~~il~~~  170 (352)
T PF07690_consen  157 SAILSLIAAILFIL  170 (352)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             ccchhhhhhhhHhh
Confidence            99998888775433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.96  E-value=2.8e-07  Score=97.18  Aligned_cols=84  Identities=10%  Similarity=0.104  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGV  111 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~i  111 (475)
                      ...+++.-.+.++|.|..-|.......+.+++       ++|..+..+++.+.++|..+++.+++++.+. .||+..|.+
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i  203 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV  203 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence            34566677788999999999999999988864       3588999999999999999999999999888 499999999


Q ss_pred             HHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSF  123 (475)
Q Consensus       112 ~~v~~~~~~ivf  123 (475)
                      .++..++..+++
T Consensus       204 ~~~~~~~~~~~~  215 (465)
T TIGR00894       204 FGIVGCAWSLLW  215 (465)
T ss_pred             hhHHHHHHHHHH
Confidence            887665554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.96  E-value=1.5e-07  Score=96.63  Aligned_cols=259  Identities=8%  Similarity=0.028  Sum_probs=145.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.+++...+.+++.+...|...++..+.. +        +|.+.+.+.....++|..++|.+++++.+++||+..|.+
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~-~--------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~  163 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ-K--------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI  163 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHHH-h--------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            4566666677788888889998888777642 1        245567777888899999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhc
Q 011875          112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA  191 (475)
Q Consensus       112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~  191 (475)
                      .++..++.++... ..+   +.+|+++.               .  .+. .                             
T Consensus       164 ~~~~~~~~~~~~~-~~~---~~~~~~~~---------------~--~~~-~-----------------------------  192 (382)
T PRK11128        164 LTAGVASMLLGQL-LRP---TIMPQGES---------------R--QQE-S-----------------------------  192 (382)
T ss_pred             HHHHHHHHHHHHH-ccC---CCCCcccc---------------c--ccc-c-----------------------------
Confidence            7765555443322 211   11111100               0  000 0                             


Q ss_pred             cCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccchh
Q 011875          192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIF  270 (475)
Q Consensus       192 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~  270 (475)
                       +        .  ...+     .+.-..|.+.   .+.+...+.+..+.+ .+.......  +.+..  - -..+.+..+
T Consensus       193 -~--------~--~~~~-----~~i~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~--~~g~s--~-~~~g~~~~~  248 (382)
T PRK11128        193 -A--------G--WPAW-----KALLKEPTVW---RFLLCVSLLQGSHAAYYGFSAIYWQ--AAGYS--A-STIGYLWSL  248 (382)
T ss_pred             -c--------c--cchH-----HHHHcChhHH---HHHHHHHHHHHHhHhHHHHHHHHHH--HCCCC--H-hHHHHHHHH
Confidence             0        0  0000     0000112222   222222222333322 121111111  11111  0 112344455


Q ss_pred             hHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHH
Q 011875          271 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW  350 (475)
Q Consensus       271 n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~w  350 (475)
                      +.+..++...+..++    .+|       .+..+.+.+++++.+++++..+..                      -+.++
T Consensus       249 ~~~~~~~~~~~~g~l----~~r-------~~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~  295 (382)
T PRK11128        249 GVVAEVLIFAFSNRL----FRR-------WSARDLLLLSAICGVVRWGLMGST----------------------TALPW  295 (382)
T ss_pred             HHHHHHHHHHHHHHH----HHH-------CCHHHHHHHHHHHHHHHHHHHHhh----------------------hhHHH
Confidence            555555554544443    233       233444667777777766544332                      23555


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHh-HHHHHHHHHHHHHHHhhh
Q 011875          351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVD  408 (475)
Q Consensus       351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~-l~~~ig~~l~~~l~~~~~  408 (475)
                      .++.-++.++++.+..+.....+.++.|.+ ++.++++.. +..++|..+|+.+.+...
T Consensus       296 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        296 LIVIQILHCGTFTVCHLAAMRYIAARPGSE-VIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667778999999999999999998886555 588899876 555677777777776654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.91  E-value=1.2e-07  Score=111.10  Aligned_cols=287  Identities=11%  Similarity=-0.024  Sum_probs=158.1

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~  110 (475)
                      .+.+.++++..+.++|.+++.|...+++.|.++++       ++..+.+++.++.++|.++|+.+++++.+..||+..|.
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~-------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~  178 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD-------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA  178 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc-------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            35678888999999999999999999999999763       47889999999999999999999999988999998885


Q ss_pred             HHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhh
Q 011875          111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM  190 (475)
Q Consensus       111 i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~  190 (475)
                      +.++..++++++.+.-    ++.+++....+                ..  .                    +...... 
T Consensus       179 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~----------------~~--~--------------------~~~~~~~-  215 (1140)
T PRK06814        179 LLMGIAVLGWLASLFI----PKTGNAAPDLK----------------ID--R--------------------NIIRSTI-  215 (1140)
T ss_pred             HHHHHHHHHHHHHhhC----CCCCCCCCCCe----------------ec--c--------------------chHHHHH-
Confidence            4444444333332221    11111100000                00  0                    0000000 


Q ss_pred             ccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccch
Q 011875          191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNI  269 (475)
Q Consensus       191 ~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~  269 (475)
                                             +.....++-..+..+.+....++.+... .+.+.....+   .++.+- .-.+++.+
T Consensus       216 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g~~~-~~~g~~~~  268 (1140)
T PRK06814        216 -----------------------TLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE---TLGGDE-NVATLFLA  268 (1140)
T ss_pred             -----------------------HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HcCCch-HHHHHHHH
Confidence                                   0000000000111122222223322222 1111111111   111000 01234455


Q ss_pred             hhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCccccccchH
Q 011875          270 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEG-ISDDLRAVVQMSA  348 (475)
Q Consensus       270 ~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~vs~  348 (475)
                      ...+..++...+..++    .++.       ...+.+.+|.++.+++.+.+++...   +...... ...-..-....+.
T Consensus       269 ~~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~  334 (1140)
T PRK06814        269 VFSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFASS---SVPAEPAQLKSILVFLSKRHG  334 (1140)
T ss_pred             HHHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhccc---ccccccccccchhhhhccccc
Confidence            5555555555555543    1221       1122344555555544433332100   0000000 0000000011355


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          349 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       349 ~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      |++++.+++.|++..+..+...+++.+.+|++++|.++|++.+...+|..+++.+...+.
T Consensus       335 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        335 WRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            667788899999999999999999999999999999999999999999999888877664

>PRK12382 putative transporter; Provisional

Probab=98.86  E-value=8.6e-07  Score=91.09  Aligned_cols=77  Identities=10%  Similarity=0.174  Sum_probs=62.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      ....++++-.+.++|.+..-|...+.+.|.++++       +|.++.+++..+.++|..+++.+.+++.+.+||+..+.+
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK-------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            4556777778888999988888888888887542       478889999999999999999999999888999877665


Q ss_pred             HHHH
Q 011875          112 PAVI  115 (475)
Q Consensus       112 ~~v~  115 (475)
                      ..+.
T Consensus       184 ~~~~  187 (392)
T PRK12382        184 TMVL  187 (392)
T ss_pred             HHHH
Confidence            5443

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.86  E-value=8.7e-07  Score=89.91  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011875           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (475)
Q Consensus        34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~  113 (475)
                      +.+++.-.+.+.+.+..-|...++..+..++++     +.+.....+.+.+.++|..+++.+.+++.+..||++.|.+.+
T Consensus        88 ~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        88 FLLLVLGVLLSSFASTANPQLFALAREHADRTG-----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            344444444555556666777777666553321     112223577888899999999999999988899999999988


Q ss_pred             HHHHHHHHHHHh
Q 011875          114 VIMLLSALSFFL  125 (475)
Q Consensus       114 v~~~~~~ivf~~  125 (475)
                      +..++..++.+.
T Consensus       163 ~~~~~~~~~~~~  174 (375)
T TIGR00899       163 LAFVLCGVLVWL  174 (375)
T ss_pred             HHHHHHHHHHHH
Confidence            877766655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.85  E-value=3.8e-07  Score=92.36  Aligned_cols=86  Identities=19%  Similarity=0.044  Sum_probs=68.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC-------
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-------  104 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g-------  104 (475)
                      +.+.++....+++++.+...+...+++.|.+++       ++|..+.++...+.++|.++++.+.+++....|       
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~  154 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT  154 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            344455555566778888889999999998854       258889999999999999999999988877777       


Q ss_pred             -ccchhHHHHHHHHHHHHHHH
Q 011875          105 -WKVGFGVPAVIMLLSALSFF  124 (475)
Q Consensus       105 -~~~~F~i~~v~~~~~~ivf~  124 (475)
                       |+..|.+.++..+++.++.+
T Consensus       155 ~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       155 LWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH
Confidence             99999999987777665544

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.82  E-value=2.1e-06  Score=91.51  Aligned_cols=86  Identities=14%  Similarity=0.093  Sum_probs=69.8

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec-cCCccchh
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGF  109 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~-~~g~~~~F  109 (475)
                      .+.+.+++...+.+++.+...+...++..|.++++       +|.++..+.-.+.++|.++++.+..++.+ ..||+..|
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~-------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f  177 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE-------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMY  177 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence            34566777777888889999999999999998643       47788888899999999999999888887 57999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011875          110 GVPAVIMLLSALSF  123 (475)
Q Consensus       110 ~i~~v~~~~~~ivf  123 (475)
                      .+.++.+++..+..
T Consensus       178 ~i~a~l~ll~~l~~  191 (491)
T PRK11010        178 WLMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99887766665443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.82  E-value=3.2e-06  Score=86.02  Aligned_cols=87  Identities=17%  Similarity=0.148  Sum_probs=73.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      ..+.++++..+.++|.+...+...+++.|.+++       ++|.+.+.+++...++|..+++.+.+++.+..||+..|.+
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  164 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF  164 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            355677778888999999999999999998864       3588999999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 011875          112 PAVIMLLSALSFFL  125 (475)
Q Consensus       112 ~~v~~~~~~ivf~~  125 (475)
                      .++..++..+..+.
T Consensus       165 ~~~~~~~~~~~~~~  178 (385)
T TIGR00710       165 LSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777766665544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.80  E-value=7.1e-07  Score=95.14  Aligned_cols=87  Identities=13%  Similarity=0.035  Sum_probs=72.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++-.+.++|.|++.|...+.+.+.+.++      ++|.+++.++....++|..++|.+.+++.++.||++.|.+
T Consensus        93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i  166 (495)
T PRK14995         93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI  166 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence            4667788888999999999998888888877543      3689999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSFF  124 (475)
Q Consensus       112 ~~v~~~~~~ivf~  124 (475)
                      .....++.+++.+
T Consensus       167 ~~~~~~~~~~l~~  179 (495)
T PRK14995        167 NVPIVLVVMGLTA  179 (495)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766555554433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.79  E-value=2.7e-06  Score=86.67  Aligned_cols=86  Identities=16%  Similarity=0.182  Sum_probs=71.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.+++...+.+++.+...+...++..|.+++       ++|.+.+++.+.+.++|..+++.+.+++.+..||+..|.+
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  150 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWV  150 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            345667777888999999999999999998754       2488999999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSFF  124 (475)
Q Consensus       112 ~~v~~~~~~ivf~  124 (475)
                      .++..++..+...
T Consensus       151 ~~~~~~~~~~~~~  163 (377)
T PRK11102        151 LALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.78  E-value=9.7e-07  Score=93.10  Aligned_cols=86  Identities=14%  Similarity=0.116  Sum_probs=72.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +...++++..+.++|.|...|...+++.|.+++       ++|..++.+++.+.++|..+++.+.+++.+++||++.|.+
T Consensus        89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~  161 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI  161 (485)
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence            456677888889999999999999999999864       3588899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSFF  124 (475)
Q Consensus       112 ~~v~~~~~~ivf~  124 (475)
                      .+...++.++..+
T Consensus       162 ~~~~~~~~~~~~~  174 (485)
T TIGR00711       162 NVPIGIIVVVVAF  174 (485)
T ss_pred             hhHHHHHHHHHHH
Confidence            7766555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.78  E-value=1.3e-06  Score=90.98  Aligned_cols=111  Identities=13%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011875          267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  346 (475)
Q Consensus       267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v  346 (475)
                      +..+..+..++..|+..++    .+|.++       .+-+.+|+++.+++++...+..                     -
T Consensus       262 ~~~~~~i~~ii~~~~~~~l----~~r~g~-------~~~~~~~~~~~~~~~~~~~~~~---------------------~  309 (437)
T TIGR00792       262 MGSIAIVAGLIGVLLFPRL----VKKFGR-------KILFAGGILLMVLGYLIFFFAG---------------------S  309 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHcc---------------------h
Confidence            3344444555555555443    344322       2345667766666665443321                     1


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDD  409 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-------~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~  409 (475)
                      +.++.+...++.+++.....+...++..+.+|       ++.+|.++|++.+...+|..+++.+...+-+
T Consensus       310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       310 NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23444566688889998888888888888765       6678999999999999999888888776543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.77  E-value=1e-06  Score=93.41  Aligned_cols=79  Identities=18%  Similarity=0.220  Sum_probs=66.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.+++.|+..+...+++.|.+++       ++|...+.+++.+.++|.++++.+.+++.+..||++.|.+
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~  179 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI  179 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            456677788888999999999999999998864       3578889999999999999999999999989999999987


Q ss_pred             HHHHHH
Q 011875          112 PAVIML  117 (475)
Q Consensus       112 ~~v~~~  117 (475)
                      .++..+
T Consensus       180 ~~~~~~  185 (496)
T PRK03893        180 GILPII  185 (496)
T ss_pred             HHHHHH
Confidence            554433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.77  E-value=1.4e-06  Score=91.99  Aligned_cols=84  Identities=17%  Similarity=0.136  Sum_probs=66.6

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCC
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLG  104 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g  104 (475)
                      ...++++-.+.++|.|+.-|...++++|.++++       +|..+..++-.+..+|.++++.++..+.        +..|
T Consensus       120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~-------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  192 (479)
T PRK10077        120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH-------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG  192 (479)
T ss_pred             HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence            456677788999999999999999999999753       4777888888999999999876654432        4579


Q ss_pred             ccchhHHHHHHHHHHHHHH
Q 011875          105 WKVGFGVPAVIMLLSALSF  123 (475)
Q Consensus       105 ~~~~F~i~~v~~~~~~ivf  123 (475)
                      |++.|.+.++..++.++..
T Consensus       193 Wr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        193 WRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9999998877776665443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.76  E-value=5.9e-08  Score=99.19  Aligned_cols=88  Identities=14%  Similarity=0.249  Sum_probs=75.7

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC-ccchh
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGF  109 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g-~~~~F  109 (475)
                      .+.+.+.+.-.++++|-..+-|-.+++++|.+++       ++|.+.|.||||+|++|+.+|..+.+++.+..+ |+++|
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-------~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af  191 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-------DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAF  191 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcc-------hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEE
Confidence            4567777788899999999999999999999976       369999999999999999999989899988777 99999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011875          110 GVPAVIMLLSALSFFL  125 (475)
Q Consensus       110 ~i~~v~~~~~~ivf~~  125 (475)
                      .+.++.+++..++.++
T Consensus       192 ~~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  192 RGSAVLGVIVGLLVFL  207 (493)
T ss_pred             EeehHHHHHHHHHHHh
Confidence            9888777766555433

>TIGR00895 2A0115 benzoate transport

Probab=98.75  E-value=2.2e-06  Score=87.25  Aligned_cols=85  Identities=20%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.|...+...+++.|.+++       ++|...++++..+.++|..+++.+.+++.+..||+..|.+
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  176 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV  176 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence            355677888899999999999999999998854       2478899999999999999999999999989999999998


Q ss_pred             HHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSF  123 (475)
Q Consensus       112 ~~v~~~~~~ivf  123 (475)
                      .++..++..++.
T Consensus       177 ~~~~~~~~~~~~  188 (398)
T TIGR00895       177 GGIAPLLLLLLL  188 (398)
T ss_pred             hhhHHHHHHHHH
Confidence            865544444443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.74  E-value=1.3e-07  Score=103.40  Aligned_cols=252  Identities=8%  Similarity=-0.100  Sum_probs=181.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccc----
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKV----  107 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~----  107 (475)
                      +.+...+.+..++++.+|.+++.+++.++|.+..++    +++++.+++|||..+.+.+.+.+..........+..    
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~----~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~  156 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE----RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC  156 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            466677789999999999999999999999988775    777889999999999999987644444442223443    


Q ss_pred             ---hhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchh
Q 011875          108 ---GFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF  184 (475)
Q Consensus       108 ---~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (475)
                         -++..++.+++.++.++.+...++..++.+.+...+.+++.......+.                          ++
T Consensus       157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~--------------------------~~  210 (654)
T TIGR00926       157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK--------------------------RF  210 (654)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH--------------------------hh
Confidence               2347888888999999999877777677665555556665444332110                          00


Q ss_pred             hhhhhhccCCCCCCCCCCCCCCCCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHhhcCchHH-HHHHHhcCCCCCCCce
Q 011875          185 LNKACMAKHPEQDLTPDGRASNPNSLC--TVEQVEELKALIKVIPIWSTGIMIAVTISQSSFL-VLQASSMDRHVTPNFE  261 (475)
Q Consensus       185 ld~a~~~~~~~~~~~~~g~~~~~~~~~--~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q~s~~-~~q~~~~~~~~~~~~~  261 (475)
                          .. ..        ......|..+  ...++++++...+++.++...+.+|+.+.|.... ..|..++++..+ .+.
T Consensus       211 ----~~-~~--------~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~  276 (654)
T TIGR00926       211 ----ST-RS--------EHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVG  276 (654)
T ss_pred             ----cc-CC--------cccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccC
Confidence                00 00        0000112111  2233567899999999999999999988663332 133355776653 554


Q ss_pred             ecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011875          262 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSI  330 (475)
Q Consensus       262 ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~  330 (475)
                      ..+...+.++++-.++++|+...+-+|++++.+++   -.+++++.-+.+.+.++++.+++++..+...
T Consensus       277 g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       277 GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667889999999999999999999999998654   6788999999999999999999998876654

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.74  E-value=2.2e-06  Score=89.69  Aligned_cols=81  Identities=10%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~  112 (475)
                      .+.+++...+.+++.|..-+...+.+.+.+++       ++|.....+++.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus       111 ~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~  183 (434)
T PRK11663        111 LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA  183 (434)
T ss_pred             HHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            34455555667788888888899999999864       35888999999999999999999999998899999999987


Q ss_pred             HHHHHHHH
Q 011875          113 AVIMLLSA  120 (475)
Q Consensus       113 ~v~~~~~~  120 (475)
                      ++..++..
T Consensus       184 ~i~~~~~~  191 (434)
T PRK11663        184 GIIAIVVG  191 (434)
T ss_pred             HHHHHHHH
Confidence            76655443

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.71  E-value=3.3e-06  Score=87.08  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=50.0

Q ss_pred             cccccchhhhhccCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHHHHHh
Q 011875           49 GIRSSSLAFGAEQLDKGDGTKSKGALQSYF-SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL  125 (475)
Q Consensus        49 ~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F-~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~~~~~ivf~~  125 (475)
                      ..-|...++..|..++++      +....+ ++...+.++|..+++.+.+++.++.||+..|.+.++..++..+..+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        121 TANPQMFALAREHADKTG------REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             hhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            445556666666443221      122233 58889999999999999999998999999999888766665554433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.69  E-value=1.4e-05  Score=82.10  Aligned_cols=84  Identities=17%  Similarity=0.080  Sum_probs=68.4

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~  112 (475)
                      ...++++..+.++|.|...+...++..|.+++       ++|.+..++.+...++|..+++.+.+++.+..||+..|.+.
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            44566667788888888888888999998864       35889999999999999999999988888889999999988


Q ss_pred             HHHHHHHHHHH
Q 011875          113 AVIMLLSALSF  123 (475)
Q Consensus       113 ~v~~~~~~ivf  123 (475)
                      ++..++..+..
T Consensus       164 ~~~~~i~~~~~  174 (392)
T PRK10473        164 AAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHH
Confidence            77666655543

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.67  E-value=2.5e-06  Score=88.61  Aligned_cols=78  Identities=14%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++-.+.++|.|..-+...++..|.++++       +|.++.+++..+.++|.++++.+.+++.+.+||+..|.+
T Consensus       105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH-------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh-------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            4567778888999999999999999999988653       478888999999999999999999999889999999998


Q ss_pred             HHHHH
Q 011875          112 PAVIM  116 (475)
Q Consensus       112 ~~v~~  116 (475)
                      ..+..
T Consensus       178 ~~~~~  182 (426)
T PRK12307        178 GLLPV  182 (426)
T ss_pred             HHHHH
Confidence            65443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.67  E-value=8.7e-06  Score=84.13  Aligned_cols=83  Identities=18%  Similarity=0.284  Sum_probs=70.8

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~  110 (475)
                      .+.+.+++.-.+.+++.|...|...++..|.+++       ++|..+..+++.+.|+|..+++.+.+++.+..||+..|.
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~  178 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN  178 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            3466777888899999999999999999998854       358889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 011875          111 VPAVIMLLSA  120 (475)
Q Consensus       111 i~~v~~~~~~  120 (475)
                      +.++..++.+
T Consensus       179 ~~~~l~~~~~  188 (394)
T PRK10213        179 AAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHH
Confidence            8776555443

>TIGR00898 2A0119 cation transport protein

Probab=98.66  E-value=9.1e-06  Score=86.51  Aligned_cols=83  Identities=19%  Similarity=0.185  Sum_probs=65.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.|+..+...+++.|.++++       +|.....++..+.++|.++++.+...+.+   |++.|.+
T Consensus       179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~  248 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK-------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA  248 (505)
T ss_pred             cHHHHHHHHHHHHhhccchHHHHHHHhheecChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence            3456777778889999999999999999998653       46777788888999999999988766663   9999998


Q ss_pred             HHHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSFF  124 (475)
Q Consensus       112 ~~v~~~~~~ivf~  124 (475)
                      .++..++..+..+
T Consensus       249 ~~i~~~~~~~~~~  261 (505)
T TIGR00898       249 VSLPTFLFFLLSW  261 (505)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877666655543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.66  E-value=1.3e-05  Score=84.65  Aligned_cols=303  Identities=8%  Similarity=0.009  Sum_probs=162.8

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhe--ecc---------
Q 011875           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--QDN---------  102 (475)
Q Consensus        34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l--~~~---------  102 (475)
                      ..+.+++.+.-++.....+...++++|+.+++++     +++.++.|+.+.+|+|+.+++.++++.  .+.         
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~  189 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC  189 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence            4556666677778888888999999999987652     457899999999999999999887764  111         


Q ss_pred             ----CCccchhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccC
Q 011875          103 ----LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMP  178 (475)
Q Consensus       103 ----~g~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (475)
                          .+++..|.++++.++++.++-.+.-|.+...+++..+.                        ..+.......    
T Consensus       190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~------------------------~~~~~~~~~~----  241 (477)
T TIGR01301       190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN------------------------SEAAPPSKHG----  241 (477)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh------------------------hhcccccccc----
Confidence                15678999999988888877665433221100000000                        0000000000    


Q ss_pred             CccchhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCC-C
Q 011875          179 SENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRH-V  256 (475)
Q Consensus       179 ~~~~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~-~  256 (475)
                       ....+-+.-+                        .-++--|.+.+++..-++.=+=|..+-+ .|.++-|.-.-..+ -
T Consensus       242 -~~~~~~~i~~------------------------~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~  296 (477)
T TIGR01301       242 -EEAFFGELFG------------------------AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ  296 (477)
T ss_pred             -hhhhHHHHHH------------------------HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc
Confidence             0000000000                        0001112233333333222223333334 56665543211100 0


Q ss_pred             CC----CceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 011875          257 TP----NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRM-GIGLLFSTASMTAWAIVEAARRSIA  331 (475)
Q Consensus       257 ~~----~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki-~~G~~l~~ls~~~~~~~~~~~~~~~  331 (475)
                      ..    +... ..+-..+|.+.-.    ++..++-++.++.+       ..++. .++.++.++|+....++.....+..
T Consensus       297 ~~~y~~gvr~-G~~~l~~~s~~~~----i~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~  364 (477)
T TIGR01301       297 GAKYDDGVRA-GAFGLMLNSVVLG----ITSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVAKNSR  364 (477)
T ss_pred             hhHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            00    0000 0122223333322    33333333334432       11333 6888899999888776642100000


Q ss_pred             hhcCCCCCccccccch-HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc--hhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          332 INEGISDDLRAVVQMS-AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK--SMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       332 ~~~g~~~~~~~~~~vs-~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~--~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++. +..- ..+.. .++.+..+.++|++=......=++++++..|+  +-+|.+||+...+..+.-.+..+....+.
T Consensus       365 ~~~~~-~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~  442 (477)
T TIGR01301       365 YYDGD-GESL-PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWD  442 (477)
T ss_pred             ccccc-cccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            00000 0000 01122 36667788999999999999999999999995  55699999999999999988887666544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.66  E-value=1.3e-06  Score=92.52  Aligned_cols=83  Identities=14%  Similarity=0.069  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHH
Q 011875           36 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI  115 (475)
Q Consensus        36 ~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~  115 (475)
                      ..+.+.+++++.+.......++..|+.+ +++    +......++.|.+.++|.++++.+.+++.+.+||+..|.+.++.
T Consensus       123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~----~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l  197 (468)
T TIGR00788       123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESP----SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL  197 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC----CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            3346788999999999999999999998 333    23556778999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 011875          116 MLLSALSF  123 (475)
Q Consensus       116 ~~~~~ivf  123 (475)
                      .++..+..
T Consensus       198 ~ll~~~~~  205 (468)
T TIGR00788       198 LLLQLFVS  205 (468)
T ss_pred             HHHHHHHH
Confidence            77774443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.64  E-value=4.8e-06  Score=97.53  Aligned_cols=63  Identities=10%  Similarity=0.066  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN  102 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~  102 (475)
                      .+.+++...+.+++.|.+-|...++++|.++++       +|..+++++..+.++|.++++.+++++.+.
T Consensus       103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE-------NLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc-------cchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567778888899999999999999999998753       488899999999999999999999988755

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.64  E-value=1.6e-05  Score=82.19  Aligned_cols=77  Identities=22%  Similarity=0.265  Sum_probs=62.4

