Citrus Sinensis ID: 011904

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
cccccEEHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEccccccccccccccccEEEEcccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccEEEEEEEccHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccccEEHHHHHHHHHHHHEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccEEccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHEEEEEEEEEcccccEEEEEEEEEccccccccccEEEEEcccccccccEEEEEcccEEEcHHHHHHHHHHccccccccEEEEEEEEEEcccc
ccHHHHHHHHHHHHHHHHHHcccHccccccEcccccccccccccccEEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEccccccccccccccccccEEEEEEEEEHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEcccccccccccEEEEEccccccccccEEEccccEEcccEEEEEEEHHcHHcccccEEEEEEEEEEEccc
MDFKRLSWVLFPVAVVSLVCypasvtagdivhdddlapkkpgcendfVLVKVQTWidgieneefvgvgarfgttivskeknanqihltlshprdccsmpkhkyagdvimvdrgnckfttKANIAEAAGASALLIINNQKELYkmvcdpdetdldihipavmmpqdagASLEKMLLNTSSVsvqlysprrpvvDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVdeipdakavgVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAgesfikvpffgavshltlAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIvhipnlkvGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARgdksgedgipmllkiprmfdpwggysiigfgdillPGLIIAFSLRFklsdlsshhipisalysqafts
mdfkrlswVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTlshprdccsmpKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVArgdksgedgiPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSshhipisalysqafts
MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
****RLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALY******
***KRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL**********DLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAV**************VDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFT*
MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQE******************SGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
iiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query475 2.2.26 [Sep-21-2011]
Q8W469540 Signal peptide peptidase- yes no 0.903 0.794 0.816 0.0
Q5Z413542 Signal peptide peptidase- yes no 0.894 0.784 0.724 0.0
Q0DWA9545 Signal peptide peptidase- no no 0.892 0.777 0.748 0.0
Q0WMJ8540 Signal peptide peptidase- no no 0.924 0.812 0.703 0.0
Q53P98534 Signal peptide peptidase- no no 0.873 0.777 0.502 1e-125
Q4V3B8540 Signal peptide peptidase- no no 0.898 0.790 0.459 1e-110
Q9MA44536 Signal peptide peptidase- no no 0.884 0.783 0.453 1e-103
Q5N808523 Signal peptide peptidase- no no 0.886 0.804 0.406 9e-94
Q8TCT7 592 Signal peptide peptidase- yes no 0.717 0.576 0.318 4e-41
Q5PQL3 577 Signal peptide peptidase- yes no 0.732 0.603 0.298 6e-41
>sp|Q8W469|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1 Back     alignment and function desciption
 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/430 (81%), Positives = 396/430 (92%), Gaps = 1/430 (0%)

Query: 24  SVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNAN 83
           +VTAGDIVH D+LAPKKPGCENDFVLVKVQTWIDG+ENEEFVGVGARFG  IVSKEKNAN
Sbjct: 24  TVTAGDIVHQDNLAPKKPGCENDFVLVKVQTWIDGVENEEFVGVGARFGKRIVSKEKNAN 83

Query: 84  QIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYK 143
           Q HL  ++PRD C+  K+K +GDV++V+RGNC+FT KAN AEAAGASALLIINNQKELYK
Sbjct: 84  QTHLVFANPRDSCTPLKNKLSGDVVIVERGNCRFTAKANNAEAAGASALLIINNQKELYK 143

Query: 144 MVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMA 203
           MVC+PDETDLDI IPAVM+PQDAGASL+KML N+S VS QLYSPRRP VDVAEVFLWLMA
Sbjct: 144 MVCEPDETDLDIQIPAVMLPQDAGASLQKMLANSSKVSAQLYSPRRPAVDVAEVFLWLMA 203

Query: 204 VGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVAS 263
           +GTILCASYWSAWSARE AIE +KLLKDA+DEIP+    G SGVV+IN+ SA+ FV++AS
Sbjct: 204 IGTILCASYWSAWSAREAAIEHDKLLKDAIDEIPNTND-GGSGVVEINSISAIFFVVLAS 262

Query: 264 CFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSH 323
            FLV+LYKLMS WF+ELLV++FCIGGVEGLQTCLVALLSRWF+RA ++++KVPF G +S+
Sbjct: 263 GFLVILYKLMSYWFVELLVVVFCIGGVEGLQTCLVALLSRWFQRAADTYVKVPFLGPISY 322