Q ss_pred             HHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHH
Q 011875           37 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIM  116 (475)
Q Consensus        37 ~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~  116 (475)
                      ++...+.++|.|++.|...+++.|.+++       ++|.++.++.....++|..+||.+++++.+. .|...|.+.+...
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~  163 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY  163 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            4455678999999999999999999975       3589999999999999999999999998764 4777777766655


Q ss_pred             HHHHH
Q 011875          117 LLSAL  121 (475)
Q Consensus       117 ~~~~i  121 (475)
                      +++.+
T Consensus       164 ~~~~~  168 (393)
T PRK11195        164 LLAAL  168 (393)
T ss_pred             HHHHH
Confidence            54443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.63  E-value=2.4e-06  Score=86.18  Aligned_cols=85  Identities=19%  Similarity=0.123  Sum_probs=64.1

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.|...+...+...+.+++        +|.....++..+.++|+++++.+.+.+.+..||+..|.+
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~  161 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD--------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY  161 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc--------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence            455667777788888888777777777776632        367888999999999998766566666667899999998


Q ss_pred             HHHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSFF  124 (475)
Q Consensus       112 ~~v~~~~~~ivf~  124 (475)
                      .++..++..+..+
T Consensus       162 ~~~~~~~~~~~~~  174 (377)
T TIGR00890       162 MGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877666655443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.62  E-value=1.8e-05  Score=81.39  Aligned_cols=84  Identities=15%  Similarity=0.115  Sum_probs=65.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.|...+...++..|.+++       +++..+..++..+.++|..+++.+.+++.+..||+..|.+
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~  167 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF  167 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            355667777788888888777777888887754       2467788888899999999999999999888999999998


Q ss_pred             HHHHHHHHHHH
Q 011875          112 PAVIMLLSALS  122 (475)
Q Consensus       112 ~~v~~~~~~iv  122 (475)
                      .++..++..+.
T Consensus       168 ~~~~~~~~~~~  178 (394)
T PRK11652        168 LLLLGAGVTFS  178 (394)
T ss_pred             HHHHHHHHHHH
Confidence            77665544433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.61  E-value=1.2e-05  Score=83.55  Aligned_cols=85  Identities=14%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +...++++..+.++|.|..-+...+...|.|+++       ++.+...++..+.++|..+++.+++++.+..||++.|.+
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT-------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            4566777788888888876666667778887653       477889999999999999999999999888899999998


Q ss_pred             HHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSF  123 (475)
Q Consensus       112 ~~v~~~~~~ivf  123 (475)
                      .++..+++.+..
T Consensus       176 ~~~~~~i~~~~~  187 (413)
T PRK15403        176 IAVMGLIAFVGL  187 (413)
T ss_pred             HHHHHHHHHHHH
Confidence            887777665543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.60  E-value=3.7e-05  Score=79.49  Aligned_cols=84  Identities=20%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~  110 (475)
                      +.+.+++...+.++..+...|...++..|..+++       +|.++..+..++.++|.++++.+..++.+. .||+..|.
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~-------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~  165 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE-------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL  165 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence            4555555556677888889999999999987543       478888888999999999999888888765 59999999


Q ss_pred             HHHHHHHHHHHH
Q 011875          111 VPAVIMLLSALS  122 (475)
Q Consensus       111 i~~v~~~~~~iv  122 (475)
                      +.++..++..+.
T Consensus       166 i~a~~~l~~~l~  177 (402)
T PRK11902        166 LMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHH
Confidence            988776665554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.60  E-value=1.7e-05  Score=81.41  Aligned_cols=72  Identities=6%  Similarity=-0.091  Sum_probs=56.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~  110 (475)
                      +.+.++++..+.++|.|.+.|...+...+.+++       ++|.+.+++++.+.|+|..+++.+.+++.+...+...+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  164 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV  164 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence            456777788888999999988887777777643       357889999999999999999999999876654444443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.59  E-value=2.3e-05  Score=87.13  Aligned_cols=85  Identities=21%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec----------
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD----------  101 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~----------  101 (475)
                      ..+.++++..+.++|.|+..|...+++++.+++       ++|...+++...+..+|.++++.++..+..          
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~  326 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGS  326 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccc
Confidence            356778888899999999999999999998864       357788888888889999988866544332          


Q ss_pred             ---cCCccchhHHHHHHHHHHHHHH
Q 011875          102 ---NLGWKVGFGVPAVIMLLSALSF  123 (475)
Q Consensus       102 ---~~g~~~~F~i~~v~~~~~~ivf  123 (475)
                         ..+|++.|.+.++..++.++.+
T Consensus       327 ~~~~~gWR~l~~i~~lp~ll~ll~~  351 (742)
T TIGR01299       327 AYQFHSWRVFVIVCAFPCVFAIGAL  351 (742)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHH
Confidence               2368888888777666655443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.57  E-value=3.1e-06  Score=88.00  Aligned_cols=136  Identities=10%  Similarity=0.102  Sum_probs=85.3

Q ss_pred             ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011875          266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  345 (475)
Q Consensus       266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (475)
                      .+.+++.+...+..++..++    .+|.+.       .+.+.++.++.+++++..++.                      
T Consensus       266 ~~~~~~~~~~~~~~~~~g~l----~dr~g~-------~~~~~~~~~l~~~~~~l~~~~----------------------  312 (420)
T PRK09528        266 YLNSFQVFLEALIMFFAPFI----INRIGA-------KNALLLAGTIMAVRIIGSGFA----------------------  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhCc-------chhhHHHHHHHHHHHHHHHhc----------------------
Confidence            44455555555555555443    344322       233566666666666554432                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  424 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~-~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l  424 (475)
                      .++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+...+.+..      +      
T Consensus       313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G------  380 (420)
T PRK09528        313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------G------  380 (420)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------C------
Confidence            2356677778889998888888888999999999999987655 56667788888887776654211      1      


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHH
Q 011875          425 NKGHYDYYYWLLTALSMANFLYYLAC  450 (475)
Q Consensus       425 n~~~~~~~f~~la~l~~~~~~~~~~~  450 (475)
                          ....|..++++.++..++.+..
T Consensus       381 ----~~~~f~~~~~~~~i~~~~~~~~  402 (420)
T PRK09528        381 ----FQGTYLILGGIVLLFTLISVFT  402 (420)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHHH
Confidence                2345666677666555544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.57  E-value=2.5e-05  Score=80.15  Aligned_cols=84  Identities=11%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.+++.|...+...++..+.+++       ++|.+.+.++..+.++|..+++.+.+++.+..||++.|.+
T Consensus        90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            456777888888999898888777777777644       2467788888999999999999999999888999999999


Q ss_pred             HHHHHHHHHHH
Q 011875          112 PAVIMLLSALS  122 (475)
Q Consensus       112 ~~v~~~~~~iv  122 (475)
                      .++..++..+.
T Consensus       163 ~~~~~~~~~~~  173 (382)
T PRK10091        163 IAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHH
Confidence            88766655543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.57  E-value=1.1e-05  Score=84.35  Aligned_cols=306  Identities=12%  Similarity=0.097  Sum_probs=170.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee----ccC---C
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----DNL---G  104 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~----~~~---g  104 (475)
                      +...+++...+..++...+.-+-.+++.|..++++      +|.+..++-.++.++|.++...+.+.+-    +..   +
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~------~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~  175 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD------ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNG  175 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchH
Confidence            33445666667789999999999999999987654      4788888888888888876555555433    221   5


Q ss_pred             ccchhHHHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchh
Q 011875          105 WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF  184 (475)
Q Consensus       105 ~~~~F~i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (475)
                      |.+.+.+.++..++..++.....|. +++++..+                   .+.                     .++
T Consensus       176 ~~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~-------------------~~~---------------------~~~  214 (428)
T PF13347_consen  176 YRWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ-------------------EKK---------------------ISL  214 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhhhheeee-cccccccc-------------------ccc---------------------ccc
Confidence            7776666666666555555444332 00000000                   000                     000


Q ss_pred             hhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHh-cCCCCCCCcee
Q 011875          185 LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASS-MDRHVTPNFEI  262 (475)
Q Consensus       185 ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~-~~~~~~~~~~i  262 (475)
                      .+..+.                        -.++ |.+.   .+++...+.+....- .+...+...+ +..+ .     
T Consensus       215 ~~~~~~------------------------~~~n-r~~~---~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~-----  260 (428)
T PF13347_consen  215 RDSLRS------------------------LFRN-RPFR---ILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G-----  260 (428)
T ss_pred             ccchhh------------------------hccc-chHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h-----
Confidence            000000                        0001 1222   233333333333332 2222222222 2211 0     


Q ss_pred             cCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 011875          263 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA  342 (475)
Q Consensus       263 p~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~  342 (475)
                      -.+.+..+..+..++..|+..++    .+|.+++       +-+..|.++.+++.+...++.                  
T Consensus       261 ~~~~~~~~~~~~~~v~~~~~~~l----~~r~gk~-------~~~~~~~~~~~~~~~~~~~~~------------------  311 (428)
T PF13347_consen  261 LISIFMLIFFVASIVGSPLWGRL----SKRFGKK-------KVYIIGLLLAALGFLLLFFLG------------------  311 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH----HHHccce-------eehhhhHHHHHHHHHHHHHHH------------------
Confidence            11233334444455555655443    4554333       346678888888777666553                  


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCC
Q 011875          343 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGG  415 (475)
Q Consensus       343 ~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-------~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~  415 (475)
                        ..+.++.++..++.+++-....+...++..+..+       ++..|.++|++.+..-+|..+++.+...+-...    
T Consensus       312 --~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~----  385 (428)
T PF13347_consen  312 --PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV----  385 (428)
T ss_pred             --hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh----
Confidence              1467788888899999999888888888888776       456799999999999999999988777654332    


Q ss_pred             CCCCCCC--CCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011875          416 NGGWIPS--NINKGHYDYYYWLLTALSMANFLYYLACCKAYG  455 (475)
Q Consensus       416 ~~~w~~~--~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~  455 (475)
                        ++-++  +.++.........++.+..+..++-.++.++|+
T Consensus       386 --Gy~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~  425 (428)
T PF13347_consen  386 --GYDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYP  425 (428)
T ss_pred             --CcCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence              22111  122222334444455555444444445556654

>PRK11043 putative transporter; Provisional

Probab=98.56  E-value=2.2e-05  Score=80.89  Aligned_cols=85  Identities=16%  Similarity=0.151  Sum_probs=68.1

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.+...+...++..|.++++       ++.+.++......++|..+++.+.+++.+.+||+..|.+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~  165 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ-------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT  165 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            3456667777888888888888888888888642       467788888889999999999999999989999999998


Q ss_pred             HHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSF  123 (475)
Q Consensus       112 ~~v~~~~~~ivf  123 (475)
                      .++..++..+..
T Consensus       166 ~~~~~~~~~~~~  177 (401)
T PRK11043        166 LFAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHHH
Confidence            877766665543

>PRK09848 glucuronide transporter; Provisional

Probab=98.55  E-value=1.2e-05  Score=84.49  Aligned_cols=87  Identities=14%  Similarity=0.060  Sum_probs=65.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCch-
Q 011875          302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS-  380 (475)
Q Consensus       302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~-  380 (475)
                      ..+-+.+|+++.+++.+...+..                    ..+.++.+...++.++|+.+..+...++..+.+|++ 
T Consensus       293 ~~~~~~~g~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~  352 (448)
T PRK09848        293 KKNTFLIGALLGTCGYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE  352 (448)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            34556778777777765443210                    134555666778899999999999999999988764 


Q ss_pred             ------hhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          381 ------MSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       381 ------~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                            ..|.++|++.+...+|..+|+.+...+-
T Consensus       353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  5699999999999999999888776543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.53  E-value=8.3e-06  Score=86.53  Aligned_cols=83  Identities=8%  Similarity=0.079  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee----c-----cC
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----D-----NL  103 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~----~-----~~  103 (475)
                      .+.++++..+.++|.+..-+ ....+++.++++       +|..+..+.+...|+|+.+++.+.+.+.    +     ..
T Consensus       124 ~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~-------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~  195 (476)
T PLN00028        124 ATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK-------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT  195 (476)
T ss_pred             HHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh-------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence            44555666677777776543 445677777542       4777888888888888888766655442    1     25


Q ss_pred             CccchhHHHHHHHHHHHHHH
Q 011875          104 GWKVGFGVPAVIMLLSALSF  123 (475)
Q Consensus       104 g~~~~F~i~~v~~~~~~ivf  123 (475)
                      ||+..|.+.++..++..+..
T Consensus       196 gWr~~f~i~g~l~l~~~l~~  215 (476)
T PLN00028        196 AWRIAFFVPGLLHIIMGILV  215 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            89999999887666554443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.52  E-value=2.6e-05  Score=82.08  Aligned_cols=83  Identities=11%  Similarity=0.039  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhhheeccCCccchhHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~-~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      .+.+++...+.+++.|...|.......+.+++       ++|..+.++++.+.++|. ++++++...+....||+.+|.+
T Consensus       120 ~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i  192 (452)
T PRK11273        120 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM  192 (452)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence            45566667788888998888888888888754       247889999999999986 5566543333334599999998


Q ss_pred             HHHHHHHHHHH
Q 011875          112 PAVIMLLSALS  122 (475)
Q Consensus       112 ~~v~~~~~~iv  122 (475)
                      .++..++..++
T Consensus       193 ~~~~~~~~~~l  203 (452)
T PRK11273        193 PAFAAILVALF  203 (452)
T ss_pred             HHHHHHHHHHH
Confidence            87766664443

>PRK03699 putative transporter; Provisional

Probab=98.51  E-value=5.2e-05  Score=78.13  Aligned_cols=85  Identities=12%  Similarity=0.111  Sum_probs=66.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhe-eccCCccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI-QDNLGWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l-~~~~g~~~~F~  110 (475)
                      +.+.++++..+.+++.|...+...+.+.+.++++       +|.......+...++|+.+++.+.+++ .++.||+..|.
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~  166 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK-------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA  166 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            3456777778889999999999999999988542       366777778888899999999888776 45679999999


Q ss_pred             HHHHHHHHHHHHH
Q 011875          111 VPAVIMLLSALSF  123 (475)
Q Consensus       111 i~~v~~~~~~ivf  123 (475)
                      +.++..++..+..
T Consensus       167 ~~~~~~~~~~~~~  179 (394)
T PRK03699        167 CIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777666555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.51  E-value=7.4e-06  Score=83.08  Aligned_cols=81  Identities=22%  Similarity=0.286  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCCcc
Q 011875           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK  106 (475)
Q Consensus        35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g~~  106 (475)
                      .++++..+.++|.|..-+...+++.|.++++       +|.....++..+.++|.++++.+...+.        +..+|+
T Consensus        98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~  170 (394)
T TIGR00883        98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPG-------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR  170 (394)
T ss_pred             HHHHHHHHHHhhccccccccHHHhhhcCCcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence            4666777888999999999999999987643       4778889999999999999987766543        357899


Q ss_pred             chhHHHHHHHHHHHHH
Q 011875          107 VGFGVPAVIMLLSALS  122 (475)
Q Consensus       107 ~~F~i~~v~~~~~~iv  122 (475)
                      +.|.+.++..+++..+
T Consensus       171 ~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       171 IPFLVSAVLVLIGLYL  186 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999877766555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.51  E-value=4.3e-05  Score=78.35  Aligned_cols=83  Identities=16%  Similarity=0.009  Sum_probs=65.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +...++++-.+.++|.|.. ++..+..++.+++       ++|.+..+++..+.++|..+++.+.+++.+..||+..|.+
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~  149 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP  149 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            4567788888889999865 4555555777753       3589999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH
Q 011875          112 PAVIMLLSALS  122 (475)
Q Consensus       112 ~~v~~~~~~iv  122 (475)
                      .++.-++..++
T Consensus       150 ~~~l~~~~~~~  160 (368)
T TIGR00903       150 IAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHHHH
Confidence            55554444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.50  E-value=3e-05  Score=80.03  Aligned_cols=82  Identities=10%  Similarity=0.054  Sum_probs=63.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC-CccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~-g~~~~F~  110 (475)
                      +...++++-.+.++|.|..-+...+.+.+.++ +       +|.....++..+.++|..+++.+.+++.++. +|+..|.
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~-------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~  167 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q-------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA  167 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            34567778889999999999999999888874 1       3678888888999999999999999887775 8988776


Q ss_pred             HHHHHHHHHHH
Q 011875          111 VPAVIMLLSAL  121 (475)
Q Consensus       111 i~~v~~~~~~i  121 (475)
                      +-++..++.+.
T Consensus       168 ~~~~~~~~~~~  178 (393)
T PRK09705        168 WWALPAVVALF  178 (393)
T ss_pred             HHHHHHHHHHH
Confidence            55444444333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.50  E-value=1e-05  Score=82.61  Aligned_cols=83  Identities=17%  Similarity=0.240  Sum_probs=68.1

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC--ccchh
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGF  109 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g--~~~~F  109 (475)
                      +.+.++++..+.++|.|...+...++..|.++++       +|..+..++..+.++|..+++.+.+.+.+..+  |+..|
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f  171 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH-------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF  171 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence            4566777888999999999999999999988653       47889999999999999999999888877666  99999


Q ss_pred             HHHHHHHHHHHH
Q 011875          110 GVPAVIMLLSAL  121 (475)
Q Consensus       110 ~i~~v~~~~~~i  121 (475)
                      .+.++..++.++
T Consensus       172 ~~~~~~~~~~~~  183 (405)
T TIGR00891       172 FISILPIIFALW  183 (405)
T ss_pred             HHHHHHHHHHHH
Confidence            887665555443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.40  E-value=1.4e-05  Score=84.37  Aligned_cols=84  Identities=18%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhHHHH
Q 011875           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPA  113 (475)
Q Consensus        35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~i~~  113 (475)
                      .+.+.-.+-+++.|...|++..+.++-.+++       +|..+.++.|-+..+|.+++.-+.+++-+. .||+..|.+-+
T Consensus       130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~-------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g  202 (466)
T KOG2532|consen  130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPN-------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG  202 (466)
T ss_pred             hhHHHHHHhHHHHhHHHhhhhceeeeECCHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence            4456667888899999999999988877653       489999999999999999998899999888 99999999877


Q ss_pred             HHHHHHHHHHHh
Q 011875          114 VIMLLSALSFFL  125 (475)
Q Consensus       114 v~~~~~~ivf~~  125 (475)
                      +.-++-.++++.
T Consensus       203 ~~g~i~~~~w~~  214 (466)
T KOG2532|consen  203 IVGLIWFILWFL  214 (466)
T ss_pred             HHHHHHHHHHHH
Confidence            665555555443

>PRK09669 putative symporter YagG; Provisional

Probab=98.40  E-value=4.7e-05  Score=79.85  Aligned_cols=61  Identities=3%  Similarity=0.010  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-------~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .++++...++.++++....+...+++.+.++       ++..|.+.|++.+...+|..+|+.+...+-
T Consensus       319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll  386 (444)
T PRK09669        319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL  386 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566688999999999999999998876       456788999998888888888887776654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.40  E-value=1.2e-05  Score=81.13  Aligned_cols=86  Identities=14%  Similarity=0.164  Sum_probs=70.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh-hhhhheeccCCccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV-TCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~-~~~~~l~~~~g~~~~F~  110 (475)
                      +.+.++++..+.+++.|...|...++..|.++++       +|..++++...+.++|..+++ ++.+.+.+..+|+..|.
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  154 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS-------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI  154 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh-------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence            4567778888889999999999999999998653       477888899999999999999 56777777889999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011875          111 VPAVIMLLSALSFF  124 (475)
Q Consensus       111 i~~v~~~~~~ivf~  124 (475)
                      +.++..++..++.+
T Consensus       155 ~~~~~~~~~~~~~~  168 (379)
T TIGR00881       155 VPGIIAIIVSLICF  168 (379)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88876666554444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.39  E-value=0.00022  Score=75.85  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCCcc
Q 011875           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK  106 (475)
Q Consensus        35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g~~  106 (475)
                      .+.++-.+.++|.|+.-|...++++|.++++       +|.....+...+.++|..++..+...+.        .++||+
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~-------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR  192 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR-------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR  192 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence            3666777889999999999999999998654       3555677778888888888765544332        268999


Q ss_pred             chhHHHHHHHH
Q 011875          107 VGFGVPAVIML  117 (475)
Q Consensus       107 ~~F~i~~v~~~  117 (475)
                      +.|.+.++..+
T Consensus       193 ~~f~i~~~~~l  203 (490)
T PRK10642        193 IPFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHHH
Confidence            99998665433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.37  E-value=0.00012  Score=76.58  Aligned_cols=79  Identities=25%  Similarity=0.423  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCCc
Q 011875           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGW  105 (475)
Q Consensus        34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g~  105 (475)
                      ..+.+.-.+.++|.|+.-|...++++|.++++       +|..+.++.+.+.+.|.++++.+...+.        ..+||
T Consensus       125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~-------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  197 (432)
T PRK10406        125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVEG-------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW  197 (432)
T ss_pred             HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence            35667777899999999999999999988653       3667788899999999999887655443        26799


Q ss_pred             cchhHHHHHHHHHH
Q 011875          106 KVGFGVPAVIMLLS  119 (475)
Q Consensus       106 ~~~F~i~~v~~~~~  119 (475)
                      +..|.+.++..++.
T Consensus       198 r~~F~i~~~~~ll~  211 (432)
T PRK10406        198 RIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999877655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.37  E-value=0.00034  Score=71.65  Aligned_cols=89  Identities=20%  Similarity=0.309  Sum_probs=76.1

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~  110 (475)
                      .+...+.++=.+.++..|.|-+-..+..++..+++       ||.++..+.+.+..+.-.+|.=++.++++.+||+..|.
T Consensus        99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~-------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~  171 (394)
T COG2814          99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG-------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL  171 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence            35677888889999999999999999999999764       58999999999999999999889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 011875          111 VPAVIMLLSALSFFLA  126 (475)
Q Consensus       111 i~~v~~~~~~ivf~~~  126 (475)
                      +-++.-++.++..+..
T Consensus       172 ~ia~l~ll~~~~~~~~  187 (394)
T COG2814         172 AIAVLALLALLLLWKL  187 (394)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8777666666555444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.35  E-value=6.2e-05  Score=79.79  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-------chhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-------~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .++++...++.+++.....+...++..+.++       ++..|.+.|.+.+..-+|..+++.+...+-
T Consensus       324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566688899999999999999999977       556777999999988888888877766554

>TIGR01272 gluP glucose/galactose transporter

Probab=98.33  E-value=0.00011  Score=73.56  Aligned_cols=87  Identities=10%  Similarity=-0.056  Sum_probs=68.1

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc--------
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------  102 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~--------  102 (475)
                      .+.+.+.+++.+++.|.+..++..++++++.-+++       ++.+..|+.-.+..+|++++|++.+.+..+        
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~-------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~   80 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIE-------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ   80 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc-------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence            46788999999999999999999999999987553       367778888888999999999998865521        


Q ss_pred             --------CCccchhHHHHHHHHHHHHHHH
Q 011875          103 --------LGWKVGFGVPAVIMLLSALSFF  124 (475)
Q Consensus       103 --------~g~~~~F~i~~v~~~~~~ivf~  124 (475)
                              .+|++.|.+-++..++..+++.
T Consensus        81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~  110 (310)
T TIGR01272        81 VATANAEAAKVHTPYLLLAGALAVLAIIFA  110 (310)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    3688999955544444444443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.32  E-value=0.00016  Score=75.47  Aligned_cols=94  Identities=12%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHh-HHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCc
Q 011875          349 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG  427 (475)
Q Consensus       349 ~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~-l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~  427 (475)
                      +.++...++.++++.+..+....++.+.+|++.||.++|+.. ...++|..+|+.+.....+...          +.+-.
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g----------~~~~~  378 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF----------AYGTF  378 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----------cccCC
Confidence            334556789999999999999999999999999999999996 5678899998888876542210          00000


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhh
Q 011875          428 HYDYYYWLLTALSMANFLYYLACCK  452 (475)
Q Consensus       428 ~~~~~f~~la~l~~~~~~~~~~~~~  452 (475)
                      ..+.-|.+.+++.++..++++++.|
T Consensus       379 ~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       379 DWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhC
Confidence            1334566666666666655555554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.30  E-value=6.7e-05  Score=77.28  Aligned_cols=62  Identities=11%  Similarity=0.139  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~-~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.+++++..++.+++.........+.+.+..|++.+++..+. +.....+|+.+++.+.....
T Consensus       306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~  368 (396)
T TIGR00882       306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY  368 (396)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH
Confidence            566677778889988877777777888888899998886665 55667888888877766654

>TIGR00896 CynX cyanate transporter

Probab=98.25  E-value=0.00014  Score=73.54  Aligned_cols=81  Identities=14%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC--Cccchh
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--GWKVGF  109 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~--g~~~~F  109 (475)
                      +.+.++++..+.++|.|...+...+...|.+++        +|.+..++++.+.++|..+++.+.+.+.+..  +|+..|
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f  157 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ--------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL  157 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            345666777888899998888888888776632        3778899999999999999998888887664  388888


Q ss_pred             HHHHHHHHHHH
Q 011875          110 GVPAVIMLLSA  120 (475)
Q Consensus       110 ~i~~v~~~~~~  120 (475)
                      .+.++..++.+
T Consensus       158 ~~~~~~~~~~~  168 (355)
T TIGR00896       158 AWWALPALLAL  168 (355)
T ss_pred             HHHHHHHHHHH
Confidence            87665544443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.23  E-value=9e-05  Score=77.61  Aligned_cols=84  Identities=10%  Similarity=0.021  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh-eeccCCccchhHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY-IQDNLGWKVGFGV  111 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~-l~~~~g~~~~F~i  111 (475)
                      ...+++...+.+++.|..-+.....+.|.++++       +|..++++++.+.++|..+++.+.+. +....+|+.+|.+
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~-------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~  190 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS-------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF  190 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc-------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence            345566677788888888888888889887653       47899999999999999998877664 4445799999999


Q ss_pred             HHHHHHHHHHHH
Q 011875          112 PAVIMLLSALSF  123 (475)
Q Consensus       112 ~~v~~~~~~ivf  123 (475)
                      .++..++..++.
T Consensus       191 ~~~~~~i~~~~~  202 (438)
T TIGR00712       191 PAICAIIVALFA  202 (438)
T ss_pred             HHHHHHHHHHHH
Confidence            887766655443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00897 2A0118 polyol permease family