Query: 324 LTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAF 383
           LTLAV+PFCI FAV+WA+YR  SFAWIGQD+LGIALIITVLQIVH+PNLKVGTVLLSCAF
Sbjct: 323 LTLAVSPFCIVFAVLWAVYRVHSFAWIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAF 382

Query: 384 MYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP 443
           +YDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP
Sbjct: 383 LYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP 442

Query: 444 GLIIAFSLRF 453
           GL+IAF+LR+
Sbjct: 443 GLLIAFALRY 452
Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q5Z413|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q0DWA9|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1 Back     alignment and function description
>sp|Q0WMJ8|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1 Back     alignment and function description
>sp|Q53P98|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1 Back     alignment and function description
>sp|Q4V3B8|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9MA44|SIPL5_ARATH Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q5N808|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8TCT7|SPP2B_HUMAN Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2 Back     alignment and function description
>sp|Q5PQL3|SPP2B_RAT Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
224071926541 predicted protein [Populus trichocarpa] 0.953 0.837 0.865 0.0
255537495542 Minor histocompatibility antigen H13, pu 0.943 0.826 0.847 0.0
359474199548 PREDICTED: signal peptide peptidase-like 0.953 0.826 0.845 0.0
224058471541 predicted protein [Populus trichocarpa] 0.96 0.842 0.833 0.0
16118856537 growth-on protein GRO10 [Euphorbia esula 0.913 0.808 0.857 0.0
449452304545 PREDICTED: signal peptide peptidase-like 0.953 0.831 0.810 0.0
12324949519 unknown protein; 50290-46846 [Arabidopsi 0.903 0.826 0.816 0.0
18407872540 signal peptide peptidase-like 2 [Arabido 0.903 0.794 0.816 0.0
42571983540 signal peptide peptidase-like 2 [Arabido 0.903 0.794 0.813 0.0
297840125540 protease-associated domain-containing pr 0.903 0.794 0.813 0.0
>gi|224071926|ref|XP_002303595.1| predicted protein [Populus trichocarpa] gi|222841027|gb|EEE78574.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/453 (86%), Positives = 426/453 (94%)

Query: 1   MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIE 60
           MD ++L  V+   AV+SLVCYP+SVTAGDIVHDD+LAPKKPGCENDFVLVKVQTW+DG+E
Sbjct: 1   MDLQKLCLVITVTAVISLVCYPSSVTAGDIVHDDNLAPKKPGCENDFVLVKVQTWVDGVE 60

Query: 61  NEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTK 120
           + EFVGVGARFGTTIVSKEKNANQI LTLS P DCCS PKHK  GDVIMV RG+CKFTTK
Sbjct: 61  DAEFVGVGARFGTTIVSKEKNANQIRLTLSDPLDCCSAPKHKLDGDVIMVHRGHCKFTTK 120

Query: 121 ANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSV 180
           AN AEAAGASALLIINNQKELYKMVC+PDETDLDIHIPAVM+PQDAG+SLEKMLL  SSV
Sbjct: 121 ANNAEAAGASALLIINNQKELYKMVCEPDETDLDIHIPAVMLPQDAGSSLEKMLLTNSSV 180

Query: 181 SVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAK 240
           SVQLYSPRRP+VD+AEVFLWLMAVGTILCASYWSAWSARE AIEQ+KLLKDAVDEIP+ K
Sbjct: 181 SVQLYSPRRPLVDIAEVFLWLMAVGTILCASYWSAWSAREAAIEQDKLLKDAVDEIPNEK 240

Query: 241 AVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVAL 300
           AVG S VVDINT SAVLFV++ASCFLV+LYKLMS WF+ELLV+LFCIGGVEGLQTCLVAL
Sbjct: 241 AVGFSTVVDINTTSAVLFVVIASCFLVILYKLMSYWFIELLVVLFCIGGVEGLQTCLVAL 300

Query: 301 LSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALI 360
           LSRWF+ AGES+IKVPFFG +S+LTLAV PFCIAFAVVWA+YR VSFAWIGQDILGIALI
Sbjct: 301 LSRWFKHAGESYIKVPFFGPLSYLTLAVAPFCIAFAVVWAVYRTVSFAWIGQDILGIALI 360