Probab=98.23  E-value=0.00064  Score=70.25  Aligned_cols=73  Identities=15%  Similarity=0.186  Sum_probs=53.0

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhhheeccCCccchhHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~-~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      ...+++...+.++|.+..-+...+.+.+.+++       ++|.++..++..+.++|. .+++.+.+++.+..||...+..
T Consensus       105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            44555566666777777766677777776654       358999999999999996 6788888888888886544443


Q ss_pred             H
Q 011875          112 P  112 (475)
Q Consensus       112 ~  112 (475)
                      .
T Consensus       178 ~  178 (402)
T TIGR00897       178 A  178 (402)
T ss_pred             H
Confidence            3

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=98.21  E-value=0.00054  Score=71.84  Aligned_cols=77  Identities=18%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee--------ccCCcc
Q 011875           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK  106 (475)
Q Consensus        35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~--------~~~g~~  106 (475)
                      .+.+.-.+.++|.|+.-|...++..+.++++       +|....+....+.++|.+++..+..++.        +.+||+
T Consensus       127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~-------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr  199 (438)
T PRK09952        127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKN-------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR  199 (438)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHhCCCC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence            4556667889999999999999999987653       3566677788888999888876655543        357999


Q ss_pred             chhHHHHHHHHH
Q 011875          107 VGFGVPAVIMLL  118 (475)
Q Consensus       107 ~~F~i~~v~~~~  118 (475)
                      ..|.+.++..++
T Consensus       200 ~~f~~~~~~~l~  211 (438)
T PRK09952        200 IPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHHH
Confidence            999988765443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.18  E-value=0.00037  Score=72.86  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhe--------eccCCcc
Q 011875           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--------QDNLGWK  106 (475)
Q Consensus        35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l--------~~~~g~~  106 (475)
                      .+.++-.+.++|.|..-|+..++.+|.++++       +|.+...++..+.|+|..+++.+.+.+        .+..||+
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~-------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr  191 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG-------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWR  191 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchH
Confidence            3566677888999999999999999998653       477777887777777777766655544        2478999


Q ss_pred             chhHHHHH
Q 011875          107 VGFGVPAV  114 (475)
Q Consensus       107 ~~F~i~~v  114 (475)
                      ..|.+..+
T Consensus       192 ~~f~~~~~  199 (434)
T PRK15075        192 IPFLIGCL  199 (434)
T ss_pred             HHHHHHHH
Confidence            99987543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.18  E-value=0.00062  Score=69.93  Aligned_cols=52  Identities=13%  Similarity=0.011  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHHHHHh
Q 011875           74 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL  125 (475)
Q Consensus        74 ~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~v~~~~~~ivf~~  125 (475)
                      +..+-....++..+|.+++..+.+++.+++||+..|.+.++..++..+..+.
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677779999999988889999999999999998887766655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.17  E-value=0.00018  Score=76.10  Aligned_cols=84  Identities=10%  Similarity=0.028  Sum_probs=64.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC---Cccch
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL---GWKVG  108 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~---g~~~~  108 (475)
                      ..+.+++...+.++|.|..-|...+.+++.++++       +|..+..++-.+.++|..+++.+..++.+..   +|+..
T Consensus       121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~  193 (467)
T PRK09556        121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR-------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM  193 (467)
T ss_pred             hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc-------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence            4666777777888999999999999999999764       3677788888999999999988877665442   58888


Q ss_pred             hHHHHHHHHHHHHH
Q 011875          109 FGVPAVIMLLSALS  122 (475)
Q Consensus       109 F~i~~v~~~~~~iv  122 (475)
                      |.+.++..++..++
T Consensus       194 f~~~g~~~~~~~i~  207 (467)
T PRK09556        194 FIFPSIIALIIGFI  207 (467)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88876655544333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.11  E-value=0.0016  Score=69.46  Aligned_cols=82  Identities=17%  Similarity=0.197  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec-----------
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-----------  101 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~-----------  101 (475)
                      ...++++..+.++|.|+.-|....++.+.++++       .|.++.++++.+.++|.++++.+...+..           
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~-------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~  187 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKK-------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD  187 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            467888999999999999999999999998763       47888999999999999988877654311           


Q ss_pred             ------------cCCccchhHHHHHHHHHHHH
Q 011875          102 ------------NLGWKVGFGVPAVIMLLSAL  121 (475)
Q Consensus       102 ------------~~g~~~~F~i~~v~~~~~~i  121 (475)
                                  ..+|++.|.+.++..++..+
T Consensus       188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       188 EASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             cccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence                        24799999877766555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.07  E-value=0.0035  Score=64.14  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDI  410 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~  410 (475)
                      +.+.+.+..+++|+|--+.....++..-++++++..|+.||+|..+.+++..++..++....+.
T Consensus       300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778899999999999999999999999999999999999999988888877777766544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.03  E-value=0.00026  Score=72.28  Aligned_cols=90  Identities=13%  Similarity=0.205  Sum_probs=69.1

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhh--hheeccCCccchh
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI--VYIQDNLGWKVGF  109 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~--~~l~~~~g~~~~F  109 (475)
                      ..+.+.+-+.+-+.-.|.=-|.....++.-|+.+       +|.+..++.-.+-|+|+.+.+.++  +++..+++|+.+|
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~-------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f  188 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK-------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAF  188 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc-------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHH
Confidence            3445555555666666666778888888888654       378888999999999999999999  8999899999999


Q ss_pred             HHHHHH-HHHHHHHHHhcCc
Q 011875          110 GVPAVI-MLLSALSFFLASP  128 (475)
Q Consensus       110 ~i~~v~-~~~~~ivf~~~~~  128 (475)
                      .+|++. ++++++.+..+|.
T Consensus       189 ~~pgiiaiival~~~~~~rd  208 (448)
T COG2271         189 YFPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCC
Confidence            999865 5556655655553

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.01  E-value=0.0016  Score=67.69  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec------cCCcc
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD------NLGWK  106 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~------~~g~~  106 (475)
                      ...++++-.+.++|.|..-|...++..+.+++       ++|.....++..+.++|..+++.+.+++.+      ..||+
T Consensus        96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr  168 (412)
T TIGR02332        96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ  168 (412)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence            45677788899999999999888888988864       357888999999999999999999887753      46999


Q ss_pred             chhHHHHHHHHHHHHHH
Q 011875          107 VGFGVPAVIMLLSALSF  123 (475)
Q Consensus       107 ~~F~i~~v~~~~~~ivf  123 (475)
                      +.|.+.++..++..++.
T Consensus       169 ~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       169 WLFLLEGFPSVILGVMT  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999777665544433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.92  E-value=6.2e-06  Score=84.63  Aligned_cols=156  Identities=13%  Similarity=0.104  Sum_probs=107.5

Q ss_pred             ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011875          266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  345 (475)
Q Consensus       266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (475)
                      .+|..-.+.-+++.|+...+-    .|       .+..+-|++|.++=.++.+..++.                      
T Consensus        72 ll~~vf~v~~~i~sPl~gyLa----dr-------yNR~~v~~vG~~iW~~Av~~~~fs----------------------  118 (493)
T KOG1330|consen   72 LLQTVFIVVFMIASPLFGYLA----DR-------YNRKRVIAVGIFIWTLAVFASGFS----------------------  118 (493)
T ss_pred             chhHHHHHHHHHHHHHHHHHH----hh-------cCcceEEeeHHHHHHHHHHHHHHH----------------------
Confidence            445444445556668777742    33       233455888988888877655543                      


Q ss_pred             chHHHH-HHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCC-CCCCC
Q 011875          346 MSAMWQ-LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGG-WIPSN  423 (475)
Q Consensus       346 vs~~wl-i~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~-w~~~~  423 (475)
                       +-+|| ++.=-+.|+||...+|..-+++++..|+..||+++|+|+++.-+|+.+|...+..+...+      . |    
T Consensus       119 -~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~------~~W----  187 (493)
T KOG1330|consen  119 -NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT------FWW----  187 (493)
T ss_pred             -HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc------cce----
Confidence             34565 467789999999999999999999999999999999999999999999887776665332      2 3    


Q ss_pred             CcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCCCCCCCCCCcc
Q 011875          424 INKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGME  472 (475)
Q Consensus       424 ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~  472 (475)
                            .+-|++-++++++.+++..++.+-=+|. ..++.+.+++++++
T Consensus       188 ------r~af~~~avl~vi~~~L~~~f~~eP~rg-a~~~~~~~~~~~~~  229 (493)
T KOG1330|consen  188 ------RWAFRGSAVLGVIVGLLVFLFVREPERG-ARDEVDGENKMVKP  229 (493)
T ss_pred             ------EEEEEeehHHHHHHHHHHHhhccCcccc-cccccccCCcCCCC
Confidence                  2235677788877777666555533332 33344445544443

>PRK11462 putative transporter; Provisional

Probab=97.85  E-value=0.0014  Score=69.20  Aligned_cols=81  Identities=17%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-------CCccch
Q 011875           36 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-------LGWKVG  108 (475)
Q Consensus        36 ~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-------~g~~~~  108 (475)
                      +++...+..++.-++.-.-.++.++.-+|.      ++|.+..++.-.+.++|.++++++...+.+.       .||...
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~------~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~  185 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDP------TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG  185 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence            344444556777777778888888877654      3589999999999999988886664432222       245555


Q ss_pred             hHHHHHHHHHHHHH
Q 011875          109 FGVPAVIMLLSALS  122 (475)
Q Consensus       109 F~i~~v~~~~~~iv  122 (475)
                      ..+-++..++...+
T Consensus       186 ~~i~~ii~~i~~~i  199 (460)
T PRK11462        186 IAVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55444444444433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.0053  Score=65.28  Aligned_cols=87  Identities=18%  Similarity=0.147  Sum_probs=70.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee------ccCCc
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ------DNLGW  105 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~------~~~g~  105 (475)
                      ..+.+.+--.++++-.+..-|+....++.-|+++       +|..-+.++|.+.++|..+|.++...+.      ...||
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~-------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW  205 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS-------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW  205 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh-------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence            4555666677889999999999999999999875       3677788899999999999998888763      35799


Q ss_pred             cchhHHHHHHHHHHHHHHHh
Q 011875          106 KVGFGVPAVIMLLSALSFFL  125 (475)
Q Consensus       106 ~~~F~i~~v~~~~~~ivf~~  125 (475)
                      ++.|++.++.+++..++.++
T Consensus       206 ~~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  206 RWLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             eeehhHHHHHHHHHHheEEE
Confidence            99999999887776665433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.75  E-value=0.0034  Score=65.36  Aligned_cols=86  Identities=9%  Similarity=0.061  Sum_probs=65.4

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec---------
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---------  101 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~---------  101 (475)
                      ...+.+.++..+.++|.|...+..++++.+..+++       ++.+..++...+.++|+.+++.+.+.+..         
T Consensus        92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPES-------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            34677888889999999999999999998865432       35667888889999999999988876621         


Q ss_pred             -----------------cCCccchhHHHHHHHHHHHHHH
Q 011875          102 -----------------NLGWKVGFGVPAVIMLLSALSF  123 (475)
Q Consensus       102 -----------------~~g~~~~F~i~~v~~~~~~ivf  123 (475)
                                       ..+|+..|.+.++..++..+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             2469999987776555444433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.74  E-value=0.0016  Score=67.71  Aligned_cols=109  Identities=11%  Similarity=-0.033  Sum_probs=79.3

Q ss_pred             cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011875          267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  346 (475)
Q Consensus       267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v  346 (475)
                      ..+...+...+..++..++    .+|.+.|       +-+.+++++.+++.+..++.                      .
T Consensus        48 ~~s~~~~~~~~~~~~~g~l----~dr~G~r-------~~~~~~~~~~~~~~~~~~~~----------------------~   94 (412)
T TIGR02332        48 AATLFYAAYVICGIPSNIM----LAIIGAR-------RWIAGIMVLWGIASTATMFA----------------------T   94 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHH----HHHhChH-------HHHHHHHHHHHHHHHHHHHh----------------------c
Confidence            3444444444455555443    3444322       23566777777776665543                      3


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...++.|++|....|.....+.+..|++.|+..+|++....++|..+++.++....
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999999999999999999988876543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=97.73  E-value=0.0012  Score=67.85  Aligned_cols=84  Identities=13%  Similarity=-0.026  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhh
Q 011875          303 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS  382 (475)
Q Consensus       303 ~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~k  382 (475)
                      .+-+..++++.+++.+..+..                      .+.++++...+++|++.....|....++.+..|++.|
T Consensus        74 r~~~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r  131 (390)
T PRK03545         74 RKLLIGLFVLFIASHVLSALA----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK  131 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence            345667777777776655443                      3466677778899999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          383 SIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       383 g~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +..+|++....++|..+++.+.....
T Consensus       132 ~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545        132 AQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999998887654

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.73  E-value=0.0022  Score=67.07  Aligned_cols=110  Identities=10%  Similarity=0.051  Sum_probs=77.4

Q ss_pred             ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011875          266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  345 (475)
Q Consensus       266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (475)
                      ++.+...+...+..|+..++    .+|.+.|       +-+.+++++.+++.+..+..                      
T Consensus        62 ~~~~~~~~~~~~~~~~~G~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------  108 (434)
T PRK11663         62 LLATLFYITYGVSKFVSGIV----SDRSNAR-------YFMGIGLIATGIINILFGFS----------------------  108 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHH----HhhcCCc-------hhHHHHHHHHHHHHHHHHHH----------------------
Confidence            34444445555555655553    3443322       23566777777766554432                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      -+.+.++...++.++++....+.....+.+..|++.||..+|++....++|..+++.+...+.
T Consensus       109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  171 (434)
T PRK11663        109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA  171 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234445566778899998889999999999999999999999999999999999988776654

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.72  E-value=0.00063  Score=68.59  Aligned_cols=136  Identities=10%  Similarity=0.004  Sum_probs=93.7

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+..++..|+..++    .+|.++|       +-+.++.++.+++.+..+..                     
T Consensus        32 ~~~~~~~~~~~~~~~~~~g~l----~d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------   79 (399)
T TIGR00893        32 GYVFSAFSWGYVVGQFPGGWL----LDRFGAR-------KTLAVFIVIWGVFTGLQAFA---------------------   79 (399)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH----HHhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence            455666666666766766654    3443322       12445666666655544432                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  424 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l  424 (475)
                       .+.++++...++.|++.....+.....+.+..|++.|+..+|++.....+|..+++.+...+....      +|     
T Consensus        80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~-----  147 (399)
T TIGR00893        80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW-----  147 (399)
T ss_pred             -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc-----
Confidence             256667788899999999999999999999999999999999999999999999998877543211      23     


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHH
Q 011875          425 NKGHYDYYYWLLTALSMANFLYYLA  449 (475)
Q Consensus       425 n~~~~~~~f~~la~l~~~~~~~~~~  449 (475)
                           ...|+..+++.++..+....
T Consensus       148 -----~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893       148 -----QWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             -----hHHHHHHHHHHHHHHHHhhh
Confidence                 34566666666555554433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.66  E-value=0.0093  Score=65.70  Aligned_cols=87  Identities=13%  Similarity=0.190  Sum_probs=71.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC--------
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--------  103 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~--------  103 (475)
                      ...+++++-.+.++|.|..-+...+++.|.++++       +|..++.+++.+.++|..+|+++++++.+.+        
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~-------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~  243 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK-------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNT  243 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCcc-------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCC
Confidence            4567788999999999999999999999988653       4788999999999999999999998876432        


Q ss_pred             --------------CccchhHHHHHHHHHHHHHHHh
Q 011875          104 --------------GWKVGFGVPAVIMLLSALSFFL  125 (475)
Q Consensus       104 --------------g~~~~F~i~~v~~~~~~ivf~~  125 (475)
                                    +|+.+|.+.++..++..+.++.
T Consensus       244 ~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       244 EDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          2888999888777766555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.66  E-value=0.05  Score=57.82  Aligned_cols=58  Identities=19%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcc
Q 011875          354 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT  411 (475)
Q Consensus       354 ~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~  411 (475)
                      .-++.|+.---..+.+=++..++.|++..+.+.|+|.++.-.++.+|+.+..++...+
T Consensus       386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t  443 (477)
T PF11700_consen  386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT  443 (477)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456777777778888899999999999999999999999999999999998877543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.66  E-value=0.00055  Score=68.35  Aligned_cols=133  Identities=16%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +++.+...+...+..|+..++.    +|.       +..+-+.++.++.+++.+...+.                     
T Consensus        35 ~~~~~~~~~~~~~~~~~~g~l~----dr~-------g~r~~l~~~~~~~~~~~~~~~~~---------------------   82 (352)
T PF07690_consen   35 GLLFSAFFLGSALFSPFAGYLS----DRF-------GRRRVLIIGLLLFALGSLLLAFA---------------------   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHS--------HHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHc-------CCeeeEeehhhhhhhHHHHhhhh---------------------
Confidence            3455555666666667666643    432       22234666777777774444321                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  424 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l  424 (475)
                       .+.++++...++.|+++....+.....+.+..|++.|+..+|++....++|..+++.+.....+.-      +|     
T Consensus        83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~-----  150 (352)
T PF07690_consen   83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW-----  150 (352)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH-----
T ss_pred             -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc-----
Confidence             224467788899999999999999999999999999999999999999999999999887764210      12     


Q ss_pred             cCcchhHHHHHHHHHHHHHHHH
Q 011875          425 NKGHYDYYYWLLTALSMANFLY  446 (475)
Q Consensus       425 n~~~~~~~f~~la~l~~~~~~~  446 (475)
                           ...|++.+++.++..++
T Consensus       151 -----~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  151 -----RWAFLISAILSLIAAIL  167 (352)
T ss_dssp             -----CCHHHHHHHHHHHHHHH
T ss_pred             -----ccccccccchhhhhhhh
Confidence                 23466677777666553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.64  E-value=0.0026  Score=64.56  Aligned_cols=111  Identities=13%  Similarity=0.015  Sum_probs=80.2

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+.+.+...+..|+..++    .+|.++       .+-+.+|.++.+++.+..+..                     
T Consensus        43 g~~~~~~~~~~~~~~~~~g~l----~d~~g~-------r~~~~~~~~~~~~~~~~~~~~---------------------   90 (385)
T TIGR00710        43 QMTLTLYLLGFAAGQLLWGPL----SDRYGR-------RPVLLLGLFIFALSSLGLALS---------------------   90 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhhhH----HHhcCC-------hHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            344555555555666655553    344322       233556777777766654432                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                       -+.++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        91 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        91 -NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             -ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             235566777899999999999999999999999999999999999999999999988877654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.61  E-value=0.0026  Score=65.41  Aligned_cols=110  Identities=18%  Similarity=0.029  Sum_probs=78.4

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +++.+...+..++..++..++    .+|.+.|       +-+.++.++.+++.+..+..                     
T Consensus        53 g~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------  100 (406)
T PRK11551         53 GWAFSAGILGLLPGALLGGRL----ADRIGRK-------RILIVSVALFGLFSLATAQA---------------------  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence            345555555555666655553    3443322       33555666665555433321                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                       .+.++++...++.+++.....|...+.+.+..|++.|+..+|++.....+|..+++.+....
T Consensus       101 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551        101 -WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             -ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34666777889999999999999999999999999999999999999999999988776554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.60  E-value=0.00046  Score=69.48  Aligned_cols=109  Identities=8%  Similarity=0.018  Sum_probs=78.0

Q ss_pred             ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011875          266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  345 (475)
Q Consensus       266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (475)
                      ++.+...+...+..++..++    .+|.++|       +-+.+|.++.+++.+..++.                      
T Consensus        34 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------   80 (379)
T TIGR00881        34 LLLSSFSIAYGISKFVMGSV----SDRSNPR-------VFLPIGLILCAIVNLFFGFS----------------------   80 (379)
T ss_pred             HHHHHHHHHHHhhhhhhhHH----HHhhCCe-------ehhHHHHHHHHHHHHHHHHh----------------------
Confidence            44555555555555655554    3443322       23566777777776655443                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHH-HHHHhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS-LIMNAV  407 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~-~l~~~~  407 (475)
                      .+.++++...++.+++.....|.....+.+..|++.|+..+|++.....+|..+++ .+....
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  143 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI  143 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH
Confidence            24556677789999999999999999999999999999999999999999999988 344433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.59  E-value=0.0012  Score=66.24  Aligned_cols=116  Identities=15%  Similarity=0.023  Sum_probs=83.0

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+..++..|+..++    .+|.++|       +-+.++.++.+++.+..+....       .+          
T Consensus        37 g~~~~~~~~~~~i~~~~~G~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~~~-------~~----------   88 (365)
T TIGR00900        37 SLAALAGMLPYVVLSPIAGAL----ADRYDRK-------KVMIGADLIRAVLVAVLPFVAL-------LG----------   88 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhhHH----HHhhchh-------HHHHHHHHHHHHHHHHHHHHHH-------cC----------
Confidence            445556666666666766654    3443222       2345566665555555444321       00          


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      ..+.++++...++.+++..+..|...+++.+..|++.|+..+|.+.....+|..+++.+.....
T Consensus        89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            1366777788899999999999999999999999999999999999999999999998877654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.57  E-value=0.0051  Score=63.49  Aligned_cols=109  Identities=11%  Similarity=-0.061  Sum_probs=81.7

Q ss_pred             cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011875          267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  346 (475)
Q Consensus       267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v  346 (475)
                      ..+...+...+..|+...+    .+|.       ...+-+..++++.+++.+..+..                      .
T Consensus        60 ~~~~~~~~~~~~~~~~g~l----~Dr~-------grr~~~~~~~~~~~~~~~~~~~~----------------------~  106 (394)
T PRK10213         60 SVTVTAFVAMFASLFITQT----IQAT-------DRRYVVILFAVLLTLSCLLVSFA----------------------N  106 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH----hccc-------CcHHHHHHHHHHHHHHHHHHHHH----------------------C
Confidence            3445566666666666553    3433       22344667777777766554332                      3


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...++.|++.....|.....+.+..|++.|+..+|++....++|..+++.+.....
T Consensus       107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~  168 (394)
T PRK10213        107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG  168 (394)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677778899999999999999999999999999999999999999999999999887765

>PRK10133 L-fucose transporter; Provisional

Probab=97.54  E-value=0.018  Score=60.44  Aligned_cols=62  Identities=13%  Similarity=0.081  Sum_probs=47.6

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhe
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI   99 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l   99 (475)
                      .+...++++..+.++|.|...+..++++.|.. +++      ++....+.+..+..+|..+++.+.+.+
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PES------SGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-Chh------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44677888999999999999999999999753 222      244457777888888999988776543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.54  E-value=0.0032  Score=66.12  Aligned_cols=88  Identities=17%  Similarity=0.066  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~  112 (475)
                      .....+.+.+..+|.....-..-++..+.-+++..     .+...-++.|.+.++|++++..+.+++.++.+++..|.++
T Consensus        86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~  160 (433)
T PF03092_consen   86 AAIAVVLLFLASFGYAFADVAADALVVELARREPE-----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS  160 (433)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence            33445566777888888888888888887665543     3666678889999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHh
Q 011875          113 AVIMLLSALSFFL  125 (475)
Q Consensus       113 ~v~~~~~~ivf~~  125 (475)
                      ++.-.+..+..+.
T Consensus       161 ~~~~~l~~~~~~~  173 (433)
T PF03092_consen  161 AALPLLMLIVALF  173 (433)
T ss_pred             HHHHHHHHHHHHH
Confidence            8776666554433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.53  E-value=0.0033  Score=64.50  Aligned_cols=139  Identities=17%  Similarity=0.137  Sum_probs=107.3

Q ss_pred             CCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 011875          264 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGI-GLLFSTASMTAWAIVEAARRSIAINEGISDDLRA  342 (475)
Q Consensus       264 ~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~-G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~  342 (475)
                      .+++-+...+.+.+..|++..+.    +|..        .||.-+ .+.+..++-+..++.                   
T Consensus        50 aG~lis~yAl~~ai~ap~l~~lt----~r~~--------Rr~lLl~~l~lFi~~n~l~alA-------------------   98 (394)
T COG2814          50 AGQLITAYALGVALGAPLLALLT----GRLE--------RRRLLLGLLALFIVSNLLSALA-------------------   98 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----cccc--------hHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            45788889999999999888753    3321        123333 344555555544443                   


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCC
Q 011875          343 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS  422 (475)
Q Consensus       343 ~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~  422 (475)
                         .|.+.++..=++.+++--...+++...+.+++|++.|+..+|+-+...+++..+|..++.++.+.-      +|   
T Consensus        99 ---p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW---  166 (394)
T COG2814          99 ---PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW---  166 (394)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH---
Confidence               467778899999999999999999999999999999999999999999999999988888876432      55   


Q ss_pred             CCcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011875          423 NINKGHYDYYYWLLTALSMANFLYYLACCK  452 (475)
Q Consensus       423 ~ln~~~~~~~f~~la~l~~~~~~~~~~~~~  452 (475)
                             ..-|+.+++++++..+..+...+
T Consensus       167 -------R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 -------RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                   34678888888888887777777

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.50  E-value=0.0066  Score=64.70  Aligned_cols=111  Identities=13%  Similarity=-0.047  Sum_probs=82.3

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      .|..+...+...++.|+..++.    +|.++       .+-+.+|.++.+++.+..+..                     
T Consensus        44 ~~~~~~~~l~~~~~~~~~G~l~----D~~Gr-------k~~l~~~~~~~~~~~~~~~~a---------------------   91 (495)
T PRK14995         44 LWIIDIYSLVMAGMVLPMGALG----DRIGF-------KRLLMLGGTLFGLASLAAAFS---------------------   91 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhcc-------HHHHHHHHHHHHHHHHHHHHc---------------------
Confidence            4556666666666777666643    44322       234666777777776655432                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-cCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE-LPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~-AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                       -+.++++...+++|+|.....|.....+.+. .|++.|+..+|++....++|..+|+.+...+.
T Consensus        92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995         92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             3566777888999999999999888877665 58899999999999999999999999887765

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.48  E-value=0.0058  Score=51.74  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++.....++.+++.-...+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            34556667899999999999999999999999999999999999999999999998877654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.45  E-value=0.0039  Score=65.62  Aligned_cols=112  Identities=11%  Similarity=-0.030  Sum_probs=82.7