Query: 361 ITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLL 420
           ITVLQIVH+PNLKVGTVLLSCAF+YDIFWVFVSKK+FHESVMIVVARGD+SGEDGIPMLL
Sbjct: 361 ITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKVFHESVMIVVARGDRSGEDGIPMLL 420

Query: 421 KIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRF 453
           KIPR+FDPWGGYSIIGFGDILLPGL+IAFSLR+
Sbjct: 421 KIPRLFDPWGGYSIIGFGDILLPGLLIAFSLRY 453

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537495|ref|XP_002509814.1| Minor histocompatibility antigen H13, putative [Ricinus communis] gi|223549713|gb|EEF51201.1| Minor histocompatibility antigen H13, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359474199|ref|XP_002274996.2| PREDICTED: signal peptide peptidase-like 2B-like [Vitis vinifera] gi|297742511|emb|CBI34660.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224058471|ref|XP_002299526.1| predicted protein [Populus trichocarpa] gi|222846784|gb|EEE84331.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|16118856|gb|AAL14629.1|AF417576_1 growth-on protein GRO10 [Euphorbia esula] Back     alignment and taxonomy information
>gi|449452304|ref|XP_004143899.1| PREDICTED: signal peptide peptidase-like 2-like [Cucumis sativus] gi|449495775|ref|XP_004159941.1| PREDICTED: signal peptide peptidase-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|12324949|gb|AAG52428.1|AC011622_16 unknown protein; 50290-46846 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18407872|ref|NP_564815.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] gi|75248730|sp|Q8W469.1|SIPL2_ARATH RecName: Full=Signal peptide peptidase-like 2; Short=AtSPPL2; Flags: Precursor gi|17065462|gb|AAL32885.1| Unknown protein [Arabidopsis thaliana] gi|31711956|gb|AAP68334.1| At1g63690 [Arabidopsis thaliana] gi|332196013|gb|AEE34134.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42571983|ref|NP_974082.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] gi|332196012|gb|AEE34133.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297840125|ref|XP_002887944.1| protease-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333785|gb|EFH64203.1| protease-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
TAIR|locus:2026684540 SPPL2 "SIGNAL PEPTIDE PEPTIDAS 0.951 0.837 0.783 1.7e-194
TAIR|locus:2198155540 SPPL4 "SIGNAL PEPTIDE PEPTIDAS 0.943 0.829 0.693 3.2e-168
TAIR|locus:2040971540 SPPL3 "SIGNAL PEPTIDE PEPTIDAS 0.932 0.820 0.452 8.6e-104
TAIR|locus:2198733536 SPPL5 "SIGNAL PEPTIDE PEPTIDAS 0.884 0.783 0.453 1.3e-100
UNIPROTKB|Q8TCT7 592 SPPL2B "Signal peptide peptida 0.728 0.584 0.313 1e-43
UNIPROTKB|F1S8G9 585 LOC100515648 "Uncharacterized 0.749 0.608 0.307 1.7e-43
UNIPROTKB|F1Q1B4 580 SPPL2B "Uncharacterized protei 0.732 0.6 0.310 4.5e-43
UNIPROTKB|J9P0Q5 650 SPPL2B "Uncharacterized protei 0.732 0.535 0.310 4.5e-43
RGD|1308556 577 Sppl2b "signal peptide peptida 0.732 0.603 0.300 2.5e-42
UNIPROTKB|Q5PQL3 577 Sppl2b "Signal peptide peptida 0.732 0.603 0.300 2.5e-42
TAIR|locus:2026684 SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1884 (668.3 bits), Expect = 1.7e-194, P = 1.7e-194
 Identities = 355/453 (78%), Positives = 405/453 (89%)

Query:     1 MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIE 60
             MD  R   +L   + + L+   ++VTAGDIVH D+LAPKKPGCENDFVLVKVQTWIDG+E
Sbjct:     1 MDSLRFLRILLLSSSILLLSLRSTVTAGDIVHQDNLAPKKPGCENDFVLVKVQTWIDGVE 60

Query:    61 NEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTK 120
             NEEFVGVGARFG  IVSKEKNANQ HL  ++PRD C+  K+K +GDV++V+RGNC+FT K
Sbjct:    61 NEEFVGVGARFGKRIVSKEKNANQTHLVFANPRDSCTPLKNKLSGDVVIVERGNCRFTAK 120

Query:   121 ANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSV 180
             AN AEAAGASALLIINNQKELYKMVC+PDETDLDI IPAVM+PQDAGASL+KML N+S V
Sbjct:   121 ANNAEAAGASALLIINNQKELYKMVCEPDETDLDIQIPAVMLPQDAGASLQKMLANSSKV 180

Query:   181 SVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAK 240
             S QLYSPRRP VDVAEVFLWLMA+GTILCASYWSAWSARE AIE +KLLKDA+DEIP+  
Sbjct:   181 SAQLYSPRRPAVDVAEVFLWLMAIGTILCASYWSAWSAREAAIEHDKLLKDAIDEIPNTN 240

Query:   241 AVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVAL 300
               G SGVV+IN+ SA+ FV++AS FLV+LYKLMS WF+ELLV++FCIGGVEGLQTCLVAL
Sbjct:   241 DGG-SGVVEINSISAIFFVVLASGFLVILYKLMSYWFVELLVVVFCIGGVEGLQTCLVAL 299

Query:   301 LSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALI 360
             LSRWF+RA ++++KVPF G +S+LTLAV+PFCI FAV+WA+YR  SFAWIGQD+LGIALI
Sbjct:   300 LSRWFQRAADTYVKVPFLGPISYLTLAVSPFCIVFAVLWAVYRVHSFAWIGQDVLGIALI 359

Query:   361 ITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLL 420
             ITVLQIVH+PNLKVGTVLLSCAF+YDIFWVFVSKKLFHESVMIVV RGDKSGEDGIPMLL
Sbjct:   360 ITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHESVMIVVTRGDKSGEDGIPMLL 419

Query:   421 KIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRF 453
             KIPRMFDPWGGYSIIGFGDILLPGL+IAF+LR+
Sbjct:   420 KIPRMFDPWGGYSIIGFGDILLPGLLIAFALRY 452
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006508 "proteolysis" evidence=ISS
GO:0008233 "peptidase activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0005768 "endosome" evidence=IDA
TAIR|locus:2198155 SPPL4 "SIGNAL PEPTIDE PEPTIDASE-LIKE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TCT7 SPPL2B "Signal peptide peptidase-like 2B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8G9 LOC100515648 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1B4 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0Q5 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1308556 Sppl2b "signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5PQL3 Sppl2b "Signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5Z413SIPL5_ORYSJ3, ., 4, ., 2, 3, ., -0.72470.89470.7841yesno
Q8W469SIPL2_ARATH3, ., 4, ., 2, 3, ., -0.81620.90310.7944yesno
Q0WMJ8SIPL4_ARATH3, ., 4, ., 2, 3, ., -0.70360.92420.8129nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_III1147
hypothetical protein (541 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
pfam04258291 pfam04258, Peptidase_A22B, Signal peptide peptidas 3e-74
cd02132139 cd02132, PA_GO-like, PA_GO-like: Protease-associat 4e-68
smart00730249 smart00730, PSN, Presenilin, signal peptide peptid 1e-49
cd00538126 cd00538, PA, PA: Protease-associated (PA) domain 2e-13
cd04818118 cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas 1e-12
cd02127118 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease- 2e-12
pfam0222596 pfam02225, PA, PA domain 1e-11
cd02125127 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) 1e-09
cd02123153 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a 8e-08
cd04816122 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- 9e-07
cd02126126 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as 2e-06
cd02129120 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as 6e-06
cd04813117 cd04813, PA_1, PA_1: Protease-associated (PA) doma 2e-05
cd02133143 cd02133, PA_C5a_like, PA_C5a_like: Protease-associ 2e-05
cd02130122 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as 4e-05
cd02122138 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a 1e-04
>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase Back     alignment and domain information 
 Score =  234 bits (600), Expect = 3e-74
 Identities = 93/232 (40%), Positives = 123/232 (53%), Gaps = 17/232 (7%)

Query: 247 VVDINTASAVLFVLVASCFLVMLYKLMSNWFLE------LLVILFCIGGVEGLQ-TCLVA 299
              I++  A++F + ASC L+ LY    +   E      +L   FCI G   L    L  
Sbjct: 6   TGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAFLILPP 65

Query: 300 LLSRWFRRAGESFIKVP-----FFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDI 354
            + R        F K         G  ++  L     CI FAV W + RK    WI QDI
Sbjct: 66  CIRRLSFMGAYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRKEH--WILQDI 123