Q ss_pred             CCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 011875          264 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV  343 (475)
Q Consensus       264 ~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~  343 (475)
                      .++..+...+..++..|+..++.    +|.++       .+-+.+|.++.+++.+..+..                    
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~~~~~~--------------------   87 (485)
T TIGR00711        39 VQWVITSYMLANAISIPLTGWLA----KRFGT-------RRLFLISTFAFTLGSLLCGVA--------------------   87 (485)
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHH----HHhCc-------HHHHHHHHHHHHHHHHHHhCc--------------------
Confidence            34666666677777777666643    33322       233556666666665544321                    


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          344 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       344 ~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                        .+.++++...+++|++.....|.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        88 --~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        88 --PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             --CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence              345667788899999999999999999999999999999999999999999999988876654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.44  E-value=0.0059  Score=62.57  Aligned_cols=111  Identities=12%  Similarity=0.035  Sum_probs=82.2

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+.+.+..++..|+..++    .+|.+       ..+-+.+|.++.+++.+..+..                     
T Consensus        41 g~~~s~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~l~~~~---------------------   88 (382)
T PRK10091         41 GHMISYYALGVVVGAPIIALF----SSRYS-------LKHILLFLVALCVIGNAMFTLS---------------------   88 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH----HccCc-------cHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            455666677777777766664    34432       2234566777777766655432                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                       .+.++++...++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.++..+.
T Consensus        89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence             346777778899999999999999899999999999999999999888899988887776553

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.44  E-value=0.0069  Score=66.45  Aligned_cols=88  Identities=17%  Similarity=0.360  Sum_probs=63.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec----------
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD----------  101 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~----------  101 (475)
                      -..++++|..+.++|.--+.|    +|--..||+..+   ++...++.++|..--+|..+|.+++++.-+          
T Consensus       236 ~~llff~~q~l~GIG~Tpi~t----lGisYiDDnvk~---~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~  308 (735)
T KOG3626|consen  236 PFLLFFLGQLLLGIGATPIFT----LGISYIDDNVKK---KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI  308 (735)
T ss_pred             hHHHHHHHHHHhhcCCCCCcc----CCCccccccccc---cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence            445778888888888766544    444444444332   235778899999999999999888876421          


Q ss_pred             --------cCC-ccchhHHHHHHHHHHHHHHHhc
Q 011875          102 --------NLG-WKVGFGVPAVIMLLSALSFFLA  126 (475)
Q Consensus       102 --------~~g-~~~~F~i~~v~~~~~~ivf~~~  126 (475)
                              .+| ||+||++++..++++.+.+++.
T Consensus       309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f  342 (735)
T KOG3626|consen  309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF  342 (735)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence                    233 9999999999999988887765

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.40  E-value=0.0069  Score=62.69  Aligned_cols=91  Identities=11%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHH-hHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  424 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~-~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l  424 (475)
                      .+++|+++.-.++++.--+......-++++..|+++.++...+. .++.++|..+.+.+.+...+.-             
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-------------  376 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-------------  376 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-------------
Confidence            56778888889999998899999999999999999998888774 5777888887777666554321             


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011875          425 NKGHYDYYYWLLTALSMANFLYYLACCK  452 (475)
Q Consensus       425 n~~~~~~~f~~la~l~~~~~~~~~~~~~  452 (475)
                        | ....|++++++.++..++=.+.-+
T Consensus       377 --G-~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  377 --G-FQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             --H-HHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             --C-cHHHHHHHHHHHHHHHHHheeeec
Confidence              1 334677788776655554444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.01  Score=63.54  Aligned_cols=122  Identities=14%  Similarity=0.041  Sum_probs=80.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011875          302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM  381 (475)
Q Consensus       302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~  381 (475)
                      ...-..++++..+++.+...+.                      .+.+-++..-++.|+..-...........+..+...
T Consensus       364 ~~~~~~~~ll~~gl~~~~~p~~----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~  421 (509)
T KOG2504|consen  364 ALVLFLLTLLIAGLARLFLPFA----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK  421 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh
Confidence            3444566777777766444432                      223335556677788877777777777788877777


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCC
Q 011875          382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR  460 (475)
Q Consensus       382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~  460 (475)
                      -+-..|+..+..+++..+|+.+.+.+.+.+               +.++..|...++..+++.+.+.+....+++++++
T Consensus       422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~~~~  485 (509)
T KOG2504|consen  422 LSNAYGLLLLFQGIGALVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILRECLKRREKS  485 (509)
T ss_pred             cchHHHHHHHHhHHHHHcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhHHHHHhcccc
Confidence            778999999999999999998887655332               1145556667777777776666665344444433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.0008  Score=68.19  Aligned_cols=147  Identities=14%  Similarity=0.074  Sum_probs=114.0

Q ss_pred             cCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc
Q 011875          263 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA  342 (475)
Q Consensus       263 p~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~  342 (475)
                      ..+++...-++.-++.-|+...+.    .|.+.+       .-|.+|++.+.++-++.++.+                  
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~----~~iGy~-------ipm~~Gl~vmf~sTilFafg~------------------  157 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLI----DRIGYK-------IPMVAGLFVMFLSTILFAFGN------------------  157 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhH----HHhccc-------cHHHHHHHHHHHHHHHHHHcc------------------
Confidence            345666666666667777766643    444433       348899999999988887764                  


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh-hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 011875          343 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM-SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP  421 (475)
Q Consensus       343 ~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~-kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~  421 (475)
                          |++.++..-.++|+|..+++..|+++.++.-|+.- ||..||+-.-..++|..+|+..++.+++.-      +   
T Consensus       158 ----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~------G---  224 (464)
T KOG3764|consen  158 ----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA------G---  224 (464)
T ss_pred             ----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc------C---
Confidence                23357788999999999999999999999999887 599999999999999999999998877542      1   


Q ss_pred             CCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011875          422 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK  458 (475)
Q Consensus       422 ~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~  458 (475)
                             ...=|.++++++++..++-+++.+.++..+
T Consensus       225 -------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  225 -------KSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             -------CcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence                   122378999999999988888877766554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.35  E-value=0.006  Score=61.53  Aligned_cols=77  Identities=18%  Similarity=0.171  Sum_probs=54.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec----------
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD----------  101 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~----------  101 (475)
                      +.+.++++..+.++|.+.+ +...++++|.++++       +|....+++..+.|+|..+++.+.+.+..          
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK-------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh-------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            4566777777888887766 44678888887543       47888888888888888888777665543          


Q ss_pred             cCCccchh-HHHHHHH
Q 011875          102 NLGWKVGF-GVPAVIM  116 (475)
Q Consensus       102 ~~g~~~~F-~i~~v~~  116 (475)
                      ..+|++.| .+.++..
T Consensus       162 ~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886       162 HLAWGWAFVIVPAGIL  177 (366)
T ss_pred             cccccchhHHHHHHHH
Confidence            34899999 4434333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.32  E-value=0.0013  Score=68.91  Aligned_cols=100  Identities=12%  Similarity=0.058  Sum_probs=72.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHH-HHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG-LSAANLVASLIMNAVDDITKRGGNGGWIPSNI  424 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~-~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l  424 (475)
                      -++|..+|.-+++++.-.++..+..+++...||++++..++|+.-.. .++|..+|++++..+...         +    
T Consensus       457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---------f----  523 (618)
T KOG3762|consen  457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---------F----  523 (618)
T ss_pred             cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---------e----
Confidence            34666678889999999999999999999999999999999987643 366666666665554311         0    


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011875          425 NKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV  461 (475)
Q Consensus       425 n~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~  461 (475)
                         -...+|+..++.+++..+++..+-+..+++...+
T Consensus       524 ---g~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i~  557 (618)
T KOG3762|consen  524 ---GARTTFRIFGIACLVTLALFISIQLLLKRRGFIK  557 (618)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhhhhhccccccC
Confidence               0334677788888877777777776666655433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.29  E-value=0.0078  Score=61.32  Aligned_cols=111  Identities=15%  Similarity=0.125  Sum_probs=81.4

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +++.++..+...+..|+...+.    +|.++|       +-+.++.++.+++.+..++.                     
T Consensus        50 g~~~~~~~~~~~~~~~~~G~l~----Dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------   97 (405)
T TIGR00891        50 ASLISAALISRWFGALMFGLWG----DRYGRR-------LPMVTSIVLFSAGTLACGFA---------------------   97 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhccH-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            4555666666666767666643    443322       33555666666665544332                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                       .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus        98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             245566777899999999999999999999999999999999999999999999998877654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.26  E-value=0.0099  Score=63.02  Aligned_cols=168  Identities=8%  Similarity=-0.062  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCC
Q 011875          220 KALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPC  298 (475)
Q Consensus       220 k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~  298 (475)
                      ++++.+.-.+.+.-+.|.+..- .+. ..|...++.       .-......+.++.-++.+|+..++-.+...|.++|  
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~-yl~~lg~~~-------~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR--   73 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTP-YVQELGIPH-------AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR--   73 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCH-------HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh--
Confidence            4566666777777777766543 333 233322221       11245566778888888888887654333333322  


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc-cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc
Q 011875          299 QLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV-QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL  377 (475)
Q Consensus       299 ~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~A  377 (475)
                        ++.  +..|.+..+++++.++......      +-+.++.++.. ....++.+..+.+..++--...+..-+++.+..
T Consensus        74 --rp~--il~g~~~~~~~l~ll~~~~~~~------~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~  143 (477)
T TIGR01301        74 --RPF--IAAGAALVAFAVILIGFAADIG------HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLT  143 (477)
T ss_pred             --HHH--HHHHHHHHHHHHHHHHhCchhh------hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence              121  3345666666766665443110      00001111111 122234444455555565566667789999999


Q ss_pred             Cchhh--hHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          378 PKSMS--SIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       378 P~~~k--g~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      |++.|  +...+......++|+.+|..++...
T Consensus       144 p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       144 GGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876  5788888888899999998887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10054 putative transporter; Provisional

Probab=97.25  E-value=0.0095  Score=61.51  Aligned_cols=111  Identities=12%  Similarity=0.055  Sum_probs=76.3

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..++..+.-++..|+..++.    +|.++|       +-+.+|.++.+++++..++..                    
T Consensus        46 g~~~s~~~~~~~~~~~~~G~l~----Dr~g~k-------~~~~~~~~~~~~~~~~~~~~~--------------------   94 (395)
T PRK10054         46 GYAMTIALTIGVVFSLGFGILA----DKFDKK-------RYMLLAITAFASGFIAIPLVN--------------------   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----hhcCcc-------hhHHHHHHHHHHHHHHHHHHh--------------------
Confidence            4445555555566667666643    343222       235567777777766554432                    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                        +.+..+..+.+.+.+.....|.....+.+..|++.|+..+|+......+|..+++.+.....
T Consensus        95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              23333445567777777778888888999999999999999999999999999998887764

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.24  E-value=0.013  Score=59.53  Aligned_cols=109  Identities=20%  Similarity=0.067  Sum_probs=77.3

Q ss_pred             cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011875          267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  346 (475)
Q Consensus       267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v  346 (475)
                      ..++..+...+..|+..++    .+|.+       ..+-+..|.++.+++.+.....                      .
T Consensus        31 ~~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~----------------------~   77 (377)
T PRK11102         31 TLSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALA----------------------Q   77 (377)
T ss_pred             HHHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHH----------------------c
Confidence            3344455555555555443    34432       2234666777777776655433                      2


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.+.++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677889999999999999999999999999999999999999999999988876654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.20  E-value=0.03  Score=56.37  Aligned_cols=109  Identities=15%  Similarity=0.075  Sum_probs=73.4

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +++.+...+..++..|+..++    .+|.+.|       +-+.++.++.+++.+..+...                    
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~i~~~~~~~~~--------------------   88 (366)
T TIGR00886        40 GNLVAVPVLAGAVLRIILGFL----VDKFGPR-------YTTTLSLLLLAIPCLWAGLAV--------------------   88 (366)
T ss_pred             hHhhHHHHHHHHHHHHHHHHH----HHHhCch-------HHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            455566666666666666654    3443322       346677777777776655431                    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA  406 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~  406 (475)
                       .+.++++...++++++.... +.....+.+..|++.|+..++++.....+|..+++.+...
T Consensus        89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  148 (366)
T TIGR00886        89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP  148 (366)
T ss_pred             -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence             14566667788899987654 5577889999999999999999886666666666655543

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.20  E-value=0.0094  Score=61.73  Aligned_cols=111  Identities=16%  Similarity=0.151  Sum_probs=81.1

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..++..+...+..|+..++    .+|.++       .+-+.+|.++.+++.+..++.                     
T Consensus        56 ~~~~~~~~~~~~l~~~~~g~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~---------------------  103 (426)
T PRK12307         56 AFLATAAFIGRPFGGALFGLL----ADKFGR-------KPLMMWSIVAYSVGTGLSGLA---------------------  103 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhCC-------hHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            344555555656666655554    344332       234566777777776655543                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                       .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus       104 -~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307        104 -SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence             235567778899999999999999999999999999999999999999999999987765543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.19  E-value=0.029  Score=57.52  Aligned_cols=109  Identities=16%  Similarity=0.078  Sum_probs=73.7

Q ss_pred             ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011875          266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  345 (475)
Q Consensus       266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (475)
                      +..++..+...+..|+..++.    +|.++|       +-+..+.++.+++.+..+..                      
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------  104 (408)
T PRK09874         58 LVFSITFLFSAIASPFWGGLA----DRKGRK-------IMLLRSALGMGIVMVLMGLA----------------------  104 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh----hhhCcH-------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence            344555566666667666543    333221       23455666666655443322                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .+.++++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus       105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  166 (408)
T PRK09874        105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA  166 (408)
T ss_pred             hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2456677778888888765 4667788889999999999999999888899999888877654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.18  E-value=0.014  Score=60.41  Aligned_cols=81  Identities=17%  Similarity=0.093  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 011875          306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  385 (475)
Q Consensus       306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~  385 (475)
                      +..|.++.+++++.....                      -+.|+++...++.++++....|.....+.+.+|++.++..
T Consensus        79 l~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a  136 (400)
T PRK11646         79 IVTGMLMRAAGFATMAIA----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRF  136 (400)
T ss_pred             HHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            566777777777655432                      2466777888999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhh
Q 011875          386 STLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       386 ~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +|+......+|..+|+.+.....
T Consensus       137 ~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        137 FSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988887664

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.15  E-value=0.015  Score=59.64  Aligned_cols=109  Identities=7%  Similarity=-0.037  Sum_probs=76.1

Q ss_pred             cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011875          267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  346 (475)
Q Consensus       267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v  346 (475)
                      ..++..+...+..|+..++.    +|.++|       +-+.+|.++.+++.+.....                      .
T Consensus        43 ~~~~~~~~~~~~~~~~G~l~----Dr~g~r-------~~l~~~~~~~~i~~~~~~~~----------------------~   89 (392)
T PRK10473         43 AFSVYLAGMAAAMLFAGKIA----DRSGRK-------PVAIPGAALFIIASLLCSLA----------------------E   89 (392)
T ss_pred             HHHHHHHHHHHHHHhHhHHH----HHhCCh-------HHHHHHHHHHHHHHHHHHHh----------------------C
Confidence            34444445555566666643    333222       23455666666665544321                      2


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...++++++.....+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~  151 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM  151 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677889999999999999999999999999999999999888888888888776653

>TIGR00895 2A0115 benzoate transport

Probab=97.13  E-value=0.0055  Score=62.11  Aligned_cols=62  Identities=18%  Similarity=0.116  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...++.+++.....+.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  165 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI  165 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence            45556777899999999999999999999999999999999999999999999988876653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.10  E-value=0.033  Score=62.30  Aligned_cols=109  Identities=13%  Similarity=0.018  Sum_probs=77.0

Q ss_pred             ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011875          266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  345 (475)
Q Consensus       266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (475)
                      ++.+...+..++..++..++    ..|.+++       +-+.+++++.+++.++.++.                      
T Consensus       206 ~l~s~~~lG~iiG~li~G~L----sDR~GRR-------~~lii~lil~~i~~ll~afa----------------------  252 (742)
T TIGR01299       206 MLGLIVYLGMMVGAFFWGGL----ADKLGRK-------QCLLICLSVNGFFAFFSSFV----------------------  252 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhCcH-------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence            45555555555555555543    4444322       33555655555555444332                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      .+.++++...++.|++.....|....++.+.+|++.||..++++....++|..+++.++..+
T Consensus       253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24566777889999999999999999999999999999999999999999999888766543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.10  E-value=0.012  Score=59.14  Aligned_cols=109  Identities=14%  Similarity=0.103  Sum_probs=74.5

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+...+..|+..++    .+|.++|       +-+.+|.++.+++.+..++..                    
T Consensus        41 g~~~s~~~~~~~~~~~~~G~l----~d~~G~r-------~~~~~~~~~~~~~~~~~~~~~--------------------   89 (377)
T TIGR00890        41 AIWFTLLLIGLAMSMPVGGLL----ADKFGPR-------AVAMLGGILYGLGFTFYAIAD--------------------   89 (377)
T ss_pred             HHHHHHHHHHHHHHhhhhHHH----HHHcCcc-------chhHHhHHHHHHHHHHHHHHH--------------------
Confidence            344555555666666666654    3444333       235667777777776555432                    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                        +.+.+....++.++++....+.....+.+..|+ .|+.++|++....++|..+++.+...+
T Consensus        90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~  149 (377)
T TIGR00890        90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSV  149 (377)
T ss_pred             --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHH
Confidence              345556677899999998888888888888885 599999999999899988766555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.08  E-value=0.039  Score=58.00  Aligned_cols=107  Identities=9%  Similarity=-0.021  Sum_probs=71.0

Q ss_pred             cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011875          267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  346 (475)
Q Consensus       267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v  346 (475)
                      ..+...+...+..|+..++    .+|.+.|       +-+.+|.++.+++.+..++...                  ..-
T Consensus        68 ~~~~~~i~~~~~~~~~G~l----~Dr~g~k-------~~l~~~~~~~~i~~~~~~~~~~------------------~~~  118 (452)
T PRK11273         68 ALSGISIAYGFSKFIMGSV----SDRSNPR-------VFLPAGLILAAAVMLFMGFVPW------------------ATS  118 (452)
T ss_pred             HHHHHHHHHHHHHhhhhhh----hhccCCc-------hhHHHHHHHHHHHHHHHHhhhc------------------ccc
Confidence            3344444445555555553    3443322       3356677777777766555421                  012


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHH
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASL  402 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~  402 (475)
                      +.++++...++.++++....|.....+.+..|++.|+..+|++.....+|..+.+.
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  174 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL  174 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence            45566677789999999888887788889999999999999999888888754433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.07  E-value=0.0069  Score=66.71  Aligned_cols=133  Identities=11%  Similarity=-0.042  Sum_probs=87.6

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-------h---
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAAR--RSIA-------I---  332 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~--~~~~-------~---  332 (475)
                      +++.+.+-+.-.+..++..++    ..|.       +..+-+++|+++.+++.++.++.+...  +...       .   
T Consensus        71 G~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~  139 (633)
T TIGR00805        71 GLINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS  139 (633)
T ss_pred             eeeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence            455566666666666655553    2332       223458899999999988877654210  0000       0   


Q ss_pred             -hcCCCC--------------Cccccc--cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHH
Q 011875          333 -NEGISD--------------DLRAVV--QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA  395 (475)
Q Consensus       333 -~~g~~~--------------~~~~~~--~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~i  395 (475)
                       +..+-.              ++....  ...++.++..-+++|+|+....+.+..++.+..|++.++.++|++.....+
T Consensus       140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i  219 (633)
T TIGR00805       140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF  219 (633)
T ss_pred             cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence             000000              000000  123444556779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 011875          396 ANLVASLIMNAVD  408 (475)
Q Consensus       396 g~~l~~~l~~~~~  408 (475)
                      |..+|..++..+.
T Consensus       220 G~~lG~llgg~l~  232 (633)
T TIGR00805       220 GPAFGYLLGSFCL  232 (633)
T ss_pred             hhHHHHHHHHHHH
Confidence            9999888877654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10504 putative transporter; Provisional

Probab=97.07  E-value=0.026  Score=59.46  Aligned_cols=62  Identities=15%  Similarity=-0.018  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...+++|++.....|.....+.+..|++.++..+|+......+|..+++.+...+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            45556677899999999999999999999999999999999999888899999888877654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.05  E-value=0.04  Score=57.25  Aligned_cols=84  Identities=11%  Similarity=0.108  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcC
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK  426 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~  426 (475)
                      +.++++..-+++|+++.+..+.......+.-|++.++..+|++.....+|..+|+.++.......      +|       
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~------gw-------  169 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV------HW-------  169 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CH-------
Confidence            56677788899999998877777777778889999999999999999999999988886654211      23       


Q ss_pred             cchhHHHHHHHHHHHHHHHH
Q 011875          427 GHYDYYYWLLTALSMANFLY  446 (475)
Q Consensus       427 ~~~~~~f~~la~l~~~~~~~  446 (475)
                         ...|+..++++++..+.
T Consensus       170 ---~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        170 ---KVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             ---HHHHHHHHHHHHHHHHH
Confidence               34566666666655443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.05  E-value=0.0013  Score=71.13  Aligned_cols=214  Identities=17%  Similarity=0.120  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011875           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (475)
Q Consensus        34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~  113 (475)
                      -..|+...+..-+ +..++|++++.|+++......   ..+.-.|..+|+.||+++++..+.            .|+++.
T Consensus        60 lv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g---~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~  123 (571)
T KOG1237|consen   60 LVTYLTLELHASG-GGAANNVNAFGGTQFLLPLLG---AFLADSFLGRYFTINIGSLISLLG------------LFGLTL  123 (571)
T ss_pred             HHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHH
Confidence            3444555555555 899999999999999874332   468889999999999999998754            677777


Q ss_pred             HHHHHHHHHHHhcCccEeecC-CCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhhcc
Q 011875          114 VIMLLSALSFFLASPFYVKSK-ANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAK  192 (475)
Q Consensus       114 v~~~~~~ivf~~~~~~~~~~~-p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~  192 (475)
                      ..++.++..+-+   .+.... ..++|-+....++..++....+..-..+                   ..+++..+.. 
T Consensus       124 ~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r-------------------~~~~~fGadQ-  180 (571)
T KOG1237|consen  124 SAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR-------------------PCLLAFGADQ-  180 (571)
T ss_pred             HHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC-------------------Ccchhhcccc-
Confidence            777777665544   111111 1123333333444444443221100000                   0111111110 


Q ss_pred             CCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHhcCC-CCCCCceecCCccchh
Q 011875          193 HPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDR-HVTPNFEIPSGSFNIF  270 (475)
Q Consensus       193 ~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~~~~-~~~~~~~ip~~~~~~~  270 (475)
                                        +.+...++++.        +...+.|..+.| .+.++.|+..++. +.. +|.+-+++.+..
T Consensus       181 ------------------fd~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~  233 (571)
T KOG1237|consen  181 ------------------FDELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVL  233 (571)
T ss_pred             ------------------cCccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHH
Confidence                              01111122221        123567888888 7788888865554 232 788888899999


Q ss_pred             hHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011875          271 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV  323 (475)
Q Consensus       271 n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~  323 (475)
                      |++.+++|.+....+.++.          +.-..+..+|.++.+++.-..+.+
T Consensus       234 ~~lai~iF~~g~~~y~~~~----------p~gsp~t~i~~Vlvaa~~k~~~~~  276 (571)
T KOG1237|consen  234 NALAILIFLPGFPFYRYKK----------PRGSPKTRIGQVLVAAAFKRKAVV  276 (571)
T ss_pred             HHHHHHHHHcCceeEEeeC----------CCCCchhHHHHHHHHHHHHHhccC
Confidence            9999999999666543322          122267778888888887765433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.02  E-value=0.0095  Score=62.71  Aligned_cols=62  Identities=15%  Similarity=0.042  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++..-+++|++|....|.....+.+..|++.|+.++|++.....+|..+++.+...+.
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC  191 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999998887654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.00  E-value=0.058  Score=55.58  Aligned_cols=62  Identities=15%  Similarity=0.008  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+.....
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677889999999988999999999999999999888887777778888887766543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.00  E-value=0.02  Score=59.42  Aligned_cols=93  Identities=16%  Similarity=0.236  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhH-HHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcch
Q 011875          351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA-GLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY  429 (475)
Q Consensus       351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l-~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~  429 (475)
                      ++...+++|+.-.+..+.+..++.+.+|++.|+..||++.. ..++|..+|+.+++.+.+.-  +.      +.  --..
T Consensus       304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~--g~------~~--~~~~  373 (400)
T PF03825_consen  304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF--GA------RG--MFDW  373 (400)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--cc------hh--hhhH
Confidence            34444689999999999999999999999999999999875 45788888888777655211  00      00  0012


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhh
Q 011875          430 DYYYWLLTALSMANFLYYLACCKA  453 (475)
Q Consensus       430 ~~~f~~la~l~~~~~~~~~~~~~~  453 (475)
                      ..+|.+.+++.++..+++++..|.
T Consensus       374 ~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  374 SAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccC
Confidence            345667777777777777776553

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.00  E-value=0.0015  Score=67.20  Aligned_cols=95  Identities=13%  Similarity=0.035  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011875           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (475)
Q Consensus        34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~  113 (475)
                      ..++++..+.++|.+..-|.......+.+++       ++|.+.+.+++...++|..+++.+.+++.+..||+..|.+.+
T Consensus       303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  375 (399)
T PRK05122        303 WMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA  375 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4455667778888888888777777765532       358899999999999999999989999998999999999998


Q ss_pred             HHHHHHHHHHHhcCccEeecCC
Q 011875          114 VIMLLSALSFFLASPFYVKSKA  135 (475)
Q Consensus       114 v~~~~~~ivf~~~~~~~~~~~p  135 (475)
                      +..+++++..+..+++.+|+.|
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T PRK05122        376 LAALLGLALTWLLYRRAPRAVP  397 (399)
T ss_pred             HHHHHHHHHHHHhcccccccCC
Confidence            8888887776655555544433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.99  E-value=0.011  Score=62.40  Aligned_cols=86  Identities=10%  Similarity=-0.062  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011875          304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS  383 (475)
Q Consensus       304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg  383 (475)
                      +-+.+++++.+++.+..+..-.         +        ...+.+.++...++.|++|-...|.....+.+..|++.||
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~---------~--------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg  157 (467)
T PRK09556         95 QFLPFLLILSAICMLGFGASLG---------S--------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRG  157 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHHh---------c--------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcccee
Confidence            4567777777776655554311         0        1135666778889999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHh
Q 011875          384 IASTLSGAGLSAANLVASLIMNA  406 (475)
Q Consensus       384 ~~~g~~~l~~~ig~~l~~~l~~~  406 (475)
                      .++|++.....+|..+++.+...
T Consensus       158 ~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        158 RFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             eeEEeeecccchhhhHHHHHHHH
Confidence            99999999999999999887654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=96.99  E-value=0.019  Score=59.58  Aligned_cols=110  Identities=14%  Similarity=0.032  Sum_probs=78.9