Query: 355 LGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGED 414
           LGIAL I V++I+ +PNLKVGT+LLS  F YDIFWVF+S  +F  SVM+ VA G     +
Sbjct: 124 LGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPFDAAE 183

Query: 415 GIPMLLKIPRMFD---PWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHI 463
            +PM L  PR+ D    WG +S++G GDI++PGL+IAF LRF +S   S   
Sbjct: 184 KLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDISKNKSSRT 235

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291
>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family Back     alignment and domain information
>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain Back     alignment and domain information
>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>gnl|CDD|216938 pfam02225, PA, PA domain Back     alignment and domain information
>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information
>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>gnl|CDD|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>gnl|CDD|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 475
KOG2442541 consensus Uncharacterized conserved protein, conta 100.0
KOG2443362 consensus Uncharacterized conserved protein [Funct 100.0
PF04258298 Peptidase_A22B: Signal peptide peptidase; InterPro 100.0
smart00730249 PSN Presenilin, signal peptide peptidase, family. 100.0
cd02132139 PA_GO-like PA_GO-like: Protease-associated domain 99.97
cd02129120 PA_hSPPL_like PA_hSPPL_like: Protease-associated d 99.91
cd02126126 PA_EDEM3_like PA_EDEM3_like: protease associated d 99.89
cd02127118 PA_hPAP21_like PA_hPAP21_like: Protease-associated 99.87
cd02123153 PA_C_RZF_like PA_C-RZF_ like: Protease-associated 99.86
cd02122138 PA_GRAIL_like PA _GRAIL_like: Protease-associated 99.85
cd02125127 PA_VSR PA_VSR: Protease-associated (PA) domain-con 99.85
cd04818118 PA_subtilisin_1 PA_subtilisin_1: Protease-associat 99.82
cd04813117 PA_1 PA_1: Protease-associated (PA) domain subgrou 99.81
cd04816122 PA_SaNapH_like PA_SaNapH_like: Protease-associated 99.77
cd02130122 PA_ScAPY_like PA_ScAPY_like: Protease-associated d 99.74
KOG3920193 consensus Uncharacterized conserved protein, conta 99.73
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 99.69
cd02124129 PA_PoS1_like PA_PoS1_like: Protease-associated (PA 99.69
cd04817139 PA_VapT_like PA_VapT_like: Protease-associated dom 99.67
PF02225101 PA: PA domain; InterPro: IPR003137 The PA (Proteas 99.52
cd00538126 PA PA: Protease-associated (PA) domain. The PA dom 99.51
cd02133143 PA_C5a_like PA_C5a_like: Protease-associated domai 99.39
cd04819127 PA_2 PA_2: Protease-associated (PA) domain subgrou 99.36
cd04815134 PA_M28_2 PA_M28_2: Protease-associated (PA) domain 99.29
cd02120126 PA_subtilisin_like PA_subtilisin_like: Protease-as 99.16
PF06550283 DUF1119: Protein of unknown function (DUF1119); In 99.04
cd02128183 PA_TfR PA_TfR: Protease-associated domain containi 98.83
COG3389277 Uncharacterized protein conserved in archaea [Func 98.68
cd04822151 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do 98.3
cd02121220 PA_GCPII_like PA_GCPII_like: Protease-associated d 98.27
cd04814142 PA_M28_1 PA_M28_1: Protease-associated (PA) domain 98.25
cd04820137 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do 98.21
cd02131153 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso 97.94
cd04821157 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do 95.12
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1e-112  Score=872.46  Aligned_cols=448  Identities=51%  Similarity=0.850  Sum_probs=423.0

Q ss_pred             HHhhccccccCCcceecCCCCCCCCCCCCCeEEEEEeeeecCCcceeEEecccccCCcccccccCcceEEEEecCCCCCC
Q 011904           17 SLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCC   96 (475)
Q Consensus        17 ~~~~~~~~~~~~~~~~~d~~~~~~p~c~~~~~lv~~~~~~~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC   96 (475)
                      +++-......++|+.|+++..|+.|||+|+||++|+++|+||+|..++.+..|+||..++...+++...+++.++|.|.|
T Consensus         8 ~l~g~~~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~c   87 (541)
T KOG2442|consen    8 LLLGLGSFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSC   87 (541)
T ss_pred             hhhhhhheEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCcccc
Confidence            33333566788999999999999999999999999999999999999999999999999988887788888899999999


Q ss_pred             CCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCcceeEEEeccchhhhHHHHhhc
Q 011904           97 SMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLN  176 (475)
Q Consensus        97 ~~~~~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~  176 (475)
                      +++.+.++|+++++.||+|+|++|+++||++||.|++|+|+.+|+..|+|.+.++..+++||++||++++|+++.+....
T Consensus        88 s~~~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~  167 (541)
T KOG2442|consen   88 STLQSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS  167 (541)
T ss_pred             CCCCccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             cceEEEEEecCCCCccchhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhccccCCCCcccccCCCCeeeeCccchh
Q 011904          177 TSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAV  256 (475)
Q Consensus       177 g~~V~V~l~~p~~p~~D~s~~~L~l~Av~tV~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~a~  256 (475)
                      +++|++++|+|++|.+|++++++|+|||+||++|+|||++++||+..|+++.++|..+++.+++|++|++..++|+..|+
T Consensus       168 ~~~V~~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~  247 (541)
T KOG2442|consen  168 NDNVELALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAV  247 (541)
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEE
Confidence            99999999999999999999999999999999999999999999998999888877777777888889999999999999


Q ss_pred             hHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceeeeccccccccchhhhhhhhhhhh
Q 011904          257 LFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFA  336 (475)
Q Consensus       257 ~fpv~as~~Ll~Ly~~~~~~~~~ll~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~  336 (475)
                      .|++++|.+|++||||+++ ++++++++|||+|..++++|+.+++.|++.+..+.....|..|+.++..+++.++|++++
T Consensus       248 ~fvv~~c~~LvLlyfF~~~-~V~v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~a  326 (541)
T KOG2442|consen  248 FFVVTACGFLVLLYFFYSY-LVYVLIIIFCIGGAQGLYNCLAALVHRLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVA  326 (541)
T ss_pred             EehhhhHHHHHHHHHHHHH-HHHHHhhheeecccchHHHHHHHHHhhhhhhcccccccccccCChhHHHHHHHHhhhhee
Confidence            9999999999999999974 999999999999999999999999999876655555667788899999999999999999


Q ss_pred             eeeeeeeccccchhHhhHHHHHHHHHHHHhcccCchhHHHHHHHHHHhhheeeeeeeccccc--ceeEEEeecCCCCCCC
Q 011904          337 VVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARGDKSGED  414 (475)
Q Consensus       337 ~~w~~~~~~~~~Wil~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~YDIFwVF~sp~~f~--~sVMv~VA~g~~~~~~  414 (475)
                      ++|+++||++|+|++||++|||+|+++++.+||||+|+|++||.++|+|||||||+||++||  ||||++||+|.++++|
T Consensus       327 V~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~E  406 (541)
T KOG2442|consen  327 VVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEE  406 (541)
T ss_pred             EEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998  9999999999999999


Q ss_pred             CCCEEEEecccc-----CCCCceeeecccchhhHHHHHHHHHHhhcccCCCCccch
Q 011904          415 GIPMLLKIPRMF-----DPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPI  465 (475)
Q Consensus       415 ~~P~~l~~P~~~-----~~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~~~~~~  465 (475)
                      ++||+|++||++     ++|++|||||||||++||++||||+|||...++.|++|+
T Consensus       407 kiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYf  462 (541)
T KOG2442|consen  407 KIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYF  462 (541)
T ss_pred             CcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEE
Confidence            999999999999     889999999999999999999999999999998666654

>KOG2443 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00730 PSN Presenilin, signal peptide peptidase, family Back     alignment and domain information
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 Back     alignment and domain information
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] Back     alignment and domain information
>cd00538 PA PA: Protease-associated (PA) domain Back     alignment and domain information
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 Back     alignment and domain information
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 Back     alignment and domain information
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function Back     alignment and domain information
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information
>COG3389 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 Back     alignment and domain information
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like Back     alignment and domain information
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 Back     alignment and domain information
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 Back     alignment and domain information
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) Back     alignment and domain information
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 2e-13
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 3e-06
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 7e-04
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 Back     alignment and structure
 Score = 68.3 bits (166), Expect = 2e-13
 Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 13/139 (9%)