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +++.+...+...+..|+..++    .+|.+       +.+-+.++.++.+++.+......                   .
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l----~d~~g-------rr~~~~~~~~~~~~~~~~~~~~~-------------------~  123 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWL----SDRFG-------RKKSLLIIALLFVIGAILMGLAA-------------------F  123 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHh----hhhhh-------hHHHHHHHHHHHHHHHHHHHHhc-------------------c
Confidence            344555555555666666654    33332       22335666666666665554331                   1


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM  404 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~  404 (475)
                      ..+.++++...++.|+++....+....++.+..|++.|+..+|++.....+|..+++.+.
T Consensus       124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            133456777889999999999999999999999999999999999999999999999887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.95  E-value=0.033  Score=57.09  Aligned_cols=88  Identities=15%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcC
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK  426 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~  426 (475)
                      +.++++..-++.|+||.. .+.....+.+..|++.|+.++|++.....+|..+++.++..+...      .+|       
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW-------  143 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL-------  143 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence            677888889999999986 456666678899999999999999999999999999888776532      155       


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHh
Q 011875          427 GHYDYYYWLLTALSMANFLYYLACC  451 (475)
Q Consensus       427 ~~~~~~f~~la~l~~~~~~~~~~~~  451 (475)
                         ...|...++++++..++.+...
T Consensus       144 ---r~~f~~~~~l~~~~~~~~~~~l  165 (368)
T TIGR00903       144 ---QLLIIPIAAVAAAGIILVLAAL  165 (368)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHc
Confidence               3356666777666555444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.92  E-value=0.026  Score=55.85  Aligned_cols=111  Identities=17%  Similarity=0.069  Sum_probs=82.8

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+..++..|+..++    .+|.++|       +-+.+|.++.+++.+.....                     
T Consensus        37 ~~~~~~~~~~~~~~~~~~g~~----~d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------   84 (352)
T cd06174          37 GLIVSAFSLGYALGSLLAGYL----SDRFGRR-------RVLLLGLLLFALGSLLLAFA---------------------   84 (352)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH----HHHhCCc-------hhhHHHHHHHHHHHHHHHHh---------------------
Confidence            445555556666666666654    3443322       23666777777776655443                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                       .+.++++...++.+++..+..+.......+..|++.|+..+|+.....++|..+++.+...+.
T Consensus        85 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  147 (352)
T cd06174          85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA  147 (352)
T ss_pred             -ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             235667788899999999999999999999999999999999999999999999998887765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03699 putative transporter; Provisional

Probab=96.92  E-value=0.057  Score=55.51  Aligned_cols=61  Identities=11%  Similarity=0.012  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      +.++++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+...+
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667789999999999999999999999999999999998888888888888776543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.89  E-value=0.0026  Score=53.97  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=72.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.+.+...+.+++.+...+...++..|.++++       +|.+..++.+.+.++|..+++.+.+++.+..+|+..|.+
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  122 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE-------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF  122 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh-------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence            3456667778888999999999999999988653       478889999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 011875          112 PAVIMLLSALSFFL  125 (475)
Q Consensus       112 ~~v~~~~~~ivf~~  125 (475)
                      .++..+++.+....
T Consensus       123 ~~~~~~~~~~~~~~  136 (141)
T TIGR00880       123 LAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88777766655543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.89  E-value=0.079  Score=54.15  Aligned_cols=111  Identities=9%  Similarity=-0.018  Sum_probs=81.0

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+.-.+..|+..++    .+|.++       .+-+.+|.++.++++...+..                     
T Consensus        44 G~~~s~~~l~~~~~~~~~g~l----~dr~g~-------k~~~~~~~~~~~~~~~~~~~~---------------------   91 (381)
T PRK03633         44 GVVSSSYFTGNLVGTLLAGYV----IKRIGF-------NRSYYLASLIFAAGCAGLGLM---------------------   91 (381)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH----HHHHHH-------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            445555555556666665554    344322       234667777777777655432                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                       -+.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+|+.+.....
T Consensus        92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             245667778899999999999998888888999999999999999999999999998876653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.88  E-value=0.054  Score=56.35  Aligned_cols=113  Identities=11%  Similarity=0.002  Sum_probs=83.9

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +++.+...+..++..|+..++    .+|.+.       .+-+.+|+++.+++.+.......                   
T Consensus        41 g~l~s~~~~g~~i~~~~~g~l----~~r~G~-------r~~~~~g~~l~~~g~~l~~~~~~-------------------   90 (410)
T TIGR00885        41 ALVQSAFYGGYFIMAIPAAIF----MKKLSY-------KAGILLGLFLYALGAFLFWPAAE-------------------   90 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhCc-------hHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            456666666677777766654    344432       24577788888887655432210                   


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      ..+.++++...++.++|--+..+....++.+.+|++.++..+++.....++|..+++.+...+
T Consensus        91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            135566677789999999999999999999999999999999999999999999999887765

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.86  E-value=0.055  Score=56.57  Aligned_cols=113  Identities=12%  Similarity=0.033  Sum_probs=74.6

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..++..+...+..++..++    .+|.+.|       +-+.+|.++.+++.+..+....                  .
T Consensus        64 g~~~~~~~~~~~~~~~~~G~l----~dr~g~~-------~~~~~~~~~~~~~~~~~~~~~~------------------~  114 (438)
T TIGR00712        64 GFALSAISIAYGFSKFIMGSV----SDRSNPR-------VFLPAGLILSAAVMLLMGFVPW------------------A  114 (438)
T ss_pred             HHHHHHHHHHHHHhhhccchh----hhccCCc-------eehHHHHHHHHHHHHHHhcccc------------------c
Confidence            344444444445555555553    3443322       2345577777776655443210                  0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA  406 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~  406 (475)
                      ..+.+.+....++.++++....+...+.+.+..|++.|+..+|++....++|..+++.+...
T Consensus       115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence            12344455667889999998888888999999999999999999999999999888776543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.86  E-value=0.027  Score=58.01  Aligned_cols=110  Identities=10%  Similarity=0.066  Sum_probs=80.0

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+...+..|+..++    .+|.+.       .+-+..|+++.+++.+..++.                     
T Consensus        47 g~~~s~~~~~~~l~~~~~g~l----~dr~G~-------r~~l~~~~~l~~~~~~~~~~a---------------------   94 (393)
T PRK09705         47 ALLTALPVVTMGGLALAGSWL----HQHVSE-------RRSVAISLLLIAVGALMRELY---------------------   94 (393)
T ss_pred             HHHHHHHHHHHHHHhhhhHHH----HHHhCc-------hHHHHHHHHHHHHHHHHHHHC---------------------
Confidence            444555555666666666554    344332       345778888888888776654                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                       .+.++++..-++.|+++....+...+.+.+..| +.|+.++|++......|..+++.+.....
T Consensus        95 -~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705         95 -PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             -cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             234456677899999999999999999988888 67899999999888888888888776543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.86  E-value=0.28  Score=52.02  Aligned_cols=86  Identities=12%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhh-hh-heeccCCccchhH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC-IV-YIQDNLGWKVGFG  110 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~-~~-~l~~~~g~~~~F~  110 (475)
                      .-++.+|-.+.++..|.......-++.+.=+++       .|...=+..=+++++|.+++..+ .+ .++..-.|++.++
T Consensus       116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~-------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~  188 (485)
T KOG0569|consen  116 FEMLILGRLIVGLACGLSTGLVPMYLTEISPKN-------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA  188 (485)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh-------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH
Confidence            456788888999999999888888888765432       35555556678889999988433 33 4667778999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011875          111 VPAVIMLLSALSFFL  125 (475)
Q Consensus       111 i~~v~~~~~~ivf~~  125 (475)
                      .+.+..++.++...+
T Consensus       189 ~~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  189 FPLIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            998877777776544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.83  E-value=0.029  Score=59.68  Aligned_cols=95  Identities=17%  Similarity=0.141  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCc
Q 011875          348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG  427 (475)
Q Consensus       348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~  427 (475)
                      .+-++...+++|+.|-...|.--.....-=.++.+++.||+|+...++|+.+|+++...+.+.....+..+|        
T Consensus       134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW--------  205 (495)
T KOG2533|consen  134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW--------  205 (495)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc--------
Confidence            444667779999999999999999999999999999999999999999999999998775432211223345        


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhh
Q 011875          428 HYDYYYWLLTALSMANFLYYLACCK  452 (475)
Q Consensus       428 ~~~~~f~~la~l~~~~~~~~~~~~~  452 (475)
                        .+.|.+-++++++.+++.++..+
T Consensus       206 --~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  206 --RWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             --eeehhHHHHHHHHHHheEEEEec
Confidence              46788888888877765554444

>TIGR00901 2A0125 AmpG-related permease

Probab=96.77  E-value=0.069  Score=53.83  Aligned_cols=63  Identities=14%  Similarity=0.036  Sum_probs=54.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .+.+++...+++.++.-.+..|...+++.+..|++.|+...|+......+|..+++.+.....
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345666677788888888899999999999999999999999999999999999988876554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.71  E-value=0.53  Score=49.79  Aligned_cols=59  Identities=12%  Similarity=-0.112  Sum_probs=43.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY   98 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~   98 (475)
                      +.+.+++.-.+.++| |..-+.....+.+.|+++       +|..+..++-...|+|..++.++.+.
T Consensus       127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~-------~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKA-------KQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh-------HhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456777777788888 556677888899988653       47788888877778888766555543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.70  E-value=0.087  Score=55.53  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHH
Q 011875          356 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWL  435 (475)
Q Consensus       356 vl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~  435 (475)
                      ++.|+++....+.....+.+..| +.|+..+|++.....+|..+++.+...+....      +|          ..-|++
T Consensus       116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw----------r~~f~~  178 (455)
T TIGR00892       116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW----------RGSFLI  178 (455)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch----------HHHHHH
Confidence            67788888776777777777776 68999999999999999998888776544211      33          345666


Q ss_pred             HHHHHHHHHHHHHHH
Q 011875          436 LTALSMANFLYYLAC  450 (475)
Q Consensus       436 la~l~~~~~~~~~~~  450 (475)
                      .++++++..+..++.
T Consensus       179 ~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       179 LGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            777666555544433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.70  E-value=0.018  Score=61.07  Aligned_cols=114  Identities=10%  Similarity=0.035  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCch---
Q 011875          304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS---  380 (475)
Q Consensus       304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~---  380 (475)
                      +-+.+|+++.+++++..++.                      .+.++++...++.++|+-+..|....++.++.|++   
T Consensus        80 ~~l~~~~~~~~~g~~~~~~~----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~  137 (475)
T TIGR00924        80 KTMVLGGIVLMLGHFMLAMS----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP  137 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence            34667777777777655432                      12344556677899999999999999999998865   


Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011875          381 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG  455 (475)
Q Consensus       381 ~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~  455 (475)
                      .|+...++++....+|..+|+.+...+.+..      +|          ..-|.+.++.++++.+.++...+.++
T Consensus       138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       138 RRDGGFTLFYMSINIGSFISPLLAGVIAENY------GY----------HVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             cccceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence            3888999999999999999999887765211      22          34555566666666666666665554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00898 2A0119 cation transport protein

Probab=96.68  E-value=0.021  Score=60.65  Aligned_cols=110  Identities=14%  Similarity=0.066  Sum_probs=78.9

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++.+++..+..++..++...+    ..|.++|       +-+.++.++.+++.+..++.                     
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l----~Dr~Grr-------~~~~~~~~~~~i~~~~~~~~---------------------  177 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYL----SDRFGRK-------KVLLLSTLVTAVSGVLTAFS---------------------  177 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHh----hhhccch-------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            345566666666666666554    3443322       22445555555554444332                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                       .+.++++...++.|++.....+....++.+..|++.|+..++++....++|..+++.+...+
T Consensus       178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  239 (505)
T TIGR00898       178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI  239 (505)
T ss_pred             -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             34667778889999999999999999999999999999999999998999998888776554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.65  E-value=0.029  Score=59.83  Aligned_cols=61  Identities=8%  Similarity=-0.135  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      +.++++...++.|+++....+....++.+.+|++.||.+++++.....+|..+++.+...+
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888889999999999999999999999999999999999999999999988877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.64  E-value=0.12  Score=54.54  Aligned_cols=60  Identities=17%  Similarity=0.193  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      |.+.+...-++.|++|.... .....+++..|++.|++++|++..+..+|..+++.++.+.
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888899999999999 9999999999999999999999999999999999999884

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PTZ00207 hypothetical protein; Provisional

Probab=96.63  E-value=0.068  Score=58.13  Aligned_cols=119  Identities=11%  Similarity=0.054  Sum_probs=84.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011875          302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM  381 (475)
Q Consensus       302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~  381 (475)
                      +.+-+.+|.++.+++.+..++...         +       ....+.+.+....++.|+|+....+.....+.+..| +.
T Consensus        90 ~R~vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~  152 (591)
T PTZ00207         90 PRPIFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN  152 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence            344567888888888887766421         1       012356667788899999999999999999999888 67


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011875          382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY  454 (475)
Q Consensus       382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y  454 (475)
                      ||.++|++....++|..+.+.+...+...       +          ...+|++++++.++..++.+...+..
T Consensus       153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-------~----------~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        153 RGAVVAIMKTFTGLGSAILGSIQLAFFSD-------N----------TSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h----------HHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            89999999999999998655544332210       1          23567777877777666666655543

>PRK03893 putative sialic acid transporter; Provisional

Probab=96.62  E-value=0.11  Score=55.02  Aligned_cols=81  Identities=19%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 011875          306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  385 (475)
Q Consensus       306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~  385 (475)
                      +.++.++.+++.+..++.                      .+.++++...++.|++.....+.....+.+..|++.|+..
T Consensus        88 ~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  145 (496)
T PRK03893         88 MVISIVLFSVGTLACGFA----------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKA  145 (496)
T ss_pred             HHHHHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            556666666666655442                      2456677788999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhh
Q 011875          386 STLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       386 ~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +|++....++|..+++.+...+.
T Consensus       146 ~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        146 SGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998887654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.62  E-value=0.62  Score=49.08  Aligned_cols=60  Identities=20%  Similarity=0.222  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee
Q 011875           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ  100 (475)
Q Consensus        35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~  100 (475)
                      -.++-..+..++.-...-.-.++.+...++.      ++|.+..+|..++.|+|.++...+.+.+.
T Consensus       114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~------~ER~~l~s~R~~~~~~g~~l~~~~~~plv  173 (467)
T COG2211         114 YALVTYMLLGLGYTLVNIPYGALGPEITQDP------QERASLTSWRMVFASLGGLLVAVLFPPLV  173 (467)
T ss_pred             HHHHHHHHHHHHHHheeCchhhcchhhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445666777777777778888877654      35999999999999999888766665443

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.62  E-value=0.083  Score=56.35  Aligned_cols=84  Identities=17%  Similarity=0.125  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 011875          306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  385 (475)
Q Consensus       306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~  385 (475)
                      +.++.++.+++....++..                   ...+.+|+...+++.+++-....+...+++.+..|++.|+..
T Consensus        84 ll~~~i~~~~~~~~~a~~~-------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~  144 (491)
T PRK11010         84 LLATQLLLLVAIAAMGFLE-------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAG  144 (491)
T ss_pred             HHHHHHHHHHHHHHHHHcC-------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence            4566666666665554432                   014577778888999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhh
Q 011875          386 STLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       386 ~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +|+......+|..+++.+...+.
T Consensus       145 ~~i~~~g~~lG~llg~~l~~~l~  167 (491)
T PRK11010        145 AAISVLGYRLAMLVSGGLALWLA  167 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988776654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.60  E-value=0.14  Score=52.36  Aligned_cols=62  Identities=16%  Similarity=0.120  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...++.+++.....+...++..+..|++.++..++.+.....++..+++.+.....
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677788899888888888888888889899999999998888888888888776654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.57  E-value=0.051  Score=55.19  Aligned_cols=58  Identities=12%  Similarity=-0.019  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.....+-++.-....+....++.+..|.+.||..+|+.....+.+..+|+++.+...
T Consensus       355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            4456688899999999999999999999999999999999999999999999886544

>PRK12382 putative transporter; Provisional

Probab=96.57  E-value=0.085  Score=53.98  Aligned_cols=119  Identities=11%  Similarity=0.020  Sum_probs=79.8

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+...+..|+..++.    +|.++|       +-+.+|.+..+++.+........     ..         ..
T Consensus        54 g~~~s~~~~~~~i~~~~~G~l~----Dr~g~r-------~~l~~~~~~~~~~~~~~~~~~~~-----~~---------~~  108 (392)
T PRK12382         54 GIAVGIQFLATVLTRGYAGRLA----DQYGAK-------RSALQGMLACGLAGLAYLLAAIL-----PV---------SA  108 (392)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHH----Hhhcch-------HHHHHHHHHHHHHHHHHHhhhcc-----cc---------ch
Confidence            4455666666677777777653    443322       23555655555443322111100     00         01


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      ..+.++++..-++.|+++....|...+.+.+..|++.|+..+|.+......|..+++.++..+.
T Consensus       109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382        109 PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            2356677788899999999999999999999999999999999998888888889888876654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.17  Score=51.85  Aligned_cols=88  Identities=23%  Similarity=0.201  Sum_probs=77.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.++++++-.+=++|..+...+-.++++|.|+++.      +|.+...+---++.+|.++||-.++.+-|..|+.+.|++
T Consensus       158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV  231 (464)
T KOG3764|consen  158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV  231 (464)
T ss_pred             hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence            45677888888899999999999999999998865      488889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011875          112 PAVIMLLSALSFFL  125 (475)
Q Consensus       112 ~~v~~~~~~ivf~~  125 (475)
                      .++.+++..++-++
T Consensus       232 L~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  232 LAIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99888887776444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.51  E-value=0.12  Score=53.16  Aligned_cols=84  Identities=15%  Similarity=0.003  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH
Q 011875          306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  385 (475)
Q Consensus       306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~  385 (475)
                      +.++.++.+++++..++..                   ...+.+++...+++.++......|..-+++.+..|++.|+.+
T Consensus        71 l~~~~~~~~l~~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~  131 (402)
T PRK11902         71 LLLTQVGLAASIAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAG  131 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHH
Confidence            5566667776766554431                   013566667777888899999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhh
Q 011875          386 STLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       386 ~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .++.....++|..+++.+...+.
T Consensus       132 ~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902        132 AAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHH
Confidence            99999888999999988776554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.47  E-value=1.2  Score=46.81  Aligned_cols=164  Identities=12%  Similarity=0.022  Sum_probs=94.4

Q ss_pred             cchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCccccc
Q 011875          267 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS--DDLRAVV  344 (475)
Q Consensus       267 ~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~--~~~~~~~  344 (475)
                      +..++.+.+-+..-+-...+.++.||. ++   +....-+.+|.++.-++++...+.      ...+..+.  ++....-
T Consensus       280 ~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~~  349 (461)
T KOG3098|consen  280 LIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLLF  349 (461)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCccccccc
Confidence            345555555555444333344343332 22   333344666666555554433221      11111111  1111112


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  424 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l  424 (475)
                      .-+...-...++++|+++.+....-+..+....| +-+..+-+++-+..++++-++-......                 
T Consensus       350 ~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~-----------------  411 (461)
T KOG3098|consen  350 TPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL-----------------  411 (461)
T ss_pred             ccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh-----------------
Confidence            2334344566799999999999999999999985 4455777888888888877765333221                 


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011875          425 NKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV  461 (475)
Q Consensus       425 n~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~  461 (475)
                         .+..+...+.+++.+..++++.+.++++..+++.
T Consensus       412 ---~l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k~  445 (461)
T KOG3098|consen  412 ---LLYIYTLGLPIFCVIATTIFFIVAERTQAMEKKL  445 (461)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               1344556677888888899999998886444444

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=96.41  E-value=0.055  Score=55.67  Aligned_cols=84  Identities=12%  Similarity=0.054  Sum_probs=74.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 011875          300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK  379 (475)
Q Consensus       300 ~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~  379 (475)
                      .+|.+=|++|++++++..+..++.                      .|.+.++..+++.|+-+-.-.|......+.--|+
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr  148 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFS----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR  148 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhh----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence            466777899999999998887764                      3566677888999999999999999999999999


Q ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHHH
Q 011875          380 SMSSIASTLSGAGLSAANLVASLIMN  405 (475)
Q Consensus       380 ~~kg~~~g~~~l~~~ig~~l~~~l~~  405 (475)
                      +.||...++|..+..+|+.+.+.+..
T Consensus       149 ~eRG~~~siWn~shNiGGal~~~~~~  174 (448)
T COG2271         149 KERGTWWSIWNTSHNIGGALAPLVAL  174 (448)
T ss_pred             cccCceEEEehhhhhcccchHHHHHH
Confidence            99999999999999999999998884

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.37  E-value=0.87  Score=49.60  Aligned_cols=87  Identities=9%  Similarity=0.056  Sum_probs=56.5

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhH
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~  110 (475)
                      .+...+..|..+.++|.|...- ....++|..+.+       .|..++.+..+..-+...+++.+...+..+.+|+|.|.
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k-------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~  200 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNK-------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY  200 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccc-------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence            3455688899999999887764 455678887542       24444444443333333345555545555679999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011875          111 VPAVIMLLSALSFFL  125 (475)
Q Consensus       111 i~~v~~~~~~ivf~~  125 (475)
                      +.++...++++...+
T Consensus       201 ~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  201 IFIIWSGIALVLIFF  215 (599)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999888887766444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.36  E-value=0.15  Score=52.64  Aligned_cols=108  Identities=15%  Similarity=0.027  Sum_probs=77.5

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+...++.|+..++    .+|.++|       +-+.++.++.+++.+..+...                    
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~l----aDr~grr-------~vl~~~~~~~~~~~~~~~~~~--------------------   89 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAF----ADSFPKG-------RVMFIANGIKLLGCLLMLFGI--------------------   89 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHh----hhccCCc-------hhhHHHHHHHHHHHHHHHHHH--------------------
Confidence            455566666777777877764    3443332       235556555555544332211                    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                        +.   +...+++|+++.+..|...+.+.+..|++.++.++|++.....+|..+|+.++....
T Consensus        90 --~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         90 --HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             --HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11   344688999999999999999999999999999999999988999999998887764

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.30  E-value=0.095  Score=54.21  Aligned_cols=116  Identities=7%  Similarity=-0.091  Sum_probs=79.4

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+..++..|+..++    .+|.++|       +-+.++.++.+++++..++...       .          .
T Consensus        55 g~~~~~~~l~~~~~~~~~G~l----~dr~g~~-------~~l~~~~~~~~~~~~~~~~~~~-------~----------~  106 (417)
T PRK10489         55 GLSVTLTGGAMFIGLMVGGVL----ADRYDRK-------KLILLARGTCGLGFIGLALNAF-------L----------P  106 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhHHH----hhhcCCc-------eEEEehHHHHHHHHHHHHHHHH-------c----------C
Confidence            455566666666666766554    3443322       1244566666666655443210       0          0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      ..+.++++...++.+++..+..+.....+.+..|++.++..+|++....++|..+|+.+...+.
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            1345666677788899999889999999999999999999999998888899988888876654

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.23  E-value=0.1  Score=52.58  Aligned_cols=90  Identities=9%  Similarity=-0.093  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHH--HHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA--STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  424 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~--~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l  424 (475)
                      +.++++..-++++.++....|...+...+..|++.|+..  .+......++|..+++.+.......-      +|     
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~------~~-----  154 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF------GF-----  154 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc------cc-----
Confidence            344455555667777777788888888888887776643  56666667788888887776553210      23     


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011875          425 NKGHYDYYYWLLTALSMANFLYYLACCK  452 (475)
Q Consensus       425 n~~~~~~~f~~la~l~~~~~~~~~~~~~  452 (475)
                           ...|++.+++.++..++.+...+
T Consensus       155 -----~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       155 -----TVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence                 33556666665555554444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.19  E-value=0.068  Score=57.04  Aligned_cols=84  Identities=8%  Similarity=-0.017  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCch--h
Q 011875          304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS--M  381 (475)
Q Consensus       304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~--~  381 (475)
                      +-+.+|.++.+++.+.+++...                    ... .++...+++++|+-+..|....++.++-|++  .
T Consensus        82 ~~~~~g~~~~~~g~~~~~~~~~--------------------~~~-ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~  140 (489)
T PRK10207         82 RTIVLGAIVLAIGYFMTGMSLL--------------------KPD-LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR  140 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--------------------chh-HHHHHHHHHHhccccccCCHHHHHHHhcCCCchh
Confidence            4577888888888776664310                    011 1335678889999999999999999999877  4


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          382 SSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       382 kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      |+..+++++....+|..+|+.+...+.
T Consensus       141 ~~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207        141 LDGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            577899999999999999998887765

>PRK11043 putative transporter; Provisional

Probab=96.17  E-value=0.16  Score=52.19  Aligned_cols=62  Identities=10%  Similarity=-0.026  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...++.+++.....+...+.+.+..|++.++...+......++|..+++.+...+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677788899888888888888999999998888888877777788888887776654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.16  E-value=0.81  Score=47.00  Aligned_cols=67  Identities=9%  Similarity=-0.038  Sum_probs=51.3

Q ss_pred             CCccchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec
Q 011875           28 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD  101 (475)
Q Consensus        28 ~~~~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~  101 (475)
                      +......+|..++.+++.|.|..+...+++++..-+++..    .+|-   |.---..-+|+.++|.+++++-.
T Consensus        99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a----~~rl---nl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738          99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA----AFRL---NLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH----HHHH---HHHHHhhhhHHHHHHHHHHHHHH
Confidence            3445678899999999999999999999999999877543    2233   33344456899999998887654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.15  E-value=0.077  Score=56.43  Aligned_cols=107  Identities=12%  Similarity=0.090  Sum_probs=75.2

Q ss_pred             HhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHH
Q 011875          280 GLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG  359 (475)
Q Consensus       280 pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~  359 (475)
                      |+-..+.-++..|.++|       +-+.+++++.+++.+..++...+-     .-|         ...+++++..-+++|
T Consensus        71 ~ig~~~~G~l~Dr~Grr-------~~l~~~~~l~~i~~~~~a~~~~~~-----~~g---------~~a~~~l~~~R~l~G  129 (490)
T PRK10642         71 PLGGLFFGMLGDKYGRQ-------KILAITIVIMSISTFCIGLIPSYA-----TIG---------IWAPILLLLCKMAQG  129 (490)
T ss_pred             HHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHHHHHHhcccHH-----HHH---------HHHHHHHHHHHHHHH
Confidence            33333334445554433       457778888888877776653210     000         112234677889999


Q ss_pred             HHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       360 ~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      +++-...|.+..++.+..|++.||.+++++.....+|..+++.+..++
T Consensus       130 ~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        130 FSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             hHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888888888887666544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.15  E-value=1.8  Score=43.98  Aligned_cols=87  Identities=20%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccC-CccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~-g~~~~F~  110 (475)
                      ..+.++.+-.++++|.+....-..+++-+-|++        |....-..|-.+.++|+.+++.+.+.+.++. ||+.+.+
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk--------~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~  169 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK--------RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG  169 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc--------chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence            467788888888888888877778877776643        4677778889999999999999988888776 7998888


Q ss_pred             HHHHHHHHHHHHHHhc
Q 011875          111 VPAVIMLLSALSFFLA  126 (475)
Q Consensus       111 i~~v~~~~~~ivf~~~  126 (475)
                      .=++.-++++++.+-.
T Consensus       170 ~WAl~allAl~~WlPq  185 (395)
T COG2807         170 FWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            7777777777766544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.12  E-value=0.68  Score=47.67  Aligned_cols=96  Identities=10%  Similarity=0.097  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchh
Q 011875          351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYD  430 (475)
Q Consensus       351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~  430 (475)
                      ....|++.|+|=-.....++++..+.+|++-|+...++-+.+.=+|..++..+....-             ++....++.
T Consensus        92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL-------------~~~s~~rL~  158 (403)
T PF03209_consen   92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL-------------DPFSPERLI  158 (403)
T ss_pred             HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-------------cccCHHHHH
Confidence            4588899999999999999999999999999999999999998899999887765432             122212233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q 011875          431 YYYWLLTALSMANFLYYLACCKAYGPFKGRVG  462 (475)
Q Consensus       431 ~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~  462 (475)
                         -+....+++..++-++-..+.++|.++..
T Consensus       159 ---~v~~~~a~i~~~l~~ia~wg~E~r~~~~~  187 (403)
T PF03209_consen  159 ---QVIQGVALIALLLNLIALWGQEPRRSRRA  187 (403)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcccCCcccc
Confidence               33334444444444445555555555544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10133 L-fucose transporter; Provisional

Probab=96.08  E-value=0.48  Score=49.71  Aligned_cols=111  Identities=13%  Similarity=-0.013  Sum_probs=78.0

Q ss_pred             ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011875          266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  345 (475)
Q Consensus       266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (475)
                      ++.+...+...+..|+..++    .+|.+.       .+-+.+|+++.+++.+.......                   .
T Consensus        65 l~~~~~~~g~~i~~~~~g~l----~dr~G~-------r~~l~~g~~~~~~~~~l~~~~~~-------------------a  114 (438)
T PRK10133         65 LIQSAFYFGYFIIPIPAGIL----MKKLSY-------KAGIITGLFLYALGAALFWPAAE-------------------I  114 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHHHh-------------------c
Confidence            44455555556666655553    454432       23466788777777754322110                   1


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA  406 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~  406 (475)
                      .+.++++...+++|+|.....+....++.+.+|++.+...++++....++|..+++.++..
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888999999999999999999998888888778888888888888888877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.00  E-value=0.13  Score=60.73  Aligned_cols=63  Identities=22%  Similarity=0.079  Sum_probs=58.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .|.++++..-+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.++.++.
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~  168 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT  168 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            357778888999999999999999999999999999999999999999999999999998765

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=95.94  E-value=0.12  Score=60.73  Aligned_cols=62  Identities=16%  Similarity=-0.045  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.++++...++.|++..+..|...+++.+..|++.|+.++|+.....++|..+|+.++..+.
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            36677788899999999999999999999999999999999999999999999998887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=95.93  E-value=0.19  Score=52.84  Aligned_cols=60  Identities=8%  Similarity=0.133  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      +++++..-++.|++.....|....++.+.+|++.||.++|++.....+|..++..+....
T Consensus       120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  179 (479)
T PRK10077        120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI  179 (479)
T ss_pred             HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667779999999999999999999999999999999999998889988887665443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=95.87  E-value=0.26  Score=52.68  Aligned_cols=117  Identities=10%  Similarity=0.037  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--
Q 011875          304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM--  381 (475)
Q Consensus       304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~--  381 (475)
                      +-+.+|.++.+++....++..                     -+.+++....++++++.-+..|....++.++.|++.  
T Consensus        89 ~~~~~g~~~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~  147 (500)
T PRK09584         89 RVIMLGAIVLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR  147 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh
Confidence            346677777777765554321                     112334466788899999988999999999887543  


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011875          382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF  457 (475)
Q Consensus       382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~  457 (475)
                      ++..+++++....+|..+|+.+...+.+.-      +|          ..-|.+.++.+++..+.+++..+++++.
T Consensus       148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~~  207 (500)
T PRK09584        148 LDGAFTMYYMSINIGSFFSMLATPWLAAKY------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQY  207 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence            445788888899999999998887764211      22          3445555656666666666666666543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=95.81  E-value=0.1  Score=52.61  Aligned_cols=91  Identities=12%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011875          304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS  383 (475)
Q Consensus       304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg  383 (475)
                      +-+.+|.++.+++.+..+......              .......++++...+++|++.....+.....+.+..|++.|+
T Consensus        66 ~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~  131 (394)
T TIGR00883        66 KTLVITLLMMGIGTLLIGLLPSYA--------------TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRG  131 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCChh--------------hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccch
Confidence            345667777777766655432100              000122334667779999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          384 IASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       384 ~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .+++++.....+|..+++.+.....
T Consensus       132 ~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       132 FYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988766543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.71  E-value=0.18  Score=53.20  Aligned_cols=161  Identities=14%  Similarity=0.073  Sum_probs=94.5

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+.+++.-.++.|++..+-    +|.      .+..+-+.+|.+++.+|-++...++..     +            
T Consensus        74 G~viaa~slg~~i~~liF~~Ws----~k~------~~~k~Pli~s~ii~~~g~llY~~l~~~-----~------------  126 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWS----NKT------GSVKKPLIVSFLIAIIGNLLYLALAYV-----P------------  126 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccc----ccc------CCcccCHHHHHHHHHHHHHHHHHHHhc-----c------------
Confidence            4556667888888889888731    222      122344888999999998887666531     0            


Q ss_pred             cchHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC-C
Q 011875          345 QMSAMWQLPYLVLSGLA-MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP-S  422 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~g-El~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~-~  422 (475)
                      +-+.|+++..+++.|+| -.+..--.+.-..+..++++|+++.+  .....+|..+|+.+...+...-  ..+-.|.+ -
T Consensus       127 ~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~--~~~~vlg~ilGp~~q~~f~~Lg--~~G~~i~~~~  202 (488)
T KOG2325|consen  127 NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAAT--SGGFVLGIILGPTIQLAFTPLG--EKGFMILPGL  202 (488)
T ss_pred             cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHh--hhHHHHHHHHhHHHHHHHhhhc--CCceEEcCcc
Confidence            12688899999999999 55554455554555666666655444  4445556666665555443211  11123444 2


Q ss_pred             CCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011875          423 NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK  458 (475)
Q Consensus       423 ~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~  458 (475)
                      .+|.....  =|+.+++.+++.+......|-..+..
T Consensus       203 ~~n~YTap--~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  203 IFNMYTAP--AWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             eEEecchH--HHHHHHHHHHHHHHHHhheeecccCc
Confidence            33422222  25566777777766666665444433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.70  E-value=1  Score=47.66  Aligned_cols=83  Identities=8%  Similarity=0.059  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhH
Q 011875          305 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI  384 (475)
Q Consensus       305 ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~  384 (475)
                      -+.+|++.-.++++..++.+.                       -|++-...+....-.+..|...+++.+++.++-+|.
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~-----------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~  366 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATE-----------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGK  366 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhcc-----------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccc
Confidence            467788888888888777642                       134444455666667889999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhhhc
Q 011875          385 ASTLSGAGLSAANLVASLIMNAVDDI  410 (475)
Q Consensus       385 ~~g~~~l~~~ig~~l~~~l~~~~~~~  410 (475)
                      .+++.....++.+.+++.+.+.+...
T Consensus       367 v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  367 VFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99999999999999999887765543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.70  E-value=0.45  Score=48.96  Aligned_cols=78  Identities=14%  Similarity=0.136  Sum_probs=59.2

Q ss_pred             HHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC---ccchhHHHHHHHHH
Q 011875           42 LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAVIMLL  118 (475)
Q Consensus        42 li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g---~~~~F~i~~v~~~~  118 (475)
                      ++++|-|-| +.-.+..+.-|+++       ++..+..++= .-|+|..+..++.|.+....|   |+.+-.+..+.+++
T Consensus       114 l~G~~GasF-av~m~~~s~~fP~~-------~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v  184 (417)
T COG2223         114 LLGLAGASF-AVGMPNASFFFPKE-------KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI  184 (417)
T ss_pred             HHhccccee-hcccccccccCChh-------hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            444444433 44455667778664       3566666666 899999999999999998999   99999999999999


Q ss_pred             HHHHHHhcCc
Q 011875          119 SALSFFLASP  128 (475)
Q Consensus       119 ~~ivf~~~~~  128 (475)
                      +.+.+++..+
T Consensus       185 ~~v~~~~~~~  194 (417)
T COG2223         185 AAVLAWLGMN  194 (417)
T ss_pred             HHHHHHHHhC
Confidence            8888887654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.69  E-value=0.098  Score=54.24  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhH
Q 011875          306 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSI  384 (475)
Q Consensus       306 i~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~A-P~~~kg~  384 (475)
                      +.+|.++.+++++......        ..        ......+|.+..+++.+++..+..+.-.+...+.+ +++.|+.
T Consensus        73 i~~~~~~~~i~~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~  136 (437)
T TIGR00792        73 LLIGAIPFSIVLVLLFTTP--------DF--------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERES  136 (437)
T ss_pred             HHHhHHHHHHHHHHHHhCC--------CC--------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHH
Confidence            5567777776665554321        00        01134678888889999998888887788888776 5788999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHH
Q 011875          385 ASTLSGAGLSAANLVASLIMN  405 (475)
Q Consensus       385 ~~g~~~l~~~ig~~l~~~l~~  405 (475)
                      ..+.......+|..+++.+..
T Consensus       137 ~~~~~~~~~~~g~~l~~~~~~  157 (437)
T TIGR00792       137 LSTFRRFGATLGGLLVAVIVL  157 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999888888888877766543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=95.66  E-value=3.8  Score=43.79  Aligned_cols=81  Identities=14%  Similarity=0.059  Sum_probs=63.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.+.+.-.+.+++.++...+...+++|.+.++       +|..+-++ +.....|+.+++.+.+|+-+  +|++.+.+
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~-------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~  239 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK-------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWI  239 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc-------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence            4455666666778888888889999999988764       46777777 88888888888888888876  89999998


Q ss_pred             HHHHHHHHHHH
Q 011875          112 PAVIMLLSALS  122 (475)
Q Consensus       112 ~~v~~~~~~iv  122 (475)
                      ..+..++.++.
T Consensus       240 ~~~~~~~~~~~  250 (521)
T KOG0255|consen  240 ISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHH
Confidence            77766666555

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=95.66  E-value=2.5  Score=45.20  Aligned_cols=84  Identities=18%  Similarity=0.270  Sum_probs=61.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~  110 (475)
                      +...+++|-.+.++|.|+..-.+.-+++|.-++       +.|...-+.+.+++++|.+++..+....++. .+|+..++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~  213 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------HIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLG  213 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHH
Confidence            567889999999999999987777777765432       2578888899999999999996544444433 48997777


Q ss_pred             HHHHHHHHHHHH
Q 011875          111 VPAVIMLLSALS  122 (475)
Q Consensus       111 i~~v~~~~~~iv  122 (475)
                      +..+.-++-.+.
T Consensus       214 ~~~i~~~~~~~~  225 (513)
T KOG0254|consen  214 LALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHHH
Confidence            655554444444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.59  E-value=0.13  Score=56.59  Aligned_cols=152  Identities=13%  Similarity=0.080  Sum_probs=94.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHhh----hcCC-----------C--------CCcc--ccccchHH-H
Q 011875          301 SLKLRMGIGLLFSTASMTAWAIVEAA----RRSIAI----NEGI-----------S--------DDLR--AVVQMSAM-W  350 (475)
Q Consensus       301 s~~~ki~~G~~l~~ls~~~~~~~~~~----~~~~~~----~~g~-----------~--------~~~~--~~~~vs~~-w  350 (475)
                      .-++-+++|+++++++.++.++.+..    +.+...    .++-           .        ++..  ...+..+| .
T Consensus       160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  239 (735)
T KOG3626|consen  160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL  239 (735)
T ss_pred             CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence            33566999999999999988876542    211111    0000           0        0111  11222233 4


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHH----HHHHHHHHHHHHhhhhc-cc----CCCCCCCCC
Q 011875          351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL----SAANLVASLIMNAVDDI-TK----RGGNGGWIP  421 (475)
Q Consensus       351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~----~ig~~l~~~l~~~~~~~-~~----~~~~~~w~~  421 (475)
                      ++..-++.|+|+.-+.+.|.+++.+-+-++-..+++|+.+...    ++|.++|+.+.+++.+. ..    ...++.|+.
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG  319 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG  319 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence            4567799999999999999999999999999999999888655    45666666666666544 11    111223331


Q ss_pred             CCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011875          422 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK  458 (475)
Q Consensus       422 ~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~  458 (475)
                      .      -..=|.+.++++++..+-++.+=|.+.+..
T Consensus       320 A------WWlGFLi~g~~~~~~a~p~f~fPk~lp~~~  350 (735)
T KOG3626|consen  320 A------WWLGFLICGALLLFSAVPLFFFPKELPKSQ  350 (735)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence            1      111244567778888887777777776543

>TIGR00889 2A0110 nucleoside transporter

Probab=95.57  E-value=0.027  Score=58.68  Aligned_cols=86  Identities=10%  Similarity=0.097  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhheecc------CCc
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDN------LGW  105 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY-~~iNiG~~ia~~~~~~l~~~------~g~  105 (475)
                      ...+++...+.+++.|...+....++.|.+++       +.|.+++.+++ ...++|+.++|.+.+++.+.      +||
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~  380 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW  380 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence            34566777788888888889999999998864       35888999997 56789999999999998876      468


Q ss_pred             cchhHHHHHHHHHHHHHHHh
Q 011875          106 KVGFGVPAVIMLLSALSFFL  125 (475)
Q Consensus       106 ~~~F~i~~v~~~~~~ivf~~  125 (475)
                      +..|.+.++..+++.+.+..
T Consensus       381 ~~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       381 QTMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99998887776666655544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00897 2A0118 polyol permease family

Probab=95.53  E-value=0.38  Score=49.60  Aligned_cols=113  Identities=16%  Similarity=0.001  Sum_probs=73.8

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+...+...+..|+..++    .+|.+       ..+-+..|.++.+++.+.......                  .
T Consensus        51 g~~~~~~~~~~~i~~~~~g~l----~dr~g-------~k~~l~~~~~~~~~~~~~~~~~~~------------------~  101 (402)
T TIGR00897        51 ASAFTLYGIAAAISAWISGVV----AEIIG-------PLKTMMIGLLLWCVGHAAFIVFGL------------------G  101 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHcC-------cHHHHHHHHHHHHHHHHHHHHHhc------------------c
Confidence            344455555666666666654    34432       223355677777666543322110                  0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHH-HHHHHHHHh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAAN-LVASLIMNA  406 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~-~l~~~l~~~  406 (475)
                      ..+.+.++..+++.+++.....+.....+.+..|++.|+..+|++....++|. .+++.+...
T Consensus       102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897       102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            12455556678888999888888878888889999999999999999888886 467766544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.49  E-value=0.23  Score=52.62  Aligned_cols=116  Identities=12%  Similarity=0.141  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011875          302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM  381 (475)
Q Consensus       302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~  381 (475)
                      ..+-+..+.++.+++-+...+..                    +.+.+.++..=+++|++|-...|.--....+-+|...
T Consensus       102 ~r~v~~~~~~~sa~~t~l~P~aa--------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E  161 (466)
T KOG2532|consen  102 ARRVFFISGLISALLTLLTPLAA--------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE  161 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH--------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH
Confidence            33567788888877766655543                    1444456788899999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011875          382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK  452 (475)
Q Consensus       382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~  452 (475)
                      |++..++.+...-+|+.++..+++..-..+     -||          ...|.+.++++++-.++++.+.+
T Consensus       162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  162 RSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999888899988887777654321     267          23455677777666666555544

>PRK09952 shikimate transporter; Provisional

Probab=95.44  E-value=0.22  Score=52.13  Aligned_cols=108  Identities=10%  Similarity=0.092  Sum_probs=73.6

Q ss_pred             HHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHH
Q 011875          279 IGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLS  358 (475)
Q Consensus       279 ~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~  358 (475)
                      .|+-..+.-++.+|.++       .+-+.+++++.+++.+..++....-     .-|         -.+++.++..-+++
T Consensus        77 ~~~g~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~---------~~~~~~l~~~R~l~  135 (438)
T PRK09952         77 RPLGGVVFGHFGDRLGR-------KRMLMLTVWMMGIATALIGLLPSFS-----TIG---------WWAPVLLVTLRAIQ  135 (438)
T ss_pred             HhhHHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHHHhcCCcHH-----HHH---------HHHHHHHHHHHHHH
Confidence            34444444445555433       2446667777777766655542110     000         01233466677899


Q ss_pred             HHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          359 GLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       359 ~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      |+++-...|....++.+..|++.||.+++......++|..++..+...+
T Consensus       136 G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l  184 (438)
T PRK09952        136 GFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI  184 (438)
T ss_pred             HhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998887766544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=95.31  E-value=0.37  Score=50.20  Aligned_cols=107  Identities=12%  Similarity=0.043  Sum_probs=73.9

Q ss_pred             HhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHH
Q 011875          280 GLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG  359 (475)
Q Consensus       280 pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~  359 (475)
                      |+-..+.-++.+|.++|       +-+.+++++.+++.+..++...+-              .....+..+++..-+++|
T Consensus        77 ~ig~~~~G~l~Dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~R~l~G  135 (432)
T PRK10406         77 PIGGWLFGRIADKHGRK-------KSMLISVCMMCFGSLVIACLPGYE--------------TIGTWAPALLLLARLFQG  135 (432)
T ss_pred             HHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHHHhhcCCch--------------hHHHHHHHHHHHHHHHHH
Confidence            34444444455655433       346677777777776655532100              000124556777889999


Q ss_pred             HHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          360 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       360 ~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      +++-...|....++.+.+|++.||.+++++......|..++..+...+
T Consensus       136 ~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  183 (432)
T PRK10406        136 LSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL  183 (432)
T ss_pred             hhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888888887777665443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=95.25  E-value=1.9  Score=44.58  Aligned_cols=86  Identities=16%  Similarity=0.242  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011875          304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS  383 (475)
Q Consensus       304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg  383 (475)
                      +-+..|+++..+..+.....+.                   +.. +|.  .=++.+++--=+...+=++..+.+|++..+
T Consensus       319 ~vl~~~lvi~~~~~~~~~~~~~-------------------~~~-f~i--~gll~g~s~G~~qA~SRSy~~~lvp~~k~~  376 (438)
T COG2270         319 PVLMIGLVILSIAALYLIFLEG-------------------ELD-FWI--LGLLVGTSLGGAQASSRSYLARLVPKGKEG  376 (438)
T ss_pred             eeehHHHHHHHHHHHHHHHccc-------------------cHH-HHH--HHHHHHHhcchHHHHHHHHHHHhCCCcccc
Confidence            4566677766666555544331                   122 231  225566666666777888999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhhhcc
Q 011875          384 IASTLSGAGLSAANLVASLIMNAVDDIT  411 (475)
Q Consensus       384 ~~~g~~~l~~~ig~~l~~~l~~~~~~~~  411 (475)
                      ...|+|.++.-.++.+|+.+...+-..+
T Consensus       377 ~fFglyaltgra~S~~gp~lv~v~t~iT  404 (438)
T COG2270         377 RFFGLYALTGRAASFLGPFLVAVITQIT  404 (438)
T ss_pred             ceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998876554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.25  E-value=0.96  Score=47.92  Aligned_cols=58  Identities=14%  Similarity=0.079  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011875          348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA  406 (475)
Q Consensus       348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~  406 (475)
                      .+.++...++.|+++.... .....+.+..|++.||..+|++.....+|..+++.+...
T Consensus       124 ~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~  181 (476)
T PLN00028        124 ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL  181 (476)
T ss_pred             HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566788899987644 345677888999999999999886666666666555443

>TIGR00896 CynX cyanate transporter

Probab=94.99  E-value=0.83  Score=45.93  Aligned_cols=108  Identities=13%  Similarity=0.172  Sum_probs=72.2

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      ++..+++.+...+..|+..++.    +|.+.|       +.+.+|.++.+++.+.. ..                     
T Consensus        38 g~~~s~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~-~~---------------------   84 (355)
T TIGR00896        38 GLLTALPVLCFAVLAPLAPWLA----RRFGEE-------RSVAAGLLLIAAGILIR-SA---------------------   84 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HHhCch-------HHHHHHHHHHHHHHHHH-Hh---------------------
Confidence            4555666677777777766643    443322       33556666655554332 11                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                       .+.++++...++.+++..+..+.....+.+..|+ .|+..+|++.....+|..+++.+....
T Consensus        85 -~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        85 -PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2344555667888999988887777777777774 789999999988888988888776554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=94.95  E-value=1.3  Score=46.94  Aligned_cols=81  Identities=15%  Similarity=0.003  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011875          304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS  383 (475)
Q Consensus       304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg  383 (475)
                      +-+.+++++.++..+..++...       +          ...|.+.++...++.|++ ....+.++..+.+..|++.||
T Consensus       101 ~v~~~~~ll~~i~~~~~~~a~~-------~----------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG  162 (462)
T PRK15034        101 RWTVFSTAILIIPCVWLGIAVQ-------N----------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG  162 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-------c----------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH
Confidence            4456676666666665554310       0          014677778889999998 557889999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHH
Q 011875          384 IASTLSGAGLSAANLVASL  402 (475)
Q Consensus       384 ~~~g~~~l~~~ig~~l~~~  402 (475)
                      +++|++.....+|..++..
T Consensus       163 ~A~Gi~~g~G~~G~~l~~~  181 (462)
T PRK15034        163 SALGINGGLGNLGVSVMQL  181 (462)
T ss_pred             HHHHHHHHHHhhHHHHHHH
Confidence            9999985433444444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=94.69  E-value=1.7  Score=44.62  Aligned_cols=89  Identities=10%  Similarity=-0.108  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhh--hHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCc
Q 011875          348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS--SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN  425 (475)
Q Consensus       348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~k--g~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln  425 (475)
                      .+++....++.+..+....|.....+.+..|++-|  +.+.++.....++|..+++.+...+.+.-      +|      
T Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw------  172 (393)
T PRK15011        105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF------  172 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch------
Confidence            34443344555555567788888888877665533  45667778888899999988887764211      33      


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011875          426 KGHYDYYYWLLTALSMANFLYYLACCK  452 (475)
Q Consensus       426 ~~~~~~~f~~la~l~~~~~~~~~~~~~  452 (475)
                          ...|++.+++.++..+..+...|
T Consensus       173 ----~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        173 ----TVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhhcC
Confidence                34566666666665554444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.36  E-value=0.0082  Score=64.74  Aligned_cols=151  Identities=12%  Similarity=0.023  Sum_probs=3.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHhh-----h---cCCC---------C---C----ccccccchHHHHH
Q 011875          301 SLKLRMGIGLLFSTASMTAWAIVEAA----RRSIAI-----N---EGIS---------D---D----LRAVVQMSAMWQL  352 (475)
Q Consensus       301 s~~~ki~~G~~l~~ls~~~~~~~~~~----~~~~~~-----~---~g~~---------~---~----~~~~~~vs~~wli  352 (475)
                      +.++-+++|.++++++.++.++-+..    +.....     .   ....         +   +    .++......++++
T Consensus        66 hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  145 (539)
T PF03137_consen   66 HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFI  145 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHH
Confidence            34577999999999999888754432    111100     0   0011         0   0    0111223456677


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHH----HHHHHhhhhccc--------CCCCCCCC
Q 011875          353 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVA----SLIMNAVDDITK--------RGGNGGWI  420 (475)
Q Consensus       353 ~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~----~~l~~~~~~~~~--------~~~~~~w~  420 (475)
                      ..-+++|+|..-..+.|.+++.+.++++..++|+|+++....+|-.+|    +...+++.+...        ...++.|+
T Consensus       146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv  225 (539)
T PF03137_consen  146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV  225 (539)
T ss_dssp             ------SSS-----------------------------------------------------------------------
T ss_pred             HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH
Confidence            888999999999999999999999999999999999998776665554    544444332221        11122333


Q ss_pred             CCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011875          421 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF  457 (475)
Q Consensus       421 ~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~  457 (475)
                      ...      .-=|.+.+++.++..+-+..+=|++.+.
T Consensus       226 GAW------WLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  226 GAW------WLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             -------------------------------------
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            210      0113346666666666666666655444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR01272 gluP glucose/galactose transporter

Probab=94.23  E-value=0.5  Score=47.16  Aligned_cols=63  Identities=13%  Similarity=0.010  Sum_probs=57.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      -|..+.+..+++++.|-.+.-++.-.++....|++.++..+++-....++|..+++.+...+-
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            357778899999999999999999999999999988999999999999999999999988654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=94.00  E-value=1.4  Score=44.91  Aligned_cols=84  Identities=14%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCc
Q 011875          348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG  427 (475)
Q Consensus       348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~  427 (475)
                      .+|++....+.++......+..-.+..+..+++.++.+.+.......+|..+|+..........      +|        
T Consensus        97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw--------  162 (390)
T TIGR02718        97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ--------  162 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH--------
Confidence            4455555555666666777777778888888888888888888777888888886654433111      33        


Q ss_pred             chhHHHHHHHHHHHHHHHHH
Q 011875          428 HYDYYYWLLTALSMANFLYY  447 (475)
Q Consensus       428 ~~~~~f~~la~l~~~~~~~~  447 (475)
                        ...|++.+++.++..+..
T Consensus       163 --~~~f~~~a~l~~~~~~~~  180 (390)
T TIGR02718       163 --RPAFLLVACVPLASLVCV  180 (390)
T ss_pred             --HHHHHHHHHHHHHHHHHH
Confidence              335666777766655554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=93.88  E-value=1.2  Score=47.95  Aligned_cols=116  Identities=13%  Similarity=0.102  Sum_probs=79.6

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +..+....+..+++.|+-..+.    .|..+|       +-|..+-++.++..+..++...        .|         
T Consensus        48 alv~~a~~LP~~Llsl~aG~la----Dr~drr-------rili~~~~~~~~~~~~L~~l~~--------~~---------   99 (524)
T PF05977_consen   48 ALVQAASTLPILLLSLFAGALA----DRFDRR-------RILILSQLLRALVALLLAVLAF--------FG---------   99 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh----hcccch-------HHHHHHHHHHHHHHHHHHHHHH--------hC---------
Confidence            5567777788888887766643    322111       2233344444433333333321        11         


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      ..++|.++..-++.+++..+..|.-.+.+-++.|++.-....++......++..+|+.+++.+-
T Consensus       100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv  163 (524)
T PF05977_consen  100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV  163 (524)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            3677777788899999999999999999999999999888888888888888888877776543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=93.80  E-value=1.5  Score=44.97  Aligned_cols=56  Identities=5%  Similarity=-0.123  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          351 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       351 li~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .+...++.+++.....|...+++.+..+++  +..+|......++|..+++.++..+.
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhhhh
Confidence            345567788888888888877777765543  34555555556677777777766543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=93.61  E-value=1.8  Score=46.28  Aligned_cols=86  Identities=9%  Similarity=0.067  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhcCch--hhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhH
Q 011875          354 YLVLSGLAMAFNMIGQTEFYYTELPKS--MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY  431 (475)
Q Consensus       354 ~yvl~~~gEl~~~p~gle~~~~~AP~~--~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~  431 (475)
                      ...+..+|--+..|...+++.++-|++  .|+...++++....+|..+++.+...+.+..      +|          ..
T Consensus       106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~  169 (493)
T PRK15462        106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AM  169 (493)
T ss_pred             HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HH
Confidence            334455665566676678888888875  7888999999988999999998887764211      23          33


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC
Q 011875          432 YYWLLTALSMANFLYYLACCKAYG  455 (475)
Q Consensus       432 ~f~~la~l~~~~~~~~~~~~~~y~  455 (475)
                      -|.+.++.++++.+.++...|++.
T Consensus       170 ~F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        170 GFGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhc
Confidence            455555555666666655454543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.60  E-value=0.42  Score=48.87  Aligned_cols=128  Identities=8%  Similarity=-0.019  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCch---h
Q 011875          305 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS---M  381 (475)
Q Consensus       305 ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~---~  381 (475)
                      -+.+|.++..+|.+++.+...      +. .      .....+...+.....++++|.-++-|....+..+|-+++   .
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~------~~-~------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~   69 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAI------PP-S------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR   69 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHT------SS-S------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred             hhhHHHHHHHHHHHHhHHHHh------cc-h------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence            366788888888877554421      00 0      011234555668888999999999999999999997766   3


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011875          382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV  461 (475)
Q Consensus       382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~  461 (475)
                      +...-..|+....+|..++..+...+++--      +          ....|++.++.++++.+.|+...++|++..+..
T Consensus        70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~~------~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~  133 (372)
T PF00854_consen   70 RDSFFNWFYWGINIGSLFSPTLVPYIQQNY------G----------WFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPG  133 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S----
T ss_pred             hhhhHHHHHHHHhhhhHhhcccchhhcccc------c----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccC
Confidence            444555677888899999877665554210      2          345778888888999999998888988875444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=92.35  E-value=2.6  Score=40.83  Aligned_cols=121  Identities=10%  Similarity=0.076  Sum_probs=74.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh
Q 011875          302 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM  381 (475)
Q Consensus       302 ~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~  381 (475)
                      |..-..+|.++..+++......-.         |.      ..+.+.|.+.....+.+.|..+.....+--..+.-|+ .
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~---------~~------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~  128 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVS---------GR------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S  128 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh---------Cc------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence            333456777777777765554321         10      0124444444555666778777777777777788896 6


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011875          382 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG  455 (475)
Q Consensus       382 kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~  455 (475)
                      ||...|+--...+++..+=..+...+.            ++     +.+.|..+++....+..++.....|...
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~f------------~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAFF------------GD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHHc------------CC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            999999988888888877666555443            12     1345667777766655554444444443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=92.16  E-value=2.2  Score=45.64  Aligned_cols=107  Identities=14%  Similarity=0.044  Sum_probs=80.7

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +|+.+...+...+..++..++.    ++.++|       +-+.++.++..++.++.+..                     
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~----d~~GRk-------~~l~~~~~~~~iG~ii~~~a---------------------  139 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLG----DRIGRK-------KTLLLAVVLFLIGAIIIALA---------------------  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhhhH-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            5677777776667767666643    333222       33566666666666555543                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM  404 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~  404 (475)
                       .++++++..-++.|+|=-+.+....-+..+.||++.||.+.++..+...+|-.++-.++
T Consensus       140 -~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~  198 (513)
T KOG0254|consen  140 -PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN  198 (513)
T ss_pred             -hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence             36788999999999999999999999999999999999999999999999888884333

>PRK15075 citrate-proton symporter; Provisional

Probab=91.71  E-value=2.9  Score=43.46  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011875          304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS  383 (475)
Q Consensus       304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg  383 (475)
                      +-+..++++.+++.+..++......              .......+++..-++.|+++-...|....++.+..|++.|+
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg  152 (434)
T PRK15075         87 KGLIVTLSIMASGTLLIAFVPGYAT--------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG  152 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHH--------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccch
Confidence            3466677777777666555421000              00001123455568899999988888889999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          384 IASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       384 ~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      .+++++.....+|..+++.++..+
T Consensus       153 ~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        153 FYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998877777766666655543

>PRK09528 lacY galactoside permease; Reviewed

Probab=91.11  E-value=0.22  Score=51.60  Aligned_cols=84  Identities=11%  Similarity=0.054  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHH-HHHHHHHHHHHHhhhhhheeccCCccchhHHH
Q 011875           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (475)
Q Consensus        34 ~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~-fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~  112 (475)
                      +.++....+.+++.+...+....++.+.++++.       +...+.. +..+.++|+.+++.+.+++.+..||+..|.+.
T Consensus       316 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~  388 (420)
T PRK09528        316 LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL-------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL  388 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence            445555666777777777777777777775432       3334433 55678899999999999999999999999987


Q ss_pred             HHHHHHHHHHHH
Q 011875          113 AVIMLLSALSFF  124 (475)
Q Consensus       113 ~v~~~~~~ivf~  124 (475)
                      ++..++..++.+
T Consensus       389 ~~~~~i~~~~~~  400 (420)
T PRK09528        389 GGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHH
Confidence            777666655544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=90.95  E-value=14  Score=40.35  Aligned_cols=111  Identities=12%  Similarity=0.102  Sum_probs=67.6

Q ss_pred             CCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 011875          264 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV  343 (475)
Q Consensus       264 ~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~  343 (475)
                      ..|+...+.+..-+..|++.++..-+-||           .-+..|.++..++.++.+-.+                   
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~-------------------  129 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ-------------------  129 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC-------------------
Confidence            35777777777777778887754333222           235667777777776655332                   


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          344 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       344 ~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                         ++--++-..++.|+|--..... ...+.+..|.+.|....++.....-+....|+.+.+.+.
T Consensus       130 ---~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  130 ---NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             ---cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence               1222456677777775555543 344788889999987776655544444445666665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=90.72  E-value=4.4  Score=43.11  Aligned_cols=58  Identities=17%  Similarity=0.127  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM  404 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~  404 (475)
                      +..-++..-++.|+..-+......-+....||++.||.+-.+.-+...+|..++..++
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            3444778889999999999999999999999999999999998888888888886554

>PRK09669 putative symporter YagG; Provisional

Probab=90.68  E-value=0.46  Score=49.67  Aligned_cols=74  Identities=7%  Similarity=-0.018  Sum_probs=57.1

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCC-cchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCcc
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT-KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK  106 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~-~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~  106 (475)
                      +.+.+++...+.++|.|..-+...++.+|..|.++.+ ++ ++....|+.+.++.++|..+++.+.+++-+..||.
T Consensus       318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~-r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGR-RLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3456677778899999999999999999998754321 21 23345678899999999999999998877666663

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=90.63  E-value=0.62  Score=49.58  Aligned_cols=86  Identities=24%  Similarity=0.326  Sum_probs=73.9

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC-ccchhHH
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGV  111 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g-~~~~F~i  111 (475)
                      .+.+++.=.++++..|...+..-++.++..+++       +...+|.+|.+.--..+++||++.+.+.+..| .+++|..
T Consensus       380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g-------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~  452 (477)
T PF11700_consen  380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG-------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF  452 (477)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            344666666899999999999999999998764       35899999999999999999999999988776 8899998


Q ss_pred             HHHHHHHHHHHHHh
Q 011875          112 PAVIMLLSALSFFL  125 (475)
Q Consensus       112 ~~v~~~~~~ivf~~  125 (475)
                      -.+.++++++++..
T Consensus       453 l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  453 LLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88888888887754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=90.36  E-value=3  Score=43.58  Aligned_cols=97  Identities=11%  Similarity=0.031  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHH
Q 011875          355 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYW  434 (475)
Q Consensus       355 yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~  434 (475)
                      -.+++..+.-..|+|.|+..+..=+...+.-.|+-.   ..|...+..+....+...+..+..+|-       +...  +
T Consensus       366 ~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~---~~gq~f~~~~~~~~~~~~~~~~~~~~~-------~~~~--i  433 (480)
T KOG2563|consen  366 CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLN---LSGQIFGVILVFIMGILAEDLGPPGNT-------FPAN--I  433 (480)
T ss_pred             HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEE---eehhHHHHHHHHHHHHHhhccCCCCCC-------ccch--h
Confidence            367778888889999999988765555566666543   234444444333322211111111110       1112  2


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCcCCCCC
Q 011875          435 LLTALSMANFLYYLACCKAYGPFKGRVGT  463 (475)
Q Consensus       435 ~la~l~~~~~~~~~~~~~~y~~~~~~~~~  463 (475)
                      .++..+++..++-.++...|+|++.+.+.
T Consensus       434 ~~~~~~~l~~~lva~~r~~y~R~~~e~~~  462 (480)
T KOG2563|consen  434 FLTVSALLGAILVAFFRPDYRRLRAEAGN  462 (480)
T ss_pred             HhHHHHHHHHHHHhhhhhhHHhHhhhhcc
Confidence            34455555566667778888888877754

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=90.20  E-value=1.5  Score=44.82  Aligned_cols=102  Identities=13%  Similarity=0.078  Sum_probs=70.2

Q ss_pred             HHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHH
Q 011875          274 TLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP  353 (475)
Q Consensus       274 ~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~  353 (475)
                      .=.+-.|+...    +-.++++|   |    -+.+|.+..+++.+..+...                      +...++.
T Consensus        80 lQ~~sS~~~G~----~SD~yGRk---p----vll~c~~~va~s~ll~~~S~----------------------~F~afv~  126 (451)
T KOG2615|consen   80 LQFISSPLWGC----LSDRYGRK---P----VLLACLIGVALSYLLWALSR----------------------NFAAFVL  126 (451)
T ss_pred             HHHHhhhhhhh----hhhhhCch---H----HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH
Confidence            33444454444    44555544   2    35667777777666655432                      1223455


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 011875          354 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD  409 (475)
Q Consensus       354 ~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~  409 (475)
                      .=++.|+..-.++ ..-+.+.+.++++.|++.|+....+.++|..+|+.++.....
T Consensus       127 aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  127 ARFLGGIFKGNLS-VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHhhhhccCchH-HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            5667777776666 457889999999999999999999999999999999887654

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=90.18  E-value=8.2  Score=34.49  Aligned_cols=62  Identities=11%  Similarity=0.067  Sum_probs=54.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      .+.+.++|.-++.|+|+.+.....-.+..+.+.++.+++..|+++.....+..+|+.+.-.+
T Consensus        87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999988888888887765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00806 rfc RFC reduced folate carrier

Probab=89.95  E-value=30  Score=36.92  Aligned_cols=83  Identities=11%  Similarity=0.026  Sum_probs=64.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchh--
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF--  109 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F--  109 (475)
                      ....+.+.-++.++|.|..- .....+..-+++       ++|.++.+++-.+.++|.++++.+++++. .+||+.-+  
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~L  184 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTL  184 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHH
Confidence            35566777788999999988 888889988875       35899999999999999999999999854 67886433  


Q ss_pred             -HHHHHHHHHHHHHH
Q 011875          110 -GVPAVIMLLSALSF  123 (475)
Q Consensus       110 -~i~~v~~~~~~ivf  123 (475)
                       .++...+.+++++=
T Consensus       185 n~Isl~s~~~a~~~a  199 (511)
T TIGR00806       185 NIISLVFMTFSVFLA  199 (511)
T ss_pred             HHHHHHHHHHHHHHH
Confidence             35555566665553

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=89.85  E-value=17  Score=37.67  Aligned_cols=90  Identities=12%  Similarity=0.072  Sum_probs=68.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 011875          300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK  379 (475)
Q Consensus       300 ~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~  379 (475)
                      .+..+-+.+|+.+.+++..+..-...                   .-++-..+...++++.|=-+.-.++-.++..+.|+
T Consensus        75 ~gyk~gi~lgL~l~avg~~lF~pAa~-------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~  135 (422)
T COG0738          75 LGYKAGIVLGLLLYAVGAALFWPAAS-------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKP  135 (422)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhh-------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence            34445688898888888765432211                   12333455667889999999999999999999999


Q ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          380 SMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       380 ~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +-.+.=|.+-....++|..+++.+++..-
T Consensus       136 ~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738         136 ESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            88888888888889999999998886544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=89.82  E-value=5.5  Score=41.28  Aligned_cols=94  Identities=19%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             hhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHH
Q 011875          281 LYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL  360 (475)
Q Consensus       281 l~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~  360 (475)
                      +..++..|++-++      .+-..|+.+..+++.+||++.++.+                      ++++-+..-++.++
T Consensus        73 l~~Kl~aP~fi~~------v~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~  124 (402)
T PF02487_consen   73 LLVKLIAPFFIHR------VPYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASL  124 (402)
T ss_pred             HHHHHHhHhhhhh------ccchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhh
Confidence            4445566665432      4667899999999999998765532                      23444455566666


Q ss_pred             HHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          361 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       361 gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      +--+...+-+++....-+     ...+.|...+|.|+.+|.......
T Consensus       125 ssg~GE~tfL~lt~~y~~-----~~l~~wssGTG~aGl~Ga~~y~~l  166 (402)
T PF02487_consen  125 SSGLGEVTFLSLTHFYGK-----SSLSAWSSGTGGAGLVGALYYLGL  166 (402)
T ss_pred             hhhhhHHHHHHHHHhcCc-----cccccccCCcChhhHHHHHHHHHH
Confidence            655555566666554432     356888888999999988765443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK10429 melibiose:sodium symporter; Provisional

Probab=89.80  E-value=5.1  Score=42.30  Aligned_cols=57  Identities=14%  Similarity=-0.034  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc-CchhhhHHHHHHhHHHHHHHHHHHHH
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSIASTLSGAGLSAANLVASLI  403 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~A-P~~~kg~~~g~~~l~~~ig~~l~~~l  403 (475)
                      ..+|.+..|++..++--+..+.-.++..+++ .++.|+...+.-.....+|..+.+.+
T Consensus       105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429        105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888899999998899999999999998 58888888886455556665555443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=89.77  E-value=4.1  Score=42.87  Aligned_cols=123  Identities=14%  Similarity=0.050  Sum_probs=69.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 011875          300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK  379 (475)
Q Consensus       300 ~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~  379 (475)
                      .+...|+..++++..+-++...+.-. +       +      .......+..+..-++.+++..+...+.+.++...-|+
T Consensus        72 i~~~~Ri~~~lv~~~~~~~~~~~l~~-~-------~------~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~  137 (437)
T TIGR00939        72 IPVTVRLLGGLVILLVVVILVMVLVK-V-------Q------TSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST  137 (437)
T ss_pred             cCccchhHHHHHHHHHHHHHHhheee-e-------c------CCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH
Confidence            56667899887765555544433211 0       0      00112344445666778888888888888888866654


Q ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCC--CcCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011875          380 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN--INKGHYDYYYWLLTALSMANFLYYLACC  451 (475)
Q Consensus       380 ~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~--ln~~~~~~~f~~la~l~~~~~~~~~~~~  451 (475)
                           +++.+....|+++.++..+.-+... .        .+++  ..++ ...||.+-+++.++..+.|..+.
T Consensus       138 -----~~~a~~~G~g~aGv~~s~~~ii~~a-~--------~~~~~~~~~~-a~~YF~~a~~v~l~~i~~~~~l~  196 (437)
T TIGR00939       138 -----YSSAVMSGQGLAGVLTSLAMILVKA-S--------GNDSHGLKKS-ALGYFGTPCVVQLICIVCYLLLP  196 (437)
T ss_pred             -----HHHHHHhcchhHHHHHHHHHHHHHH-h--------cCCccchhhh-hhhHHHHHHHHHHHHHHHHHHHh
Confidence                 4444555577777776655433321 1        1111  2222 33455555666777777776654

>PTZ00207 hypothetical protein; Provisional

Probab=89.52  E-value=36  Score=37.27  Aligned_cols=83  Identities=13%  Similarity=0.137  Sum_probs=57.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHH-HhhhhhheeccCCccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV-AVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~i-a~~~~~~l~~~~g~~~~F~  110 (475)
                      +.+.+++...+.++|.|.+-+.......+.|++        +|.....+...+.++|+.+ +++...++.+  +|+..|.
T Consensus       119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~--------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS--------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            567778888888999988888888888888742        4788999999999999975 5655556553  4555555


Q ss_pred             HHHHH-HHHHHHHHH
Q 011875          111 VPAVI-MLLSALSFF  124 (475)
Q Consensus       111 i~~v~-~~~~~ivf~  124 (475)
                      +.++. .+++++.+.
T Consensus       189 ~l~vl~~vv~ll~~~  203 (591)
T PTZ00207        189 FLMSFALVVGILAIV  203 (591)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            44433 333333333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=89.06  E-value=2.4  Score=43.98  Aligned_cols=116  Identities=15%  Similarity=0.142  Sum_probs=74.2

Q ss_pred             HHHHHHhhhhhHhhhhhhccCC---CCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHH
Q 011875          275 LTIWIGLYDRAVLPLASKIKGK---PCQ-LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW  350 (475)
Q Consensus       275 iii~~pl~~~~~~p~~~~~~~~---~~~-~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~w  350 (475)
                      +++..++.|.+..|+.-....|   +.| .+|  =+.+|.++.+++++.+....-        ++      ........|
T Consensus        42 i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp--~~l~g~i~~~~~~~llf~~~p--------~~------~~~~~~~~~  105 (428)
T PF13347_consen   42 ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRP--WILIGAILLALSFFLLFSPPP--------AG------LSFTAKLVW  105 (428)
T ss_pred             HHHHHHHhhhhcCCcEEEEEeeecccccccce--EeehhhHHHHHHHHHhhcccc--------ch------hhhhhHHHH
Confidence            4445566666666654332221   101 111  144688888888776654310        00      001246778


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhcC-chhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 011875          351 QLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIMNA  406 (475)
Q Consensus       351 li~~yvl~~~gEl~~~p~gle~~~~~AP-~~~kg~~~g~~~l~~~ig~~l~~~l~~~  406 (475)
                      +...|++..++--+....-.+...+.+| ++.|....+.-.+...+|+.+.+.+...
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~  162 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI  162 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            8899999999999999999999999998 4688888888777777888655554443

>PRK11462 putative transporter; Provisional

Probab=88.91  E-value=13  Score=39.17  Aligned_cols=57  Identities=9%  Similarity=-0.027  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-chhhhHHHHHHhHHHHHHHHHHHHHH
Q 011875          348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIM  404 (475)
Q Consensus       348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP-~~~kg~~~g~~~l~~~ig~~l~~~l~  404 (475)
                      ..|....|++..++--+....-.++....++ ++.|+..++.......+|..+++.+.
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788899999999999999999999999988 88999999988888888887776654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=87.55  E-value=1.2  Score=45.35  Aligned_cols=84  Identities=12%  Similarity=0.045  Sum_probs=61.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhheeccCCccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY-~~iNiG~~ia~~~~~~l~~~~g~~~~F~  110 (475)
                      ..+.++..-.+.+++.|.+-+....++.++ +++       ++..+...+. .+..+|..+++.++|++.|++|+ ..|.
T Consensus       292 ~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~-------~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~  362 (382)
T TIGR00902       292 AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS-------EIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV  362 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence            345666677888999999999988888875 332       2455555554 36779999999999999999996 6677


Q ss_pred             HHHHHHHHHHHHHH
Q 011875          111 VPAVIMLLSALSFF  124 (475)
Q Consensus       111 i~~v~~~~~~ivf~  124 (475)
                      +.++..++++++..
T Consensus       363 ~~~~~~~~~~~~~~  376 (382)
T TIGR00902       363 FMAIIAAAAFFLIP  376 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77766666665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=86.88  E-value=8.5  Score=39.12  Aligned_cols=60  Identities=12%  Similarity=-0.142  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.|.++....+.+++.....|...+.+.+..+  .++..+|......++|..+|+.++....
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l~  152 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKLV  152 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            35555556677788877777776666555533  3455555556666777777777776654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=85.32  E-value=0.22  Score=53.77  Aligned_cols=93  Identities=14%  Similarity=0.286  Sum_probs=2.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheec----------
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD----------  101 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~----------  101 (475)
                      ....+++|-.++++|..-+-+--.+++-|-.+++       +-.-+..++|..-.+|..+|.++++..-+          
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~-------~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~  212 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK-------NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPP  212 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeeccccccc-------cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccc
Confidence            4677888888888888876665555554444332       34567788999999999999888775421          


Q ss_pred             -----------cCC-ccchhHHHHHHHHHHHHHHHhcCccEe
Q 011875          102 -----------NLG-WKVGFGVPAVIMLLSALSFFLASPFYV  131 (475)
Q Consensus       102 -----------~~g-~~~~F~i~~v~~~~~~ivf~~~~~~~~  131 (475)
                                 .+| ||+||++.++..++..+.++..-|+++
T Consensus       213 ~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  213 DGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             ------------------------------------------
T ss_pred             cCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence                       134 999999999888887777766544443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=85.20  E-value=13  Score=39.02  Aligned_cols=57  Identities=19%  Similarity=0.194  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhh---cCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          351 QLPYLVLSGLAMAFNMIGQTEFYYTE---LPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       351 li~~yvl~~~gEl~~~p~gle~~~~~---AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .....++.++|..+.....-+.+.+.   -|++ +|..++..+...++|+.++..+++...
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~  148 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLL  148 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            34455666777777777666665554   4666 888999888888999999887775543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09848 glucuronide transporter; Provisional

Probab=84.99  E-value=1.6  Score=45.73  Aligned_cols=90  Identities=18%  Similarity=0.202  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhhccCCCCCCC-cchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCcc-----
Q 011875           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT-KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK-----  106 (475)
Q Consensus        33 ~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~-~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~-----  106 (475)
                      .+.+++++.+.++|.|...+...++.+|..++++.+ ++ ++...+++.+-++.++|..+++.+.+.+-+..||.     
T Consensus       319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~-r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~  397 (448)
T PRK09848        319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGV-RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQ  397 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence            456677788899999999999999999987654321 11 23466678899999999999988887765444442     


Q ss_pred             ---------chh-HHHHHHHHHHHHHH
Q 011875          107 ---------VGF-GVPAVIMLLSALSF  123 (475)
Q Consensus       107 ---------~~F-~i~~v~~~~~~ivf  123 (475)
                               ..+ .+|+++++++++++
T Consensus       398 ~~~~~~~i~~~~~~~p~~~~~~~~~~~  424 (448)
T PRK09848        398 TPEVIMGIRTSIALVPCGFMLLAFVII  424 (448)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     222 45667676666655

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=83.64  E-value=28  Score=35.62  Aligned_cols=85  Identities=15%  Similarity=0.162  Sum_probs=65.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCc
Q 011875          300 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK  379 (475)
Q Consensus       300 ~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~  379 (475)
                      +++-+-+..++++.+++..+       |.      .          .+.+-+...-++.+.|=..+.+..-+++=+.-|+
T Consensus        74 ~g~er~l~~~Llli~~G~~i-------R~------~----------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk  130 (395)
T COG2807          74 FGEERSLFLALLLIAAGILI-------RS------L----------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK  130 (395)
T ss_pred             HhhHHHHHHHHHHHHHHHHH-------Hh------c----------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc
Confidence            46667777777776665432       21      0          2455567778999999999999999999999998


Q ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          380 SMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       380 ~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      +.- .+||+|..+.++|..+++.+...+.
T Consensus       131 ~~~-~mtglYs~sl~~~aaLaa~lavpla  158 (395)
T COG2807         131 RVG-LMTGLYSTSLGAGAALAAALAVPLA  158 (395)
T ss_pred             chh-hHHhHHHHHHHHHHHHHhhhhhHHH
Confidence            875 9999999999999999987765543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=83.36  E-value=49  Score=32.98  Aligned_cols=85  Identities=8%  Similarity=0.094  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHH
Q 011875          353 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYY  432 (475)
Q Consensus       353 ~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~  432 (475)
                      ....++|++--++.-..--.+..+.|++.-|+.-|....-..+|-.+.+++...+.+.+   +  +    +.   .++.|
T Consensus       357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~---g--~----y~---~le~f  424 (459)
T KOG4686|consen  357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD---G--S----YD---NLEAF  424 (459)
T ss_pred             HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC---C--c----hh---hHHHH
Confidence            34566777766666666677889999999999999988888888888888877765321   1  1    11   26778


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011875          433 YWLLTALSMANFLYYLA  449 (475)
Q Consensus       433 f~~la~l~~~~~~~~~~  449 (475)
                      |.....+++....+.+.
T Consensus       425 fl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  425 FLIIGLMALTSVGILFY  441 (459)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88777777766655443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=81.12  E-value=63  Score=34.27  Aligned_cols=46  Identities=7%  Similarity=-0.073  Sum_probs=37.9

Q ss_pred             HHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          363 AFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       363 l~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      ......+++++++.+.++-|+..+|+-..+.+.+..+++.+++...
T Consensus       127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3445578888999999999999999999988888888888776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	475
2xut_A	524	Proton/peptide symporter family protein; transport	3e-73
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	3e-06

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  239 bits (612), Expect = 3e-73
 Identities = 63/429 (14%), Positives = 146/429 (34%), Gaps = 34/429 (7%)

Query: 31  SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 90
             +   Y    L++LGSGGI+    +F  +Q D+ + + ++ A    F  +Y  ++  S 
Sbjct: 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA----FDMFYFTINFGSF 162

Query: 91  VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVAS 150
            A   +  +  N G  V FG+P V+M ++ + F+L    Y+          G   V+ ++
Sbjct: 163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSA 222

Query: 151 FKNRRTKLPTQ----ATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASN 206
              +           A           + +     +  L  A +            +   
Sbjct: 223 LLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLER 282

Query: 207 PNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASSMDRHVTPNFEIPSG 265
                    V+ ++++++++ +++          Q +S  +LQA+ M +           
Sbjct: 283 ARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFEPA 338

Query: 266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 325
                  L + + I   +  + P   ++  K    +   +MG G+  +  S      ++ 
Sbjct: 339 MMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQL 395

Query: 326 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 385
                               +S  WQ+    L             EF Y++ PK+M    
Sbjct: 396 MM-------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442

Query: 386 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 445
            +     ++  NL   L   +V   T        + + ++   +  +++     ++   +
Sbjct: 443 MSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILAAI 497

Query: 446 YYLACCKAY 454
            +    ++Y
Sbjct: 498 VFALYARSY 506

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 17/97 (17%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 36  LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 95
           L+ +  L+ +G+G ++ +         D+ D  +  G     FS +   ++  + +A   
Sbjct: 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG-----FSIFVFGINLGAFIAPLI 165

Query: 96  IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK 132
           +   Q+  G+ V F + A+ M +  L ++      + 
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	475
2xut_A	524	Proton/peptide symporter family protein; transport	99.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.81
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.23
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.79
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.57
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.43
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.1
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.94
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.87
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.81
2xut_A	524	Proton/peptide symporter family protein; transport	97.46
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.38
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	95.36
2cfq_A	417	Lactose permease; transport, transport mechanism,	93.24

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.88  E-value=1.3e-22  Score=214.01  Aligned_cols=379  Identities=17%  Similarity=0.247  Sum_probs=234.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.|...|...++++|.+++++.    .+..+.|++++.+.|+|..+++.+.+++.+..||+..|.+
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~  183 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK----SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI  183 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT----THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            466788889999999999999999999999987653    3457889999999999999999999999988999999999


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhh----------ccCCCccccc----
Q 011875          112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMY----------HHGKGSMRLM----  177 (475)
Q Consensus       112 ~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~~~----  177 (475)
                      .++..+++++.++..++++++.+|++++.....+.+..+.+++..+.+ +. ....          ..+.......    
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (524)
T 2xut_A          184 PGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NI-GLVLALIGGVSAAYALVNIPTLGIVAGL  261 (524)
T ss_dssp             HHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HH-HHHHHHHHHHHHHHTGGGTTTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-cc-chhhhhhhhhhhhhhhcccchhhhhhhh
Confidence            999988888877766555544344433333333333333332211000 00 0000          0000000000    


Q ss_pred             ---------CCccchh--hhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHH
Q 011875          178 ---------PSENLRF--LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFL  245 (475)
Q Consensus       178 ---------~~~~~~~--ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~  245 (475)
                               ......|  +|.++.                   .++..+.++.|+.+..+++++...+++..+.| .+.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (524)
T 2xut_A          262 CCAMVLVMGFVGAGASLQLERARK-------------------SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTW  322 (524)
T ss_dssp             HHHHHHHHHHHHTGGGTHHHHSCC-------------------SCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHH
T ss_pred             hhhhhhhhcccccchhhHHhhhhc-------------------cccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence                     0000011  111100                   01122334556677777888888888888888 7776


Q ss_pred             HHHHHhcCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 011875          246 VLQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA  325 (475)
Q Consensus       246 ~~q~~~~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~  325 (475)
                      ..+..+++.+.   + ++.+++..++++..++..|+.+++..|..+|++.+   +++.+++.+|+++.+++++..+..+.
T Consensus       323 ~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~  395 (524)
T 2xut_A          323 ILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQL  395 (524)
T ss_dssp             HHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTT
T ss_pred             HHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666655332   1 36677888888999999999999877777765444   67788899999999988876655431


Q ss_pred             HHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHH
Q 011875          326 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMN  405 (475)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~  405 (475)
                      .+             +.....+.+|+++.+++.++++.+..|...+++.+.+|+++||.++|++....++|+.+++.+..
T Consensus       396 ~~-------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g  462 (524)
T 2xut_A          396 MM-------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANV  462 (524)
T ss_dssp             TT-------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHH
T ss_pred             Hh-------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            10             00123678899999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhcccCCCCCCCCCC-CCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011875          406 AVDDITKRGGNGGWIPS-NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV  461 (475)
Q Consensus       406 ~~~~~~~~~~~~~w~~~-~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~  461 (475)
                      .+.+.+    +.+|.++ +++  ...+.|++.+++++++.++++++.++++++++++
T Consensus       463 ~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (524)
T 2xut_A          463 SVKSPT----VTEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR  513 (524)
T ss_dssp             HTTSCH----HHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             Hhcccc----ccccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence            765321    0123211 111  1123377888888888888888888777665443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.81  E-value=1.9e-18  Score=180.56  Aligned_cols=353  Identities=16%  Similarity=0.135  Sum_probs=227.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.|...|...++++|.+++++.     +|..++++++.+.|+|..+++.+.+++.+..||++.|.+
T Consensus       107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~  181 (491)
T 4aps_A          107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL  181 (491)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            456788889999999999999999999999987653     588899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCccEeecC--CCCCCh--hhHHHHHH--------------HHHhhCCCCCCCcccchhhccCCCc
Q 011875          112 PAVIMLLSALSFFLASPFYVKSK--ANTSLL--PGLTQVLV--------------ASFKNRRTKLPTQATEEMYHHGKGS  173 (475)
Q Consensus       112 ~~v~~~~~~ivf~~~~~~~~~~~--p~~spl--~~~~~v~~--------------~a~~~~~~~~~~~~~~~~~~~~~~~  173 (475)
                      .++..+++++.++..++++.+++  +..++.  .+..+...              .....+.....  . .......   
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~~---  255 (491)
T 4aps_A          182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLP--A-YINLLTI---  255 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTT--H-HHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccc--c-chhhhhH---
Confidence            99888888877765433322111  111111  11111000              00001000000  0 0000000   


Q ss_pred             ccccCCccchhhhhhhhccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHh-
Q 011875          174 MRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQ-SSFLVLQASS-  251 (475)
Q Consensus       174 ~~~~~~~~~~~ld~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q-~s~~~~q~~~-  251 (475)
                           ............                .|+. ......++++..+..++++...++|..+.+ .+.+..+..+ 
T Consensus       256 -----~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (491)
T 4aps_A          256 -----VAIAIPVFYFAW----------------MISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER  313 (491)
T ss_dssp             -----HHHHHHHHHHHH----------------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS
T ss_pred             -----HHHHHHHHHHHH----------------Hhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence                 000000000000                0000 001123456666777888888999999988 5554433332 


Q ss_pred             cCCCCCCCceecCCccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011875          252 MDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA  331 (475)
Q Consensus       252 ~~~~~~~~~~ip~~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~  331 (475)
                      .+.+.     .+.+++..++.+..++..++..++..    |.++|+  +....++.+|+++.+++++..+.....     
T Consensus       314 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  377 (491)
T 4aps_A          314 VDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLWT----AWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-----  377 (491)
T ss_dssp             CCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHHH----HTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-----
T ss_pred             hccCc-----cCHHHHhccchHHHHHHHHHHHHHHH----HHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            22221     46788889999999999998888543    333222  567788999999999998877765431     


Q ss_pred             hhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhhhcc
Q 011875          332 INEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT  411 (475)
Q Consensus       332 ~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~  411 (475)
                        .+      ...+.+.+|+++.+++.++++.+..|...+++.+..|++.||.++|++.....+|..+++.+...+.+. 
T Consensus       378 --~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-  448 (491)
T 4aps_A          378 --YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-  448 (491)
T ss_dssp             --CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-
T ss_pred             --cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence              01      123468889999999999999999999999999999999999999999999999999999887766521 


Q ss_pred             cCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011875          412 KRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK  458 (475)
Q Consensus       412 ~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~~~  458 (475)
                                      .....|+.+++++++..+++++..++.+++.
T Consensus       449 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (491)
T 4aps_A          449 ----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM  479 (491)
T ss_dssp             ----------------STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1344677788888888877777777665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.23  E-value=2.1e-10  Score=117.42  Aligned_cols=313  Identities=9%  Similarity=-0.012  Sum_probs=174.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCC-ccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g-~~~~F~  110 (475)
                      +.+.++++..+.++|.|...+...++++|.+++       ++|.+.+.++..+.++|.++++.+.+++.+..| |++.|.
T Consensus       118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~  190 (451)
T 1pw4_A          118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  190 (451)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            456788888999999999999999999999864       258999999999999999999999998878888 999999


Q ss_pred             HHHHHHHHHHHHHHhcCccEeecCCCCCChhhHHHHHHHHHhhCCCCCCCcccchhhccCCCcccccCCccchhhhhhhh
Q 011875          111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM  190 (475)
Q Consensus       111 i~~v~~~~~~ivf~~~~~~~~~~~p~~spl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~  190 (475)
                      +.++..++..++.+...+.    .|+...               ..+.....  .....                +....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~----~~~~~~---------------~~~~~~~~--~~~~~----------------~~~~~  233 (451)
T 1pw4_A          191 MPAFCAILVALFAFAMMRD----TPQSCG---------------LPPIEEYK--NDYPD----------------DYNEK  233 (451)
T ss_dssp             HHHHHHHHHHHHHHHHCCC----SSTTTC---------------CCSCTTTC--CC------------------------
T ss_pred             HHHHHHHHHHHHHHhhccC----CHhhcC---------------CCChhhhc--ccccc----------------cchhh
Confidence            9887776665554333221    111100               00000000  00000                00000


Q ss_pred             ccCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCCCCCceecC---Ccc
Q 011875          191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKVIPIWSTGIMIAVTISQSSFLVLQASSMDRHVTPNFEIPS---GSF  267 (475)
Q Consensus       191 ~~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~~~f~~~~~Q~s~~~~q~~~~~~~~~~~~~ip~---~~~  267 (475)
                        .        .. ...++   +....+..+-..+..+.+...+++..+..  ...+....+....+    .++   +++
T Consensus       234 --~--------~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g----~~~~~~~~~  293 (451)
T 1pw4_A          234 --A--------EQ-ELTAK---QIFMQYVLPNKLLWYIAIANVFVYLLRYG--ILDWSPTYLKEVKH----FALDKSSWA  293 (451)
T ss_dssp             ----------------CCT---HHHHHHTSSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHBTTBSC----CCHHHHHHH
T ss_pred             --h--------hc-ccccc---cchHHHHHcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcC----CCHHHHHHH
Confidence              0        00 00000   00000100001112222222222222211  11111222222221    122   234


Q ss_pred             chhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCccccccc
Q 011875          268 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFST-ASMTAWAIVEAARRSIAINEGISDDLRAVVQM  346 (475)
Q Consensus       268 ~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~-ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v  346 (475)
                      .+...+..++..++..++    .+|..+     ...+.+.++.++.+ ++++.....                    ...
T Consensus       294 ~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~  344 (451)
T 1pw4_A          294 YFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFFMTLVTIATIVYWMN--------------------PAG  344 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC--------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh--------------------ccc
Confidence            444444444444544443    233200     11222334444333 333322111                    013


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHH-HHHHHHHHHHhhhhcccCCCCCCCCCCCCc
Q 011875          347 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA-ANLVASLIMNAVDDITKRGGNGGWIPSNIN  425 (475)
Q Consensus       347 s~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~i-g~~l~~~l~~~~~~~~~~~~~~~w~~~~ln  425 (475)
                      +.++.+...++.+++-....+....++.+..|++.+|.++|++.....+ |..+++.+...+.+..      +       
T Consensus       345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g-------  411 (451)
T 1pw4_A          345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G-------  411 (451)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C-------
T ss_pred             CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C-------
Confidence            5566667778888888888888889999999999999999999999998 9999998887655321      1       


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011875          426 KGHYDYYYWLLTALSMANFLYYLACCKA  453 (475)
Q Consensus       426 ~~~~~~~f~~la~l~~~~~~~~~~~~~~  453 (475)
                         ....|++.++++++..++++...++
T Consensus       412 ---~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          412 ---WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               3456677777777777766665444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.79  E-value=7.5e-07  Score=90.54  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=72.3

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhee-ccCC-----
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG-----  104 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~-~~~g-----  104 (475)
                      .+.+.++++..+.++|.|...+...++++|.++++       +|...++++..+.++|..+++.+.+++. +..+     
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  187 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES-------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD  187 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST-------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            34678889999999999999999999999999653       4788899999999999999999999887 5555     


Q ss_pred             --------------------ccchhHHHHHHHHHHHHHHHh
Q 011875          105 --------------------WKVGFGVPAVIMLLSALSFFL  125 (475)
Q Consensus       105 --------------------~~~~F~i~~v~~~~~~ivf~~  125 (475)
                                          |++.|.+.++..++..++++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                899997766665555554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.57  E-value=2.6e-08  Score=99.52  Aligned_cols=83  Identities=13%  Similarity=0.106  Sum_probs=71.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheeccCCccchhHH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i  111 (475)
                      +.+.++++..+.++|.|...+...+++.|.++++       +|.+.+.++..+.++|..+++.+.+++.+..||+..|.+
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  159 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT-------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence            4566777888899999999999999999998653       378889999999999999999999999988899999998


Q ss_pred             HHHHHHHHHH
Q 011875          112 PAVIMLLSAL  121 (475)
Q Consensus       112 ~~v~~~~~~i  121 (475)
                      .++..++..+
T Consensus       160 ~~~~~~~~~~  169 (375)
T 2gfp_A          160 LLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            7776666554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.43  E-value=1.4e-05  Score=82.42  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=61.0

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc--------
Q 011875           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------  102 (475)
Q Consensus        31 ~~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~--------  102 (475)
                      ...+.++++-.+.++|.|+.-+....+++|..++       ++|.....++..++++|.+++..+...+...        
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  196 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT  196 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence            4577899999999999999999999999998754       3588888999999999999998776655432        


Q ss_pred             CCccchhHHHHHHHH
Q 011875          103 LGWKVGFGVPAVIML  117 (475)
Q Consensus       103 ~g~~~~F~i~~v~~~  117 (475)
                      .+|++.+.+..+..+
T Consensus       197 ~~~~~~~~~~~~~~~  211 (491)
T 4gc0_A          197 DGWRYMFASECIPAL  211 (491)
T ss_dssp             THHHHHHHTTHHHHH
T ss_pred             hhhHHHhhhhhhhhh
Confidence            235555554444333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.10  E-value=7.8e-05  Score=75.65  Aligned_cols=114  Identities=11%  Similarity=-0.009  Sum_probs=84.3

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +++.+...+...+..|+..++    .+|.+       ..+-+.+|.++.+++.+..++....                  
T Consensus        65 g~~~~~~~~~~~~~~~~~G~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~~------------------  115 (451)
T 1pw4_A           65 GFALSGISIAYGFSKFIMGSV----SDRSN-------PRVFLPAGLILAAAVMLFMGFVPWA------------------  115 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHSC-------HHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred             HHHHHHHHHHHHHHHHhHHHH----HHhcC-------chHHHHHHHHHHHHHHHHHHhhhhc------------------
Confidence            345555555556666666554    34432       2234667888888877766652210                  


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      ..+.++++...++.|++.....|....++.+..|++.|+..+|++....++|..+++.+....
T Consensus       116 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            034567778899999999999999999999999999999999999999999999999888664

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.94  E-value=3.1e-06  Score=86.19  Aligned_cols=86  Identities=12%  Similarity=0.096  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHH-HhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcC
Q 011875          348 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK  426 (475)
Q Consensus       348 ~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~-~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~  426 (475)
                      .++++...++.+++.....+....++.+..|++.||..+|+ +....++|+.+++.+...+.+..               
T Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---------------  376 (417)
T 2cfq_A          312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------------  376 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------------
Confidence            44555555667777666667778899999999999999998 57777888888888877544210               


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHH
Q 011875          427 GHYDYYYWLLTALSMANFLYYLA  449 (475)
Q Consensus       427 ~~~~~~f~~la~l~~~~~~~~~~  449 (475)
                       .....|.+.++++++..++.+.
T Consensus       377 -g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          377 -GFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHh
Confidence             1334566677777766665543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.87  E-value=0.00012  Score=75.59  Aligned_cols=143  Identities=13%  Similarity=0.058  Sum_probs=98.6

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhh-ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASK-IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV  343 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~-~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~  343 (475)
                      +++.+...+...+..|+..++.    +| .++       .+-+.+|.++.+++.+..++.                    
T Consensus        57 ~~~~~~~~~~~~~~~~~~g~l~----dr~~g~-------r~~~~~~~~~~~~~~~~~~~~--------------------  105 (491)
T 4aps_A           57 ASIMAIYASMVYLSGTIGGFVA----DRIIGA-------RPAVFWGGVLIMLGHIVLALP--------------------  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHTSCH-------HHHHHHHHHHHHHHHHHHHSC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----hccccc-------hHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            3555666666666667666643    33 221       233566777776666544321                    


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchh--hhHHHHHHhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC
Q 011875          344 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM--SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP  421 (475)
Q Consensus       344 ~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~--kg~~~g~~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~  421 (475)
                        .+.++++...++.|+++....|....++.+..|++.  |+..++++.....+|..+++.+...+....      +|  
T Consensus       106 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~--  175 (491)
T 4aps_A          106 --FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY--  175 (491)
T ss_dssp             --CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH--
T ss_pred             --hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH--
Confidence              345667788899999999999999999999999988  888888899999999999998887765321      23  


Q ss_pred             CCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011875          422 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP  456 (475)
Q Consensus       422 ~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y~~  456 (475)
                              ...|++.+++.++..++++...+++.+
T Consensus       176 --------~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          176 --------HVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence                    345556666666666666666555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.81  E-value=0.00033  Score=70.75  Aligned_cols=114  Identities=14%  Similarity=0.019  Sum_probs=85.7

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +++.+...+..++..|+..++    .+|.       ...+-+.+|.++.+++.+..+....                   
T Consensus        64 g~~~~~~~~~~~i~~~~~G~l----~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~-------------------  113 (438)
T 3o7q_A           64 GLIQSAFYFGYFIIPIPAGIL----MKKL-------SYKAGIITGLFLYALGAALFWPAAE-------------------  113 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHHHHHHhHHHH----HHHh-------cchHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence            344555555555666666554    3443       2234467788888877776643211                   


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      ..+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus       114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1457778888999999999999999999999999999999999999999999999999887654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.46  E-value=0.00099  Score=69.21  Aligned_cols=114  Identities=17%  Similarity=0.027  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhh
Q 011875          304 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS  383 (475)
Q Consensus       304 ~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg  383 (475)
                      +-+.+|.++.+++.+..++.                     +.+.++++...++.|+++....|....++.+..|++.|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~  144 (524)
T 2xut_A           86 NTILWLSLIYCVGHAFLAIF---------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS  144 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT---------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHh---------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH
Confidence            34566777777766554432                     125677778889999999999999999999999999998


Q ss_pred             HHHHH---HhHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011875          384 IASTL---SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY  454 (475)
Q Consensus       384 ~~~g~---~~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~~~~~~~~~~y  454 (475)
                      ..+++   +....++|..+++.+...+....      +          ....|++.+++.++..++++...+++
T Consensus       145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g----------~~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNF------G----------AAVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------C----------HHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c----------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            77766   88888889888887776554210      2          23456666666665555554433333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.38  E-value=0.0026  Score=62.81  Aligned_cols=110  Identities=14%  Similarity=0.101  Sum_probs=82.6

Q ss_pred             ccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc
Q 011875          266 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  345 (475)
Q Consensus       266 ~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (475)
                      ++.+...+...+..|+..++    .+|.++|       +-+.+|.++.+++.+..+..                      
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------   85 (375)
T 2gfp_A           39 SVMGAYLLTYGVSQLFYGPI----SDRVGRR-------PVILVGMSIFMLATLVAVTT----------------------   85 (375)
T ss_dssp             HHHHHHHHHHHHHHTTHHHH----HTTSCCC-------CCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence            44555555556666665554    3444333       12456777777777665543                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      .+.++++...++.+++.....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus        86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A           86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            245667788899999999999999999999999999999999999999999999998887654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=95.36  E-value=0.32  Score=49.38  Aligned_cols=63  Identities=6%  Similarity=0.069  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhhh
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  408 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~~  408 (475)
                      -+.+.++..-++.|+|+-...+.+..++.+.+|++.|+..++++.....+|..++..+.....
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            467778888999999999999999999999999999999999999999999999887776544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=93.24  E-value=0.03  Score=56.38  Aligned_cols=84  Identities=10%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHH-HHHHHHHHHHHHhhhhhheeccCCccchhHHHH
Q 011875           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (475)
Q Consensus        35 ~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~-fY~~iNiG~~ia~~~~~~l~~~~g~~~~F~i~~  113 (475)
                      .+.+...+.+++.+.+-+...++..|.+++       +.|..++.+ +..+.++|+.++|.+.+++.+..||...|.+.+
T Consensus       314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          314 EVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            344444455666666666667788888754       346677777 467778999999999999988889999999988


Q ss_pred             HHHHHHHHHHHh
Q 011875          114 VIMLLSALSFFL  125 (475)
Q Consensus       114 v~~~~~~ivf~~  125 (475)
                      +..+++.++.+.
T Consensus       387 ~~~l~~~~~~~~  398 (417)
T 2cfq_A          387 LVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            888887776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	475
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.1
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.42
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.3
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.14

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.1e-09  Score=106.85  Aligned_cols=87  Identities=11%  Similarity=0.020  Sum_probs=70.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~  110 (475)
                      ..+.++++..+.++|.|..-+...++++|.++++       +|...++++..+.++|..+++.+.+.+... .+|+..|.
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~  187 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK-------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  187 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT-------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh-------cccccccccccccchhhhhhhhhhhhHhhhhhcccccch
Confidence            4566778888899999999999999999988653       588999999999999999999887765544 58999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011875          111 VPAVIMLLSALSFFL  125 (475)
Q Consensus       111 i~~v~~~~~~ivf~~  125 (475)
                      +.++..++..++.+.
T Consensus       188 ~~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         188 MPAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHH
Confidence            887766665555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=1.5e-06  Score=83.45  Aligned_cols=94  Identities=14%  Similarity=0.140  Sum_probs=71.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHH-hHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011875          346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  424 (475)
Q Consensus       346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~-~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l  424 (475)
                      .+.++++...++.+++..+..+....++.+..|++.|+..+|+. .+..++|..+++.+.+...+..      +      
T Consensus       310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~------g------  377 (417)
T d1pv7a_         310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI------G------  377 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH------C------
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------C------
Confidence            45677778889999999999999999999999999999999975 4667788888888776654221      1      


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011875          425 NKGHYDYYYWLLTALSMANFLYYLACCKAYG  455 (475)
Q Consensus       425 n~~~~~~~f~~la~l~~~~~~~~~~~~~~y~  455 (475)
                          ....|++.++++++..++.++..|+-+
T Consensus       378 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         378 ----FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence                344567778887777776666655443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=9.8e-06  Score=79.43  Aligned_cols=114  Identities=11%  Similarity=-0.009  Sum_probs=85.8

Q ss_pred             CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875          265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  344 (475)
Q Consensus       265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (475)
                      +++.+...+...+..|+..++    .+|.       ...+-+.+|+++.+++.+..+++...                  
T Consensus        62 g~~~s~~~~~~~~~~~~~G~l----~Dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~------------------  112 (447)
T d1pw4a_          62 GFALSGISIAYGFSKFIMGSV----SDRS-------NPRVFLPAGLILAAAVMLFMGFVPWA------------------  112 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHc-------CchHHHHHHHHHHHHHHhhccccchh------------------
Confidence            355566666666666666654    3443       22244667888888887776654321                  


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875          345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  407 (475)
Q Consensus       345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~  407 (475)
                      ..+.++++...++.++++....+.....+.+..|++.|+..+|++....++|..+++.+....
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            145667788889999999999999999999999999999999999999999999988776654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0024  Score=60.05  Aligned_cols=88  Identities=9%  Similarity=0.088  Sum_probs=72.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhheeccCCccchhH
Q 011875           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (475)
Q Consensus        32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY-~~iNiG~~ia~~~~~~l~~~~g~~~~F~  110 (475)
                      +.+.+++...+.+++.|...+...++..|.++++       .|.+.+.+.+ .+.++|..+++.+.+++.++.||+..|.
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~  383 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR-------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL  383 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG-------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence            4566777888899999999999999999998653       4778888866 4567999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 011875          111 VPAVIMLLSALSFFLA  126 (475)
Q Consensus       111 i~~v~~~~~~ivf~~~  126 (475)
                      +.++..++..++.++.
T Consensus       384 ~~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         384 VLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888777777665543