Query: 64  FVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCS----------MPKHKYAGDVIMVDRG 113
            +     +G     +      +        + C+                   + ++ RG
Sbjct: 54  ELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRG 113

Query: 114 N-CKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEK 172
             C F  K ++A   GAS  +I N      +++         + I A+M+    G  + +
Sbjct: 114 GGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG--AVDIVAIMIGNLKGTKILQ 171

Query: 173 MLLNTSSVSVQLYSPRRPV 191
            +     V++ +   ++  
Sbjct: 172 SIQRGIQVTMVIEVGKKHG 190
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 99.86
4hyg_A301 Putative uncharacterized protein; protease, membra 99.71
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.05
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 98.92
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 98.57
3kas_A 640 Transferrin receptor protein 1; transferrin recept 98.4
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 98.3
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 98.05
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 97.92
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 89.99
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.86  E-value=3.9e-21  Score=181.31  Aligned_cols=128  Identities=17%  Similarity=0.209  Sum_probs=104.6

Q ss_pred             Eeeeec--C--CcceeEEecccccCCcccccccCcceEEEEecC---CCCCCCCCCC---C-------CCCeEEEEecCC
Q 011904           52 VQTWID--G--IENEEFVGVGARFGTTIVSKEKNANQIHLTLSH---PRDCCSMPKH---K-------YAGDVIMVDRGN  114 (475)
Q Consensus        52 ~~~~~~--g--~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~---p~daC~~~~~---~-------l~g~IaLV~RG~  114 (475)
                      +-+|.|  |  +...++.+.+|+||..+|.+   +.++.++.+.   |.+||++.+.   +       .+||||||+||+
T Consensus        38 n~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~---~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~  114 (194)
T 3icu_A           38 NVSWRVPHTGVNRTVWELSEEGVYGQDSPLE---PVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGG  114 (194)
T ss_dssp             EEEEECCSSCTTCEEEEEEEEEEECTTSCCS---CEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCT
T ss_pred             EEEEECCCCCccceeeecccccccCCCCCCC---CcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCC
Confidence            446765  4  55667899999999998876   4778888764   7899998762   1       368999999999


Q ss_pred             -CCHHHHHHHHHHcCCcEEEEEeCCC---cccccccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEEecC
Q 011904          115 -CKFTTKANIAEAAGASALLIINNQK---ELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSP  187 (475)
Q Consensus       115 -CsF~~Ka~~Aq~aGA~avIV~n~~~---~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l~~p  187 (475)
                       |+|.+|++|||++||+|+||||+++   ....|...     ...+||++||++++|+.|++++++|.+|++++...
T Consensus       115 ~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg  186 (194)
T 3icu_A          115 GCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVG  186 (194)
T ss_dssp             TCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             CcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECC
Confidence             9999999999999999999999852   35667542     13579999999999999999999999998887643
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
d1de4c2193 Transferrin receptor ectodomain, apical domain {Hu 98.6
d3bi1a2233 Glutamate carboxypeptidase II {Human (Homo sapiens 98.32
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.9e-08  Score=91.02  Aligned_cols=91  Identities=18%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             cceEEEEecCCCCCCCC-----CCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc------------ccc
Q 011904           82 ANQIHLTLSHPRDCCSM-----PKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL------------YKM  144 (475)
Q Consensus        82 ~~~~~Lv~~~p~daC~~-----~~~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l------------~~M  144 (475)
                      .++++++.++-   |..     +..+++|||+|++||+|.|.+|+++||++||+|+|||+|..+.            ..+
T Consensus        38 ~v~g~lVy~n~---G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~  114 (193)
T d1de4c2          38 TVTGKLVHANF---GTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHL  114 (193)
T ss_dssp             EEEECEEECST---TCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCS
T ss_pred             ceeEEEEEccC---CCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCccccccccccc
Confidence            46778888752   221     2357899999999999999999999999999999999874320            011


Q ss_pred             ccCC----------------CCCCCCcceeEEEeccchhhhHHHHhh
Q 011904          145 VCDP----------------DETDLDIHIPAVMMPQDAGASLEKMLL  175 (475)
Q Consensus       145 ~~~~----------------~~~~~~i~IPvv~Is~~~G~~L~~~l~  175 (475)
                      ..++                .+...-.+||+.-|+.+|++.|++.|.
T Consensus       115 ~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         115 GTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             SSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            1100                011123479999999999999999884
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure