Citrus Sinensis ID: 011925
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NUT3 | 480 | Major facilitator superfa | yes | no | 0.8 | 0.791 | 0.318 | 1e-50 | |
| Q3U481 | 476 | Major facilitator superfa | yes | no | 0.821 | 0.819 | 0.324 | 4e-50 | |
| P94488 | 463 | Uncharacterized symporter | yes | no | 0.421 | 0.431 | 0.263 | 2e-05 | |
| P74168 | 544 | Uncharacterized symporter | N/A | no | 0.301 | 0.262 | 0.290 | 0.0008 |
| >sp|Q6NUT3|MFS12_HUMAN Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 218/415 (52%), Gaps = 35/415 (8%)
Query: 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
+P+ + L Y GH LND+ A+ WFTYLLL+L + S RGA ++L GQ+ADG T
Sbjct: 15 RPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTP 74
Query: 78 FIGELIDR-------FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYC 130
+G DR +G K WH G+V V +SF +F C+ C + + + Y
Sbjct: 75 LVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCG--AATPEWAALLYYG 132
Query: 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV- 189
F IF GWA+TQ++H+S++ + N +V LT+ R AFT+VAN+++Y A+++ +
Sbjct: 133 PFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHLQ 192
Query: 190 --STAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS 237
S + D+ +Q +R ++ + +G F +F T E R
Sbjct: 193 GSSRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRERRRPHAEEPGE 252
Query: 238 HARIS----------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA 287
H + W +W ++ +YQV ++YM TRL+VN+SQ Y+A Y+ L + +
Sbjct: 253 HTPLLAPATAQPLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKKF 312
Query: 288 KALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYV 347
A +P ++Y+ F+ S L++ + R Y+S G+L + A + L + +Y
Sbjct: 313 IATIPLVMYLSGFLSSFLMKPINKCIGRNMTYFS--GLLVILAFAAWVALAEGLGVAVYA 370
Query: 348 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402
A+ +G A ++VT ++M L+G + AFV G++SFLDK++ G+AV +QS
Sbjct: 371 AAVLLGAGCATILVTSLAMTADLIGPHTNSGAFVYGSMSFLDKVANGLAVMAIQS 425
|
Homo sapiens (taxid: 9606) |
| >sp|Q3U481|MFS12_MOUSE Major facilitator superfamily domain-containing protein 12 OS=Mus musculus GN=Mfsd12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 138/425 (32%), Positives = 219/425 (51%), Gaps = 35/425 (8%)
Query: 12 ENDDSFTQPVGRWSV---LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLS 67
+DD+ P S+ L + GH LND+ A WFTYLLLFL + G S RGA ++L
Sbjct: 4 PSDDAGPGPPRTLSLAARLSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLL 63
Query: 68 GQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122
GQ+ADG T +G DR G K WH AG+V V +SF +F C+ C +
Sbjct: 64 GQVADGLCTPLVGYEADRASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCG--EATPE 121
Query: 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182
+ Y F +F GWAATQ+AH+S++ + + +V LT+ R AFT+VAN+++Y
Sbjct: 122 WAALLYYGPFIVVFQFGWAATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGA 181
Query: 183 AFIVFSVS-TAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM 231
A+++ + +A D+ +Q +R +A + +G F +F T+E
Sbjct: 182 AWLLLHLQGSAHGEQDISVGDQLGVQDVPVFRNLALLVVGVGAIFSLLFHLGTKEGHRSQ 241
Query: 232 --GLRGNSHARIS---------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 280
G N H + W +W ++ +YQV ++YM TRL+VN+SQ Y+A Y+
Sbjct: 242 HWGNEPNEHTPLVAPAAQPLLLWKHWLREPAFYQVGMLYMTTRLIVNLSQTYIAMYLTYS 301
Query: 281 LRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMN 340
L + + A +P ++Y+ F S L++ + R Y++ G+L + A + L N
Sbjct: 302 LSLPKKFIATIPLVMYLSGFFSSFLMKPVNRRIGRNMTYFT--GLLVILAFAAWVALADN 359
Query: 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400
+ +Y A+ +G A ++VT ++M L+G AFV G +SF DK++ G+AV +
Sbjct: 360 LGVAVYGAAVLLGAGCATILVTSLAMTADLIGPHTHSGAFVYGAMSFSDKVANGLAVMAV 419
Query: 401 QSYQS 405
QS
Sbjct: 420 QSLHP 424
|
Mus musculus (taxid: 10090) |
| >sp|P94488|YNAJ_BACSU Uncharacterized symporter YnaJ OS=Bacillus subtilis (strain 168) GN=ynaJ PE=3 SV=2 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
Y SG ++ A TYLL F TD+ GLS A + L +I D A FIG ++D
Sbjct: 17 YASGDFACNLIYATVSTYLLFFYTDVFGLSAAAAGTMFLVVRIIDALADPFIGTIVDRTN 76
Query: 85 -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST---STLKVETISYCVFAAIFNVGW 140
RFG F+ + + G P IL+ +T + ++A I VG
Sbjct: 77 SRFGRFRPY--------------LLFGAFPFVILAILCFTTPDFSDMGKLIYAYITYVGL 122
Query: 141 AAT----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196
+ T V + ++ + +T N+ V +TS R F ANL +AF V ++ +
Sbjct: 123 SLTYTTINVPYGALTSAMTRNNQEVVSITSVRMLF---ANLGGLVVAFFVPLLAAYLSDT 179
Query: 197 DLENQYRWIAYSSIF--IGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 249
W I IG C + IF ++ + R+ + S +I + F++
Sbjct: 180 SGNESLGWQLTMGILGMIGGCLL-IFCFKSTKERVTL---QKSEEKIKFTDIFEQ 230
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P74168|Y1374_SYNY3 Uncharacterized symporter sll1374 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1374 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 12/155 (7%)
Query: 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
L YG+G ITA YLL FLTD+ G+ A +V++ G+I D IG L D
Sbjct: 16 LAYGAGDFGPAITANILVFYLLFFLTDVAGIPAALAGSVLMIGKIFDAINDPIIGLLSDR 75
Query: 85 ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE---TISYCVFAAIFNV 138
R+G W G + A+ +++ + +P S L + I Y A FN+
Sbjct: 76 TRSRWGRRLPWMLGGMIPFALFYTAQW--LIPH--FSDDRLTNQWGLFIYYVAIAMAFNL 131
Query: 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173
+ + + ++ +T N R L S R AF++
Sbjct: 132 CYTTVNLPYTALTPELTQNYNERTRLNSFRFAFSI 166
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| 255542273 | 454 | conserved hypothetical protein [Ricinus | 0.955 | 1.0 | 0.742 | 0.0 | |
| 224106589 | 442 | predicted protein [Populus trichocarpa] | 0.924 | 0.993 | 0.723 | 0.0 | |
| 224120942 | 457 | predicted protein [Populus trichocarpa] | 0.955 | 0.993 | 0.720 | 0.0 | |
| 359487445 | 453 | PREDICTED: uncharacterized MFS-type tran | 0.943 | 0.988 | 0.711 | 0.0 | |
| 356557090 | 452 | PREDICTED: uncharacterized MFS-type tran | 0.949 | 0.997 | 0.713 | 0.0 | |
| 356525698 | 452 | PREDICTED: uncharacterized MFS-type tran | 0.949 | 0.997 | 0.709 | 0.0 | |
| 297820866 | 459 | AT3g60070/T2O9_50 [Arabidopsis lyrata su | 0.949 | 0.982 | 0.699 | 0.0 | |
| 357451101 | 453 | MFS-type transporter, putative [Medicago | 0.951 | 0.997 | 0.697 | 0.0 | |
| 240255671 | 458 | major facilitator protein [Arabidopsis t | 0.947 | 0.982 | 0.697 | 0.0 | |
| 255646539 | 452 | unknown [Glycine max] | 0.949 | 0.997 | 0.702 | 0.0 |
| >gi|255542273|ref|XP_002512200.1| conserved hypothetical protein [Ricinus communis] gi|223548744|gb|EEF50234.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/469 (74%), Positives = 404/469 (86%), Gaps = 15/469 (3%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M DIE+D+S+ +PVGRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1 MGDDIEDDNSYPKPVGRWPVFYYGVGHMLNDITAACWFTYLLLFLTDIGLSPRDAATVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
SGQIADGFATIF GELIDRFGHFK+WHGAGSVLVA+SFSSVFGGC PC+IL T++ +ET
Sbjct: 61 SGQIADGFATIFAGELIDRFGHFKVWHGAGSVLVAISFSSVFGGCFPCKILGTNSSTIET 120
Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
+SY +FAAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+ SCRNAFTMVANLSLYAIA +
Sbjct: 121 VSYSIFAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMASCRNAFTMVANLSLYAIALTI 180
Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
F+VS A+THAD++NQYRWIAY SI GCCFVGIF T+EPRLK+ L S ARISW YW
Sbjct: 181 FNVSKAETHADIQNQYRWIAYLSICFGCCFVGIFHLGTKEPRLKISLHEISCARISWTYW 240
Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
FKKILYYQV LVY+LTRLV NVSQAYLAFYVINDLRM QSAKALVPAIIYI SF++S+++
Sbjct: 241 FKKILYYQVGLVYVLTRLVQNVSQAYLAFYVINDLRMAQSAKALVPAIIYISSFVISVIM 300
Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 366
QE++WTGQRLKAYYSAGG+LW+FCGA IL+LP +MSAFMY+++IF+GI NALM VTG+SM
Sbjct: 301 QEISWTGQRLKAYYSAGGILWMFCGASILLLPRSMSAFMYIISIFIGIGNALMTVTGVSM 360
Query: 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 426
++VLVG DL+GCAFVCG+L FLDK+SCG+A+Y LQS+Q++SP V DN
Sbjct: 361 ESVLVGSDLNGCAFVCGSLGFLDKISCGLALYALQSFQTISPKVQDN------------- 407
Query: 427 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 475
+S +ISVTRFGLGL+PA CSLV V VT++MKLHT Y KPL+EPLL+
Sbjct: 408 --LSIEHISVTRFGLGLVPAFCSLVGVGVTYSMKLHTAYPKPLIEPLLE 454
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106589|ref|XP_002314218.1| predicted protein [Populus trichocarpa] gi|222850626|gb|EEE88173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/466 (72%), Positives = 393/466 (84%), Gaps = 27/466 (5%)
Query: 10 DIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQ 69
D+E+DDS +PVGR SV YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA VML+GQ
Sbjct: 4 DVEDDDSCPKPVGRSSVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAIVMLAGQ 63
Query: 70 IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISY 129
IADGFAT+F GELIDRFGHFKIWHGAGS+L A+SFSSVFGGC+PC+IL++S+ +ETISY
Sbjct: 64 IADGFATVFAGELIDRFGHFKIWHGAGSILAAISFSSVFGGCLPCKILASSSPIIETISY 123
Query: 130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189
AAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+TSCRNAFTMVANLSLYA+A +VFS
Sbjct: 124 STSAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMTSCRNAFTMVANLSLYAVALVVFST 183
Query: 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 249
+ A TH+D+ENQY WIAY+SIFIGCCFVGIF T+EPRLK+ + G S+ARISWAYWFKK
Sbjct: 184 TKATTHSDIENQYHWIAYTSIFIGCCFVGIFHLGTKEPRLKIRVHGTSYARISWAYWFKK 243
Query: 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM 309
+LYYQV LVYMLTRL NVSQAYLAFYVI D+RM +SAKALVPAIIYI SFIVSI++QEM
Sbjct: 244 VLYYQVGLVYMLTRLAQNVSQAYLAFYVIEDMRMAKSAKALVPAIIYISSFIVSIIMQEM 303
Query: 310 AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNV 369
WTGQRLKAYY AGGVLWVFCGA IL LP ++SAFMYV+++F+G+AN LM +TG+SMQ+V
Sbjct: 304 YWTGQRLKAYYCAGGVLWVFCGASILFLPRSLSAFMYVISVFIGVANTLMTITGVSMQSV 363
Query: 370 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLI 429
LVG DL GCAFV G+LSFLDK+SCG+AV+VLQS+Q
Sbjct: 364 LVGSDLDGCAFVYGSLSFLDKVSCGLAVFVLQSFQ------------------------- 398
Query: 430 STSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 475
YISVTR+GLGL+PA+CSL +A+T+TMKL TP+SK L+EPLL+
Sbjct: 399 --KYISVTRYGLGLLPAVCSLTGMAITYTMKLQTPHSKSLMEPLLE 442
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120942|ref|XP_002330864.1| predicted protein [Populus trichocarpa] gi|222872686|gb|EEF09817.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/472 (72%), Positives = 399/472 (84%), Gaps = 18/472 (3%)
Query: 7 MNYDIENDD---SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAA 63
M D+ENDD S+ +PVGR V YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA
Sbjct: 1 MRNDVENDDDDDSYPKPVGRRCVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAI 60
Query: 64 VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123
ML+GQIADGFAT+F GELIDRFGHFK+WHGAGS+LVA+SFSSVFGGC+PC+IL++ +
Sbjct: 61 AMLAGQIADGFATVFAGELIDRFGHFKVWHGAGSILVAISFSSVFGGCLPCKILASCSSV 120
Query: 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183
VET+SY AAIFNVGWAATQV+HMSMVNCI+LNS+SRVV+TSCRNAFTMVANLSLYA+A
Sbjct: 121 VETVSYSTSAAIFNVGWAATQVSHMSMVNCISLNSSSRVVMTSCRNAFTMVANLSLYAVA 180
Query: 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISW 243
+VFS A THAD+ENQYRWIAY+SIFIGCCFVGIF T+EPRLK+ + G S+ARISW
Sbjct: 181 LVVFSSIKATTHADIENQYRWIAYTSIFIGCCFVGIFHLGTKEPRLKICVHGTSNARISW 240
Query: 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVS 303
AYWFKK+LYYQV LVYMLTRLV NVSQ YLAFYV++DL+M +SAKALVPAIIY+ SF VS
Sbjct: 241 AYWFKKVLYYQVGLVYMLTRLVQNVSQVYLAFYVMDDLQMAKSAKALVPAIIYMSSFFVS 300
Query: 304 ILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTG 363
+++QEM+WTGQRLKAYYSAGG+LWVFCGAGIL LP NMSAFMYV+++ +GIANALM VTG
Sbjct: 301 VIMQEMSWTGQRLKAYYSAGGILWVFCGAGILFLPRNMSAFMYVISVLIGIANALMTVTG 360
Query: 364 ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVL 423
+SMQ++LVG DL+GCAFV G+LSFLDK+SCG+AV+ LQS+QS SP
Sbjct: 361 VSMQSILVGSDLNGCAFVYGSLSFLDKISCGLAVFALQSFQSSSP--------------- 405
Query: 424 DNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 475
+ST Y SVTR+GLGL+PA+CSL VA+T+TMKL T SK L+EPLL+
Sbjct: 406 KTEEALSTDYFSVTRYGLGLLPAVCSLAGVAITYTMKLQTQDSKSLMEPLLE 457
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487445|ref|XP_002270525.2| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Vitis vinifera] gi|297741204|emb|CBI32155.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/464 (71%), Positives = 392/464 (84%), Gaps = 16/464 (3%)
Query: 11 IENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI 70
+E+DD+FT+P+GR +V YYG GHMLNDIT+ACWFTYLL+FLTDIGL R AA VMLSGQI
Sbjct: 5 MEDDDAFTKPLGRQAVFYYGVGHMLNDITSACWFTYLLVFLTDIGLPSRDAATVMLSGQI 64
Query: 71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYC 130
ADGF TIF GELIDRFGHFKIWHGAGS+LVAVSFSSVFGGC+PC+I +++ ++T+ Y
Sbjct: 65 ADGFTTIFAGELIDRFGHFKIWHGAGSILVAVSFSSVFGGCLPCKIFGSNSSTLQTVGYS 124
Query: 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190
+FAAIFNVGWAATQV+HMSMVNCITLNSTSRVVL SCRNAFTMVANLSLYA+AF+VF+ S
Sbjct: 125 MFAAIFNVGWAATQVSHMSMVNCITLNSTSRVVLASCRNAFTMVANLSLYAVAFVVFNSS 184
Query: 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI 250
T D+ENQYRWIAY SI IGCCFV IFL T+EPRLK G G +ARI W++WF+K+
Sbjct: 185 KPHTLVDIENQYRWIAYLSIAIGCCFVAIFLLGTKEPRLKKGAHGKGYARILWSHWFRKV 244
Query: 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMA 310
LYYQVALVY+LTRLV NVSQA+LAFYVINDL+M QS+KALVPAIIYICSFIVSI+LQE
Sbjct: 245 LYYQVALVYVLTRLVTNVSQAFLAFYVINDLQMSQSSKALVPAIIYICSFIVSIILQEFT 304
Query: 311 WTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL 370
W+GQRLKA+YSAGG+LW+ CGAGIL LP NM+AFMY+L+I +GIANALMMVTG+SMQ+ L
Sbjct: 305 WSGQRLKAFYSAGGILWIICGAGILFLPRNMNAFMYILSIIIGIANALMMVTGVSMQSFL 364
Query: 371 VGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLIS 430
VGEDL GCAFV G+LSFLDK+SCG+A++VL+SY + SP + S+IS
Sbjct: 365 VGEDLHGCAFVYGSLSFLDKISCGLALFVLESYGNSSPDL--------------QGSVIS 410
Query: 431 TSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 474
SV+R+GLG++PA+C+LV V VT+TM LHTP KP++EPLL
Sbjct: 411 R--FSVSRYGLGVVPAVCALVGVVVTYTMNLHTPVPKPIMEPLL 452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557090|ref|XP_003546851.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/468 (71%), Positives = 391/468 (83%), Gaps = 17/468 (3%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M +E DD++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AAAVML
Sbjct: 1 MGTIVEADDTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAAVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
SGQ+ADGFATI +GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++ ET
Sbjct: 61 SGQVADGFATILVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSCTFET 120
Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
+SY VFAAIFN+GWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 VSYSVFAAIFNLGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180
Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
FSV KTH D+ENQYRWIAY SIFIGCCFVG+FL T+EPRLK+G+ G HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYFSIFIGCCFVGVFLLATKEPRLKLGVHGMVHARISWDYW 240
Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
FK+ILYYQVALVY+LTRLV+N+SQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNISQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300
Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 366
QE+AWTG+ LKAYYSAG +LW+FCGA IL+L NMS MY++++F+GIANALMMVTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360
Query: 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 426
QN L+G +L+GCAFV G+LSFLDK+SCGIA+YVLQS Q++SP + + T
Sbjct: 361 QNFLIGGNLNGCAFVVGSLSFLDKISCGIALYVLQSNQNLSPQL----QATTQFP----- 411
Query: 427 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 474
SVTR GLGL+PA C+LV V VT TM H P SK + PLL
Sbjct: 412 -------FSVTRVGLGLVPAFCALVGVVVTCTMDFHNP-SKSMTAPLL 451
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525698|ref|XP_003531460.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/468 (70%), Positives = 390/468 (83%), Gaps = 17/468 (3%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1 MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
SGQ+ADGF TIF+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++ ET
Sbjct: 61 SGQVADGFVTIFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120
Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
+SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180
Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
FSV KTH D+ENQYRWIAY SIFIGCCFVG+F T+EPRLK+G+ G HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYLSIFIGCCFVGVFHLATKEPRLKVGVHGMVHARISWDYW 240
Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300
Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 366
QE+AWTG+ LKAYYSAG +LW+FCGA IL+L NMS MY++++F+GIANALMMVTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360
Query: 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 426
QN L+GE+L+GCAFV G+LSFLDK+SCG+A+YVLQS Q++SP + + T
Sbjct: 361 QNFLIGENLNGCAFVVGSLSFLDKISCGLALYVLQSNQNLSPQL----QATTQFP----- 411
Query: 427 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 474
SVTR GLGL+PA C+LV V VT TM H P SK L PLL
Sbjct: 412 -------FSVTRIGLGLVPAFCALVGVVVTCTMDFHNP-SKSLTAPLL 451
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820866|ref|XP_002878316.1| AT3g60070/T2O9_50 [Arabidopsis lyrata subsp. lyrata] gi|297324154|gb|EFH54575.1| AT3g60070/T2O9_50 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/466 (69%), Positives = 390/466 (83%), Gaps = 15/466 (3%)
Query: 13 NDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIAD 72
+D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+AD
Sbjct: 6 EEDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVAD 65
Query: 73 GFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF 132
FATIF GELIDRFGHFKIWH AGS+LVA+SFSSVFGGC+PC IL +L +ET SY +F
Sbjct: 66 AFATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMF 125
Query: 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192
AAIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V A
Sbjct: 126 AAIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIKA 185
Query: 193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252
+ D E QYRWIAYSSI IGCCFV IFL T+EPRL++ L+ S ARI W YWF+K+LY
Sbjct: 186 GSKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKQTSRARIPWVYWFRKLLY 245
Query: 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWT 312
YQVA+VY+LTRLV+NVSQAYLAF+VI+DL+MGQSAKALVPAIIYICSF+VS+LLQE+ W
Sbjct: 246 YQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMGQSAKALVPAIIYICSFVVSVLLQEIPWN 305
Query: 313 GQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVG 372
G+RLKAYY+AGG++W+FCGA IL+LP ++S+FMY +++F+GIANALMMVT ISMQ+VLVG
Sbjct: 306 GRRLKAYYTAGGIIWIFCGAAILLLPRDISSFMYAISVFIGIANALMMVTAISMQSVLVG 365
Query: 373 EDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTS 432
++ GCAFVCG+LSFLDKMSCG+A+YVLQS+Q+ SP NN++ S+
Sbjct: 366 AEVGGCAFVCGSLSFLDKMSCGLALYVLQSHQTTSPRGQLNNNNQQSV------------ 413
Query: 433 YISVTRFGLGLIPAICSLVSVAVTFTMKLHTP--YSKPLV-EPLLQ 475
Y+SVTR+GLGL+PA+CS V VAVTF M+L SKPL+ EPLL+
Sbjct: 414 YLSVTRYGLGLVPALCSFVGVAVTFFMELEAAGSLSKPLLREPLLE 459
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357451101|ref|XP_003595827.1| MFS-type transporter, putative [Medicago truncatula] gi|124360106|gb|ABN08122.1| C19orf28 protein, related [Medicago truncatula] gi|355484875|gb|AES66078.1| MFS-type transporter, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/469 (69%), Positives = 388/469 (82%), Gaps = 17/469 (3%)
Query: 6 VMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM 65
+M IE DD+FT+ +GR + YYG GHMLNDIT+ACWFTYLLLFLTDIG SPR AA VM
Sbjct: 1 MMGTVIEEDDTFTKALGRGPIFYYGMGHMLNDITSACWFTYLLLFLTDIGFSPRNAAIVM 60
Query: 66 LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125
LSGQ+AD FAT+F+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC I ++ ++ E
Sbjct: 61 LSGQVADAFATVFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCTIFTSDSITFE 120
Query: 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185
T+SY VFAAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYAIA I
Sbjct: 121 TVSYSVFAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAIALI 180
Query: 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAY 245
VFSV KT+A++ENQYRWIAY SIFIGCCFVGIFL T+EPRL+M + G + RISWAY
Sbjct: 181 VFSVVNGKTYANVENQYRWIAYVSIFIGCCFVGIFLLATKEPRLQMDVHGKARGRISWAY 240
Query: 246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL 305
WFK++LYYQVAL+Y+LTRL+VN+SQAYLAFYVINDL+M QSAKALVPAIIYI SFIVSI
Sbjct: 241 WFKRVLYYQVALIYVLTRLIVNISQAYLAFYVINDLQMAQSAKALVPAIIYISSFIVSIA 300
Query: 306 LQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGIS 365
LQE+AWTG+ LKAY+SAG +LW+FCGA I++L +MS MY++++F+GIANALMMVTGIS
Sbjct: 301 LQEIAWTGKLLKAYFSAGSILWIFCGAVIMLLTDHMSYAMYIVSVFIGIANALMMVTGIS 360
Query: 366 MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDN 425
MQN L+GE+L+GCAFV G+LSFLDKMSCGIA+Y+LQSYQ++SP +
Sbjct: 361 MQNFLIGENLNGCAFVVGSLSFLDKMSCGIALYILQSYQNISPQL--------------- 405
Query: 426 NSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 474
I+ S+TR GLGL+PA+C+L+ V V TM H P S L PLL
Sbjct: 406 -QAINQFPPSITRLGLGLVPAVCALLGVVVACTMDFHHP-SNSLTAPLL 452
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255671|ref|NP_191566.5| major facilitator protein [Arabidopsis thaliana] gi|21703097|gb|AAM74491.1| AT3g60070/T2O9_50 [Arabidopsis thaliana] gi|332646487|gb|AEE80008.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/466 (69%), Positives = 387/466 (83%), Gaps = 16/466 (3%)
Query: 13 NDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIAD 72
+D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+AD
Sbjct: 6 EEDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVAD 65
Query: 73 GFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF 132
FATIF GELIDRFGHFKIWH AGS+LVA+SFSSVFGGC+PC IL +L +ET SY +F
Sbjct: 66 AFATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMF 125
Query: 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192
AAIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V A
Sbjct: 126 AAIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIKA 185
Query: 193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252
+ D E QYRWIAYSSI IGCCFV IFL T+EPRL++ L+ S ARI W YWF+KILY
Sbjct: 186 GSKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKETSRARIPWVYWFRKILY 245
Query: 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWT 312
YQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKALVPAIIYICSF+VS+LLQE+ W
Sbjct: 246 YQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMDQSAKALVPAIIYICSFVVSVLLQEIPWN 305
Query: 313 GQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVG 372
G+RLKAYY+AGG++W+FCGA IL+LP ++S+FMY +++F+GIANALMMVT ISMQ+VLVG
Sbjct: 306 GKRLKAYYTAGGIIWIFCGAAILLLPRDISSFMYAISVFIGIANALMMVTAISMQSVLVG 365
Query: 373 EDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTS 432
++ GCAFVCG+LSFLDKMSCG+A+YVLQS+Q+ SP NN+ +
Sbjct: 366 AEVGGCAFVCGSLSFLDKMSCGLALYVLQSHQTTSPRGQLNNNQ-------------QSV 412
Query: 433 YISVTRFGLGLIPAICSLVSVAVTFTMKLHTP--YSKPLV-EPLLQ 475
Y+SVTR+GLGL+PA+CS V VAVTF M+L SKPL+ EPLL+
Sbjct: 413 YLSVTRYGLGLVPALCSFVGVAVTFFMELEAAGSLSKPLLREPLLE 458
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255646539|gb|ACU23744.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/468 (70%), Positives = 387/468 (82%), Gaps = 17/468 (3%)
Query: 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
M +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1 MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60
Query: 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
SGQ+ADGF TIF+GELI RFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++ ET
Sbjct: 61 SGQVADGFVTIFVGELIGRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120
Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
+SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180
Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
FSV KTH D+ENQYRWIAY SIFIGCCFVG+F T+EPRLK+G+ G HARISW YW
Sbjct: 181 FSVIIGKTHDDVENQYRWIAYLSIFIGCCFVGVFRLATKEPRLKVGVHGMVHARISWGYW 240
Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300
Query: 307 QEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 366
QE+AWTG+ LKAYYSAG +LW+FCGA IL+L NMS MY++++F+GIANALMMVTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360
Query: 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 426
QN L+GE+L+GCAFV G+LSFLDK+SCG+A+YV QS Q++ P + + T
Sbjct: 361 QNFLIGENLNGCAFVVGSLSFLDKISCGLALYVFQSNQNLFPQL----QATTQFP----- 411
Query: 427 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 474
SVTR GLGL+PA C+LV V VT TM H P SK L PLL
Sbjct: 412 -------FSVTRIGLGLVPAFCALVGVVVTCTMDFHNP-SKSLTAPLL 451
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| TAIR|locus:2101442 | 458 | AT3G60070 "AT3G60070" [Arabido | 0.945 | 0.980 | 0.670 | 6.6e-168 | |
| TAIR|locus:2050626 | 462 | AT2G44280 "AT2G44280" [Arabido | 0.968 | 0.995 | 0.645 | 1.1e-167 | |
| UNIPROTKB|Q6NUT3 | 480 | MFSD12 "Major facilitator supe | 0.349 | 0.345 | 0.346 | 1.6e-45 | |
| MGI|MGI:3604804 | 476 | Mfsd12 "major facilitator supe | 0.353 | 0.352 | 0.350 | 4.3e-44 | |
| ZFIN|ZDB-GENE-030131-4642 | 507 | mfsd12a "major facilitator sup | 0.416 | 0.390 | 0.331 | 3.6e-42 | |
| WB|WBGene00017530 | 501 | F16H11.1 [Caenorhabditis elega | 0.665 | 0.630 | 0.302 | 3.9e-37 | |
| TIGR_CMR|CPS_3708 | 442 | CPS_3708 "sugar:cation symport | 0.728 | 0.782 | 0.229 | 5.9e-05 |
| TAIR|locus:2101442 AT3G60070 "AT3G60070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1633 (579.9 bits), Expect = 6.6e-168, P = 6.6e-168
Identities = 312/465 (67%), Positives = 372/465 (80%)
Query: 14 DDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADG 73
+D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+AD
Sbjct: 7 EDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVADA 66
Query: 74 FATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFA 133
FATIF GELIDRFGHFKIWH C+PC IL +L +ET SY +FA
Sbjct: 67 FATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMFA 126
Query: 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
AIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V A
Sbjct: 127 AIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIKAG 186
Query: 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY 253
+ D E QYRWIAYSSI IGCCFV IFL T+EPRL++ L+ S ARI W YWF+KILYY
Sbjct: 187 SKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKETSRARIPWVYWFRKILYY 246
Query: 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTG 313
QVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKALVPAIIYICSF+VS+LLQE+ W G
Sbjct: 247 QVAMVYLLTRLVLNVSQAYLAFFVIDDLQMDQSAKALVPAIIYICSFVVSVLLQEIPWNG 306
Query: 314 QRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGE 373
+RLKAYY+AGG++W+FCGA IL+LP ++S+FMY +++F+GIANALMMVT ISMQ+VLVG
Sbjct: 307 KRLKAYYTAGGIIWIFCGAAILLLPRDISSFMYAISVFIGIANALMMVTAISMQSVLVGA 366
Query: 374 DLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSY 433
++ GCAFVCG+LSFLDKMSCG+A+YVLQS+Q+ SP L+NN + Y
Sbjct: 367 EVGGCAFVCGSLSFLDKMSCGLALYVLQSHQTTSPR-----------GQLNNNQ--QSVY 413
Query: 434 ISVTRFGLGLIPAICSLVSVAVTFTMKLHTP--YSKPLV-EPLLQ 475
+SVTR+GLGL+PA+CS V VAVTF M+L SKPL+ EPLL+
Sbjct: 414 LSVTRYGLGLVPALCSFVGVAVTFFMELEAAGSLSKPLLREPLLE 458
|
|
| TAIR|locus:2050626 AT2G44280 "AT2G44280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1631 (579.2 bits), Expect = 1.1e-167, P = 1.1e-167
Identities = 306/474 (64%), Positives = 376/474 (79%)
Query: 1 MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
MTSS ++ + E +D T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR
Sbjct: 1 MTSSVIVGMEEEEEDPSTKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 60
Query: 61 AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTS 120
AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH C+PC +L +
Sbjct: 61 AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSLLHNN 120
Query: 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
+ +ET+SY +FAAIFN+GWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct: 121 SSTIETLSYSMFAAIFNIGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 180
Query: 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
AIA +VF VS A T + E+QYRWIAYSSI +GCCFV IFL T+EPRL++ LR S AR
Sbjct: 181 AIALVVFGVSEAVTKENTESQYRWIAYSSITVGCCFVVIFLMGTKEPRLRINLRETSRAR 240
Query: 241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIY+CSF
Sbjct: 241 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYVCSF 300
Query: 301 IVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMM 360
+VS++LQE+ W G+RLKAYY AGG++W+FCG IL+LP +++++MY +++F+GIANA+M+
Sbjct: 301 VVSVMLQEIPWNGKRLKAYYCAGGIIWIFCGISILLLPRSINSYMYAISVFIGIANAVML 360
Query: 361 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSL 420
VT ISMQ+VL+G L GCAFVCG+LSFLDKMSCG+A+YVLQS+Q SP V D N
Sbjct: 361 VTSISMQSVLIGSKLGGCAFVCGSLSFLDKMSCGLALYVLQSHQGTSPKV-DVN------ 413
Query: 421 TVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 474
+ Y SVTR+GLGL+PA+CSLV V VT+ M+L + KPL +PLL
Sbjct: 414 -------IKEYFYFSVTRYGLGLVPAVCSLVGVVVTYFMELDSTILKPLCQPLL 460
|
|
| UNIPROTKB|Q6NUT3 MFSD12 "Major facilitator superfamily domain-containing protein 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 61/176 (34%), Positives = 93/176 (52%)
Query: 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
+P+ + L Y GH LND+ A+ WFTYLLL+L + S RGA ++L GQ+ADG T
Sbjct: 15 RPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTP 74
Query: 78 FIGELIDR-------FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYC 130
+G DR +G K WH C+ C + + + Y
Sbjct: 75 LVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCGAATPEWAAL--LYYG 132
Query: 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
F IF GWA+TQ++H+S++ + N +V LT+ R AFT+VAN+++Y A+++
Sbjct: 133 PFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLL 188
|
|
| MGI|MGI:3604804 Mfsd12 "major facilitator superfamily domain containing 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 4.3e-44, Sum P(2) = 4.3e-44
Identities = 62/177 (35%), Positives = 91/177 (51%)
Query: 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
L + GH LND+ A WFTYLLLFL + G S RGA ++L GQ+ADG T +G DR
Sbjct: 22 LSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLLGQVADGLCTPLVGYEADR 81
Query: 86 F-----GHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGW 140
G K WH C+ C + + + Y F +F GW
Sbjct: 82 ASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCGEATPEWAAL--LYYGPFIVVFQFGW 139
Query: 141 AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197
AATQ+AH+S++ + + +V LT+ R AFT+VAN+++Y A+++ + H +
Sbjct: 140 AATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGAAWLLLHLQ-GSAHGE 195
|
|
| ZFIN|ZDB-GENE-030131-4642 mfsd12a "major facilitator superfamily domain containing 12a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 71/214 (33%), Positives = 105/214 (49%)
Query: 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
L Y GH LND+ A+ WFTYLL+F + G A ++L GQIADG T IG DR
Sbjct: 15 LSYSVGHFLNDLCASMWFTYLLVFYHSVLGFENTYAGVLLLVGQIADGVCTPLIGYESDR 74
Query: 86 ------FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVG 139
+G K WH C+ C L+T V + F IF G
Sbjct: 75 TPGCGSYGKRKTWHLVGTISVLLSFPFIFNQCLGCD-LNTPQW-VSVTYFAPFIIIFQFG 132
Query: 140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199
WAATQ++H+S++ + +V LT+ R AFT++AN+++YA+A+++F A ++
Sbjct: 133 WAATQISHLSLIPELVSCEHEKVELTAYRYAFTVIANITVYAVAWLLFHFQEGDDPAVMD 192
Query: 200 NQ-------YRWIAYSSIFIGCCFVGIFLSRTEE 226
N +R ++ + IG F +F T E
Sbjct: 193 NLGSVDIPVFRNLSLIVVGIGAVFTFLFHLGTRE 226
|
|
| WB|WBGene00017530 F16H11.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 104/344 (30%), Positives = 176/344 (51%)
Query: 84 DRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
D+ G WH C C+ ++ LKV + + F +F GWA+
Sbjct: 105 DKIGRRMSWHLIGTVLVSLSFPMIFNKCFLCKSTTSEWLKV--LWFVPFIMVFQFGWASV 162
Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHA---DLE 199
Q++H++++ ++ SR + S R AFT++ANLS+Y A+A+++ S ST T D
Sbjct: 163 QISHLALIPELSSVPASRATMNSLRYAFTVIANLSVYFALAWLL-SESTGHTSIGPWDFS 221
Query: 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEP-RLKMGLRGNSHA-------RISWAYWFKKIL 251
+ +R + + +G +F + T EP + R NS + R+ W WF +
Sbjct: 222 H-FRLAGWLVVVLGITVAFVFYAFTREPTNYRRFSRLNSFSSDASELVRMHWTSWFGHVQ 280
Query: 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAW 311
+YQ+AL+YML+RL +N+SQ Y FY+ + A++P + Y+ SF VS++
Sbjct: 281 FYQIALLYMLSRLYINISQVYFPFYITMTQNYEKKYVAILPMVAYLSSFSVSMVNSLPVV 340
Query: 312 TGQRLKAYYSAG---GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQN 368
+ K YS G G+L C +L LP +Y LA+ +GIA A++++T +S+
Sbjct: 341 SKLSKKILYSFGLASGML--SCAVMMLDLP---GWKIYALAVGIGIAQAILLITSLSITA 395
Query: 369 VLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ----SYQSMSP 408
L+ ++ AFV G +SF DK+S GIA +++ +Y ++ P
Sbjct: 396 DLINKNTESGAFVYGAMSFFDKLSNGIAYQLIELWTPAYDALKP 439
|
|
| TIGR_CMR|CPS_3708 CPS_3708 "sugar:cation symporter family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 89/387 (22%), Positives = 162/387 (41%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-- 85
YG G ++I +LLLF TD+ GLSP + L ++ D +G L D+
Sbjct: 10 YGLGDTASNIIFQTVMMFLLLFYTDVVGLSPAVVGTMFLFVRLIDAVTDPIMGNLADKTR 69
Query: 86 --FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
+G F+ + P T KV ++ + + + + A
Sbjct: 70 TKWGQFRPYLLWLALPFALISILAFTT--PDL---TGNNKV-IYAFVTYTLLM-IAYTAI 122
Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203
+ + + IT ++ RV + S R F M+ + + A A + + QY
Sbjct: 123 NIPYCGLGGVITADAKERVTVQSYRFVFGMLGGV-IVAGATMPMVEWFGQGDTAKGYQYT 181
Query: 204 WIAYSSIFIGC---CFVGIFLSRTEEPRLK-MGLRGNSHARISWAYWFKKILYYQVALVY 259
+A SS+ + CF+G R + P + ++ N + W +IL +A Y
Sbjct: 182 MVAMSSLGVVLFLLCFLGT-KERVKPPENQDSSMKENLQSLWKNDQW--RILC--IASFY 236
Query: 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII---YICSFIVSILLQEMAWTGQRL 316
+LT V+ ++ LA Y + +G+ + L+ + + + S I + Q +A ++
Sbjct: 237 LLTGQVLRLT---LAVYYVKYF-LGR--EDLITSFLTLGVVASMIGCAVAQPLAKRVCKI 290
Query: 317 KAYYSAGGVLWVFCGAGILILPMNMS-AFMYVLA--IFVGIANALM---MVTGISMQNVL 370
KAY + + V C A LI P + AF+ ++ F+ +A+ L+ M I +
Sbjct: 291 KAYIALQSLSAVICLASFLISPNQIILAFVAFISWKFFLDMASPLLWAKMADTIDYGHKK 350
Query: 371 VGEDLSGCAFVCGTLSFLDKMSCGIAV 397
G ++G + G + F+ KM GIA+
Sbjct: 351 TGIRVTGLVY-SGVIFFI-KM--GIAI 373
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.328 0.137 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 475 458 0.00095 118 3 11 22 0.42 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 620 (66 KB)
Total size of DFA: 267 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.23u 0.10s 34.33t Elapsed: 00:00:02
Total cpu time: 34.23u 0.10s 34.33t Elapsed: 00:00:02
Start: Mon May 20 22:27:45 2013 End: Mon May 20 22:27:47 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3U481 | MFS12_MOUSE | No assigned EC number | 0.3247 | 0.8210 | 0.8193 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | fgenesh4_pg.C_LG_IX001320 | hypothetical protein (442 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 475 | |||
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 1e-49 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 2e-17 | |
| TIGR00792 | 437 | TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron | 1e-08 | |
| PRK09848 | 448 | PRK09848, PRK09848, glucuronide transporter; Provi | 2e-07 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 1e-49
Identities = 94/454 (20%), Positives = 160/454 (35%), Gaps = 51/454 (11%)
Query: 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
+ YG G + N+I A TYLL F TD+ GLS + L +I D F +G +ID
Sbjct: 2 IGYGLGDLGNNIIYALLSTYLLYFYTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDR 61
Query: 85 ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWA 141
R+G F+ W G++ +A+S +F P + T+ L I+Y + + +
Sbjct: 62 TRTRWGKFRPWLLIGAIPLAISLVLLFA--TPFGLSMTAKLIYAFITYI----LLGLAYT 115
Query: 142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201
+ + S++ +T + R L S R + L + IA + ++ +
Sbjct: 116 FVNIPYWSLIPVLTRDPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGG---NGAKG 172
Query: 202 YRWIAYSSIFIGCCFVGIFLSRT-EEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYM 260
Y A + I + T E + + R + FK + L+Y+
Sbjct: 173 YFLAALIIAILAVVGFLICFAGTKERVSVPPEQKEKVSLRDMFKALFKNRPLLILLLLYL 232
Query: 261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KA 318
L L + V L +Y L L+ + W +R K
Sbjct: 233 LNALAMAVRNGLLLYYFTYVLGNAGLFSVLLLIGTIAAILGAPL----WPWLAKRFGKKR 288
Query: 319 YYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQN--VLVGEDLS 376
+ G +L + LP VL + GI L + +M V GE +
Sbjct: 289 TFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKT 348
Query: 377 G---CAFVCGTLSFLDKMSCGIAVYV------LQSYQSMSPTVLDNNSSITSLTVLDNNS 427
G SF DK+ + + Y + N +
Sbjct: 349 GKRREGITFSLYSFADKLGGALGGAIVGLLLAFAGYVA-------------------NAT 389
Query: 428 LISTSYISVTRFGLGLIPAICSLVSVAVTFTMKL 461
S + +S R LIPA+ +L+++ + L
Sbjct: 390 AQSAAALSGIRLLFTLIPAVLALLALLILRFYPL 423
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-17
Identities = 86/468 (18%), Positives = 164/468 (35%), Gaps = 53/468 (11%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
YG G ++ YLL F TD+ GLS A + L +I D +G ++D
Sbjct: 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTR 76
Query: 85 -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
R+G F+ W G++ A+ +F I ++ + I V + +G+
Sbjct: 77 SRWGRFRPWLLWGAIPFAIVAVLLF-------ITPDFSMTGKLIYALVTYMLLGLGYTLV 129
Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203
+ + ++ IT + R LTS R F + L L A+ F L Y+
Sbjct: 130 NIPYGALGPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGGDKAL--GYQ 186
Query: 204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQVALVY 259
A IG + +E ++ + ++ F I + L+
Sbjct: 187 GTALVLGVIGVILLLFCFFNVKERVVETQ-PTKTGVKLKLKDSFLLIFKNRPLLLLLLMN 245
Query: 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--K 317
+L + N+ + + +YV L + L+ + ++ ++L ++ K
Sbjct: 246 LLLFIAFNIRGSIMVYYVTYVLGDPELFAYLL-LLASGAGLLIGLIL--WPRLVKKFGKK 302
Query: 318 AYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV------ 371
+ G +L + P + V I G+ + +M V
Sbjct: 303 KLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK 362
Query: 372 -GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS---PTVLDNNSSITSLTVLDNNS 427
G G + ++F K+ +A ++ P V ++S
Sbjct: 363 TGVRREGIVY--SGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQSASA---------- 410
Query: 428 LISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 475
+ RF ++PA+ L++ + F KL+ K ++E L Q
Sbjct: 411 ------LFGIRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELEQ 452
|
Length = 467 |
| >gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 78/342 (22%), Positives = 127/342 (37%), Gaps = 38/342 (11%)
Query: 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
YG G N+ A TYLL F TD+ GLS + L +I D +G ++D
Sbjct: 4 YGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTR 63
Query: 85 -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
R+G F+ W +L+ S+ +L +T V+A I +
Sbjct: 64 TRWGKFRPW-----LLIGAIPFSIVL------VLLFTTPDFSATGKLVYAYITYILLGLF 112
Query: 144 ----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199
+ + S+V ITL+ R L++ R A L +A IV + + D +
Sbjct: 113 YSFVNIPYWSLVPAITLDPRERESLSTFRRFG---ATLGGLLVAVIVLPLVSYFGGGDDK 169
Query: 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQV 255
+ A IG + I T+E ++ N ++S FK + +
Sbjct: 170 FGWFMFALVLALIGVVSLIICFFGTKERYSEI--PKNIEKKLSLKQIFKALFKNDQLLIL 227
Query: 256 ALVYMLTRLVVNV---SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWT 312
L Y+ L N+ Q Y YV+ D + + + +I I +L +
Sbjct: 228 CLAYLFYNLAFNIKNGVQVYYFTYVLGDPEL----FSYMGSIAIGAGLIGVLLFPRLVKK 283
Query: 313 GQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI 354
R K ++ G +L V G I + + VL I G
Sbjct: 284 FGR-KILFAGGILLMV-LGYLIFFFAGSNLPLILVLIILAGF 323
|
The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437 |
| >gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 55/281 (19%), Positives = 112/281 (39%), Gaps = 35/281 (12%)
Query: 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
Q + +++ Y G + N+ A +LL + TD+ G+ A ++L ++ D FA +
Sbjct: 3 QQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADV 62
Query: 78 FIGELID----RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133
F G ++D R+G F+ + G+ + + VF +P +S + ++Y
Sbjct: 63 FAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF--WVPTDWSHSSKVVYAYLTY---- 116
Query: 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
+ ++ + + S+ +T SR L + R + A+L+ +AF++
Sbjct: 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAAR---GIAASLTFVCLAFLIGPSIKNS 173
Query: 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEE--------PRLKMG---LRGNSHARIS 242
+ ++ + Y + G I T E P LK+ L+ N
Sbjct: 174 SPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNR----- 228
Query: 243 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 283
+ AL +++ V+ S + YV+ND +
Sbjct: 229 -----PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL 264
|
Length = 448 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 100.0 | |
| PRK11462 | 460 | putative transporter; Provisional | 100.0 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 100.0 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 100.0 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 100.0 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 100.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.98 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.96 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.94 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.94 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.94 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.93 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.93 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.93 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.93 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.93 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.93 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.92 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.92 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.92 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.92 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.91 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.91 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.9 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.9 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.89 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.89 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.88 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.88 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.88 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.88 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 99.88 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.86 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.83 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.83 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.82 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.82 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.81 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.81 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.79 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.77 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.77 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.76 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.74 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.74 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.7 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.7 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.68 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.66 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.65 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.58 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.55 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.54 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.5 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.45 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.42 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.42 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.38 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.35 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.33 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.26 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.16 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.14 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.14 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.13 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.12 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.1 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.07 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.07 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.06 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.06 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.06 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.05 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.05 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.04 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.04 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.03 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.03 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.0 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.99 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.99 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.99 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.99 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.96 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.96 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.92 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.9 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.9 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.89 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.88 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.88 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.88 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.88 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.86 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.86 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.83 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.82 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.82 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.8 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.8 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.8 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.79 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.79 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.79 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.79 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.79 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.78 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.78 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.77 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.77 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.76 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.76 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.75 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.75 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.75 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.75 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.74 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.73 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.73 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.72 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.72 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.71 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.71 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.71 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.7 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.69 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.68 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.67 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.67 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.66 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.66 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.65 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.64 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.62 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.62 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.61 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.6 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.59 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.59 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.57 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.56 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.56 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.53 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.51 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.51 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.47 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.47 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.47 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.46 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.45 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.43 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.41 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.4 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.35 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.34 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.31 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.29 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.28 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.26 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.24 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.16 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.13 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.1 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.07 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.06 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.01 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.99 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.9 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.84 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.83 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.81 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.81 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.79 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.78 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.75 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.73 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.72 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.72 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.61 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.59 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.54 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.52 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.47 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.43 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.33 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.17 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.14 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.06 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.01 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.92 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.84 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.79 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.78 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.54 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.37 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.15 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.06 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 95.98 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.53 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.26 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.11 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 95.03 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.41 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.13 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 92.3 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.01 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 91.72 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 90.79 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 90.59 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 90.1 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 89.77 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 88.77 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 87.83 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 87.37 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 86.3 |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-54 Score=415.12 Aligned_cols=427 Identities=20% Similarity=0.270 Sum_probs=364.5
Q ss_pred CCCCCccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc----cCCcchh
Q 011925 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (475)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr----~Grr~~~ 92 (475)
++|++.+++++||+|+++.++.+..+..||++||+|+ |+|+..+|.++.+.+++|++.||++|.++|| |||||||
T Consensus 6 ~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~ 85 (467)
T COG2211 6 SKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPW 85 (467)
T ss_pred cCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHH
Confidence 5789999999999999999999999999999999999 9999999999999999999999999999996 9999999
Q ss_pred HHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHH
Q 011925 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (475)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~ 172 (475)
++.+.++.++...+.|. .| ..+...+..+..+.|. +.+++++.+++|+.++.+++++|++||.++.++|+.+.
T Consensus 86 lL~g~ip~~i~~~l~F~--~p-~~~~~~k~~ya~vtY~----l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~ 158 (467)
T COG2211 86 LLWGAIPFAIVAVLLFI--TP-DFSMTGKLIYALVTYM----LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFA 158 (467)
T ss_pred HHHHhHHHHHHHHHHHc--CC-CcccCcchHHHHHHHH----HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999988884 34 2444567777777777 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-C--CCcchHHHHHHHHhc
Q 011925 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-R--GNSHARISWAYWFKK 249 (475)
Q Consensus 173 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~--~~~~~~~~~~~l~~~ 249 (475)
.+|..+...+.+|++..+++. |...||+....+.++++++..+++++.+||+..++++ + .+.+.++.+..++||
T Consensus 159 ~~g~~l~~~~~~plv~~~g~~---~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~N 235 (467)
T COG2211 159 SLGGLLVAVLFPPLVKLFGGG---DKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKN 235 (467)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHcc
Confidence 999999999999999887542 2367999999999999999999999999998754332 2 345667777889999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 011925 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV 328 (475)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~ 328 (475)
|+++..++.+++...+.....+...+|++..+|.+.............+.+++.++.+++ +|+++ |+++.++.++.+
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gk--k~~~~~~~~~~~ 313 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGK--KKLFLIGLLLLA 313 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhch--HHHHHHHHHHHH
Confidence 999999888888888888888888888888888877666555555555566656666665 44444 788889999999
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHH-------HHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 329 FCGAGILILPMNMSAFMYVLAIFVGIANALM-------MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~-------~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
++.+.+++.+.++.+..++...+.++|.+.. .++..|+.++++++|++| +.+|.+++.+|+|.++++.+.+
T Consensus 314 i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG--i~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 314 VGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG--IVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888666666666667777777753 468889999999999999 9999999999999999987665
Q ss_pred H----hcccCCccccCCCcccccccccCCCCCcHHHHHHHHHHHhhHhHHHHHHHHHHHhhccCCccChhhhHhhhcC
Q 011925 402 S----YQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 475 (475)
Q Consensus 402 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 475 (475)
+ +||.++. +.|+++++.+++..+.++|+++.+++++...+||++|++|++++|||.|
T Consensus 392 ~~L~~~Gyv~~~-----------------~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L~~~~~~~I~~eL~~ 452 (467)
T COG2211 392 WILGAIGYVPNV-----------------SAQSASALFGIRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELEQ 452 (467)
T ss_pred HHHHHcCCCCCc-----------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5 4544432 2589999999999999999999999999999999999999999999875
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=380.22 Aligned_cols=425 Identities=16% Similarity=0.248 Sum_probs=316.4
Q ss_pred CCCCCccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc----cCCcchh
Q 011925 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (475)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr----~Grr~~~ 92 (475)
+++++++++++|++|+++.+..+.++..|+++||+|. |+++..+|.++.+.+++|++.||++|+++|| +||||||
T Consensus 3 ~~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~ 82 (460)
T PRK11462 3 SEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPW 82 (460)
T ss_pred CCcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchh
Confidence 3678999999999999999999999999999999999 9999999999999999999999999999996 8999999
Q ss_pred HHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHH
Q 011925 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (475)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~ 172 (475)
++.+.++++++..++|. .| ..+......+..+.|. ++.+++++.++|+.++.+++++|+|||+++++++..+.
T Consensus 83 il~g~i~~~i~~~llf~--~p-~~s~~~~~~y~~~~~~----~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~ 155 (460)
T PRK11462 83 VLFGALPFGIVCVLAYS--TP-DLSMNGKMIYAAITYT----LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLA 155 (460)
T ss_pred HhHHHHHHHHHHHHHHh--CC-CCCcchHHHHHHHHHH----HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999888883 35 2333333344444444 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhH
Q 011925 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252 (475)
Q Consensus 173 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (475)
.+|..+++.+..|++..+++ .+...+|+....+.+++++++..+++...||+++++ +++.+.++.++..+|||++
T Consensus 156 ~iG~~~~~~~~~plv~~~g~---~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~--~~~~~~~~~l~~~~~Nk~~ 230 (460)
T PRK11462 156 TAGGMLSTVLMMPLVNLIGG---DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP--PTTTSMREDLRDIWQNDQW 230 (460)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC--ccCCCHHHHHHHHhCChHH
Confidence 99998888888888776542 123468998888888888888777777788864332 2344567888999999998
Q ss_pred HHHHHHHHHHHHH---HHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 011925 253 YQVALVYMLTRLV---VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV 328 (475)
Q Consensus 253 ~~~~~~~~~~~~~---~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~ 328 (475)
+.+....++.... ......|+..|.. |... ..+.+.....++.+++.++.+++ +|+++ |+....+.....
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~~---g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gk--k~~~~~~~~~~~ 304 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTWIL---GTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCK--VTIFWWTNALLA 304 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhc---CChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHH
Confidence 8776555444443 3345566666653 3222 22334445556677777776665 33333 444443333333
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHH-------HHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 329 FCGAGILILPMNMSAFMYVLAIFVGIANAL-------MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~-------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
+...++.+.+..+.+..++..++.|++.+. ..+++.++.+.++++|++| ..++.+++.+|+|.++|+.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g--~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 305 VISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG--ISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 322333344433333333344445555433 3467788888889999999 8889999999999999987766
Q ss_pred HhcccCCccccCCCcccccccccCCCCCcHHHHHHHHHHHhhHhHHHHHHHHHHH-hhccCCccChhhhHhhhcC
Q 011925 402 SYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVT-FTMKLHTPYSKPLVEPLLQ 475 (475)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 475 (475)
.+....+++. ++..|+++++.+++..+.++|+++.+++.+++ ++||+||++|+|+++||++
T Consensus 383 ~iL~~~Gy~~-------------~~~~q~~~~~~~i~~~~~~~P~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~ 444 (460)
T PRK11462 383 WMLAYGGYDA-------------AEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQ 444 (460)
T ss_pred HHHHHcCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5432223221 12458899999999999999999999998887 5789999999999999853
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=377.24 Aligned_cols=429 Identities=17% Similarity=0.198 Sum_probs=320.0
Q ss_pred CCCCCccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc----cCCcchh
Q 011925 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (475)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr----~Grr~~~ 92 (475)
++|++++++++|++|+++.+..+..+..|+++|++|. |+|+.++|.++++.+++|++.||++|+++|| +||||||
T Consensus 3 ~~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~ 82 (444)
T PRK09669 3 TSQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPY 82 (444)
T ss_pred CCcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchh
Confidence 4678999999999999999999999999999999998 9999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHH
Q 011925 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (475)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~ 172 (475)
++.+.++.+++..+++. .| ..+.....++..+.+. +.+.++++.++|+.++.+++++|++||+++.+++..+.
T Consensus 83 il~~~~~~~i~~~l~f~--~p-~~~~~~~~~~~~~~~~----l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~ 155 (444)
T PRK09669 83 LLWFAIPFGVVCLLTFY--TP-DFGATGKIIYACVTYI----LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALS 155 (444)
T ss_pred HHHHHHHHHHHHHHHHh--CC-CCCcchHHHHHHHHHH----HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHH
Confidence 99998888888776663 45 2222223344434443 67888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhH
Q 011925 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252 (475)
Q Consensus 173 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (475)
.+|..+++.+..++...++.. +...+|+..+.+.+++++++.+++++..||+++++ ++++.+.++.+++++|||++
T Consensus 156 ~~G~~i~~~~~~pl~~~~~~~---~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~n~~~ 231 (444)
T PRK09669 156 FIGGLIVSVIALPLVDILGKG---DEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-VDNSSSVWKDLKLLLGNSQW 231 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-CcCCCCHHHHHHHHhCCchH
Confidence 999999888888887765421 24568999988888888777777777788864433 23344567788999999998
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHH
Q 011925 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 331 (475)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~ 331 (475)
+.+....++............++|..+..+.+. ..+.+.....+..+++.++.+++ +|.++ |+....+....+++.
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk--~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 232 RIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGKFDR--VRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHH
Confidence 888776665555444333333444443333222 22233333345556666665554 44433 555555655544433
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHH-------hHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 332 AGILILPMNMSAFMYVLAIFVGIANALMMV-------TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~-------~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
..+.+.+.++.+.+++..++.|++.+...+ +..++.+.++++|++| ..+|.+++..|+|.++|+.+.+.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g--~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 309 ALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDG--LVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcch--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433344445565556666778888776544 4455556667888888 9999999999999999987766544
Q ss_pred ccCCccccCCCcccccccccCCCCCcHHHHHHHHHHHhhHhHHHHHHHHHHHhhccCCccChhhhHhhhcC
Q 011925 405 SMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 475 (475)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 475 (475)
...+++. +.++|+++++.+++..+..+|+++.+++++++++||++||+|+|+++||.+
T Consensus 387 ~~~Gy~~-------------~~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~ 444 (444)
T PRK09669 387 AWVDYVG-------------GAAVQSASVLTTINLLFTVIPGVLFAGMAIILNFYKLNDARVEAIAQELVK 444 (444)
T ss_pred HHcCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhC
Confidence 3333321 124689999999999999999999999999999999999999999999864
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=373.13 Aligned_cols=426 Identities=15% Similarity=0.203 Sum_probs=317.3
Q ss_pred CCCccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhh----ccCCcchhHH
Q 011925 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHG 94 (475)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~D----r~Grr~~~l~ 94 (475)
|++.+++++|++|+++.++.+.++.+|+++|++|+ |+++..+|.++++.+++|++.||++|+++| ||||||||++
T Consensus 2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il 81 (473)
T PRK10429 2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL 81 (473)
T ss_pred CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence 56889999999999999999999999999999998 999999999999999999999999999999 5799999999
Q ss_pred HHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHH
Q 011925 95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 174 (475)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~ 174 (475)
.+.+++++++.++|. .| ..+.....++..+.+. ++.+++++.++|+.++.+++++|++||.++.+++..+..+
T Consensus 82 ~g~i~~~i~~~llf~--~p-~~~~~~~~~~~~~~~~----l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i 154 (473)
T PRK10429 82 IGTLANSVVLFLLFS--AH-LFEGTAQYVFVCVTYI----LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL 154 (473)
T ss_pred hhhHHHHHHHHHHHc--CC-CCCccHHHHHHHHHHH----HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999998777773 23 1222222333333333 6789999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc----cCCCcchHHHHHHHHhch
Q 011925 175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LRGNSHARISWAYWFKKI 250 (475)
Q Consensus 175 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~l~~~~ 250 (475)
|..+.+.+..+++..++.. +...+|+....+.+++.+++.++.++.+||+..+++ ++++.+.++.++.++|||
T Consensus 155 g~~~~~~~~~~~~~~~g~~---~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 231 (473)
T PRK10429 155 AGFVTAGFTLPFVNYVGGG---DRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKND 231 (473)
T ss_pred HHHHHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCH
Confidence 8777776666666554321 234588988888888777777777777888643211 123445678888889999
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHH
Q 011925 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 329 (475)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~ 329 (475)
+++.+.+..++.+........+.++|.+...+ ++...+.+.....++.+++.++.+++ +|+++ |+.+.++..+.++
T Consensus 232 ~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk--k~~~~~~~~~~~~ 308 (473)
T PRK10429 232 QLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSR--RILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHH
Confidence 98888777777766666666666655554444 33333444444445666666665554 33333 5666666655554
Q ss_pred HHHHHhh---cCCchHHHHHHHHHHHHHHHHHHH-------HhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHH
Q 011925 330 CGAGILI---LPMNMSAFMYVLAIFVGIANALMM-------VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (475)
Q Consensus 330 ~~~~~~~---~~~~~~~~~~~~~~l~g~g~~~~~-------~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l 399 (475)
+.+.+.+ .+.++.+.+++..++.+++.+... ++..++.+.++++|++| .++|.+++.+|+|.++++.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G--~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 309 SCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCES--IAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchh--HHHHHHHHHHHHHHHHHHHH
Confidence 4433322 233445555555666777666544 45556666778999999 99999999999999999887
Q ss_pred HHHhcccCCccccCCCcccccccccCCCCCcHHHHHHHHHHHhhHhHHHHHHHHHHH-hhccCCccChhhhHhhhc
Q 011925 400 LQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVT-FTMKLHTPYSKPLVEPLL 474 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 474 (475)
.+.+....+++ .+..|+++++.++++.+.++|+++.+++++++ ++||+||++|+|+++||+
T Consensus 387 ~g~~l~~~Gy~--------------~~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~ 448 (473)
T PRK10429 387 IGVVLGLIGYV--------------PNVEQSAQTLLGMQFIMIGLPTLFFMITLVLYFRYYRLNGDFLRRIQIHLL 448 (473)
T ss_pred HHHHHHHcCCC--------------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCCHHHHHHHHHHHH
Confidence 76654333322 12468999999999999999999999988876 689999999999999885
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=358.74 Aligned_cols=412 Identities=24% Similarity=0.334 Sum_probs=331.9
Q ss_pred ceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhh----ccCCcchhHHHHHHH
Q 011925 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL 99 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~D----r~Grr~~~l~~~~~~ 99 (475)
++..|++|+++.++.+.....|+++|++|. |+++..+|.+..+.+++|++.||++|+++| |+||||||++.+.++
T Consensus 2 ~~~ay~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~ 81 (428)
T PF13347_consen 2 KKLAYGIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL 81 (428)
T ss_pred cEEEeeHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH
Confidence 356799999999999999999999999998 999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHHhcCCcc-CCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHH
Q 011925 100 VAVSFSSVFGGCM-PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (475)
Q Consensus 100 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (475)
.+++..+++. . |...+...+..+..+.+. ++.++++..++|+.++.+|+++|++||.+..+++..+..+|.++
T Consensus 82 ~~~~~~llf~--~~p~~~~~~~~~~~~~~~~~----l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l 155 (428)
T PF13347_consen 82 LALSFFLLFS--PPPAGLSFTAKLVWLFVFYI----LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLL 155 (428)
T ss_pred HHHHHHHhhc--cccchhhhhhHHHHHHHHHH----HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHH
Confidence 9999988884 3 422332333334344444 67999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ccccCCCcchHHHHHHHHhchhHHHHHH
Q 011925 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL-KMGLRGNSHARISWAYWFKKILYYQVAL 257 (475)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 257 (475)
...+.+++...++.. +...+|++...+.++++++..++.++.+||+++ .++++++.+.++.+++++|||+++.+.+
T Consensus 156 ~~~~~~~l~~~~g~~---~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~ 232 (428)
T PF13347_consen 156 ASFLAPILVSWFGGG---DTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLL 232 (428)
T ss_pred HHHHhhhhhhhhccC---ccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHH
Confidence 788887877665421 112489999999999999999998899999332 2333455567888999999999999888
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 011925 258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI 336 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~ 336 (475)
..++............++|.++..|.+. ..+.+.....++.+++.++.+++ +|+++ |+.+..+..+.+++.++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk--~~~~~~~~~~~~~~~~~~~~ 309 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGK--KKVYIIGLLLAALGFLLLFF 309 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccc--eeehhhhHHHHHHHHHHHHH
Confidence 8888888877777777778777777663 34455555566777777776665 33333 67888888888888777777
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHH-------HhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCCc
Q 011925 337 LPMNMSAFMYVLAIFVGIANALMM-------VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPT 409 (475)
Q Consensus 337 ~~~~~~~~~~~~~~l~g~g~~~~~-------~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~~ 409 (475)
.+.++.+.+++...+.|++.+..+ ++..++.++++++|++| ..+|++++..|++.++++.+.+.+....++
T Consensus 310 ~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g--~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 310 LGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG--MYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH--HHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 654577777888889999888754 46677777788999999 999999999999999998877665433333
Q ss_pred cccCCCcccccccccCCCCCcHHHHHHHHHHHhhHhHHHHHHHHHHHhhccCCc
Q 011925 410 VLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHT 463 (475)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (475)
+. +.+.|+++++.+++..+..+|+++.+++++++++||+||
T Consensus 388 ~~-------------~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l~~ 428 (428)
T PF13347_consen 388 DA-------------NAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPLTR 428 (428)
T ss_pred CC-------------CcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 21 113689999999999999999999999999999999986
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=348.38 Aligned_cols=428 Identities=17% Similarity=0.214 Sum_probs=309.2
Q ss_pred CCCCCccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc----cCCcchh
Q 011925 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (475)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr----~Grr~~~ 92 (475)
.+|++++++++|++|++++++..++..+|++.|++|. |+++.++|.++++.++++++.+|++|+++|| +||||||
T Consensus 2 ~~~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~ 81 (448)
T PRK09848 2 NQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF 81 (448)
T ss_pred CCcccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence 5788999999999999999999999999999999998 9999999999999999999999999999998 5999999
Q ss_pred HHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHH
Q 011925 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (475)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~ 172 (475)
++.+.++..+...+++. .|...+...+.++.+..+. +.++++++.++|+.++..++++|++||.+..+++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~ 155 (448)
T PRK09848 82 LLFGTAPLMIFSVLVFW--VPTDWSHSSKVVYAYLTYM----GLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAA 155 (448)
T ss_pred HHHHHHHHHHHHHHHHh--CcCCCCcchHHHHHHHHHH----HHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence 88888777766655552 2311211222223233333 67888999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhH
Q 011925 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252 (475)
Q Consensus 173 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (475)
.++........+|++..... ++...+|.....+.++++++..++.+...||+.++ ++++.+.++.+++++|||++
T Consensus 156 ~~~~~~~~~~~~p~i~~~~g---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~~~l~~n~~f 230 (448)
T PRK09848 156 SLTFVCLAFLIGPSIKNSSP---EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR--IVAQPSLKISLQTLKRNRPL 230 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC--CccCCCHHHHHHHHhCCchH
Confidence 76655444444555443211 11122343333444555555555666667775432 22334567778899999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHH
Q 011925 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFC 330 (475)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~ 330 (475)
+...+..++............|.|+++..|.++...++......++.+++.++.+++ .+|+ |+.+.++..+.+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~r~g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGM---VARIGKKNTFLIGALLGTCG 307 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCcHHHHHHHHHHHHHH
Confidence 888877777777777777778888888778765433333222234445555555443 4444 67777787777777
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHHHHHHh-------HhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 331 GAGILILPMNMSAFMYVLAIFVGIANALMMVT-------GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~-------~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
.+.+.+.+..+.+..++..++.++|.+...+. ..++.+.++++|++| .++|++++.+|+|.++|+.+.+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G--~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 308 YLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG--LTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655544345555555667788887776543 334445556778888 999999999999999998877655
Q ss_pred cccCCccccCCCcccccccccCCCCCcHHHHHHHHHHHhhHhHHHHHHHHHHHhhccCCccChhhhHhhhcC
Q 011925 404 QSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 475 (475)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 475 (475)
....+++ .+..|++++..+++..+.++|+++.+++.+++++||++||+++|+++||++
T Consensus 386 l~~~G~~--------------~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~~~~~l~~ 443 (448)
T PRK09848 386 LGLSGYI--------------ANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDN 443 (448)
T ss_pred HHHcCCC--------------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeCCHHHHHHHHHHHHH
Confidence 4322321 223489999999999999999999999999999999999999999998863
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=347.11 Aligned_cols=420 Identities=21% Similarity=0.284 Sum_probs=314.4
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc----cCCcchhHHHHHHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVLV 100 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr----~Grr~~~l~~~~~~~ 100 (475)
+++|++|+++.+..+.+..+|+++|++|. |+|+.++|+++++.++++++.+|++|+++|| +||||||++.+.++.
T Consensus 1 ~~~yg~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~ 80 (437)
T TIGR00792 1 KLSYGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF 80 (437)
T ss_pred CeeeecchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH
Confidence 47899999999999999999999999998 9999999999999999999999999999997 899999999998888
Q ss_pred HHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHH
Q 011925 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180 (475)
Q Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~ 180 (475)
+++..+++. .|. .......++....+ .+.++++++.++|+.++.+++++|++||+++.++++.+..+|..+++
T Consensus 81 ~i~~~~~~~--~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~ 153 (437)
T TIGR00792 81 SIVLVLLFT--TPD-FSATGKLVYAYITY----ILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVA 153 (437)
T ss_pred HHHHHHHHh--CCC-CCcchHHHHHHHHH----HHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766663 331 11111122222222 36788899999999999999998899999999999999999988888
Q ss_pred HHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc--CCCcchHHHHHHHHhchhHHHHHHH
Q 011925 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALV 258 (475)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (475)
.+..++...++.. +...+|++.+.+.++++++..++.++..||++++.++ +++.+.++.+++++|||+++...+.
T Consensus 154 ~~~~~l~~~~~~~---~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 154 VIVLPLVSYFGGG---DDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHhCCC---cccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 8877777654321 1356899999998888888877777778886532111 2233467788899999998888777
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 011925 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~ 337 (475)
.++..........+.+.|.++..+ ++...+.+.....++.+++.++.+++ +|+++ |+.+.++..+.+++.+...+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGR--KILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHc
Confidence 777766666655556666655555 33344445555566777777776654 34443 566777777766666555544
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhHhhh-------hhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCCcc
Q 011925 338 PMNMSAFMYVLAIFVGIANALMMVTGISM-------QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV 410 (475)
Q Consensus 338 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~-------~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~~~ 410 (475)
+ ++.+...+..++.+++.+...+...++ .+.++++|++| .++|+.++..++|.++++.+.+.+....++.
T Consensus 308 ~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 308 G-SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG--LVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3 344455556667777777655443333 34456678888 9999999999999999988877654333321
Q ss_pred ccCCCcccccccccCCCCCcHHHHHHHHHHHhhHhHHHHHHHHHHHh-hccCCccChhhhHhhhcC
Q 011925 411 LDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTF-TMKLHTPYSKPLVEPLLQ 475 (475)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 475 (475)
....|++++..+++..+..+|+++.+++++++. +||++||+|+|+++||.+
T Consensus 385 --------------~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~l~~~~~~~i~~~l~~ 436 (437)
T TIGR00792 385 --------------ANAAQSPITLNGIKILMFAVPALFLLLAAIIIGRFYKLTEKKHAEIVEELEQ 436 (437)
T ss_pred --------------cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeCcHHHHHHHHHHHhc
Confidence 123578899999999999999999999999986 999999999999999864
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-29 Score=255.34 Aligned_cols=404 Identities=13% Similarity=0.056 Sum_probs=268.6
Q ss_pred ceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHH
Q 011925 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~ 104 (475)
..+...++.+.........++.+|.+.+|.|.|+.+.|++.+.+.+...+..|+.|+++||+||||.++ .+....+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-~~~~~~~~~~ 89 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFF-TAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHH
Confidence 445566677777888888888999999988999999999999999999999999999999999999854 4444444443
Q ss_pred HHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHH
Q 011925 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (475)
Q Consensus 105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~ 184 (475)
.... .. .+.... ...+ .+.+++.+...+...+++.+..+ +++|++..+.......+|..+++.+++
T Consensus 90 ~~~~-------~~--~~~~~l-~~~~---~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 90 LFCA-------LS--GTLNEL-LLAR---VLQGVGGAMMVPVGRLTVMKIVP-REQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHH-------Hh--CCHHHH-HHHH---HHHHhhhHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3222 11 112222 2222 26778877777777788888876 778899999888888888888887777
Q ss_pred HHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC---------------------C-------
Q 011925 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG---------------------N------- 236 (475)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~---------------------~------- 236 (475)
.+.+ ..+||+.+.+......+..+......|+.+.++++.+ +
T Consensus 156 ~l~~----------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (471)
T PRK10504 156 LLVE----------YASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPL 225 (471)
T ss_pred HHHh----------hccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchH
Confidence 6653 3589999988766665555554444443221110000 0
Q ss_pred -----------------------cchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhH
Q 011925 237 -----------------------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPA 293 (475)
Q Consensus 237 -----------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~ 293 (475)
++...+ .+++|||+++......++..........+.|.|+++..|.++.+.++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 304 (471)
T PRK10504 226 AIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI 304 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 000112 24788999888777777777776666778888988878888877776665
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc
Q 011925 294 IIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM-NMSAFMYVLAIFVGIANALMMVTGISMQNVLV 371 (475)
Q Consensus 294 ~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 371 (475)
...++.+++.++.+++ +|+++ |+.+..+..+..+...++.+.+. ++.+......++.|++.+...+....+..+..
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 382 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGY--RRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDL 382 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555555555665554 33333 56666666666655444444332 23333334456677888877777777777778
Q ss_pred cCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCCccccCCCcccccccccCCCCCcHHHHHHHHHHHhhHh-HHHHH
Q 011925 372 GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIP-AICSL 450 (475)
Q Consensus 372 ~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 450 (475)
|+|.+| ..+++.++.+++|.++|+.+.+.+....++.+ .+++++..... ..+.+.| +++.+
T Consensus 383 ~~~~~g--~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~~--------------~~~~~~~~~~~--~~~~~~~~~~~~~ 444 (471)
T PRK10504 383 PDNLAS--SGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQH--------------VSVDSGATHTV--FMYTYLCMALIIA 444 (471)
T ss_pred CHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------------cccccccchhH--HHHHHHHHHHHHH
Confidence 888999 88999999999999999887765432222211 01123333333 4444455 66666
Q ss_pred HHHHHHhhccCCccChhhhHhhhc
Q 011925 451 VSVAVTFTMKLHTPYSKPLVEPLL 474 (475)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~l~ 474 (475)
++++++.+++++|++++++++++.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T PRK10504 445 LPALIFARVPNDTHQNVAISRRKR 468 (471)
T ss_pred HHHHHHhcCCcchhhhhccccccc
Confidence 777777888888888888777664
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-27 Score=232.71 Aligned_cols=347 Identities=12% Similarity=0.004 Sum_probs=231.0
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
+|...+..+++.+..........+.+|.+.+|.|.|+.++|++.+.+.+...+.+++.|+++||+||||.+ ..+.+..+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~ 85 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLL-IGLFVLFI 85 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH-HHHHHHHH
Confidence 34445555555555444444455567887777899999999999999999999999999999999999985 44555555
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
++...... ..+.+.. ...+ .+.+++.+...+...+++.+..+ ++||++..++...+..+|..+++.
T Consensus 86 ~~~~~~~~---------~~~~~~l-~~~r---~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~~g~~ig~~ 151 (390)
T PRK03545 86 ASHVLSAL---------AWNFTVL-LISR---IGIAFAHAIFWSITASLAIRVAP-AGKKAQALSLLATGTALAMVLGLP 151 (390)
T ss_pred HHHHHHHH---------hccHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHhCC-hhhhhhHHHHHHHHHHHHHHHHhh
Confidence 55433321 1122222 2222 25666666666777788888886 788999999999988888888877
Q ss_pred HHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHH
Q 011925 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (475)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 261 (475)
++..+.+ ..+||+.+++.++++++..++.++..||+++ ++ ++..++.++.+|||+++......++
T Consensus 152 l~~~l~~----------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (390)
T PRK03545 152 LGRVIGQ----------YLGWRTTFLAIGGGALITLLLLIKLLPLLPS----EH-SGSLKSLPLLFRRPALVSLYLLTVV 216 (390)
T ss_pred HHHHHHH----------HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CC-cchHHHHHHHHhCcHHHHHHHHHHH
Confidence 7766542 4589999999888777666555555555321 11 1223456788999987766555555
Q ss_pred HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcCCc
Q 011925 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMN 340 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-k~~~~~~~~~~~~~~~~~~~~~~~ 340 (475)
..........+.+.|+.+..|.++.+.+.......++.+++.++.+++ .||+ ++.+..+..+...+........ +
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l---~dr~~~~~~~~~~~~~~~~~~~l~~~~-~ 292 (390)
T PRK03545 217 VVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRL---GNRHPSGFLLIAIALLLVCLLLLLPAA-N 292 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHH---hhccchhHHHHHHHHHHHHHHHHHHHh-c
Confidence 555555566788888888788888777777666677778887776554 4444 3344444444444433322222 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 341 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
+.+..++..++.|++.+...+.......+..| +.+| .++|..+...++|.++|+.+.+.+.+
T Consensus 293 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~g~~~G~~~~G~~~~ 354 (390)
T PRK03545 293 SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATD--VAMALFSGIFNIGIGAGALLGNQVSL 354 (390)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566777788776555444444444444 4556 77888888888888888888777653
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=238.24 Aligned_cols=356 Identities=9% Similarity=-0.036 Sum_probs=238.9
Q ss_pred cceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHH
Q 011925 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (475)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~ 103 (475)
++...+.++.+.+.+...+....+|.+.++.+.++.+.|++.+...+...+.+|+.|+++||+||||..+ .+.++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~-~~~~~~~~~ 95 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLIL-LARGTCGLG 95 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEE-ehHHHHHHH
Confidence 3444555567777778888888899998888779999999999999999999999999999999999744 344444443
Q ss_pred HHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHH
Q 011925 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (475)
Q Consensus 104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (475)
...... + ......+.+...+. + .+.+++.+....+..+++++..+ +++|++..++.+....+|..+++.++
T Consensus 96 ~~~~~~---~-~~~~~~~~~~l~~~-~---~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~ 166 (417)
T PRK10489 96 FIGLAL---N-AFLPEPSLLAIYLL-G---LWDGFFGSLGVTALLAATPALVG-RENLMQAGAITMLTVRLGSVISPALG 166 (417)
T ss_pred HHHHHH---H-HHcCCCcHHHHHHH-H---HHHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 322110 0 00011122222222 2 25566666666777888888886 67899999998888888988888887
Q ss_pred HHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC--CCcchHHHHHHHHhchhHHHHHHHHHH
Q 011925 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYML 261 (475)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~ 261 (475)
+.+.. ..+|++.+++.++..++..++. ...||.+++++++ +.++.++.++.++|||.++...+..++
T Consensus 167 g~l~~----------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T PRK10489 167 GLLIA----------AGGVAWNYGLAAAGTFITLLPL-LRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGL 235 (417)
T ss_pred HHHHH----------HHhhHHHHHHHHHHHHHHHHHH-HhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 77653 3478887777655554444433 3344432221111 112334566778888886655544443
Q ss_pred HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCch
Q 011925 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNM 341 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~ 341 (475)
... ......++|.|..+..|.++.+.+++.....++.+++.++.+++.+..++ ++.+..+.+...++...+.+. ++
T Consensus 236 ~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~-~~~l~~~~~~~~~~~~~~~~~--~~ 311 (417)
T PRK10489 236 LTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARP-GLLMLLSTLGSFLAVGLFGLM--PM 311 (417)
T ss_pred HHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCc-chHHHHHHHHHHHHHHHHHcc--ch
Confidence 322 34567789999988789888777777777777788888776655332221 445566666655554444332 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 011925 342 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 406 (475)
Q Consensus 342 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~ 406 (475)
.+...+..++.|++.+...+....+.++..|++.+| ..+|+.+...++|.++|+.+.+.+...
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~l~G~l~~~ 374 (417)
T PRK10489 312 WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLG--RINGLWTAQNVTGDAIGAALLGGLGAM 374 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence 444556667778887777666667778888888888 888998888899999999988877643
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-27 Score=228.24 Aligned_cols=351 Identities=15% Similarity=0.095 Sum_probs=245.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcC
Q 011925 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (475)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~ 109 (475)
..+.+...+...+....+|.|.+|.+.++.++|++.+++.+...+.+|+.|+++||+||||+++....+.........+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 84 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV 84 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777788888899999889999999999999999999999999999999999998554433332222222221
Q ss_pred CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
+ .....+.+...+.. .+.+++.+...++..++++|+.+ ++||++..++.+....+|.++++.+++.+.+
T Consensus 85 ---~--~~~~~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~- 153 (365)
T TIGR00900 85 ---A--LLGGLNIWQVYVLA----GILAIAQAFFTPAYQAMLPDLVP-EEQLTQANSLSQAVRSLFYIVGPGIGGLMYA- 153 (365)
T ss_pred ---H--HcCCCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1 00011222222222 26778888888888999999987 7799999999999999999998888777653
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHHHhh-cccccccccccCCC----cchHHHHHHHHhchhHHHHHHHHHHHHH
Q 011925 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKMGLRGN----SHARISWAYWFKKILYYQVALVYMLTRL 264 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~e~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 264 (475)
..+|++.+++.++..++..++.+. ..||++++++++.+ ++.++.+++++|||.++...+..++...
T Consensus 154 ---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (365)
T TIGR00900 154 ---------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNL 224 (365)
T ss_pred ---------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHH
Confidence 458999888776655544433332 22332221111111 1234556778899988877766666655
Q ss_pred HHHhhh-HHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHH
Q 011925 265 VVNVSQ-AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSA 343 (475)
Q Consensus 265 ~~~~~~-~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (475)
...... .+.|.|.++..|.++.+.+.......++.+++.++.+++.|..+| |+.+..+..+..++.....+.+. +.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~ 302 (365)
T TIGR00900 225 VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKR-MALMTGAIFVIGLAILVVGLTPP-NFP 302 (365)
T ss_pred HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHhhch-hHH
Confidence 555555 788888887788888877877777777778888777665332222 45555555555555444444332 355
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 344 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
..++..++.|++.+...+....+..+..|++++| ...|+.+...+++..+++.+.+.+.
T Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 303 LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLG--RVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778889999988888888888888888888 8999999999999999988887664
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=228.90 Aligned_cols=346 Identities=12% Similarity=0.036 Sum_probs=233.0
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
..+.+.+ ...+........+.++++.|+++. |.|+.++|++.++..+...+.+|+.|+++||+||||. +..+....+
T Consensus 10 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~-l~~~~~~~~ 87 (400)
T PRK11646 10 LGKYFLL-IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM-IVTGMLMRA 87 (400)
T ss_pred ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH-HHHHHHHHH
Confidence 3334443 556666777788889999988776 9999999999999999999999999999999999887 555555555
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
++...... . .+.+...+ .+ .+.+++.+...++..+++.+..+ +|+|+++.++.+....+|..+++.
T Consensus 88 ~~~~~~~~-------~--~~~~~l~~-~~---~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~ 153 (400)
T PRK11646 88 AGFATMAI-------A--HEPWLLWL-SC---ILSGLGGTLFDPPRTALVIKLIR-PHQRGRFFSLLMMQDSAGAVIGAL 153 (400)
T ss_pred HHHHHHHH-------h--ccHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543331 1 12222222 22 25677777777778888888886 788999999999999999999888
Q ss_pred HHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHH
Q 011925 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (475)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 261 (475)
+++.+. ..+|++.+++.+.+.++..++.....||++++ +++++.++.+++++|||+++...+..+.
T Consensus 154 l~g~l~-----------~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (400)
T PRK11646 154 LGSWLL-----------QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVRTPVREGMTRVLRDKRFVTYVLTLTG 219 (400)
T ss_pred HHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc---ccchhhHHHHHHHHcCchHHHHHHHHHH
Confidence 877764 34899998887766655544444445553221 1222345567888999987765544433
Q ss_pred HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHh-hhh--HHHHHHHHHHHHHHHHHHhhcC
Q 011925 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTG-QRL--KAYYSAGGVLWVFCGAGILILP 338 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~--k~~~~~~~~~~~~~~~~~~~~~ 338 (475)
..........++|.|.++..+ ++.+.+.+.....++...+.... .++. ||. ++.+..+..+..++...+...
T Consensus 220 ~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~- 294 (400)
T PRK11646 220 YYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPI---ARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV- 294 (400)
T ss_pred HHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHH---HHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-
Confidence 333333445678999877645 44555555444443333333222 2222 222 344556666655554444333
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 011925 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 406 (475)
Q Consensus 339 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~ 406 (475)
++.+...+...+.+++.+...+....+..+..|++++| .++|++++...+|..+|+.+.+.+.+.
T Consensus 295 -~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 295 -SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARG--SYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccch--hhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 24444445556778888877777778888888999999 889999999999999998887776543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-26 Score=216.35 Aligned_cols=355 Identities=12% Similarity=0.009 Sum_probs=251.5
Q ss_pred CCCCCccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH
Q 011925 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (475)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~ 97 (475)
+++..+...+..+++.|..+....+....+|...+|+|.|....|+++++|.+..+++.|+...+.||+.|||. ++...
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-Ll~~l 85 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-LLGLL 85 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHHHH
Confidence 46667888899999999999999999999999999999999999999999999999999999999999999997 45555
Q ss_pred HHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHH
Q 011925 98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (475)
.++.++-++... .| ++.. ++.-|+ +.++..+.+..-..+...++.| |++|+++.+....+..++.+
T Consensus 86 ~lFi~~n~l~al--Ap-------~f~~-Ll~aR~---~~g~a~G~f~~i~~~~a~~lvp-p~~~~~Aiaiv~~G~tlA~v 151 (394)
T COG2814 86 ALFIVSNLLSAL--AP-------SFAV-LLLARA---LAGLAHGVFWSIAAALAARLVP-PGKRGRALALVFTGLTLATV 151 (394)
T ss_pred HHHHHHHHHHHH--hc-------cHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHcC-ccchhhHHHHHHHHHHHHHH
Confidence 556666443331 12 2333 333332 5566666666666777888887 88999999998888877777
Q ss_pred HHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHH
Q 011925 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVAL 257 (475)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 257 (475)
++..++..+ + +..|||..|+..+.++++..+..+...| +++.+ ++++...++..+++|+|+.+...+
T Consensus 152 ~GvPLGt~i----g------~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~--~~~~~~~~~~~~~l~~p~v~~~l~ 218 (394)
T COG2814 152 LGVPLGTFL----G------QLFGWRATFLAIAVLALLALLLLWKLLP-PSEIS--GSLPGPLRTLLRLLRRPGVLLGLL 218 (394)
T ss_pred HhccHHHHH----H------HHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCC--CCCCcchhHHHHHhcCchHHHHHH
Confidence 765555444 3 3679999999999999999888888888 22111 122222333457889999998888
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 011925 258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~ 337 (475)
..++...+.+...+|+-.++++..|++++..++....++++.++|+.+.+++.+... ++.+.....+.++....+.+.
T Consensus 219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~--~~~l~~~~~l~a~~~l~l~~~ 296 (394)
T COG2814 219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGP--RRALIAALLLLALALLALTFT 296 (394)
T ss_pred HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccccc--hhHHHHHHHHHHHHHHHHHHh
Confidence 888888899999999999999999999988899999999999999999877632233 566666666666666666655
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCcc--chhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 338 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 338 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+ ++.+...+..++.|+..............+.. +++++ .+...+.+|.+..+|..+|+.+.+.++
T Consensus 297 ~-~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g 363 (394)
T COG2814 297 G-ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALG 363 (394)
T ss_pred c-chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 34455455555555555443332222222222 23334 233444444444445555555555543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=230.23 Aligned_cols=338 Identities=12% Similarity=0.011 Sum_probs=201.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchh
Q 011925 44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123 (475)
Q Consensus 44 ~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 123 (475)
...+|...++ |+|+.+.|++.++..+...+.+|+.|+++||+||||. ++.+.+..++...+... .+ ....+..
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~-l~~~~~~~~i~~~~~~~--~~---~~~~~~~ 121 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLFMGF--VP---WATSSIA 121 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh-HHHHHHHHHHHHHHHHh--hh---cccccHH
Confidence 3445554444 9999999999999999999999999999999999997 44555555544433221 11 0011222
Q ss_pred hhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHH-HHHHHHHHHHhhccCCccchHHHH
Q 011925 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS-LYAIAFIVFSVSTAKTHADLENQY 202 (475)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 202 (475)
...+.+. +.+++.+...++......+..+ +++|++..++.+.+..+|..+ ++.+...+. ...+|
T Consensus 122 ~~~~~~~----l~gi~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~----------~~~gw 186 (452)
T PRK11273 122 VMFVLLF----LCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGLPPLLFLLGMA----------WFNDW 186 (452)
T ss_pred HHHHHHH----HHHHHHhccchHHHHHHHHhCC-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----------HhccH
Confidence 2222222 4566666555556666777765 688999999988887777543 332221211 12489
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccc----cc------------C--CCcchHHHH-HHHHhchhHHHHHHHHHHHH
Q 011925 203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKM----GL------------R--GNSHARISW-AYWFKKILYYQVALVYMLTR 263 (475)
Q Consensus 203 ~~~~~~~~~~~~i~~~~~~~~~~e~~~~~----~~------------~--~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~ 263 (475)
|+.+++.+++.++..++.++..||+++.. ++ + ++.+.++.+ +.++||+.+|...+..++..
T Consensus 187 ~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (452)
T PRK11273 187 HAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVY 266 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 99998877766665555545555533210 00 0 001112222 34678898888777777777
Q ss_pred HHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHH-HHHHHHHHHHHHHHHHhhcCCch
Q 011925 264 LVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILPMNM 341 (475)
Q Consensus 264 ~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~-~~~~~~~~~~~~~~~~~~~~~~~ 341 (475)
...+....|+|.|+++..|++..+.+.+..+..++.+++.++.+++ +|..++.|+ .......+..++...+...+..+
T Consensus 267 ~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~ 346 (452)
T PRK11273 267 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGN 346 (452)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccC
Confidence 6777788899999998888887777766666667777778877775 444221122 22222222223322222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHH-HHHHHHHhcc
Q 011925 342 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGI-AVYVLQSYQS 405 (475)
Q Consensus 342 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~i-g~~l~~~~~~ 405 (475)
.+...+...+.|.+..........+..+..|++.+| ...|+.+...++|+++ ++.+.+.+.+
T Consensus 347 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~~g~~v~g~l~~ 409 (452)
T PRK11273 347 PTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVGYTVD 409 (452)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhh--hHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 333333333444332222222233455678888898 8899888888887765 5777666653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-25 Score=222.17 Aligned_cols=371 Identities=14% Similarity=0.120 Sum_probs=274.2
Q ss_pred ccceehccccchhHHHHH-HHHHHHHHHHHHHc----CCC--------------------------hhHHHHHHHHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITA-ACWFTYLLLFLTDI----GLS--------------------------PRGAAAVMLSGQIA 71 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~-~~~~~~l~~~~~~~----g~s--------------------------~~~~g~i~~i~~l~ 71 (475)
.|+.++|.+-+++++... .++..++|.|+++. +.. .+..+...+++.+.
T Consensus 3 r~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~ 82 (477)
T PF11700_consen 3 RREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLL 82 (477)
T ss_pred hhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHH
Confidence 566777888888887533 45566789988874 211 34568899999999
Q ss_pred hhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhh
Q 011925 72 DGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMV 151 (475)
Q Consensus 72 ~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~ 151 (475)
.++..|+.|.++|+.||||.++.....++.++..+++. + .....+...+.+. +..+++...++.++++.
T Consensus 83 ~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~--v-----~~~~~~~~~~l~i----ia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 83 QALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF--V-----SPGQWWLALVLFI----IANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH--h-----CcchHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888877777776655552 1 1122333333333 56788899999999999
Q ss_pred cccCCCccc-------------------------hhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHH
Q 011925 152 NCITLNSTS-------------------------RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA 206 (475)
Q Consensus 152 ~~~~~~~~~-------------------------R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (475)
+++++++++ |++.++.....+.+|+++.-++...++...+.. .+...+.|..+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--~~~~~~~r~~~ 229 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--ASNTWAIRVAF 229 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--cccchhhhHHH
Confidence 999985544 289999888888888888766665554332221 12245678888
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccC-CC-------cchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 011925 207 YSSIFIGCCFVGIFLSRTEEPRLKMGLR-GN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 278 (475)
Q Consensus 207 ~~~~~~~~i~~~~~~~~~~e~~~~~~~~-~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 278 (475)
.+.++--++..+..++..||++.+++.+ .+ ++..+.+|++.|+|+...+++.+++..-+...+......|..
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~ 309 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYAT 309 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776677777778888875422211 11 133455677778888888888899988899999999999999
Q ss_pred hhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHH-HHHHHh-----hcCCchHHHHHHHHHH
Q 011925 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF-CGAGIL-----ILPMNMSAFMYVLAIF 351 (475)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~l 351 (475)
+.+|++..+...+..+..+.+++|+++.+++ +|++.|.|+++.++.+...+ +...+. ....++.+.+++..++
T Consensus 310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~ 389 (477)
T PF11700_consen 310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVL 389 (477)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHH
Confidence 9999999887777777788888899887776 44444323666666655533 222222 1123467778888999
Q ss_pred HHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCC
Q 011925 352 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP 408 (475)
Q Consensus 352 ~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~ 408 (475)
.|+..|..++...++..++.|+++++ .++|++++..|.++.+||.+.+.+.+..+
T Consensus 390 ~G~~~G~~qs~sRs~~~~LiP~g~e~--efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 390 IGLFMGGIQSASRSLFSRLIPPGREA--EFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999 99999999999999999999998876554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-25 Score=217.10 Aligned_cols=335 Identities=9% Similarity=0.020 Sum_probs=224.0
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCC
Q 011925 35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (475)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~ 114 (475)
.++..+....+.+|...+|.|+|+.+.|++.+.+.+..++.+++.|+++||+|||+. +.........+.....
T Consensus 2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~~~------ 74 (368)
T TIGR00903 2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF-LFGSLATFAAAAGRLL------ 74 (368)
T ss_pred hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHH------
Confidence 456777888888899988889999999999999999999999999999999998875 4443333333322111
Q ss_pred ccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 011925 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 194 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 194 (475)
.. .+... ++..++ +.+++.+.. .+..+...+..+ ++||+++.++...+..+|.++++.++.++..
T Consensus 75 --~~-~~~~~-l~~~R~---l~G~g~~~~-~~~~~~~~~~~~-~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~------ 139 (368)
T TIGR00903 75 --DP-FNYEW-LLACQL---LAALGQPFL-LNAFAPAASQIR-EERRDLVISLLSFAMYLGIIFALAAGLKIYT------ 139 (368)
T ss_pred --Hh-ccHHH-HHHHHH---HHHhHhHHH-HHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 00 12222 333332 566676643 444455577776 7899999999999999999998887777653
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC-CCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHH
Q 011925 195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL 273 (475)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (475)
..+||+.+++.++++++..++.++..||+++.++++ ++++..+++++++|||.++...+..++.....+.+.+|+
T Consensus 140 ----~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl 215 (368)
T TIGR00903 140 ----AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWL 215 (368)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999988888777777777778754322111 111123467889999999998888888888888999999
Q ss_pred HHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhh-HHH-HHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 011925 274 AFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL-KAY-YSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (475)
Q Consensus 274 ~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~-k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (475)
|+|+.+ .|++.. .+....+..+.+.++. +++ +|..||. |+. ........++....+.+. ++.+..+....
T Consensus 216 p~~L~~-~g~s~~-~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ 288 (368)
T TIGR00903 216 EAALRP-AGLEDI-AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE--LNRLALFAFIG 288 (368)
T ss_pred HHHHHH-CCCChH-HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc--cccHHHHHHHH
Confidence 999965 466643 3433333333333332 333 2322221 222 222233333332222222 22333334445
Q ss_pred HHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 351 l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.+++.....+....+..+..|++.+| +..|+.+...++++..++.+.+.+.
T Consensus 289 l~~~~~~~~~~~~~~~~~~~~p~~~rg--t~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 289 IAGLLMLPAYAIIMDWIGKFCDKELHG--KAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHHhhhhhHHHHHHHHHHhcchhhcC--cccchhhHHHHHHHHHHHHHHHHHh
Confidence 566666666666777888889999999 8899999999999988888877655
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-26 Score=231.04 Aligned_cols=353 Identities=10% Similarity=0.015 Sum_probs=255.3
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~ 102 (475)
|......+++.+...++.++++..+|.+.+|+|.+..+.+|+.+.+.+..++.+|+.|+++||+||||.+ +.+...+.+
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l-~~~~~~~~~ 83 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL-MLGGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHH
Confidence 4455677888888899999999999999999999999999999999999999999999999999999985 445555555
Q ss_pred HHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHH
Q 011925 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (475)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (475)
+.+.... . .+. +.++..+. +.+++.+...+...+.+.+..+++++|++..++......+|..+++.+
T Consensus 84 ~~~~~~~-------a--~~~-~~li~~r~---l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l 150 (495)
T PRK14995 84 ASLAAAF-------S--PTA-SWLIATRA---LLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV 150 (495)
T ss_pred HHHHHHH-------c--CCH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433221 1 122 22333332 677777776666666666655557899999999999999999998888
Q ss_pred HHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCc-------------------------
Q 011925 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS------------------------- 237 (475)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~------------------------- 237 (475)
++.+.+ ..+||+.|++...++++..++.++..||++++++++.+.
T Consensus 151 gg~l~~----------~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~ 220 (495)
T PRK14995 151 GGILLE----------HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFL 220 (495)
T ss_pred HHHhhc----------cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCC
Confidence 877753 358999999887777776666666666643221111000
Q ss_pred ch------------------HHHH--------HHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhH
Q 011925 238 HA------------------RISW--------AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV 291 (475)
Q Consensus 238 ~~------------------~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~ 291 (475)
+. .... .+++|||.+....+..++..........++|.|+++..|+++.+++..
T Consensus 221 ~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~ 300 (495)
T PRK14995 221 SLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMF 300 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 00 0000 256788877766666666666677778899999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 011925 292 PAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNV 369 (475)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~ 369 (475)
.....++..++.++.+++ +|.++ |+.+..+..+..++...+.... .++.+......++.|+|.+...+........
T Consensus 301 ~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~ 378 (495)
T PRK14995 301 MLPVMVASGFSGPIAGILVSRLGL--RLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMA 378 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 877778888888887765 44443 5666667766666654443332 2344445566788899999888777777777
Q ss_pred hccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 370 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 370 ~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
..|+++.| ...+++++.+++|+.+|..+.+.+
T Consensus 379 ~~~~~~~g--~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 379 AAPPEKAA--AAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred cCCHHhcc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888 888999999999999998777654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-25 Score=218.15 Aligned_cols=346 Identities=12% Similarity=-0.002 Sum_probs=225.6
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
.|+..+..+.+.+............+|.+.+|.|.|+.++|+..++..+...+.+|+.|+++||+||||.++ .+.+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~-~~~~~~~ 96 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVI-LFAVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHH-HHHHHHH
Confidence 455545555554444444445556788888888999999999999999999999999999999999999854 4444455
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
++..+.. . ..+.+.. ...+ .+.+++.+...+...++++|..+ +++|+++.+......++|..+++.
T Consensus 97 ~~~~~~~-------~--~~~~~~l-~~~r---~l~G~~~g~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~ 162 (394)
T PRK10213 97 LSCLLVS-------F--ANSFSLL-LIGR---ACLGLALGGFWAMSASLTMRLVP-PRTVPKALSVIFGAVSIALVIAAP 162 (394)
T ss_pred HHHHHHH-------H--HChHHHH-HHHH---HHHHHhhHHHHHHHHHHHHHHcC-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443222 1 1123332 2222 26777777777788888899886 788999999998988899888888
Q ss_pred HHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHH
Q 011925 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (475)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 261 (475)
+++.+.+ ..+||+.+++.+++++++.++.....||++++ + ++..+..++.+|||.++...+..++
T Consensus 163 l~~~l~~----------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~~~ 227 (394)
T PRK10213 163 LGSFLGE----------LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE---P--SHQKQNTFRLLQRPGVMAGMIAIFM 227 (394)
T ss_pred HHHHHHh----------hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc---c--ccchhHHHHHhcCHHHHHHHHHHHH
Confidence 8776653 35899999888776666555544445663211 1 1122344678899988776555555
Q ss_pred HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcCCc
Q 011925 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMN 340 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-k~~~~~~~~~~~~~~~~~~~~~~~ 340 (475)
.........++++.++.++.|+++.+.+.......++.+++.++.+++ .||. |+....+..+.......+.... +
T Consensus 228 ~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l---~~r~~~~~l~~~~~~~~~~~~~l~~~~-~ 303 (394)
T PRK10213 228 SFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFI---LKRSVKLALAGAPLVLAVSALVLTLWG-S 303 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH---HhccchhHHHHHHHHHHHHHHHHHHHh-h
Confidence 545555556676444455668888777776666677778887766554 3433 4443444333333322222222 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 341 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.+......++.|++.+...+......++..++ +.+ ...+.......+|..+|+.+.+.+.
T Consensus 304 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~lg~~~G~~l~G~l~ 364 (394)
T PRK10213 304 DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAE--KAGSIQVAVIQLANTCGAAIGGYAL 364 (394)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667788998888887777666666653 344 4444555555667777777666664
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-27 Score=235.58 Aligned_cols=342 Identities=11% Similarity=-0.023 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccch
Q 011925 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (475)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 122 (475)
.+..+|.+.+|+|+|..+.|++.+++.+..++.+|+.|+++||+||||.+ ..+.+..++.....-. .++.. ..+.
T Consensus 48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l-~~~~~~~~~~~~~~~~--~~~~~--~~~~ 122 (467)
T PRK09556 48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL-PFLLILSAICMLGFGA--SLGSG--SVSL 122 (467)
T ss_pred hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH-HHHHHHHHHHHHHHHH--HHhcc--cchH
Confidence 44557777777799999999999999999999999999999999999974 3344333333221110 11011 1122
Q ss_pred hhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHH
Q 011925 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (475)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (475)
+.+...+ .+.+++.+...++..++++++.+ ++||+++.++...+..+|.++++.+...+..... ..+|
T Consensus 123 -~~l~~~r---~l~G~~~~~~~~~~~~~i~~~~~-~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~-------~~~~ 190 (467)
T PRK09556 123 -GLMIALW---ALSGFFQSTGGPCSYSTITRWTP-RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF-------DGHV 190 (467)
T ss_pred -HHHHHHH---HHHHHHHhccchHHHHHHHHHcC-ccceeeeEEeeecccchhhhHHHHHHHHHHHhhc-------cCcc
Confidence 2223333 26677777777777788899887 7889999999988888898887776654443210 1258
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccc-----------c--cCC----Cc--chHHH-HHHHHhchhHHHHHHHHHHH
Q 011925 203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----------G--LRG----NS--HARIS-WAYWFKKILYYQVALVYMLT 262 (475)
Q Consensus 203 ~~~~~~~~~~~~i~~~~~~~~~~e~~~~~-----------~--~~~----~~--~~~~~-~~~l~~~~~~~~~~~~~~~~ 262 (475)
+..+.+.++++++..++.++..+|++++. + +++ ++ +..+. .++.+|||.++...+..++.
T Consensus 191 ~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 270 (467)
T PRK09556 191 IGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFL 270 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 87777766666655555544444322110 0 000 00 11122 23478999999888887777
Q ss_pred HHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCch
Q 011925 263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNM 341 (475)
Q Consensus 263 ~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~ 341 (475)
.........|.|.|+++..|++..+.+.......++.+++.++.+++ +|+++ |+..........++.....+...++
T Consensus 271 ~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~--r~~~~~~~~~~~~~~~~~~~~~~~~ 348 (467)
T PRK09556 271 YIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANG--RRALVACIALALIIFTLGVYQHATS 348 (467)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHHHHHHHHhcCc
Confidence 77777788999999999889998877777666677788888887775 44443 3433333322222221111112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHH-HHHHHHHHHHHhcc
Q 011925 342 SAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQSYQS 405 (475)
Q Consensus 342 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~i-g~~ig~~l~~~~~~ 405 (475)
.+...+..++.|++.............+..|++.+| .+.|+.+....+ |.++++.+.+.+.+
T Consensus 349 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g--~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 349 EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIG--VANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHH--HHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 434444455555432222222223344677888888 899999888886 66899999988875
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-25 Score=218.83 Aligned_cols=338 Identities=12% Similarity=-0.013 Sum_probs=215.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCc
Q 011925 33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (475)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~ 111 (475)
.+...+..++..+++|.|+++. |.|+.++|++.+++.+...+.+|+.|+++||+||||++++.+.+...++..+..
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~--- 82 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA--- 82 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH---
Confidence 4556677788889999998775 999999999999999999999999999999999999866655555444433222
Q ss_pred cCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhH--hhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVL--TSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~--~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
.. .+.+. +...+ .+.+.+.+...+...++..+..+ +++|.+. .+....+..+|..+++.+++.+.+
T Consensus 83 ----~~--~~~~~-l~~~~---~~~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~- 150 (375)
T TIGR00899 83 ----WN--RNYFL-LLVLG---VLLSSFASTANPQLFALAREHAD-RTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL- 150 (375)
T ss_pred ----hc--chHHH-HHHHH---HHHHhhhhhhHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-
Confidence 11 12222 22222 13444444455555667777654 4445432 466666677787777766665542
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhh
Q 011925 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (475)
..+||+.+++.+++.++..++.++..||+++++++++ .+++.++.+|+|+++......++........
T Consensus 151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T TIGR00899 151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---TRLEVRGLLASRDTRLLFVACTLMWGCNILY 218 (375)
T ss_pred ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---CcchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence 3589999998877766666665565676433221111 1223455677887776555444444444455
Q ss_pred hHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 011925 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVL 348 (475)
Q Consensus 270 ~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (475)
..++|.|++++.|.++.+.+..........+++.++.+++ +|.++ |+.+.++.....+........ ++.+.....
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 294 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGK--RRLMLLAALAGVAFYTGLAAD--NSLWALLML 294 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 6778999888888888777655444444444555555554 33333 555555554444433333222 344555556
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 349 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 349 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
..+.|++.+...+....+.++..|++ ++ ...++.+...++|..+++.+.+.+.
T Consensus 295 ~~~~g~~~g~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 295 QLLNAIFIGILAGIGMLYFQDLMPGR-AG--AATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcch-hh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888877776666666666654 45 6788888888899999988887765
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-25 Score=220.43 Aligned_cols=352 Identities=12% Similarity=0.031 Sum_probs=233.5
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
+|...+.-....+.........+...|.+.+|.|.|+.+.|++.+...+...+..++.|+++||+||||.++. +.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~ 91 (406)
T PRK11551 13 LALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV-SVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH-HHHHHH
Confidence 3444444555666677777778788888888889999999999999999999999999999999999998554 444444
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
+..+.... . .+.+...+.. .+.+++.+...+...+++.|..+ +++|++..++.+.+..+|..+++.
T Consensus 92 ~~~~~~~~-------~--~~~~~~~~~~----~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~ 157 (406)
T PRK11551 92 LFSLATAQ-------A--WDFPSLLVAR----LLTGVGLGGALPNLIALTSEAVG-PRLRGTAVSLMYCGVPFGGALASV 157 (406)
T ss_pred HHHHHHHH-------h--ccHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332221 1 1222222222 26777777777778888899886 788999999988888888887766
Q ss_pred HHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC-CcchHHHHHHHHhc---hhHHHHHH
Q 011925 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-NSHARISWAYWFKK---ILYYQVAL 257 (475)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~l~~~---~~~~~~~~ 257 (475)
++..+. ...+|++.+++.+++.++..++.....||++++.++++ +++.++..+..+|+ +..+...+
T Consensus 158 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (406)
T PRK11551 158 IGVLAA----------GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWI 227 (406)
T ss_pred HHHHHc----------cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHH
Confidence 654332 24579998887766555555444455666543221111 11111222233332 22233333
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 011925 258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI 336 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~ 336 (475)
..++.....+....|+|.|+.+ .|.++.+.+.......++.+++.++.+++ +|+++ |+.+..+.....++...+..
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~~~~ 304 (406)
T PRK11551 228 SYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRP--RRVVLLIYAGILASLAALAA 304 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHh
Confidence 3444444555667788999876 58887777777777777788888887765 44433 45555544444444443333
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 337 LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 337 ~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
.+ +.+...+..++.|++.+...+...++..+..|++++| ...|+.+....+|..+|+.+.+.+..
T Consensus 305 ~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 305 AP--SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRG--TGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred cC--cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhh--hhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 32 4444455566777777777777777888888888888 88899999999999999999888754
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-26 Score=227.47 Aligned_cols=350 Identities=11% Similarity=0.026 Sum_probs=217.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
..++.+...+.......++|.+.++.|+|+.+.|++.+++.+...+.+|+.|+++||+||||. +..+.+..+++..+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF-MGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh-HHHHHHHHHHHHHHHH
Confidence 344444444444456677888888889999999999999999999999999999999999987 4555555555543222
Q ss_pred CCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011925 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (475)
Q Consensus 109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (475)
. ..+.+...+.+. +.+++.+...++..+++.+..+ +++|++..++.+.+..+|..+++.+.+.+..
T Consensus 107 -------~--~~~~~~l~~~~~----l~g~~~g~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 107 -------F--SSSLWAFALLWV----LNAFFQGWGWPVCAKLLTAWYS-RTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred -------H--HhHHHHHHHHHH----HHHHHHHccchHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222222222 4556666666667788888876 7789999999999988998888777766542
Q ss_pred hhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---c------c-----CCC----cchHHHHH-HHHhc
Q 011925 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G------L-----RGN----SHARISWA-YWFKK 249 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~---~------~-----~~~----~~~~~~~~-~l~~~ 249 (475)
..+||+.+++.+++.++..++.++..||+++.. + + +++ .+.++.++ ..+||
T Consensus 173 ----------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (434)
T PRK11663 173 ----------HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLN 242 (434)
T ss_pred ----------cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcC
Confidence 358999998877766554444434445432210 0 0 000 01112222 25677
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHH-HHHHHHH
Q 011925 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYY-SAGGVLW 327 (475)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~-~~~~~~~ 327 (475)
+.++...+..++..........|+|.|+.++.|++..+.+.......++.+++.++.+++ +|+.+|.|+.. .......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 887777666666666667778899999988889988877777677777888888887775 44422212221 1111111
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 328 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
.+....+...+..+........+..|++.............+..+++++| ...|+.+...++|..+++.+.+.+.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~p~~~g~l~~ 398 (434)
T PRK11663 323 LLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAG--AATGFVGLFAYLGAALSGYPLAKVLE 398 (434)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHH--hHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 11112222223223222222223333322211112223345556777788 89999999999999999988887654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-25 Score=222.62 Aligned_cols=352 Identities=10% Similarity=0.018 Sum_probs=231.6
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~ 105 (475)
.....++.+..........+.+|.+.+|.|.|+.+.++..+.+.+...+.+|+.|+++||+||||.+ ..+....+++..
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l-~~~~~~~~~~~~ 93 (406)
T PRK15402 15 PLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM-LAGVAFFILTCL 93 (406)
T ss_pred HHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHH
Confidence 3445555555555666666777877777899999999999999999999999999999999999874 445555555544
Q ss_pred HhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHH
Q 011925 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (475)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (475)
.... . .+.+. +...+ .+.+++.+.......+.+.|..+ +++|.+..+.......++..+++.++..
T Consensus 94 ~~~~-------~--~~~~~-l~~~~---~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 159 (406)
T PRK15402 94 AILL-------A--QSIEQ-FTLLR---FLQGIGLCFIGAVGYAAIQESFE-EADAIKITALMANVALLAPLLGPLVGAA 159 (406)
T ss_pred HHHH-------H--ccHHH-HHHHH---HHHHhHhhhHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 1 12222 22222 25566666555556677777765 6778887777766666676776666655
Q ss_pred HHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC-CCcchHHHHHHHHhchhHHHHHHHHHHHHH
Q 011925 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRL 264 (475)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 264 (475)
+.+ ..+||+.+++.+++.++.....++..||++.+++++ +.++..+++++++|||+++...+...+...
T Consensus 160 l~~----------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (406)
T PRK15402 160 LIH----------VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSL 229 (406)
T ss_pred HHH----------ccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 542 347999988877776666555555566654322111 112345667888999988876666555555
Q ss_pred HHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc---CCc
Q 011925 265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL---PMN 340 (475)
Q Consensus 265 ~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~---~~~ 340 (475)
.......+.|.|+.+..|.++.+.+.......++.+++.++.+++ +|.++ |+.+.++.....++...+... ...
T Consensus 230 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~ 307 (406)
T PRK15402 230 PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPL--RSLIRMGLWPMVAGLLLAALATVISSH 307 (406)
T ss_pred HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 555556678888888888888777766555555666777766554 33332 556666666555554443332 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccC
Q 011925 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS 407 (475)
Q Consensus 341 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~ 407 (475)
+.++.++..++.|++.+...+........ .+++++| .+.++.++.+.++.++|+.+.+.+....
T Consensus 308 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g--~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 308 AYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKG--TVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hcccccc--HHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 44455566778888888776655444433 3347778 8999999999999999999988876433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-25 Score=216.87 Aligned_cols=342 Identities=13% Similarity=0.041 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhcc-----CCcchhHHHHHHHHHHHHHHhcC
Q 011925 35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFG 109 (475)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~-----Grr~~~l~~~~~~~~~~~~~~~~ 109 (475)
..++..+.....+|.|+++.|+|..++|++..+... .+.+|++|+++||+ ||||+|+..+.+..+++...+..
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~ 87 (402)
T PRK11902 10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF 87 (402)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 345677778889999999999999999999888876 49999999999999 99999888887777766555442
Q ss_pred CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
.+ ...+.+.....+. +.+...+..+++..++.++..+ ++||+++.+++..+..+|.++++.+...+.+.
T Consensus 88 --~~----~~~~~~~l~~~~~----~~~~~~~~~~~~~~al~~~~~~-~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 88 --CP----PHAALWPLAGLAV----LVAFLSASQDIVFDAYSTDVLH-PEERGAGAAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred --cC----ccchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 11 1122222222222 4566777788999999999976 78899999999999888988887776665431
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC--CcchHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 011925 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVN 267 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (475)
..+||..+++.+++.++..+.. +..||++.++++++ +++.++.+++++|||.++...+..++......
T Consensus 157 ---------~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~ 226 (402)
T PRK11902 157 ---------VLGWGNTYLLMAGLMLAGALTT-LWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDA 226 (402)
T ss_pred ---------ccCHHHHHHHHHHHHHHHHHHH-HhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH
Confidence 2389999998877665554433 45566543321111 12345678889999998876665555544433
Q ss_pred hhhHHHHHHHhhhcccccchhhhHhHHHH-HHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH---hhcCCchH
Q 011925 268 VSQAYLAFYVINDLRMGQSAKALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI---LILPMNMS 342 (475)
Q Consensus 268 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~---~~~~~~~~ 342 (475)
....+.+.|+.++.|+++.+.+.+..... ++.+++.++.+++ +|+++ |+...++.....+..+.+ ...+ ++.
T Consensus 227 ~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~--~~~l~~~~~~~~l~~l~~~~~~~~~-~~~ 303 (402)
T PRK11902 227 FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGL--YRSLMLFGVLQAVSNLGYWVLAVTP-KHL 303 (402)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhcC-CcH
Confidence 33345566677778988877776654332 3456677776664 44444 444444444433332222 2222 344
Q ss_pred HHHHHHHH----HHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 343 AFMYVLAI----FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 343 ~~~~~~~~----l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.+..... ..+++.+...+....+.++..|.++.+ ...++.++....++.+++.+.+.++
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~G~l~~~~G 367 (402)
T PRK11902 304 WTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA--LLSALASVGRVYVGPTSGYLVEAYG 367 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44343333 344555555666666666666655554 5444444555445556666666655
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-25 Score=222.51 Aligned_cols=353 Identities=13% Similarity=0.054 Sum_probs=232.8
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhcc-----CCcchhHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGS 97 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~-----Grr~~~l~~~~ 97 (475)
+|+........+..++........+|.++++.|.+..++|....+.... +.+|++|+++||+ ||||+|++.+.
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~--~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~ 88 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY--VFKFLWSPLMDRYTPPFLGRRRGWLLATQ 88 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHcccccCCCCchHHHHHHH
Confidence 3444555555666778888888999999999999999999975444443 6899999999998 99999988888
Q ss_pred HHHHHHHHHh-cCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHH
Q 011925 98 VLVAVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (475)
Q Consensus 98 ~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~ 176 (475)
+..+++...+ +. .| ..+.++...... +.+++.+..+++..++..|..+ ++||++..++...+..+|.
T Consensus 89 i~~~~~~~~~a~~--~~-----~~~l~~l~~~~~----l~~~~~a~~~i~~~a~~~~~~~-~~~rg~~~~i~~~g~~lG~ 156 (491)
T PRK11010 89 LLLLVAIAAMGFL--EP-----GTQLRWLAALAV----VIAFCSASQDIVFDAWKTDVLP-AEERGAGAAISVLGYRLAM 156 (491)
T ss_pred HHHHHHHHHHHHc--CC-----cchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHH
Confidence 8777665443 31 11 222333322333 5677788889999999999987 7899999999999999998
Q ss_pred HHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC--CcchHHHHHHHHhchhHHH
Q 011925 177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQ 254 (475)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 254 (475)
++++.+...+.+ ...|||..+++.+++.++..+..++ .||+++.+++++ +++..+++++.+++++.+.
T Consensus 157 llg~~l~~~l~~---------~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (491)
T PRK11010 157 LVSGGLALWLAD---------RYLGWQGMYWLMAALLIPCIIATLL-APEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWL 226 (491)
T ss_pred HHHHHHHHHHHh---------cccCHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccchhhhHHHHHHHHHcCcCHHH
Confidence 888776666542 1248999999988777666555443 677543211111 1122356778888777665
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhH-HHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 011925 255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPA-IIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~ 332 (475)
..+..++..........+.+.|+.+..|++..+.+.... ...++.+++.++.+++ +|+++ |+.+.++..+.++...
T Consensus 227 ~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~--~~~l~i~~~l~~l~~l 304 (491)
T PRK11010 227 ILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSL--FRALMIFGILQGVSNA 304 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH
Confidence 555555555555566778888888778999888877653 4446777888877765 55554 4444444443333222
Q ss_pred HH---hhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 333 GI---LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 333 ~~---~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.+ .... ++.+.+....++..++.+...+....+..+..+++..| ..+++.+....+|..+++.+.+.+.
T Consensus 305 ~~~~l~~~~-~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~--t~~gl~~s~~~lg~~~~~~~~G~l~ 376 (491)
T PRK11010 305 GYWLLSITD-KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSA--TQFALLSALSAVGRVYVGPVAGWFV 376 (491)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 2221 23333333444544444544454556666667777777 6777777777777777766666554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=214.39 Aligned_cols=334 Identities=12% Similarity=0.068 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCC
Q 011925 39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS 118 (475)
Q Consensus 39 ~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~ 118 (475)
......+.+|.+.++.|.|..+.+++.+++.+...+.+|+.|+++||+||||. ++.+.+...++..+... .
T Consensus 18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~-l~~~~~~~~i~~~~~~~-------~- 88 (392)
T PRK10473 18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV-AIPGAALFIIASLLCSL-------A- 88 (392)
T ss_pred HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH-HHHHHHHHHHHHHHHHH-------h-
Confidence 33444467888888889999999999999999999999999999999999886 55555555555543331 1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccch
Q 011925 119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (475)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (475)
.+.....+.. .+.+.+.+.......+++.+..+ +++|++..+..+....+|..+++.++..+..
T Consensus 89 -~~~~~~~~~~----~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---------- 152 (392)
T PRK10473 89 -ETSSLFLAGR----FLQGIGAGCCYVVAFAILRDTLD-DRRRAKVLSLLNGITCIIPVLAPVLGHLIML---------- 152 (392)
T ss_pred -CcHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 1222222222 25677777777777888888876 7889999999888888887777766655432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 011925 199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 278 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 278 (475)
..+|++.+++.+.+.++..++.+...||+++++ ++++.+..+..++.+|||+++...+...+..........+.|.|.+
T Consensus 153 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (392)
T PRK10473 153 KFPWQSLFYTMAAMGILVLLLSLFILKETRPAR-APAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLM 231 (392)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-cCCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 348999988887777766666656667754322 1222233445567788988776555444444444455666788888
Q ss_pred hhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 011925 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 357 (475)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~ 357 (475)
++.|+++.+.+.......++.+++.++.+++ +|+++ |+...++..+..++.+.+.+.+ +.+.......+.+.|.+
T Consensus 232 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~ 307 (392)
T PRK10473 232 EQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKP--RTLMLTSQVLFLAAGITLALSP--SHAVSLFGITLICAGFS 307 (392)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 8889888777766666677777777776664 34433 5666677666666655544433 22222333334444443
Q ss_pred HHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 358 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
...+........ ..+++.| ...++.++.+.+|+++++.+.+.+++
T Consensus 308 ~~~~~~~~~~~~-~~~~~~g--~~~~~~~~~~~~g~~~~~~l~~~~g~ 352 (392)
T PRK10473 308 VGFGVAMSQALG-PFSLRAG--VASSTLGIAQVCGSSLWIWLAAVLGI 352 (392)
T ss_pred HHhHHHHHHHhc-cCccccc--HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333322221111 1234456 78888889999999999999988874
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=215.38 Aligned_cols=380 Identities=15% Similarity=0.098 Sum_probs=254.9
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhh----ccCCcchhHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGS 97 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~D----r~Grr~~~l~~~~ 97 (475)
+.++.+..+...++.++.+++..+++++|+++.|.++...+++..+..+.+.+.+|+.|+++| |+||||++++.+.
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 455667777788889999999999999998888999999999999999999999999999999 5999999988877
Q ss_pred HHHHHHHHHhcCCccCCc---cCC---ccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccch-hhHhhHHHH
Q 011925 98 VLVAVSFSSVFGGCMPCR---ILS---TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR-VVLTSCRNA 170 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~p~~---~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R-~~~~~~~~~ 170 (475)
+...+++.++.. .+.. ... .....+....+.+...+.+++....+.|+.++++|++++++|| +.+.++...
T Consensus 82 ~~~~~~l~ll~~--~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~ 159 (477)
T TIGR01301 82 ALVAFAVILIGF--AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF 159 (477)
T ss_pred HHHHHHHHHHHh--CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 777777655431 1100 000 0011111112222222566788888999999999999866555 578888889
Q ss_pred HHHHHHHHHHHHHHHH--HHhhccCCc---cchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc---------CCC
Q 011925 171 FTMVANLSLYAIAFIV--FSVSTAKTH---ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---------RGN 236 (475)
Q Consensus 171 ~~~~g~~~~~~~~~~l--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~---------~~~ 236 (475)
+.++|.+++..+++.. ...++.... +....+.+..|++.+++.+++.++..+..||++..+++ .++
T Consensus 160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~ 239 (477)
T TIGR01301 160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSK 239 (477)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccc
Confidence 9999999988877654 222211100 00123788999988888888888888888886431110 011
Q ss_pred cchHHHHHHHHhc-----hhHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cccccc------h---hh-hHhHHHHHHHH
Q 011925 237 SHARISWAYWFKK-----ILYYQVALVYMLTRLVVNVSQAYLAFYVIND-LRMGQS------A---KA-LVPAIIYICSF 300 (475)
Q Consensus 237 ~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~g~~~~------~---~~-~~~~~~~~~~~ 300 (475)
.+....+++++++ |.++.+++..++.+++.+.+..|...|+.++ .+-++. + .+ +......+.+.
T Consensus 240 ~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~ 319 (477)
T TIGR01301 240 HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG 319 (477)
T ss_pred cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223333332 4578889999999999999999999998753 222111 1 12 22233334444
Q ss_pred HHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCC--ch-----------------HHHHHHHHHHHHHHHHHHH
Q 011925 301 IVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPM--NM-----------------SAFMYVLAIFVGIANALMM 360 (475)
Q Consensus 301 ~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~l~g~g~~~~~ 360 (475)
+.+++..++ ++.++| |+...++.++.++++....+... ++ .+..++...+.|+.++..+
T Consensus 320 i~s~~l~~l~~~~g~~-k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~ 398 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAG-KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY 398 (477)
T ss_pred HHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH
Confidence 555555554 333322 56667777777777655554321 00 2455667788999999999
Q ss_pred HhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 361 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 361 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
....++..+..+++.+|.|.++|+.|.+..+.+.+.....+.+.
T Consensus 399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~ 442 (477)
T TIGR01301 399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWD 442 (477)
T ss_pred HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877754454449999999999988888877666543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-25 Score=219.14 Aligned_cols=353 Identities=9% Similarity=0.036 Sum_probs=224.9
Q ss_pred CCCCccc-eehccccchhHHHHHHHHHHHHHHHHHHcCCChhH-----HHHHHHHHHHHhhhhhhhhhhhhhccCCcchh
Q 011925 19 QPVGRWS-VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG-----AAAVMLSGQIADGFATIFIGELIDRFGHFKIW 92 (475)
Q Consensus 19 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~-----~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~ 92 (475)
++.+|++ .....++.+..+.......+++|.|++|.|.+..+ .|++.++..+.+.+.+|++|+++||+||||.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 87 (408)
T PRK09874 8 TPINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML 87 (408)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH
Confidence 3344444 33445777888888888889999999998887543 59999999999999999999999999999875
Q ss_pred HHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHH
Q 011925 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (475)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~ 172 (475)
..+.+..+++..+... ..+.+. +...++ +.+++.+ ...+..+++.+..+ +++|++..+......
T Consensus 88 -~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~---~~g~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (408)
T PRK09874 88 -LRSALGMGIVMVLMGL---------AQNIWQ-FLILRA---LLGLLGG-FVPNANALIATQVP-RNKSGWALGTLSTGG 151 (408)
T ss_pred -HHHHHHHHHHHHHHHH---------HhhHHH-HHHHHH---HHHHhhh-hHHhHHHHHHHhcC-HhhhhHHHHHHHHHH
Confidence 4455555555433221 112222 222222 4444433 33445566777765 778999999888888
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhH
Q 011925 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252 (475)
Q Consensus 173 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (475)
.+|..+++.+.+.+.. ..+|++.+++.+++.++..+..++..||++.+.+++++.+ .+...+.+|++++
T Consensus 152 ~~g~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 220 (408)
T PRK09874 152 VSGALLGPLAGGLLAD----------SYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLH-MREVVTSLKNPKL 220 (408)
T ss_pred HHHHHHHHHHHHHHHH----------HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhH-HHHHHHhCcCCch
Confidence 8888887777766543 3579998888777666666555555666432221111112 2233445677765
Q ss_pred HHH-HHHHHHHHHHHHhhhHHHHHHHhhhcccccc---hhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHH
Q 011925 253 YQV-ALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVL 326 (475)
Q Consensus 253 ~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~ 326 (475)
+.. .....+..........+++.|..+..+.... ..+.+.....++.+++.+..++ +.||. |+.+..+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~---l~dr~g~~~~~~~~~~~ 297 (408)
T PRK09874 221 VLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGK---LGDRIGPEKILITALIF 297 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhccccchhHHHHHHH
Confidence 543 2333334444455667788887765332221 1223333334444555554444 44444 4556666655
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 327 WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
..++.+...+. ++.+...+..++.|++.+...+....+..+..+++++| ..+++++...++|..+|+.+.+.+.+
T Consensus 298 ~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~~gp~~~G~l~~ 372 (408)
T PRK09874 298 SVLLLIPMSFV--QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAG--RIFSYNQSFRDIGNVTGPLMGAAISA 372 (408)
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccce--eeehHHHHHHHHHHHhhHHHHHHHHh
Confidence 55544433332 24555556677889999988888777777778888888 78888888999999999988877653
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-25 Score=215.50 Aligned_cols=338 Identities=14% Similarity=0.073 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCc
Q 011925 36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (475)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~ 115 (475)
.........+.+|.+.+|.|.|+.++|++.+++.+...+.+++.|+++||+||||.+ ..+..+.+++......
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~-~~~~~~~~~~~~~~~~------ 89 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL-LLGLFIFALSSLGLAL------ 89 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH-HHHHHHHHHHHHHHHH------
Confidence 344555555667777777799999999999999999999999999999999998874 4455555555433321
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 011925 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (475)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 195 (475)
..+.+...+.. .+.+++.+...++..+++.|..+ +++|++..+..+....+|..+++.+++.+..
T Consensus 90 ---~~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~------- 154 (385)
T TIGR00710 90 ---SNNIETLLVLR----FVQAFGASAGSVISQALVRDIYP-GEELSRIYSILMPVLALAPAVAPLLGGYILV------- 154 (385)
T ss_pred ---HccHHHHHHHH----HHHHcchhHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 11222222222 26777888888888899999886 7889999999999888888888877766543
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHH
Q 011925 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
..+||+.+++.+++.++..++.++..||++++++++++++..+.+++.+|||+++...+...+..........+.|.
T Consensus 155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (385)
T TIGR00710 155 ---WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPF 231 (385)
T ss_pred ---HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChH
Confidence 35899988887776666665555556665432222222233456778899998887766666666666677778899
Q ss_pred HHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC--C-chHHHHHHHHHH
Q 011925 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--M-NMSAFMYVLAIF 351 (475)
Q Consensus 276 y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l 351 (475)
|+.+..|.++.+.+.+.....++.+++.++.+++ +|+++ |+.+..+..+..++...+.... . .+.........+
T Consensus 232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (385)
T TIGR00710 232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGA--KSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMF 309 (385)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9888889888877777777777778888887765 44444 4555555555554443333221 1 223333445667
Q ss_pred HHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 352 VGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 352 ~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
.|++.+...+.......+..| +++| ...++.+.....++.+.+.+++..
T Consensus 310 ~g~~~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 310 VGIGNSMISSIAMAYALEDFP-HVAG--TASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHHHHHHHHHhccCc-ccch--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788888777766666555554 4566 788888888777777777776643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-25 Score=216.37 Aligned_cols=334 Identities=12% Similarity=-0.014 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCcc
Q 011925 41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (475)
Q Consensus 41 ~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~ 120 (475)
.....++|.+.++.|+|..++|++.+++.+...+.+|+.|+++||+||||+++. +.++.+++..+... ..
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~-~~~~~~~~~~~~~~---------~~ 89 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAML-GGILYGLGFTFYAI---------AD 89 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHH-hHHHHHHHHHHHHH---------HH
Confidence 344556677666679999999999999999999999999999999999998554 44454454432221 11
Q ss_pred chhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHH
Q 011925 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (475)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
+.+...+.+. +.+++.+....+......+.. +|+|+++.+....+..+|..+++.+...+. ...
T Consensus 90 ~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~ 153 (377)
T TIGR00890 90 SLAALYLTYG----LASAGVGIAYGIALNTAVKWF--PDKRGLASGIIIGGYGLGSFILSPLITSVI----------NLE 153 (377)
T ss_pred HHHHHHHHHH----HHhHHHHHHHHhHHHHHHHHc--CcccHHHHHHHHHhcchhHhHHHHHHHHHH----------hcc
Confidence 2222222222 556666655444445555554 367999999888887777665443332222 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccc--CCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 011925 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 278 (475)
Q Consensus 201 ~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 278 (475)
+||+.+++.+++.++..+..++..||+++++++ ++.++.....++.+|||+++...+..++..........+.+.|.+
T Consensus 154 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (377)
T TIGR00890 154 GVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQ 233 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 899999988877777666655555554332111 111122335577889988877666555555554555566677754
Q ss_pred hhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 011925 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 357 (475)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~ 357 (475)
+.|.+..+.+.......++.+++.++.+++ +|+++ |+.+.++.....++.....+.+..+.+..+....+.+++.+
T Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 310 (377)
T TIGR00890 234 -SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGR--QKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWG 310 (377)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc
Confidence 467776666666666677777888877765 44443 55666666666666555544432222333344556677776
Q ss_pred HHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 358 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
...+....+..+..|++++| ...|+.+...++|..+++.+.+.+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 311 GTISLFPSLVSDIFGPANSA--ANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred cchhccHHHHHHHhhhhhhh--hHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665566677778888888 88999999999999999988887653
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-24 Score=213.25 Aligned_cols=350 Identities=13% Similarity=0.064 Sum_probs=223.2
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
.++.........+..........+.+|.+.++.|.|+.+.+++.+++.+...+.+|+.|+++||+||||.+ ..+.....
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~-~~~~~~~~ 84 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI-LVGMSIFI 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH-HHHHHHHH
Confidence 34444433333333344445555667777777899999999999999999999999999999999999874 44554444
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
++...... ..+.+.. ...+ .+.+++.+...+....+..+..+ +++|++..+....+..++..+++.
T Consensus 85 ~~~~~~~~---------~~~~~~l-~~~~---~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 150 (394)
T PRK11652 85 LGTLVALF---------AHSLTVL-IAAS---AIQGLGTGVGGVMARTLPRDLYE-GTQLRHANSLLNMGILVSPLLAPL 150 (394)
T ss_pred HHHHHHHH---------HccHHHH-HHHH---HHHHhhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433221 1122222 2222 25566666555555566667654 577888888887777777777776
Q ss_pred HHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHH
Q 011925 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (475)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 261 (475)
+++.+.+ ..+||+.+++.++..++..++..+..||+++.+ +++.+.++.+++.+|||+++...+..+.
T Consensus 151 i~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (394)
T PRK11652 151 IGGLLTT----------LFGWRACYLFLLLLGAGVTFSMARWMPETRPAD--ARRTRVLASYRTLLSNRRFNCYLLMLIG 218 (394)
T ss_pred HHHHHHh----------ccChHHHHHHHHHHHHHHHHHHHHhCCccCccc--cchhHHHHHHHHHHcChHHHHHHHHHHH
Confidence 6655532 358999988877666555544445567643221 2222356778889999987766555444
Q ss_pred HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HhhcC
Q 011925 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAG---ILILP 338 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~---~~~~~ 338 (475)
..........+.+.|+.+..|.++.+.+.+.....++.++++++.++ +.||.++....+.....++... .....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (394)
T PRK11652 219 TLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR---PNKRFSTLMWQSVICCLLAGLLMWIPGWFG 295 (394)
T ss_pred HHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555667788888878888877776666556666666666544 3444322222222222222111 11111
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 339 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
..+.+.......+.+++.+...+.......+..+ |++| ...++.+....+|..+++.+.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 296 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAG--TAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccch--HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2244455556678888888888877777666665 5667 7888888888999999999888775
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=212.90 Aligned_cols=334 Identities=12% Similarity=0.019 Sum_probs=242.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhH
Q 011925 48 LLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETI 127 (475)
Q Consensus 48 ~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 127 (475)
|...+|.++|.+++|.+.+...+.++++..++|.++||.+.|+. +..++++.++..+++- ++ .+.....+
T Consensus 53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f-m~~gLilsai~nil~G-------fs--~s~~~~~~ 122 (448)
T COG2271 53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF-MAFGLILSAIVNILFG-------FS--PSLFLFAV 122 (448)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee-ehHHHHHHHHHHHHHh-------hh--hHHHHHHH
Confidence 44444448999999999999999999999999999999999874 7788888888765443 11 12222223
Q ss_pred HHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHH
Q 011925 128 SYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY 207 (475)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (475)
.+. +.+...+...+|....+..+.+ ++|||+..++.+...++|+.+.+.+... ..+. ...+||..|+
T Consensus 123 l~~----lng~fQg~Gwpp~~~~i~~Wfs-r~eRG~~~siWn~shNiGGal~~~~~~l--a~~~------~~~~w~~~f~ 189 (448)
T COG2271 123 LWV----LNGWFQGMGWPPCARTITHWFS-RKERGTWWSIWNTSHNIGGALAPLVALL--AFFA------FHGGWRAAFY 189 (448)
T ss_pred HHH----HHHHHhcCCCcHHHHHHHHHcC-ccccCceEEEehhhhhcccchHHHHHHH--HHHH------hccchhHHHH
Confidence 333 6667777777888888888887 7899999999999999998887766622 2221 2458999999
Q ss_pred HHHHHHHHHHHHHhhccccccccc-------------c--cCCCcc-----hHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 011925 208 SSIFIGCCFVGIFLSRTEEPRLKM-------------G--LRGNSH-----ARISWAYWFKKILYYQVALVYMLTRLVVN 267 (475)
Q Consensus 208 ~~~~~~~i~~~~~~~~~~e~~~~~-------------~--~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (475)
+-++++++..++.++..||+++.. + ++++++ ...-.+.++|||..|.+.+.+++....-+
T Consensus 190 ~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~ 269 (448)
T COG2271 190 FPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRY 269 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 999888888877777766654210 0 001111 12245778999999999999999999999
Q ss_pred hhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhH-HHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 011925 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLK-AYYSAGGVLWVFCGAGILILPMNMSAFM 345 (475)
Q Consensus 268 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (475)
++..|.|.|+.+..|++...+.......-.+++.|.++.|++ +|+.+..| .+-++.++...++.+.+...+.++.+..
T Consensus 270 gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~ 349 (448)
T COG2271 270 GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLD 349 (448)
T ss_pred HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 999999999999999998877777777788899999998886 44432213 3344555555666566666565555655
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHH-HHHHHHHHHHHhccc
Q 011925 346 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQSYQSM 406 (475)
Q Consensus 346 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~i-g~~ig~~l~~~~~~~ 406 (475)
.++.+.+|+..-...-.......+..|++..| ++.|+.+++..+ |.+.++..++.+.+.
T Consensus 350 ~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaG--tA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 350 AILLFIIGFLIYGPQMLIGLAAAEFVPKKAAG--TATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccccHhhcc--chhchhhhHHHHhhHHhcCCcceeeEec
Confidence 55666666554444433444455678888888 999999999998 888887777776543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-24 Score=214.70 Aligned_cols=358 Identities=15% Similarity=0.094 Sum_probs=219.6
Q ss_pred CCCCccc-eehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH
Q 011925 19 QPVGRWS-VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (475)
Q Consensus 19 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~ 97 (475)
+|..+++ .....++.+..........++++.+.+|.|.|+.+.|++.+.+.+...+.+|+.|+++||+||||.++. +.
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~-~~ 85 (402)
T TIGR00897 7 QKIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMI-GL 85 (402)
T ss_pred HHcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH-HH
Confidence 4445444 345666667777777777789999998889999999999999999999999999999999999998544 44
Q ss_pred HHHHHHHHHh-cCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHH
Q 011925 98 VLVAVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (475)
Q Consensus 98 ~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~ 176 (475)
...+++.... .. ... ..+.+...+.+. +.+++.+....+..+.+.+..+ ++||+++++..+....+|.
T Consensus 86 ~~~~~~~~~~~~~-----~~~-~~~~~~l~~~~~----i~G~g~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~ 154 (402)
T TIGR00897 86 LLWCVGHAAFIVF-----GLG-HANYPLILLFYG----IRGLGYPLFAYSFLVWVVYNTK-QDNLSSAVGWFWAVYSIGI 154 (402)
T ss_pred HHHHHHHHHHHHH-----hcc-CccHHHHHHHHH----HHHcchHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHH
Confidence 4444443221 10 000 112222222222 5566666655555666667665 7889999999988888875
Q ss_pred -HHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC--CC-cchHHHHHHHHhchhH
Q 011925 177 -LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GN-SHARISWAYWFKKILY 252 (475)
Q Consensus 177 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~--~~-~~~~~~~~~l~~~~~~ 252 (475)
+.++.+++.+....+. ....|+..+... +..++.++..+|++++++++ ++ ++.++.+++++|||++
T Consensus 155 ~~~g~~~~~~l~~~~g~-----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (402)
T TIGR00897 155 GVFGSYYSSYAIPAFGE-----MNTLWSALAFVL-----TGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNV 224 (402)
T ss_pred HHHHHHHHHhcccccch-----HHHHHHHHHHHH-----HHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhH
Confidence 4555555444322110 122355443321 11222223334322211111 11 1223456778999998
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHH-HHHHHHHHHH
Q 011925 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYY-SAGGVLWVFC 330 (475)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~-~~~~~~~~~~ 330 (475)
+...+..++..........|.|.|+.+ .|.+..+.+.......++..++.+..+++ +|+++ |+.. ..+.....++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~--~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 225 LLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGW--MNTVRWFGGVGCGIF 301 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Confidence 877777777767777888899999855 78888776666666667788888877765 44443 3332 2222222222
Q ss_pred HHHHhhcC---CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 331 GAGILILP---MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 331 ~~~~~~~~---~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
...+...+ .++.+..++..++.|++.+...+.. ....+. +++++| ..+|+.+....+|+.++|.+.+.+.+
T Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~-~~~~~g--~~~g~~~~~~~lg~~~gp~i~g~l~~ 375 (402)
T TIGR00897 302 TLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLA-AVFPTL-APKHKG--AAMSVLNLSAGLSAFLAPAIAVLFIG 375 (402)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHhh-CcchhH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222111 2344444556677777776654432 333333 345677 88999999999999999988887653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-25 Score=218.97 Aligned_cols=352 Identities=11% Similarity=0.053 Sum_probs=208.8
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~ 104 (475)
........+...+.++...+++|.|+++. |+|+.++|++.++..+...+.+|++|+++||+||||+.++...+ .+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~-~~~~~ 90 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISG-LLVLF 90 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH-HHHHH
Confidence 33444455666676778889999999995 99999999999999999999999999999999999985443222 22221
Q ss_pred HHhcCCccCCccCCccchhhh-hHHHHHHHHHHHHHHhHhHhhhhhhhcccCCC-ccchhhHhhHHHHHHHHHHHHHHHH
Q 011925 105 SSVFGGCMPCRILSTSTLKVE-TISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAI 182 (475)
Q Consensus 105 ~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (475)
...+. .. ....... ...... ..++..+....+......++.++ +++|++..+.......+|..+++.+
T Consensus 91 ~~~~~--~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 160 (420)
T PRK09528 91 GPFFI--YV-----FAPLLQYNILLGAI---VGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFI 160 (420)
T ss_pred HHHHH--HH-----HHHHHHHHHHHHHH---HHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHH
Confidence 11110 00 0000000 000000 11222222222222222222221 2345556666667777888887777
Q ss_pred HHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---c-c--CCCcchHHHHHHHHhchhHHHHH
Q 011925 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-L--RGNSHARISWAYWFKKILYYQVA 256 (475)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~---~-~--~~~~~~~~~~~~l~~~~~~~~~~ 256 (475)
++.+. ..+|++.+++.+++.++..++.++..+|+++++ + + +++....+..++.+|||+++.+.
T Consensus 161 ~g~l~-----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 229 (420)
T PRK09528 161 AGILF-----------NINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLV 229 (420)
T ss_pred HHHHH-----------hcCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeeh
Confidence 66553 236788888777666665555544444432221 0 0 11112234456788899876655
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhc---ccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 011925 257 LVYMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~ 332 (475)
+...+..........++|.|+.+.. +.+..+.+.+..+..++..++.++.+++ +|+++ |+.+..+..+..++..
T Consensus 230 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~l~~~~~~ 307 (420)
T PRK09528 230 LYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGA--KNALLLAGTIMAVRII 307 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHH
Confidence 5444444444445556777765542 3444445555555555666666666654 34443 5666666666666555
Q ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH-HHHHHHHHHHHHHHHHHHhcc
Q 011925 333 GILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~ig~~ig~~l~~~~~~ 405 (475)
...+. ++++.++....+.+++.+...+....+..+..|+|.++ ..++. +++..++|..+++.+.+.+.+
T Consensus 308 l~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 308 GSGFA--TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA--TIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred HHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee--eeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 35566666677888888777777777777777888887 55544 567788888888888777654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-24 Score=212.01 Aligned_cols=341 Identities=13% Similarity=0.078 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccC
Q 011925 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (475)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~ 117 (475)
..........|.+.++.|.|+.+.|++.++..+...+.+|+.|+++||+||||.++ .+.+..+++..+... .
T Consensus 8 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-~~~~~~~~~~~~~~~-------~ 79 (399)
T TIGR00893 8 LDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLA-VFIVIWGVFTGLQAF-------A 79 (399)
T ss_pred HHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeH-HHHHHHHHHHHHHHH-------H
Confidence 33345555566655666999999999999999999999999999999999999854 444444444332221 1
Q ss_pred CccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 011925 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (475)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (475)
.+.+...+.. .+.+++.+...++..+++.|..+ +++|++..++......+|..+++.+.+.+..
T Consensus 80 --~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------- 143 (399)
T TIGR00893 80 --GAYVSLYILR----VLLGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWILI--------- 143 (399)
T ss_pred --cCHHHHHHHH----HHHHHHHHhhhhHHHHHHHHhCC-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---------
Confidence 1222222222 26778888888888889999886 7889999999999999998888877766543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-----C---------------CCcchHHHHHHHHhchhHHHHHH
Q 011925 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-----R---------------GNSHARISWAYWFKKILYYQVAL 257 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-----~---------------~~~~~~~~~~~l~~~~~~~~~~~ 257 (475)
..+||+.+++.+++.++..++.++..+|++++++. + ++++..+..++.+|+|+++...+
T Consensus 144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
T TIGR00893 144 -HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLAL 222 (399)
T ss_pred -hCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHH
Confidence 34799998887777666655555555554321100 0 00112234567889999888888
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHH--HH-HHHHHH
Q 011925 258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGV--LW-VFCGAG 333 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~--~~-~~~~~~ 333 (475)
..++..........++|.|+++..|.++.+.+.......++.+++.++.+++ +|+++|.+........ .. ......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (399)
T TIGR00893 223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL 302 (399)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Confidence 8888888888889999999998888888777777777777788888887775 5555541111111111 11 111111
Q ss_pred HhhcC-CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 011925 334 ILILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 406 (475)
Q Consensus 334 ~~~~~-~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~ 406 (475)
..... .++.+.......+.+.+.+ ..+....+..+..|++++| ..+|+.+...++|..+++.+.+.+.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 303 MFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAG--LTGGLINSLGNLGGIVGPIVIGAIAAT 373 (399)
T ss_pred HHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHH--HHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence 11111 1233333333333334444 6677778888888999999 899999999999999999998887643
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-24 Score=210.34 Aligned_cols=339 Identities=10% Similarity=-0.008 Sum_probs=227.6
Q ss_pred ehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHH
Q 011925 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (475)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~ 106 (475)
..+.++.+...+...+....++...+|.+.++.+.+++.+.+.+...+.+|+.|+++||+||||+++. +....+++.+.
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~-~~~~~~~~~~~ 84 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFI-ANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHH-HHHHHHHHHHH
Confidence 35667777777766666666677777779999999999999999999999999999999999998544 44444444332
Q ss_pred hcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011925 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (475)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (475)
... .+ +. .+.+ .+.+++.+...+...++++|+.+ ++||++++++......+|.++++.+++.+
T Consensus 85 ~~~--~~-------~~---~~~r----~l~G~~~a~~~pa~~a~i~~~~~-~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 85 MLF--GI-------HP---LLAY----GLVGIGAAAYSPAKYGILTELLP-GEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred HHH--HH-------HH---HHHH----HHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 220 01 11 1222 26788888888888999999997 78999999999998888999998888877
Q ss_pred HHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC-C-----cchHHHHHHHHhchhHHHHHHHHH
Q 011925 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-N-----SHARISWAYWFKKILYYQVALVYM 260 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~-~-----~~~~~~~~~l~~~~~~~~~~~~~~ 260 (475)
.. ..|+..+.+.+...++.. +..+..||++.++++++ + ++.++.+++++|||.++.......
T Consensus 148 ~~-----------~~~~~~~~i~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (393)
T PRK11195 148 AD-----------PHAEAALAVCALIYLLAA-LFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTT 215 (393)
T ss_pred HH-----------HHHHHHHHHHHHHHHHHH-HHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 53 236666655544333332 23345565432211111 1 112234567788887665544444
Q ss_pred HHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcC
Q 011925 261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP 338 (475)
Q Consensus 261 ~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~ 338 (475)
+.+.........+|.|+++.+|.++.+.+.......++.++++++.+++ .+|. ++.+..+.. ..+....+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l---~~~~~~~~~~~~g~~-~~~~~~~~~~-- 289 (393)
T PRK11195 216 LFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARL---VTLETVLRVLPAGIL-MGLVVLLMAL-- 289 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH---hcCCcccchHHHHHH-HHHHHHHHHH--
Confidence 4444444556667788888889998888888887788888888886654 3332 445555543 2332222222
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCC-ccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL-SGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 339 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
.++.+...+..++.|++.+...+......++..+++. +| ...++.++.++++..++..+.+..
T Consensus 290 ~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g--~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 290 QHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAG--HSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccch--hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2344545566668888888877666666666555443 56 889999999999999998877655
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-24 Score=212.11 Aligned_cols=345 Identities=11% Similarity=0.020 Sum_probs=218.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcC
Q 011925 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (475)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~ 109 (475)
++..+...+...+..+-+|...++.|.+..+.++..+++.+..++.+++.|+++||+||||.++ .+....+++..+...
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLI-TGALIFTLACAATLF 100 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHH-HHHHHHHHHHHHHHH
Confidence 3333334444445555566655666999999999999999999999999999999999999754 445555554433221
Q ss_pred CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
. .+... +...++ +.+++.+.......+...|..+ +++|++..++......+|..+++.+++.+..
T Consensus 101 -------a--~~~~~-l~~~r~---l~Gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~- 165 (413)
T PRK15403 101 -------T--TSMTQ-FLIARF---IQGTSICFIATVGYVTVQEAFG-QTKGIKLMAIITSIVLVAPIIGPLSGAALMH- 165 (413)
T ss_pred -------c--CCHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1 12222 233332 5666555444444566777765 6788898888888888888888777766542
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC-CCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHh
Q 011925 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNV 268 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (475)
..+||+.|++.++++++..++.++..||++++++++ ++.+..+.+++++|||+++...+...+.......
T Consensus 166 ---------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~ 236 (413)
T PRK15403 166 ---------FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMS 236 (413)
T ss_pred ---------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 358999999888777766655555567753322111 1123355778899999999877777777666777
Q ss_pred hhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh---cCCchHHH
Q 011925 269 SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI---LPMNMSAF 344 (475)
Q Consensus 269 ~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 344 (475)
...+.|.|+++..|.++.+.++.......+.++++.+.+++ ++..+ ++..........++...... ...++.+.
T Consensus 237 ~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~ 314 (413)
T PRK15403 237 WVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTE--PRFIWRAVPIQLVGLALLIVGNLLWPHVWLW 314 (413)
T ss_pred HHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 77888999999889998877776655556666666655442 22221 22221111111222111111 11233333
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 345 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 345 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.++...+.++|.+...+......... .....| ...++.++.+..+...++...+.+.
T Consensus 315 ~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G--~a~a~~~~~~~~~~~~~~~~~g~~~ 371 (413)
T PRK15403 315 SVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKG--TVSASLNMVILMVMAVSVEIGRWLW 371 (413)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888887666433221 122246 7888888888888888888777663
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=211.64 Aligned_cols=329 Identities=13% Similarity=0.065 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhcc-----CCcchhHHHHHHHHHHHHHHhcCCccCCc
Q 011925 41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (475)
Q Consensus 41 ~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~-----Grr~~~l~~~~~~~~~~~~~~~~~~~p~~ 115 (475)
...+..+|.+.+|.|+|.+++|+.... .+...+ .|++|+++||+ ||||+|++.+.+..++....+.. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~--~~-- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF--LV-- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc--CC--
Confidence 455667788888889999999999766 444454 99999999997 99999887777776666433321 11
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 011925 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (475)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 195 (475)
+..+.+.....+. +.+.+.+...+++.++++|..+ +|||+++.+++..+..+|.++++.++..+....+...
T Consensus 79 --~~~~l~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~- 150 (356)
T TIGR00901 79 --PSTDLPLLAGLAF----LIAFFSATQDIALDAWRLEILS-DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT- 150 (356)
T ss_pred --cchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCC-HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-
Confidence 1122222222222 4556677788999999999996 7899999999999999999998888877765443111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC--CCcchHHHHHHHHhchh---HHHHHHHHHHHHHHHHhhh
Q 011925 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKIL---YYQVALVYMLTRLVVNVSQ 270 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 270 (475)
...++||..+++.++..++..+..++..||+++.++++ ++++.++.+++++|||. ++...+..++.........
T Consensus 151 -~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (356)
T TIGR00901 151 -GLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAAT 229 (356)
T ss_pred -ccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 12456999998888777666655555567753321111 11223456788888875 5666666666667777888
Q ss_pred HHHHHHHhhhcccccchhhhHhHHHH-HHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC--C-------
Q 011925 271 AYLAFYVINDLRMGQSAKALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--M------- 339 (475)
Q Consensus 271 ~~~~~y~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~--~------- 339 (475)
.++|.|+++ .|++..+.+....... ++.+++.++.+++ +|+++ |+.+..+..+..++...+.+.. .
T Consensus 230 ~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (356)
T TIGR00901 230 VLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNI--LYALLLFGIVQALTNAGFVWLASNGHHDGITF 306 (356)
T ss_pred HHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 999999987 7888887776555433 4556777776664 44444 4555555555555444333321 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHH
Q 011925 340 NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLD 389 (475)
Q Consensus 340 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 389 (475)
++.+....+.++.+++.+...+....+..+..|++++| ..+|+.+...
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~ 354 (356)
T TIGR00901 307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGA--TQMALLSSLS 354 (356)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccH--HHHHHHHHHH
Confidence 23455555667789999999999999999999999999 8888766544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-24 Score=213.45 Aligned_cols=350 Identities=12% Similarity=0.035 Sum_probs=225.7
Q ss_pred CCCccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHH
Q 011925 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (475)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~ 99 (475)
+..|.....+.++-+.... .....+.+|...+|.|+|..+.|++.+++.+...+.+|+.|+++||+||||++ ..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l-~~~~~l 83 (393)
T PRK09705 6 PLNFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSV-AISLLL 83 (393)
T ss_pred chHHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHH-HHHHHH
Confidence 3344444445555433332 24566788888888899999999999999999999999999999999999984 555555
Q ss_pred HHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHH
Q 011925 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
.+++.+.... .| +... +...+ .+.+++.+...+...+++.+..+ ++|+++.+....+...|..++
T Consensus 84 ~~~~~~~~~~--a~-------~~~~-ll~~r---~l~Gig~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 84 IAVGALMREL--YP-------QSAL-LLSSA---LLGGVGIGIIQAVMPSVIKRRFQ--QRTPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred HHHHHHHHHH--Cc-------chHH-HHHHH---HHHHhHHHHHhhhhhHHHHHHcc--ccchhHHHHHHHHHHHHHHHH
Confidence 5555543321 11 2222 23333 26778888777777777777653 679999999888888888888
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHH
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVY 259 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (475)
+.+++.+.+. ..+||+.+.+.++..++.....+...++++++ +++++. ..++.+|+|+.+...+..
T Consensus 149 ~~~~~~l~~~---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~l~~~~ 214 (393)
T PRK09705 149 AAITPWLVQH---------SETWYQTLAWWALPAVVALFAWWWQSAREVAS-SHKTTT----TPVRVVFTPRAWTLGVYF 214 (393)
T ss_pred HHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-ccCCCc----CCcccccCHhHHHHHHHH
Confidence 8777666532 13788876655444443333322222221111 111111 123455677777666666
Q ss_pred HHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCC
Q 011925 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPM 339 (475)
Q Consensus 260 ~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~ 339 (475)
.+..........|.|.|+.+ .|.+..+.+.......++.+++.++.+++.++.+| |+....+..+..++...+...+.
T Consensus 215 ~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~-~~~~~~~~~l~~~~~~~~~~~~~ 292 (393)
T PRK09705 215 GLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDR-RKLLMLALVLQLVGFCGFIWLPL 292 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHccc
Confidence 66666777888999999986 68888878877777788888888887765332222 55566666665555544433342
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc-cCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccC
Q 011925 340 NMSAFMYVLAIFVGIANALMMVTGISMQNVLV-GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS 407 (475)
Q Consensus 340 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~ 407 (475)
+.. .. ...+.|++.+...+.......+.. +++++| ..+++.+...+++..+++.+.+.+.+..
T Consensus 293 ~~~-~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~~~~gp~~~G~l~~~~ 356 (393)
T PRK09705 293 QLP-VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAG--KLVAFMQGIGFIIAGLAPWFSGVLRSIS 356 (393)
T ss_pred hHH-HH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 22 234557777766665554444443 445667 7888888888888888888888776443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-24 Score=210.77 Aligned_cols=344 Identities=11% Similarity=0.010 Sum_probs=218.1
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
+++.....+..+...+...+..+++|.+.++. |.|+.++|++.+++.+...+.+|+.|+++||+||||.+ ..+.+..+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l-~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV-VFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH-HHHHHHHH
Confidence 34455677777788888888999999988765 99999999999999999999999999999999999984 44444444
Q ss_pred HHHHH-hcCCccCCccCCccc--hhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHH
Q 011925 102 VSFSS-VFGGCMPCRILSTST--LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (475)
Q Consensus 102 ~~~~~-~~~~~~p~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (475)
++... .+. . ...+.. ..+.++.. ..+.+++.+...+...++..+..+ +++|+++.++.......|.++
T Consensus 93 ~~~~~~~~~---~--~~~~~~~~~~~~l~~~---r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~ 163 (399)
T PRK05122 93 LSGLLYLLA---G--LLAAWPVLSLLLLLLG---RLLLGIGESLAGTGSILWGIGRVG-ALHTGRVISWNGIATYGALAI 163 (399)
T ss_pred HHHHHHHHh---h--hhhccchhHHHHHHHH---HHHHHhhHHhhcchHHHHHHhhcC-hhhhccchhhhhhhhhHHHHH
Confidence 43222 221 0 011100 11111222 236778888777777777788775 788999999888888888888
Q ss_pred HHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHH
Q 011925 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALV 258 (475)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (475)
++.+++.+.+ ..+|++.+++..+++++..+.. ...||++ ++++++ +++++.+|+ .+.....
T Consensus 164 g~~l~~~l~~----------~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~----~~~~~~~~~--~~~~~~~ 224 (399)
T PRK05122 164 GAPLGVLLYH----------WGGLAGLGLLIMLLALLGLLLA-RPRPAVP--PVKGER----LPFRRVLGR--VWPYGMG 224 (399)
T ss_pred HHHHHHHHHH----------cccHHHHHHHHHHHHHHHHHHH-hcCCCCC--CCCccc----hhHHHHHHH--HHHHHHH
Confidence 7777766653 3478888776655544433332 2222211 111111 123333332 1222222
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 011925 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~ 337 (475)
..+..........+.+.|..+. |.+. .+.......++.+++.++.+++ +|.++ |+.+..+..+..++.......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T PRK05122 225 LALASIGFGTIATFITLYYAAR-GWDG--AALALTLFGVAFVGARLLFGNLINRLGG--LRVAIVSLLVEILGLLLLWLA 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-cccc--chHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHh
Confidence 2333344455667788887653 5532 2333344455666666665554 33332 556666666666655444443
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 338 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 338 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+ +.+..++..++.|++.+...+.......+..+++++| ..+++++...++|.++++.+.+.+.
T Consensus 300 ~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~ 362 (399)
T PRK05122 300 P--SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRG--AALGAYSVFLDLSLGITGPLAGLVA 362 (399)
T ss_pred c--cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 4455556677888988887776555555667888888 8999999999999999888877765
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-25 Score=223.34 Aligned_cols=348 Identities=13% Similarity=0.048 Sum_probs=247.0
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHh
Q 011925 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (475)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~ 107 (475)
...++.+...+.....+..+|.+.+|.|.++.+.+++.+.+.+...+..|+.|+++||+||||.+ +.+.+...++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLF-LISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH-HHHHHHHHHHHHHH
Confidence 34456667777788888889999888899999999999999999999999999999999999875 44555555554333
Q ss_pred cCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 011925 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (475)
Q Consensus 108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (475)
.. . .+... +...+ .+.+++.+...+...+++.+..+ +++|++..++......+|..+++.+++.+.
T Consensus 85 ~~-------~--~~~~~-l~~~~---~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 85 GV-------A--PNLEL-MIIFR---VIQGFGGGPLIPLSFSTLLNIYP-PEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred hC-------c--CCHHH-HHHHH---HHHHhhhhhHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 21 1 12222 22233 26777878788888889999886 789999999988888888888777766554
Q ss_pred HhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC-----------------------Cc---ch--
Q 011925 188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-----------------------NS---HA-- 239 (475)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~-----------------------~~---~~-- 239 (475)
. ..+||+.+++.+.++++..++.++..||++++++++. +. +.
T Consensus 151 ~----------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (485)
T TIGR00711 151 E----------NYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE 220 (485)
T ss_pred c----------CcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence 2 4589999888777666665555555555322111000 00 00
Q ss_pred ----------------------HHH--HHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHH
Q 011925 240 ----------------------RIS--WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII 295 (475)
Q Consensus 240 ----------------------~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~ 295 (475)
+++ -.+++|||+++...+..++..........++|.|+++..|.++.+.+......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~ 300 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPV 300 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000 12467888877777777777777777888999999998899988888777777
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh-c-CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q 011925 296 YICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI-L-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVG 372 (475)
Q Consensus 296 ~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~ 372 (475)
.++.+++.++.+++ +|.++ |+.+.++..+..++...+.+ . +..+.+......++.|++.+...+.......+..|
T Consensus 301 ~~~~~~~~~~~g~l~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~ 378 (485)
T TIGR00711 301 GLAPMLSSPIAGRMGDKIDP--RKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLP 378 (485)
T ss_pred HHHHHHHHHHHHHHHhhcCc--HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77788888887765 44433 56666777766666555442 2 22344445556778899998877666666566678
Q ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 373 EDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 373 ~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
++++| ...++.++.+++|+.+|+.+.+.+.
T Consensus 379 ~~~~g--~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 379 PHKIA--RGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred HHHHh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 8899999999999999988776654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=214.06 Aligned_cols=360 Identities=13% Similarity=0.030 Sum_probs=230.9
Q ss_pred CCCCccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHH
Q 011925 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (475)
Q Consensus 19 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~ 98 (475)
++.+++......++.+...+.........|.+.++.|+|..+.|++.++..+...+.+|+.|+++||+||||++++ +.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~-~~~ 85 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT-SIV 85 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHH
Confidence 3345666677778888888888888888888777779999999999999999999999999999999999998554 444
Q ss_pred HHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHH
Q 011925 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (475)
Q Consensus 99 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (475)
..+++..+... . .+.+.... .+ .+.+++.+...+...+++.|..+ +++|++..++...+..+|..+
T Consensus 86 ~~~~~~~~~~~--~-------~~~~~l~~-~~---~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 86 LFSAGTLACGF--A-------PGYITMFI-AR---LVIGIGMGGEYGSSAAYVIESWP-KHLRNKASGLLISGYAVGAVV 151 (405)
T ss_pred HHHHHHHHHHH--h-------ccHHHHHH-HH---HHHHhhhhhhhHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHH
Confidence 44444433221 1 12222222 22 26778888888888888999886 688999999999999999988
Q ss_pred HHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-CCCcchHHHHHHHHhc--------
Q 011925 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKK-------- 249 (475)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~l~~~-------- 249 (475)
++.+...+.... ..+||+.+.+.++..++..+ .....||+++.+++ +++++.++..++..++
T Consensus 152 ~~~l~~~l~~~~--------~~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (405)
T TIGR00891 152 AAQVYSLVVPVW--------GDGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIV 222 (405)
T ss_pred HHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhh
Confidence 887776665432 13599988776554444433 33445664321111 1000000111110000
Q ss_pred -----------hh----HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHh
Q 011925 250 -----------IL----YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTG 313 (475)
Q Consensus 250 -----------~~----~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 313 (475)
++ +........+..........++|.|+.++.|.+..+.+.+.....++.+++.++.+++ +|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g 302 (405)
T TIGR00891 223 MTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLG 302 (405)
T ss_pred hhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 01 1112222233333444566788999988889988877777777777888888887765 4444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHH
Q 011925 314 QRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 393 (475)
Q Consensus 314 ~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~ 393 (475)
+ |+.+.++............... ++.+...+...+.++..+...+....+..+..|++++| ..+|+.+...++|.
T Consensus 303 ~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~ 377 (405)
T TIGR00891 303 R--RKAYVCSLLAGQLLIIPVFAIG-ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA--AGLGFTYQLGNLGG 377 (405)
T ss_pred c--hhhhHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhH--HHhhHHHHHHHHHH
Confidence 3 4555555444322222222222 34344344445555555444555556667778888888 88898888889999
Q ss_pred HHHHHHHHHhcccC
Q 011925 394 GIAVYVLQSYQSMS 407 (475)
Q Consensus 394 ~ig~~l~~~~~~~~ 407 (475)
.+++.+.+.+.+..
T Consensus 378 ~~g~~~~g~l~~~~ 391 (405)
T TIGR00891 378 ALAPIIGALLAQRL 391 (405)
T ss_pred HHHHHHHHHHHHhc
Confidence 99998888776443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-23 Score=212.57 Aligned_cols=340 Identities=10% Similarity=0.006 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCc
Q 011925 40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (475)
Q Consensus 40 ~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 119 (475)
.....+++|.+.+|.|+|..+.|++.+++.+...+++++.|+++||+|||+.. ..+.+..+++.++.. ..
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~-~~~~~~~~~~~~~~~-------~~-- 121 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS-AFLLMLTAPAVFCMS-------LV-- 121 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHHHHH-------Hh--
Confidence 34455566777777799999999999999999999999999999999999874 445555555543222 11
Q ss_pred cchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchH
Q 011925 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
.+... +...+ .+.+++.+.. .+...+++++.+ +++|+++.++.+....+|..+++.+.+.+...+...+ .+..
T Consensus 122 ~s~~~-l~~~r---~l~G~~~~~~-~~~~~~i~~~~~-~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~-~~~~ 194 (476)
T PLN00028 122 SSATG-FIAVR---FFIGFSLATF-VSCQYWMSTMFN-GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG-APSF 194 (476)
T ss_pred cCHHH-HHHHH---HHHHHHHHhh-HHHHHHHHHhcC-hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccch
Confidence 12222 22222 2455555433 344456777776 7789999999887777787777666654443321110 0113
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccc--c-c-C---CCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHH
Q 011925 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--G-L-R---GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 272 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~--~-~-~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (475)
.+||+.+++.+++.++..++.++..+++++.+ + + + ++.+..+.+++.++++++|.+.+.+++..........+
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNI 274 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhH
Confidence 58999999988877766655555444322110 0 0 0 11122345667788888877766665555555567788
Q ss_pred HHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhh----HH-HHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 011925 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL----KA-YYSAGGVLWVFCGAGILILPMNMSAFMY 346 (475)
Q Consensus 273 ~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~----k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (475)
.|.|+.+..|++....+.+.....+++.++.++.+++ +|+++|. |+ ...+...+..++...+.. .++.+...
T Consensus 275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~--~~~~~~~~ 352 (476)
T PLN00028 275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR--ANSLGAAI 352 (476)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999988889988877777777778888888888875 6666543 12 222222222222222211 22333333
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 347 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
..+.+.+++.+...+.......+. ++|+.| ..+|+.+....+|+.+++.+.+
T Consensus 353 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g--~~~g~~~~~g~lg~~i~~~l~~ 404 (476)
T PLN00028 353 VVMILFSIFVQAACGATFGIVPFV-SRRSLG--VISGLTGAGGNVGAVLTQLLFF 404 (476)
T ss_pred HHHHHHHHHHHHhhhhhcccCccc-Chhhch--hhhhhhhccccHHHHHHHHHHH
Confidence 444555555544444344444433 346777 8888888888888888887764
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-24 Score=210.09 Aligned_cols=348 Identities=10% Similarity=0.059 Sum_probs=214.0
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~ 100 (475)
..+......++.+...+..++..+.+|.++++ .|.|+.++|++.+++.+...+.+|+.|+++||+||||+++ .+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~-~~~~~~ 91 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL-QGMLAC 91 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH-HHHHHH
Confidence 34444455566677777777888889988765 4999999999999999999999999999999999999854 444443
Q ss_pred HHHHHHh-cCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHH
Q 011925 101 AVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 101 ~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
.++.... .....| .....+... +...+ .+.+++.+...++..+++.+..+ +|+|+++.++...+...|..++
T Consensus 92 ~~~~~~~~~~~~~~--~~~~~~~~~-l~~~r---~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~a~~~~~~~~~~g~~~g 164 (392)
T PRK12382 92 GLAGLAYLLAAILP--VSAPFKFAL-LVVGR---LILGFGESQLLTGALTWGLGLVG-PKHSGKVMSWNGMAMYGALAAG 164 (392)
T ss_pred HHHHHHHHhhhccc--cchhHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHhhCC-ccccchhhhHHHHHHHHHHHHH
Confidence 3332211 100011 000111122 22222 26777777776667777888876 7899999999888888888887
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHH
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVY 259 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (475)
+.+++.+.. ..+|++.+.+..+..++.... ....||.+. +++++.+.++..+...+ + .+..
T Consensus 165 ~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~-~-----~~~~ 225 (392)
T PRK12382 165 APLGLLLHS----------HFGFAALALTTMVLPLLAWAF-NGTVRKVPA--HAGERPSLWSVVGLIWK-P-----GLGL 225 (392)
T ss_pred HHHHHHHHh----------ccChHHHHHHHHHHHHHHHHH-HHhccCCCC--CcccCchHHHHHHHHHH-h-----HHHH
Confidence 777665542 347888766544433333222 122233211 11112222222222211 1 1122
Q ss_pred HHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC
Q 011925 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP 338 (475)
Q Consensus 260 ~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~ 338 (475)
.+..........+.|.|+.+. +.++ .+.......++.+++.++.+++ +|.++ |+.+..+..+..++.....+.+
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~~ 300 (392)
T PRK12382 226 ALQGVGFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGG--VKVAIVSLLVETVGLLLLWLAP 300 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeehHHHHHHHHHHHHHHHHcc
Confidence 222334445567778887653 5543 2333333445556666665554 33333 5566666666666655544433
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 339 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
+.+..++..++.|++.+...+.......+..+++++| ..+|+.+....+|.++++.+.+.+.+
T Consensus 301 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 301 --TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRG--TALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred --cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677888888877776666666778888888 88999999999999999988877653
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-24 Score=208.23 Aligned_cols=339 Identities=12% Similarity=-0.026 Sum_probs=224.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCC
Q 011925 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (475)
Q Consensus 31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~ 110 (475)
++.+......++..+++|.|++|.|.|..++|++.+++.+...+.+|++|.++||+|||+.......+...+......
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~-- 88 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS-- 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH--
Confidence 445555666688889999999999999999999999999999999999999999999855422222111111111111
Q ss_pred ccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011925 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (475)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (475)
. . ..+.+...+.+. +.+.+.+...+...++..+. ++||++..+.......+|.++++.+++.+.+
T Consensus 89 -~---~--~~~~~~l~~~~~----l~~~~~~~~~p~~~al~~~~---~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~-- 153 (382)
T TIGR00902 89 -A---G--AHNAWLLFIAIG----LFALFFSAGMPIGDALANTW---QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG-- 153 (382)
T ss_pred -H---h--hhhHHHHHHHHH----HHHHHHccchhHHHHHHHHH---HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0 0 112333222222 45555555555555655432 4677888888888888888888877777653
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-CCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhh
Q 011925 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (475)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (475)
..+||..+.+......+.. +.+...|++++++++ +++.+..+..++++|||+++...+..++........
T Consensus 154 --------~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~ 224 (382)
T TIGR00902 154 --------MFDEQNILAILTAGLAFML-IGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY 224 (382)
T ss_pred --------HcChhHHHHHHHHHHHHHH-HHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 4589988877654433222 222323331111111 111122345678899999988888778777888888
Q ss_pred hHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 011925 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYV 347 (475)
Q Consensus 270 ~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (475)
.++.|.|+++ .|.++.+.+.+.....++.++..++.+ |+.||+ |+.+.++.+...+....+.+. ++.+.++.
T Consensus 225 ~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~---~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 298 (382)
T TIGR00902 225 YGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSN---KLFQNCSARDLLLISAIACVGRWAIIGAI--EAFPLIFL 298 (382)
T ss_pred HHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhH---HHHhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHH
Confidence 8999999976 799988777765555555555555544 445554 677778888877776665543 46677777
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHH-HHHHHHHHHHHHHHHHhc
Q 011925 348 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS-FLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 348 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~ig~~ig~~l~~~~~ 404 (475)
...+.|+..+...+....+.++. |+++++ ..+++++ ....+|..+|+.+.+.+.
T Consensus 299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~--~~q~~~~~~~~g~g~~~g~~~~G~l~ 353 (382)
T TIGR00902 299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIA--KLQALYNALAMGGLIAIFTAFAGFIY 353 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998888888876 777777 6677765 345566777776666654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=212.30 Aligned_cols=345 Identities=10% Similarity=0.052 Sum_probs=220.3
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~ 104 (475)
........+..........+++|.|+++. |+|+.++|++.+++.+...+.+|+.|+++||+||||.. +.+.+..+++.
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~-~~~~~~~~~~~ 87 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM-LLAITAFASGF 87 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH-HHHHHHHHHHH
Confidence 44555677777888888889999999876 99999999999999999999999999999999998874 44555554544
Q ss_pred HHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHH
Q 011925 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (475)
Q Consensus 105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~ 184 (475)
.... +. .+.+...+.+. +.+.+.+.......++..|..+ +++|++..++.+...++|..+++.+++
T Consensus 88 ~~~~-------~~--~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 88 IAIP-------LV--NNVTLVVLFFA----LINCAYSVFSTVLKAWFADNLS-STSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHH-------HH--hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 11 11222111121 3444555555556777888876 778999999999999999888887776
Q ss_pred HHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHH
Q 011925 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL 264 (475)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 264 (475)
.+. ..+|+..+.+.+++.++..++..+..||++++++ +++++ ....++.+|||+++...+..++...
T Consensus 154 ~l~-----------~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (395)
T PRK10054 154 LLV-----------MQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIA-TETGS-VWSPSVLLQDKALLWFTCSGFLASF 220 (395)
T ss_pred HHH-----------HhccCcHHHHHHHHHHHHHHHHHHHHhccccccc-cchhh-hhhhhhhccCceehHHHHHHHHHHH
Confidence 653 2378888887766665554444444444322211 11111 2233678899998877766666665
Q ss_pred HHHhhhHHHHHHHhhh--cccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCc
Q 011925 265 VVNVSQAYLAFYVIND--LRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMN 340 (475)
Q Consensus 265 ~~~~~~~~~~~y~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~~~ 340 (475)
.......+.+.|.... .+.++...+.......+......+. .+++.||. |+.+..++.+..++...+.+. .+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~ 296 (395)
T PRK10054 221 VSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYS---VGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-GN 296 (395)
T ss_pred HHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhH---HHHHHccCCchhHHHHHHHHHHHHHHHHHHc-ch
Confidence 5555556677776543 2333333333333322222222222 34555554 555666666666665444432 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 341 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
+.+...+...+.++|.+...|.......+..|++.+| .+++..+ ...+|.++|+.+.+.+.+
T Consensus 297 ~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~--~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 297 SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKA--SYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccce--ehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444556677888888877777777777888888888 6677655 345677777777666643
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=209.70 Aligned_cols=363 Identities=10% Similarity=0.060 Sum_probs=206.6
Q ss_pred ceehccccchhHHHHHHHHHHHHHHHHHHcC---CChhH---HHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHH
Q 011925 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIG---LSPRG---AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g---~s~~~---~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~ 98 (475)
....-.++.+....+........|...++.+ .+..+ .+.+.+...+...++++++|+++||+||||. +..+..
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~-l~~~~~ 101 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS-MLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHH
Confidence 3334445666666666665444555545543 45554 4445556666666999999999999999998 455555
Q ss_pred HHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHH
Q 011925 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (475)
Q Consensus 99 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (475)
.++++..+... .|. .. .. .......+.+...+.|++.+...+...+++.|..| +++|++..+....+...|.++
T Consensus 102 ~~~~~~~~~~~--~~~-~~-~~-~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p-~~~rg~~~~~~~~~~~~G~~~ 175 (432)
T PRK10406 102 MMCFGSLVIAC--LPG-YE-TI-GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV-EGRKGFYASFQYVTLIGGQLL 175 (432)
T ss_pred HHHHHHHHHhh--cCC-ch-hH-HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC-CCcccHHHHHHHHHHHHHHHH
Confidence 55555443321 221 00 00 00111112222237788888888888899999987 788999988888887777777
Q ss_pred HHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHH
Q 011925 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALV 258 (475)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (475)
+..+...+.....+.. ...++||+.|++.++++++..++ ....||+++.++ ++.+.+.++++++|||+.+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~--~~~~gWr~~F~i~~~~~ll~~~~-~~~~~e~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 250 (432)
T PRK10406 176 ALLVVVVLQQTLEDAE--LREWGWRIPFALGAVLAVVALWL-RRQLDETSQQET--RALKEAGSLKGLWRNRRAFIMVLG 250 (432)
T ss_pred HHHHHHHHHHhCCHHH--HhccchHHHHHHHHHHHHHHHHH-HhcCCCCchHHH--hhhcccccHHHHHhhHHHHHHHHH
Confidence 7665544433221100 01469999999877766655433 344566432211 111123357788899887765554
Q ss_pred HHH-HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH-HHh
Q 011925 259 YML-TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA-GIL 335 (475)
Q Consensus 259 ~~~-~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~-~~~ 335 (475)
..+ .....+....|+|.|+.+..|.+..+.+....+..+...++.++.+++ +|+++ |+.+.++..+..+... ...
T Consensus 251 ~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~gr--r~~~~~~~~~~~~~~~~~~~ 328 (432)
T PRK10406 251 FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGR--RTSMLCFGSLAALFTVPILS 328 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHHHHHH
Confidence 443 355667788999999988888887666655555555556666666654 44444 4444444333222221 111
Q ss_pred hcC-CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHH-HHHHHHHHHHHHh
Q 011925 336 ILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDK-MSCGIAVYVLQSY 403 (475)
Q Consensus 336 ~~~-~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-ig~~ig~~l~~~~ 403 (475)
... .++.+..+....+..++.+...+....+..+.+|++.+| ...|+.+...+ +.+...+.+.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~--t~~g~~~~~g~~~~g~~~p~~~~~l 396 (432)
T PRK10406 329 ALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRA--LGVGLSYAVANALFGGSAEYVALSL 396 (432)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccc--hhhhHHHHHHHHHHHhHHHHHHHHH
Confidence 111 122232222222222333333344556677788888888 66776544433 3344455555543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-23 Score=208.01 Aligned_cols=358 Identities=11% Similarity=-0.013 Sum_probs=229.8
Q ss_pred ehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHH
Q 011925 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (475)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~ 106 (475)
....+..+...+.......++|.+.++.|+|+.+.|++.+.+.+...+.+|+.|+++||+||||. +..+....+++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~-l~~g~~~~~~~~~l 107 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-IITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHH
Confidence 34444455566666677778888766669999999999999999999999999999999999998 55566666666543
Q ss_pred hcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011925 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (475)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (475)
.. +... ..+... +...+ .+.++|.+..++..++++.+..+ +++|.+..+..+....+|..+++.++.++
T Consensus 108 ~~----~~~~--a~~~~~-ll~~r---~l~G~g~g~~~~~~~~~v~~~~~-~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 108 FW----PAAE--IMNYTL-FLVGL---FIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HH----HHHh--cCCHHH-HHHHH---HHHHHHHHHHHhhHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0000 112222 22233 26788889898998888888643 56666567777788888888888887665
Q ss_pred HHhh-cc--------C------Cccc-hHHHHHHHHHHHH-HHHHHHHHHHhhcccccccccccC-CCcchHHHHHHHHh
Q 011925 187 FSVS-TA--------K------THAD-LENQYRWIAYSSI-FIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFK 248 (475)
Q Consensus 187 ~~~~-~~--------~------~~~~-~~~~~~~~~~~~~-~~~~i~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~l~~ 248 (475)
.... +. . +... ...+||++++... +..++..++.+...||.+.+++++ ++.+..+..++++|
T Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ll~ 256 (438)
T PRK10133 177 ILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLAR 256 (438)
T ss_pred HhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccchhhhHHHHHh
Confidence 4110 00 0 0000 0135777775433 333333333333334422111111 11223455678899
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHH-hhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Q 011925 249 KILYYQVALVYMLTRLVVNVSQAYLAFYV-INDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVL 326 (475)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~ 326 (475)
||.++...+..++..........|.+.|+ ++..|+++.+.+.......++.+++.++.+++ +|+++ |+.+..+..+
T Consensus 257 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~--~~~l~~~~~~ 334 (438)
T PRK10133 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP--HKVLAAYALI 334 (438)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHH
Confidence 99887766666666666666778889886 56679999888888788788888888887765 44444 4555565555
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 327 WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
..+......+.+ +.+ .+....+.|++.+..+|...+...+..+++ .| ...++..+ ..+|+++++.+.+.+.+
T Consensus 335 ~~~~~~~~~~~~--~~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~--~as~l~~~-~~~g~~~~~~i~G~l~~ 406 (438)
T PRK10133 335 AMALCLISAFAG--GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIVM-TIIGGGIVTPVMGFVSD 406 (438)
T ss_pred HHHHHHHHHHcC--ChH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-hc--cchhHHhH-HhccchHHHHHHHHHHH
Confidence 544444333333 222 244567889999999999988887776654 45 45555543 44678888888887753
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-23 Score=204.39 Aligned_cols=330 Identities=11% Similarity=0.027 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccC
Q 011925 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (475)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~ 117 (475)
+...+..+.+|.+.++.|+|+.++|++.+++.+...+.+++.|+++||+||||. +..+.+..++....... .
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~i~~~~~~~-------~ 76 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV-ILGGTLVFALAAVACAL-------A 76 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH-HHHHHHHHHHHHHHHHH-------H
Confidence 344566688899998889999999999999999999999999999999999886 45555555555443321 1
Q ss_pred CccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 011925 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (475)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (475)
.+.+...+.. .+.+++.+...++..+++.+..+ +++|++..++.+....+|..+++.+++.+..
T Consensus 77 --~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--------- 140 (377)
T PRK11102 77 --QTIDQLIYMR----FLHGLAAAAASVVINALMRDMFP-KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV--------- 140 (377)
T ss_pred --ccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1122222222 26777788888888889999876 7889999999988888888888777766543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCC-C-cchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHH
Q 011925 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-N-SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
..+|++.+++.+.+.++..++..+..||+++++++++ + ++..+++++.+|||+++...+...+..........+.|.
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (377)
T PRK11102 141 -WFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPF 219 (377)
T ss_pred -HcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 3589999888777776665555555666433221111 1 123345677888998776666655555556666677788
Q ss_pred HHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc--CCchHHHHHHHHHHH
Q 011925 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL--PMNMSAFMYVLAIFV 352 (475)
Q Consensus 276 y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ 352 (475)
+..+..|.++.+.+.+.....++.+++.++.+++ +|.++ |+.+..+.....+..+..... ...+.+...+...+.
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGA--LNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAF 297 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888888888888877777777777777776664 44433 555555555433322222211 112333333333344
Q ss_pred HHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHH-HHHHHHH
Q 011925 353 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDK-MSCGIAV 397 (475)
Q Consensus 353 g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-ig~~ig~ 397 (475)
+.+.+...+.......+..| +.+| ...++.+.... +|+.+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~g~~~g~ 340 (377)
T PRK11102 298 VGCVSMISSNAMAVILDEFP-HMAG--TASSLAGTLRFGIGAIVGA 340 (377)
T ss_pred HHHHHHhhHHHHHHHhcccc-ccch--HHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444 5666 56666555433 3333333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=213.40 Aligned_cols=336 Identities=17% Similarity=0.203 Sum_probs=231.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHH-HHHhcC
Q 011925 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-FSSVFG 109 (475)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~-~~~~~~ 109 (475)
+.+...+......+.+|.++.+. |.|+.++|++.+++.+...+.+|+.|+++||+||||. +..+.+..+++ ....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~- 81 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV-LIIGLLLFALGSLLLAF- 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-EeehhhhhhhHHHHhhh-
Confidence 34556667777777888555554 9999999999999999999999999999999999995 56666666666 33222
Q ss_pred CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
. .+.+ .....+ .+.+++.+...+...+++.+..+ ++||++..+.......+|.++++.+++.+.
T Consensus 82 -------~--~~~~-~~~~~~---~l~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-- 145 (352)
T PF07690_consen 82 -------A--SNFW-LLLIAR---FLLGIGSGFFSPASNALIADWFP-PEERGRAFGILSAGFSLGSILGPLLGGFLI-- 145 (352)
T ss_dssp -------H--CCHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHCCC-TCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred -------h--hhHH-HHhhhc---cccccccccccccccccccccch-hhhhhhccccccchhhhhhhcccchhhhhh--
Confidence 0 1222 222222 26788888888889999999987 589999999999999999888877766553
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-CCCcc---hH----HHHHHHHhchhHHHHHHHHHH
Q 011925 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSH---AR----ISWAYWFKKILYYQVALVYML 261 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~---~~----~~~~~l~~~~~~~~~~~~~~~ 261 (475)
...+||+.+++.+++.++..++.....+|+++++++ +++++ .+ +.++.++++|.++......++
T Consensus 146 --------~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
T PF07690_consen 146 --------SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFL 217 (352)
T ss_dssp --------CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHH
T ss_pred --------hccccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhH
Confidence 245899999988888777766533334333222111 11111 11 225677788876644444555
Q ss_pred HHHHHHhhhHHHHHHHhhhcccc-cchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-
Q 011925 262 TRLVVNVSQAYLAFYVINDLRMG-QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP- 338 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~- 338 (475)
..........+.|.|+.+..|.+ ..+.+.......+..+++.++.+++ +|+++ |+...+......+....+.+..
T Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 295 (352)
T PF07690_consen 218 FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGR--RRRLLIAILLLILGALGLLLLPF 295 (352)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566678899999988888988 5666666666666677777776654 33333 3333344433333333333332
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHH
Q 011925 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV 397 (475)
Q Consensus 339 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~ 397 (475)
.++....+...++.|++.+...+....+..+..|++++| ...|+.+....+|..+||
T Consensus 296 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 296 SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRG--TAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHCC
Confidence 224455556777889999998999999999999999999 999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-24 Score=208.70 Aligned_cols=343 Identities=11% Similarity=0.033 Sum_probs=218.9
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~ 105 (475)
.+.+.++.+..........+.+|.+.+|.|.|..+.|++.++..+...+.+|+.|+++||+||||.+ ..+....+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~ 83 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL-LFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH-HHHHHHHHHHHH
Confidence 3455566666777777788888998888899999999999999999999999999999999998874 455555555544
Q ss_pred HhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHH
Q 011925 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (475)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (475)
+... . .+.+...+ .+ .+.+++.+...+...+.+.+..+ +++|++..+....+..+|..+++.++..
T Consensus 84 l~~~-------~--~~~~~l~~-~r---~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 84 MFTL-------S--SSYLMLAI-GR---LVSGFPHGAFFGVGAIVLSKIIK-PGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHH-------h--CcHHHHHH-HH---HHHHhhhHHHHHHHHHHHHHhCC-hHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 3321 1 12233222 22 26677766665555666777765 6778888888877777777776666554
Q ss_pred HHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHH
Q 011925 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLV 265 (475)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 265 (475)
+. ...+||+.+.+.+++.++..+..++..||++++ ++.+.++.+ +.+|+++.+.......+....
T Consensus 150 l~----------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 214 (382)
T PRK10091 150 LS----------QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE----AKGGLREQF-HFLRSPAPWLIFAATMFGNAG 214 (382)
T ss_pred Hh----------hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc----cccCHHHHH-HHhcChHHHHHHHHHHHHHHH
Confidence 43 235899999988777666655555556664321 111223333 456777666655444444444
Q ss_pred HHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 011925 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAF 344 (475)
Q Consensus 266 ~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (475)
......|.+.|+.+..|.++.+.+.+.....++.+++.++.+++ +|+++ |+....+..+..++.+...... ++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~--~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 291 (382)
T PRK10091 215 VFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSP--LRIAAVTDFIIVLALLMLFFFG-GMKTA 291 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCc--hhHHHHHHHHHHHHHHHHHHHH-hhHHH
Confidence 44556677888887788888878877777777888888887664 33333 5556666666555544433322 23333
Q ss_pred HHHHHHHHHHHHHHHHHh-HhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 345 MYVLAIFVGIANALMMVT-GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 345 ~~~~~~l~g~g~~~~~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
..+...+.+++.....+. .....+...++|..| .. ..+...++|.++|+.+.+.+.+
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~g~~~Gp~~~G~l~~ 349 (382)
T PRK10091 292 SLIFAFICCAGLFALSAPLQILLLQNAKGGELLG--AA--GGQIAFNLGSAIGAYCGGMMLT 349 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHH--HH--HHHHHHHHHHHHHHHHhHHHHH
Confidence 344444555555433332 222333334445555 32 2245667888888888877654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=210.93 Aligned_cols=351 Identities=12% Similarity=0.027 Sum_probs=214.1
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
+++..+...++.+...+........+|.+.++.|+|+.+.+++.+++.+...+.+|+.|+++||+|||+.+ ..+.+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l-~~~~~~~~ 94 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLM-MWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH-HHHHHHHH
Confidence 34444555556555566666665555665566699999999999999999999999999999999998874 44555555
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
++...... . .+.+. +...+ .+.+++.+.......+++.|..+ +++|+++.++...+..+|.++++.
T Consensus 95 ~~~~~~~~-------~--~~~~~-l~~~r---~l~G~g~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lg~~~~~~ 160 (426)
T PRK12307 95 VGTGLSGL-------A--SGVIM-LTLSR---FIVGMGMAGEYACASTYAVESWP-KHLKSKASAFLVSGFGIGNIIAAY 160 (426)
T ss_pred HHHHHHHH-------H--hHHHH-HHHHH---HHHHHHHhhHHHHHHHHHHHhCC-HhHhhHhhhHHHHHHhHHHHHHHH
Confidence 55433221 1 12222 22223 26777777777777888888876 788999999988888888887766
Q ss_pred HHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc----cCC--Cc----chHHHHHHHHhchh
Q 011925 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LRG--NS----HARISWAYWFKKIL 251 (475)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~----~~~--~~----~~~~~~~~l~~~~~ 251 (475)
+.+.+. ...+||+.+++.....++. +......||+++.++ .++ ++ .....+++++|+|.
T Consensus 161 l~~~l~----------~~~~w~~~f~i~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (426)
T PRK12307 161 FMPSFA----------EAYGWRAAFFVGLLPVLLV-IYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQ 229 (426)
T ss_pred HHHHHc----------ccCCHHHHHHHHHHHHHHH-HHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhch
Confidence 554443 2358999987754333322 222222344321100 000 00 01235678888887
Q ss_pred HHHHHHHHHH---HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHH
Q 011925 252 YYQVALVYML---TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 327 (475)
Q Consensus 252 ~~~~~~~~~~---~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~ 327 (475)
++........ ..........++|.|+++. |.++.+.+.......++.+++.++.+++ +|+++ |+....+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~--~~~~~~~~~~~ 306 (426)
T PRK12307 230 FPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGL--KKTFSIGLLMS 306 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence 6644332222 2222334567889998764 8877766666666667777787776664 34433 55556665555
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHH--HHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 328 VFCGAGILILPMNMSAFMYVLAIFVGIAN--ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~--~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
.+........+.++... +...+.+++. ....+.......+..|++++| ...|+.....++++.+++.+.+.+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 307 FLFIFPLFRIPQDNYLL--LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG--LGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHHHHHHHHHccccHHH--HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh--hhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 44433333333222222 1222333221 112233334556778888888 77888778888888888888877753
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-23 Score=203.33 Aligned_cols=346 Identities=12% Similarity=0.034 Sum_probs=208.2
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
.+....+-++.+...+...+..++++.|+++. |+|++++|++.+...+...+.+++.|.++||+||||.+++.+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGV 93 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 33445566668888888888889999998876 99999999999888887777777777779999999986655555443
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccch--hhHhhHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR--VVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R--~~~~~~~~~~~~~g~~~~ 179 (475)
+...+.. . ..+.+...+..+ +.+...+...+...++..+..+ +++| +..+++.+.+..+|.+++
T Consensus 94 ~~~~~~~-------~--~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~g 159 (393)
T PRK15011 94 LACTLFA-------W--NRNYFVLLFVGV----FLSSFGSTANPQMFALAREHAD-KTGREAVMFSSFLRAQVSLAWVIG 159 (393)
T ss_pred HHHHHHH-------H--hhHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHHHHh
Confidence 4332211 1 112222112222 2333333444445566666543 3333 344577777788888888
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhch-hHHHHHHH
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI-LYYQVALV 258 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 258 (475)
+.+++.+.. ..+||..+++.++..++..++.+...||.++++++++ .+ .+. ..+++ ..+.....
T Consensus 160 ~~i~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~~~ 224 (393)
T PRK15011 160 PPLAYALAM----------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT-GT-LEA---PRRNRRDTLLLFVI 224 (393)
T ss_pred hHHHHHHHH----------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc-cc-ccc---cccccccHHHHHHH
Confidence 777766643 4589999988877777666666666676432211111 11 111 12232 22333333
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 011925 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~ 337 (475)
.............+.|.|+++..|+++.+.+.+.....+..+++.++.+++ +|+++ |+.+..+.....+.......
T Consensus 225 ~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~--~~~~~~~~~~~~~~~~~~~~- 301 (393)
T PRK15011 225 CTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGK--RFLMRVAAVAGVCFYAGMLM- 301 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHH-
Confidence 333334445566789999988889888777766555445556666666654 44444 45555554444333332222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 338 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 338 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
. ++.+..++...+.+++.+...+......++..|+ ++| ...++++...++|..+++.+.+.+.
T Consensus 302 ~-~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g--~~~~~~~~~~~lg~~~g~~l~G~i~ 364 (393)
T PRK15011 302 A-HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAG--SATTLYTNTSRVGWIIAGSLAGIVA 364 (393)
T ss_pred H-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Ccc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2444444455555666665555444555555554 466 7788877778888888888877664
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=206.87 Aligned_cols=339 Identities=8% Similarity=-0.015 Sum_probs=212.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCC
Q 011925 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (475)
Q Consensus 31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~ 110 (475)
++.+............+|.+.++.|+|..+.|++.+...+...+.+++.|+++||+||||.+ ..+.+..+++..+...
T Consensus 14 ~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~-~~~~~~~~i~~~l~~~- 91 (394)
T PRK03699 14 LSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL-IFGFALMILAVAGLMF- 91 (394)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHH-
Confidence 34444455556666778888777799999999999999999999999999999999999974 4455555555433321
Q ss_pred ccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011925 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (475)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (475)
. .+.+...+... +.+++.+.......+++.+..+ +++|++..+..+....+|..+++.+.+.+..
T Consensus 92 ------~--~~~~~~~~~~~----l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-- 156 (394)
T PRK03699 92 ------S--HSLALFSIAMF----VLGVVSGITMSIGTFLITHVYE-GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA-- 156 (394)
T ss_pred ------c--chHHHHHHHHH----HHHHhhHhhccchhHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 1 12222222222 5666666665666777888775 5778888887777777777776666555432
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhh
Q 011925 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (475)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (475)
...+||+.+.+.+++.++..++.++. .||++++++ +++++ ..++ ..++.++...+..++........
T Consensus 157 -------~~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 224 (394)
T PRK03699 157 -------RSIEWYWVYACIGLVYVAIFILTLFSEFPALGKHAP-KADKP---VAKE-KWGIGVLFLAIAALLYILAQLTF 224 (394)
T ss_pred -------ccccHHHHHHHHHHHHHHHHHHHHhcCCccccccCc-cccCc---cccc-cCChHHHHHHHHHHHHHHHHHHH
Confidence 23589999988777665554443321 122111111 11111 1111 12455555555555655666778
Q ss_pred hHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 011925 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVL 348 (475)
Q Consensus 270 ~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (475)
..|.|.|+++..|+++.+.+.+.....++..++.++.+++ +|+.+ |+.+.....+..+....+... ++.+...+.
T Consensus 225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~--~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~ 300 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDL--QRILTVLAGLALVLMYLFVNT--DDPSHLLYA 300 (394)
T ss_pred HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHHHHHHHc--CCchHHHHH
Confidence 8999999998889988877777676677778888877765 33333 455544444444433333232 233344455
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 349 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 349 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
.++.|++.+..++.......+..+++ ++ ...+.......+|..+++.+.+.+.+
T Consensus 301 ~~~~G~~~~~~~~~~~~~~~~~~~~~-~~--~~~g~~~~~~~~g~~i~p~~~G~l~~ 354 (394)
T PRK03699 301 ILGLGFFSSAIYTTIITLGSQQTKVA-SP--KLVNFILTCGTIGTMLTFVVTSPIVA 354 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CH--HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 66777777777666665555544433 34 44566666778888888888877754
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-23 Score=209.95 Aligned_cols=361 Identities=13% Similarity=0.038 Sum_probs=251.1
Q ss_pred CCCccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHH
Q 011925 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (475)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~ 99 (475)
+++.+..-.+-++++.+++...+...-++.+.++..-|+..+|++.....+...+..|+.|.++||+.|||..+..-.+.
T Consensus 6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~ 85 (524)
T PF05977_consen 6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLR 85 (524)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 34444455566777778888888877888888888789999999999999999999999999999999999855444333
Q ss_pred HHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHH
Q 011925 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
..+...+.+. ......+.+. ++.+. ++.+.+.+..++..+++++++.+ +++..++++..+...++..+++
T Consensus 86 ~~~~~~L~~l-----~~~~~~~~~~-Ll~~~---fl~g~~~a~~~PA~~A~ip~lV~-~~~L~~A~al~s~~~niar~iG 155 (524)
T PF05977_consen 86 ALVALLLAVL-----AFFGLLSPWL-LLILT---FLLGIGSAFFNPAWQAIIPELVP-KEDLPAANALNSISFNIARIIG 155 (524)
T ss_pred HHHHHHHHHH-----HHhCcCCHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHHHHHhcc
Confidence 3222222220 0111122222 22222 26788888889999999999997 6778889999999999999999
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--cCCCcchHHHHHHHHhchhHHHHHH
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG--LRGNSHARISWAYWFKKILYYQVAL 257 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 257 (475)
+.+++.++..+ |-.+.|.+.++..++.........+++++++. ++-..+.++.++.+.++|.......
T Consensus 156 PalgG~Lva~~----------G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~ 225 (524)
T PF05977_consen 156 PALGGILVAFF----------GAAAAFLINALSFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLL 225 (524)
T ss_pred chHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHH
Confidence 99999888643 44455555444333222222222222111111 1112345667777777887665555
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 011925 258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~ 337 (475)
..++..+........+|.+..+.+|.++...|++....++|+++++++.+++++..++ ++.+..+.+..+++.+.+.+.
T Consensus 226 ~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~-~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 226 RSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSS-RRLVLLASLLFALALLLLALS 304 (524)
T ss_pred HHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc-chhhHHHHHHHHHHHHHHhcc
Confidence 4445555555566778999999999998888988888899999999887665332221 456666666666665555443
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 338 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 338 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
.+.+...+..++.|++............+..+|++.+| ..++++.+....+.++|..+.|.+..
T Consensus 305 --~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~G--Rv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 305 --PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRG--RVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677788899999888888888899999999999 88899888888888888888877753
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-23 Score=203.83 Aligned_cols=336 Identities=9% Similarity=-0.028 Sum_probs=214.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHH-HHHHHHhcCCc
Q 011925 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV-AVSFSSVFGGC 111 (475)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~-~~~~~~~~~~~ 111 (475)
.++.....++..+++|.|++|.|.|+.++|++.+++.+...+.+|++|+++||+|||+.......+.. ........
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--- 89 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF--- 89 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH---
Confidence 44455667888899999999999999999999999999999999999999999999532211111111 11111111
Q ss_pred cCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011925 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (475)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (475)
. ..+.+. ....+ .+.+.+.+...+...++..+. +++|++..+.......+|..+++.+++.+.+
T Consensus 90 -----~-~~~~~~-l~i~~---~l~g~~~~~~~~~~~a~~~~~---~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~--- 153 (382)
T PRK11128 90 -----G-AHSFWL-LFVAI---GLFNLFFSPLVPLTDALANTW---QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS--- 153 (382)
T ss_pred -----h-cccHHH-HHHHH---HHHHHHHcccccHHHHHHHHH---HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---
Confidence 0 112222 22222 245555555555555666654 3457777777777778888888888777753
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-CCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhh
Q 011925 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ 270 (475)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 270 (475)
..+||..+++.++..++..+. .+..||+++++++ +++++..+++++++|||+++...+..++.........
T Consensus 154 -------~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~ 225 (382)
T PRK11128 154 -------WFGEQAILWILTAGVASMLLG-QLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYY 225 (382)
T ss_pred -------HcChhHHHHHHHHHHHHHHHH-HHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHH
Confidence 358998887766544433333 2334443221111 1111224567899999998887776776666677778
Q ss_pred HHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 011925 271 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVL 348 (475)
Q Consensus 271 ~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (475)
.+.|.|..+ .|.++.+.+.+.....++.++..++.++ +.||+ |+.+..+.....++...+... ++.+.+++.
T Consensus 226 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~---l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~ 299 (382)
T PRK11128 226 GFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNR---LFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVI 299 (382)
T ss_pred HHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHH
Confidence 888999865 6888777776655555555555555444 44544 556666766666665444432 466666777
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHH-HHHHHHHHHHHHHHHHhc
Q 011925 349 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS-FLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 349 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~ig~~ig~~l~~~~~ 404 (475)
.++.|++.+...+....+..+. ++++.| ...+..+ +...+|.++|+.+.+.+.
T Consensus 300 ~~l~g~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 300 QILHCGTFTVCHLAAMRYIAAR-PGSEVI--RLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999988877777776655 344446 5666665 444566677777776665
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=205.49 Aligned_cols=351 Identities=12% Similarity=0.081 Sum_probs=210.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHh
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~ 107 (475)
+....+.....+....+++|.|++|. |.|+.++|++.++..+...+.+|++|+++||+||||+++...... ++.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~-~~~~~~~ 85 (396)
T TIGR00882 7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGL-LVLFAPF 85 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHHH
Confidence 33344555666778888999999986 999999999999999999999999999999999999865433322 2221111
Q ss_pred cCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 011925 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (475)
Q Consensus 108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (475)
+. .. ....... .......+.....+++.+.......++..+.. +++++..+.......+|..+++.+++.+.
T Consensus 86 ~~--~~--~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 86 FI--YV--FGPLLQS-NILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS---RNSNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HH--HH--hhhHHHH-HHHHHHHHHHHHHHHHhccchhhHHHHHHHhh---hhcccccchhhhhcccHHHHHHHHHhhhh
Confidence 10 00 0000000 00011111112345555554444455554432 22333445555566677777776665442
Q ss_pred HhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc------CCCcchHHHHHHHHhchhHHHHHHHHHH
Q 011925 188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYYQVALVYML 261 (475)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 261 (475)
..+|+..|++.+++.++..++.+...+|++++++. +++++..++.++++|||+++...+..++
T Consensus 158 -----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 226 (396)
T TIGR00882 158 -----------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVG 226 (396)
T ss_pred -----------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence 24788888887777766655554444443221110 1112224567889999998766655555
Q ss_pred HHHHHHhhhHHHHHHHhhhc---ccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 011925 262 TRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~ 337 (475)
..........+++.|..+.. +.+....+.......+...++.+..+++ +|.++ |+.+.++..+.++........
T Consensus 227 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~--~~~l~~~~~l~~l~~~~~~~~ 304 (396)
T TIGR00882 227 VACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGA--KNALLIAGTIMSVRIIGSSFA 304 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhc
Confidence 55455555566777776654 3333344544444445555555555543 33333 566667766666655443332
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH-HHHHHHHHHHHHHHHHHHhcc
Q 011925 338 PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 338 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~ig~~ig~~l~~~~~~ 405 (475)
++.+.+++...+.|++..........+.++..++|.++ +..+. .++..++|+.+++.+.+.+.+
T Consensus 305 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--t~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 305 --TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSA--TIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEE--EeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35565566677888888777777777777777888877 55554 567888898888887777653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=210.22 Aligned_cols=335 Identities=11% Similarity=0.011 Sum_probs=203.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhh
Q 011925 47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126 (475)
Q Consensus 47 l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 126 (475)
..++++|.|+|+.+.|++.+++.+...+..++.|+++||+||||.+ ..+.+..+++...... .| ......+..
T Consensus 49 ~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~-~~~~~~~~~~~~~~~~--~~----~~~~~~~~l 121 (438)
T TIGR00712 49 AMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL-PAGLILSAAVMLLMGF--VP----WATSSIAIM 121 (438)
T ss_pred hhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh-HHHHHHHHHHHHHHhc--cc----cccchHHHH
Confidence 3445666799999999999999999999999999999999999874 4455555555443321 11 001111111
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHH
Q 011925 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA 206 (475)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (475)
...+ .+.+++.+....+....+.+..+ +++|+++.++.+.+..+|..+++.+...... ...+||..+
T Consensus 122 ~~~~---~l~g~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~---------~~~~w~~~f 188 (438)
T TIGR00712 122 FVLL---FLNGWFQGMGWPPCGRTMVHWWS-QSERGTIVSIWNCAHNIGGGIPPLLVLLGMA---------WFNDWHAAL 188 (438)
T ss_pred HHHH---HHHHHHhhcchHHHHHHHHHhcC-cccchhHHHHHHHHHHhHhHHHHHHHHHHHH---------HhhhhHHHH
Confidence 2222 24566666666666777788775 7889999999888888887776655443322 235899999
Q ss_pred HHHHHHHHHHHHHHhhccccccccc---c-c--C--------C--C--cchHHH-HHHHHhchhHHHHHHHHHHHHHHHH
Q 011925 207 YSSIFIGCCFVGIFLSRTEEPRLKM---G-L--R--------G--N--SHARIS-WAYWFKKILYYQVALVYMLTRLVVN 267 (475)
Q Consensus 207 ~~~~~~~~i~~~~~~~~~~e~~~~~---~-~--~--------~--~--~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (475)
++.+++.++..++.++..||+++.+ + + + + + .+.++. .+.++||+.++...+..++.....+
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (438)
T TIGR00712 189 YFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRY 268 (438)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence 8887777666555555555543210 0 0 0 0 0 011111 1346788888877766666666667
Q ss_pred hhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHH---HHHHHHHhhcCCchHH
Q 011925 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW---VFCGAGILILPMNMSA 343 (475)
Q Consensus 268 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~---~~~~~~~~~~~~~~~~ 343 (475)
....|+|.|+++..|.++.+.++......++.+++.++.+++ +|.+++ |+.. .+.... .++...+...+..+.+
T Consensus 269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (438)
T TIGR00712 269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG-NRGA-TGVFFMTLVTIAVIVYWMNPAGNPL 346 (438)
T ss_pred HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cccH-HHHHHHHHHHHHHHHHHhcCCCchH
Confidence 788899999998888888777777777777788888887765 444332 2222 222111 1221222222222333
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHH-HHHHHHHHHhcc
Q 011925 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC-GIAVYVLQSYQS 405 (475)
Q Consensus 344 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~-~ig~~l~~~~~~ 405 (475)
......+..|++.............+..|++.+| ...|+.+...++++ .+++.+.+.+.+
T Consensus 347 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~gg~~~gp~l~G~l~~ 407 (438)
T TIGR00712 347 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVGYTVD 407 (438)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhcChhhee--eehhhhchHHHhhhhhhcchhHHHHHH
Confidence 3223333344332211122223445667778888 77888877777764 567777776654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-24 Score=207.72 Aligned_cols=342 Identities=13% Similarity=0.055 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCcc
Q 011925 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~ 116 (475)
..........+|.+.++.|.|..+.|++.++..+...+.+++.|+++||+||||.+ ..+.++..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~------- 79 (379)
T TIGR00881 8 YLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL-PIGLILCAIVNLFFGF------- 79 (379)
T ss_pred HHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh-HHHHHHHHHHHHHHHH-------
Confidence 34445555566766666699999999999999999999999999999999999874 4555555555443321
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH-HHHHHHHhhccCCc
Q 011925 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA-IAFIVFSVSTAKTH 195 (475)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~ 195 (475)
. .+.+...+ .+ .+.+++.+...+...+++.+..+ +++|++..++...+..+|..+++. +...+.
T Consensus 80 ~--~~~~~~~~-~~---~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------- 144 (379)
T TIGR00881 80 S--TSLWVMAA-LW---ALNGIFQGMGWPPCGRTVTKWFS-RSERGTWVSFWNCSHNVGGGLLPPLVLFGIA-------- 144 (379)
T ss_pred h--hhHHHHHH-HH---HHHHhhccccCCchHHHHHHhcC-HhhheeeEeehhccchhHHHHHHHHHHHHHH--------
Confidence 1 12222222 22 25677777777778888899886 678999999988888888888773 333332
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-----c---CC-----------CcchHHHHHHHHhchhHHHHH
Q 011925 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----L---RG-----------NSHARISWAYWFKKILYYQVA 256 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~-----~---~~-----------~~~~~~~~~~l~~~~~~~~~~ 256 (475)
...+||+.+++.+.+.++..++.+...+|+++.++ + ++ +.+.+...++++|+|.++...
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (379)
T TIGR00881 145 --ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYIS 222 (379)
T ss_pred --hcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHH
Confidence 23578988887776666655555555554322100 0 00 011223456778899888777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHH-HHHHHHHHHHHHH
Q 011925 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYS-AGGVLWVFCGAGI 334 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~-~~~~~~~~~~~~~ 334 (475)
+..++..........+.|.|+.+..|.++.+.+.......++.+++.++.+++ +|..+|.|.... ........+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 302 (379)
T TIGR00881 223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY 302 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 77777777777888999999998889988777777777777788888887765 333332122221 2222222222222
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 335 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
...+..+.+......++.|+......+....+..+..|++++| ...|+.+...++|..+++.+.+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 303 WLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAG--TAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred hcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhH--HHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 2222223333344445555544444444455667778888889 88999999999999999888777654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-23 Score=203.70 Aligned_cols=340 Identities=12% Similarity=0.055 Sum_probs=214.2
Q ss_pred cceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHH
Q 011925 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (475)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~ 103 (475)
+..+....+.+...+..+..++++|.+.+|.|.|..++|++.+.+.+...+.+|+.|+++||+||||.++ .+.+..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~-~~~~~~~~~ 84 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYY-LASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3355666778888888899999999999999999999999999999999999999999999999999854 455555555
Q ss_pred HHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHH
Q 011925 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (475)
Q Consensus 104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (475)
..... .. .+.+.. ...+ .+.+++.+...+...+...+..+ +++|++..+....+..+|..+++.+.
T Consensus 85 ~~~~~-------~~--~~~~~l-~~~~---~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 85 CAGLG-------LM--VGFWSW-LAWR---FVAGIGCAMIWVVVESALMCSGT-SRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHH-------Hh--ccHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322 11 122222 2222 26777777776666666666665 67899999998888888888877776
Q ss_pred HHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHH
Q 011925 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTR 263 (475)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 263 (475)
..+..... ....|+...... ....+.+...+|++. + ++ ..++.++.+|||.++......+...
T Consensus 151 ~~l~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (381)
T PRK03633 151 SKVSTELM------SVLPWVTGLVLA-----AILPLLFTRILNQQA--E-NH---DSTSIWPMLKLRQARLGVNGCIISG 213 (381)
T ss_pred hccccccc------chHHHHHHHHHH-----HHHHHHHhcccCCCC--C-CC---CCCCHHHHHHhcchHHHHHHHHHHH
Confidence 65543210 123444322211 111111112222111 1 11 1123456788888775544334444
Q ss_pred HHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchH
Q 011925 264 LVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMS 342 (475)
Q Consensus 264 ~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (475)
........++|.|.++ .|.++.+.+.......++.+++.+..+++ +|+++ |+.+..+.....++..... + ..
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~--~~~l~~~~~~~~~~~~~~~--~--~~ 286 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGR--LLVLRVQVFVVILGSIAML--S--QA 286 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCc--HHHHHHHHHHHHHHHHHHh--h--hH
Confidence 4455566788999876 48877766666566666777777766554 33333 5555566555555443322 2 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 343 AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 343 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
.......+.|++.....|.......+..++++.+ ...+..++...+|..+|+.+.+.+.+
T Consensus 287 -~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~igp~~~G~l~~ 346 (381)
T PRK03633 287 -AMAPALFILGAAGFTLYPVAMAWACEKVEHHELV--AMNQALLLSYTVGSLLGPSFTAMLMQ 346 (381)
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223445566666666677777666666666656 56667677788888888888877653
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=208.75 Aligned_cols=363 Identities=8% Similarity=-0.033 Sum_probs=226.2
Q ss_pred CCCccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHH
Q 011925 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (475)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~ 99 (475)
|+.|+..+.-.++-+....+....+...|...+|.|+|..+.|++.+++.+..++.+++.|+++||+||||.+ ..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~-~~~~~~ 82 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI-AGIMVL 82 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH-HHHHHH
Confidence 3444544445555444455555565566654455699999999999999999999999999999999999974 555555
Q ss_pred HHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHH
Q 011925 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
..+...+.. .. .+.... ...+ .+.+++.+...+...+++.+..+ +++|++..++.+.+..+|.+++
T Consensus 83 ~~~~~~~~~-------~~--~~~~~l-~~~r---~l~G~~~~~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~ 148 (412)
T TIGR02332 83 WGIASTATM-------FA--TGPESL-YLLR---ILVGIAEAGFLPGILLYLTFWFP-AYFRARANALFMIAMPVTMALG 148 (412)
T ss_pred HHHHHHHHH-------Hh--cCHHHH-HHHH---HHHHHHHhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 555543322 11 122222 2233 26777777766666677888876 7889999999999888998888
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-----cC----------------CC--
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----LR----------------GN-- 236 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~-----~~----------------~~-- 236 (475)
+.+++.+..... . ....+||+.+++.++.+++..++.++..||+++..+ ++ ++
T Consensus 149 ~~~~~~l~~~~~-~---~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (412)
T TIGR02332 149 LILSGYILALDG-L---MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGA 224 (412)
T ss_pred HHHHHHHHhCCC-C---CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccc
Confidence 887776653100 0 013589999999877777666666666676542110 00 00
Q ss_pred --c---chHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cccccchhhhHhHHHHHHHHHHHHHHHHH-
Q 011925 237 --S---HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND-LRMGQSAKALVPAIIYICSFIVSILLQEM- 309 (475)
Q Consensus 237 --~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 309 (475)
+ +.+..+++++ ++.++...+.+++.....+...+|+|.|+++. .+.+..+.+.+.....++.+++.++.+++
T Consensus 225 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~ 303 (412)
T TIGR02332 225 FAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHS 303 (412)
T ss_pred cccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHh
Confidence 0 0012234433 56677777777777777888899999999873 45666666666677777788888877665
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHH
Q 011925 310 AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLD 389 (475)
Q Consensus 310 ~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 389 (475)
+|+.+| |+..........++..+... . ++....+....+.++|.....+.......+..|++++| ..+|+.+...
T Consensus 304 dr~~~r-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~a~g~~~~~~ 378 (412)
T TIGR02332 304 DRLKER-KHHTALPYLFAAAGWLLASA-T-DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARA--IAIAVINATG 378 (412)
T ss_pred cccCcc-HHHHHHHHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHH--HHHHHHHHhh
Confidence 343332 22233333333333222222 2 12222222222333333222222233334456777888 8899999999
Q ss_pred HHHHHHHHHHHHHhcccC
Q 011925 390 KMSCGIAVYVLQSYQSMS 407 (475)
Q Consensus 390 ~ig~~ig~~l~~~~~~~~ 407 (475)
++|+.+++.+.+.+.+..
T Consensus 379 ~~g~~~~p~~~g~i~~~~ 396 (412)
T TIGR02332 379 NIGSALSPFLIGILKDAT 396 (412)
T ss_pred hhhhhhhhhhcccccccC
Confidence 999999999888776443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=210.39 Aligned_cols=334 Identities=11% Similarity=-0.038 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccch
Q 011925 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (475)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 122 (475)
...+++.+.++.|.|..+.+++.+...+...+..|+.|+++||+||||.+ +.+.+..+++.+... .. .+.
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l-~~~~~~~~~~~~~~~-------~~--~~~ 107 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV-IAGGLLASLGMILAS-------FS--SNV 107 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH-HhhHHHHHHHHHHHH-------Hh--hhH
Confidence 44567777777799999999999999999999999999999999999974 444444444443221 11 112
Q ss_pred hhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHH
Q 011925 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (475)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (475)
+......+ .+.+++.+...++..+++.+.. +++|+++.++.+.+..+|..+++.+.+.+.. ..+|
T Consensus 108 ~~l~~~~~---~l~G~~~~~~~~~~~~~~~~~~--~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~----------~~gw 172 (455)
T TIGR00892 108 IELYLTAG---FITGLGLAFNFQPSLTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLFE----------SFGW 172 (455)
T ss_pred HHHHHHHH---HHHHhcchhhhhHHHHHHHHHH--HhhHHHHHHHHHhcccHHHHHHHHHHHHHHH----------HhCh
Confidence 22212222 1456666655566666677765 4689999999998888888887766655542 4589
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc----ccc--c------CCCc----c---hHHHH--HHHHhchhHHHHHHHHHH
Q 011925 203 RWIAYSSIFIGCCFVGIFLSRTEEPRL----KMG--L------RGNS----H---ARISW--AYWFKKILYYQVALVYML 261 (475)
Q Consensus 203 ~~~~~~~~~~~~i~~~~~~~~~~e~~~----~~~--~------~~~~----~---~~~~~--~~l~~~~~~~~~~~~~~~ 261 (475)
|+.+++.+++.++..+..++..++++. +.+ + ..++ + ...+. .+++|+|+++...+..++
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVI 252 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHH
Confidence 999998877666554443333322110 000 0 0000 0 00111 246788888877776666
Q ss_pred HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHH--HHHHHHHHHHHHhhcC
Q 011925 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMA-WTGQRLKAYYSA--GGVLWVFCGAGILILP 338 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~k~~~~~--~~~~~~~~~~~~~~~~ 338 (475)
..........++|.|.++ .|++..+.+.+.....++.+++.++.+++. +...|.|+...+ +.....++.+....
T Consensus 253 ~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-- 329 (455)
T TIGR00892 253 MFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-- 329 (455)
T ss_pred HHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 666667777899999876 588888888777777777777777776653 211111222222 22222233222222
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 011925 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 406 (475)
Q Consensus 339 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~ 406 (475)
.++.+.+++..++.|++.+...+....+..+..++++.| ..+|+++....+|..+|+.+.+.+.+.
T Consensus 330 ~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~lg~~igp~i~G~l~~~ 395 (455)
T TIGR00892 330 AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFS--SAVGLVTIVECCAVLIGPPLAGRLVDA 395 (455)
T ss_pred hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHh--hHHhHHHHHHHHHHHccccceeeeehh
Confidence 235555566777889988888887777877778888888 889999999999999999888876543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-22 Score=197.81 Aligned_cols=333 Identities=11% Similarity=0.038 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccC
Q 011925 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (475)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~ 117 (475)
+...+..+.+|.+.++.|.|+.++|++.++..+...+..++.|+++||+||||.+ ..+.....++...... .
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~-------~ 91 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL-LAGLSLFALGSLGMLW-------V 91 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH-HHHHHHHHHHHHHHHH-------h
Confidence 3334444444555555699999999999999999999999999999999999874 4445445444433221 1
Q ss_pred CccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 011925 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (475)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (475)
.+.+...+... +.+++.+...+...++..+..+ +++|.+..+.......++..+++.+++.+.+
T Consensus 92 --~~~~~l~~~~~----l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--------- 155 (401)
T PRK11043 92 --ESAAQLLVLRF----VQAVGVCSAAVIWQALVIDRYP-AQKANRVFATIMPLVALSPALAPLLGAWLLN--------- 155 (401)
T ss_pred --cCHHHHHHHHH----HHHhhhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 12222222222 5666666666666778888775 5667777777666667777777776665542
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011925 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV 277 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 277 (475)
..+||+.+++.+.+.++..++.++..+|++ + +++++.++++++++|+|+++...+...+..........+.|.|.
T Consensus 156 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 230 (401)
T PRK11043 156 -HFGWQAIFATLFAITLLLILPTLRLKPSKK-A---RKQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL 230 (401)
T ss_pred -cCChHHHHHHHHHHHHHHHHHHHHcCCCCC-c---cccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 358999988877766666555444333322 1 11223355678889999877655555444445556667888887
Q ss_pred hhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHH---HHHhhcCCchHHHHHHHHHHHH
Q 011925 278 INDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG---AGILILPMNMSAFMYVLAIFVG 353 (475)
Q Consensus 278 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~g 353 (475)
++ .|.++.+.+.......++..++.+..+++ +|.++ |+..........++. ........++.+...+...+.+
T Consensus 231 ~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (401)
T PRK11043 231 EQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGG--EQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMA 307 (401)
T ss_pred HH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 65 68888777765555455666666665553 44444 333323322222221 1111222233444444556778
Q ss_pred HHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 354 IANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 354 ~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
++.+...+.......+..| +++| ...|+.+..+..++..++.+.+.+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 308 AANGAIYPIVVAQALRPFP-QATG--KAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHHHHHhhhCc-ccCh--HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888887776666554444 4567 88899888888888888888887764
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-22 Score=201.76 Aligned_cols=362 Identities=11% Similarity=0.069 Sum_probs=212.0
Q ss_pred ehccccchhHHHHHHHHHHHHHHHHHH-c--CCChhHHHHHH-----HHHHHHhhhhhhhhhhhhhccCCcchhHHHHHH
Q 011925 27 LYYGSGHMLNDITAACWFTYLLLFLTD-I--GLSPRGAAAVM-----LSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (475)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~-~--g~s~~~~g~i~-----~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~ 98 (475)
+.-.++.+....+........|.+..+ . +.++. .|++. ++..+...+++++.|+++||+||||.++ .+..
T Consensus 25 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~-~~~~ 102 (438)
T PRK09952 25 LGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM-LTVW 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH-HHHH
Confidence 334445555555566655555655543 3 67766 45543 3555667888999999999999999854 4555
Q ss_pred HHHHHHHHhcCCccCCccCCccc-hhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHH
Q 011925 99 LVAVSFSSVFGGCMPCRILSTST-LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (475)
Q Consensus 99 ~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (475)
.++++..+... .|. ... .++....+.+...+.|++.+...+...+++.|..| +++|++..+....+..+|.+
T Consensus 103 ~~~~~~~~~~~--~~~----~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~g~~~G~~ 175 (438)
T PRK09952 103 MMGIATALIGL--LPS----FSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP-KNKKAFYSSGVQVGYGVGLL 175 (438)
T ss_pred HHHHHHHHHhc--CCc----HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHH
Confidence 55555443331 221 000 01111112222347788888877777788889887 67899998888888888887
Q ss_pred HHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc--C-CCcc-hHHHHHHHHhchhHH
Q 011925 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--R-GNSH-ARISWAYWFKKILYY 253 (475)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~--~-~~~~-~~~~~~~l~~~~~~~ 253 (475)
++..+...+...++... ...++||+.|++.+++.++...+ ....||+++..++ + ++.+ .....+.++|+|+.+
T Consensus 176 l~~~~~~~l~~~~~~~~--~~~~gWr~~f~~~~~~~l~~~~l-~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (438)
T PRK09952 176 LSTGLVSLISMMTTDEQ--FLSWGWRIPFLFSIVLVLIALWV-RNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAF 252 (438)
T ss_pred HHHHHHHHHHHhCCHHH--hhccChHHHHHHHHHHHHHHHHH-HHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHH
Confidence 77666555543322100 02468999998877665544332 2345554321111 1 1111 111223466777665
Q ss_pred HHHH-HHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHH
Q 011925 254 QVAL-VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 331 (475)
Q Consensus 254 ~~~~-~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~ 331 (475)
.... ..++.....+....|.|.|.++..|.+............+..+++.++.+++ +|+++ |+.+..+.++.+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~gr--r~~~~~~~~~~~~~~ 330 (438)
T PRK09952 253 LKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGR--RRVYITGALIGTLSA 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHH
Confidence 5443 4445556667778899999988888876544333333444556666666654 44444 555555555444433
Q ss_pred HHHhh-c-CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH-HHHHHHHHHHHHHHHHHHhc
Q 011925 332 AGILI-L-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 332 ~~~~~-~-~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~ig~~ig~~l~~~~~ 404 (475)
..+.. . ..++.+..+...++.+++.+...+....+..+..|.+.++ ...++ +++...++++++|.+.+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~--tg~g~~~~~~~~lgg~~~p~i~g~l~ 404 (438)
T PRK09952 331 FPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRY--SGAGVGYQVASVVGGGFTPFIAAALV 404 (438)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 1 2223333334455667777777777777878888887776 44444 34556678888888887764
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=197.87 Aligned_cols=366 Identities=12% Similarity=0.083 Sum_probs=260.4
Q ss_pred ceehccccchhHHHHHHHHH-HHHHHHHHHc-CC---C----hhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHH
Q 011925 25 SVLYYGSGHMLNDITAACWF-TYLLLFLTDI-GL---S----PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA 95 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~-~~l~~~~~~~-g~---s----~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~ 95 (475)
...++.+=+.+++-...++. .++|.|+++. +. + .+..|...+++.+..++..|+.|.++|+.|+||+++-.
T Consensus 15 ~~~sWilyD~~~~p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~ 94 (438)
T COG2270 15 GIKSWILYDWGSSPFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGF 94 (438)
T ss_pred cceeEEEeeccCCceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHH
Confidence 34445555666655555544 4678888875 33 2 35789999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHH
Q 011925 96 GSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 175 (475)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g 175 (475)
...+..++..+++. .| +....+...+.+. +..++....++.|+++.++.++ +++-++.++..+....+|
T Consensus 95 f~~i~i~~~~~L~~--i~----~~s~~~~~l~~~i----l~~i~~~~s~Vfyds~L~~~~~-k~~~~riS~lg~~~gylg 163 (438)
T COG2270 95 FTAIGIISTFLLWF--IP----PGSYLLLLLLFLI----LASIGFEFSNVFYDSMLPRLTT-KDNMGRISGLGWALGYLG 163 (438)
T ss_pred HHHHHHHHHHHHHH--hC----CCchHHHHHHHHH----HHHHhcchhheehhhHhhhhcC-ccccCccccccccccccc
Confidence 77777676666662 33 1122333333333 6778888999999999999987 666677787777777788
Q ss_pred HHHHHHHHHHHHHhhccCC--------ccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC------CCcchHH
Q 011925 176 NLSLYAIAFIVFSVSTAKT--------HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR------GNSHARI 241 (475)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~------~~~~~~~ 241 (475)
+.+.-+.....+..-+..+ ..+....-|..+.+.++--++..+-.++.+|+.++...+. .-++.++
T Consensus 164 s~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~ 243 (438)
T COG2270 164 SVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKS 243 (438)
T ss_pred chHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHH
Confidence 7665444322221110000 0001234566666655555555555566677654321011 1123456
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHH
Q 011925 242 SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAY 319 (475)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~ 319 (475)
.+|++.++++...+++..++..-+.+.....-..|-..++|+++.+..++.....+.+++++++.+++ .+|+ |++
T Consensus 244 t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~L---d~rfg~k~v 320 (438)
T COG2270 244 TFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFL---DERFGSKPV 320 (438)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCcee
Confidence 77888889988888889998888888888989999998999999888877777778888888887765 3444 677
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHH
Q 011925 320 YSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (475)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l 399 (475)
+.++.++..+..+...+.. ....++++.++.|...|..++.+-++..+..|++++| .++|++++..+.++.+||.+
T Consensus 321 l~~~lvi~~~~~~~~~~~~--~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~--~fFglyaltgra~S~~gp~l 396 (438)
T COG2270 321 LMIGLVILSIAALYLIFLE--GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG--RFFGLYALTGRAASFLGPFL 396 (438)
T ss_pred ehHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc--ceeehhhhhhhHHHHHHHHH
Confidence 7777777666555444443 2344567778999999999999999999999999999 99999999999999999999
Q ss_pred HHHhcccCC
Q 011925 400 LQSYQSMSP 408 (475)
Q Consensus 400 ~~~~~~~~~ 408 (475)
++.+...++
T Consensus 397 v~v~t~iTg 405 (438)
T COG2270 397 VAVITQITG 405 (438)
T ss_pred HHHHHHHhc
Confidence 988765444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=205.33 Aligned_cols=344 Identities=10% Similarity=0.015 Sum_probs=207.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHh
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~ 107 (475)
..+..+..........+++|.++++. |+|+.+.|++.++..+...+.+|+.|+++||+||||.+ ..+.+...++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT-TLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHHH
Confidence 33444455666677778888756555 99999999999999999999999999999999999974 45555555554433
Q ss_pred cCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 011925 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (475)
Q Consensus 108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (475)
.. ... +.+. +...++ +.+++.+. ..+..+++.+..+ +++|++..++......+|..+++.+.+++.
T Consensus 85 ~~-------~~~-~~~~-~~~~~~---~~g~~~~~-~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 85 GL-------AVQ-SYSV-LLLLRL---FIGIAGGS-FASCMPWISFFFP-KKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HH-------Hhh-hHHH-HHHHHH---HHHHhchh-hHhHHHHHHHhcC-HhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 21 110 2222 222232 45555443 3456777888876 788999999988888888888887777766
Q ss_pred HhhccCCccchHHHHHHHH-HHHHHHHHHHHHHHhhcccccccccccCCCc-----------chHHHHHHHHhchhHHHH
Q 011925 188 SVSTAKTHADLENQYRWIA-YSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS-----------HARISWAYWFKKILYYQV 255 (475)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~ 255 (475)
..+......+...+||+.+ ...+++..+..++.+...+|++++++++++. +..+..++.+|+|+++..
T Consensus 151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T TIGR00886 151 GSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWIL 230 (366)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhH
Confidence 5321100001134799888 3334444333333333344422211111100 011155678888888877
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH
Q 011925 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~ 334 (475)
.+..++..........+.|.|+++..|.++.+.+.+.....+..+++.++.+++ +|+++ |+....+......+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~--~~~~~~~~~~~~~~~~~~ 308 (366)
T TIGR00886 231 ALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG--ARKLLMSFLGVAMGAFLV 308 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc--chhHHHHHHHHHHHHHHH
Confidence 766666666666778899999998889888777766666666677777776664 44444 344444444444443333
Q ss_pred hhcCCc--hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHH
Q 011925 335 LILPMN--MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS 392 (475)
Q Consensus 335 ~~~~~~--~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig 392 (475)
.+.... +.+.......+.+++.+...+.......+..+ +++| ..+|+.+...++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~~g 365 (366)
T TIGR00886 309 VLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATG--AVSGLVGAIGNLG 365 (366)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcc--cHHHHHHHhccCC
Confidence 332221 33333333334444444433334444444444 5777 7888777766654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-22 Score=200.69 Aligned_cols=364 Identities=12% Similarity=0.034 Sum_probs=212.1
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHH-HHH-----HHHhhhhhhhhhhhhhccCCcchhHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM-LSG-----QIADGFATIFIGELIDRFGHFKIWHGAG 96 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~-~i~-----~l~~~i~~p~~G~l~Dr~Grr~~~l~~~ 96 (475)
++-.....++.+....+...++...|...+|.+.+..+.+... +.. .+...+++++.|+++||+||||.++..
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~- 92 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT- 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH-
Confidence 3346667778888888888888888888888888776654332 222 233356789999999999999986554
Q ss_pred HHHHHHHHHHhcCCccCCccCCccchh-----hhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHH
Q 011925 97 SVLVAVSFSSVFGGCMPCRILSTSTLK-----VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF 171 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~ 171 (475)
.....++..+... .| +.... ..++..+ .+.+++.+...++..++..|..| +++|++..++...+
T Consensus 93 ~~~~~~~~~l~~~--~~-----~~~~~~~~~~~~l~~~R---~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~~ 161 (434)
T PRK15075 93 LSIMASGTLLIAF--VP-----GYATIGLAAPLLVLLGR---LLQGFSAGVELGGVSVYLAEIAT-PGRKGFYTSWQSAS 161 (434)
T ss_pred HHHHHHHHHHHHh--CC-----cHHHHHHHHHHHHHHHH---HHhhccccccHHHHHHHHHhhCC-cccchHHHHHHHHH
Confidence 4444444333221 12 11100 0112222 36777777776667788999987 78999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchh
Q 011925 172 TMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL 251 (475)
Q Consensus 172 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (475)
..+|..+++.++..+...+.... ....+||+.|++......+. .+.....||+++..+++++.+.++.+++..|+++
T Consensus 162 ~~~g~~~g~~~g~~l~~~~~~~~--~~~~gWr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (434)
T PRK15075 162 QQVAVVFAALLGYLLNQWLSPAQ--MAEWGWRIPFLIGCLIVPFI-FLIRRSLEETEEFLARKHRPSMREIFRSLAANWR 238 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHH--HhccchHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHhhhccccccHHHHHHHhHH
Confidence 88888777777666544321100 02468999998754433222 2222233443211111111122333455556655
Q ss_pred HHHH-HHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHH
Q 011925 252 YYQV-ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 329 (475)
Q Consensus 252 ~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~ 329 (475)
.+.. ....++.....+....|.|.|+++..|++..+.++......++.+++.++.+++ +|+++ |+....+....++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~--r~~~~~~~~~~~~ 316 (434)
T PRK15075 239 IVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGR--RPVLIAFTVLAIL 316 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHH
Confidence 4433 233334445566778899999998889987776666666667777888877765 44444 4544444333222
Q ss_pred -HHHHHhhc-CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHH-HHHHHHHHHHHHHHHHHhcc
Q 011925 330 -CGAGILIL-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTL-SFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 330 -~~~~~~~~-~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~ig~~ig~~l~~~~~~ 405 (475)
........ ...+.........+.+++.+...+....+..+..|++.+| ...++. ++...+++.+++.+.+.+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg--~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 317 TAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRT--AGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccc--hheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 21111111 2222222223334455666666555556667777888888 555553 44444456667777766543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-22 Score=203.43 Aligned_cols=362 Identities=11% Similarity=0.085 Sum_probs=212.5
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHcC--CChh--HHHH--HHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIG--LSPR--GAAA--VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g--~s~~--~~g~--i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~ 99 (475)
.+.-.+|.+....+..+.....|..-++++ .++. .++. +.++..+...++++++|+++||+||||.+ ..+.++
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l-~~~~~l 96 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL-AITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHH
Confidence 344556777777777777666665555543 3332 1222 25777788999999999999999999985 445555
Q ss_pred HHHHHHHhcCCccCCccCCccch--hhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHH
Q 011925 100 VAVSFSSVFGGCMPCRILSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (475)
Q Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (475)
++++.++... .| +... .+....+.+...+.|++.+...++..+++.|..| +++|++..++...+..+|..
T Consensus 97 ~~i~~~~~a~--~~-----~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~G~~ 168 (490)
T PRK10642 97 MSISTFCIGL--IP-----SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP-DRKRGFMGSWLDFGSIAGFV 168 (490)
T ss_pred HHHHHHHHHh--cc-----cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHH
Confidence 5555443321 22 1110 1111112222237788888888888899999987 68899999988888888887
Q ss_pred HHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc---c--C-CC----cchHHHHHHHH
Q 011925 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG---L--R-GN----SHARISWAYWF 247 (475)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~---~--~-~~----~~~~~~~~~l~ 247 (475)
+++.+...+...+.... ...++||+.|++.++++++..++ ....||+++..+ + + ++ ++.+.++++++
T Consensus 169 lg~~~~~~~~~~~~~~~--~~~~gWR~~f~i~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (490)
T PRK10642 169 LGAGVVVLISTIVGEAN--FLDWGWRIPFFIALPLGIIGLYL-RHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIA 245 (490)
T ss_pred HHHHHHHHHHHhcCHHH--hcCccHHHHHHHHHHHHHHHHHH-HHcCCCChhHHHHHHhhhhhccccccccccCCHHHHH
Confidence 77766555443322100 02469999999876666554443 345666532100 0 0 00 01123456666
Q ss_pred hc-hhHHH-HHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHH
Q 011925 248 KK-ILYYQ-VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGG 324 (475)
Q Consensus 248 ~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~ 324 (475)
++ ++.+. .....++....++....|+|.|+++..|++............++.+++.++.+++ +|+++ |+.+..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~~~~~~ 323 (490)
T PRK10642 246 TKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGR--RPFVILGS 323 (490)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 53 22222 2223334445667788899999988888877655555555566677777776665 44444 55555555
Q ss_pred HHHHH-HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH-HHHHHHHHHHHHHHHHHH
Q 011925 325 VLWVF-CGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 325 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~ig~~ig~~l~~~ 402 (475)
....+ +...+.....++...+++..++.+++.+...+....+..+..|++.+| ...|+ +++ ...++.+++.+.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg--~~~g~~~~~-~~~~g~~~p~i~g~ 400 (490)
T PRK10642 324 VALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRY--SALAAAFNI-SVLVAGLTPTLAAW 400 (490)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccch--HHHHHHHHH-HHHHHHHHHHHHHH
Confidence 43332 222222222223344444555666665555554555555678888888 66665 444 34556777777776
Q ss_pred hc
Q 011925 403 YQ 404 (475)
Q Consensus 403 ~~ 404 (475)
+.
T Consensus 401 l~ 402 (490)
T PRK10642 401 LV 402 (490)
T ss_pred HH
Confidence 54
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-22 Score=206.30 Aligned_cols=325 Identities=11% Similarity=0.061 Sum_probs=215.3
Q ss_pred HcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHH
Q 011925 53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF 132 (475)
Q Consensus 53 ~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 132 (475)
|.++++.+.|++.+.+.+...+.+++.|+++||+||||.+ ..+.+...++..+.. ......... .+..+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l-~~~~~~~~~~~~~~~-------~~~~~~~~~-l~~~r-- 138 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI-GIGMFLSSVISIVIP-------WAAGGGIAL-VVFCR-- 138 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh-HHHHHHHHHHHHHHH-------HHHHcCchH-HHHHH--
Confidence 3478999999999999999999999999999999999974 444544444433221 000111222 22222
Q ss_pred HHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchH-HHHHHHHHHHHH
Q 011925 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE-NQYRWIAYSSIF 211 (475)
Q Consensus 133 ~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 211 (475)
.+.|++.+...+....++++..+ +++|+++.++...+..+|.++++.+.+.+.. . .+||+.+++.++
T Consensus 139 -~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~----------~~~gw~~~f~i~~~ 206 (465)
T TIGR00894 139 -VIQGLAQGSVSPATHKIIVKWAP-PKERSRLLGMSTSGFQLGTFIFLPISGWLCE----------SWGGWPMIFYVFGI 206 (465)
T ss_pred -HHHHHhcccchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccCCCCeehhhhhH
Confidence 26778888888888888999886 7899999999999888888887777665542 3 389999998888
Q ss_pred HHHHHHHHHhhccccccccccc--------------CC--CcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHH
Q 011925 212 IGCCFVGIFLSRTEEPRLKMGL--------------RG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (475)
Q Consensus 212 ~~~i~~~~~~~~~~e~~~~~~~--------------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
++++..++++...+|+++..++ ++ +.+.+.++++++++++++...+..++.....+...+|+|.
T Consensus 207 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 286 (465)
T TIGR00894 207 VGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPT 286 (465)
T ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766665555443221100 00 0111235788999999998888888888888888999999
Q ss_pred HHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhh--HH----HHHHHHHHHHHHHHH--HhhcCCchHHHHH
Q 011925 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL--KA----YYSAGGVLWVFCGAG--ILILPMNMSAFMY 346 (475)
Q Consensus 276 y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~--k~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 346 (475)
|+.+..|.+..+.++...+..++.+++.++.+++ +|+.+|. ++ .+..+......+... ..... .+.+..+
T Consensus 287 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 365 (465)
T TIGR00894 287 FISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS-AAFYLTI 365 (465)
T ss_pred HHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHH
Confidence 9999889988888877777777888888888775 4444332 11 111121111111111 11111 2333333
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 347 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+...+.+.+.+...+...+...+..|+ ..| ...++.++...+++.+++.+.+.+.
T Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g--~~~g~~~~~~~l~~~i~p~l~g~~~ 420 (465)
T TIGR00894 366 IILTLANAVSSGPLAGVLINSLDLAPR-FLG--FIKGITGLPGFIGGLIASTLAGNIL 420 (465)
T ss_pred HHHHHHHHHhhhhhhhhhhchhhcChh-HHH--HHHHHHHHHHHHHHHHHHHhhheee
Confidence 334444444444444444444444443 677 8999999999999999998888765
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-22 Score=194.83 Aligned_cols=320 Identities=16% Similarity=0.169 Sum_probs=244.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcC
Q 011925 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (475)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~ 109 (475)
.+..+............+|.+.++.|.++.+.+++.+...+...+.+|+.|+++||+||||. +..+.+...++......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~-~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV-LLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh-hHHHHHHHHHHHHHHHH
Confidence 34456667777788888999998889999999999999999999999999999999999996 55566665555543331
Q ss_pred CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
. .+.+...+.. .+.+++.+...++..++..|..+ +|+|++..++......+|..+++.+...+.+
T Consensus 84 -------~--~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 148 (352)
T cd06174 84 -------A--SSLWLLLVGR----FLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAE- 148 (352)
T ss_pred -------h--ccHHHHHHHH----HHHHcccccccHhHHHHHHHhCC-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1 1222222222 26777788888888999999987 6899999999999999999998888777653
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhh
Q 011925 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (475)
..+|++.+++.+++.++..+...+. + |.++...+..++........
T Consensus 149 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~~~~~~~ 194 (352)
T cd06174 149 ---------SLGWRWLFLILAILGLLLALLLLFL-L------------------------RLLLLLALAFFLLSFGYYGL 194 (352)
T ss_pred ---------HhhHHHHHHHHHHHHHHHHHHHHHH-H------------------------HHHHHHHHHHHHHHhHHHHH
Confidence 3468988887776666555444322 1 45566666667777777888
Q ss_pred hHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHH-HHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 011925 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILPMNMSAFMYV 347 (475)
Q Consensus 270 ~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (475)
..+.|.|..+..|.++.+.+.......++..++.++.+++ +|.++ |+ .+..+..+..++.......+ +.+...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~ 270 (352)
T cd06174 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--RRLLLLIGLLLAALGLLLLALAP--SLALLLV 270 (352)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhc--cHHHHHH
Confidence 8999999988778888877877777788888888887765 44444 45 67777777777766555543 4556667
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 348 LAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 348 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
...+.|++.+...+....+..+..|++++| ..+|+.+...+++..+++.+.+.+.+
T Consensus 271 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 271 ALLLLGFGLGFAFPALLTLASELAPPEARG--TASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHHHHHHhccchhHHHHHHhhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788899999998888888988888989999 89999999999999999999888764
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-22 Score=194.94 Aligned_cols=352 Identities=11% Similarity=-0.022 Sum_probs=225.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCcc
Q 011925 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (475)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~ 112 (475)
-+..++...+..+.+|.+.++.|+|+.+.|++.+...+...+..|+.|++.||+||||. +..+..+++++..+..
T Consensus 12 f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~-~~~g~~l~~~g~~l~~---- 86 (410)
T TIGR00885 12 FALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG-ILLGLFLYALGAFLFW---- 86 (410)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHH----
Confidence 34445666677788888877779999999999999999999999999999999999987 5566666666654332
Q ss_pred CCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011925 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192 (475)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 192 (475)
+ .....+. +.+...+ .+.+.|.+..+.+.++++.+..+ +++|++..+..+....+|..+++.+..++......
T Consensus 87 ~--~~~~~~~-~~~l~~~---~l~G~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~ 159 (410)
T TIGR00885 87 P--AAEIMNY-TLFLVGL---FILTAGLGFLETAANPYILVMGP-ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLP 159 (410)
T ss_pred H--HHhhccH-HHHHHHH---HHHHhhHHHHHhhhhHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1 0001122 2222222 36788899999988888888775 67788888999999999999998888777642100
Q ss_pred C-Cc---------------cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHH
Q 011925 193 K-TH---------------ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVA 256 (475)
Q Consensus 193 ~-~~---------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 256 (475)
. +. ..+..+||+++++.+.+.++..++.. ..++|+.+++++++.+.++..++++|||+++...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (410)
T TIGR00885 160 HQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDAKQISFSASLSRLARIRHYREGV 238 (410)
T ss_pred cchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccccccccchhhHHHHHhChhHHHHH
Confidence 0 00 00235799999888776665544432 2233221111122223344566788999888766
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhc-ccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH
Q 011925 257 LVYMLTRLVVNVSQAYLAFYVINDL-RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 334 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~ 334 (475)
+..++.........+|++.|..+.. +.+....+.+.........++.++.+++ +|+.+ |+.+.+.....++..++.
T Consensus 239 l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~--~~~l~i~~~~~~~~~ll~ 316 (410)
T TIGR00885 239 IAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAA--HKVLMAYAIIGMALCLGS 316 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHH
Confidence 6666665566667889999987532 3332222222233233445566665554 44444 556666666656555554
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 011925 335 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 406 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~ 406 (475)
.+.+ +.. ......+.|++.+..+|...+...+..+++.+. ...++ .+ .-+|+++.|.+.+.+.+.
T Consensus 317 ~~~~--~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~--~s~~l-~~-~~~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 317 IFAG--GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKY--GAAGL-VM-AIIGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHcC--ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hHHHH-HH-HHhccchHHHHHHHHHHH
Confidence 4433 222 245567788888888898888877777766653 12222 22 238888888888887753
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=204.53 Aligned_cols=345 Identities=12% Similarity=0.032 Sum_probs=221.7
Q ss_pred ehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHH
Q 011925 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (475)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~ 106 (475)
....+..+...........++|.+.++.|.++.+.|++.++..+...+.+++.|+++||+||||.+ ..+.+...++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~ 98 (398)
T TIGR00895 20 ILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL-LWSILLFSVFTLL 98 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH-HHHHHHHHHHHHH
Confidence 333344444455555566667777777799999999999999999999999999999999998874 4455555554433
Q ss_pred hcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011925 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (475)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (475)
... . .+.+.. ...+ .+.+++.+...++..+++.+..+ +++|++..+.......+|..+++.+.+.+
T Consensus 99 ~~~-------~--~~~~~~-~~~~---~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 99 CAL-------A--TNVTQL-LILR---FLAGLGLGGLMPNLNALVSEYAP-KRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHH-------c--cchHHH-HHHH---HHHhcccccchhhHHHHHHHHcC-HHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 321 1 122222 2222 26677777777888889999886 67899999999888888888887777665
Q ss_pred HHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccc---c-------------------------ccCCC-c
Q 011925 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---M-------------------------GLRGN-S 237 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~---~-------------------------~~~~~-~ 237 (475)
.. ..+|++.+++.+++.++..++.+...||+++. + +++++ +
T Consensus 165 ~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (398)
T TIGR00895 165 IP----------VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQG 234 (398)
T ss_pred hh----------cccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccc
Confidence 42 34788887776555544444444445543210 0 00000 1
Q ss_pred chHHHHHHHHhch---hHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHh
Q 011925 238 HARISWAYWFKKI---LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTG 313 (475)
Q Consensus 238 ~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 313 (475)
+.++..+.+++++ ..+...+...+..........+.| ++.++.|.++.+.+.......++.+++.++.+++ +|.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (398)
T TIGR00895 235 TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLG 313 (398)
T ss_pred hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1122223333333 223333344444555566677788 5556678887777777777777788888877665 3333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHH
Q 011925 314 QRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 393 (475)
Q Consensus 314 ~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~ 393 (475)
+ |+. ..+.....+........ .++.+..+...++.|++.+...+....+..+..|++.+| ...|+.+...++|.
T Consensus 314 ~--~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~ 387 (398)
T TIGR00895 314 P--RVT-ALLLLLGAVFAVLVGST-LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRA--TGVGWAIGIGRLGA 387 (398)
T ss_pred h--HHH-HHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHH
Confidence 3 332 23322222222222221 224445566677888988888888888888888999999 88999999999999
Q ss_pred HHHHHHHHHh
Q 011925 394 GIAVYVLQSY 403 (475)
Q Consensus 394 ~ig~~l~~~~ 403 (475)
.+|+.+.+.+
T Consensus 388 ~~g~~~~G~l 397 (398)
T TIGR00895 388 IIGPILAGYL 397 (398)
T ss_pred HHHHHhHHhc
Confidence 9999887754
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=206.24 Aligned_cols=355 Identities=12% Similarity=0.008 Sum_probs=212.9
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
.++......++.+...+........+|.+.++.|+|+.+.+++.+...+...+..++.|+++||+||||.+ ..+.+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~ 96 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM-VISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHH
Confidence 34455567777777778888887778887777799999999999999999999999999999999998874 44555444
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
++...... . .+.+.. ...+ .+.+++.+.......+++.+..+ +++|++..+....+..+|..+++.
T Consensus 97 ~~~~~~~~-------~--~~~~~l-~~~~---~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~ 162 (496)
T PRK03893 97 VGTLACGF-------A--PGYWTL-FIAR---LVIGMGMAGEYGSSATYVIESWP-KHLRNKASGFLISGFSIGAVVAAQ 162 (496)
T ss_pred HHHHHHHH-------H--hHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433221 1 122222 2222 25677777777777788888876 788999999988888888888777
Q ss_pred HHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-CCCcchHHHHHHHHhch-hHHH-----
Q 011925 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKI-LYYQ----- 254 (475)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~l~~~~-~~~~----- 254 (475)
+...+.. ..+||+.+.+..+..++ .++.....||+++.+++ +++.+.++..+...+++ ....
T Consensus 163 ~~~~l~~----------~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (496)
T PRK03893 163 VYSLVVP----------VWGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTL 231 (496)
T ss_pred HHHHHhc----------cCCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHH
Confidence 7665542 35899888764333332 23333344553221111 11111111111111100 0000
Q ss_pred -------------------H-----------------------------HHHHHHHHHHHHhhhHHHHHHHhhhcccccc
Q 011925 255 -------------------V-----------------------------ALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 286 (475)
Q Consensus 255 -------------------~-----------------------------~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~ 286 (475)
. ....+...........++|.|++++.|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~ 311 (496)
T PRK03893 232 AAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPH 311 (496)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHH
Confidence 0 0000000000112456889999888899888
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhh
Q 011925 287 AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGIS 365 (475)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~ 365 (475)
+.+.+.....++.+++.++.+++ +|+++ |+.+..+..+..+...........+.+......++.+.......+....
T Consensus 312 ~~g~~~~~~~~~~~~g~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (496)
T PRK03893 312 TVANVLFFSGFGAAVGCCVGGFLGDWLGT--RKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPK 389 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHH
Confidence 88877777778888888887765 33333 4555555544444433332222233333223333322222122233344
Q ss_pred hhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 011925 366 MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 406 (475)
Q Consensus 366 ~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~ 406 (475)
+..+..|++++| ..+++......+|+.+|+.+.+.+.+.
T Consensus 390 ~~~~~~~~~~~g--~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 390 LIGGYFDTEQRA--AGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred HHHhhCCHHHhh--cccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 556667778888 778888888889999999888877643
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-22 Score=194.17 Aligned_cols=344 Identities=6% Similarity=-0.051 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCc
Q 011925 37 DITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~ 115 (475)
...+.+..+..+.+-+ |+|+|+.+.+++.++..+..++.+.+.|++.||+|.||...+ +.+...+...+... ..+
T Consensus 47 F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~-~~ll~~i~~~~~~~-a~~-- 122 (462)
T PRK15034 47 FCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF-STAILIIPCVWLGI-AVQ-- 122 (462)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH-HHHHHHHHHHHHHH-HHc--
Confidence 4444555555555555 459999999999999999999999999999999999997544 44444444332220 000
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHH-----hh
Q 011925 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-----VS 190 (475)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~ 190 (475)
....+.....+... +.+++ +....+....++++.+ ++||+++.++.....++|..+...+.++++. .+
T Consensus 123 -~~~~s~~~lli~r~----l~Gig-g~~f~~~~~~vs~wfp-~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~ 195 (462)
T PRK15034 123 -NPNTPFGIFIVIAL----LCGFA-GANFASSMGNISFFFP-KAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFL 195 (462)
T ss_pred -ccCCCHHHHHHHHH----HHHHH-HHhHHHHHHHHHHHCC-HhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 00112222222222 56665 4555667777888876 7889999999977777888777777665442 22
Q ss_pred ccCCc---cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 011925 191 TAKTH---ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVN 267 (475)
Q Consensus 191 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (475)
++... .+...+|+...++..++.++..++.++..++++. ++.+ .++.++.+|||+.|...+.+++....+.
T Consensus 196 G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----~~~~-~~~~~~vlk~~~~Wllslly~~tFG~fv 269 (462)
T PRK15034 196 GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----SRAS-IADQLPVLQRLHLWLLSLLYLATFGSFI 269 (462)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----cccC-HHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 21110 0124578888777767666666666555444221 1222 3455678999999999999988887777
Q ss_pred hhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHH-HhhcCC---ch
Q 011925 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAG-ILILPM---NM 341 (475)
Q Consensus 268 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~-~~~~~~---~~ 341 (475)
++..++|.|.++... .........+..+...+..++.|++ .||+ +|.+.++.+.++++... +...+. .+
T Consensus 270 g~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~L---ADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~ 344 (462)
T PRK15034 270 GFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAI---SDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGN 344 (462)
T ss_pred HHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHH---HHhcCchHHHHHHHHHHHHHHHHHHHHhccccccH
Confidence 888899999877542 2111111111223344444555544 5555 56666666655554322 223332 23
Q ss_pred HHHHHHHH----HHHHHHHHHHHHhHhhhhhh-----------------hccCCCccchhhhhHHHHHHHHHHHHHHHHH
Q 011925 342 SAFMYVLA----IFVGIANALMMVTGISMQNV-----------------LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400 (475)
Q Consensus 342 ~~~~~~~~----~l~g~g~~~~~~~~~~~~~~-----------------~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~ 400 (475)
.+...... +..|+|+|..+-....+..+ ...+++.| .+.|+.+....+|+.+-|.++
T Consensus 345 ~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g--~v~G~v~a~G~~Ggf~~p~~~ 422 (462)
T PRK15034 345 FIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETA--AALGFISAIGAVGGFFIPQAF 422 (462)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHH--HHHHHHHHHHHcccchhhHHH
Confidence 33333322 33456666555322222111 00112344 777877777777777777776
Q ss_pred HHhc
Q 011925 401 QSYQ 404 (475)
Q Consensus 401 ~~~~ 404 (475)
+...
T Consensus 423 g~~~ 426 (462)
T PRK15034 423 GMSL 426 (462)
T ss_pred HHHH
Confidence 6654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-22 Score=196.68 Aligned_cols=355 Identities=13% Similarity=0.037 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHHHHHc--CCChhHHHHHHHH-----HHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcC
Q 011925 37 DITAACWFTYLLLFLTDI--GLSPRGAAAVMLS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~--g~s~~~~g~i~~i-----~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~ 109 (475)
.......+...+...++. +.+..+.+.+.+. ..+...+.+|+.|+++||+||||+++ .+.++..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~-~~~~~~~~~~~~~~~ 84 (394)
T TIGR00883 6 WFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLV-ITLLMMGIGTLLIGL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHH-HHHHHHHHHHHHHhh
Confidence 344444443333333333 3556666665544 33444568899999999999999854 455555555433321
Q ss_pred CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
.+. .. ... .+....+.+...+.+++.+...++..+++.|..+ +++|++..+....+..+|.++++.+...+...
T Consensus 85 --~~~-~~-~~~-~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~ 158 (394)
T TIGR00883 85 --LPS-YA-TIG-IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP-PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158 (394)
T ss_pred --CCC-hh-hhH-HHHHHHHHHHHHHHHhhccccccccHHHhhhcCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 120 00 000 0111112222236677777777777888889886 78899999999999889988887776555432
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cCCCcchHHHHHHHHhchh--HHHHHHHHHHHHHHH
Q 011925 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKIL--YYQVALVYMLTRLVV 266 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~ 266 (475)
++... ....+||+.+.+.+++.++...+. ...+|+++.++ ++++++.+++.++.+|+++ ++......++.....
T Consensus 159 ~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T TIGR00883 159 LGDDA--LLEWGWRIPFLVSAVLVLIGLYLR-RNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTF 235 (394)
T ss_pred cCHHH--hhccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 22100 024589999887766655544433 33445332211 1112223345666777765 555555666666667
Q ss_pred HhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH-HHHHHH-hhcCCchHH
Q 011925 267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV-FCGAGI-LILPMNMSA 343 (475)
Q Consensus 267 ~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~-~~~~~~-~~~~~~~~~ 343 (475)
.....+.|.|.+++.|.++.+.+.......++.+++.++.+++ +|+++ |+.+..+..+.. .+.... .....++.+
T Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
T TIGR00883 236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGR--RPVLIIFTVLAALLAVPLLMALLDSGSFT 313 (394)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 7778899999988888887777766666667777777776664 34443 444443333222 221122 222223445
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH-HHHHHHHHHHHHHHHHHHhcc
Q 011925 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 344 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~ig~~ig~~l~~~~~~ 405 (475)
.......+.+++.+...+....+..+..|++.+| ...++ +++...+|..+++.+.+.+.+
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 314 LFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRY--TGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCcccee--eEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 5555566778888888887888888888888888 55665 456666777788877776653
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-21 Score=190.05 Aligned_cols=344 Identities=11% Similarity=-0.019 Sum_probs=214.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCChhHHHHH--HHHHHHHhhhhhhhhhh-hhhccCCcchhHHHHHHHHHH-HHHHhc
Q 011925 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAV--MLSGQIADGFATIFIGE-LIDRFGHFKIWHGAGSVLVAV-SFSSVF 108 (475)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i--~~i~~l~~~i~~p~~G~-l~Dr~Grr~~~l~~~~~~~~~-~~~~~~ 108 (475)
-+..++.+++..+++|.+++|.|.|+.++|+. .+...+...+..|++++ .+||+||||.|++...+.... ...+..
T Consensus 10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~ 89 (390)
T TIGR02718 10 YLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLAL 89 (390)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHc
Confidence 46667888899999999999999999999997 46678888899999955 799999999987665444332 222221
Q ss_pred CCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011925 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (475)
Q Consensus 109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (475)
. .+ ......+..... .......+..++...++..+..+ +++++...+.+..+..+|.++++.....+.+
T Consensus 90 ~--~~----~~~~~~~~~~~~----~~~~~~~a~~d~~~d~~~~~~~~-~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~ 158 (390)
T TIGR02718 90 V--GP----DVAGAGWAVGLL----ACASLASATQDIATDGMAAEHFN-GRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG 158 (390)
T ss_pred C--Cc----chhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCC-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 111111211111 13445566667777777666554 5666777777777777788777765555543
Q ss_pred hhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHh
Q 011925 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNV 268 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (475)
..+||..+++.+.+.++..+..++..||+++ ++ +++++..+++++.+|||.++......++.......
T Consensus 159 ----------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 226 (390)
T TIGR02718 159 ----------KFGQRPAFLLVACVPLASLVCVLWLKDRAVA-SP-EAPLARRASLFRFFRRPLAWSLLALALLSAMTAVS 226 (390)
T ss_pred ----------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC-cc-ccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence 4589999998887776655554444333221 11 11122344677889999887777766777676777
Q ss_pred hhHHHHHHHhhhcccccchhhhHhHHHH-HHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhc----CCchH
Q 011925 269 SQAYLAFYVINDLRMGQSAKALVPAIIY-ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILIL----PMNMS 342 (475)
Q Consensus 269 ~~~~~~~y~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~----~~~~~ 342 (475)
...+.+.|+.| .|+++++.+....... ...+++.++.+++ +|+++ |+....+.............. ...+.
T Consensus 227 ~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (390)
T TIGR02718 227 GFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGL--WRTFILGVGLAGSLALLWFAQAAFWLAPGI 303 (390)
T ss_pred HHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHcccCCcH
Confidence 77888889877 5999888777655543 3445556665554 44443 455555544432221211111 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhccC-CCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 343 AFMYVLAIFVGIANALMMVTGISMQNVLVGE-DLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 343 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
...+....+.+++.+...+.......+..++ +.+| ..++..+...++|..+|+.+.+.+.
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 304 AVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAG--TDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2323333444555666655555554444444 6777 7778877788888888887777664
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=203.75 Aligned_cols=369 Identities=12% Similarity=0.013 Sum_probs=214.5
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHc--------CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI--------GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWH 93 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l 93 (475)
..+..+..+++.+..+......++.++.+.+++ +.++.+.|++.+++.+...++++++|+++||+||||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~ 89 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 344455666777777777777777777666654 788999999999999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHhcCCc--cCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHH
Q 011925 94 GAGSVLVAVSFSSVFGGC--MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF 171 (475)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~ 171 (475)
+. ..+.+++........ .+............++.++ .+.|++.+...+...+++.|+.+ +++|+++.+..+.+
T Consensus 90 ~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R---~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~ 164 (479)
T PRK10077 90 IA-AVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR---IIGGIGVGLASMLSPMYIAEIAP-AHIRGKLVSFNQFA 164 (479)
T ss_pred HH-HHHHHHHHHHHHhhccccccccccchhHHHHHHHHH---HHHhhhHhHHhhHHHHHHHhhCC-hhhhhHHHHHHHHH
Confidence 54 444444433222100 0000001111122223333 37788888888889999999997 68899999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---ccCCC-----------c
Q 011925 172 TMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GLRGN-----------S 237 (475)
Q Consensus 172 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~---~~~~~-----------~ 237 (475)
..+|.++++.++..+........ ....+||+.+++.+++.++..+.. +..||+++.. +++++ .
T Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~--~~~~gWr~~f~~~~~~~~~~~~~~-~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~ 241 (479)
T PRK10077 165 IIFGQLVVYFVNYFIARSGDASW--LNTDGWRYMFASEAIPALLFLMLL-YFVPETPRYLMSRGKQEQAEGILRKIMGNT 241 (479)
T ss_pred HHHHHHHHHHHHHHHhccCcccc--cccCChHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHcCCHHHHHHHHHHHcCCh
Confidence 88888877665544432110000 024689999988777666655443 4566653210 00000 0
Q ss_pred c---hHHHHHHHHhc-----hhHHHHHHHHHH--------H-HHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHH
Q 011925 238 H---ARISWAYWFKK-----ILYYQVALVYML--------T-RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300 (475)
Q Consensus 238 ~---~~~~~~~l~~~-----~~~~~~~~~~~~--------~-~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~ 300 (475)
+ ..+..++..++ +.++........ . .........|.|.+. +..|.+............+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~ 320 (479)
T PRK10077 242 LATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIF-KTLGASTDIALLQTIIVGVINL 320 (479)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHH
Confidence 0 01112222221 111111000000 0 011112223345444 4567765544455455566667
Q ss_pred HHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-Cc-hHHHHHHHHHHHHHHHHHH-HHhHhhhhhhhccCCCc
Q 011925 301 IVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MN-MSAFMYVLAIFVGIANALM-MVTGISMQNVLVGEDLS 376 (475)
Q Consensus 301 ~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~g~g~~~~-~~~~~~~~~~~~~~~~~ 376 (475)
++.++.+++ +|+++ |+.+..+..+.+++...+.... .+ ..........+.+.+.+.. .+....+..+..|++.+
T Consensus 321 i~~~~~g~l~dr~g~--r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 398 (479)
T PRK10077 321 TFTVLAIMTVDKFGR--KPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 398 (479)
T ss_pred HHHHHHHHHHHHhcC--hHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHH
Confidence 777776664 44443 5666777777666655543321 11 1122233344445544432 24556777778888888
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 377 GCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 377 G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
| ...|+.+...+++..+++.+....
T Consensus 399 ~--~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 399 G--KALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8 888888889999998887766544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=203.96 Aligned_cols=357 Identities=12% Similarity=-0.000 Sum_probs=227.4
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~ 105 (475)
.+..+++.+........+...+|...++.|++..+.+++.++..+...++.+++|+++||+|||+.+++ +.++.+++.+
T Consensus 169 ~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii-~lil~~i~~l 247 (742)
T TIGR01299 169 FFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI-CLSVNGFFAF 247 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHHH
Confidence 345555555555555566667777777779999999999999999999999999999999999998555 4444433333
Q ss_pred HhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHH
Q 011925 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (475)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (475)
+... .+ +.+. ++..+ .+.+++.+...+...+++.+..+ +++|++..++...+..+|.++++.++..
T Consensus 248 l~af--a~-------s~~~-llv~R---~l~G~g~g~~~p~~~~~isE~~p-~~~Rg~~~g~~~~~~~iG~ila~~la~~ 313 (742)
T TIGR01299 248 FSSF--VQ-------GYGF-FLFCR---LLSGFGIGGAIPIVFSYFAEFLA-QEKRGEHLSWLCMFWMIGGIYAAAMAWA 313 (742)
T ss_pred HHHH--Hh-------hHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2220 11 2222 22233 26788888887888889999987 7889999999888888998888877766
Q ss_pred HHHhhccC---CccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccc---c-c-------------cCCC----c----
Q 011925 186 VFSVSTAK---THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---M-G-------------LRGN----S---- 237 (475)
Q Consensus 186 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~---~-~-------------~~~~----~---- 237 (475)
+....++. +......+||+.+++.++.+++..++ ++..||++.- + + .+.+ .
T Consensus 314 il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~-~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~ 392 (742)
T TIGR01299 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA-LTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVF 392 (742)
T ss_pred HHHhccchhccccccccccHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHH
Confidence 65432210 00001347999988876666555433 4456665310 0 0 0000 0
Q ss_pred -------------------ch------------------HHHHHHHHhchh---HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011925 238 -------------------HA------------------RISWAYWFKKIL---YYQVALVYMLTRLVVNVSQAYLAFYV 277 (475)
Q Consensus 238 -------------------~~------------------~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~ 277 (475)
+. ...++++++.+. .+.+.+..++..+.++++..|+|..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~ 472 (742)
T TIGR01299 393 SVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMI 472 (742)
T ss_pred HHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 002333443322 22344556667778889999999765
Q ss_pred hhh--c---------------------------------------cc-----c---------------c-----------
Q 011925 278 IND--L---------------------------------------RM-----G---------------Q----------- 285 (475)
Q Consensus 278 ~~~--~---------------------------------------g~-----~---------------~----------- 285 (475)
.+. . |+ . .
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 552 (742)
T TIGR01299 473 KHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFI 552 (742)
T ss_pred HHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchh
Confidence 331 0 00 0 0
Q ss_pred -------------------------------------c-----hhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHH
Q 011925 286 -------------------------------------S-----AKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSA 322 (475)
Q Consensus 286 -------------------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~ 322 (475)
. .......+..++.+++.++.+++ +|+++ |+++.+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GR--r~~l~~ 630 (742)
T TIGR01299 553 DTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGR--LRMLAG 630 (742)
T ss_pred hhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHH
Confidence 0 00122333446667777777764 55555 667777
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 323 GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
+.++.+++.+++.+.+ +...+++..++.+++.+..++....+..+..|.+.+| ..+|+.+...++|+.+|+.+.+.
T Consensus 631 ~~~lsai~~ll~~~~~--s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rg--ta~Gi~~~~~rlGaiigp~i~g~ 706 (742)
T TIGR01299 631 SMVLSCISCFFLSFGN--SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRA--TAFGFLNALCKAAAVLGILIFGS 706 (742)
T ss_pred HHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766555543 3333444455667766667777778888888888888 88999999999999999988876
Q ss_pred hc
Q 011925 403 YQ 404 (475)
Q Consensus 403 ~~ 404 (475)
+.
T Consensus 707 L~ 708 (742)
T TIGR01299 707 FV 708 (742)
T ss_pred HH
Confidence 54
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-22 Score=192.73 Aligned_cols=328 Identities=13% Similarity=0.101 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccc
Q 011925 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (475)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 121 (475)
...+.+|.+.+|.|.|..+.|++.++..+...+..|+.|+++||+||||..+ .+.+...++...... + +
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~---~-------~ 86 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVA-AGLLLIAAGILIRSA---P-------G 86 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHH-HHHHHHHHHHHHHHh---c-------c
Confidence 3456778888888999999999999999999999999999999999999854 444444444332221 1 1
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHH
Q 011925 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (475)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (475)
.+. +...+ .+.+++.+.......++..+.. +++|+++.+..+....+|..+++.+.+++.+.. ..+
T Consensus 87 ~~~-l~~~~---~~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~--------~~~ 152 (355)
T TIGR00896 87 TAL-LFAGT---ALIGVGIAIINVLLPSLIKRDF--PQRVGLMTGLYSMALMGGAALAAAATVPLAQHS--------GGH 152 (355)
T ss_pred HHH-HHHHH---HHHHHHHHHHhccchHHHHHhC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhh
Confidence 222 22222 2566666665555556666655 357999999998888889888887777765431 125
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc
Q 011925 202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL 281 (475)
Q Consensus 202 ~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 281 (475)
||+.+...+.+.++..... .+|.+++++++ +.+.+...++++|||.++...+...+..........|+|.|+++ .
T Consensus 153 w~~~f~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~ 227 (355)
T TIGR00896 153 WQQALAWWALPALLALLAW---IPQVRRRVAAN-QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-H 227 (355)
T ss_pred HHHHHHHHHHHHHHHHHHH---hhhhccccCCC-CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence 8888776655444333222 22222111111 11111234567889888776666666666677778899999976 5
Q ss_pred ccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH
Q 011925 282 RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMM 360 (475)
Q Consensus 282 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 360 (475)
|.+..+.+.......++.+++.++.+++ +|..+| |+...++..+.+++.+.+.+.+.+. .. ....+.|++.+..+
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~g~~~g~~~ 303 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQ-RGIVAVLAVLQLVGLCGLLFAPMHG-LW--AWALVLGLGQGGAF 303 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHhhhhH-HH--HHHHHHHHhhhhHh
Confidence 8888777777777788888888887775 444332 4555566666666655554443222 11 23567788888888
Q ss_pred HhHhhhhhhhc-cCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 361 VTGISMQNVLV-GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 361 ~~~~~~~~~~~-~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
+.......+.. ++++.| ..+++.+....++..+++.+.+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 304 PLALTLIGLRSRQAAQAA--ALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHHHHhccCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655544433 345556 67777777777777888877776653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-21 Score=195.39 Aligned_cols=353 Identities=12% Similarity=0.038 Sum_probs=220.8
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHHHHHHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVS 103 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr-~Grr~~~l~~~~~~~~~~ 103 (475)
.+......+...+.++....+++.|+++. |++..+.+++...+.....+..|+.|+++|| +||||.++ .+.+.+.++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~-~g~~~~~~g 94 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIV-LGAIVLAIG 94 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHH-HHHHHHHHH
Confidence 44444555667788888889999999886 9999999999999999999999999999999 99999854 455555555
Q ss_pred HHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCcc-chhhHhhHHHHHHHHHHHHHHHH
Q 011925 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAI 182 (475)
Q Consensus 104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~-~R~~~~~~~~~~~~~g~~~~~~~ 182 (475)
..++.. + .. ........+ .+.++|.+...+...+++.|..++++ +|.+..++.+.+.++|..+++.+
T Consensus 95 ~~~~~~---~----~~--~~~ll~~~~---~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l 162 (489)
T PRK10207 95 YFMTGM---S----LL--KPDLIFIAL---GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL 162 (489)
T ss_pred HHHHHH---h----cc--chhHHHHHH---HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH
Confidence 444331 1 11 111111112 25677778777777889999887544 45777888889999999998888
Q ss_pred HHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccc----ccccccccCCCc--ch-----------------
Q 011925 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE----EPRLKMGLRGNS--HA----------------- 239 (475)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----e~~~~~~~~~~~--~~----------------- 239 (475)
++.+.+ ..|||+.|++.++ +++..++.+...+ +.+.++++++.+ ..
T Consensus 163 ~g~l~~----------~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~ 231 (489)
T PRK10207 163 APVIAD----------KFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWL 231 (489)
T ss_pred HHHHHH----------hhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 877753 3589999887543 3333232222222 211011000000 00
Q ss_pred -----H------------------HH--HHHHHhchhHHHHHH--HHHHHHHHHHhhhHHHHHHHhhhcccccc----hh
Q 011925 240 -----R------------------IS--WAYWFKKILYYQVAL--VYMLTRLVVNVSQAYLAFYVINDLRMGQS----AK 288 (475)
Q Consensus 240 -----~------------------~~--~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~y~~~~~g~~~~----~~ 288 (475)
. +. .++.+|+|.+....+ ...+.+..+......++.|.++..+.+.. ..
T Consensus 232 ~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~ 311 (489)
T PRK10207 232 MHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINP 311 (489)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECH
Confidence 0 00 012344444332222 23334445555556777777653332210 11
Q ss_pred hhHhHHHHHHHHHHHHHHHH-HHHHhhhhH-----HHHHHHHHHHHHHHHHH-----hhcC---CchHHHHHHHHHHHHH
Q 011925 289 ALVPAIIYICSFIVSILLQE-MAWTGQRLK-----AYYSAGGVLWVFCGAGI-----LILP---MNMSAFMYVLAIFVGI 354 (475)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~-~~~~~~r~k-----~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~l~g~ 354 (475)
+.+..+..+..++.+++.++ ++|+++|.+ ..+.+|.++..++.+.. .... ..+.++.....++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 22323333444455666555 355555421 12456666655554322 1211 2345666677889999
Q ss_pred HHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 355 ANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 355 g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
|.+...+...++.....|++.+| ..+|++.+.+.+|+.+|+.+.....
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g--~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMG--FILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999 9999999999999999988877664
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-21 Score=190.29 Aligned_cols=335 Identities=10% Similarity=0.026 Sum_probs=197.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCc
Q 011925 33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (475)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~ 111 (475)
.|.....+++..++++.++++. |+|..++|++.++..+...+.+|++|+++||+||||+.+..+.+...+...+...
T Consensus 11 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~-- 88 (418)
T TIGR00889 11 SFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ-- 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--
Confidence 3445677788889999999886 9999999999999999999999999999999987665555555544444332220
Q ss_pred cCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhh----hc----ccCCCccchhhHhhHHHHHHHHHHHHHHHHH
Q 011925 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM----VN----CITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (475)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al----~~----~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (475)
. .+.+..+..+. +.+++.+.......++ .. |... ..+|.|..+ .+|.++++.++
T Consensus 89 -----~--~~~~~~~~~~~----l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~r~~G------~lG~~ig~~l~ 150 (418)
T TIGR00889 89 -----V--TTPAGMFPVLL----ANSLAYMPTIALTNSISYANLPQAGLDVVT-DFPPIRVMG------TIGFIAAMWAV 150 (418)
T ss_pred -----h--cCHHHHHHHHH----HHHHHHccHHHHHHHHHHHHHhhcCCCchh-cCCCeeeeh------hHHHHHHHHHH
Confidence 1 11222222222 3344333222222222 11 2222 223444333 35556655555
Q ss_pred HHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchH----HHHHHHHhchhHHHHHHHH
Q 011925 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR----ISWAYWFKKILYYQVALVY 259 (475)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~ 259 (475)
+.+ . ....|+. +++.+++.++..++. +..||++++++ +++.+.+ ...++++|||+++.+.+..
T Consensus 151 g~l-~---------~~~~~~~-f~~~~~~~~~~~~~~-~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 217 (418)
T TIGR00889 151 SLL-D---------IELSNIQ-LYITAGSSALLGVFA-LTLPDIPVAKS-TAKMSIKVMLGLDAFILFKNKRMAIFFFFS 217 (418)
T ss_pred HHh-c---------ccchhHH-HHHHHHHHHHHHHHH-hcCCCCCCCcc-ccccCHHHHhhhhHHHHhcCCCeeeHHHHH
Confidence 443 1 1223443 334444444444433 45566432211 1111111 2345688999887777666
Q ss_pred HHHHHHHHhhhHHHHHHHhhhccccc--------chhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 011925 260 MLTRLVVNVSQAYLAFYVINDLRMGQ--------SAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 330 (475)
Q Consensus 260 ~~~~~~~~~~~~~~~~y~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~ 330 (475)
++..........+++.|..+. |.++ ...+....+..++.+++.+..+++ +|+++ |+.+.++.....++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~--r~~l~~~~~~~~v~ 294 (418)
T TIGR00889 218 MLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI--KKVMLLSLVAWALR 294 (418)
T ss_pred HHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHH
Confidence 666555556667888887653 4332 333555555555556666665543 33333 67777777777766
Q ss_pred HHHHhhcCCc--hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHH-HHHHHHHHHHHHHHHHhcc
Q 011925 331 GAGILILPMN--MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLS-FLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 331 ~~~~~~~~~~--~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~ig~~ig~~l~~~~~~ 405 (475)
...+.....+ +.+.+++..++.|++.+...+....+..+..|++.+| ..+|+.+ ....+|..+|+.+.+.+.+
T Consensus 295 ~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g--~~~g~~~~~~~~lg~~iGp~l~G~l~~ 370 (418)
T TIGR00889 295 FGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA--SAQGLFTLMCNGFGSLLGYILSGVMVE 370 (418)
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5444442211 2234455677888888887777777888888999898 8888886 5567788888877776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=203.27 Aligned_cols=344 Identities=13% Similarity=0.016 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCC--------hhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 37 DITAACWFTYLLLFLTDIGLS--------PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s--------~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
..........++....+.+.+ ..+.|++.+++.+...+.+|+.|+++||+||||.++ .+..+..++..+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~ 119 (481)
T TIGR00879 41 GYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL-IIALLFVIGAILMG 119 (481)
T ss_pred ccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH-HHHHHHHHHHHHHH
Confidence 333444555556555554444 899999999999999999999999999999988754 44444555443332
Q ss_pred CCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011925 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (475)
Q Consensus 109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (475)
. .+ ..... +.++..+ .+.+++.+...+...+++.|..+ +++|++..++.+.+..+|..+++.+. ....
T Consensus 120 ~--~~----~~~~~-~~~~~~r---~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~ 187 (481)
T TIGR00879 120 L--AA----FALSV-EMLIVGR---VLLGIGVGIASALVPMYLSEIAP-KALRGALTSLYQLAITFGILVAYGFG-SGKV 187 (481)
T ss_pred H--hc----cccch-HHHHHHH---HHHHhhhhHHHhHHHHHHHccCC-hhhhhhhhhHHHHHHHHHHHHHHHHH-HHhh
Confidence 1 11 11111 1223333 26778888888888889999886 78899999999888888888877665 0001
Q ss_pred hhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccc---ccc--------------CCCc-chHH---------
Q 011925 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---MGL--------------RGNS-HARI--------- 241 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~---~~~--------------~~~~-~~~~--------- 241 (475)
.. ....+||+.+++.++..++..+. .+..+|++.. +++ ++++ +..+
T Consensus 188 ~~------~~~~~w~~~f~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 188 SL------NNTLGWRIPLGLQLIPAGLLFLG-LFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred cC------CCCccHHHHHHHHHHHHHHHHHH-HhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 11 12458999998865555444333 3445553210 000 0000 0000
Q ss_pred ---------HHHHHHhc-----hhHHHHHHHHHHHHH-HHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHH
Q 011925 242 ---------SWAYWFKK-----ILYYQVALVYMLTRL-VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306 (475)
Q Consensus 242 ---------~~~~l~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 306 (475)
.+++.++. ++.........+... .......+.|.+. ++.|++..+.+.......++.+++.++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (481)
T TIGR00879 261 SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVA 339 (481)
T ss_pred HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 01122221 111111112222212 2223344445444 5568877666666666667777788777
Q ss_pred HHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh---cCCch-----HHHHHHHHHHHHHHHHH-HHHhHhhhhhhhccCCCc
Q 011925 307 QEM-AWTGQRLKAYYSAGGVLWVFCGAGILI---LPMNM-----SAFMYVLAIFVGIANAL-MMVTGISMQNVLVGEDLS 376 (475)
Q Consensus 307 ~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~l~g~g~~~-~~~~~~~~~~~~~~~~~~ 376 (475)
+++ +|+++ |+.+.++..+..++...+.+ ...++ .+..+....+.+.+.+. ..+....+..+..|++.+
T Consensus 340 g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (481)
T TIGR00879 340 IFLVDRFGR--RPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR 417 (481)
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHH
Confidence 665 44444 56666666666555444431 11111 22222222333333332 223444555667788888
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 377 GCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 377 G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
| ...++.+...++|+.+++.+.+.+..
T Consensus 418 ~--~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 418 P--KGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 88999999999999999988877653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-21 Score=217.30 Aligned_cols=364 Identities=14% Similarity=0.021 Sum_probs=231.4
Q ss_pred CCCccceehccccchhHHHHHHHHHHHHHHHHH-HcCC--ChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHH
Q 011925 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLT-DIGL--SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG 96 (475)
Q Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~-~~g~--s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~ 96 (475)
..+.+....+.+..+..++........+..+.. +.+. +....+++.+++.+...+.+|++|+++||+||||++++..
T Consensus 5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~ 84 (1146)
T PRK08633 5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK 84 (1146)
T ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence 344555555556666665555444444444443 3444 4566899999999999999999999999999999854433
Q ss_pred HHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHH
Q 011925 97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~ 176 (475)
.+.........+. . . ....+. +...+ .+.+++.+...++..++++++.+ +++|+++.++...+..+|.
T Consensus 85 ~~~~~~~~~~~~~--~---~--~~~~~~-l~~~r---~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~ig~ 152 (1146)
T PRK08633 85 LFEVGLTLLIVLA--Y---Y--LGWFWL-AFAVT---FLLGAQSAIYSPAKYGIIPELVG-KENLSRANGLLEAFTIVAI 152 (1146)
T ss_pred HHHHHHHHHHHHH--H---H--HccHHH-HHHHH---HHHHHHHHhhchHHHhhhHHhcC-cccchhhhhHHHHHHHHHH
Confidence 3222222211110 0 0 111222 22222 26778888888888899999987 6889999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc---CC----CcchHHHHHHHHhc
Q 011925 177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RG----NSHARISWAYWFKK 249 (475)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~---~~----~~~~~~~~~~l~~~ 249 (475)
++++.+++.+........ .+...+|++.+.+..+...+..++..+..+|.+...+. ++ .....+.++.++++
T Consensus 153 ~lg~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (1146)
T PRK08633 153 LAGTALFSFLFESVNGNT-PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSD 231 (1146)
T ss_pred HHHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcC
Confidence 999988887765411000 00011333333333222222222222334553322111 11 11234567778888
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccc-hhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHH
Q 011925 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS-AKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVL 326 (475)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~ 326 (475)
|.++...+...+..........++|.|+.+..|.+.. ..+++.....++.+++.++.+++ .+|. ++.+.++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l---~~r~~~~~~~~~~~~~ 308 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRL---SGRHIELGLVPLGALG 308 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---hCCceEccchhHHHHH
Confidence 8877766666666666667788899999998898887 77777777777777777776554 4544 4455566666
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 327 WVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
.+++.+.+.+.+ +.+..++..++.|++.+...+....+.++..+++.+| .++|+.++..++|..+++.+...+
T Consensus 309 ~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg--~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 309 LALSLFLLPTAP--SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELG--KVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred HHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchh--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 655555444433 5555566778888888888877788888888999999 888999999988887665554433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=216.99 Aligned_cols=317 Identities=11% Similarity=-0.024 Sum_probs=220.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHH--HHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHH
Q 011925 58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG--AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI 135 (475)
Q Consensus 58 ~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 135 (475)
....+++.+++.+...+.+|+.|+++||+||||++.. ...+.........+ . ..+.+. ++..+ ++
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~-------~--~~s~~~-l~~~~---~l 117 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGF-------H--LNSVPL-LFAAL---FL 117 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-------H--HhhHHH-HHHHH---HH
Confidence 3568889999999999999999999999999986422 22222222211111 0 012222 22222 26
Q ss_pred HHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHH
Q 011925 136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC 215 (475)
Q Consensus 136 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 215 (475)
.+++.++..+...++++++.+ +++|++++++.+.+..+|.++++.+++.+.. ..+|++.+...++.+++
T Consensus 118 ~gi~~a~~~p~~~a~l~~~~~-~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------~~~~~~~~~~~~~~~~~ 186 (1140)
T PRK06814 118 MGIHSALFGPIKYSILPDHLN-KDELLGANALVEAGTFIAILLGTIIGGLATI----------SGNFVILVALLMGIAVL 186 (1140)
T ss_pred HHHHHHhhchHHHHhhHhhcC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------ccccHHHHHHHHHHHHH
Confidence 788888888888999999997 7889999999999999999999999888864 34788877444444444
Q ss_pred HHHHHhhccccccccccc-CCC----cchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhh
Q 011925 216 FVGIFLSRTEEPRLKMGL-RGN----SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL 290 (475)
Q Consensus 216 ~~~~~~~~~~e~~~~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~ 290 (475)
..++ .+.+++++..++. +.+ .+..+.++.+.+||.++...+..++.++.......++|.|+.+.+|.++.+.++
T Consensus 187 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~ 265 (1140)
T PRK06814 187 GWLA-SLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATL 265 (1140)
T ss_pred HHHH-HhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH
Confidence 3333 3444543322111 111 123456788889999888877777777777778889999999988999888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhc------------------CCchHHHHHHHHH
Q 011925 291 VPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILIL------------------PMNMSAFMYVLAI 350 (475)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 350 (475)
+.....++.+++.++.+++ .++. ++.+..+.++..++.+.+.+. ...+.+.+.+..+
T Consensus 266 ~~~~~~~g~~ig~~~~g~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1140)
T PRK06814 266 FLAVFSVGVAVGSFLASKL---SEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLF 342 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHH
Confidence 8788788888888887654 3322 333333333333322222221 1134455566777
Q ss_pred HHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 351 l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.|++.+...+...++.+..++++.+| .++|+.++...++..+++.+.+.+.
T Consensus 343 ~~g~~~~~~~~~~~~~~~~~~p~~~~G--~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 343 GLAAAGGLYIVPLFAALQAWANPAHRA--RVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHhHHHHHHHHHhhCCcccce--eeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999988888888999999999999 8999999999999999998877764
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-20 Score=187.84 Aligned_cols=352 Identities=11% Similarity=0.009 Sum_probs=227.0
Q ss_pred ehccccchhHHHHHHHHHHHHHHHHHH---cCCChhHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHHHHHHH
Q 011925 27 LYYGSGHMLNDITAACWFTYLLLFLTD---IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAV 102 (475)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr-~Grr~~~l~~~~~~~~~ 102 (475)
+......+...+.++...+++|.|+++ .|+|..+.|++.+++.+...+..++.|+++|| +||||. ++.+.+..++
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~-l~~~~~~~~~ 91 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT-MVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH-HHHHHHHHHH
Confidence 344456777778888888999999986 59999999999999999999999999999999 899998 4555555656
Q ss_pred HHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCc--cchhhHhhHHHHHHHHHHHHHH
Q 011925 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLY 180 (475)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~--~~R~~~~~~~~~~~~~g~~~~~ 180 (475)
+..++.. .. +.....+.. .+.+++.+...+...+++++..+++ ++|++..++.+...++|..+++
T Consensus 92 g~~~~~~-------~~--~~~~~~~~~----~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~ 158 (475)
T TIGR00924 92 GHFMLAM-------SI--YPDLIFYGL----GTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP 158 (475)
T ss_pred HHHHHHh-------cc--cHhHHHHHH----HHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence 5543331 11 111111111 2566777777777788888888643 3578888899999999999988
Q ss_pred HHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcc---cccccccc-cC-CCcchHHH-------------
Q 011925 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT---EEPRLKMG-LR-GNSHARIS------------- 242 (475)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~e~~~~~~-~~-~~~~~~~~------------- 242 (475)
.+++.+.. ..+|++.|.+.++..++..+...... ++.+.+++ .+ ++++..+.
T Consensus 159 ~l~g~l~~----------~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (475)
T TIGR00924 159 LLAGVIAE----------NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFF 228 (475)
T ss_pred HHHHHHHH----------hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Confidence 88776642 35799988876654333322222211 11110000 00 00000000
Q ss_pred ----------------------------------HHHHHhch--hHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccc
Q 011925 243 ----------------------------------WAYWFKKI--LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 286 (475)
Q Consensus 243 ----------------------------------~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~ 286 (475)
..+.-|+| .+..+.+...+.+..+....+.++.|..++.+.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~ 308 (475)
T TIGR00924 229 CAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML 308 (475)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 00011111 222333444455566667777788887765444321
Q ss_pred ----hhhhHhHHHHHHHHHHHHHHHH-HHHHhhhh---HHH--HHHHHHHHHHHHHHHhhc-------CCchHHHHHHHH
Q 011925 287 ----AKALVPAIIYICSFIVSILLQE-MAWTGQRL---KAY--YSAGGVLWVFCGAGILIL-------PMNMSAFMYVLA 349 (475)
Q Consensus 287 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~---k~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 349 (475)
..+.+..+..+..++..++..+ +.++.||. +.. +.+|.++..+++....+. ...+.++.+...
T Consensus 309 ~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~ 388 (475)
T TIGR00924 309 GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIY 388 (475)
T ss_pred ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHH
Confidence 1345555555555555555443 34555531 222 366777776665554421 124677778889
Q ss_pred HHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 350 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 350 ~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
++.++|.....|...+...+..|++.+| .++|++.+...+|..+++.+.....
T Consensus 389 ~~~~~ge~~~~p~~~~~~~~~aP~~~~g--~~~g~~~l~~~~g~~l~~~~~~~~~ 441 (475)
T TIGR00924 389 LFQTLGELMISPLGLSWWTKIAPQRLMG--QMLGMWFLAQAMGSLLGGYLATFGA 441 (475)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 9999999999999999988776553
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-21 Score=190.53 Aligned_cols=326 Identities=11% Similarity=0.091 Sum_probs=231.8
Q ss_pred CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHH
Q 011925 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (475)
Q Consensus 55 g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 134 (475)
..|..+-|++++.......+++.+.|++.||+|-||++...+. +.++..++ .| .......+. ++..+ .
T Consensus 69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~-~sa~~t~l-----~P--~aa~~~~~~-~~~~R---~ 136 (466)
T KOG2532|consen 69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGL-ISALLTLL-----TP--LAASIGFYL-LLVLR---F 136 (466)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHH-HHHHHHHH-----HH--HHHHhcchh-hHHHH---H
Confidence 6788999999999999999999999999999999998655444 44444332 23 111222222 22223 3
Q ss_pred HHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHH
Q 011925 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC 214 (475)
Q Consensus 135 l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
+.|++.+...++...+...+.| ++||++..++...+..+|.++...+++.+.+ ...||+..|++.+.+++
T Consensus 137 lqGl~~g~~~pa~~~i~~~W~P-~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~---------s~~GW~sifY~~g~~g~ 206 (466)
T KOG2532|consen 137 LQGLGQGVLFPAIGSILAKWAP-PNERSTFIAILTAGSQLGTIITMPVSGLLCE---------SSLGWPSIFYVFGIVGL 206 (466)
T ss_pred HhHHHHhHHHhhhhceeeeECC-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc---------cCCCCchHHHHHHHHHH
Confidence 7889999998999999999997 8999999999999998888887666666653 23699999999999999
Q ss_pred HHHHHHhhcccccccccc-----c-------CC----CcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 011925 215 CFVGIFLSRTEEPRLKMG-----L-------RG----NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 278 (475)
Q Consensus 215 i~~~~~~~~~~e~~~~~~-----~-------~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 278 (475)
+..++++....|++.+.+ | +. +++...+++++++++++|...+..++.......+..|.|.|+.
T Consensus 207 i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~ 286 (466)
T KOG2532|consen 207 IWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK 286 (466)
T ss_pred HHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 998888776665433211 0 00 1112458999999999999999999999999999999999999
Q ss_pred hhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhh-----h-HHH-HHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 011925 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR-----L-KAY-YSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (475)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r-----~-k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (475)
+.+|++..+.+++..+..+...+..++.+.+ +++..| . ||. -.++....+++++.+.+.+.++.+...+ ..
T Consensus 287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~-~l 365 (466)
T KOG2532|consen 287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVI-LL 365 (466)
T ss_pred HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHH-HH
Confidence 9999999999998888888888888887776 443331 1 233 2455556666666666655434322222 12
Q ss_pred HHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 351 l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
..+.+.................+++.| +.+|+.++...+++.++|.+++.+-.
T Consensus 366 ~~~~~~~g~~~~Gf~~~~~~~apq~a~--~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 366 TIAIGLSGFNISGFYKNHQDIAPQHAG--FVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHHcccchhhhHhhhhhccchHHH--HHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 222222222222222222222567788 99999999999999999999988863
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-19 Score=175.85 Aligned_cols=342 Identities=14% Similarity=0.078 Sum_probs=196.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCcc
Q 011925 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (475)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~ 112 (475)
.|.....++...+|++.|+++.|+|+.++|.++++..+...+.+|++|.++||++++|..+....+..++......
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~---- 86 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA---- 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH----
Confidence 3445667778889999999999999999999999999999999999999999998766655544444444332222
Q ss_pred CCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 011925 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA-FIVFSVST 191 (475)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~ 191 (475)
. ..+.++.+.... +..+.+....+-..++.-+..+ ++|.+....| .++.+|.+++.... ..+.+..+
T Consensus 87 ---~--~~~f~~~~~~~~----l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iR-lwGSiGf~~~~~~~~~~~~~~~~ 154 (400)
T PF03825_consen 87 ---F--SSSFWWLFVIML----LFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIR-LWGSIGFIVAALAFGGLLGGYLG 154 (400)
T ss_pred ---H--hccHHHHHHHHH----HHHHHHccHHHHHHHHHHHHcc--cccCCCCcch-hhhhHHHHHHHHHHHHHHHhhhc
Confidence 0 112233222222 3344443333333344333332 2333444444 44456666554332 22222111
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--cCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhh
Q 011925 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG--LRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (475)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (475)
..+..+.+++.+...++.....+. .|+.+.+++ ++.+++..++..+++|||++....+..++........
T Consensus 155 -------~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~ 226 (400)
T PF03825_consen 155 -------ISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAY 226 (400)
T ss_pred -------cccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 112222333333333333333222 333221111 1112222334457999999888888778888888888
Q ss_pred hHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 011925 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYV 347 (475)
Q Consensus 270 ~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (475)
..|.+.|+++.-|.+....+....+..++-++.-... +|+.+|+ |+++.++.+..++=..++....+ +.+....
T Consensus 227 ~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~---~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-~~~~~~~ 302 (400)
T PF03825_consen 227 YTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFS---GRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-PWPFIVA 302 (400)
T ss_pred HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHH---HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHH
Confidence 9999999887644555544443333333343443343 4445555 78888888888877666665532 3222222
Q ss_pred H----HHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHH-HHHHHHHHHHHHHHhc
Q 011925 348 L----AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFL-DKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 348 ~----~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~ig~~ig~~l~~~~~ 404 (475)
. ..+.|+.++........+.++..|++.++ ...++++.. .-+|..+|+.+.|.+.
T Consensus 303 ~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~a--t~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 303 LQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRA--TAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchH--HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 34689999999999999999988888877 455554332 2345555554444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-19 Score=184.86 Aligned_cols=349 Identities=13% Similarity=0.022 Sum_probs=210.9
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHHHHHHHHHH
Q 011925 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFS 105 (475)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr-~Grr~~~l~~~~~~~~~~~~ 105 (475)
.-....+.....++.+..+++.|+++. |+|..+.+++.+.+........++.|+++|| +||||.++ .+.+...++..
T Consensus 25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~-~g~~~~~ig~~ 103 (500)
T PRK09584 25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM-LGAIVLAIGYA 103 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHH
Confidence 344456667777788888999999776 9999999999988887777777899999999 59999854 45555554443
Q ss_pred HhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCcc-chhhHhhHHHHHHHHHHHHHHHHHH
Q 011925 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIAF 184 (475)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~-~R~~~~~~~~~~~~~g~~~~~~~~~ 184 (475)
++.. ... .... ....+ .+.+++.+...+...+++.+..++++ +|.+..++.+.+.++|..+++.+++
T Consensus 104 l~~~-------~~~-~~~~-l~~~~---~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g 171 (500)
T PRK09584 104 LVAW-------SGH-DAGI-VYMGM---ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP 171 (500)
T ss_pred HHHH-------hcc-cHHH-HHHHH---HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 3321 111 1111 11111 14667777666667788888876443 3455677778888899988888877
Q ss_pred HHHHhhccCCccchHHHHHHHHHHHHHHHHH---HHHHHhhcccccccccccC--CCcchH-------------------
Q 011925 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCC---FVGIFLSRTEEPRLKMGLR--GNSHAR------------------- 240 (475)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~e~~~~~~~~--~~~~~~------------------- 240 (475)
.+.+ ..+||+.|.+.++..++ ..+......+|..++++.+ +..+..
T Consensus 172 ~l~~----------~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (500)
T PRK09584 172 WLAA----------KYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHN 241 (500)
T ss_pred HHHH----------hhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 7653 45899998876643332 2233333334421111101 000000
Q ss_pred ---------------------H--HHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHh----hhc-----ccccchh
Q 011925 241 ---------------------I--SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI----NDL-----RMGQSAK 288 (475)
Q Consensus 241 ---------------------~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----~~~-----g~~~~~~ 288 (475)
+ ..++.-| ++.+..+. .++....++......+.++. ++. |.. ...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~ 318 (500)
T PRK09584 242 QEIARMALGVVALGIVVIFGKEAFAMKGAAR-RKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEP 318 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECH
Confidence 0 0000111 11121111 11222233333344444432 211 111 112
Q ss_pred hhHhHHHHHHHHHHHHHHHH-HHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCC-------chHHHHHHHHHHHHHHHHH
Q 011925 289 ALVPAIIYICSFIVSILLQE-MAWTGQRL--KAYYSAGGVLWVFCGAGILILPM-------NMSAFMYVLAIFVGIANAL 358 (475)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~-~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~g~~~ 358 (475)
+.+..+..+..++..++..+ ++|+.+|. .+.+.+|..+.+++++.+..... -+.++.....++.++|...
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 34444555455555555444 46666664 45577788888887666544321 1245667778899999999
Q ss_pred HHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 359 MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
..|...++..+..|++.+| .++|++.+...+|+.+++.+.+...
T Consensus 399 ~~p~g~s~~~~~aP~~~rg--~~~g~~~l~~a~g~~~~g~~~~~~~ 442 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMG--FIMGSWFLTTAGAALIAGYVANLMA 442 (500)
T ss_pred HhHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 9999888888888888888877554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=192.40 Aligned_cols=319 Identities=14% Similarity=0.123 Sum_probs=198.0
Q ss_pred HHHHHHHHcCCC---hhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccch
Q 011925 46 YLLLFLTDIGLS---PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (475)
Q Consensus 46 ~l~~~~~~~g~s---~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 122 (475)
+.+...+|.+++ +.+.+++.+++.+...++.++.|+++||+||||.+++ +.+...++.++... .| +.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~-~~~~~~i~~~~~~~--~~-------~~ 180 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLL-STLVTAVSGVLTAF--SP-------NY 180 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHH-HHHHHHHHHHHHHH--cc-------cH
Confidence 344444555888 8999999999999999999999999999999988544 44444444333221 11 22
Q ss_pred hhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHH
Q 011925 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (475)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (475)
+. +...+ .+.+++.+...+...+++.|..+ +++|++..+....+..+|.++++.++..+ .+|
T Consensus 181 ~~-~~~~r---~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------------~~w 242 (505)
T TIGR00898 181 TV-FLVFR---LLVGMGIGGIWVQAVVLNTEFLP-KKQRAIVGTLIQVFFSLGLVLLPLVAYFI-------------PDW 242 (505)
T ss_pred HH-HHHHH---HHHHhhccchHHHHHHHhheecC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------------hHH
Confidence 22 22233 26778888878888889999986 78899988888777777777665544322 249
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccc---c----c-------------------------cCC--CcchHHHHHHHHh
Q 011925 203 RWIAYSSIFIGCCFVGIFLSRTEEPRLK---M----G-------------------------LRG--NSHARISWAYWFK 248 (475)
Q Consensus 203 ~~~~~~~~~~~~i~~~~~~~~~~e~~~~---~----~-------------------------~~~--~~~~~~~~~~l~~ 248 (475)
|+.+++.++..++..+.. +..||+++. + + +++ +.+.+..+++++|
T Consensus 243 r~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 321 (505)
T TIGR00898 243 RWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFR 321 (505)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhC
Confidence 999988877766665554 445664210 0 0 000 0000125677888
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHH
Q 011925 249 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 327 (475)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~ 327 (475)
+|.++...+...+.++..... .|...+..+..+.+.. .......+..+.+.++.+++ +|+++ |+.+.++..+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~gr--r~~~~~~~~~~ 395 (505)
T TIGR00898 322 TPNLRKTTLCLMMLWFTTAFS-YYGLVLDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGR--RYTMAASLLLA 395 (505)
T ss_pred ChHHHHHHHHHHHHHHHHHHH-HHHHhccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence 888776655444333322221 1222222233333322 12223344455566665554 44444 56666666666
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 328 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
.++.+.+.+.+....+......++.+++.+..++....+..+..|.+.++ ...|+.+....+|+.+++.+.+
T Consensus 396 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 396 GVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN--LGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh--hhHhHHHHHHHHHHHHHhHHHH
Confidence 66655555554333334344455666666666777777888888888888 7788888899999999998877
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-20 Score=188.01 Aligned_cols=366 Identities=12% Similarity=0.034 Sum_probs=209.5
Q ss_pred ceehccccchhHHHHHHHHHHHHHHHHHHc-----CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHH
Q 011925 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-----g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~ 99 (475)
....-+++.+..+......+..+|.+-.+. ..++.+.+++.+...+...++.++.|+++||+|||+.++ .+.+.
T Consensus 17 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~-~~~~~ 95 (502)
T TIGR00887 17 AIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG-MELII 95 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH-HHHHH
Confidence 344566677777777777776666654432 356778899999999999999999999999999999854 44444
Q ss_pred HHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHH
Q 011925 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
..++..+... .+. .......+.+...+ .+.+++.+...++...+..|.+| +++|++..++.+....+|.+++
T Consensus 96 ~~v~~~~~~~--~~~--~~~~~~~~~~~~~r---~l~G~~~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~g~~~g 167 (502)
T TIGR00887 96 MIIATVASGL--SPG--SSPKSVMATLCFWR---FWLGVGIGGDYPLSAIITSEFAT-KKWRGAMMAAVFAMQGFGILAG 167 (502)
T ss_pred HHHHHHHHHH--ccC--cccchHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHH
Confidence 4444332221 110 00000012223333 36788888888888899999987 8899999999999999998888
Q ss_pred HHHHHHHHHhhccC--Cc-----------cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----cccC-------
Q 011925 180 YAIAFIVFSVSTAK--TH-----------ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK-----MGLR------- 234 (475)
Q Consensus 180 ~~~~~~l~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~-----~~~~------- 234 (475)
+.+...+...+... .. ...+++||+.+.+.++.+++..+. .+.+||+++- ++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~ 246 (502)
T TIGR00887 168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASDMS 246 (502)
T ss_pred HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHH
Confidence 87776554322110 00 001347999997776666555444 3456775320 0000
Q ss_pred ---------CC----------cchHHHHHHHHhch---hHHHH----HHHHHHHHHHHHhhhHHHHHHHhhhcccccchh
Q 011925 235 ---------GN----------SHARISWAYWFKKI---LYYQV----ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK 288 (475)
Q Consensus 235 ---------~~----------~~~~~~~~~l~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~ 288 (475)
++ +..+.+++++++++ +.+.. ....++..+..+....|.|.++.+ .|++....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~ 325 (502)
T TIGR00887 247 AVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAA 325 (502)
T ss_pred HHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCcc
Confidence 00 00112466666532 21111 112233334455666778888854 57654321
Q ss_pred hh------------HhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-C-chHHHHHHHHHHHH
Q 011925 289 AL------------VPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-M-NMSAFMYVLAIFVG 353 (475)
Q Consensus 289 ~~------------~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~g 353 (475)
+. ...+..++.+++.++.+++ +|++| |+.+.++..+..++...+.+.. . .+........+...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gR--R~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 403 (502)
T TIGR00887 326 TNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGR--KPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQF 403 (502)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--hhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 10 1112223444455555554 55555 5566666655555443333211 1 11111111111111
Q ss_pred HHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 354 IANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 354 ~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
++.....+....+..+..|.+.+| ...|+.+....+++.+++.+.+.+.+
T Consensus 404 ~~~~~~~~~~~~~~~E~~p~~~R~--~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 404 FANFGPNATTFIVPGEVFPTRYRS--TAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred HHhcCCCchhhhhhhccCchhHHH--HHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 111112234445567788899898 88889899999999999988887653
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-20 Score=176.98 Aligned_cols=356 Identities=10% Similarity=0.077 Sum_probs=207.9
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~ 100 (475)
+.++.+.++.-.+...+.+++..+|.+.+++|. |+|++++|.++++..+...+.+|+.|.++||.|.||..+....++.
T Consensus 5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~ 84 (412)
T PF01306_consen 5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILL 84 (412)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHH
Confidence 344566677777788888999999999999996 9999999999999999999999999999999998887444333222
Q ss_pred H-HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHH
Q 011925 101 A-VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 101 ~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
. .+-...+. ..|. . ..+. + +...+.....+..+....+...++..+.++ ++.-.. |-...++.+|.+++
T Consensus 85 ~l~~pff~~v-~~pl-l--~~n~-~--lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feY-G~~R~wGSig~ai~ 154 (412)
T PF01306_consen 85 LLFGPFFIYV-FGPL-L--QSNF-W--LGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEY-GRARMWGSIGFAIA 154 (412)
T ss_dssp HTCHHHHHHT-HHHH-H--HTT--H--HHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHH-H--HHHH-H--HHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCc-chHHHHhhHHHHHH
Confidence 1 12111111 0120 0 0011 0 001000001121222222222333322221 111112 32335566788888
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---ccC---CCcchHHHHHHHHhchhHH
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GLR---GNSHARISWAYWFKKILYY 253 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~---~~~---~~~~~~~~~~~l~~~~~~~ 253 (475)
..+++.+++. +-...+++....+++..++.+...+|++++. +.+ +++...+...+++|+|++|
T Consensus 155 s~~~G~L~~i-----------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw 223 (412)
T PF01306_consen 155 SLLAGILFNI-----------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFW 223 (412)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHH
T ss_pred HHHhheeeee-----------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHH
Confidence 8888887653 2234455444444444444444433322211 111 1111234567899999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhc---ccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHH
Q 011925 254 QVALVYMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 329 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~ 329 (475)
.+.+........+......++.|..... +.+....|.+..+..+..++...+++++ +|.+- |+.++++..++.+
T Consensus 224 ~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~--k~~Lllag~i~~i 301 (412)
T PF01306_consen 224 FFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGA--KNLLLLAGVIMAI 301 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcCh--HhHHHHHHHHHHH
Confidence 8887777776677777777888876533 3333444555555444455555555543 44444 7888888888877
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH-HHHHHHHHHHHHHHHHHHhc
Q 011925 330 CGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~ig~~ig~~l~~~~~ 404 (475)
=.....+.+ +++.+...-.+.++-.+.......-+.....|+|..+ +.+.+ .++...+|..+.+.+.|...
T Consensus 302 Ri~~~~~~~--~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsA--t~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 302 RIIGSGFAT--NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSA--TLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp HHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHH--HHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 766655543 6677777888999999998888889999999988877 66666 35666777777776666654
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-19 Score=169.02 Aligned_cols=336 Identities=12% Similarity=0.100 Sum_probs=237.4
Q ss_pred HHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccC-----CcchhHHHHHHHHHHHHHHhcCCccCCccCC-----ccc
Q 011925 52 TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG-----HFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-----TST 121 (475)
Q Consensus 52 ~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~G-----rr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~ 121 (475)
.|+++++..++.+++...+.. ...|.+|+.||+++ ||.||++.|......+...+-.. .. .+.. ...
T Consensus 8 vEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a-~~-~l~~~~~~~~~~ 84 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFA-LL-LLAESGQQSSGP 84 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHH-HH-HHcccccccccc
Confidence 345999999999999887764 67999999999998 99999999988776653322110 00 0111 111
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHH
Q 011925 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (475)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (475)
.+.......+.+.++|+|......++.++..|.++ ||+|+++.++.+.+-.+|.+++..+.+.++.-+ +...
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~-e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~-------s~~r 156 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAP-EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF-------SPER 156 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc-------CHHH
Confidence 22222222233347899999999999999999997 899999999999999899888877776665321 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccc----ccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011925 202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM----GLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV 277 (475)
Q Consensus 202 ~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 277 (475)
-...+...+++.+...++..+. .|++.++ +++++.+.++.++++.++|+...+...-++....++.-...+-+|-
T Consensus 157 L~~v~~~~a~i~~~l~~ia~wg-~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPyg 235 (403)
T PF03209_consen 157 LIQVIQGVALIALLLNLIALWG-QEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYG 235 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCch
Confidence 2222323333333333333232 3433321 2345567788999999999888877777777777777788888999
Q ss_pred hhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHH
Q 011925 278 INDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAFMYVLAIFVGIA 355 (475)
Q Consensus 278 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~g 355 (475)
-+.+|++..+++.+......+.+++..+.+++ .+..++ ++.-.+|+...++++..+.+.. ..+.+.+....++.|++
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~-~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g 314 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGK-KRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG 314 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 99999999988888888888888888887764 322222 5666778887777765554432 34567777888999999
Q ss_pred HHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 356 NALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
.|.+.....+...+.+++++.| ++.|.++..+.++.++|..+-+.
T Consensus 315 ~G~f~vgals~mM~lt~~~~aG--~~mG~WGaaQA~A~Glg~~~GG~ 359 (403)
T PF03209_consen 315 NGLFTVGALSLMMDLTSAGRAG--LFMGAWGAAQAIARGLGTFLGGA 359 (403)
T ss_pred hhHHHHHHHHHHHhCCCCcchh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888888889999 99999999998888877665443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-20 Score=173.23 Aligned_cols=334 Identities=12% Similarity=0.061 Sum_probs=212.5
Q ss_pred HHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchh
Q 011925 45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123 (475)
Q Consensus 45 ~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 123 (475)
+.+..++++. |+|+.|.+++..+..+..++...+.|.+.||+|.||.+.+...++..-.....+. ....+.
T Consensus 34 s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a-------~~~~~~- 105 (417)
T COG2223 34 SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFA-------VTYPST- 105 (417)
T ss_pred HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHH-------ccCCch-
Confidence 3444444454 9999999999999999999999999999999999998665554444333333331 111122
Q ss_pred hhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHH
Q 011925 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203 (475)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (475)
+.++...+ +.|++-+- .....+.++...| +++++.+.++.. ..++|..+...+++++....+ ...|+
T Consensus 106 ~~ll~~gl---l~G~~Gas-Fav~m~~~s~~fP-~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g-------~~~w~ 172 (417)
T COG2223 106 WQLLVIGL---LLGLAGAS-FAVGMPNASFFFP-KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG-------FLAWR 172 (417)
T ss_pred HHHHHHHH---HHhcccce-ehcccccccccCC-hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-------hHHHH
Confidence 22232221 34433221 2233455777776 778899999988 888999998888887775431 01388
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccCCCcchH-HHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcc
Q 011925 204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 282 (475)
Q Consensus 204 ~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g 282 (475)
....+..+..++..+..++..+|.++.++ ..++.+ .+++.++|||+.|.+.+.|+...-.+-.+..++|.|++++.+
T Consensus 173 ~~~~i~~~~l~v~~v~~~~~~~d~p~~r~--~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg 250 (417)
T COG2223 173 NVAGIYVVALAIAAVLAWLGMNDVPEHRA--SVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFG 250 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhc--cccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87777666666666666666666433211 111222 678889999999999999999988888999999999999999
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCC-----chHHHHHHHHHHHHHH
Q 011925 283 MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPM-----NMSAFMYVLAIFVGIA 355 (475)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~g 355 (475)
.++..++.........+.+..++.| ++.||+ +|...+....++++.....+.+. .+....+...+..++.
T Consensus 251 ~~~~~Ag~~a~~f~~~g~l~Rp~GG---~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~ 327 (417)
T COG2223 251 LSPVTAGLIAFLFPLIGALARPLGG---WLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVF 327 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHhccc---hhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHH
Confidence 9988776554443333444444444 456666 66666666666666555444321 2233333333333344
Q ss_pred HHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccC
Q 011925 356 NALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS 407 (475)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~ 407 (475)
.|.-...+..++....++ +.| .+.|+.+....+|+..-|...+......
T Consensus 328 ~G~GnGsvfk~Ip~if~~-~~G--~v~G~vga~G~lGGf~lp~~~g~~~~~t 376 (417)
T COG2223 328 AGLGNGSVFKMIPVIFPK-ETG--AVTGIVGAIGGLGGFFLPLAFGVSLDLT 376 (417)
T ss_pred hccCcchheeechHHHHh-hhh--HHHHHHHHhccccccchhHHHHHHHHhc
Confidence 443333444455544443 555 6777777777777666666666655333
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-24 Score=184.62 Aligned_cols=335 Identities=47% Similarity=0.879 Sum_probs=239.6
Q ss_pred CCCCCCccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhh---------ccC
Q 011925 17 FTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID---------RFG 87 (475)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~D---------r~G 87 (475)
..|+..++.++.||.|++.+++...++.+|+..|+++.|+++.....++.++.+.|++..|+.|..+| |+|
T Consensus 10 stkPigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G 89 (412)
T KOG4830|consen 10 STKPIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIG 89 (412)
T ss_pred CCCcccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhc
Confidence 35778999999999999999999999999999999999999999999999999999999999997665 799
Q ss_pred CcchhHHHHHHHHHHHHHHhcC--CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHh
Q 011925 88 HFKIWHGAGSVLVAVSFSSVFG--GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLT 165 (475)
Q Consensus 88 rr~~~l~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~ 165 (475)
||+.|-..+.++..+++-..|- .+..|. ...+.+.-...|......+|++++.
T Consensus 90 ~~~~wh~~gt~lVslSf~~ifg~a~iF~~~--~~~s~vanlglyaialvVFgv~~A~----------------------- 144 (412)
T KOG4830|consen 90 RRMSWHLIGTVLVSLSFPMIFGFAKIFLCK--STTSEVANLGLYAIALVVFGVGWAS----------------------- 144 (412)
T ss_pred ceeeeeecccEEEEEechhhcCceeEEeec--cHHHHHHHhHHHHHHhheeeeeeec-----------------------
Confidence 9999988887766665433331 000000 0000000000111000011111100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHH
Q 011925 166 SCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAY 245 (475)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 245 (475)
...+...-+|+..+....+++....+.+.++|||+..-..++.+..+..|..
T Consensus 145 ----------------------------~ke~tea~~R~~~~~~v~lG~~~~~vF~~~TrEP~~~~~~~~s~~~Rm~W~~ 196 (412)
T KOG4830|consen 145 ----------------------------VKESTEALIRLAGWLVVVLGITVAFVFYAFTREPTNSFSSDASELVRMHWTS 196 (412)
T ss_pred ----------------------------ccccHHHHHHHhhhheeeeceeEEEEEeecccCcccccCcchhhhhcccchh
Confidence 0011233456665555455544444455678887654333444456778889
Q ss_pred HHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011925 246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGV 325 (475)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~ 325 (475)
.+++-.++.+.+.+.+.....+....|++.|+.+++.+++...++++.+.++.++..+.+..-..+-++|.|.....|..
T Consensus 197 WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgi 276 (412)
T KOG4830|consen 197 WFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGI 276 (412)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeecccH
Confidence 99999999999999999999999999999999999999888788889988888887776654433445554555666777
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 326 LWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.+.+...+.+.+.+-...++...++.|+.++.......++.+.+.+++.++.++++|..++..|+..+++-.++..-.
T Consensus 277 iwifcga~ilLlpr~i~symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA~~lie~~~ 355 (412)
T KOG4830|consen 277 IWIFCGAVILLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIAYQLIELWT 355 (412)
T ss_pred HHHHhhhheeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHHHHHHHhcC
Confidence 7777766666666443334566677899999999888888888888888888889999999999999999988776654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-18 Score=158.66 Aligned_cols=349 Identities=13% Similarity=0.045 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCC
Q 011925 35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (475)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~ 114 (475)
.+++........+|.+.+-+++|..+++++...+...+.+...+.|++.||+|+|+- ++.+..+++++..+.+ |.
T Consensus 24 l~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g-i~lgL~l~avg~~lF~----pA 98 (422)
T COG0738 24 LWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG-IVLGLLLYAVGAALFW----PA 98 (422)
T ss_pred HHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH-HHHHHHHHHHHHHHHh----hh
Confidence 334444445555566555559999999999999999999999999999999999998 6778888888876554 31
Q ss_pred ccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 011925 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 194 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 194 (475)
+....+..++. ..++.+.|.+..++..++++..+.+ +++..+-....+....+|.++++.++..++..-...+
T Consensus 99 ---a~~~~y~~FL~---~lFila~Gi~~LetaaNp~v~~lg~-~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~ 171 (422)
T COG0738 99 ---ASSKSYGFFLV---ALFILASGIGLLETAANPYVTLLGK-PESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT 171 (422)
T ss_pred ---hhhhhHHHHHH---HHHHHHhhhHHHHhccchHHHHhCC-chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence 12222222222 1125778888899999999999887 4444555667778888999999988877765200000
Q ss_pred c-cc--------hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHH-HHHHHHhchhHHHHHHHHHHHHH
Q 011925 195 H-AD--------LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARI-SWAYWFKKILYYQVALVYMLTRL 264 (475)
Q Consensus 195 ~-~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 264 (475)
. .. ....+++++...+...+++.+.. ...|.|+.++.++++.+.++ ...+++|||+++...+..++.-.
T Consensus 172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~-~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG 250 (422)
T COG0738 172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLI-LLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVG 250 (422)
T ss_pred cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHh
Confidence 0 00 11236667766655444444333 22232222211111111111 56788999998888888888877
Q ss_pred HHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHH
Q 011925 265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSA 343 (475)
Q Consensus 265 ~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (475)
+.....+|++.|+.+..|.++.+.+.+......+.++|.++.-+ ++|+.+ .|.+........+-+....+.+ +.+
T Consensus 251 ~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~--~k~Laf~a~~~ill~~~~~l~~--g~v 326 (422)
T COG0738 251 AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP--EKYLAFYALIAILLLLAVALIG--GVV 326 (422)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHhc--ChH
Confidence 78889999999999988888888777777766777777765433 343333 4544444433333223333333 332
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 344 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
-+...++.|+.+++.+|...+...+..+++.+. ..+ .-...-+|+++-|.+.+.+.+
T Consensus 327 -~~~~l~~ig~F~simfPTIfslal~~l~~~ts~---~s~-~l~maivGGAiiP~l~G~i~d 383 (422)
T COG0738 327 -ALYALFLIGLFNSIMFPTIFSLALKNLGEHTSV---GSG-LLVMAIVGGAIIPPLQGVIAD 383 (422)
T ss_pred -HHHHHHHHHHHhHHHHHHHHHHHHhccCccccc---cce-eeeeheecchHHHHHHHHHHH
Confidence 345567889999999998888877766643333 122 223345788888888888764
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-18 Score=170.82 Aligned_cols=337 Identities=11% Similarity=0.037 Sum_probs=207.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccC----CcchhHHHHHHHHH-HHHHH
Q 011925 33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG----HFKIWHGAGSVLVA-VSFSS 106 (475)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~G----rr~~~l~~~~~~~~-~~~~~ 106 (475)
-+..++. ++....+++++++. |+|+++++...+...+...+ .|++|.++||++ |||.|++.+.++.. ... .
T Consensus 35 y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~-~ 111 (468)
T TIGR00788 35 LFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILY-G 111 (468)
T ss_pred HHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH-H
Confidence 3455666 67777778888875 99999999999999888877 777999999974 46667777665553 222 1
Q ss_pred hcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccch--hhHhhHHHHHHHHHHHHHHHHHH
Q 011925 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR--VVLTSCRNAFTMVANLSLYAIAF 184 (475)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R--~~~~~~~~~~~~~g~~~~~~~~~ 184 (475)
.. + ..+ +...... ....+.+++.+..+++..++..|..+ ++++ +...+..+....+|.++++.+++
T Consensus 112 ~l----~--~~~--~~~~~~~---~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G 179 (468)
T TIGR00788 112 LL----P--GKV--SSAKVAA---AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG 179 (468)
T ss_pred hc----c--ccc--chHHHHH---HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 11 1 111 1111111 11225778888889999999999886 2222 22333444444578888887777
Q ss_pred HHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccc-c-cccCCC---------c----ch---HHHHHHH
Q 011925 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL-K-MGLRGN---------S----HA---RISWAYW 246 (475)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~-~-~~~~~~---------~----~~---~~~~~~l 246 (475)
.+.+ ..+|+..+++.+.+.++.. +.....+|++. . ++.+++ . +. ....++.
T Consensus 180 ~l~~----------~~~~~~~f~~~a~l~ll~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (468)
T TIGR00788 180 PLLD----------KTLTRILFLITAALLLLQL-FVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGA 248 (468)
T ss_pred HHHH----------hcCcchHHHHHHHHHHHHH-HHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7653 3478988888777666553 33355677531 1 111110 0 01 2234556
Q ss_pred HhchhHHHHHHHHHH-HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHH
Q 011925 247 FKKILYYQVALVYML-TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAG 323 (475)
Q Consensus 247 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~ 323 (475)
+|+|..+...+..++ ....... ......+..+.+|+++.+.+.+.....++.+++..+.++. .+|+ |+.+.++
T Consensus 249 l~~~~i~~~l~fifl~~~~~~~~-~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~---~~~~~~r~~l~~~ 324 (468)
T TIGR00788 249 IQLLEIAKPLIFIFLSYANLPGA-SGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRF---LKTFPYRLLFGVT 324 (468)
T ss_pred HhcHHHHHHHHHHHHHHhhcCCC-CceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH---HhhCCHHHHHHHH
Confidence 777877665444444 2222111 1111113345689999988887777777777777765543 3444 6777777
Q ss_pred HHHHHHHHHHHhhcC--------CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHH
Q 011925 324 GVLWVFCGAGILILP--------MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGI 395 (475)
Q Consensus 324 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~i 395 (475)
.++.+++........ ..+.+.+....++.+++.+..+.....+..+..|++.+| +.+++.+..+++|..+
T Consensus 325 ~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~eg--t~~al~~s~~~lg~~v 402 (468)
T TIGR00788 325 TLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCES--SVFALLASILHLGSSV 402 (468)
T ss_pred HHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCcee--hHHHHHHHHHHHHHHH
Confidence 777666553322110 012334445567888888888877788888899999999 7777777777777777
Q ss_pred HHHHHH
Q 011925 396 AVYVLQ 401 (475)
Q Consensus 396 g~~l~~ 401 (475)
++.+.+
T Consensus 403 ~~~~gg 408 (468)
T TIGR00788 403 SGFLGV 408 (468)
T ss_pred HHHHHH
Confidence 765433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-18 Score=172.20 Aligned_cols=334 Identities=14% Similarity=0.066 Sum_probs=236.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhh
Q 011925 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (475)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 124 (475)
.+.+...++++-+..+++|+.++..-...+..|+.+.+.||+|.|++ .+.|.++..+++++... ..+.+.
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v-~i~G~~v~~~g~~lssF---------~~~i~~ 136 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTV-MIAGGLVAALGLLLSSF---------ATSLWQ 136 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHH-HHHHHHHHHHHHHHHHH---------HhhHHH
Confidence 34555555668888899999999999999999999999999999887 56666666666654331 123444
Q ss_pred hhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHH
Q 011925 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW 204 (475)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (475)
..+.+. .+.|+|.++...|....++.+. +++|+.++++...+..+|..+.+.+...++ ...|||.
T Consensus 137 l~lt~g---vi~G~G~~~~~~paiviv~~YF--~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~----------~~~G~r~ 201 (509)
T KOG2504|consen 137 LYLTFG---VIGGLGLGLIYLPAVVILGTYF--EKKRALATGIAVSGTGVGTVVFPPLLKYLL----------SKYGWRG 201 (509)
T ss_pred HHHHHH---HHhhccchhhhcchhhhhhhHh--HHHHHHHHhhhhccCCcceeeHHHHHHHHH----------HHhCcHH
Confidence 444444 3788999999888888888665 578999999999999888877666555554 3679999
Q ss_pred HHHHHHHHHHHHHHHHhhccc--------------------cc-------ccccc---cCC------------C---c--
Q 011925 205 IAYSSIFIGCCFVGIFLSRTE--------------------EP-------RLKMG---LRG------------N---S-- 237 (475)
Q Consensus 205 ~~~~~~~~~~i~~~~~~~~~~--------------------e~-------~~~~~---~~~------------~---~-- 237 (475)
..++.+.+.+-+........| |. +..++ ..+ + .
T Consensus 202 ~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (509)
T KOG2504|consen 202 ALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNS 281 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccccc
Confidence 988887766555554444444 00 00000 000 0 0
Q ss_pred chHHHH----HHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 011925 238 HARISW----AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTG 313 (475)
Q Consensus 238 ~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (475)
..+... ++++|+|.|+.+.+...+..+++.....++|.|.. ..++++.+.+.+....++...++.++.|++.+..
T Consensus 282 ~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~ 360 (509)
T KOG2504|consen 282 PLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP 360 (509)
T ss_pred chhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc
Confidence 111122 57899999998888888888899999999999998 5689988888888888889999999888764333
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHH
Q 011925 314 QRL-KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMS 392 (475)
Q Consensus 314 ~r~-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig 392 (475)
... +....++.+...++.....+. ++.+.+....++.|++.|...+.......+..+.++-. ..+|+..+.+.++
T Consensus 361 ~~~~~~~~~~~ll~~gl~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~--~a~Gl~l~~~gi~ 436 (509)
T KOG2504|consen 361 GIRALVLFLLTLLIAGLARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLS--NAYGLLLLFQGIG 436 (509)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcc--hHHHHHHHHhHHH
Confidence 211 334455555555554433332 35666677788999999988876665666665555555 5889999999999
Q ss_pred HHHHHHHHHHhcccCC
Q 011925 393 CGIAVYVLQSYQSMSP 408 (475)
Q Consensus 393 ~~ig~~l~~~~~~~~~ 408 (475)
..+|+.+.+.+.+..+
T Consensus 437 ~l~gpPiag~~~d~tg 452 (509)
T KOG2504|consen 437 ALVGPPIAGLLYDITG 452 (509)
T ss_pred HHcCcccceeeeeccC
Confidence 9999998886654444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-16 Score=159.49 Aligned_cols=347 Identities=13% Similarity=0.057 Sum_probs=208.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhcc-CCcchhHHHHHHHHHHHHHHhcC
Q 011925 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSVLVAVSFSSVFG 109 (475)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~-Grr~~~l~~~~~~~~~~~~~~~~ 109 (475)
..+...+.++....++|.|+++. |+++.+.+.+.+.+.....+..++.|+++||+ ||||.. +.+.++..++..++..
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i-liG~il~~lg~lll~~ 95 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV-MLGALLMAIGHVVLGA 95 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH-HHHHHHHHHHHHHHHH
Confidence 34555667777888999999886 99999999999999999999999999999998 999984 5555555555433221
Q ss_pred CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCc-cchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011925 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS-TSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (475)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~-~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (475)
+ .. .......... +..+|.+.......++++|..+++ ++|.+..++.+.+.++|+.+++.+.+.+.+
T Consensus 96 ---~----~~-~~~~~~l~l~----li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 96 ---S----EI-HPSFLYLSLA----IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred ---h----hc-chhHHHHHHH----HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 00 0111111111 233455555555677888988754 368888899999888999888888777642
Q ss_pred hhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcc---cccc--cccccCCCcch----------------------HH
Q 011925 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT---EEPR--LKMGLRGNSHA----------------------RI 241 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~e~~--~~~~~~~~~~~----------------------~~ 241 (475)
..+|++.|.+.++..++..+..+... ++.. ++++.++++.. .+
T Consensus 164 ----------~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
T PRK15462 164 ----------EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWK 233 (493)
T ss_pred ----------hhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899988775442222222222111 1110 01111111000 00
Q ss_pred HH----------------HHHHh------ch-hHHH---HHHHHHHHHHHHHhhhHHHHHHHhhhc-----ccccchhhh
Q 011925 242 SW----------------AYWFK------KI-LYYQ---VALVYMLTRLVVNVSQAYLAFYVINDL-----RMGQSAKAL 290 (475)
Q Consensus 242 ~~----------------~~l~~------~~-~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~-----g~~~~~~~~ 290 (475)
.+ ..+.+ +| +.+. +.+...+.+..+....+-+..|..++. |++- -.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~ 312 (493)
T PRK15462 234 EWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-PTAM 312 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-CHHH
Confidence 00 00000 11 2222 222233333444444444555554433 2211 1234
Q ss_pred HhHHHHHHHHHHHHHHHH-HHHHhhhhH-----HHHHHHHHHHHHHHHHHhhc----C---CchHHHHHHHHHHHHHHHH
Q 011925 291 VPAIIYICSFIVSILLQE-MAWTGQRLK-----AYYSAGGVLWVFCGAGILIL----P---MNMSAFMYVLAIFVGIANA 357 (475)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~-~~~~~~r~k-----~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~l~g~g~~ 357 (475)
+..+..+..++.+++..+ +.|+.+|.| +-+.+|+.+..++++.+.+. . ..+.++++...++.++|.-
T Consensus 313 ~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl 392 (493)
T PRK15462 313 FQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL 392 (493)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 455555555555655544 566643211 23667777777776655331 1 1256667778889999999
Q ss_pred HHHHhHhhhhhhhccCCCccchhhhhHHHHHH-HHHHHHHHHHHHHhc
Q 011925 358 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLD-KMSCGIAVYVLQSYQ 404 (475)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~ig~~ig~~l~~~~~ 404 (475)
+..|...++..+..|+|.+| ..+|++.+.. .+|+.+++.+.+...
T Consensus 393 ~~sPvgls~~~~laP~~~~g--~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 393 FIDPVAMSQITRIEIPGVTG--VLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHChHHHHHHHHhChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999 9999986644 688888877777664
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=167.97 Aligned_cols=330 Identities=14% Similarity=0.105 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccch
Q 011925 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (475)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 122 (475)
..+.++...+|+|-+ ....|+.....+..++..|+.|+++|.||||.. ++.+.++..++.+..-. .+.
T Consensus 63 ~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-~i~g~~l~vvG~Iv~at----------A~~ 130 (599)
T PF06609_consen 63 PASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-FIIGSLLGVVGSIVCAT----------AQN 130 (599)
T ss_pred cHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH-HHHHHHHHHhHHHHhhc----------CCc
Confidence 345567777778554 567778888999999999999999999999886 56666666666553321 111
Q ss_pred hhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHH
Q 011925 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (475)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (475)
...++.- ..+.++|.+..... ...++|+.+ .|.|.....+... ..+.....++.+.+.+. ...+|
T Consensus 131 ~~~~iag---~~l~GvgaG~~~~~-~~~isEl~p-~k~R~~~~~~~~~----~~i~~~~~~~~ia~~~~------~~~~W 195 (599)
T PF06609_consen 131 MNTFIAG---MVLYGVGAGVQELA-ALAISELVP-NKWRGLGLAIASI----PFIITTWISPLIAQLFA------AHSGW 195 (599)
T ss_pred HHHHHHH---HHHHHHhhHHHHHH-HHHHHHhcc-cchhhhHhHHHHH----HHHhhhcccHHHHHHhc------cCCCc
Confidence 1111111 12567776655543 344788887 4566543332222 22222212222222221 23589
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--cccccccccC----CC----------------------------------------
Q 011925 203 RWIAYSSIFIGCCFVGIFLSRT--EEPRLKMGLR----GN---------------------------------------- 236 (475)
Q Consensus 203 ~~~~~~~~~~~~i~~~~~~~~~--~e~~~~~~~~----~~---------------------------------------- 236 (475)
||.+++.++...+..++.+++. |++++.+.++ ++
T Consensus 196 Rw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa 275 (599)
T PF06609_consen 196 RWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIA 275 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchh
Confidence 9999887776555444433222 2211100000 00
Q ss_pred ---------------c---chHHHH--HHHHhc-hhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccc---hhhhHh
Q 011925 237 ---------------S---HARISW--AYWFKK-ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVP 292 (475)
Q Consensus 237 ---------------~---~~~~~~--~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~---~~~~~~ 292 (475)
+ ..++++ .+++|| |.+...++..++....++....++|.......+-++. ..++..
T Consensus 276 ~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s 355 (599)
T PF06609_consen 276 PLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWIS 355 (599)
T ss_pred hHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhh
Confidence 0 001111 357777 4455555566666666677778888887765544432 344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q 011925 293 AIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVG 372 (475)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~ 372 (475)
.....+...++++.+.+-+..||.|..++++.+++.++..++.....++....+...++.|++.|..........+...|
T Consensus 356 ~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p 435 (599)
T PF06609_consen 356 SPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVP 435 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeC
Confidence 55566677777766665444456577777777776665444544443444444566778888888877777777777788
Q ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 373 EDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 373 ~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
+++-| ++.++....+.+|+++|..+..
T Consensus 436 ~~~ig--~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 436 DEDIG--TATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred chHHH--HHHHHHHHHHHHhhHHHHHHHH
Confidence 88888 8999999999999999977653
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=161.62 Aligned_cols=321 Identities=12% Similarity=0.047 Sum_probs=210.9
Q ss_pred CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHH-HhcCCccCCccCCccchhhhhHHHHHHH
Q 011925 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS-SVFGGCMPCRILSTSTLKVETISYCVFA 133 (475)
Q Consensus 55 g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 133 (475)
+-+.+++|+++....+.+.+.+|+.|.+.||+|+|-|+ +.|...+..+.+ +.+. .++...++..
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm-~~Gl~vmf~sTilFafg----------~sy~~l~vAR---- 166 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPM-VAGLFVMFLSTILFAFG----------NSYPMLFVAR---- 166 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHH-HHHHHHHHHHHHHHHHc----------chhHHHHHHH----
Confidence 56778999999999999999999999999999999995 455555555543 3331 2233222222
Q ss_pred HHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHH
Q 011925 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG 213 (475)
Q Consensus 134 ~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (475)
.+.++|.++.+++-.+++++..++++||++++|....+..+|.++++..++.+-+. .|++.+|++.+.+.
T Consensus 167 ~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~----------~Gk~aPFlVL~~v~ 236 (464)
T KOG3764|consen 167 SLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF----------AGKSAPFLVLAIVL 236 (464)
T ss_pred HHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh----------cCCcCcHHHHHHHH
Confidence 38899999999999999999999999999999999999999999988888777643 47788898888888
Q ss_pred HHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhH
Q 011925 214 CCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPA 293 (475)
Q Consensus 214 ~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~ 293 (475)
++-..+.++..+.++.+++ +.....++++++++|..+.....-..++.........++.+..+....+..+.+....
T Consensus 237 Lld~~L~l~vi~p~~~~~~---~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fL 313 (464)
T KOG3764|consen 237 LLDGALQLLVIEPTEMDPD---STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFL 313 (464)
T ss_pred HHHHHHHHheeCccccCcc---ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeec
Confidence 8777776555544332221 1122345678899998666655555555666677788899998888855556676666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh--HHHHHH--HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 011925 294 IIYICSFIVSILLQEMAWTGQRL--KAYYSA--GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNV 369 (475)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~ 369 (475)
...+..+++..+.+.+ .+|+ .+.+.. ++....+......+. ++....++.....+++.+...+........
T Consensus 314 p~~~~y~ig~~lfg~l---a~k~~~~~wl~~~~gl~~~G~~~~~iP~~--~~~~~L~vp~~~l~~~i~~~dasl~P~l~~ 388 (464)
T KOG3764|consen 314 PASLSYAIGTNLFGKL---ADKYPHLRWLLSLGGLATVGVSSGPIPFA--TSIAQLWVPNFGLGFGIGLADASLIPTLGY 388 (464)
T ss_pred ccccchhccCchHHHH---HHhcCchhHHHHHHHHHHHHHHhchhHhh--hhHHHHhhhhHHHHHHHHHHHHHHhhhhHH
Confidence 6667777787776655 4443 233222 222222222222222 233333333334444444433333333333
Q ss_pred hccCCCcc----chhhhhHHHHHHHHHHHHHHHHHHHhcccCC
Q 011925 370 LVGEDLSG----CAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP 408 (475)
Q Consensus 370 ~~~~~~~G----~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~ 408 (475)
..+.|+.. -|.++++......+|.++||.+.+.+...-+
T Consensus 389 lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG 431 (464)
T KOG3764|consen 389 LVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG 431 (464)
T ss_pred hcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh
Confidence 33333322 2388888888888888888887777664433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-16 Score=146.46 Aligned_cols=332 Identities=13% Similarity=0.116 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCc
Q 011925 40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (475)
Q Consensus 40 ~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 119 (475)
.+.+.+.++..-.|.|+|.+.+|++.++-.+..++..|+..++..|+|.+|. +..+.++..++..+=- .
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~-l~~~Llli~~G~~iR~-------~--- 96 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERS-LFLALLLIAAGILIRS-------L--- 96 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHh-------c---
Confidence 3445566666666779999999999999999999999999999999999887 4444444444432111 0
Q ss_pred cchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchH
Q 011925 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
......+.. ..+.+.|.+..|+-..+++-+-. |++-+..++.....-.+|..+++.+..|+.+. .
T Consensus 97 ~~~~~L~~g----t~l~G~gIav~nVLLPslIK~~F--pk~~~~mtglYs~sl~~~aaLaa~lavpla~~---------~ 161 (395)
T COG2807 97 GGLPLLFLG----TLLAGAGIAVINVLLPSLIKRDF--PKRVGLMTGLYSTSLGAGAALAAALAVPLAQH---------S 161 (395)
T ss_pred ccHHHHHHH----HHHHHhhHHHHHHhhhHHHHhhc--ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHh---------h
Confidence 011111111 12456666666666666666544 45667888888888888889999888888753 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-ccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 011925 200 NQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 278 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 278 (475)
.+||....+-+.++++..++++.. .+|+ ....+.+ ..+-..++|||.-|.+.+.+-+....++....|+|.++.
T Consensus 162 ~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~~---~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili 236 (395)
T COG2807 162 GGWRGALGFWALLALLALLIWLPQALREQ--AASIATK---LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILI 236 (395)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhccccc--ccccccc---cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 379998877778888777776543 2221 1111111 112235789998898888888899999999999999998
Q ss_pred hhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 011925 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 357 (475)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~ 357 (475)
|. |+++.+.+.+.....+..+..++..+.+ +|..|+ |+........+.++.+.+.+.|..++++. .++.|+|.|
T Consensus 237 ~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~-r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G 311 (395)
T COG2807 237 DR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ-RPLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGLGQG 311 (395)
T ss_pred Hc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhCccc
Confidence 76 9999999888777788888888887765 443332 45555566666777777767664444332 478999999
Q ss_pred HHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCC
Q 011925 358 LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP 408 (475)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~ 408 (475)
..++........++++.++. +...++..-...+=.++||.+.+.+.+..+
T Consensus 312 ~~F~laL~li~~rs~~a~~A-a~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 312 GAFPLALTLILLRSSDAAIA-AALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred hHHHHHHHHHHhhcCChHHH-HHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 99988877777665444333 133332222333334567888888876555
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=156.52 Aligned_cols=361 Identities=10% Similarity=-0.015 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHH
Q 011925 60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVG 139 (475)
Q Consensus 60 ~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (475)
..+.+.+++.+..++++.+.|.++||+|||..++ ...++..++..+... ....+....++.-++ +.|+.
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~-~~~~l~~~~~~~~~~-------s~~~~~~e~li~GR~---i~Gl~ 129 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALL-LSNLLAVLAALLMGL-------SKSAPSFEMLILGRL---IVGLA 129 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHH---HHHHH
Confidence 4577889999999999999999999999997744 444444444332221 011122223333332 55555
Q ss_pred HhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHH
Q 011925 140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGI 219 (475)
Q Consensus 140 ~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 219 (475)
.+.......-++.|.+| .+-||........+..+|.+++..++.+-+ +| .+..|++.+....+++++..+.
T Consensus 130 ~gl~~~~~pmyl~E~sP-~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i--lG------t~~~W~~l~~~~~i~~~~~l~~ 200 (485)
T KOG0569|consen 130 CGLSTGLVPMYLTEISP-KNLRGALGTLLQIGVVIGILLGQVLGLPSL--LG------TEDLWPYLLAFPLIPALLQLAL 200 (485)
T ss_pred hHHHHHHHHHHHhhcCh-hhhccHHHHHHHHHHHHHHHHHHHHccHHh--cC------CCcchHHHHHHHHHHHHHHHHH
Confidence 55555555556889987 688999999999999999888876665432 22 3568999888877777666555
Q ss_pred Hhhcccccccc-----cc--------------c--CC------------Cc--chHHHHHHHHhchhHHHHHH----HHH
Q 011925 220 FLSRTEEPRLK-----MG--------------L--RG------------NS--HARISWAYWFKKILYYQVAL----VYM 260 (475)
Q Consensus 220 ~~~~~~e~~~~-----~~--------------~--~~------------~~--~~~~~~~~l~~~~~~~~~~~----~~~ 260 (475)
. .+.||+++- .+ + ++ +. +...++++++||+..+.-.. ..+
T Consensus 201 l-~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~ 279 (485)
T KOG0569|consen 201 L-PFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSF 279 (485)
T ss_pred H-hcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHH
Confidence 4 455665320 00 0 00 00 02235778999877654322 223
Q ss_pred HHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHhhc--
Q 011925 261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILIL-- 337 (475)
Q Consensus 261 ~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~k~~~~~~~~~~~~~~~~~~~~-- 337 (475)
+..+.......++.+.+..+.|+++.++.+.....++..++..++..+ ++|.+| |++++.++.++.++.+++...
T Consensus 280 ~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gR--RpLll~~~~~~~~~~~~~~~~~~ 357 (485)
T KOG0569|consen 280 AQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGR--RPLLLISLSLMAVALLLMSIALF 357 (485)
T ss_pred HHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334556666667777998887777777777777788877766 477776 677777777777665544332
Q ss_pred -CCch-HHHH---HHHHHHHHHHHHH-HHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCCccc
Q 011925 338 -PMNM-SAFM---YVLAIFVGIANAL-MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVL 411 (475)
Q Consensus 338 -~~~~-~~~~---~~~~~l~g~g~~~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~~~~ 411 (475)
.... .|.- +.+.++..+.++. ..|..+-+..+++|++.+. .+.++..+.+.+...+-+...-.+...-+
T Consensus 358 l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~--aa~s~~~~~~w~~~fiv~~~fp~l~~~~g--- 432 (485)
T KOG0569|consen 358 LSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS--AAQSVATAVNWLSNFIVGFAFPPLQNVIG--- 432 (485)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 1111 2222 2333444444443 2466777888999999998 67776666666666555443322211101
Q ss_pred cCCCcccccccccCCCCCcHHHHHHHHHHHhhHhHHHHHHHHHHHhhccCCccC-hhhhHhhhc
Q 011925 412 DNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPY-SKPLVEPLL 474 (475)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 474 (475)
. +.+....+.+.+..+.+++..|+||.| ..|+.+++.
T Consensus 433 ------------------------~--~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 433 ------------------------P--YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred ------------------------c--hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 1 123333334445555566788999855 466666654
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=146.51 Aligned_cols=329 Identities=14% Similarity=0.001 Sum_probs=195.5
Q ss_pred CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHH
Q 011925 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (475)
Q Consensus 55 g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 134 (475)
+.+....|.+-+.+.+...+++|.+|.++||+|||.+ ++.+.+..+++.. ++. .......++.-++
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv-ll~c~~~va~s~l-l~~---------~S~~F~afv~aR~--- 129 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPV-LLACLIGVALSYL-LWA---------LSRNFAAFVLARF--- 129 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHH-HHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHH---
Confidence 3466789999999999999999999999999999766 6777777777654 231 1122222333232
Q ss_pred HHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHH
Q 011925 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC 214 (475)
Q Consensus 135 l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
+.|+.-+-. -...++++|+.+ +|+|++.++.......+|.+++|.+++.+..+.... ..+.+..+.++..++..
T Consensus 130 l~Gi~kgnl-~v~rAiisdV~s-ek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~----g~~p~alP~~~v~i~a~ 203 (451)
T KOG2615|consen 130 LGGIFKGNL-SVIRAIISDVVS-EKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSIS----GSYPFALPCLLVFILAA 203 (451)
T ss_pred hhhhccCch-HHHHHHHHhhcC-hhhccceeeeeehhhhcchhhcchhhhHHHhhHhhh----ccCchHHHHHHHHHHHH
Confidence 344444333 234688999987 689999999999999999999999998887632111 12233333333333333
Q ss_pred HHHHHHhhcccccccccccC-CCc------c-------hH-HHHHHHHhchhHH-------HHHHHHHHHHHHHHhhhHH
Q 011925 215 CFVGIFLSRTEEPRLKMGLR-GNS------H-------AR-ISWAYWFKKILYY-------QVALVYMLTRLVVNVSQAY 272 (475)
Q Consensus 215 i~~~~~~~~~~e~~~~~~~~-~~~------~-------~~-~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 272 (475)
.-......+.||+-..++++ ++. + .. ..--...||++.. .+.+-++.....+.....+
T Consensus 204 ~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t 283 (451)
T KOG2615|consen 204 GDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENT 283 (451)
T ss_pred HHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 31222233456642211111 000 0 00 0011244555422 2223333444444444444
Q ss_pred HHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 011925 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLK----AYYSAGGVLWVFCGAGILILPMNMSAFMYVL 348 (475)
Q Consensus 273 ~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (475)
.+.+..+..|+++.+.+.+....++...+...... +..+|.| -....+...+.-.++.+... .....++..
T Consensus 284 ~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~---~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--~~~~~l~~~ 358 (451)
T KOG2615|consen 284 VLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALV---PILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--RTPVVLYLG 358 (451)
T ss_pred HHHhhcCccCCChhhheeeeehhhHHHHHHHHhcc---ccccccccchhhHHHHHHHHHHHHHHHHhcc--ccchhhhHH
Confidence 55555677888888888666655554444443322 2223222 22223333332222222222 233455677
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCCcc
Q 011925 349 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV 410 (475)
Q Consensus 349 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~~~ 410 (475)
..+..+..+...+...++.....|+.++| +..|+......++-++||.+.+...++....
T Consensus 359 s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG--~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~ 418 (451)
T KOG2615|consen 359 STLKSFSTASVVTCLTSLVHKYGPQSQRG--TLNGIFRSLGALARAIGPLVSGVIFSWSQGA 418 (451)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCcccch--HHHHHHHHHHHHHHHhhhhhhheeEEEecCC
Confidence 78888888888888888888889999999 8999888888899999999988877776543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=171.50 Aligned_cols=297 Identities=9% Similarity=0.027 Sum_probs=196.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
+.+..+...+..+..++.++...++++++..+.|++.+.+.+..++..++.|++.||+||||. +..+.++++++.++..
T Consensus 38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-i~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-IGIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE-EEecHHHHHHHHHHHh
Confidence 333444444555666667777777779999999999999999999999999999999999886 6667777777655433
Q ss_pred CCccCCccC-------------------------C----------------ccchhhhhHHHHHHHHHHHHHHhHhHhhh
Q 011925 109 GGCMPCRIL-------------------------S----------------TSTLKVETISYCVFAAIFNVGWAATQVAH 147 (475)
Q Consensus 109 ~~~~p~~~~-------------------------~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (475)
+|-... . ..+....+..+.+...+.|+|.+...+..
T Consensus 117 ---lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~ 193 (633)
T TIGR00805 117 ---LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG 193 (633)
T ss_pred ---ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence 220000 0 00000011122222347788888887878
Q ss_pred hhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccC----------CccchHH--HHHHHHHHHHHHHHH
Q 011925 148 MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK----------THADLEN--QYRWIAYSSIFIGCC 215 (475)
Q Consensus 148 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~i 215 (475)
.+++.|..+ +++|+++.++.+....+|..+++.+++.+.....+. ...|.++ +|+..|++.++++++
T Consensus 194 ~~~i~d~~~-~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 194 ISYIDDFAK-SKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred chhhhccCC-ccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 888999886 788999999999999999999998888877643210 0011122 488888888777766
Q ss_pred HHHHHhhcccccccc---cc----cC------CC----------cchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHH
Q 011925 216 FVGIFLSRTEEPRLK---MG----LR------GN----------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 272 (475)
Q Consensus 216 ~~~~~~~~~~e~~~~---~~----~~------~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (475)
..+..+++.++.+++ .+ ++ ++ .+..+.+++++|||.++...+..++.......+.+|
T Consensus 273 ~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~ 352 (633)
T TIGR00805 273 TSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITF 352 (633)
T ss_pred HHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444433322111 00 00 00 011245678999999998888888888888899999
Q ss_pred HHHHHhhhcccccchhhhHhHHHHH-HHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 011925 273 LAFYVINDLRMGQSAKALVPAIIYI-CSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 330 (475)
Q Consensus 273 ~~~y~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~ 330 (475)
+|.|+++..|+++.+++++.....+ +.+++.++.+++ +|+..+.|+.+..+.+...+.
T Consensus 353 lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 353 LPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred HHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence 9999999999998888766655443 456677776664 444433355555555554444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-19 Score=166.60 Aligned_cols=355 Identities=10% Similarity=0.021 Sum_probs=218.0
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
+++......+.++.+.+.-+.+...++-..+.+++++...|++.++..+..++..|++|+++||+.||++ +..|..+..
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-~~vG~~iW~ 109 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-IAVGIFIWT 109 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE-EeeHHHHHH
Confidence 3444556666666666666666554444444459999999999999999999999999999999999987 566777776
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
++.+..- ..+..|.+...+ .+.|+|-+...+...++++|.++ .++|++..++.+....+|..++..
T Consensus 110 ~Av~~~~----------fs~~Fwq~~l~R---~~vGiGeAs~~~ia~s~IaD~f~-~~~Rs~~~~ify~~ipvGsglG~v 175 (493)
T KOG1330|consen 110 LAVFASG----------FSNHFWQVLLCR---GFVGIGEASYSPIAPSLIADSFP-DDKRSRVLGIFYFAIPVGSGLGYV 175 (493)
T ss_pred HHHHHHH----------HHHHHHHHHHHH---HHhccchhhhcccchhHhhhcCc-chhhhHHHHHhhhhcccccceeEE
Confidence 6654322 123334444444 37888988888888999999997 788999999999988888777655
Q ss_pred HHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC---------CCcchHHHHHHHHhchhH
Q 011925 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---------GNSHARISWAYWFKKILY 252 (475)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~---------~~~~~~~~~~~l~~~~~~ 252 (475)
.+..+.+. ...|||.+...+++++++.++.+++.+||++...++ +..+..++++.+.|+|.+
T Consensus 176 vgs~va~~---------~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~ 246 (493)
T KOG1330|consen 176 VGSVVASL---------TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVF 246 (493)
T ss_pred eeeeeccC---------ccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCce
Confidence 44333221 223999999999999999999888888876522111 112345666778888877
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhc---ccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhH-----HHHHHH
Q 011925 253 YQVALVYMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLK-----AYYSAG 323 (475)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k-----~~~~~~ 323 (475)
....+.+....+....+.-|.|.+..... |.+.....++..+...++.+|....+.+ +++.++++ +.-.+.
T Consensus 247 v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~ 326 (493)
T KOG1330|consen 247 VLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLS 326 (493)
T ss_pred eeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHH
Confidence 66666666666666676777777665433 2222222344444444555555554444 33333221 111111
Q ss_pred HH----HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHH-HHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHH-H
Q 011925 324 GV----LWVFCGAGILILPMNMSAFMYVLAIFVGIANALM-MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIA-V 397 (475)
Q Consensus 324 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig-~ 397 (475)
.. +.+....+....+ .......+.++++|...... .+...++..+..+++++. +++++.....-+-+..+ |
T Consensus 327 ~~~g~~~s~~~L~~~~~~~-~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt--~a~a~~~~~~h~fgd~~~p 403 (493)
T KOG1330|consen 327 AALGAPLSIPFLFLFPAFT-SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRT--TAYALDTVFEHIFGDAASP 403 (493)
T ss_pred HhhhhhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhcccccccceeeEecCccccc--HHHHHHHHHHHHhccCCCc
Confidence 11 1111111111111 22222333344444433332 234555666667888887 77776655554444443 3
Q ss_pred HHHHHh
Q 011925 398 YVLQSY 403 (475)
Q Consensus 398 ~l~~~~ 403 (475)
.+++.+
T Consensus 404 ~ivGil 409 (493)
T KOG1330|consen 404 YIVGIL 409 (493)
T ss_pred ceehhH
Confidence 355443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-15 Score=142.84 Aligned_cols=333 Identities=9% Similarity=-0.020 Sum_probs=193.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHc-CCChhH-HHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHH
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRG-AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~-~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~ 106 (475)
.++-+|..++= ...++..+++.+. |+|..+ .|.+.++....+++.+.+.|+++||+|.||. +..+.+..++...+
T Consensus 32 lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~v-L~l~~l~Wsl~t~L 108 (511)
T TIGR00806 32 LCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPV-LVLQALSFVCVWLL 108 (511)
T ss_pred HHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHH
Confidence 44444444433 3345665666655 999999 9999999999999999999999999999887 45555555555433
Q ss_pred hcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011925 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (475)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (475)
... ..+... +...+ .+.|++.+... ++..++....| ++||+++.++...+..+|.++++.+++.+
T Consensus 109 ~~f---------a~Sl~~-L~i~R---~llGvaEA~~~-A~~syI~~WfP-~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 109 LLL---------GTSVWH-MQLME---VFYSVTMAARI-AYSSYIFSLVP-PSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHH---------HHHHHH-HHHHH---HHHHHHHHHHH-HHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 112222 22223 37888888777 88888888887 89999999999999999999988887773
Q ss_pred HHhhccCCccchHHHHHH---HHHHHHHHHHHHHHHHhhccccccc------c---------c-c---cC-C--Cc----
Q 011925 187 FSVSTAKTHADLENQYRW---IAYSSIFIGCCFVGIFLSRTEEPRL------K---------M-G---LR-G--NS---- 237 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~e~~~------~---------~-~---~~-~--~~---- 237 (475)
. ..+||+ +.++......+..++.++ .|.+++ . + + ++ + +.
T Consensus 174 ~-----------s~gWr~y~~Ln~Isl~s~~~a~~~a~~-LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (511)
T TIGR00806 174 V-----------TLGWISYSTLNIISLVFMTFSVFLALF-LKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLG 241 (511)
T ss_pred H-----------hcCchhHHHHHHHHHHHHHHHHHHHHh-CCCCchhhhhccccccccccccccccCCCCCccccchhhh
Confidence 3 224444 344433333333333332 221110 0 0 0 00 0 00
Q ss_pred --------chHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH
Q 011925 238 --------HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM 309 (475)
Q Consensus 238 --------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (475)
.....+++..+|+......+-..+...++.....|.-..-.+..+-.+...|.+-.+..+.+.+.++..+.+
T Consensus 242 ~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~ 321 (511)
T TIGR00806 242 TCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFV 321 (511)
T ss_pred hhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 011233455667765555555544544444444443322222111111133444444444555566666654
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHH
Q 011925 310 AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLD 389 (475)
Q Consensus 310 ~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 389 (475)
+..-++.. .+.++.+...-+.+++.....++.|..++..++++..+....+....-....-.++.-| ..+|++++..
T Consensus 322 ~~~w~~~~-~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~a--LvFGiNtfvA 398 (511)
T TIGR00806 322 NIRWARWS-KLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCA--LVFGINTFVA 398 (511)
T ss_pred cCCchhhH-HHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceE--EEEecHHHHH
Confidence 21112211 12222222222222222223468888899999999888888887777777777777788 9999988875
Q ss_pred HHHHH
Q 011925 390 KMSCG 394 (475)
Q Consensus 390 ~ig~~ 394 (475)
-+=..
T Consensus 399 l~LQt 403 (511)
T TIGR00806 399 TALKT 403 (511)
T ss_pred HHHHH
Confidence 54443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-16 Score=153.94 Aligned_cols=239 Identities=14% Similarity=0.028 Sum_probs=177.6
Q ss_pred HHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHH
Q 011925 52 TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV 131 (475)
Q Consensus 52 ~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 131 (475)
+|.+....+.+.+.+++.+...+++++.|.+.||+.-.|. +....+..++..++.. . ....+.++..+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~-l~~~~~~w~~~~~~~~-------~---~~s~~~~ialr- 141 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKG-LSVSGILWGLFGFLTA-------A---VHSFPGLIALR- 141 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHH-HHHHHHHHHHHHHHHH-------H---HhhhHHHHHHH-
Confidence 3446777889999999999999999999999999996554 3333333333222111 0 11122223323
Q ss_pred HHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHH
Q 011925 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF 211 (475)
Q Consensus 132 ~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (475)
.+.|+.-+...++...+++.+.. ++||+...++.++...+|++++++++..+...-+.. ...||||.|++-++
T Consensus 142 --~llGl~es~~wP~~~~~lg~wy~-~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~----~~~gW~~~FiI~G~ 214 (495)
T KOG2533|consen 142 --FLLGLFESGGWPGVVAILGNWYG-KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG----GLAGWRWLFIIEGV 214 (495)
T ss_pred --HHHHHHhcccchHHHHHHHhhcC-hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC----CcCCceeehhHHHH
Confidence 26777777777888888888775 789999999999999999999998887776532211 35799999999999
Q ss_pred HHHHHHHHHhhcccccccc-----ccc--------C-------CCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhH
Q 011925 212 IGCCFVGIFLSRTEEPRLK-----MGL--------R-------GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQA 271 (475)
Q Consensus 212 ~~~i~~~~~~~~~~e~~~~-----~~~--------~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (475)
+.++..++.++..|+.+.+ +++ + +++.....+++.+|++..|.+.+..++.....+....
T Consensus 215 i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~ 294 (495)
T KOG2533|consen 215 ITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSY 294 (495)
T ss_pred HHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHH
Confidence 8888888887777654321 000 0 0112456788999999999999999999999999999
Q ss_pred HHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH
Q 011925 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM 309 (475)
Q Consensus 272 ~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (475)
|+|.|+.+..|++..++..+.....++.+++.++.+.+
T Consensus 295 ~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~l 332 (495)
T KOG2533|consen 295 WLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYL 332 (495)
T ss_pred HHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHH
Confidence 99999999767888888888888888999999988876
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-15 Score=146.17 Aligned_cols=333 Identities=16% Similarity=0.109 Sum_probs=187.9
Q ss_pred HHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc---cC-CcchhHHHHHHHHHHHHHHhcCCccCCccCC
Q 011925 44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR---FG-HFKIWHGAGSVLVAVSFSSVFGGCMPCRILS 118 (475)
Q Consensus 44 ~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr---~G-rr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~ 118 (475)
..-..+|++|. |+++++.....++..+-. ...|++|.++|. +| |||+|++.+.++...+...+. ..|. .
T Consensus 9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~--~~~~-~-- 82 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLA--LLPA-S-- 82 (433)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHH--hccc-c--
Confidence 33445666665 999999999888887755 679999999997 46 788999888877755544333 1331 0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCC-ccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 011925 119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (475)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (475)
..+... ..... .+..+|+...++...++..|..++ +++|+...+..+....+|.+++..+.+++...
T Consensus 83 ~~s~~~-~~~~l---~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-------- 150 (433)
T PF03092_consen 83 ESSAAI-AVVLL---FLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-------- 150 (433)
T ss_pred cchhhh-HHHHH---HHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc--------
Confidence 111111 11121 257788999999999999888753 44478888888888888999888888777643
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc------CC-C-------cchHHHHHHHHhchhHHHHHH-HHHHH
Q 011925 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RG-N-------SHARISWAYWFKKILYYQVAL-VYMLT 262 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~------~~-~-------~~~~~~~~~l~~~~~~~~~~~-~~~~~ 262 (475)
.+++..+.+.+.+..+..+...+..+|+++.++. ++ + ++....+++.++.|..+...+ ..++.
T Consensus 151 --~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 228 (433)
T PF03092_consen 151 --FGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFF 228 (433)
T ss_pred --CCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2445555555555545544444555552211100 11 0 111233455666666555444 22222
Q ss_pred HHHHHhhhHHHHHHHhhhcc---cccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhc
Q 011925 263 RLVVNVSQAYLAFYVINDLR---MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILIL 337 (475)
Q Consensus 263 ~~~~~~~~~~~~~y~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~ 337 (475)
.............+..+..+ +++...+.+..+..++.+++..+.. +..++. |+++....++.++..+.-...
T Consensus 229 ~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~---~~~~~~~~R~~~~~t~~~~~~~~l~~~~l 305 (433)
T PF03092_consen 229 NLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYR---KYFSNWSWRRIFVVTTLVSVLASLFDLLL 305 (433)
T ss_pred HhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCHHHHHHHHHHHHHHHhcccEEE
Confidence 22111111101111223334 7776666555555555566655533 323322 676666655554433321111
Q ss_pred -C-C------chHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 338 -P-M------NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 338 -~-~------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
. . ++.+..+.-.++..+....-+-....+..+..|++.+| +.+++.....++|..++..+-.
T Consensus 306 v~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Eg--t~yall~s~~Nlg~~~s~~lg~ 375 (433)
T PF03092_consen 306 VTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEG--TVYALLASFSNLGSSVSSTLGA 375 (433)
T ss_pred EEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 11132233344555555554445556677889999999 7777766666666666655443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-14 Score=142.63 Aligned_cols=163 Identities=12% Similarity=0.087 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCc-c
Q 011925 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST-S 120 (475)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~-~ 120 (475)
..+.+.+...++.|+|..+++++.+++. ...+.+++.|++.||+|||+.+ ..+.++..++.++... +.. .. .
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vl-lig~ll~~iG~ll~al-a~~----~~i~ 117 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIF-VLSMTVFCLGTLLFAL-TFQ----EVIE 117 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHH-Hhc----cccc
Confidence 4445556655556999999999998854 4467888899999999999884 5556666666544331 000 00 0
Q ss_pred chhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHH
Q 011925 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (475)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
...+.+..++ .+.+.|.+..+++......++. |++|+++.++...+..+|..+.+.+...++ ..
T Consensus 118 ~s~~~l~l~r---~l~G~G~~~~~~~~~~~i~~~F--p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-----------~~ 181 (591)
T PTZ00207 118 GSVVRLSVYN---GLMTLGCMLFDLGAVVTVLSVF--PSNRGAVVAIMKTFTGLGSAILGSIQLAFF-----------SD 181 (591)
T ss_pred CcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 1222222333 2566777666666666666665 478999999999988888865443332222 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Q 011925 201 QYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (475)
Q Consensus 201 ~~~~~~~~~~~~~~i~~~~~~~~~~e~ 227 (475)
+|+..+++.++++++..++.+..++++
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 455555555555555554444444443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-16 Score=145.19 Aligned_cols=411 Identities=13% Similarity=0.014 Sum_probs=217.3
Q ss_pred CCCCccceeh---ccccchhHHHHHHHHHHHHHHHHHH---c-----CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccC
Q 011925 19 QPVGRWSVLY---YGSGHMLNDITAACWFTYLLLFLTD---I-----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG 87 (475)
Q Consensus 19 ~~~~~~~~~~---~~~g~~~~~~~~~~~~~~l~~~~~~---~-----g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~G 87 (475)
+.++|++... -|.|-|..+-+...++...+.+-.- . ++++...+.+-.+..+...++|.++|+++||+|
T Consensus 33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G 112 (538)
T KOG0252|consen 33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG 112 (538)
T ss_pred cchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3345665443 4444444444444444433333222 1 267788899999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCccCCccCC-ccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhh
Q 011925 88 HFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTS 166 (475)
Q Consensus 88 rr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~ 166 (475)
|||++.....++...+..+.. |-.... .....+ +..|+ .+.|+|.+.-++-..+..+|.+ +.++|+...+
T Consensus 113 RK~vYG~~liImIi~t~~~~~----s~~~~~~~~~m~~-L~~~R---~~LGiGIGGDYPlSAtI~SE~a-n~~~RGa~ia 183 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALSGL----SVGTTSPLGVMMT-LCFFR---FLLGIGIGGDYPLSATIMSESA-NKKTRGAFIA 183 (538)
T ss_pred chhhhhHHHHHHHHHHHHhcc----CCCCCCCcchhhH-HHHHH---HHhhccccCCCcchHHHhhhhh-hhccccceeE
Confidence 999986655554444432222 211111 112222 23344 3788888766555555566665 4788988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcc-----chHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-----c----
Q 011925 167 CRNAFTMVANLSLYAIAFIVFSVSTAKTHA-----DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----G---- 232 (475)
Q Consensus 167 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~-----~---- 232 (475)
...+.+..|.+.+.+++..+...+...... ..+.-||..+-+.++.++..+... ...||+++.+ +
T Consensus 184 avFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R-l~M~Et~~Y~al~~~~~~~a 262 (538)
T KOG0252|consen 184 AVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR-LKMPETARYTALVSKKLKQA 262 (538)
T ss_pred EEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh-hcCCcchhHHHHhhcCHhhh
Confidence 777777777777777776665554332111 134569998888777776665554 4566654211 0
Q ss_pred ---cCCC---------------cchHHH---HHHHHhchh---HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchh
Q 011925 233 ---LRGN---------------SHARIS---WAYWFKKIL---YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK 288 (475)
Q Consensus 233 ---~~~~---------------~~~~~~---~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~ 288 (475)
.+++ ...+.. +...+..+. +.......++.-.+.+....+....+. ..|..+...
T Consensus 263 ~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~ 341 (538)
T KOG0252|consen 263 AGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSAN 341 (538)
T ss_pred hhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcc
Confidence 0000 000111 112222221 112222233333444444444444443 334443322
Q ss_pred hh--------HhHHH-HHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc--hHHHHHHHHHHHH-HH
Q 011925 289 AL--------VPAII-YICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGILILPMN--MSAFMYVLAIFVG-IA 355 (475)
Q Consensus 289 ~~--------~~~~~-~~~~~~~~~~~~~-~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g-~g 355 (475)
.. ...+. ..+.+.+.++... +++++| |...+.|.+++.+..+.+...... +..-+.++..+.. ++
T Consensus 342 ~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGR--k~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~ 419 (538)
T KOG0252|consen 342 TYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGR--KYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFG 419 (538)
T ss_pred hHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhh--HHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHH
Confidence 21 11111 1111112222222 245555 555666777777666555443211 1111111112211 22
Q ss_pred HHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCCccccCCCcccccccccCCCCCcHHHHH
Q 011925 356 NALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYIS 435 (475)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (475)
.-...........+.+|.|-+| ++.|+.....|+|+.+|........... +.. .-
T Consensus 420 NFGPn~ttfivpaE~FParvR~--t~hGIsAA~GK~GAivg~~~F~~~t~~~-yp~----------------------~~ 474 (538)
T KOG0252|consen 420 NFGPNATTFIVPAEIFPARVRS--TCHGISAASGKAGAIVGAFGFLYLTDHN-YPP----------------------NI 474 (538)
T ss_pred hcCCCceeEEeehhhchHHHhh--hhhhHHHHhccchHHHHHHHhhHhhhcc-CCc----------------------cc
Confidence 2222334445566779999999 9999999999999999987765554311 110 00
Q ss_pred HHHHHHhhHhHHHHHHHHHHHhhccCCccChhh
Q 011925 436 VTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKP 468 (475)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
+.+..+. +-+.+.+++.++....|++|.+..|
T Consensus 475 g~~~v~~-i~~~~~~~gi~~T~l~pEtk~~~le 506 (538)
T KOG0252|consen 475 GVRNVFI-ILAGCMLLGILFTLLIPETKGKSLE 506 (538)
T ss_pred cchHHHH-HHHHHHHHhHheeEEeecccccCHH
Confidence 2233343 3345667777777778888766533
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=141.25 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHH
Q 011925 59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNV 138 (475)
Q Consensus 59 ~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (475)
.+.+++.++..+...+++++.|+++||+|||+.++ .+.+++.++.++... . .+.... ..-++ +.|+
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~-~~~~~~~iG~ii~~~-------a--~~~~~l-~~GR~---l~G~ 154 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL-LAVVLFLIGAIIIAL-------A--PSWYQL-IVGRI---LTGL 154 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHH-------h--hhHHHH-HHHHH---Hhcc
Confidence 45699999999999999999999999999999854 455555555443331 1 122332 33332 7889
Q ss_pred HHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHH
Q 011925 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG 218 (475)
Q Consensus 139 ~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 218 (475)
|.+........+++|+++ ++.|+...+..+....+|..++. +.+.... +...+||..+.+..+.+++..+
T Consensus 155 g~G~~~~~~piy~sEiap-~~~RG~l~~~~~l~~~~Gi~~~~-----~~~~~~~----~~~~~Wr~~~~~~~i~~~~~~~ 224 (513)
T KOG0254|consen 155 GVGGASVLAPVYISEIAP-AHIRGTLVSLYQLFITIGILLGY-----CINYGTS----KVYAGWRIPLGLALIPAVILAL 224 (513)
T ss_pred chhhhhhcchhhHhhcCC-hhhhHHHHHHHHHHHHHHHHHHH-----HHhhhhc----cCCccHHHHHHHHHHHHHHHHH
Confidence 999888888888999987 78999999988888777776652 2222110 0014899888888777777666
Q ss_pred HHhhcccccc
Q 011925 219 IFLSRTEEPR 228 (475)
Q Consensus 219 ~~~~~~~e~~ 228 (475)
. .+..||++
T Consensus 225 ~-~~~~pesp 233 (513)
T KOG0254|consen 225 G-MLFLPESP 233 (513)
T ss_pred H-HHhCCCCh
Confidence 6 56677654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-13 Score=129.11 Aligned_cols=262 Identities=13% Similarity=0.031 Sum_probs=167.7
Q ss_pred HHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCC-----c-cchHHHHHHHHHH
Q 011925 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT-----H-ADLENQYRWIAYS 208 (475)
Q Consensus 135 l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-----~-~~~~~~~~~~~~~ 208 (475)
+.+.|.+..++..+++++++.+ +|++.+..++.+....+|..++|.++..++..-.... . ......|++++++
T Consensus 19 ~~g~G~~~lq~~~n~~v~~~~~-~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ 97 (310)
T TIGR01272 19 VLASGLTILQVAANPYVSILGP-IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLL 97 (310)
T ss_pred HHHhhHHHHHhhHHHHHHHHCC-cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHH
Confidence 7888999999999999999986 6678888899999999999999999887763210000 0 0012578998886
Q ss_pred HHHHHHHHH-HHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhh--ccccc
Q 011925 209 SIFIGCCFV-GIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQ 285 (475)
Q Consensus 209 ~~~~~~i~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--~g~~~ 285 (475)
.+.+..+.. ++.+...||.+++++++.+.+.....++.+|+|.++...+..++..........|++.|+.+. .|+++
T Consensus 98 ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~ 177 (310)
T TIGR01272 98 LAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPE 177 (310)
T ss_pred HHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 655443333 333333444322211111111111223567888877666666666557778899999999854 58888
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHh
Q 011925 286 SAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGI 364 (475)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~ 364 (475)
.+.+........+..++.++.+++ +|++. ||.+.++..+.+++..+....+ +... .....+.|++.+..+|...
T Consensus 178 ~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~--~~~l~~~~~l~~~~~~l~~~~~--~~~~-~~~~~l~g~~~s~i~P~~~ 252 (310)
T TIGR01272 178 DQAAHFTAYTWGGAMVGRFIGSAVMPMISQ--GRYLAFNAFLAVLLSIGAALTH--GYVA-MWFVLALGLFNSIMFPTIF 252 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHcC--CHHH-HHHHHHHHHHHHHHHHHHH
Confidence 777777666667777777776654 44443 5566666665555544333332 2222 2345578899999999888
Q ss_pred hhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhccc
Q 011925 365 SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM 406 (475)
Q Consensus 365 ~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~ 406 (475)
+...+..+++ .+ ...++.. ...+|+++.|.+.+.+.+.
T Consensus 253 s~a~~~~~~~-~~--~asai~~-~~~~Gg~i~P~l~G~lad~ 290 (310)
T TIGR01272 253 SLALNALGRH-TS--QGSGILC-LAIVGGAIVPLLQGSLADC 290 (310)
T ss_pred HHHHhhhhhh-hh--hhHHHHH-HHHhcchHHHHHHHHHHHh
Confidence 8776655543 34 3344543 4568888999988887643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.8e-12 Score=130.19 Aligned_cols=314 Identities=12% Similarity=0.025 Sum_probs=170.7
Q ss_pred Hc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHH
Q 011925 53 DI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV 131 (475)
Q Consensus 53 ~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 131 (475)
+. ..+.....+..+++.+...++..++|.++||+|||+++++...+.........+. ...+.+...+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-----------~~~~~~~~~R- 178 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-----------PNYWMFLIFR- 178 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHH-
Confidence 44 8899999999999999999999999999999999998655444444444333331 2233334444
Q ss_pred HHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHH
Q 011925 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF 211 (475)
Q Consensus 132 ~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (475)
++.|++.+........+..|+.. +++|+....+ ......++.+++...+.+. .+||+.+++..+
T Consensus 179 --fl~G~~~~~~~~~~~~~~~E~~~-~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~------------~~Wr~~~~~~~~ 242 (521)
T KOG0255|consen 179 --FLSGFFGSGPLTVGFGLVAEIVS-PKQRGLALTL-GGFFFVGGLMLPAGAAYIT------------RDWRWLFWIISI 242 (521)
T ss_pred --HHHHhhccchhHHhHhhheeecC-cchhhHHHHH-HHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHH
Confidence 37777777777778888999986 8899998888 5555555555444443332 389999999888
Q ss_pred HHHHHHHHHhhcccccccc-------cc------c--C---CCcchH--------------------HHHHHHHhchhHH
Q 011925 212 IGCCFVGIFLSRTEEPRLK-------MG------L--R---GNSHAR--------------------ISWAYWFKKILYY 253 (475)
Q Consensus 212 ~~~i~~~~~~~~~~e~~~~-------~~------~--~---~~~~~~--------------------~~~~~l~~~~~~~ 253 (475)
...+..++ ++..+|.++- ++ + + .+.+.. ..+..+++.+++.
T Consensus 243 ~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 321 (521)
T KOG0255|consen 243 PSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLR 321 (521)
T ss_pred HHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHH
Confidence 77766655 4455554310 00 0 0 000000 1123334444322
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHH
Q 011925 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGA 332 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~k~~~~~~~~~~~~~~~ 332 (475)
...+...+.++. .....|--.+..+.+|.+.. ......+..........+. ..+.+| |.....+..+..++++
T Consensus 322 ~~~~~~~~~~~~-~~~~y~gl~~~~~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR--~~~~~~~~~~~~~~~~ 395 (521)
T KOG0255|consen 322 YRTLYLLFIWFV-FSLVYYGLSLNVSGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGR--RPPLFLSLFLAGIGLL 395 (521)
T ss_pred HHHHHHHHHHHH-HhHHHHhhhhhhhhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHH
Confidence 222222222211 11111111222222333321 1111111111222222222 233333 4556666666677766
Q ss_pred HHhhcCCchH-HHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 333 GILILPMNMS-AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 333 ~~~~~~~~~~-~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
...+.+.... +...+...+..++.+..+.....+..+..|...+. ...+..+....+++.+++.+.-..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~--~~~~~~~~~~~~~~i~ap~~~~~~ 465 (521)
T KOG0255|consen 396 LFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN--TAVGAISAAARLGSILAPLFPLLL 465 (521)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666553332 12233333333444444444455556666665555 567777888889988888776443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-12 Score=122.53 Aligned_cols=357 Identities=12% Similarity=0.061 Sum_probs=202.9
Q ss_pred ceehccccchhHHHH---HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 25 SVLYYGSGHMLNDIT---AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~---~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
..+.+++-++.+.+- ++.++.+...|| | |...+-|...++.+.........=|+.||+|-|...+ .+..+-+
T Consensus 46 vLl~~slL~~SN~~qWI~ya~i~n~~~~~Y---g-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l-lgt~ln~ 120 (480)
T KOG2563|consen 46 VLLAFSLLNFSNGMQWIQYAPINNYVNSFY---G-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL-LGTVLNG 120 (480)
T ss_pred HHHHHHHHHhcCcchheeehhHHHHHHHHh---c-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH-HHHHHHH
Confidence 344555555555332 233333333333 5 7778889999999999999999999999999988754 4555544
Q ss_pred HHHHHhcCCccCCccCCcc-chhhhhHHHHHHHHHHHHHHhHhHhhhh---hhhcccCCCccchhhHhhHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTS-TLKVETISYCVFAAIFNVGWAATQVAHM---SMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~---al~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (475)
++...=. .+ ..+.. ...+.-+.. .-+.-.+..++-.. +-+++....++||..+......+..+|..
T Consensus 121 iGa~Ir~---is--s~p~v~~~f~~~l~~-----~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGva 190 (480)
T KOG2563|consen 121 IGAWIRL---IS--SLPFVPPLFRRPLTH-----TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVA 190 (480)
T ss_pred HHHHHhh---hc--cCccccccchhhhhH-----HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHH
Confidence 4432211 11 01111 111100111 11111111121111 22344444589999999988888889988
Q ss_pred HHHHHHHHHHHhhccCCccchHHHHHH--HHHHHHHHHHHHHHHHhhccccccccccc--C---CCcchHHHHHHHHhch
Q 011925 178 SLYAIAFIVFSVSTAKTHADLENQYRW--IAYSSIFIGCCFVGIFLSRTEEPRLKMGL--R---GNSHARISWAYWFKKI 250 (475)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~e~~~~~~~--~---~~~~~~~~~~~l~~~~ 250 (475)
++.++.+.++..- . .++...|.. .++....++.+.+.+..+..+|+++.++. + .+.+..++.++.+||+
T Consensus 191 vg~llppilV~~~-~---~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~ 266 (480)
T KOG2563|consen 191 VGFLLPPILVPSS-K---DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNR 266 (480)
T ss_pred HHhhccceecCCC-C---CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCc
Confidence 8877766655321 0 123455655 35544444444444444444443322211 1 1235778899999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 011925 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFC 330 (475)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~ 330 (475)
+|.++.+.+......++...+.+-.-+ ...|++...+|.......+++++++.+++.+.++.|++|...++......++
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 998887776655444444333322122 2235665666777777777888888888877555666666655555544444
Q ss_pred HHH-Hhhc-CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 331 GAG-ILIL-PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 331 ~~~-~~~~-~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
... .... .....+.++....+.|.+.....|....+..+.+-+..+| +..|+.++..++-+.+=..+.+..
T Consensus 346 ~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~--tSsGll~~~gq~f~~~~~~~~~~~ 418 (480)
T KOG2563|consen 346 TLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEG--TSSGLLNLSGQIFGVILVFIMGIL 418 (480)
T ss_pred HHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCc--ccceeEEeehhHHHHHHHHHHHHH
Confidence 221 1111 1223344556666777777777787888877777777777 667765555554444444444443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-12 Score=122.44 Aligned_cols=339 Identities=13% Similarity=0.025 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHHc-C----CChhHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHHHHHHHHHHHhcCCc
Q 011925 38 ITAACWFTYLLLFLTDI-G----LSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGC 111 (475)
Q Consensus 38 ~~~~~~~~~l~~~~~~~-g----~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr-~Grr~~~l~~~~~~~~~~~~~~~~~~ 111 (475)
+.++-.-..|..|++.. + ++.++..-+++.+.-.--++..+.|+++|| +|+||. +..|.+++.++-+.+..
T Consensus 35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t-I~lGail~~iGh~~L~~-- 111 (498)
T COG3104 35 FSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT-IVLGAILMAIGHLVLAI-- 111 (498)
T ss_pred HhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHhc--
Confidence 33333444455555543 6 999999999999999888999999999999 799998 66777777777665552
Q ss_pred cCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccc-hhhHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011925 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS-RVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (475)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~-R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (475)
+ +........+... +..+|.+.+-....+++.+..++.|. |....+..+.+.++|+.+++.+.+.+.
T Consensus 112 -~----~~~~~~gl~i~L~----~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~--- 179 (498)
T COG3104 112 -S----SVSGPGGLYIGLA----LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA--- 179 (498)
T ss_pred -c----ccccccHHHHHHH----HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH---
Confidence 2 1011112222222 45588888877778888888764333 455677778888899888887776654
Q ss_pred ccCCccchHHHHHHHHHHHHHHH---HHHHHHHhhcccccc---cccccCCCcch-----------HH---------H--
Q 011925 191 TAKTHADLENQYRWIAYSSIFIG---CCFVGIFLSRTEEPR---LKMGLRGNSHA-----------RI---------S-- 242 (475)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~e~~---~~~~~~~~~~~-----------~~---------~-- 242 (475)
.+.+|...|...++-- ++..++..+..++.. ++.+.+.+... .. .
T Consensus 180 -------~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (498)
T COG3104 180 -------INYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFS 252 (498)
T ss_pred -------HhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888776654422 222222221111111 11000000000 00 0
Q ss_pred --------------HHHHH------hch-hHHH---HHHHHHHHHHHHHhhhHHHHHHHhhhc-----ccccchhhhHhH
Q 011925 243 --------------WAYWF------KKI-LYYQ---VALVYMLTRLVVNVSQAYLAFYVINDL-----RMGQSAKALVPA 293 (475)
Q Consensus 243 --------------~~~l~------~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~-----g~~~~~~~~~~~ 293 (475)
+++.+ .+| +.+. +.+.....+..+....+-+..|..+.. |++- ..++...
T Consensus 253 ~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~v-p~~~fQs 331 (498)
T COG3104 253 GVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEV-PPAWFQS 331 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceec-CHHHHHh
Confidence 00111 111 1222 222233333333334444444443322 2111 1234444
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhhh-----HHHHHHHHHHHHHHHHHHhhc-------C-CchHHHHHHHHHHHHHHHHHH
Q 011925 294 IIYICSFIVSILLQE-MAWTGQRL-----KAYYSAGGVLWVFCGAGILIL-------P-MNMSAFMYVLAIFVGIANALM 359 (475)
Q Consensus 294 ~~~~~~~~~~~~~~~-~~~~~~r~-----k~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~l~g~g~~~~ 359 (475)
+..+.-++.+++..+ +.+++++. +.-+-++..++..+++++... . ..+.++.+...+++++|.-+.
T Consensus 332 lNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~i 411 (498)
T COG3104 332 LNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFI 411 (498)
T ss_pred hCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 444445555555444 56644432 223555666655555444332 1 135667778889999999999
Q ss_pred HHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 360 MVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 360 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
.|...++...+.|++..+ ..++++-+....|+.+++.+.+
T Consensus 412 SpvGLs~~t~laP~~~~s--~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 412 SPVGLSMVTKLAPPALKS--FIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred CHHHHHHHHHhChHHHHH--HHHHHHHHHHHHHHHhhceecc
Confidence 999999999999999999 8888888888888887776554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.3e-18 Score=170.23 Aligned_cols=317 Identities=14% Similarity=0.081 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHH
Q 011925 59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNV 138 (475)
Q Consensus 59 ~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (475)
.+.+++.+...+...++.++.|.++||+|||+.++. +..+..++.++... .| ...+.+. +...+ .+.|+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~-~~~~~~i~~~~~~~--~~----~~~~~~~-~~~~R---~~~G~ 114 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALII-SALLMIIGSILIAF--AP----SYNNFWM-LLIGR---FLIGF 114 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccc-cccccccccccccc--cc----ccccccc-ccccc---ccccc
Confidence 467899999999999999999999999999998554 44444444332221 11 0012222 23333 26778
Q ss_pred HHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHH
Q 011925 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG 218 (475)
Q Consensus 139 ~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 218 (475)
+.+........++.|..+ +++|++.....+....+|.+++..+.... ... +.++.||..+.+..+++++..+
T Consensus 115 ~~g~~~~~~~~~~~E~~~-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~------~~~~~Wr~~~~~~~~~~l~~~~ 186 (451)
T PF00083_consen 115 GIGGAYVVSPIYISEIAP-PKHRGFLSSLFQLFWALGILLASLIGYIV-SYY------SDNWGWRILLIFGAIPSLLVLL 186 (451)
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccc-ccc------cccccccccccccccccccccc
Confidence 888887888888999987 78899998888888778877765554333 111 1135799998887776655544
Q ss_pred HHhhcccccccc-------cc------c--------CC----CcchH------HHHHHHHhchhH----HHHHHHHHHHH
Q 011925 219 IFLSRTEEPRLK-------MG------L--------RG----NSHAR------ISWAYWFKKILY----YQVALVYMLTR 263 (475)
Q Consensus 219 ~~~~~~~e~~~~-------~~------~--------~~----~~~~~------~~~~~l~~~~~~----~~~~~~~~~~~ 263 (475)
.. ...||+++- ++ + ++ +++.+ ..++++++++.. ........+..
T Consensus 187 ~~-~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 265 (451)
T PF00083_consen 187 LR-FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQ 265 (451)
T ss_pred cc-cccccccceecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccc
Confidence 43 456665310 00 0 00 00001 124556666431 11122222222
Q ss_pred HHHHhhhHHHHHHHhhhcccccc-hhhhHhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHh---hcC
Q 011925 264 LVVNVSQAYLAFYVINDLRMGQS-AKALVPAIIYICSFIVSILLQE-MAWTGQRLKAYYSAGGVLWVFCGAGIL---ILP 338 (475)
Q Consensus 264 ~~~~~~~~~~~~y~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~k~~~~~~~~~~~~~~~~~~---~~~ 338 (475)
........++..++.+..+.+.. .... ...+..+++.++... .+|++| |+.++.+.....++...+. ...
T Consensus 266 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~GR--r~~~i~~~~~~~~~~~~~~~~~~~~ 340 (451)
T PF00083_consen 266 FSGINFIFYYSPSIFENAGISNSFLATL---ILGLVNFLGTLLAIFLIDRFGR--RKLLIIGLLLMAICSLILGIIFFLG 340 (451)
T ss_pred cccccccccccccccccccccccccccc---cccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 22222334444444455566554 1111 112233333333323 355565 5666677666665544442 111
Q ss_pred Cch----HHHHHHHHHHHHHHHH-HHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 339 MNM----SAFMYVLAIFVGIANA-LMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 339 ~~~----~~~~~~~~~l~g~g~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
.++ ....+....+...+.+ ...+....+..+..|.+.++ ...++.....++++.+++.+...
T Consensus 341 ~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~--~~~~~~~~~~~i~~~i~~~~~~~ 407 (451)
T PF00083_consen 341 VSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS--TGIGLSYAVGRIGGFIIPFLFPY 407 (451)
T ss_pred cccccccccccceeeeeccccccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 111 1122222222222222 22344446667777777766 55565556666777666655433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=126.84 Aligned_cols=374 Identities=10% Similarity=0.055 Sum_probs=199.5
Q ss_pred CCCCCccceehccccchhHHHHHHHHHHHHHHHHHHc--CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCC-cchhHH
Q 011925 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH-FKIWHG 94 (475)
Q Consensus 18 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~--g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Gr-r~~~l~ 94 (475)
+++-+||....-.+-++....-+++..+-.=+|+++. +.++...|++.+...+..++..|++|+++.|.|+ ||| ++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P-li 106 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP-LI 106 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC-HH
Confidence 3455677666666666666665555555555788874 8889999999999999999999999999999886 788 56
Q ss_pred HHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHH
Q 011925 95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 174 (475)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~ 174 (475)
.+.+...++-++-. ++. ..++...++.++.+. +.|+|.+.. ....+++++.+. .++|.|+.+....+..+
T Consensus 107 ~s~ii~~~g~llY~--~l~--~~~~~~~y~mL~~R~----l~Gvg~~n~-a~lR~Y~a~~s~-~~dR~rA~a~~~~~~vl 176 (488)
T KOG2325|consen 107 VSFLIAIIGNLLYL--ALA--YVPNGVKYLMLVARI----LTGVGVGNF-AVLRAYIADAST-VEDRPRAFAATSGGFVL 176 (488)
T ss_pred HHHHHHHHHHHHHH--HHH--hcccchHHHHHHHHH----HcCcCcccH-HHHHHHHHhccC-ccchHHHHHHhhhHHHH
Confidence 66666666643321 011 111222333333343 566665543 234566667665 67898988888787788
Q ss_pred HHHHHHHHHHHHHHhhccCCc---c-chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCC--cchHHHHHHHHh
Q 011925 175 ANLSLYAIAFIVFSVSTAKTH---A-DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN--SHARISWAYWFK 248 (475)
Q Consensus 175 g~~~~~~~~~~l~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~l~~ 248 (475)
|.++|+.+...+.. ++..|. . ..-+.+..+.++.+++.++..++.+...+|..+...++++ ++..+.-++-.+
T Consensus 177 g~ilGp~~q~~f~~-Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~~~~~~ 255 (488)
T KOG2325|consen 177 GIILGPTIQLAFTP-LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSDIEKVK 255 (488)
T ss_pred HHHHhHHHHHHHhh-hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccchhhhc
Confidence 88888877644433 332221 0 1123355556666666666666666666775443221111 100111111122
Q ss_pred chh--HH---HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHH-HHHHHHHHHHHHHH--HHHHhhhh-HHH
Q 011925 249 KIL--YY---QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAI-IYICSFIVSILLQE--MAWTGQRL-KAY 319 (475)
Q Consensus 249 ~~~--~~---~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~r~-k~~ 319 (475)
+++ +. ...+..+...+......+..+.......+....++...... ..+..++..++... .-++++.. |+.
T Consensus 256 ~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~ 335 (488)
T KOG2325|consen 256 KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRI 335 (488)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcccee
Confidence 222 11 12223333334444445555555555556655443322222 12223333322211 12222211 333
Q ss_pred HHHHHHHHHHHHHHHhh-cC--C------c--------------------hHHHHHH-HHHHHHHHHHHHHHhHhhhhhh
Q 011925 320 YSAGGVLWVFCGAGILI-LP--M------N--------------------MSAFMYV-LAIFVGIANALMMVTGISMQNV 369 (475)
Q Consensus 320 ~~~~~~~~~~~~~~~~~-~~--~------~--------------------~~~~~~~-~~~l~g~g~~~~~~~~~~~~~~ 369 (475)
+..+..+...+..+... .+ . + +.+.+++ ..++.|++.........+..++
T Consensus 336 ~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk 415 (488)
T KOG2325|consen 336 ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK 415 (488)
T ss_pred eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence 34443333322221111 00 0 0 0111111 1233444444344455666777
Q ss_pred hccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 370 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 370 ~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
..++|++| +..++..+....+..+|+.+....+.
T Consensus 416 iLgp~~q~--~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 416 ILGPRDQG--TMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred HhCCcccc--ceeEEEEeccchhhhhhHHHHhhhHH
Confidence 78999999 88888888888888888877766553
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-10 Score=105.19 Aligned_cols=167 Identities=17% Similarity=0.104 Sum_probs=104.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCC
Q 011925 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (475)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~ 110 (475)
-+.....+..+..+.+.+-.... |.+..+..++.........+..-.+|.++||+||||.+.+....-+....+--
T Consensus 85 ~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~--- 161 (528)
T KOG0253|consen 85 MGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISG--- 161 (528)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhc---
Confidence 34445666777777777777777 99999999999999999999999999999999999986443332222222211
Q ss_pred ccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhh-hhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAH-MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
.++ +..++...+. +.+.|.+. .|. .++-.+.-| ..+|...+-.. ....+|.+....+....+.
T Consensus 162 -----~sp--nf~~L~~f~~----l~~~g~gg--~pv~~~~yle~lp-~~~r~~~~V~~-~~waig~v~ea~law~vm~- 225 (528)
T KOG0253|consen 162 -----ASP--NFASLCVFRA----LWGFGVGG--LPVDSAIYLEFLP-SSHRWLLTVMS-FFWAIGQVFEALLAWGVMS- 225 (528)
T ss_pred -----CCC--CeehhhHHHH----HHhccCCC--ccHhHHHHHHhcc-CcCCCcchhHH-HHHHHHHHHHHHHHHHHHH-
Confidence 111 2222222222 55555555 333 345555555 44566554333 6677888887777666553
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011925 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~ 227 (475)
+.||||..........+... .++.++|+
T Consensus 226 ---------~~gwr~~l~~~~~pl~~~a~-f~~w~~ES 253 (528)
T KOG0253|consen 226 ---------NFGWRYLLFTSSTPLMFAAR-FLVWVYES 253 (528)
T ss_pred ---------hhhHHHHHHHHHhHHHHHHH-HHhhcccC
Confidence 45888877666544333333 33456664
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-12 Score=111.60 Aligned_cols=333 Identities=10% Similarity=0.055 Sum_probs=198.0
Q ss_pred HcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHH
Q 011925 53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV 131 (475)
Q Consensus 53 ~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr-~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 131 (475)
|.+++.+..-++.++++.-+.+.-.+.|++.|| +|-|..-++.....+..=. +|. ...-....|....-++
T Consensus 73 d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~Gql--iFa------~Ggi~~aFw~M~~GRF 144 (459)
T KOG4686|consen 73 DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQL--IFA------AGGISHAFWTMLAGRF 144 (459)
T ss_pred ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHH--HHH------hchHHHHHHHHHhhhe
Confidence 347788889999999999999999999999998 6765432222222221111 221 0011112222233332
Q ss_pred HHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCc--cchHHHHHHHH-HH
Q 011925 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH--ADLENQYRWIA-YS 208 (475)
Q Consensus 132 ~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~-~~ 208 (475)
++|+|.--..+..+.+...+.. .||-+...+.......+|+.+-..+.+++...++..-. +....|-...+ ..
T Consensus 145 ---~FGIGgESlAVaQN~yav~wFK-GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~ 220 (459)
T KOG4686|consen 145 ---LFGIGGESLAVAQNKYAVYWFK-GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVK 220 (459)
T ss_pred ---eeccCchhhhhhhcceeEEEec-CccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 5666554455666777777665 67888889998888888887666666777655432110 00111211111 11
Q ss_pred HHHHHHHHHHHHhhccccc---ccccccC--CCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccc
Q 011925 209 SIFIGCCFVGIFLSRTEEP---RLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 283 (475)
Q Consensus 209 ~~~~~~i~~~~~~~~~~e~---~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~ 283 (475)
.....+++.... -..+++ .-..++. .+....+..+. -.+++|.+.+...+...+.+.+...-|.++++..|+
T Consensus 221 tc~~slical~l-g~~D~rAerilh~e~g~~Ge~pkLtdv~~--f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGl 297 (459)
T KOG4686|consen 221 TCKQSLICALSL-GLSDDRAERILHLEEGFLGEEPKLTDVNT--FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGL 297 (459)
T ss_pred HHHHHHHHHHHh-hhhhhHHHHHHhhhcCcccCCcccccccc--cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCC
Confidence 111222222111 111111 1111110 01111111000 136789888888888888888888899999999999
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHH-HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 011925 284 GQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYY-SAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMV 361 (475)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 361 (475)
++..++.+.......+.+.+++.+.+ +|.++ +... ..++....++-..+++... ++ +..+.+.|+.+...-.
T Consensus 298 S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~--n~~wv~~a~~~tl~~H~~l~Ft~l-sP---y~~m~~lGLsysllAc 371 (459)
T KOG4686|consen 298 SAVSAGNILSTVYGISAVLSPVFGAISDKYGF--NLWWVASACILTLLGHSGLFFTFL-SP---YTSMTFLGLSYSLLAC 371 (459)
T ss_pred ChhhccchhhhhhhhhhhhhhhHHHhHhhhcc--eehhHHHHHHHHHHHhhhHHhhhc-cH---HHHHHHHhhhHHHHHH
Confidence 98877766666555566666666654 34433 2222 2334444444444444332 22 3456678888887777
Q ss_pred hHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCC
Q 011925 362 TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP 408 (475)
Q Consensus 362 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~ 408 (475)
..+.+.....|+++-| +.+|...-.+++|-++.+.+.+.+.+..+
T Consensus 372 slWP~va~~vpE~qLG--Taygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 372 SLWPCVASLVPEEQLG--TAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHhhhhhhhCCHHHhc--chHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 7788888899999999 99999999999999999999998876544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-11 Score=118.20 Aligned_cols=302 Identities=15% Similarity=0.094 Sum_probs=186.1
Q ss_pred HHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHH-HHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHh
Q 011925 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV 145 (475)
Q Consensus 67 i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (475)
...+...+..|..|.++||||||.++.+ ....+.+. ..+.+ ..+|.++.. -...++.+...
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~-~~~~~~l~~~~~~~------------~~~~~~~~~-----~l~g~~~~~~s 131 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLL-PLFGTILPALCLLF------------QGYWFFLLL-----GLSGGFSAIFS 131 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHH-HHHHHHHhHHHHHH------------HHHHHhhhc-----ccccchhhhhh
Confidence 3467788999999999999999887443 33333333 22222 012221110 11233444555
Q ss_pred hhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011925 146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE 225 (475)
Q Consensus 146 ~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 225 (475)
...++++|.+. .++|....++.+.....+..+++.++..+... .+.-..+.+..+..++..+......|
T Consensus 132 ~~~a~vadis~-~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----------~~~a~~f~ia~~~~~~~~~y~~~~l~ 200 (463)
T KOG2816|consen 132 VGFAYVADISS-EEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----------LGIALVFLIAAASGILSLLYMLLFLP 200 (463)
T ss_pred hhhhheeeccc-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------cCchHHHHHHHHHHHHHHHHHhhccc
Confidence 56788899886 67898888888776777777777776666542 35666677777777777777777888
Q ss_pred ccccccccC---------CC---cchHHHHHHHHh---chhHHHHHHHHHHHHHHHHh-hhHHHHHHHhhhcccccchhh
Q 011925 226 EPRLKMGLR---------GN---SHARISWAYWFK---KILYYQVALVYMLTRLVVNV-SQAYLAFYVINDLRMGQSAKA 289 (475)
Q Consensus 226 e~~~~~~~~---------~~---~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~g~~~~~~~ 289 (475)
|+..+++++ .+ ....+.++...| +|..+.+....++....... ..-..+.|+....++++.+.+
T Consensus 201 Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s 280 (463)
T KOG2816|consen 201 ESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS 280 (463)
T ss_pred cccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH
Confidence 876543322 00 111223333332 33344444443333333222 221346667777888888887
Q ss_pred hHhHHHHHHHHHHHHHHHH-H-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 011925 290 LVPAIIYICSFIVSILLQE-M-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQ 367 (475)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~ 367 (475)
.+.........++..+..+ + ..++. |+....|+..-.+....+.+.. +.|.++....+.++ .....+...+..
T Consensus 281 ~~~~~~~~~~~i~~l~~~~~l~~~l~~--~~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~~~-~~~~~pa~~s~~ 355 (463)
T KOG2816|consen 281 DLLSLVSILGIISQLLLLPLLSSILGE--KRLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVVAL-AGIVFPAIRAFA 355 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHh-hcchhHHHHhHH
Confidence 6666666666666665543 3 33444 5677888888888777776644 44554444443333 344566677777
Q ss_pred hhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 368 NVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 368 ~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+...+++.+| .++++......+.+.+++.+.+.+.
T Consensus 356 s~~v~~~e~g--~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 356 SILVSPEEQG--KVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred Hhhccccccc--chhhHHHHHHHHhhhhhHHHHHHHH
Confidence 7788889999 8999999999999999988776553
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-11 Score=114.54 Aligned_cols=154 Identities=14% Similarity=0.065 Sum_probs=96.5
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHH
Q 011925 243 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYY 320 (475)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~ 320 (475)
..+++.+++...+++...+...+.....+++.-++++ .+..+...|........+-++.-++..+ +.+|. -+++
T Consensus 364 ~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~k---lI~kiGHv~v~ 439 (618)
T KOG3762|consen 364 VGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFK---LIEKIGHVNVM 439 (618)
T ss_pred HHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHH---HHHHhccccee
Confidence 3356777664444444444444555555555444544 4555544454444444444444444443 34444 5677
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHH-----HHHHHHHHHH
Q 011925 321 SAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTL-----SFLDKMSCGI 395 (475)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-----~~~~~ig~~i 395 (475)
.+++....+-++.+..+. |+|.++.+-++.|+..+.++..+.++.+...|++.+. ...++. +.+..+|+.+
T Consensus 440 ~lgLa~~~~Rf~~~S~L~--n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~a--t~Q~l~~g~f~GlG~g~GslI 515 (618)
T KOG3762|consen 440 YLGLACNVGRFLYYSYLQ--NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRA--TAQGLLQGIFHGLGKGLGSLI 515 (618)
T ss_pred eehhhHHHHHHHHHHHhc--CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchH--HHHHHHHHHhcccCcchhhhh
Confidence 777777777666666655 7888888899999999999999999999998888877 444432 3444566666
Q ss_pred HHHHHHHhc
Q 011925 396 AVYVLQSYQ 404 (475)
Q Consensus 396 g~~l~~~~~ 404 (475)
|+.+...++
T Consensus 516 GG~~v~~fg 524 (618)
T KOG3762|consen 516 GGFVVERFG 524 (618)
T ss_pred hhhhheeeh
Confidence 666665554
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=117.41 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=120.1
Q ss_pred cceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhc----cCCcchhHHHHHHH
Q 011925 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVL 99 (475)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr----~Grr~~~l~~~~~~ 99 (475)
++.+..+...++.++.+..-.+|+++|++++|++....+.+....++...+.||+.|..+|| ||||||++..+.+.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 66777888889999999999999999999999999999999999999999999999999996 99999999999988
Q ss_pred HHHHHHHhcCCccCC---ccCCccch---hhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHH
Q 011925 100 VAVSFSSVFGGCMPC---RILSTSTL---KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173 (475)
Q Consensus 100 ~~~~~~~~~~~~~p~---~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~ 173 (475)
..++..++-. .+- .+.+.... ......+.+-.-+..+..-..+.|.-++..|+..+++|+.+++++...+..
T Consensus 112 i~~~l~Lig~--aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 112 IAVSLFLIGY--AADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHhhhhh--HhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHH
Confidence 8888764431 110 01111111 111122222112566777678889999999999876666658888888888
Q ss_pred HHHHHHHHHH
Q 011925 174 VANLSLYAIA 183 (475)
Q Consensus 174 ~g~~~~~~~~ 183 (475)
+|+.++-.++
T Consensus 190 vGnvLGY~~g 199 (498)
T KOG0637|consen 190 VGNVLGYALG 199 (498)
T ss_pred hcceeeeecc
Confidence 8888765544
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=113.91 Aligned_cols=188 Identities=12% Similarity=-0.028 Sum_probs=126.9
Q ss_pred ehccccchhHHHHHHHHHHHHHHHHHHcCCC--------hhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHH
Q 011925 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLS--------PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (475)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s--------~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~ 98 (475)
..+.+..+...........+++.|.++.|.+ ....|.+.++..+...+..++.|+++||+||||. +..+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-l~~~~~ 289 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-MLLSLV 289 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHH
Confidence 3444555555554555667788888876644 4677999999999999999999999999999887 455555
Q ss_pred HHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHH-HHHHHHHH
Q 011925 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANL 177 (475)
Q Consensus 99 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~-~~~~~g~~ 177 (475)
..++....... + .......+... +...+.+++.+...+....++.+..+ +++|++..++.+ ....+|..
T Consensus 290 ~~~v~~~l~~~---~---~~~~~~~~~l~---l~~~l~g~~~~~~~~~~~~~i~~~~p-~~~~g~~~g~~~~~~~~lg~~ 359 (418)
T TIGR00889 290 AWALRFGFFAY---G---DPEYFGYALLF---LSMIVYGCAFDFFNISGSVFVEKEVP-VHIRASAQGLFTLMCNGFGSL 359 (418)
T ss_pred HHHHHHHHHHH---c---CcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhhHHH
Confidence 55555432221 0 00110111111 11225666666666666777888876 789999999986 56778999
Q ss_pred HHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 011925 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (475)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 229 (475)
+++.+++.+.+..+.. ...+|+..+.+.+++.+++.++.++..||++.
T Consensus 360 iGp~l~G~l~~~~g~~----~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 360 LGYILSGVMVEKMFAY----GTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHhccc----cCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9998888887654210 11479988888877777777777777788643
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=107.47 Aligned_cols=171 Identities=13% Similarity=0.061 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccC
Q 011925 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (475)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p 113 (475)
+.....+.....++|.|+++.|.++.+.|...++..+...++.++.|++.||+||||.. ..+..+..++..+... .|
T Consensus 215 ~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~-~~~~~l~~~~~~~~~~--~~ 291 (393)
T PRK09705 215 GLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL-MLALVLQLVGFCGFIW--LP 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHHH--cc
Confidence 33445555667789999988899999999999999999999999999999999998874 4444444444433221 12
Q ss_pred CccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 011925 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (475)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 193 (475)
.+ ... .... +.+++.+...+...+...+..+++++|++..+..+....++..+++.+.+.+....+
T Consensus 292 ----~~--~~~--~~~~----l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-- 357 (393)
T PRK09705 292 ----LQ--LPV--LWAM----VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-- 357 (393)
T ss_pred ----ch--HHH--HHHH----HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 11 111 1111 334444444444444555555556788999998888888888888887777765421
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011925 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (475)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~ 228 (475)
+|...+.+.+..+++.........+|++
T Consensus 358 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 358 -------NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2555555554444444444455667754
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.1e-10 Score=112.05 Aligned_cols=178 Identities=7% Similarity=-0.059 Sum_probs=102.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHh
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~ 107 (475)
..+..+...........++|.|+++. |+|..+.++..++..+...++.++.|+++||+||||..+............+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~ 342 (467)
T PRK09556 263 LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGV 342 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHH
Confidence 33344444444445667899999887 99999999999999999999999999999999998874433222221111111
Q ss_pred cCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHH-HHHHHHHHHHHH
Q 011925 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAIAFIV 186 (475)
Q Consensus 108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~-g~~~~~~~~~~l 186 (475)
+ + . ..+.....+... +.+........+......|..| +++|+.+.++.+....+ |..+++.+.+.+
T Consensus 343 ~----~--~--~~~~~~~~~~~~----~~G~~~~~~~~~~~~~~~~~~p-~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i 409 (467)
T PRK09556 343 Y----Q--H--ATSEYMYLASLF----ALGFLVFGPQLLIGVAAVGFVP-KKAIGVANGIKGTFAYLFGDSFAKVGLGMI 409 (467)
T ss_pred H----H--h--cCcHHHHHHHHH----HHHHHHhhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence 1 0 0 111211112111 2332211111222244557665 77899999998877665 556666665555
Q ss_pred HHhhccCCc---cchHHHHHHHHHHHHHHHHHHHHHH
Q 011925 187 FSVSTAKTH---ADLENQYRWIAYSSIFIGCCFVGIF 220 (475)
Q Consensus 187 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (475)
..-. +.+. +....+|+..+.+..+..++..+..
T Consensus 410 ~~~~-~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 410 ADPT-KNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred hccc-ccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 4300 0000 0003468888877766555544443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-09 Score=107.92 Aligned_cols=172 Identities=13% Similarity=0.076 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCC
Q 011925 36 NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (475)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~ 114 (475)
.+..+.....++|.|+++. |.+....+++.....+...+..|+.|+++||+|||+.++.........+..+...
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----- 336 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFIL----- 336 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3445556677999999876 9999888888888888899999999999999999987544333222222211110
Q ss_pred ccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 011925 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 194 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 194 (475)
.. ............ +.+++.+.......++.+++.| ++.|++..+..+....+++.+++.+.+.+...
T Consensus 337 -~~-~~~~~~~~~~~~----~~g~~~~~~~g~~~~~~~~~~p-~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~----- 404 (490)
T PRK10642 337 -IN-SNVIGLIFAGLL----MLAVILNCFTGVMASTLPAMFP-THIRYSALAAAFNISVLVAGLTPTLAAWLVES----- 404 (490)
T ss_pred -Hh-CCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 00 111111111111 2333333333344455667776 77899887764333344444555554444321
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 011925 195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (475)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 229 (475)
..+|+..++...+.+++..+..+ ..||++.
T Consensus 405 ----~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~ 434 (490)
T PRK10642 405 ----TQNLMMPAYYLMVVAVIGLITGV-TMKETAN 434 (490)
T ss_pred ----hCCchHHHHHHHHHHHHHHHHHH-HhccccC
Confidence 12355555444444544444433 4577543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-08 Score=95.66 Aligned_cols=254 Identities=14% Similarity=0.039 Sum_probs=134.3
Q ss_pred ceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHH
Q 011925 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~ 104 (475)
-...|.+.. ....+-++|+=..|++.|++..+++.+...+....++..++.|.++||+||||.-++.+ ++..++.
T Consensus 39 yl~vY~La~----~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~c-ily~~sc 113 (354)
T PF05631_consen 39 YLLVYLLAM----AADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFC-ILYSLSC 113 (354)
T ss_pred HHHHHHHHH----HHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH-HHHHHHH
Confidence 345566663 33345566665556656999999999999999999999999999999999999755443 3444443
Q ss_pred HHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCcc-chhhHhhHHHHH----HHHHHHHH
Q 011925 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAF----TMVANLSL 179 (475)
Q Consensus 105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~-~R~~~~~~~~~~----~~~g~~~~ 179 (475)
+.-. .... ..++.-++ +.|++.+....+..++...-..+.+ ++.......... +.+-.+.+
T Consensus 114 l~k~----------~~~~-~~L~~GRv---lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~a 179 (354)
T PF05631_consen 114 LTKH----------SSNY-PVLLLGRV---LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGA 179 (354)
T ss_pred HHHh----------cccc-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHH
Confidence 3222 1122 22333332 5667777666666555432221111 111122111111 11222333
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc--CCCcchHHHHHHHHhchhHHHHHH
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVAL 257 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 257 (475)
+.++-.+.+..+ .+-..+|....++.++..++....-+|+..++.+ +..++.++.++.+.+||+.+.+.+
T Consensus 180 Gv~a~~l~~~~~--------~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~ 251 (354)
T PF05631_consen 180 GVVANVLADWFG--------FGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGL 251 (354)
T ss_pred hHHHHHHHHHhC--------CCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHH
Confidence 333333332221 1223444444444444444433333454322111 112345566778888898777776
Q ss_pred HHHHHHHHHHhh-hHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHH
Q 011925 258 VYMLTRLVVNVS-QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQE 308 (475)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (475)
...+.-...+.+ ..|-|..-.++.+.+ .|++..-.++..++|+-+..+
T Consensus 252 ~qslFE~smy~FVflWtPaL~~~~~~~P---~GlIFssFM~a~MlGS~lf~~ 300 (354)
T PF05631_consen 252 IQSLFEGSMYLFVFLWTPALDPDDEELP---LGLIFSSFMVAMMLGSSLFSR 300 (354)
T ss_pred HHHHHHHHHHHheeeeeceecCCCCCCC---chHHHHHHHHHHHHHHHHHHH
Confidence 666655444433 345555543222222 356666666777777766543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-10 Score=109.39 Aligned_cols=165 Identities=16% Similarity=0.095 Sum_probs=108.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
+....+...........+.+.|.++.|.+..+.+.+.++..+...+..++.|+++||+||||.. ..+.+...++..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~ 288 (377)
T TIGR00890 210 LYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTM-SIVFGISAVGMAAML 288 (377)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHH
Confidence 3333333334444445566777777799999999999999999999999999999999998874 444444444443332
Q ss_pred CCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011925 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (475)
Q Consensus 109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (475)
. .+ ........... .+.+.+++.......++..|..+ +++|++..++.+....+|..+++.+.+.+.+
T Consensus 289 ~--~~-----~~~~~~~~~~~----~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 289 F--IP-----MLNDVLFLATV----ALVFFTWGGTISLFPSLVSDIFG-PANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred H--cc-----cchhHHHHHHH----HHHHHHhccchhccHHHHHHHhh-hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11 11111111111 13455555555555667778776 7889999999988888888888877766653
Q ss_pred hhccCCccchHHHHHHHHHHHHHHHHHH
Q 011925 189 VSTAKTHADLENQYRWIAYSSIFIGCCF 216 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 216 (475)
..+|++.+.+.+++.++.
T Consensus 357 ----------~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 357 ----------EIGFEYTFIVTGAFALTS 374 (377)
T ss_pred ----------hhchhhHHHHHHHHHHHh
Confidence 457888887766655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-09 Score=106.54 Aligned_cols=151 Identities=11% Similarity=-0.015 Sum_probs=103.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHh
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~ 107 (475)
.....+...........+.|+|+++. |.++.+.+++.....+...+..++.|+++||+||||.++ .+....++...++
T Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~-~~~~~~~~~~~~~ 344 (471)
T PRK10504 266 GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLV-ATTLGLALVSLLF 344 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH-HHHHHHHHHHHHH
Confidence 33334444455555556778888875 999999999999999999899999999999999998754 4444444443322
Q ss_pred cCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 011925 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (475)
Q Consensus 108 ~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (475)
.. .+ .....+....... +.+++.+....+.+++..+..+ +++|+...+..+....+|..+++.+.+.+.
T Consensus 345 ~~--~~----~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 345 ML--VA----LLGWYYLLPFVLF----LQGMVNSTRFSSMNTLTLKDLP-DNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred Hh--cc----ccccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCC-HHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 1111111111121 4556677677777777777766 678999999999999999999999888887
Q ss_pred Hhhc
Q 011925 188 SVST 191 (475)
Q Consensus 188 ~~~~ 191 (475)
+..+
T Consensus 414 ~~~g 417 (471)
T PRK10504 414 GLFG 417 (471)
T ss_pred HHhh
Confidence 6653
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-09 Score=103.70 Aligned_cols=155 Identities=13% Similarity=0.086 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccC
Q 011925 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (475)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~ 117 (475)
.......+++|.|+++.|.+..+.|.+.++..+...+.+++.|++.||+|||+. +..+.....++..... +
T Consensus 214 ~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~-l~~~~~~~~~~~~~~~----~---- 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV-LRVQVFVVILGSIAML----S---- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH-HHHHHHHHHHHHHHHh----h----
Confidence 334455678899998889999999999999999999999999999999999886 4444444444433221 0
Q ss_pred CccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 011925 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (475)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (475)
. . ....... +.+.+.....+...++..+..+ +++++...+.......+|..+++.+.+.+.+
T Consensus 285 -~--~-~~~~~~~----l~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~--------- 346 (381)
T PRK03633 285 -Q--A-AMAPALF----ILGAAGFTLYPVAMAWACEKVE-HHELVAMNQALLLSYTVGSLLGPSFTAMLMQ--------- 346 (381)
T ss_pred -h--H-HHHHHHH----HHHHHHHhHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 0 0 1011111 3343333444556666677664 4555666666666778888888888877754
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 011925 198 LENQYRWIAYSSIFIGCCFVGIF 220 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~~ 220 (475)
..+|++.+.+.+.+.++..+..
T Consensus 347 -~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 347 -NYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred -HhCccHHHHHHHHHHHHHHHHH
Confidence 3467777777766665554444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-08 Score=101.60 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccC
Q 011925 39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (475)
Q Consensus 39 ~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~ 117 (475)
.......++|.|+++. |.++.+.|++.++..+...+..++.|+++||+||||... .+............ ..
T Consensus 231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~-~~~~~~~~~~~~~~-------~~ 302 (393)
T PRK15011 231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMR-VAAVAGVCFYAGML-------MA 302 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHH-------HH
Confidence 3344556788899886 999999999988888888888999999999999998643 34333333322211 01
Q ss_pred CccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 011925 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (475)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (475)
.+.+.. ..... +.+++.+.......+...|..+ ++|+++.+..+....+|..+++.+++.+.+
T Consensus 303 --~~~~~~-l~~~~---l~~~~~g~~~~~~~~~~~~~~p--~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~--------- 365 (393)
T PRK15011 303 --HSPAIL-LGLQL---LNAIYIGILGGIGMLYFQDLMP--GQAGSATTLYTNTSRVGWIIAGSLAGIVAE--------- 365 (393)
T ss_pred --hhHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 111111 11111 2233333333333444556554 468888888877788888888888877653
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011925 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~e 226 (475)
..+|+..+.+..++.++..+..+ ..||
T Consensus 366 -~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 366 -IWNYHAVFWFALVMIIATLFCLL-RIKD 392 (393)
T ss_pred -HhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 34788888776666655554443 3444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=101.29 Aligned_cols=148 Identities=5% Similarity=-0.020 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHH
Q 011925 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 329 (475)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~ 329 (475)
+++.+.+..++...+......++|.|++++.|.+..+.++......++.++..+..+++ +|+++ |+.+.++.....+
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~--k~~~~~~~~~~~~ 85 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDK--KRYMLLAITAFAS 85 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--chhHHHHHHHHHH
Confidence 35666667777777888888999999999999999888888777777777777776665 44444 6677777776666
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 330 CGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.+.+.+.+ +.+..++...+.+.+.+...+.......+..++++++ ..+++.....++|..+|+.+.+.+.
T Consensus 86 ~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 86 GFIAIPLVN--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKT--KIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555533 5555444455666666666666667777777777788 7788888888888888887776653
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-09 Score=106.38 Aligned_cols=172 Identities=9% Similarity=-0.104 Sum_probs=106.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHc----CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHH
Q 011925 30 GSGHMLNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (475)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~----g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~ 105 (475)
.+..+.....+......+|.|+.+. +.+..+.|.+.++..+...+..++.|+++||+||||.. ..+.++.++...
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~l~~~~~~ 307 (420)
T PRK09528 229 VLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL-LLAGTIMAVRII 307 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh-HHHHHHHHHHHH
Confidence 3333334444444445567666653 56778899999999999999999999999999999974 444444444433
Q ss_pred HhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhH-HHHHHHHHHHHHHHHHH
Q 011925 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAF 184 (475)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~ 184 (475)
+... . .+.+....... +.+++.+........++.+..+ ++.|+...+. .+....+|.++++.+.+
T Consensus 308 l~~~-------~--~~~~~~~~~~~----l~g~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~lg~~ig~~~~G 373 (420)
T PRK09528 308 GSGF-------A--TGPLEVSILKL----LHAFEVPFLLVGVFKYITLNFD-VRLSATIYLVGFQFAKQLGAVFLSTLAG 373 (420)
T ss_pred HHHh-------c--ccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcC-ccceeeeeeehHHHHHHHHHHHHHHHHH
Confidence 3321 1 12222222222 4555665555555566677665 5566655433 34556677777776666
Q ss_pred HHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011925 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (475)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e 226 (475)
.+.+ ..||+..+.+.+++.++..++.++..++
T Consensus 374 ~l~~----------~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 374 NLYD----------SIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHH----------hhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6653 3478888888777766665555555554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-09 Score=103.36 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=109.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
..+..+...........++|.|+++.|.+..+.+.+.+...+...+..++.|+++||+||||+....+.+..++....+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~ 306 (402)
T TIGR00897 227 GGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALY 306 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 33444444455556667899898777999999999999999999999999999999999988743333332322221111
Q ss_pred CCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011925 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (475)
Q Consensus 109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (475)
. .|. .. ..+.+...+... +.+.+.+.. .+..+...+.. +++|++..++.+....+|..+++.+.+.+.+
T Consensus 307 ~--~~~-~~-~~~~~~~~~~~~----~~G~~~~~~-~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~ 375 (402)
T TIGR00897 307 Y--IPQ-HF-GHSFAVALIIAI----ALGIFLAGY-VPLAAVFPTLA--PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG 375 (402)
T ss_pred H--HHH-cc-CCcHHHHHHHHH----HHHHHHHHH-HHHHHHHHhhC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 110 00 111211112222 344444433 34445555543 5689999999999999999888888877764
Q ss_pred hhccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (475)
..||+..+++.+++.++...+.+
T Consensus 376 ----------~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 376 ----------FFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred ----------hcchHHHHHHHHHHHHHHHHHHH
Confidence 34677777777666655554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=90.76 Aligned_cols=136 Identities=16% Similarity=0.038 Sum_probs=91.4
Q ss_pred HHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHh
Q 011925 66 LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV 145 (475)
Q Consensus 66 ~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (475)
+...+...+..|+.|++.||+||||.++ .+.....+....... . .+.+...... .+.+.+.+...+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~-~~~~~~~~~~~~~~~-------~--~~~~~~~~~~----~~~g~~~~~~~~ 70 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLL-VGLFIFVLSTAMFAL-------S--SNITVLIIAR----FLQGFGAAFALV 70 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHH-HHHHHHHHHHHHHHH-------h--ccHHHHHHHH----HHHHHHHHHHHH
Confidence 3455677788999999999999999854 444444444332221 0 1122222222 256677777777
Q ss_pred hhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011925 146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE 225 (475)
Q Consensus 146 ~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 225 (475)
...++..|..+ +++|++..+..+....+|..+++.+.+.+.+ ..+|++.+.+.+.+.++..+..++..|
T Consensus 71 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 71 AGAALIADIYP-PEERGVALGLMSAGIALGPLLGPPLGGVLAQ----------FLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hHHHHHHHHCC-hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------ccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 77888888876 6789999999999888998888877766542 347888887776666666655555555
Q ss_pred c
Q 011925 226 E 226 (475)
Q Consensus 226 e 226 (475)
|
T Consensus 140 ~ 140 (141)
T TIGR00880 140 E 140 (141)
T ss_pred C
Confidence 5
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=107.21 Aligned_cols=146 Identities=16% Similarity=0.043 Sum_probs=96.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCC
Q 011925 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (475)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~ 110 (475)
..+...........++|.|+++. |.+..+.+.+..+..+...+..++.|+++||+||||.++..+.+....+......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~- 305 (394)
T TIGR00883 227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA- 305 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-
Confidence 33444555566678899999776 9999999999999999999999999999999999987554444333333111110
Q ss_pred ccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHH-HHHHHHHHHHHHHHHHHHHH
Q 011925 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFS 188 (475)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~~~l~~ 188 (475)
.......+...... .+.+.+.+....+..++..|..| +++|++..+.. .....+|..+++.+.+.+.+
T Consensus 306 -----~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 306 -----LLDSGSFTLFFFLV----LGLALIGGMYTGPMGSFLPELFP-TEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred -----HhcCCchHHHHHHH----HHHHHHHHHHhhhHHHHHHHhCC-ccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 00011111111111 24556666677778888999887 67788887764 34455677677777766654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-09 Score=103.39 Aligned_cols=160 Identities=16% Similarity=0.074 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCcc
Q 011925 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~ 116 (475)
.........+++.|+.+.|.+ ..++..+...+...+..++.|++.||+||||. +..+....+++......
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~~~~~------- 298 (399)
T PRK05122 229 SIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRV-AIVSLLVEILGLLLLWL------- 298 (399)
T ss_pred HHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH-------
Confidence 444555667888888877663 34666677788888899999999999999886 44444444554433321
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 011925 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (475)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 196 (475)
. .+.+...+.. .+.+++.+...+.......+..+ +++|++..++.+....+|..+++.+.+.+.+
T Consensus 299 ~--~~~~~~~~~~----~l~G~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-------- 363 (399)
T PRK05122 299 A--PSPWMALIGA----ALTGFGFSLVFPALGVEAVKRVP-PQNRGAALGAYSVFLDLSLGITGPLAGLVAS-------- 363 (399)
T ss_pred h--ccHHHHHHHH----HHHHHhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 1 1122211111 25666666655555555666664 7889999999888888887777666665543
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011925 197 DLENQYRWIAYSSIFIGCCFVGIFLSR 223 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~i~~~~~~~~ 223 (475)
..+|+..+++.+.+.++..++.++.
T Consensus 364 --~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 364 --WFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred --HcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478888877766666665554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-09 Score=103.99 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccC
Q 011925 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (475)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~ 117 (475)
........++|.|+++.|.+..+.+.+.+...+...+..++.|+++||+||||... .+.+...++...... .+
T Consensus 234 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~--~~---- 306 (406)
T PRK11551 234 IVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVL-LIYAGILASLAALAA--AP---- 306 (406)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHh--cC----
Confidence 34445566789999888999999999999999999999999999999999988743 333333333322221 11
Q ss_pred CccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 011925 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (475)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (475)
+.+...+.. .+.+.+.+..+....++..+..+ +++|++..++.+....+|..+++.+.+.+...
T Consensus 307 ---~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~-------- 370 (406)
T PRK11551 307 ---SFAGMLLAG----FAAGLFVVGGQSVLYALAPLFYP-TQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL-------- 370 (406)
T ss_pred ---cHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHcc-hhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc--------
Confidence 111111111 24555555555666777888876 78899999999998888888888877776532
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 198 LENQYRWIAYSSIFIGCCFVGIFL 221 (475)
Q Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~~~ 221 (475)
..+|...++......++..+..+
T Consensus 371 -~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 371 -GRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHH
Confidence 12455555444444444444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-09 Score=104.72 Aligned_cols=162 Identities=10% Similarity=0.017 Sum_probs=112.3
Q ss_pred chHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhh
Q 011925 238 HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL 316 (475)
Q Consensus 238 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~ 316 (475)
+...+++.+.|||.++.+.+..++..+........+|.+.++ .+.++.+.+++.....++.+++.++.+++ +|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~-- 81 (417)
T PRK10489 5 SWLLDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDR-- 81 (417)
T ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCC--
Confidence 344566667789998888777777777777778888888765 46677778888888788888888887765 44444
Q ss_pred HHHHHHHHHHHHHHHHHHh---hcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHH
Q 011925 317 KAYYSAGGVLWVFCGAGIL---ILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 393 (475)
Q Consensus 317 k~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~ 393 (475)
|+.+..+..+..++..... +...++.+.+++..++.|++.+...+.......+..++++++ ...++......+|.
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 159 (417)
T PRK10489 82 KKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLM--QAGAITMLTVRLGS 159 (417)
T ss_pred ceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHH--HHHHHHHHHHhHHH
Confidence 5555555544444333221 222335555566677888888877777777777777787777 77788777888888
Q ss_pred HHHHHHHHHhc
Q 011925 394 GIAVYVLQSYQ 404 (475)
Q Consensus 394 ~ig~~l~~~~~ 404 (475)
.+|+.+.+.+.
T Consensus 160 ~~g~~l~g~l~ 170 (417)
T PRK10489 160 VISPALGGLLI 170 (417)
T ss_pred HhHHHHHHHHH
Confidence 88887776654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-09 Score=103.42 Aligned_cols=160 Identities=12% Similarity=0.022 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCc
Q 011925 41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (475)
Q Consensus 41 ~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 119 (475)
.....++++|+++. |.|+.+.+++.++..+...+..++.|+++||+|||+. +. +............ + . .
T Consensus 222 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~-~~~~~~~~~~~l~----~--~--~ 291 (390)
T PRK03545 222 FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LI-AIALLLVCLLLLL----P--A--A 291 (390)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HH-HHHHHHHHHHHHH----H--H--h
Confidence 33456788888887 9999999999999999999999999999999998764 33 3332333322211 0 0 0
Q ss_pred cchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchH
Q 011925 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
.+.+...+.. .+.+++.....+...+.+.+.. +++|+++.+..+....+|..+++.+.+.+.+ .
T Consensus 292 ~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------~ 355 (390)
T PRK03545 292 NSEWHLSVLS----IFWGIAIMCIGLAMQVKVLKLA--PDATDVAMALFSGIFNIGIGAGALLGNQVSL----------H 355 (390)
T ss_pred chHHHHHHHH----HHHHHHHhcchHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------c
Confidence 1111111111 1455555444444555565654 3578888888888888888888877777653 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011925 200 NQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~~~~~~e 226 (475)
.+++..+.+.+.+.++..++.++..+.
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
T PRK03545 356 LGLSSIGYVGAALALAALVWSILIFRR 382 (390)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHccc
Confidence 578888877777776666666555544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.8e-09 Score=103.14 Aligned_cols=176 Identities=10% Similarity=-0.017 Sum_probs=106.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhcc--CCcchhHHHHHHHHHHHHHH
Q 011925 30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVSFSS 106 (475)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~--Grr~~~l~~~~~~~~~~~~~ 106 (475)
.+..+........+.+++|.|+++. |.+..+.+...+...+...++.++.|+++||+ +||+.......+........
T Consensus 249 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~ 328 (434)
T PRK11663 249 SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGS 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 3333344444555667899999776 99999999999999999999999999999998 33343222211111112111
Q ss_pred hcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011925 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (475)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (475)
... .| ..+.......+. ..+.+.............+..+ +++|++..++.+....+|..+++.+.+.+
T Consensus 329 ~~~--~~-----~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~p~~~g~l 396 (434)
T PRK11663 329 LWL--MP-----FASYVMQAACFF----TIGFFVFGPQMLIGMAAAECSH-KEAAGAATGFVGLFAYLGAALSGYPLAKV 396 (434)
T ss_pred HHH--cc-----cccHHHHHHHHH----HHHHHHhhHHHHHHHHHHhccc-HhhHHhHHHHHHHHHHHHHHHhcccHHHH
Confidence 110 12 111111111111 1222111111112233456554 78899999999999999998888777776
Q ss_pred HHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011925 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~ 227 (475)
.+ ..+|+..++..++++++..+..++..|++
T Consensus 397 ~~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK11663 397 LE----------IWHWTGFFVVISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred HH----------hcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 53 34788888887777766666555555553
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=103.30 Aligned_cols=151 Identities=11% Similarity=0.074 Sum_probs=111.6
Q ss_pred hch-hHHHHHHHHHHHHHHHHhhhHHHHHHHhhh--cccccchhhhHhHHHHHHHHHHHHHHHHH-HH-HhhhhHHHHHH
Q 011925 248 KKI-LYYQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSA 322 (475)
Q Consensus 248 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~r~k~~~~~ 322 (475)
++| .++.+.+..++..+.++....++|.|++++ +|+++.+++.......++..++.++.+++ +| +++ |+.+.+
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~--~~~l~~ 84 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT--KKTMVL 84 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcch--HHHHHH
Confidence 443 345555666777788889999999999887 89998888888777777788888887775 44 344 778888
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCC---CccchhhhhHHHHHHHHHHHHHHHH
Q 011925 323 GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGED---LSGCAFVCGTLSFLDKMSCGIAVYV 399 (475)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~---~~G~~~~~~~~~~~~~ig~~ig~~l 399 (475)
+..+..++...+.+.+ +.+.+++...+.|+|.+...+....+..+.++++ +++ ..+++.....++|..+|+.+
T Consensus 85 ~~~~~~~g~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~~~~niG~~ig~~l 160 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRD--GGFTLFYMSINIGSFISPLL 160 (475)
T ss_pred HHHHHHHHHHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccccc--ceehhHHHHHHHHHHHHHHH
Confidence 8888888776665533 4445556667888998888777777766665543 244 56788888899999999888
Q ss_pred HHHhc
Q 011925 400 LQSYQ 404 (475)
Q Consensus 400 ~~~~~ 404 (475)
.+.+.
T Consensus 161 ~g~l~ 165 (475)
T TIGR00924 161 AGVIA 165 (475)
T ss_pred HHHHH
Confidence 87765
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-11 Score=121.83 Aligned_cols=273 Identities=10% Similarity=0.052 Sum_probs=1.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
+++..+...+..+.+...+....++++++.++.|++.+.+-+...+..++..++.+|. +|..|+-.|.++++++.++..
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHh
Confidence 4444444444455555666666667799999999999999999999999999999884 556688888888888865443
Q ss_pred CCccCCccCC---------------------------------------ccchhhhhHHHHHHHHHHHHHHhHhHhhhhh
Q 011925 109 GGCMPCRILS---------------------------------------TSTLKVETISYCVFAAIFNVGWAATQVAHMS 149 (475)
Q Consensus 109 ~~~~p~~~~~---------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 149 (475)
+|-...+ ...... .+..+..+.++-.+....|.++
T Consensus 87 ---lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~~gq~l~GiG~~pl~t 160 (539)
T PF03137_consen 87 ---LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLS---GYFYVFILGQLLIGIGATPLYT 160 (539)
T ss_dssp -----------------------------------------------------------------------SSS------
T ss_pred ---ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccch---HHHHHHHHHHHHHhccccCCcc
Confidence 3420000 000000 0111111333333444444444
Q ss_pred h----hcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCc----------cchHH--HHHHHHHHHHHHH
Q 011925 150 M----VNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH----------ADLEN--QYRWIAYSSIFIG 213 (475)
Q Consensus 150 l----~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~ 213 (475)
+ +-|..+ +++-+.+.++.++...+|.++|-++++.++....+... .|.+| .|-.-|++.+.+.
T Consensus 161 LG~tYiDDnv~-~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 161 LGITYIDDNVS-KKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeeccccc-cccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 4 444433 45556677888888888888888887777654322110 11111 2444455555555
Q ss_pred HHHHHHHhhcccccccc---------cccC-----------CC---------cchHHHHHHHHhchhHHHHHHHHHHHHH
Q 011925 214 CCFVGIFLSRTEEPRLK---------MGLR-----------GN---------SHARISWAYWFKKILYYQVALVYMLTRL 264 (475)
Q Consensus 214 ~i~~~~~~~~~~e~~~~---------~~~~-----------~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 264 (475)
++..+..+.+.|+-+.. ++++ ++ ++....+++++|||.+....+...+...
T Consensus 240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~ 319 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44444433332211110 0000 00 1122345778999998888888888888
Q ss_pred HHHhhhHHHHHHHhhhcccccchhhhHhHHH-HHHHHHHHHHHHHH
Q 011925 265 VVNVSQAYLAFYVINDLRMGQSAKALVPAII-YICSFIVSILLQEM 309 (475)
Q Consensus 265 ~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 309 (475)
...++.+|.|+|++.+.+.++..++++.... ..+.++|.++.|.+
T Consensus 320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~i 365 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYI 365 (539)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEE
Confidence 8889999999999999999988776554333 23444555555553
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=104.13 Aligned_cols=173 Identities=11% Similarity=0.001 Sum_probs=110.3
Q ss_pred ceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHH
Q 011925 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~ 103 (475)
+...+.+..+...........++|.|+++. |.+..+.+++.++..+...+..++.|+++||+|||+..+..........
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 295 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA 295 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 344455666666677777888999999887 9999999999999999999999999999999999872222111111111
Q ss_pred ----HHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHH
Q 011925 104 ----FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 104 ----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
....+. .. .....+...... .+...+.+ ..+...++..+..+ +++|++..++.+....+|..++
T Consensus 296 ~~~~~~~~~~------~~-~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~ 363 (399)
T TIGR00893 296 GLVLSLLMFA------TN-YVNIPYAALALV---ALGFFGLG-AGAIGWALISDNAP-GNIAGLTGGLINSLGNLGGIVG 363 (399)
T ss_pred HHHHHHHHHH------hc-cchhHHHHHHHH---HHHHhchh-hhhHHHHHHHhhcC-hhHHHHHHHHHHHHHHHhhhhh
Confidence 111110 00 011111111111 12222222 45666778888876 7889999999999888888888
Q ss_pred HHHHHHHHHhhccCCccchHHH-HHHHHHHHHHHHHHHHHH
Q 011925 180 YAIAFIVFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGI 219 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 219 (475)
+.+.+.+.+. .+ |+..+.+.+.+.++..+.
T Consensus 364 ~~i~g~l~~~----------~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 364 PIVIGAIAAT----------TGSFAGALMVVAALALIGALS 394 (399)
T ss_pred hHHhhhhccC----------CCchhHHHHHHHHHHHHHHHH
Confidence 7777666432 24 777776665555554443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=99.61 Aligned_cols=155 Identities=12% Similarity=0.041 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCC
Q 011925 40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS 118 (475)
Q Consensus 40 ~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~ 118 (475)
......++|.|+++. |.++.+.|++.....+......++.|++.||+||||... .+.+...+...... .
T Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~-~~~~~~~~~~~~~~-------~-- 284 (375)
T TIGR00899 215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLML-LAALAGVAFYTGLA-------A-- 284 (375)
T ss_pred HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHH-HHHHHHHHHHHHHH-------H--
Confidence 344456778888776 999999999998888888888999999999999998743 33333333222111 0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccch
Q 011925 119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (475)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (475)
..+.+.. .... .+.+.+.+.......+...+..+ ++|++..+..+....+|..+++.+.+.+.+
T Consensus 285 ~~~~~~~-~~~~---~~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~---------- 348 (375)
T TIGR00899 285 DNSLWAL-LMLQ---LLNAIFIGILAGIGMLYFQDLMP--GRAGAATTLYTNTGRVGWIIAGSVGGILAE---------- 348 (375)
T ss_pred HHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 0112211 1111 14455555555555566677664 456688888888888888888877776653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011925 199 ENQYRWIAYSSIFIGCCFVGIF 220 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~i~~~~~ 220 (475)
..+|+..+++.+++.++..++.
T Consensus 349 ~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 349 RWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred hccchhHHHHHHHHHHHHHHHH
Confidence 3468887777766665555444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=100.83 Aligned_cols=161 Identities=7% Similarity=-0.024 Sum_probs=99.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
.+..+...........++|.|+++. |+|+.+.+.+.+...+...+..++.|+++||+||||..+.. .....+...+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~-~~~~~~~~~~~~ 289 (394)
T PRK03699 211 AIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVL-AGLALVLMYLFV 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH-HHHHHHHHHHHH
Confidence 3333444444456678999999887 99999999999999999999999999999999999875433 333333322221
Q ss_pred CCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011925 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (475)
Q Consensus 109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (475)
. .+ +..+...... ..+.+.+.......+...+..+ +++++..+.......+|..+++.+.+.+.+
T Consensus 290 ~-------~~--~~~~~~~~~~----~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~ 354 (394)
T PRK03699 290 N-------TD--DPSHLLYAIL----GLGFFSSAIYTTIITLGSQQTK--VASPKLVNFILTCGTIGTMLTFVVTSPIVA 354 (394)
T ss_pred H-------cC--CchHHHHHHH----HHHHHHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 0 11 1111111111 3444444343334444555443 345566677767777888888877777754
Q ss_pred hhccCCccchHHHHHHHHHHHHHHHHHH
Q 011925 189 VSTAKTHADLENQYRWIAYSSIFIGCCF 216 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 216 (475)
. .+++..++..+++.+++
T Consensus 355 ~----------~g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 355 H----------FGLQAALLTANGLYAVV 372 (394)
T ss_pred H----------hCchhhhhhhHHHHHHH
Confidence 2 35666666555544444
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=102.96 Aligned_cols=171 Identities=9% Similarity=-0.042 Sum_probs=98.4
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhcc--CCcchhHHHHHHHHHHHH
Q 011925 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVSF 104 (475)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~--Grr~~~l~~~~~~~~~~~ 104 (475)
...+..+...........++|.|+++. |.+..+.+.+..+..+...+..++.|+++||+ |||+........+..++.
T Consensus 257 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~ 336 (452)
T PRK11273 257 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 336 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 344444444445556678999999997 99999999999999999999999999999998 444432222222222222
Q ss_pred HHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHH-HHHHH
Q 011925 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS-LYAIA 183 (475)
Q Consensus 105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~-~~~~~ 183 (475)
..... .+ ........+... ..+.+.........++..+..+ +++|++..++.+....+|..+ ++.+.
T Consensus 337 ~~~~~--~~-----~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~g~~v~ 404 (452)
T PRK11273 337 IVYWL--NP-----AGNPTVDMACMI----VIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIV 404 (452)
T ss_pred HHHHH--hc-----ccChHHHHHHHH----HHHHHHHhHHHHHHHHHHHHcC-hhhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence 22110 11 111111111111 2222211111222334556665 678999999887776676543 56666
Q ss_pred HHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 011925 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (475)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (475)
+.+.. ..+|+..+.+.+..+++..+..
T Consensus 405 g~l~~----------~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 405 GYTVD----------FFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHHHH----------HhcchHHHHHHHHHHHHHHHHH
Confidence 55543 3468877776666555544443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=102.19 Aligned_cols=276 Identities=9% Similarity=0.052 Sum_probs=172.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
+++-.+.-.+..+.+.+.+...-+.++++..+.|++.+.+-+...+...++.+..-|.-| ..|+-.|.++++++.++..
T Consensus 102 l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~Hr-Pr~Ig~G~~~m~lgsll~a 180 (735)
T KOG3626|consen 102 LSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHR-PRWIGIGLVLMGLGSLLFA 180 (735)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCc-cceeeechhHHHHHHHHHh
Confidence 333333333333333333444444459999999999999999999999999999998765 4467778888877765544
Q ss_pred CCccCC-----------------ccC---------------------Cc----cchhhhhHHHHHHHHHHHHHHhHhHhh
Q 011925 109 GGCMPC-----------------RIL---------------------ST----STLKVETISYCVFAAIFNVGWAATQVA 146 (475)
Q Consensus 109 ~~~~p~-----------------~~~---------------------~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (475)
+|- ... .. ......++.+++--.+.|+|.+.....
T Consensus 181 ---lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 181 ---LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred ---ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 341 000 00 111112222322123445555444444
Q ss_pred hhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCC-------ccchHH--HHHHHHHHHHHHHHHHH
Q 011925 147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT-------HADLEN--QYRWIAYSSIFIGCCFV 217 (475)
Q Consensus 147 ~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~i~~ 217 (475)
-.+++-|... +++-..+.++.+....+|.++|-+++..+..+..+.+ ..|.+| .|..-|++.+.+.++..
T Consensus 258 GisYiDDnvk-~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 258 GISYIDDNVK-KKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCcccccccc-ccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 4444545443 4455677888888999999999888888887543321 122222 46677888877777777
Q ss_pred HHHhhccccccccc------------ccC----CC-------cchHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHH
Q 011925 218 GIFLSRTEEPRLKM------------GLR----GN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 274 (475)
Q Consensus 218 ~~~~~~~~e~~~~~------------~~~----~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (475)
+..+++.+|.+... +++ ++ ++..+.++++++||.+....+...+....+.++.+|+|
T Consensus 337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP 416 (735)
T KOG3626|consen 337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP 416 (735)
T ss_pred HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence 77666665533211 000 01 12345678899999988888888888889999999999
Q ss_pred HHHhhhcccccchhhhHhHHHHHH-HHHHHHHHHHH
Q 011925 275 FYVINDLRMGQSAKALVPAIIYIC-SFIVSILLQEM 309 (475)
Q Consensus 275 ~y~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 309 (475)
+|++++.|.++..+..+.....+. ..+|.++.|.+
T Consensus 417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~i 452 (735)
T KOG3626|consen 417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLI 452 (735)
T ss_pred HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhcccee
Confidence 999999999988776555443333 33444444543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=98.89 Aligned_cols=167 Identities=16% Similarity=0.166 Sum_probs=121.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcc-hhHHHHHHHHHHHHHH
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFK-IWHGAGSVLVAVSFSS 106 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~-~~l~~~~~~~~~~~~~ 106 (475)
+.+..+...........+.|.+.++. |.+..+.+.+..+..+...+..++.|++.||+|||+ . +..+.....++...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 258 (352)
T cd06174 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL-LLIGLLLAALGLLL 258 (352)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHH
Confidence 33344455556666777889999998 999999999999999999999999999999999988 6 44455555554433
Q ss_pred hcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011925 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (475)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (475)
... . .+.+...... .+.+.+.+...+...++..+..+ +++|++..+..+....+|..+++.+.+.+
T Consensus 259 ~~~-------~--~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~g~l 324 (352)
T cd06174 259 LAL-------A--PSLALLLVAL----LLLGFGLGFAFPALLTLASELAP-PEARGTASGLFNTFGSLGGALGPLLAGLL 324 (352)
T ss_pred HHH-------h--ccHHHHHHHH----HHHHHHHhccchhHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 0 1122222222 26777777777888888888876 68999999999999999998888777766
Q ss_pred HHhhccCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 011925 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (475)
.+ ..+|+..+.+.+++.++..++.
T Consensus 325 ~~----------~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 325 LD----------TGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred hc----------ccCcchHHHHHHHHHHHHHHHh
Confidence 53 3478888877777666665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.9e-06 Score=79.55 Aligned_cols=321 Identities=12% Similarity=0.001 Sum_probs=171.4
Q ss_pred HHHHHHHHHHc--CCChhHHH-HHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHH-HhcCCccCCccCCc
Q 011925 44 FTYLLLFLTDI--GLSPRGAA-AVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS-SVFGGCMPCRILST 119 (475)
Q Consensus 44 ~~~l~~~~~~~--g~s~~~~g-~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~-~~~~~~~p~~~~~~ 119 (475)
-+|+..|+++. |++..++- -+.=+..-.....-.+...+.|..|.|.. ++.+.+...+... +++.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpv-iil~~~~~i~t~~lll~~---------- 91 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPV-IILQALSYIITWLLLLFG---------- 91 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHH----------
Confidence 46888888874 88888774 44444445566777889999999887554 5555555444443 3331
Q ss_pred cchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchH
Q 011925 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
.+....-+.-+ ..|... +.++.+.+++=...+ +++--|+.+...+...+|..++..++..+++.- .
T Consensus 92 ~sv~~mq~~q~----~yg~~~-a~evay~sYiys~v~-~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~--------~ 157 (412)
T PF01770_consen 92 TSVLAMQLMQF----FYGLAT-AAEVAYYSYIYSVVD-KEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG--------G 157 (412)
T ss_pred CcHHHHHHHHH----HHHHHH-HHHHHHHHHheeecC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C
Confidence 12222211111 233333 447777777666554 556667888888888888888888888776531 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cc------cc-----------c--cc--cCC----------Ccc-------hH
Q 011925 200 NQYRWIAYSSIFIGCCFVGIFLSRTE-EP------RL-----------K--MG--LRG----------NSH-------AR 240 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~~~~~~-e~------~~-----------~--~~--~~~----------~~~-------~~ 240 (475)
..++...++......+..++.++..+ ++ +. . .+ +++ +.+ ..
T Consensus 158 ~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 237 (412)
T PF01770_consen 158 VSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLW 237 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHH
Confidence 34555544443322223222222111 10 00 0 00 000 000 11
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhh--cccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 011925 241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKA 318 (475)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~ 318 (475)
+.+++..+||..+...+-..+...++.....|.-.--.+. .+-.....|.+-.+..+.+.++++..+.++...++...
T Consensus 238 ~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~ 317 (412)
T PF01770_consen 238 KDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE 317 (412)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH
Confidence 2345556777766666655555555555444443333222 12222233455555555555666666655332332222
Q ss_pred HH-HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHH
Q 011925 319 YY-SAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC 393 (475)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~ 393 (475)
.. .+...+.+....++.. .++.|..++..++.+..+....+....-......++.-| .++|++++...+=.
T Consensus 318 l~l~~~S~l~a~~L~lm~~--t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~ya--LVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 318 LALGVFSLLQAGLLFLMSF--TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYA--LVFGINTFVALVLQ 389 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccee--eeeeeHHHHHHHHH
Confidence 22 2222222222222222 457788788878777777766666655555556677777 89999888765444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.9e-08 Score=92.65 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHh
Q 011925 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL 335 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~ 335 (475)
+..++...........+|.++.++.|.+..+.+++.....++..++.++.+++ +|.++ |+.+..+..+.+++.....
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGR--RRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-H--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--eeeEeehhhhhhhHHHHhh
Confidence 34455555566666777767788889998888888888888888888887775 55554 6678888888777744433
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 336 ILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 336 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+. ++.+.+++..++.|++.+...+....+..+..++++++ ..++.......+|..+++.+.+.+.
T Consensus 81 ~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 81 FA--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERG--RAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHH--HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hh--hhHHHHhhhccccccccccccccccccccccchhhhhh--hccccccchhhhhhhcccchhhhhh
Confidence 32 34456777888999999999999999999998988888 8899999999999999998888776
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=93.95 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHH
Q 011925 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 331 (475)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~ 331 (475)
+.+....++...+.+....+++.|++++.|.+..+.++......+...+..++.+++ +|.++ |+.+..+..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~--k~~l~~~~~~~~~~~ 90 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGA--KPMIVTGMLMRAAGF 90 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCc--hHHHHHHHHHHHHHH
Confidence 344456666777777888999999999999998888877776666666666666654 44433 777788888877776
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 332 AGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+...+. ++.+.+++..++.|++.+...+....+..+..+++++| ...|..+....+|..+|+.+.+.+.
T Consensus 91 ~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 91 ATMAIA--HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRG--RFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665553 35666677788889988888777777777777888888 8889988999999999988877764
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-08 Score=94.02 Aligned_cols=181 Identities=12% Similarity=-0.005 Sum_probs=109.2
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
.++.+.+++--+...-.+--...++|.|+++. |++..+.|.+.....+...+..|..|+++||+|.+|..+..-.....
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMAL 296 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHH
Confidence 44555554444444445556668999999998 99999999999999999999999999999999999985544444333
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
....+.+. .+ ......+.+.....+. ...+..+..+-....+++.+.+ ++-+...++......+|+...+.
T Consensus 297 ~~~~l~~~--~~-~~~~~~~~~~~~~~~l----~l~~~~G~GnGsvfk~Ip~if~--~~~G~v~G~vga~G~lGGf~lp~ 367 (417)
T COG2223 297 AAALLSLF--LT-GFGHGGSFVVFVAVFL----ALFVFAGLGNGSVFKMIPVIFP--KETGAVTGIVGAIGGLGGFFLPL 367 (417)
T ss_pred HHHHHHcc--cc-ccccCcchHHHHHHHH----HHHHHhccCcchheeechHHHH--hhhhHHHHHHHHhccccccchhH
Confidence 33333331 11 1111112222222232 3344444555555666666653 46677777777777777655443
Q ss_pred HHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (475)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (475)
..+..... .-.+...+++...+.+++..+.+
T Consensus 368 ~~g~~~~~---------tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 368 AFGVSLDL---------TGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred HHHHHHHh---------cccHHHHHHHHHHHHHHHHHHHH
Confidence 33333221 11466666666565555555443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-08 Score=98.20 Aligned_cols=165 Identities=12% Similarity=0.044 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCCh---hHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCc
Q 011925 36 NDITAACWFTYLLLFLTDI-GLSP---RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (475)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~-g~s~---~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~ 111 (475)
.........++++.|.++. +... ...|.+..+..+...+..|+.|+++||+||||..+ .+.....+..+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~--- 306 (408)
T PRK09874 231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILI-TALIFSVLLLIPMS--- 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH-HHHHHHHHHHHHHH---
Confidence 3344445556778888876 3222 23566777778888899999999999999998744 34443333333222
Q ss_pred cCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011925 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (475)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (475)
.. ...+...+.. .+.+++.+...+...++..+..+ +++|++..+..+....+|..+++.+++.+.+
T Consensus 307 ----~~--~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~--- 372 (408)
T PRK09874 307 ----FV--QTPLQLGILR----FLLGAADGALLPAVQTLLVYNSS-NQIAGRIFSYNQSFRDIGNVTGPLMGAAISA--- 372 (408)
T ss_pred ----Hh--ccHHHHHHHH----HHHHhhhHhhHHHHHHHHHHhCC-cccceeeehHHHHHHHHHHHhhHHHHHHHHh---
Confidence 01 1112211111 14566666666666777666664 6788999998888888898888888777653
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011925 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE 225 (475)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 225 (475)
..+|+..+++.+.+.++..++.++..+
T Consensus 373 -------~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 373 -------NYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred -------hcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888887777666665544333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.90 E-value=5e-09 Score=105.82 Aligned_cols=165 Identities=14% Similarity=0.105 Sum_probs=106.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhcc--CCcchhHHH-HHHHHHHHHH
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGA-GSVLVAVSFS 105 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~--Grr~~~l~~-~~~~~~~~~~ 105 (475)
+....+...........+++.|.++.|.+..+.|++.++..+...+.+|+.|+++||. ++|+..++. +.+..++..+
T Consensus 246 ~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~l 325 (455)
T TIGR00892 246 YLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHL 325 (455)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445556788999988899999999999999999999999999999984 333332222 2222222222
Q ss_pred HhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHH
Q 011925 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (475)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (475)
+.. .. .+.+. ..... .+.+++++....+..++..+..+ +++|++..++.+....+|..+++.+++.
T Consensus 326 l~~-------~~--~~~~~-~~i~~---~~~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~igp~i~G~ 391 (455)
T TIGR00892 326 LCA-------LA--GDYTG-LVIYC---IFFGLSFGSVGALLFEVLMDLVG-AQRFSSAVGLVTIVECCAVLIGPPLAGR 391 (455)
T ss_pred HHH-------Hh--chHHH-HHHHH---HHHHHHhchHHHHHHHHHHHHhh-HHHHhhHHhHHHHHHHHHHHccccceee
Confidence 111 11 12222 22222 25667777777777788888876 6789999999999888888888877766
Q ss_pred HHHhhccCCccchHHHHHHHHHHHHHHHHHH
Q 011925 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCF 216 (475)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 216 (475)
+.... .+|++.+++.+++.++.
T Consensus 392 l~~~~---------g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 392 LVDAT---------KNYKYIFYASGSIVVSA 413 (455)
T ss_pred eehhc---------CCcchHHHHhhHHHHHH
Confidence 65321 14666666655544433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.5e-08 Score=93.46 Aligned_cols=159 Identities=15% Similarity=0.133 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCcc
Q 011925 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (475)
Q Consensus 38 ~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~ 116 (475)
.......+|+-+|++|. |+|...+++++.++.+...+++.+.|+++|| +.||. +.....+.++....+.. .+
T Consensus 225 ~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~-l~~~~~l~a~~~l~l~~--~~--- 297 (394)
T COG2814 225 TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA-LIAALLLLALALLALTF--TG--- 297 (394)
T ss_pred cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH-HHHHHHHHHHHHHHHHH--hc---
Confidence 34456668999999999 9999999999999999999999999999999 87776 44444444444333221 11
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 011925 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (475)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 196 (475)
. ..+. ...... +++...+...........+. .||+++...+......++|...+..+++.+++
T Consensus 298 --~-~~~~-~~~~~~---~wg~a~~~~~~~~~~~~a~~--~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~-------- 360 (394)
T COG2814 298 --A-SPAL-ALALLF---LWGFAFSPALQGLQTRLARL--APDAADLAGSLNVAAFNLGIALGAALGGLVLD-------- 360 (394)
T ss_pred --c-hHHH-HHHHHH---HHHHHhhhhhhHHHHHhccc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 1 1111 111111 33443333334444444442 36788889999999999999999999988874
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh
Q 011925 197 DLENQYRWIAYSSIFIGCCFVGIFLS 222 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~i~~~~~~~ 222 (475)
..|+....++.+++.++...+...
T Consensus 361 --~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 361 --ALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred --hhchHHHHHHHHHHHHHHHHHHHH
Confidence 357888888877777666655543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=103.63 Aligned_cols=168 Identities=15% Similarity=-0.030 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCcc--
Q 011925 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS-- 120 (475)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~-- 120 (475)
...+.|.+.++.|.+..+.++...+..+...+..++.|+++||+|||+.... +....+++.........+ .....
T Consensus 303 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~ 379 (481)
T TIGR00879 303 IMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI-GAAGMAICLFVLGILGAS--FVTGSSK 379 (481)
T ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHHHHhhc--ccCCccc
Confidence 4456677777779999889999999999999999999999999999987544 444444433222200000 00000
Q ss_pred -chhhhhHHHHHHHHHHHHHHhHhH-hhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccch
Q 011925 121 -TLKVETISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (475)
Q Consensus 121 -~~~~~~~~~~~~~~l~~~~~~~~~-~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (475)
.......... +...+.+... ....++..|..+ +++|++..+..+....+|..+++.+.+.+..
T Consensus 380 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~---------- 444 (481)
T TIGR00879 380 SSGNVAIVFIL----LFIAFFAMGWGPVPWVIVSEIFP-LSLRPKGISIAVAANWLANFIVGFLFPTMLE---------- 444 (481)
T ss_pred chhHHHHHHHH----HHHHHHHccccCeehhhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 0111111111 2222333222 223455577765 7789999999999888888887777666543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011925 199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (475)
Q Consensus 199 ~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~ 228 (475)
..+|++.+++.+.++++..++.++..||++
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred hcCccceehhHHHHHHHHHHHHheecccCC
Confidence 346777777777777776666666667644
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-07 Score=92.96 Aligned_cols=127 Identities=16% Similarity=0.209 Sum_probs=98.4
Q ss_pred HHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 011925 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (475)
Q Consensus 272 ~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (475)
+....+++++|.+..+.++......++..++.+..+++ +|+++ |+.+..+.++..++.....+. ++.+.+++..+
T Consensus 29 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~--r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~ 104 (412)
T TIGR02332 29 FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGA--RRWIAGIMVLWGIASTATMFA--TGPESLYLLRI 104 (412)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHH
Confidence 33447788889999888888888888888888777764 55555 677777877777776666553 35666677888
Q ss_pred HHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 351 l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.|++.+...+....+..+..|++++| ...++.+....+|..+++.+.+.+.
T Consensus 105 l~G~~~~~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 105 LVGIAEAGFLPGILLYLTFWFPAYFRA--RANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888878888888888888 7888888888888888888777654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-07 Score=95.93 Aligned_cols=170 Identities=13% Similarity=0.025 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCc
Q 011925 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~ 115 (475)
........+++|.|.++. |.+......+..+..+...+..|+.|+++||+||||.++ .+.+...+.....+. .
T Consensus 263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~-~~~~~~~~~~~~~~~---~-- 336 (438)
T PRK09952 263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYI-TGALIGTLSAFPFFM---A-- 336 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHHHH---H--
Confidence 444555667889998876 999887766666777778889999999999999998754 443333333221210 0
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHH-HHHHHHHHHHHHHHHHHhhccCC
Q 011925 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF-TMVANLSLYAIAFIVFSVSTAKT 194 (475)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~~~~~ 194 (475)
.. ..+..+..+... .+.+++.+.......++.+|..+ .+.|+...++.+.. ..+|+.+++.+.+.+....
T Consensus 337 ~~-~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~e~~p-~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---- 407 (438)
T PRK09952 337 LE-AQSIFWIVFFSI---MLANIAHDMVVCVQQPMFTEMFG-ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---- 407 (438)
T ss_pred HH-cCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 00 111111111111 13455556666667788889887 57787777765433 3356666666666665321
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011925 195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (475)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e 226 (475)
..+|+..+...++.+++..+..+ ..+|
T Consensus 408 ----~~~~~~~~~~~~~~~~i~~v~~~-~~~~ 434 (438)
T PRK09952 408 ----GGSWHSVAIYLLAGCLISAMTAL-LMKD 434 (438)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHH-Hccc
Confidence 12466666655555555544433 3455
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=102.85 Aligned_cols=167 Identities=13% Similarity=0.009 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhh
Q 011925 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (475)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 124 (475)
.+.|.++++.|.+....++......+...+..++.|+++||+|||+.+ +.+.+..+++.+++.. .. .......+
T Consensus 292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~-i~~~~~~~v~~~~l~~--~~---~~~~~~~~ 365 (479)
T PRK10077 292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGT--AF---YTQAPGIV 365 (479)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHhHHHHHHHHHHHHH--HH---hcCcccHH
Confidence 455666666788887777777788888999999999999999998874 5555555555433321 00 00111111
Q ss_pred hhHHHHHHHHHHHHHHhHh-HhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHH--HhhccCCccchHHH
Q 011925 125 ETISYCVFAAIFNVGWAAT-QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF--SVSTAKTHADLENQ 201 (475)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~-~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~~~~ 201 (475)
. .... ...+.+.+.. .+...++.+|..+ +++|++..++......+|.++++.+.+.+. .++. +..+
T Consensus 366 ~-~~~~---~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~------~~~~ 434 (479)
T PRK10077 366 A-LLSM---LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV------AHFH 434 (479)
T ss_pred H-HHHH---HHHHHHHhccccchhHHHhHhhCC-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh------hhcc
Confidence 1 1111 1233333322 2334677888875 788999999998888888888776654443 1110 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Q 011925 202 YRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (475)
Q Consensus 202 ~~~~~~~~~~~~~i~~~~~~~~~~e~~ 228 (475)
|++.+++.++++++..++.+...||++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 435 NGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred CccHHHHHHHHHHHHHHHHHhccccCC
Confidence 777777766666666666666667754
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=93.83 Aligned_cols=136 Identities=10% Similarity=0.055 Sum_probs=99.5
Q ss_pred HHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc
Q 011925 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN 340 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~ 340 (475)
...........+|.+ .++.|.++.+.++......++..++.++.+++ +|.++ |+.+..+..+..++.....+. +
T Consensus 17 ~~~~~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~--r~~~~~~~~~~~~~~~~~~~~--~ 91 (385)
T TIGR00710 17 GPLGIDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGR--RPVLLLGLFIFALSSLGLALS--N 91 (385)
T ss_pred HHHHHHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC--hHHHHHHHHHHHHHHHHHHHH--c
Confidence 333444444455554 55678988888888888788888888887765 44444 677777777777766655553 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 341 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.+.+++..++.|++.+...+....+..+..+++++| ..++..+....+|..+++.+.+.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELS--RIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667788999999988888888888888888888 8888888888888888888777654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=95.19 Aligned_cols=141 Identities=13% Similarity=0.037 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCcc
Q 011925 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (475)
Q Consensus 38 ~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~ 116 (475)
........++|.|+++. |.+..+.++...+..+...+..++.|+++||+||||+.+................ .+
T Consensus 252 ~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~--- 326 (434)
T PRK15075 252 VSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW--LV--- 326 (434)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH--HH---
Confidence 34445667899999986 9999999999999999999999999999999999997554333222222111110 00
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHH-HHHHHHHHHHHHHHHHHHh
Q 011925 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~~l~~~ 189 (475)
............. +.+++.+.......++..|..| +++|+...++.+. +..+++.+++.+.+.+.+.
T Consensus 327 -~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~e~~p-~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 327 -AAPSFARMLAVEL----WLSFLYGSYNGAMVVALTEVMP-AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred -cCCchHHHHHHHH----HHHHHHHHHHhhHHHHHHHHCC-CCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0111111111111 2334444444445566778776 6789888877433 3333344555555555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-07 Score=92.43 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=107.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHH
Q 011925 249 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 327 (475)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~ 327 (475)
|+.++...+..++...........+|.|+.+++|.+..+.++......++..++.++.|++ +|.++ ||.+..+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~--r~~l~~~~~~~ 91 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGA--KRSALQGMLAC 91 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc--hHHHHHHHHHH
Confidence 4445555555555666666777888989988899999988988888888888888887765 55554 66766666555
Q ss_pred HHHHHHH---hhcC---CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 328 VFCGAGI---LILP---MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 328 ~~~~~~~---~~~~---~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
.++.+.. ...+ ..+.+.+++..++.|++.+...+.......+..+++++| ...+........|..+|+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 92 GLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSG--KVMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc--hhhhHHHHHHHHHHHHHHHHHH
Confidence 4433221 1111 134556667778999999887777767777777888888 7788888888888888887766
Q ss_pred Hhc
Q 011925 402 SYQ 404 (475)
Q Consensus 402 ~~~ 404 (475)
.+.
T Consensus 170 ~l~ 172 (392)
T PRK12382 170 LLH 172 (392)
T ss_pred HHH
Confidence 654
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-05 Score=77.71 Aligned_cols=312 Identities=12% Similarity=0.014 Sum_probs=165.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhH
Q 011925 65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ 144 (475)
Q Consensus 65 ~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (475)
.++-.....+...+.+.+.|+.|.|.. +..+......--...+. | + .+..... ..+.|+|.+..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~-lv~ga~~y~~f~~gfl~---~-----N--~y~~yfs----sallG~Gaallw 120 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWA-LVIGATCYAAFPLGFLF---P-----N--SYYLYFS----SALLGFGAALLW 120 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHH-HHHHhHHHHHHHHHHHh---c-----c--hHHHHHH----HHHhhhhHHhee
Confidence 566667778889999999999999776 55555544443322221 1 1 1111111 236788888888
Q ss_pred hhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHH--------H---HHHHHHHHH
Q 011925 145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR--------W---IAYSSIFIG 213 (475)
Q Consensus 145 ~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~ 213 (475)
.......++.++ ++.+.+..+..+.....+.++|++....+...-...+ ....+.+ . ...+.+++.
T Consensus 121 ~GqG~ylt~~st-~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 197 (461)
T KOG3098|consen 121 TGQGGYLTSNST-RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSA--IITDGTRRLVFEVLFIDFEIKVLFGVLL 197 (461)
T ss_pred cccceehhhcCC-hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEeccccc--ccccchhhhhcchhhhhHHHHHHHHHHH
Confidence 888888887765 6677888888888777777776554322221111010 0011111 0 111111111
Q ss_pred HHHHHHHhhcccccc--cccccCCC-cchHHHHH---HHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhh--ccccc
Q 011925 214 CCFVGIFLSRTEEPR--LKMGLRGN-SHARISWA---YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND--LRMGQ 285 (475)
Q Consensus 214 ~i~~~~~~~~~~e~~--~~~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--~g~~~ 285 (475)
.+..+-......++. ...+.++. .+..+.++ +++++++...+...++...+........+|+.+.-. .+.+.
T Consensus 198 ~~~~l~~i~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~ 277 (461)
T KOG3098|consen 198 AISVLSIINFDFLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNT 277 (461)
T ss_pred HHHHHHhhheeecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcc
Confidence 111111111112211 11111111 23334333 455667666665555555555555556666665433 23332
Q ss_pred c-hhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhh-cCCc---------------hHHHHH
Q 011925 286 S-AKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILI-LPMN---------------MSAFMY 346 (475)
Q Consensus 286 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~-~~~~---------------~~~~~~ 346 (475)
. ..++.....+++.++++...+.++|..||+ ++.+.++..+-.++.++... .|.+ +.....
T Consensus 278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ 357 (461)
T KOG3098|consen 278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLAL 357 (461)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHH
Confidence 2 223444445667777666666665555655 45555555554444333322 2211 133456
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHH
Q 011925 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV 397 (475)
Q Consensus 347 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~ 397 (475)
++.++.|++-...........+...++++. .++++..+-+.++..++-
T Consensus 358 ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~---~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 358 IIGFLLGFGDACFNTQRYVIIALLYPDDRA---QAFSLFKFYQSVASCVAF 405 (461)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHh
Confidence 677889999999988888888877755544 356777777777665543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-07 Score=95.03 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=103.1
Q ss_pred HHhch-hHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HH-HhhhhHHHHHH
Q 011925 246 WFKKI-LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSA 322 (475)
Q Consensus 246 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~r~k~~~~~ 322 (475)
.+|+| .++..+...++..+.++....+++.|+++++|++..+.+..............++.+++ +| +++ |+.+.+
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~--r~~~~~ 93 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGT--KRVIML 93 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHH
Confidence 45666 47777777788888888999999999999999987765544443322222333445554 34 233 677888
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 323 GGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
+..+..++...+.+.+ ++.+.+++...+.|+|.|...+....+..+..|++++.....+++...+.++|..+|+.+.+.
T Consensus 94 g~~~~~ig~~l~~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 94 GAIVLAIGYALVAWSG-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 8888777766555432 233444555677888888877776667666655432221135667778889999999888877
Q ss_pred hc
Q 011925 403 YQ 404 (475)
Q Consensus 403 ~~ 404 (475)
+.
T Consensus 173 l~ 174 (500)
T PRK09584 173 LA 174 (500)
T ss_pred HH
Confidence 75
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-07 Score=92.82 Aligned_cols=145 Identities=14% Similarity=0.038 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHH
Q 011925 255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG 333 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~ 333 (475)
+....++...........+|.|..+ .+.++.+.++......++.+++.++.+++ +|.++ |+.+..+..+..++...
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~--r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDR--KKVMIGADLIRAVLVAV 80 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhch--hHHHHHHHHHHHHHHHH
Confidence 3445556666666667777887765 57787778888777778888888887765 45444 66777776665555444
Q ss_pred HhhcC---CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 334 ILILP---MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 334 ~~~~~---~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
..+.. ..+.+.+++..++.|++.+...+....+..+..++++++ ..++..+....+|..+|+.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLT--QANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 125666677788899999998888888888888888888 8888888999999888887776654
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-07 Score=89.62 Aligned_cols=144 Identities=13% Similarity=0.053 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 011925 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~ 332 (475)
...+.++...+.........|. +.++.|.++.+.++......++..++.++.+++ +|.++ |+.+.++..+..++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~--r~~~~~~~~~~~~~~~ 92 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGR--RLPMVTSIVLFSAGTL 92 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHH
Confidence 3334444444444444555554 456779998888888888888888888887775 45544 6677777777766655
Q ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 333 GILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
...+.+ +.+.+++..++.|++.+...+....+..+..++++++ ...++......+|..+++.+.+.+.
T Consensus 93 ~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 93 ACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN--KASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred HHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555533 5666677788999999988888888888888888888 8888888888899988888776654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.6e-08 Score=94.55 Aligned_cols=171 Identities=15% Similarity=0.030 Sum_probs=104.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHh-hhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcC
Q 011925 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIAD-GFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (475)
Q Consensus 31 ~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~-~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~ 109 (475)
...+..........++.+.|++|.|+++.++|++..+..+.. .+..++.|++.||+||||.... +....+......+.
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~-~~~~~~~~~~~~~~ 293 (390)
T TIGR02718 215 ALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFIL-GVGLAGSLALLWFA 293 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHH
Confidence 334445555566667889999989999999999998887644 4557899999999999887443 33333222111110
Q ss_pred CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
.. ........... .... .+.+++.+....+..+...+..+++++|++..+..+....+|..+++.+++.+.+.
T Consensus 294 --~~-~~~~~~~~~~~-~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~ 366 (390)
T TIGR02718 294 --QA-AFWLAPGIAVA-WSCS---AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR 366 (390)
T ss_pred --HH-HcccCCcHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000011111 1111 12334445555555556555555457789998988888899999988888877643
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHH
Q 011925 190 STAKTHADLENQYRWIAYSSIFIGCCFVGI 219 (475)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 219 (475)
.||+..+...+.+.++..++
T Consensus 367 ----------~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 367 ----------FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred ----------HccHHHHHHHHHHHHHHHHH
Confidence 46777776665555554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=93.49 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=107.5
Q ss_pred cceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHH
Q 011925 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (475)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~ 103 (475)
++.+.+.+..+..........++.|.|++|.|.+..++|.+.++..+...+..++.|++.||+|+|+. +..+.+...+.
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~-l~~~~~~~~~~ 283 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL-LLISAIACVGR 283 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH-HHHHHHHHHHH
Confidence 33455556666666677777889999998889999999999999999999999999999999999886 55666666665
Q ss_pred HHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHH-HHHHHHHHHHHHH
Q 011925 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAI 182 (475)
Q Consensus 104 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~-~~~~~g~~~~~~~ 182 (475)
..+... ..+.+.....- .+.++..+...++...++.+. + +++|++..+..+ ....+|..+++.+
T Consensus 284 ~~~~~~---------~~~~~~~~~~q----~l~g~~~~~~~~~~~~~i~~~-~-~~~~~~~q~~~~~~~~g~g~~~g~~~ 348 (382)
T TIGR00902 284 WAIIGA---------IEAFPLIFLLQ----ILHCGTFAVCHLAAMRYIAAQ-P-GSEIAKLQALYNALAMGGLIAIFTAF 348 (382)
T ss_pred HHHHHh---------HhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHhC-C-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543321 01122212222 267777777777777777765 4 667788777754 4556788888888
Q ss_pred HHHHHHh
Q 011925 183 AFIVFSV 189 (475)
Q Consensus 183 ~~~l~~~ 189 (475)
++.+.+.
T Consensus 349 ~G~l~~~ 355 (382)
T TIGR00902 349 AGFIYPT 355 (382)
T ss_pred HHHHHHh
Confidence 8887654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=95.19 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCc
Q 011925 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~ 115 (475)
...+.....++|.|+++. |.+..+.+...++..+...+.+++.|+++||+||||..+....+ .++.....+. ..+
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~-~~~~~~~~~~-~~~-- 331 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSL-AALFTVPILS-ALQ-- 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH-HHHHHHHHHH-HHH--
Confidence 344555667899999886 99999999999998888899999999999999999875443332 2222111110 000
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHH
Q 011925 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173 (475)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~ 173 (475)
........ ..... +.....+.......++.+|..| ++.|+...++.+....
T Consensus 332 --~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~e~fp-~~~r~t~~g~~~~~g~ 382 (432)
T PRK10406 332 --NVSSPYAA-FGLVM---CALLIVSFYTSISGILKAEMFP-AQVRALGVGLSYAVAN 382 (432)
T ss_pred --cCCcHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHCC-CCccchhhhHHHHHHH
Confidence 01111111 11110 1112222233345567788887 7889999988766433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-07 Score=94.39 Aligned_cols=166 Identities=15% Similarity=0.109 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHH-HHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCcc
Q 011925 35 LNDITAACWFTYLLLFLTDI-GLSPRGAAAVML-SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (475)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~-i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~ 112 (475)
...........+.++|+.+. |+|+.+.|++.. ...+...++.++.|+++||+||||..++.+ +..++....... .
T Consensus 233 l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~-~l~~l~~l~~~~--l 309 (491)
T PRK11010 233 LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFG-ILQGVSNAGYWL--L 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 33444445556778888765 999999999984 666888999999999999999988644333 332332211110 0
Q ss_pred CCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011925 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192 (475)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 192 (475)
. .. ..+......... +..++.+....+..++..+..+ ++.+++..+..+....+|..+++.+.+.+.+
T Consensus 310 ~--~~-~~~~~~l~~~~~----l~~~~~g~~~~~~~a~~~~l~~-~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~---- 377 (491)
T PRK11010 310 S--IT-DKNLYSMGAAVF----FENLCGGMGTAAFVALLMTLCN-KSFSATQFALLSALSAVGRVYVGPVAGWFVE---- 377 (491)
T ss_pred H--hc-cccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 0 00 111111111111 2233333333445566666665 5566777777777777777666655555543
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 193 KTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (475)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (475)
..||+..+.+.++++++..++..
T Consensus 378 ------~~G~~~~f~~~~~~~l~~l~~~~ 400 (491)
T PRK11010 378 ------AHGWPTFYLFSVAAAVPGLLLLL 400 (491)
T ss_pred ------HhChHHHHHHHHHHHHHHHHHHH
Confidence 34788877777666666555543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-07 Score=92.78 Aligned_cols=149 Identities=12% Similarity=0.115 Sum_probs=97.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHH
Q 011925 249 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 327 (475)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~ 327 (475)
++.++...+.+..............| ++++ .|.++.+.++......++..++.+..+++ +|+++ |+.+..+..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~--~~~~~~~~~~~ 101 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNP--RVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCC--ceehHHHHHHH
Confidence 33333333333333333333333444 5555 48888888888777778888888887765 44444 56667777766
Q ss_pred HHHHHHHhhcC--CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 328 VFCGAGILILP--MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 328 ~~~~~~~~~~~--~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
.++.......+ .++.+.+.+..++.|++.+...+.......+..|++++| ...++.+....+|+.+++.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~l~~~~ 177 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERG--TIVSIWNCAHNIGGGIPPLLVLLG 177 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccch--hHHHHHHHHHHhHhHHHHHHHHHH
Confidence 66655444332 134444455567788888877776667777778888899 889999999999999888776643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-07 Score=89.41 Aligned_cols=147 Identities=7% Similarity=-0.032 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHH
Q 011925 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 329 (475)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~ 329 (475)
.++.+.+..+............+|.+. ++.|.+..+.++......++..++.++.+++ +|.++ |+.+..+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~ 80 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELA-HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSL--KHILLFLVALCVI 80 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHH-HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCcc--HHHHHHHHHHHHH
Confidence 345555555555555556666676654 5678888888888888888888888887765 44444 6777888887777
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 330 CGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.+...+. ++.+.+++..++.|++.+...+......++..++++++ ...+....+..+|..+++.+.+.+.
T Consensus 81 ~~~l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 81 GNAMFTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVT--AAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred HHHHHHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhh--HHHHHHHHHHHHHHHHhccHHHHHh
Confidence 76666554 36677777888999999887776666677777777777 6777777778888888877666554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=91.71 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCcc
Q 011925 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~ 116 (475)
...+.....++|.|+++.|.++.+.|.+.++..+...+..++.|++.||+|+||..+..+.+..+++...+.. .+
T Consensus 210 ~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~--- 284 (355)
T TIGR00896 210 SGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF--AP--- 284 (355)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH--hh---
Confidence 3445556678999998889999999999999999999999999999999965554455555555555433321 11
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
.. ... . +. .+.+++.+...+...+...+..+++++++...++.+....++..+++.+.+.+.+.
T Consensus 285 --~~-~~~--~-~~---~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 285 --MH-GLW--A-WA---LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred --hh-HHH--H-HH---HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 1 11 25667776665555555555555566778888887777777777777777777654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-07 Score=88.92 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 011925 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 330 (475)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~ 330 (475)
++...+.++...........+.|.+++++.|.++.+.++......++..++.++.+++ +|.++ |+.+.++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGP--RYTTTLSLLLLAIP 80 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHH
Confidence 4555556666666667778888888888999999888888888888888888887765 45544 67777788777777
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 331 GAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
.+...+.+. +.+.+++..++.|++.+.. +....+..+..+++++| ...++.....++|..+++.+..
T Consensus 81 ~~~~~~~~~-~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 81 CLWAGLAVQ-SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQG--TALGLAAGWGNMGGGVAQFVMP 147 (366)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhh--HHHHHHHHHhHHHHHHHHHHHH
Confidence 665555321 5566666777888876544 44556666677777788 6777777666666666655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-07 Score=93.25 Aligned_cols=149 Identities=9% Similarity=0.038 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HH-HhhhhHHHHHHHHHHHH
Q 011925 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSAGGVLWV 328 (475)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~r~k~~~~~~~~~~~ 328 (475)
.++..+...+...+.++.+..+++.|+++++|.+..+.............+..++.+++ +| +++ ||++.++.++..
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~--r~~~~~g~~~~~ 92 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGT--KRTIVLGAIVLA 92 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccch--HHHHHHHHHHHH
Confidence 45666667777788899999999999999999988776655544443444444555554 33 333 788899999888
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCC--CccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 329 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGED--LSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~--~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
++.+...+.. +....+++...+.++|.|...+....+..+.+|++ +++ ..++.+.+..++|..+|+.+.+.+.
T Consensus 93 ~g~~~~~~~~-~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~--~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 93 IGYFMTGMSL-LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLD--GAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHhc-cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhh--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8876666543 22333445677889999988887778877776554 334 4677788888888888887777764
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-07 Score=90.68 Aligned_cols=127 Identities=8% Similarity=0.049 Sum_probs=94.4
Q ss_pred HHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 011925 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (475)
Q Consensus 272 ~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (475)
+...++.++.|.++.+.+++.....++.+++.++.+++ +|.++ |+.+..+..+..++.....+. ++.+.+++..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 113 (398)
T TIGR00895 38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGR--KRVLLWSILLFSVFTLLCALA--TNVTQLLILRF 113 (398)
T ss_pred hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHH
Confidence 33444556678888888877777777788888877765 44444 667777777766665555443 35566667778
Q ss_pred HHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 351 l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.|++.+...+....+..+..++++++ ...++......+|..+++.+.+.+.
T Consensus 114 ~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 114 LAGLGLGGLMPNLNALVSEYAPKRFRG--TAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred HHhcccccchhhHHHHHHHHcCHHhhc--hhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 899999888888888888888888888 7888888899999999988877665
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=87.30 Aligned_cols=147 Identities=12% Similarity=0.077 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 011925 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 330 (475)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~ 330 (475)
+..+...++...+.........|.+ +++.|.+..+.+++.....++.+++++..+++ +|.++ |+.+.++..+.+++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~--r~~~~~g~~l~~~g 81 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY--KAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHH
Confidence 4444455555555554555656555 77889999888988888888888888887765 55554 77888888888877
Q ss_pred HHHHhhcC-CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 331 GAGILILP-MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 331 ~~~~~~~~-~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
........ .++.+.+++..++.|+|.+...+....+..+..++++++ ...++.+....+|..+|+.+...+
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTAT--RRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543322 235666677788999999999888887777777777777 667777777888888888776655
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.1e-07 Score=88.90 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=89.0
Q ss_pred hhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 011925 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMY 346 (475)
Q Consensus 268 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (475)
.....+|.+ .++.|.++.+.++......++..++.++.+++ +|+++ |+.+..+.....++.....+. ++.+.++
T Consensus 26 ~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr--r~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 100 (394)
T PRK11652 26 IYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR--RPVILVGMSIFILGTLVALFA--HSLTVLI 100 (394)
T ss_pred HHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC--hHHHHHHHHHHHHHHHHHHHH--ccHHHHH
Confidence 333344544 46678988888887777778888888887765 44444 677777777776665555443 3566666
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 347 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+..++.|++.+...+....+..+..++++.+ ...+..+.+..++..+++.+.+.+.
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLR--HANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888776665555555555666666 6777777888888888887776654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-06 Score=86.16 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 011925 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWV 328 (475)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~ 328 (475)
|+++...+.+..............+..-++++|++..+.+++..+..++..+..+..+++ +|++. |+.+.++..+..
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~--R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGG--RRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHH
Confidence 444444444444444444444444444455789999888877776666666665555553 44444 677777777766
Q ss_pred HHHHHHhhc---CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHH
Q 011925 329 FCGAGILIL---PMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIA 396 (475)
Q Consensus 329 ~~~~~~~~~---~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig 396 (475)
+......+. ..++++.+++..++.|++ +..++........-.|++++| .+.|+..-..++|..++
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG--~A~Gi~~g~G~~G~~l~ 179 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG--SALGINGGLGNLGVSVM 179 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH--HHHHHHHHHHhhHHHHH
Confidence 665555543 124667777888899997 667777777888889999999 77787744444454443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-07 Score=88.93 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=91.7
Q ss_pred HHHHHHhhhHHHHHH--HhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC
Q 011925 262 TRLVVNVSQAYLAFY--VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP 338 (475)
Q Consensus 262 ~~~~~~~~~~~~~~y--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~ 338 (475)
..........+.|.+ +.++.|.++.+.++......++..++.++.+++ +|.++ |+.+..+..+..++.....+.
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~~~~~- 91 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGR--KPVLLAGLSLFALGSLGMLWV- 91 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCC--cHHHHHHHHHHHHHHHHHHHh-
Confidence 334444556666655 567778988888888888788888888887765 44444 667777776666665555443
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 339 MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 339 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
++.+.+++..++.|++.+...+....+..+..++++.+ ...+..+....++..+++.+.+.+.
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 92 -ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKAN--RVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred -cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677888887766665556666666666665 5566666666777777777766654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-07 Score=90.59 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHH-hhhhHHHHHHHHHHH
Q 011925 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT-GQRLKAYYSAGGVLW 327 (475)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~r~k~~~~~~~~~~ 327 (475)
|.++..+.......+.++.+..++|.|+.+.+|+++.+.+.+.........++.++.+++ +|. ++ ||.+.++.++.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGr--rr~iliG~il~ 86 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGN--RMAVMLGALLM 86 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--HHHHHHHHHHH
Confidence 345566666677778888899999999999899998877766666666666677776765 554 44 67788888888
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCC--CccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 328 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGED--LSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~--~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.++...+...+ .+....++...+..+|.|...+....+..+..|++ ++. ..+++.....++|+.+++.+.+.+.
T Consensus 87 ~lg~lll~~~~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~--sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 87 AIGHVVLGASE-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRD--GGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHhh-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccc--ceehHHHHHHHHHHHHHHHHHHHHH
Confidence 77765443322 12222333444555677766666666766665543 344 4567777777889999998888775
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-07 Score=94.07 Aligned_cols=125 Identities=12% Similarity=0.062 Sum_probs=94.0
Q ss_pred HHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 011925 272 YLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAI 350 (475)
Q Consensus 272 ~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (475)
.....+.++.+.+..+.+++.....++.+++.++.+++ +|+++ |+.+++++++..++.++..+.+ +.+.+++..+
T Consensus 188 ~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GR--R~~lii~lil~~i~~ll~afa~--s~~~llv~R~ 263 (742)
T TIGR01299 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGR--KQCLLICLSVNGFFAFFSSFVQ--GYGFFLFCRL 263 (742)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 33445556678888777888787888888999887775 55555 6677777776666655555543 5666777888
Q ss_pred HHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 351 FVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 351 l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
+.|++.+...+....+..+..|++.+| ...+....+..+|..+++.+...
T Consensus 264 l~G~g~g~~~p~~~~~isE~~p~~~Rg--~~~g~~~~~~~iG~ila~~la~~ 313 (742)
T TIGR01299 264 LSGFGIGGAIPIVFSYFAEFLAQEKRG--EHLSWLCMFWMIGGIYAAAMAWA 313 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 77888777777888777765443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=87.22 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=95.5
Q ss_pred hHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 011925 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVL 348 (475)
Q Consensus 270 ~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (475)
...+|.+. ++.|.++.+.++......++..++.++.+++ +|+++ |+.+..+..+.+++.+...+. ++.+.+++.
T Consensus 40 ~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~gr--r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~ 114 (394)
T PRK10213 40 VSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDR--RYVVILFAVLLTLSCLLVSFA--NSFSLLLIG 114 (394)
T ss_pred HhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHHHHHHHHHHHH--ChHHHHHHH
Confidence 34455554 5678888888877777777777787777664 44444 677788888877776655553 467777888
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 349 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 349 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.++.|++.+...+....+..+..++++++ ...+.......+|..+|+.+.+.+.
T Consensus 115 r~l~G~~~g~~~~~~~~~i~~~~~~~~~~--~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 115 RACLGLALGGFWAMSASLTMRLVPPRTVP--KALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998888888888888888888 7777777777888888887777665
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-07 Score=92.01 Aligned_cols=134 Identities=10% Similarity=0.030 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCcc
Q 011925 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (475)
Q Consensus 42 ~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~ 120 (475)
....+.|.|+++. |.++.+.|+......+...++.++.|+++||+||||. +..+.+...++..+... .| .....
T Consensus 233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~g~~~~~~--~~--~~~~~ 307 (406)
T PRK15402 233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL-IRMGLWPMVAGLLLAAL--AT--VISSH 307 (406)
T ss_pred HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHH--HH--Hcccc
Confidence 3445578888776 9999999998888878888999999999999999887 44455444444333221 01 00011
Q ss_pred chhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011925 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (475)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (475)
...+..... .+.+.+.+....+....... .+ +++|++..+..+....+|..+++.+.+.+
T Consensus 308 ~~~~~~~~~----~~~g~g~~~~~~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 308 AYLWLTAGL----SLYAFGIGLANAGLYRLTLF-SS-DVSKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred cHHHHHHHH----HHHHHHHHHHhhhHHHHHhh-hc-cccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122221111 14556666555444443332 23 47899999988888877777766555554
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=96.46 Aligned_cols=177 Identities=14% Similarity=0.046 Sum_probs=101.3
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhH-------HHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWH-------GAGS 97 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l-------~~~~ 97 (475)
.+...+..+...........++|.|+++. |.+..+.|+..++..+...+..++.|+++||++|||... ..+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 342 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 44556666666677777778999999887 999999999999999999999999999999976553211 1111
Q ss_pred HHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHH
Q 011925 98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (475)
........+.. .+ .. ....... +... .+.+.+.+...........+.. ++.++...++.+....+|..
T Consensus 343 ~~~~~~~~~~~---~~--~~-~~~~~~~-~~~~---~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~l~~~ 410 (465)
T TIGR00894 343 GGLGPGIFAYA---LP--YL-SAAFYLT-IIIL---TLANAVSSGPLAGVLINSLDLA--PRFLGFIKGITGLPGFIGGL 410 (465)
T ss_pred HHHHHHHHHHH---HH--Hc-CCchHHH-HHHH---HHHHHHhhhhhhhhhhchhhcC--hhHHHHHHHHHHHHHHHHHH
Confidence 11111111110 01 00 0111111 1111 1222333333333334444544 34677777777777666666
Q ss_pred HHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (475)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (475)
+++.+.+.+... +...+|+..+.+.+...++..++..
T Consensus 411 i~p~l~g~~~~~-------~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 411 IASTLAGNILSQ-------DSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHhhheeeCC-------CCchHHHHHHHHHHHHHHHHHHHee
Confidence 655444433210 0124688888888776666655543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.5e-07 Score=93.04 Aligned_cols=154 Identities=13% Similarity=0.056 Sum_probs=103.4
Q ss_pred HHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011925 246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGV 325 (475)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~ 325 (475)
.+|||.|+.+.+...+.+++......-.+-++.+. .-++...+++.....+-.++.+++.|.+.+..|| ||.++.+-.
T Consensus 6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l-t~S~~~valv~~a~~LP~~Llsl~aG~laDr~dr-rrili~~~~ 83 (524)
T PF05977_consen 6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL-TGSPLMVALVQAASTLPILLLSLFAGALADRFDR-RRILILSQL 83 (524)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHH
Confidence 47899999998888888888777777777666543 4455556666666666666777777765333333 666666555
Q ss_pred HHHHHHHH---HhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 326 LWVFCGAG---ILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 326 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
+.++.... +...+..+++.+++..++.|++.+...|.-.+...+..|+++-. .+.++++...+++..+||.+.+.
T Consensus 84 ~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~--~A~al~s~~~niar~iGPalgG~ 161 (524)
T PF05977_consen 84 LRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLP--AANALNSISFNIARIIGPALGGI 161 (524)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHH--HHHHHHHHHHHHHHhccchHHHH
Confidence 44433222 22333446777788889999999999999999998888887766 45566666666555555554444
Q ss_pred h
Q 011925 403 Y 403 (475)
Q Consensus 403 ~ 403 (475)
+
T Consensus 162 L 162 (524)
T PF05977_consen 162 L 162 (524)
T ss_pred H
Confidence 3
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-07 Score=92.46 Aligned_cols=150 Identities=11% Similarity=0.105 Sum_probs=98.4
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHH
Q 011925 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (475)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~ 106 (475)
.+....+...........+.++|.++. + ++...+.+..+..+...+..|++|+++||+||||.+. .+....+++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~-~~~~~~~~~~~~ 303 (437)
T TIGR00792 226 ILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFA-GGILLMVLGYLI 303 (437)
T ss_pred HHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHHHH
Confidence 344444444444444444555666555 5 5667788888889999999999999999999998754 444455555433
Q ss_pred hcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCC------CccchhhHhhHHHHHHHHHHHHHH
Q 011925 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITL------NSTSRVVLTSCRNAFTMVANLSLY 180 (475)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~------~~~~R~~~~~~~~~~~~~g~~~~~ 180 (475)
... .+ .+.+...+.. .+.+++.+..+....++.+|..+ ++++++...+..+....+|..+++
T Consensus 304 ~~~--~~------~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~ 371 (437)
T TIGR00792 304 FFF--AG------SNLPLILVLI----ILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAG 371 (437)
T ss_pred HHH--cc------hhHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHH
Confidence 331 11 1111111111 25667777777777788777653 234568888999899999999999
Q ss_pred HHHHHHHHhhc
Q 011925 181 AIAFIVFSVST 191 (475)
Q Consensus 181 ~~~~~l~~~~~ 191 (475)
.+.+.+.+..+
T Consensus 372 ~i~g~ll~~~G 382 (437)
T TIGR00792 372 FLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHcC
Confidence 88888877654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00042 Score=69.28 Aligned_cols=215 Identities=9% Similarity=-0.021 Sum_probs=112.4
Q ss_pred HHHHHHHHc-CC-----ChhHHHHHHHHHHHHhhhh-hhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCc--c
Q 011925 46 YLLLFLTDI-GL-----SPRGAAAVMLSGQIADGFA-TIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR--I 116 (475)
Q Consensus 46 ~l~~~~~~~-g~-----s~~~~g~i~~i~~l~~~i~-~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~--~ 116 (475)
++..-.+|. .+ ++..+.++-+...+..++. .|+.+++++|++|+|.+-...........++.+. ..|.. .
T Consensus 24 ~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v-l~p~~~~~ 102 (472)
T TIGR00769 24 TILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV-IYPLSDLL 102 (472)
T ss_pred HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH-Hhcchhhc
Confidence 445555665 55 3357888888887877777 9999999999999997544333222221111110 01210 0
Q ss_pred CCc-------------c-------chhhhhHHHHHHHHHHHHHHhH-hHhhhhhhhcccCCCccchhhHhhHHHHHHHHH
Q 011925 117 LST-------------S-------TLKVETISYCVFAAIFNVGWAA-TQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 175 (475)
Q Consensus 117 ~~~-------------~-------~~~~~~~~~~~~~~l~~~~~~~-~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g 175 (475)
.++ . ..|...+.|. ...+-... ...-+++..+|+++ .+|-.|..+....+.++|
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv----~~elw~~~vvS~lFW~fandi~t-~~qakRfy~l~~~ganlg 177 (472)
T TIGR00769 103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYV----MAELWGSVVLSLLFWGFANQITT-IDEAKRFYALFGLGANVA 177 (472)
T ss_pred CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Confidence 000 0 0111111221 22222222 22356788999986 778888999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCccchHHHHH----HHHHHHHHHHHHHHHHHhhccccc---c-------cccccCCCcchHH
Q 011925 176 NLSLYAIAFIVFSVSTAKTHADLENQYR----WIAYSSIFIGCCFVGIFLSRTEEP---R-------LKMGLRGNSHARI 241 (475)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~e~---~-------~~~~~~~~~~~~~ 241 (475)
.++++.+...+.+.-.+.. .....|. ..+.+.++.+.+...+.+...++. + ++++++++.+..+
T Consensus 178 ~i~sg~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~e 255 (472)
T TIGR00769 178 LIFSGRTIKYFSKLRASLG--PGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTME 255 (472)
T ss_pred HHHHHHHHHHHHHhhhccc--cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHH
Confidence 9888777665543211100 0122342 233333333333322222111111 0 0011123345678
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHh
Q 011925 242 SWAYWFKKILYYQVALVYMLTRLVVNV 268 (475)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (475)
+++.++|+|..+.+.+...+.....+.
T Consensus 256 s~k~i~~S~yL~~ia~~vi~y~~~~nl 282 (472)
T TIGR00769 256 SLKFLVSSPYILDLALLVIAYGISINL 282 (472)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999877666555555444333
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-06 Score=87.84 Aligned_cols=120 Identities=9% Similarity=0.066 Sum_probs=81.2
Q ss_pred HHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 011925 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI 354 (475)
Q Consensus 276 y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 354 (475)
++.+++|++..+.+.......++..++.++.+++ +|+++ |+.+..+.++..++.++..+.+ +.+.+++..++.|+
T Consensus 61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~--r~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~ 136 (476)
T PLN00028 61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGP--RYGSAFLLMLTAPAVFCMSLVS--SATGFIAVRFFIGF 136 (476)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHH
Confidence 4567789988887776666667777777777765 45554 5666666666666655544433 55555566778888
Q ss_pred HHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 355 ANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 355 g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
+.+...+ ...+..+..+++++| ...|+.+...++|..+++.+...
T Consensus 137 ~~~~~~~-~~~~i~~~~~~~~rg--~a~g~~~~~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 137 SLATFVS-CQYWMSTMFNGKIVG--TANGIAAGWGNLGGGVTQLLMPL 181 (476)
T ss_pred HHHhhHH-HHHHHHHhcChhhee--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8775443 344556678888889 88888877777888877665543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=95.56 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=102.5
Q ss_pred cceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHH
Q 011925 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (475)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~ 102 (475)
+....+.+..+.............|+|.++. |.++...++......+...+..|++++++||+|+||.+.+ +.++.++
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~-g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI-GALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHH
Confidence 3344455555555555556666677788887 8877766665555567778899999999999999988544 5555555
Q ss_pred HHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCc------cchhhHhhHHHHHHHHHH
Q 011925 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVAN 176 (475)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~~~g~ 176 (475)
+...+.. .| ..+.+...... .+.++|.+....+..++.+|..+.. ++++...+..+....+|.
T Consensus 307 ~~~~~~~--~~-----~~~~~~~~~~~----~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ 375 (448)
T PRK09848 307 GYLLFFW--VS-----VWSLPVALVAL----AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQ 375 (448)
T ss_pred HHHHHHH--cC-----chhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHH
Confidence 5443331 11 11222211111 2567788888888888888876522 234778888888899999
Q ss_pred HHHHHHHHHHHHhhc
Q 011925 177 LSLYAIAFIVFSVST 191 (475)
Q Consensus 177 ~~~~~~~~~l~~~~~ 191 (475)
.+++.+.+.++...+
T Consensus 376 aig~~i~g~~l~~~G 390 (448)
T PRK09848 376 AIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHcC
Confidence 998888887776554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-06 Score=86.36 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH
Q 011925 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~ 334 (475)
....+....+.......+|.+. ++.|.+..+.++......++..++.++.+++ +|.++ |+.+..+.....++....
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~--r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGR--KPVAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCC--hHHHHHHHHHHHHHHHHH
Confidence 3334444444455556666665 4568888777777777777777777877765 45444 677777777777766655
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 335 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
...+ +.+..++..++.|++.+...+....+..+..++++++ ...+..+....++..+++.+.+.+.
T Consensus 86 ~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 86 SLAE--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRA--KVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHhC--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433 5555566677889988888877777877788888888 7778877777888878877665543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.5e-07 Score=85.89 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHH
Q 011925 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAG 333 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~ 333 (475)
.+.+....+.--.+.. ...++.++.+++..+.+.+.....+.--++-++.+.+ .||. |+.+..++.+.+++.++
T Consensus 35 fiGYa~fYl~RknF~~-a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~---sDr~npr~fm~~gLilsai~nil 110 (448)
T COG2271 35 FIGYAAFYLTRKNFNL-AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVL---SDRSNPRYFMAFGLILSAIVNIL 110 (448)
T ss_pred HHHHHHHHHHHHhHhh-ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhh---cccCCCceeehHHHHHHHHHHHH
Confidence 3334443333333333 3345556667998888888777777766677765554 5655 67788888888888777
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHH--HHhc
Q 011925 334 ILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL--QSYQ 404 (475)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~--~~~~ 404 (475)
+.+.+ +.+.+.++..+-|..+|.-.|.+......-.+++.+| ...+++|..+++|+++.+.+. +.+.
T Consensus 111 ~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG--~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 111 FGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG--TWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred Hhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC--ceEEEehhhhhcccchHHHHHHHHHHH
Confidence 76644 6777778888999999998988888888888999999 999999999999999999888 5554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-07 Score=91.51 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=111.8
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
.+....+....+...+...+.+++.++|.++. |.+ ...+.+..+..+...+..|++++++||+||||.+.. +....+
T Consensus 224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~-~~~~~~ 301 (428)
T PF13347_consen 224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII-GLLLAA 301 (428)
T ss_pred cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh-hHHHHH
Confidence 34445566666777777888888889999997 777 677888889999999999999999999999998654 444444
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCc------cchhhHhhHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVA 175 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~~~g 175 (475)
+..+..+. .+ ..+.++..+... +.+++.+.......++.+|..+.. ++.+...+.......++
T Consensus 302 ~~~~~~~~--~~-----~~~~~~~~i~~~----l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 302 LGFLLLFF--LG-----PGSPWLVLILFI----LAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred HHHHHHHH--HH-----hhhHHHHHHHHH----HhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 44443331 12 112233222222 678888888888888998887632 22366778888888889
Q ss_pred HHHHHHHHHHHHHhhcc
Q 011925 176 NLSLYAIAFIVFSVSTA 192 (475)
Q Consensus 176 ~~~~~~~~~~l~~~~~~ 192 (475)
..+++.+.+.++...+.
T Consensus 371 ~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 371 QGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 88888888877776543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=89.87 Aligned_cols=141 Identities=9% Similarity=0.022 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHh
Q 011925 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGIL 335 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~ 335 (475)
+..++............|.+. ++.|.+..+.++......++.+++.++.+++ +|+++ |+.+.++..+..++.+...
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGT--RRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCc--HHHHHHHHHHHHHHHHHHh
Confidence 344444444455556666655 5568888888888888888888888887765 44444 6777888887777766655
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 336 ILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 336 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+. ++.+.+++..++.|++.+...+....+..+..|++++| ...++......+|..+|+.+.+.+.
T Consensus 86 ~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 86 VA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRG--RAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred Cc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHhhhhhccHhHhc
Confidence 43 36666677888999999998888888888888888888 8888888999999999988877665
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00043 Score=68.37 Aligned_cols=343 Identities=13% Similarity=0.082 Sum_probs=163.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHH---HHHHHHH---H
Q 011925 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG---SVLVAVS---F 104 (475)
Q Consensus 32 g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~---~~~~~~~---~ 104 (475)
+++.+....-++....+.|+.+. .-|-...+.--.+-.+...+..|..|.+.||.-|.|...... -+..+++ +
T Consensus 10 sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~ 89 (432)
T PF06963_consen 10 SHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALF 89 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667778888887 435444555555556667789999999999998877632221 1122222 2
Q ss_pred HHhcCCccCCccCCccchhhhhHHHHH---HHHHHHHHHhHhHhhh-hhhhcccC-CCccchhhHhhHHHHHHHHHHHHH
Q 011925 105 SSVFGGCMPCRILSTSTLKVETISYCV---FAAIFNVGWAATQVAH-MSMVNCIT-LNSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 105 ~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~-~al~~~~~-~~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
..++. .+. .... ..+.....+.+ +..+-.++..+..+.. -=++..++ .+++++.+.++...-...+.-+++
T Consensus 90 ~~l~~--~~~-~~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~cklla 165 (432)
T PF06963_consen 90 LLLLS--YPS-SSSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLA 165 (432)
T ss_pred HHHHh--CCc-cccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 22221 110 0000 01111111211 1111112222222211 11222333 245566777877777777888888
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHh-------hcccc---ccccc--ccC--CC--------c
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL-------SRTEE---PRLKM--GLR--GN--------S 237 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~e---~~~~~--~~~--~~--------~ 237 (475)
|.+.+.+.... +......+.+...++...+-+ ...|+ ++.++ +.+ ++ .
T Consensus 166 Pl~vG~l~t~~----------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (432)
T PF06963_consen 166 PLFVGLLMTFA----------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDP 235 (432)
T ss_pred HHHHHHHhhcc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchh
Confidence 88887776532 333333333333333322221 11221 11110 000 00 0
Q ss_pred c-----------hHHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHH
Q 011925 238 H-----------ARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306 (475)
Q Consensus 238 ~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 306 (475)
+ ..+.|+.-+|++-|...+...++. +..-.+......|+... |+++...+.+-....+..+.+.++.
T Consensus 236 ~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY-~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~ 313 (432)
T PF06963_consen 236 SILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLY-FTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVY 313 (432)
T ss_pred hHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012233444445443333222222 33344566677888776 9998877766666666677777776
Q ss_pred HHH-HHHhhhhHHHHHHHHH----HHHHHHHHHhhcCCchHHHHHHHHHHHH-----HHHHHHHHhHhhhhhhhccCCCc
Q 011925 307 QEM-AWTGQRLKAYYSAGGV----LWVFCGAGILILPMNMSAFMYVLAIFVG-----IANALMMVTGISMQNVLVGEDLS 376 (475)
Q Consensus 307 ~~~-~~~~~r~k~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~g-----~g~~~~~~~~~~~~~~~~~~~~~ 376 (475)
+++ +|++- .|.-.++.. ....+ +..++.+.++....-...++.| +|.=.+.-...-+.++..|++++
T Consensus 314 p~l~~riGl--vr~G~~~l~~q~~~L~~~-v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~R 390 (432)
T PF06963_consen 314 PWLMKRIGL--VRAGLWSLWWQWVCLALC-VVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESER 390 (432)
T ss_pred HHHHHHhcc--hhhHHHHHHHHHHHHHHH-HHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHh
Confidence 665 34433 333333332 22222 2223333222011111222223 33323333455567778999999
Q ss_pred cchhhhhHHHHHHHHHHHH
Q 011925 377 GCAFVCGTLSFLDKMSCGI 395 (475)
Q Consensus 377 G~~~~~~~~~~~~~ig~~i 395 (475)
| ..+|+.+-.+++.-.+
T Consensus 391 g--~v~gvq~sl~~lf~ll 407 (432)
T PF06963_consen 391 G--AVSGVQNSLQSLFELL 407 (432)
T ss_pred h--HHHHHHHHHHHHHHHH
Confidence 9 8888877777765543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-08 Score=70.41 Aligned_cols=62 Identities=24% Similarity=0.362 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH
Q 011925 36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (475)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~ 97 (475)
.....+...+|++.|+++.|+|+.++|.+.++..+...+..|++|.++||+||+|..+..+.
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34556677889999999999999999999999999999999999999999999998555433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.1e-07 Score=88.10 Aligned_cols=145 Identities=10% Similarity=0.086 Sum_probs=95.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
+....+..+.......+++|.|.+|.|.+..+.|.+.++..+...+..++.|++.||+|+|+. +..+.+..++......
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-l~~~~~~~~~~~~~~~ 288 (382)
T PRK11128 210 FLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL-LLLSAICGVVRWGLMG 288 (382)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHH
Confidence 344444444555556678899998889999999999999999999999999999999999887 4555555555543332
Q ss_pred CCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHH-HHHHHHHHHHHHHHHHHH
Q 011925 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVF 187 (475)
Q Consensus 109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~~l~ 187 (475)
. . .+.+.. +.. ..+.+++.+...++...+..+. +++++++..+... ....+|..+++.+++.+.
T Consensus 289 ~-------~--~~~~~~-~~~---~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 289 S-------T--TALPWL-IVI---QILHCGTFTVCHLAAMRYIAAR--PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred h-------h--hhHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHC--CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 122221 211 1256677776666666666664 2555677776654 334556677777777776
Q ss_pred Hh
Q 011925 188 SV 189 (475)
Q Consensus 188 ~~ 189 (475)
+.
T Consensus 354 ~~ 355 (382)
T PRK11128 354 QH 355 (382)
T ss_pred Hh
Confidence 43
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-06 Score=86.42 Aligned_cols=150 Identities=10% Similarity=0.069 Sum_probs=95.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHH
Q 011925 249 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 327 (475)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~ 327 (475)
||++|.....+++..........++|.|+.++.|.++.+.++......+...++.++.+++ +|.+| |+.+..+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~gr--r~~~~~~~~~~ 78 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGL--KKHLLWIISGL 78 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHH
Confidence 5778888888888888888889999999999899999988888888888888888887775 45544 55555444433
Q ss_pred HHHHHHH---hhcCC--chHH-HHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 328 VFCGAGI---LILPM--NMSA-FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 328 ~~~~~~~---~~~~~--~~~~-~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
+++.... .+.+. .+.+ ...+..++.+++.+...+...++..+..+ +++ ..++.......+|..+|+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~g~~~~~~~~g~~~g~~~~g 154 (396)
T TIGR00882 79 LVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSN--FEYGKARMFGCVGWALCASIAG 154 (396)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcc--cccchhhhhcccHHHHHHHHHh
Confidence 3322211 11110 1111 22233455666666656655555444322 233 3455566666788888887766
Q ss_pred Hhc
Q 011925 402 SYQ 404 (475)
Q Consensus 402 ~~~ 404 (475)
.+.
T Consensus 155 ~l~ 157 (396)
T TIGR00882 155 ILF 157 (396)
T ss_pred hhh
Confidence 553
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.7e-07 Score=88.58 Aligned_cols=146 Identities=8% Similarity=-0.002 Sum_probs=103.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHH
Q 011925 249 KILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLW 327 (475)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~ 327 (475)
||+++.+.+..++..+.........+.+ .++.+.++.+.+++.....+...+..++.|++ ||.+| |+++.++..+.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~gr--r~vl~~~~~~~ 78 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPK--GRVMFIANGIK 78 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCC--chhhHHHHHHH
Confidence 4567777777777766555555555555 45667777666777777677777777776664 33333 67777777776
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 328 VFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.++.+...+.. +. ++..++.|++.+...|...++..+..|+++++ .++|..+....++..+|+.+.+.+.
T Consensus 79 ~~~~~~~~~~~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~--~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 79 LLGCLLMLFGI--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLV--KANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544433322 22 34557889999999999999999999998888 8888888888888888888777664
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.1e-07 Score=80.27 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=95.7
Q ss_pred HHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhh
Q 011925 46 YLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (475)
Q Consensus 46 ~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 124 (475)
.=|.|+++- |+|+...+.+.+......++.+|++|.++||+||+-.|+..+.+.+.++=..++.. ..+.+
T Consensus 286 lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--------~lsPy- 356 (459)
T KOG4686|consen 286 LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--------FLSPY- 356 (459)
T ss_pred hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--------hccHH-
Confidence 347778776 99999999999999999999999999999999998888777777766663333310 01111
Q ss_pred hhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 011925 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (475)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (475)
.... +.|..++...-+.+.+++.+.| +++-+.+.++.+...++|-.+.+++++.+.
T Consensus 357 --~~m~----~lGLsysllAcslWP~va~~vp-E~qLGTaygf~qsIqNLgla~i~Iiag~i~ 412 (459)
T KOG4686|consen 357 --TSMT----FLGLSYSLLACSLWPCVASLVP-EEQLGTAYGFIQSIQNLGLAFIPIIAGFIA 412 (459)
T ss_pred --HHHH----HHhhhHHHHHHHHhhhhhhhCC-HHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence 1111 4566677666667777888776 788899999999999999998888877665
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-07 Score=83.63 Aligned_cols=167 Identities=11% Similarity=0.045 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCcc
Q 011925 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~ 116 (475)
+..++++..++|.++.|.|+|+.+.|++++...+.........-.+.+|..-+|++.+.....+.++...+.. .|
T Consensus 221 S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~--~P--- 295 (395)
T COG2807 221 SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL--AP--- 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH--hh---
Confidence 6777888899999999999999999999999999999999999999999776677666666555555443321 23
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 011925 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (475)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 196 (475)
...... +. .+.|+|.+....-...++.+-++|+++-+++++..+....+=...+|.+.+.+-.
T Consensus 296 -~~~~~l-----w~---~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD-------- 358 (395)
T COG2807 296 -GQLPIL-----WA---LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD-------- 358 (395)
T ss_pred -hhHHHH-----HH---HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH--------
Confidence 111111 21 1577777766666677888888888888888887766544444444444444432
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011925 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e 226 (475)
...+|+...+......++..+..+..-|+
T Consensus 359 -a~gsw~~~~~~l~~~~i~m~i~Gl~a~r~ 387 (395)
T COG2807 359 -ATGSWSAPLVLLALATLLMLIFGLRAGRN 387 (395)
T ss_pred -hcCChHHHHHHHHHHHHHHHHHHhhcchh
Confidence 34478887777666666666655544444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-06 Score=85.30 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHH
Q 011925 255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAG 333 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~ 333 (475)
+.+..++...-.....+-+|.+. +++|.+..+.++....+.++..+..+..+++ +|.++ |+.+.++..+..++.+.
T Consensus 11 ~~~~~~~~~ld~tiv~~a~p~i~-~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Gr--k~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 11 IVLVYIPVAIDATVLHVAAPTLS-MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGF--KRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHH
Confidence 33444555444555666677775 5578887777777777777766777766654 33333 77888888888877666
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhh-ccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 011925 334 ILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL-VGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS 405 (475)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~-~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~ 405 (475)
..+. ++.+.+++..++.|+|.+...+......... .++++++ ...|+......+|..+|+.+.+.+..
T Consensus 88 ~~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~--~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 88 AAFS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN--MALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6554 3667777778899999998887666655443 4667777 78889889999999999988887763
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-06 Score=84.63 Aligned_cols=128 Identities=14% Similarity=0.077 Sum_probs=96.6
Q ss_pred HHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 011925 271 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLA 349 (475)
Q Consensus 271 ~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (475)
.+...++.++.|.++.+.++......++..++.++.+++ +|.++ |+.+.++..+..++.....+.+ +.+.+++..
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~--r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r 113 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGR--KPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSR 113 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 334445567789988888877777778888888887765 44444 6777888888777766655543 666777788
Q ss_pred HHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 350 IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 350 ~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
++.|++.+...+....+..+..+++++| ...++...+..+|..+++.+...+.
T Consensus 114 ~l~G~g~g~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 114 FIVGMGMAGEYACASTYAVESWPKHLKS--KASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCCHhHhh--HhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 8999999988888888888888888888 7888888888888888887766654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-06 Score=87.67 Aligned_cols=160 Identities=13% Similarity=0.092 Sum_probs=112.9
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCc--chhHHHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF--KIWHGAGSVL 99 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr--~~~l~~~~~~ 99 (475)
.++.+.|-++-+..+-..+.+..+...|.+++ |++..+...+..+..+...++..++|++.||+|.| |.. ......
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l-~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL-LISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH-HHHHHH
Confidence 45566777777777777777888889999987 99999999999999999999999999999999998 663 333333
Q ss_pred H-HHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHH
Q 011925 100 V-AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (475)
Q Consensus 100 ~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (475)
. .+....++. ..|.... ..+.+. +..+ ..+.|+..+..+....++.+++.| +++++...++........+.+
T Consensus 359 ~~~i~~~g~~G-~~~~~~g-~~~~~~-f~~~---a~~~G~~~G~~qs~sRs~~~~LiP-~g~e~efFgly~i~gk~ss~l 431 (477)
T PF11700_consen 359 WIIIPLYGLFG-FWPSFFG-LKSPWE-FWVL---AVLIGLFMGGIQSASRSLFSRLIP-PGREAEFFGLYAITGKASSWL 431 (477)
T ss_pred HHHHHHHHHHH-hhhcccC-cccHHH-HHHH---HHHHHHHhhhHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHH
Confidence 2 222221110 0110001 111111 1111 226777778888888899999998 566799999999988888999
Q ss_pred HHHHHHHHHHhh
Q 011925 179 LYAIAFIVFSVS 190 (475)
Q Consensus 179 ~~~~~~~l~~~~ 190 (475)
+|.+.+.+....
T Consensus 432 GPll~g~i~~~t 443 (477)
T PF11700_consen 432 GPLLFGLITDAT 443 (477)
T ss_pred HHHHHHHHHHHh
Confidence 888887776653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=85.95 Aligned_cols=130 Identities=9% Similarity=0.067 Sum_probs=95.3
Q ss_pred hhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 011925 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMY 346 (475)
Q Consensus 268 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (475)
.....+|.+.+ +.|.++.+.+.......++..++.++.+++ +|.++ |+.+..+..+..++.....+.+ +.+.++
T Consensus 9 ~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~ 83 (377)
T PRK11102 9 MYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGR--KPVILGGTLVFALAAVACALAQ--TIDQLI 83 (377)
T ss_pred HHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCC--hHHHHHHHHHHHHHHHHHHHHc--cHHHHH
Confidence 34455666665 468888888887777777888888877765 44444 6777778777777766555533 556666
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 347 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+..++.|++.+...+....+..+..++++++ ...++......+|..+++.+.+.+.
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFS--RMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778889998888877777888888888888 7888888888888888887766554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-07 Score=90.09 Aligned_cols=128 Identities=10% Similarity=0.071 Sum_probs=95.0
Q ss_pred HHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHH
Q 011925 265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSA 343 (475)
Q Consensus 265 ~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (475)
.........| ++.++.|.+..+.+++.....++..++.++.+++ +|.++ |+.+..+..+..++.++..+.+ +.+
T Consensus 10 ~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~~~~~~--~~~ 84 (379)
T TIGR00881 10 VRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNP--RVFLPIGLILCAIVNLFFGFST--SLW 84 (379)
T ss_pred hHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCC--eehhHHHHHHHHHHHHHHHHhh--hHH
Confidence 3334444444 5667789998888888888888888888887765 44444 6777788777777766665543 666
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHH
Q 011925 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (475)
Q Consensus 344 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l 399 (475)
.+++..++.|++.+...+....+..+..++++++ ...++.+....+|..+++.+
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~ 138 (379)
T TIGR00881 85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG--TWVSFWNCSHNVGGGLLPPL 138 (379)
T ss_pred HHHHHHHHHHhhccccCCchHHHHHHhcCHhhhe--eeEeehhccchhHHHHHHHH
Confidence 6677788889998888888888888888888888 77888888888888888843
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-05 Score=79.96 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=101.9
Q ss_pred HHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccch
Q 011925 45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (475)
Q Consensus 45 ~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr-~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 122 (475)
..+..|+++. |.+......+...+.-..-+...+.|.++|+ +||+|.. +.+.++..++..++.....| .....
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tI-l~~~ii~~lG~~llai~a~~----~~~~~ 82 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTI-LYLSIVYVVGHALLSFGAIP----SSGHP 82 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHhccCc----ccccc
Confidence 4455666665 9999999999999999999999999999997 7999974 44555555554444321112 11111
Q ss_pred hhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCcc--chhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHH
Q 011925 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST--SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (475)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~--~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
......+ +...+..+|.+..-....+...|..++.+ +|.+...+.+...++|+.++..+...+-...+..+ ...
T Consensus 83 ~~~~~~l-~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg---~~~ 158 (654)
T TIGR00926 83 LHDLLDL-LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG---CQD 158 (654)
T ss_pred hHHHHHH-HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cCc
Confidence 1111111 11124567777777788888888765322 34556677777777787776666554432211111 134
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011925 201 QYRWIAYSSIFIGCCFVGIF 220 (475)
Q Consensus 201 ~~~~~~~~~~~~~~i~~~~~ 220 (475)
+|...|.+.++..++..++.
T Consensus 159 ~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 159 CYPLAFGVPAILMILALIVF 178 (654)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 68888877766555555444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-06 Score=82.91 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=133.1
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~ 100 (475)
+.++.+.+-+..+..+...+....|.+.|++|. |.+....|.+.++..+.....-...+++..|+|.|+. +..+.+..
T Consensus 205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l-l~~a~~~~ 283 (400)
T PF03825_consen 205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL-LLLALVAY 283 (400)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Confidence 345566777777888888888999999999999 4888899999999999999999999999999999886 44455544
Q ss_pred HHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHH-HHHHHHHHH
Q 011925 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSL 179 (475)
Q Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~-~~~~g~~~~ 179 (475)
++=+.+... . . .+.+.....-.+-..+.++.++....+...++.+..| ++.|++..++... ...+|..++
T Consensus 284 ~vR~~l~a~--~----~--~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p-~~~~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 284 AVRWLLYAY--F----S--DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP-PELRATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred HHHHHHHHH--h----c--CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhhHHHHHH
Confidence 444332221 0 0 1111111111100124678888888888888888886 7888998887655 467899999
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~ 227 (475)
+.+++.+.+..+. +....|...+.+.+.+.++..++.+...||+
T Consensus 355 ~~igG~l~~~~g~----~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 355 SLIGGWLYDAFGA----RGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHhcc----hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999876542 1234566666666666666666655556664
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-06 Score=85.08 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 011925 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGA 332 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~ 332 (475)
...+..++..+........+|. +.++.|.++.+.+.......++..++.++.+++ +|.++ |+.+..+..+..++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~ 100 (496)
T PRK03893 24 AAWLGYLLDGFDFVLITLVLTE-VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGR--RLAMVISIVLFSVGTL 100 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHH
Confidence 3444444444444444444554 456778888877777777777778888777765 44444 6677777777777666
Q ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 333 GILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
...+. ++.+.+++..++.|++.+...+....+..+..+++++| ...++......+|..+++.+.+.+.
T Consensus 101 ~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 101 ACGFA--PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRN--KASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55553 36666677788999999888887778888888888888 7788888888899999988887664
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=98.50 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHHHHc-CCChh-HHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCcc
Q 011925 35 LNDITAACWFTYLLLFLTDI-GLSPR-GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (475)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~-g~s~~-~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~ 112 (475)
...........++|.|+++. |.+.. ..|++.+...+...++.++.|+++||+++|+.+. .+.+..+++.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~-~~~~~~~~~~~~~~~--- 318 (1146)
T PRK08633 243 YFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVP-LGALGLALSLFLLPT--- 318 (1146)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchh-HHHHHHHHHHHHHHH---
Confidence 33344455667788888886 99999 9999999999999999999999999999988643 444444444332221
Q ss_pred CCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011925 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (475)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (475)
. .+.+...+.. .+.+++.+...++..+++.+..+ +++|++..+..+....+|.++++.++..+
T Consensus 319 ----~--~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~p-~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 319 ----A--PSLASVLVLF----FLFGFSAGLFIVPLNALIQFRAP-EKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred ----h--hhHHHHHHHH----HHHHHHHHHhhHHHHHHHhhcCC-ccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1122222222 25677777777788888888776 77899999998888888877666555444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.9e-06 Score=81.40 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Q 011925 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFC 330 (475)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~ 330 (475)
+..+.+.++...+.......+.|.+ ++++|.++.+.++......++..++++..+++ +|+++ |+.+..+..+..++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~--r~~l~~g~~~~~~~ 104 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY--KAGIITGLFLYALG 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHH
Confidence 3444455555555555666677766 78889999888888888888888888887764 55555 78888888888877
Q ss_pred HHHHhh-cCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 331 GAGILI-LPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 331 ~~~~~~-~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
.+.... ...++.+.+++..++.|+|.+...+..+.+..+..++++++ ...+.......+|..+|+.+...+
T Consensus 105 ~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~--~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655421 12346667777888999999998887777766655444444 345666667777777777665443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=8e-06 Score=81.20 Aligned_cols=143 Identities=10% Similarity=0.047 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHH-----hhhhHHHHHHHHHHHHH
Q 011925 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT-----GQRLKAYYSAGGVLWVF 329 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~r~k~~~~~~~~~~~~ 329 (475)
...++...........-+|.|+.+. |++.++.+++..+... .+..++.+++ +|+ ++| |+.+.++....++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~r-r~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRR-RGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcc-hhHHHHHHHHHHH
Confidence 3455666666777788899999875 9999888877555432 4555665554 555 332 5567777777766
Q ss_pred HHHHHhhcCC-chHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 330 CGAGILILPM-NMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 330 ~~~~~~~~~~-~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+...+.+.+. ++.+.+++..++.++..+...+...++..+..++++++ .+.++...+..+|..+++.+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~--~~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERG--AGAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6666555532 34555555556667777777777778888888888888 7888888888888888877666554
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-05 Score=74.29 Aligned_cols=349 Identities=13% Similarity=0.068 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhh-----ccCCcchhHHHHHHHHHHHHHHhcCCc
Q 011925 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (475)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~D-----r~Grr~~~l~~~~~~~~~~~~~~~~~~ 111 (475)
++..++.. .+|.+++.-|.|-+..+.....+. ---...+|..+.| |+||||.|+.-.-.+.+..+.++-. +
T Consensus 44 GiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~-~ 119 (510)
T KOG3574|consen 44 GIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSY-L 119 (510)
T ss_pred CCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhh-C
Confidence 44555555 667777755888777775544432 2234678889999 8999999987554444433332221 3
Q ss_pred cCCccCCccc-hhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHH--
Q 011925 112 MPCRILSTST-LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-- 188 (475)
Q Consensus 112 ~p~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~-- 188 (475)
++........ ....+..+ .+.+..+..+.-+++...+.-.+-. +++-+-++.....+...|..++..+...+-+
T Consensus 120 v~~~~g~ng~~p~v~~lt~--~f~LLnflaAtQDIAVDgwALtmLs-~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~d 196 (510)
T KOG3574|consen 120 VDRGLGGNGGLPNVVALTL--LFLLLNFLAATQDIAVDGWALTMLS-RENLGYASTCQSVGQTAGYFLGNVVFLALESPD 196 (510)
T ss_pred CCcccccCCCCcchHHHHH--HHHHHHHHHhhhhhhhhHHHHHhcC-HhhcCchhHHHHHHHhhhHHhhcceeeEecChh
Confidence 4432331211 11111111 1125666666677777766555554 6667777777777777777766544322211
Q ss_pred ----hh-cc---CCcc-chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHH---HHHHHHhchhHHHHH
Q 011925 189 ----VS-TA---KTHA-DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARI---SWAYWFKKILYYQVA 256 (475)
Q Consensus 189 ----~~-~~---~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 256 (475)
++ .. .+.- -..+-|.|. .+.++...+..+..+|++++..++++....+ -+++++|-|+.....
T Consensus 197 F~N~y~rs~P~~~g~ItL~gy~~fwg-----~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v~~la 271 (510)
T KOG3574|consen 197 FCNTYLRSIPLDQGFITLAGYLWFWG-----ALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSVRWLA 271 (510)
T ss_pred hhhHHHhcCcCccceEEhhHHHHHHH-----HHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccHHHHH
Confidence 00 00 0000 011122222 2233333333344566544322233333333 345677777776666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-H--HHhhhh-HHH-HHHHHHHHHHHH
Q 011925 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-A--WTGQRL-KAY-YSAGGVLWVFCG 331 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~r~-k~~-~~~~~~~~~~~~ 331 (475)
......-+++.+.....+.-+.+ .|.+..+.+..........++.+...+++ + |-.+++ |.. +.+.......+
T Consensus 272 ~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~- 349 (510)
T KOG3574|consen 272 GILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTA- 349 (510)
T ss_pred HHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHH-
Confidence 65555555555544444444444 37776655543322222233333333322 1 001111 211 22222222112
Q ss_pred HHHhhcC---C--ch--HHHHHHHH---HHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 332 AGILILP---M--NM--SAFMYVLA---IFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 332 ~~~~~~~---~--~~--~~~~~~~~---~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
+.+..+ . .. ....++.+ .+.+...-..+.......++..+++-.| +++.+.|...++|+-.=..++.
T Consensus 350 -Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~igg--TymTlLNTLsnLGg~wp~tv~l 426 (510)
T KOG3574|consen 350 -LVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGG--TYMTLLNTLSNLGGNWPGTVAL 426 (510)
T ss_pred -HHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCc--cHHHHHHHHHHhcCCcHHHHHH
Confidence 122222 1 11 11111112 2222222223334455566677778788 9999999888888765544443
Q ss_pred H
Q 011925 402 S 402 (475)
Q Consensus 402 ~ 402 (475)
.
T Consensus 427 ~ 427 (510)
T KOG3574|consen 427 W 427 (510)
T ss_pred H
Confidence 3
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5e-07 Score=87.82 Aligned_cols=153 Identities=12% Similarity=0.155 Sum_probs=91.9
Q ss_pred HhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHH-HHHH
Q 011925 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYY-SAGG 324 (475)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~-~~~~ 324 (475)
.||++++.+...+++..+......++++.|+++..|+++.+.|.+.....+..++.+++.|.+ +|+++| |+.+ .+..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~k-K~Ll~~i~~ 82 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLK-KHLLWFIAI 82 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTC-SHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhh-HHHHHHHHH
Confidence 478889988888888888888999999999999889999999998888888888888888776 666665 4433 3333
Q ss_pred HHHHHHHHHH-hhcC--CchHHHH-HHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHH
Q 011925 325 VLWVFCGAGI-LILP--MNMSAFM-YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400 (475)
Q Consensus 325 ~~~~~~~~~~-~~~~--~~~~~~~-~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~ 400 (475)
.....+.... .+.| ..|.+.. ++..+..++......|..-++.++. .|+.+ .=||=..+...+|.+++..+.
T Consensus 83 l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--sr~~~--feYG~~R~wGSig~ai~s~~~ 158 (412)
T PF01306_consen 83 LLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV--SRRNG--FEYGRARMWGSIGFAIASLLA 158 (412)
T ss_dssp HHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--HHHHS--S-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH--HHHhc--CCcchHHHHhhHHHHHHHHHh
Confidence 3222222211 1211 1232221 1112223333333333333333332 23344 567777778888888888888
Q ss_pred HHhc
Q 011925 401 QSYQ 404 (475)
Q Consensus 401 ~~~~ 404 (475)
|.+.
T Consensus 159 G~L~ 162 (412)
T PF01306_consen 159 GILF 162 (412)
T ss_dssp HHHH
T ss_pred heee
Confidence 7765
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-06 Score=96.12 Aligned_cols=154 Identities=11% Similarity=-0.017 Sum_probs=102.7
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHH-
Q 011925 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS- 105 (475)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~- 105 (475)
...++.+...+..+...+++|.|+++. |.++...|++.+...+...++.++.|+++||.++++.... +.+..++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~-~~~~~~~~~~~ 307 (1140)
T PRK06814 229 LAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI-GALLMGLFGLD 307 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH-HHHHHHHHHHH
Confidence 344444445555566677899999997 9999999999999999999999999999998887665333 3333222221
Q ss_pred HhcC--Cc-cCCc-------cCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHH
Q 011925 106 SVFG--GC-MPCR-------ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 175 (475)
Q Consensus 106 ~~~~--~~-~p~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g 175 (475)
+.+. .. .+.. +....+.+...+.. .+.+++.+...++..+++.+.++ +++|+++.+..+....+|
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~p-~~~~G~v~g~~~~~~~~~ 382 (1140)
T PRK06814 308 LAFASSSVPAEPAQLKSILVFLSKRHGWRILIDL----FGLAAAGGLYIVPLFAALQAWAN-PAHRARVIAANNVLNAAF 382 (1140)
T ss_pred HHhcccccccccccccchhhhhcccccHHHHHHH----HHHHHHHHHhHHHHHHHHHhhCC-cccceeeeHHHHHHHHHH
Confidence 2220 00 0000 00001112211222 25677778888888899989887 789999999999988888
Q ss_pred HHHHHHHHHHHH
Q 011925 176 NLSLYAIAFIVF 187 (475)
Q Consensus 176 ~~~~~~~~~~l~ 187 (475)
..+++.+.+.+.
T Consensus 383 ~~ig~~~~g~l~ 394 (1140)
T PRK06814 383 MVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHH
Confidence 888777766654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-06 Score=79.97 Aligned_cols=145 Identities=9% Similarity=-0.070 Sum_probs=91.4
Q ss_pred ceehccccchhHHHHHHHHHHHHHHHHHHc---CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~---g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
......+..|...........+++.|++|. |+++.+.+...+.+.....++..+.+++.||+|+||. +..+.+...
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~-l~~~~~l~~ 219 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY-LAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHHH
Confidence 344444555555556667788999999863 8999999999999999999999999999999999886 444444444
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
+...+... .+ .. ....... +.+++.+...+...++..+..+ ++.+...++. ....+|+.+.|.
T Consensus 220 ~~~~l~~~--~~-------~~-~~~~~~~----l~g~~~s~i~P~~~s~a~~~~~--~~~~~asai~-~~~~~Gg~i~P~ 282 (310)
T TIGR01272 220 LLSIGAAL--TH-------GY-VAMWFVL----ALGLFNSIMFPTIFSLALNALG--RHTSQGSGIL-CLAIVGGAIVPL 282 (310)
T ss_pred HHHHHHHH--cC-------CH-HHHHHHH----HHHHHHHHHHHHHHHHHHhhhh--hhhhhhHHHH-HHHHhcchHHHH
Confidence 44332221 01 11 1111111 4667777777766666665543 2334444443 444566666555
Q ss_pred HHHHHH
Q 011925 182 IAFIVF 187 (475)
Q Consensus 182 ~~~~l~ 187 (475)
+.+.+.
T Consensus 283 l~G~la 288 (310)
T TIGR01272 283 LQGSLA 288 (310)
T ss_pred HHHHHH
Confidence 554443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-05 Score=79.30 Aligned_cols=127 Identities=10% Similarity=0.094 Sum_probs=83.2
Q ss_pred hHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 011925 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVL 348 (475)
Q Consensus 270 ~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (475)
...+|.. .++.|.+..+.++......++..++.+..+++ +|++| |+.+.........+ ...... ..+.+.+++.
T Consensus 11 ~~~lp~i-~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~gr--r~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~ 85 (368)
T TIGR00903 11 SPVLSLV-AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFK--RWFLFGSLATFAAA-AGRLLD-PFNYEWLLAC 85 (368)
T ss_pred HhhHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHH-HHHHHH-hccHHHHHHH
Confidence 3334444 55678888888888777778888888877765 55543 44443333333232 222222 1366677788
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 349 AIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 349 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.++.|++.+...+ ......+..|++++| ...++......+|..+++.+...+.
T Consensus 86 R~l~G~g~~~~~~-~~~~~~~~~~~~~r~--~a~~~~~~~~~lG~~l~~~~~~~l~ 138 (368)
T TIGR00903 86 QLLAALGQPFLLN-AFAPAASQIREERRD--LVISLLSFAMYLGIIFALAAGLKIY 138 (368)
T ss_pred HHHHHhHhHHHHH-HHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999986443 333345667788888 8888888888899998877766654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-05 Score=79.49 Aligned_cols=122 Identities=11% Similarity=0.131 Sum_probs=84.0
Q ss_pred HhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 011925 277 VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIA 355 (475)
Q Consensus 277 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 355 (475)
+.++.+.+..+.+.......++..++.+..+++ +|+++ |+.+..+..+..++.....+. ++.+.+++..++.|++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr--r~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~Gi~ 117 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGR--RPVLITGALIFTLACAATLFT--TSMTQFLIARFIQGTS 117 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCc--hHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 455678877777766677777778888877765 55554 677777777777766655553 3666667778888988
Q ss_pred HHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 356 NALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.+...+.......+..++++.+ ...+..+....++..+|+.+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 118 ICFIATVGYVTVQEAFGQTKGI--KLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred HHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765555555566666776666 6677777777788877776655543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-06 Score=85.18 Aligned_cols=149 Identities=12% Similarity=-0.011 Sum_probs=85.7
Q ss_pred HHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHH
Q 011925 51 LTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYC 130 (475)
Q Consensus 51 ~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 130 (475)
..+.+.+... ...+..+......++.++++||+|||+.. ..+.+..+++.+++.. .| ....+.......
T Consensus 350 ~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~grr~~~-~~~~~~~~~~~l~~~~--~~-----~~~~~~~~~~~~ 418 (505)
T TIGR00898 350 LGNLGGNIYL---DLFISGLVELPAKLITLLLIDRLGRRYTM-AASLLLAGVALLLLLF--VP-----VDLYFLRTALAV 418 (505)
T ss_pred ccccCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHHH--cC-----CCchHHHHHHHH
Confidence 3334555433 33344566677888999999999998874 4445444444433321 12 111111111111
Q ss_pred HHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHH
Q 011925 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI 210 (475)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 210 (475)
+.+.+.+.......++.+|..| ++.|++..++.+....+|.++++.+.+ +. ..++...+.+.+
T Consensus 419 ----~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-----------~~~~~~~~~~~~ 481 (505)
T TIGR00898 419 ----LGKFGITSAFQMVYLYTAELYP-TVVRNLGVGVCSTMARVGSIISPFLVY-LG-----------EKWLFLPLVLFG 481 (505)
T ss_pred ----HHHHHHHHHHHHHHHHhccccc-HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-----------HHHHhhHHHHHH
Confidence 3334444444455667788876 778999999988888888888776655 21 234555666665
Q ss_pred HHHHHHHHHHhhcccccc
Q 011925 211 FIGCCFVGIFLSRTEEPR 228 (475)
Q Consensus 211 ~~~~i~~~~~~~~~~e~~ 228 (475)
...++..++. ...||++
T Consensus 482 ~~~~~~~~~~-~~lpet~ 498 (505)
T TIGR00898 482 GLALLAGILT-LFLPETK 498 (505)
T ss_pred HHHHHHHHHH-HcCcCCC
Confidence 5555554444 3456754
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.6e-06 Score=81.31 Aligned_cols=168 Identities=17% Similarity=0.104 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccch
Q 011925 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (475)
Q Consensus 43 ~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 122 (475)
+..|...++++.|++..+.-++-....+...+...+...+.||.|||+. ++.+...+.+...++.. .........
T Consensus 289 i~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL-ll~~~~~~~~~~~~~~~---~~~l~~~~~- 363 (485)
T KOG0569|consen 289 IFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL-LLISLSLMAVALLLMSI---ALFLSNSFG- 363 (485)
T ss_pred eHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHH---HHHHHHHhh-
Confidence 4456666667779999999999999999999999999999999998765 55555555554333321 100111111
Q ss_pred hhhhHHHHHHH--HHHHHHHhHhHhhh-hhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchH
Q 011925 123 KVETISYCVFA--AIFNVGWAATQVAH-MSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (475)
Q Consensus 123 ~~~~~~~~~~~--~l~~~~~~~~~~~~-~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
....|..+. +++..+++....|. .-+.+|+.+ ++.|..+.++......+...+.....+++-+.++
T Consensus 364 --~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~-~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------- 432 (485)
T KOG0569|consen 364 --SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP-QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------- 432 (485)
T ss_pred --hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 111221111 13344444332332 345788886 7889999999888888888887777777765442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 011925 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 229 (475)
+ +.++.+.+..+++.+..++.+||++.
T Consensus 433 -~--~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 433 -P--YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred -c--hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 2 44555666777777888899999753
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3e-07 Score=88.49 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=95.0
Q ss_pred HhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 011925 277 VINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIAN 356 (475)
Q Consensus 277 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~ 356 (475)
+++..|.+....+++..+..+...+.+|+.+.+++..+| |+++.+|.++...+.+...+. +.+|.+.++-.+.|+|.
T Consensus 59 v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR-~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiGe 135 (493)
T KOG1330|consen 59 VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNR-KRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGIGE 135 (493)
T ss_pred HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCc-ceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccch
Confidence 556678888877888888777888888887766333333 677888888888877666664 58888899999999999
Q ss_pred HHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHH
Q 011925 357 ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVY 398 (475)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~ 398 (475)
+...+...++.++.+++.+++ ..+++.+++..+|.++|-.
T Consensus 136 As~~~ia~s~IaD~f~~~~Rs--~~~~ify~~ipvGsglG~v 175 (493)
T KOG1330|consen 136 ASYSPIAPSLIADSFPDDKRS--RVLGIFYFAIPVGSGLGYV 175 (493)
T ss_pred hhhcccchhHhhhcCcchhhh--HHHHHhhhhcccccceeEE
Confidence 999999999999999999999 8999999999998866643
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.7e-06 Score=87.31 Aligned_cols=126 Identities=12% Similarity=0.106 Sum_probs=93.2
Q ss_pred HHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC---------------
Q 011925 275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP--------------- 338 (475)
Q Consensus 275 ~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~--------------- 338 (475)
.-++++.+++..+.+++.....++.+++.++.+++ +|.+| ||.+.++.++++++.++..+.+
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r--~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~ 134 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHR--PIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST 134 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCc--ceEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence 34566788988888888888888888888877665 33333 5677777777777765544321
Q ss_pred -------------C--------------------c-hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH
Q 011925 339 -------------M--------------------N-MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT 384 (475)
Q Consensus 339 -------------~--------------------~-~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 384 (475)
. + ....+++..++.|+|.+...+....+..+..++++++ .+.++
T Consensus 135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~--~~~~i 212 (633)
T TIGR00805 135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP--LYIGI 212 (633)
T ss_pred ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH--HHHHH
Confidence 0 0 1234456788999999999999999999999999999 88888
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 011925 385 LSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 385 ~~~~~~ig~~ig~~l~~~~~ 404 (475)
......+|..+|+.+.+.+.
T Consensus 213 ~~~~~~iG~~lG~llgg~l~ 232 (633)
T TIGR00805 213 LESIAVFGPAFGYLLGSFCL 232 (633)
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 88888888888877766543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=81.18 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=90.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcC
Q 011925 31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (475)
Q Consensus 31 ~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~ 109 (475)
...+.............++|.++. +. +...+.+.....+...+..|++++++||+||||.+.... +..++.....+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~-~~~~~~~~~~~~ 313 (444)
T PRK09669 236 IFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTI-VAFVILSALIFF 313 (444)
T ss_pred HHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHH
Confidence 333444444444445555555555 43 344555666677777888999999999999999865443 333322222221
Q ss_pred CccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCC-c-----cchhhHhhHHHHHHHHHHHHHHHHH
Q 011925 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-S-----TSRVVLTSCRNAFTMVANLSLYAIA 183 (475)
Q Consensus 110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~-~-----~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (475)
.| ..+.+...+. ..+.+++.+...+...++++|..+. + ++.+...+.......+|..+++.++
T Consensus 314 --~~-----~~~~~~~~~~----~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 314 --IP-----PSNVWLIFAL----NILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred --hC-----cchHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122211111 1257778887777888898887642 1 1224466777778889999999888
Q ss_pred HHHHHhhcc
Q 011925 184 FIVFSVSTA 192 (475)
Q Consensus 184 ~~l~~~~~~ 192 (475)
+.+++..+.
T Consensus 383 g~ll~~~Gy 391 (444)
T PRK09669 383 GWILAWVDY 391 (444)
T ss_pred HHHHHHcCC
Confidence 888876654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.5e-06 Score=81.60 Aligned_cols=184 Identities=16% Similarity=0.095 Sum_probs=109.1
Q ss_pred CCCccce------ehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCC----
Q 011925 20 PVGRWSV------LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH---- 88 (475)
Q Consensus 20 ~~~~~~~------~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Gr---- 88 (475)
+.++++. +..-+.+++.+....+...|+|.|++|+ |++..+.|+..++-.+...+...+.|.++||.-+
T Consensus 248 ~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls 327 (466)
T KOG2532|consen 248 PVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILS 327 (466)
T ss_pred CCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 5555543 5677788888999999999999999998 9999999999999999999999999999998544
Q ss_pred ----cchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhH
Q 011925 89 ----FKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVL 164 (475)
Q Consensus 89 ----r~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~ 164 (475)
||.+=..+....++.+ +. ++ .......+...+.+.+...+.+...+....... +. .|+.-+.+
T Consensus 328 ~t~~rkifn~i~~~~~ai~l--~~---l~--~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~----~~--apq~a~~l 394 (466)
T KOG2532|consen 328 ETTVRKIFNTIAFGGPAVFL--LV---LA--FTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ----DI--APQHAGFV 394 (466)
T ss_pred hHhHHHHHHhHHHHHHHHHH--He---ee--ecCCCcchHHHHHHHHHHHHcccchhhhHhhhh----hc--cchHHHHH
Confidence 3332222222222222 22 11 111111122222222111112211112211111 11 24455666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011925 165 TSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR 223 (475)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 223 (475)
.+..+....+..++++.+.+.+.. .+....|++.|++.+++.++..++..++
T Consensus 395 ~g~~~~~~~~~~~~~P~~vg~~~~-------~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 395 MGIINFVGALAGFIAPLLVGIIVT-------DNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHheeeEeC-------CCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 676666666666665554444331 1146799999999888777666554433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0001 Score=72.66 Aligned_cols=128 Identities=10% Similarity=0.048 Sum_probs=100.2
Q ss_pred hhHHHHHHHhhhcccccch-hhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 011925 269 SQAYLAFYVINDLRMGQSA-KALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMY 346 (475)
Q Consensus 269 ~~~~~~~y~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (475)
...+...|+.++.|+++.+ .+.+......+..+..+..+++ +|++- |+.+.++.+...+...+..+. ++.+.+.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~--K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L~ 119 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRY--KPVLVLQALSFVCVWLLLLLG--TSVWHMQ 119 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3455666888899999988 7877777777777777776665 33333 788888887777776666553 3666778
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 347 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
+.-++.|++.+... ....+....+|+++++ .+.|..+.+..+|..+++.+.+.+
T Consensus 120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~--ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQ--RAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998 7888888888999999 889999999999999998887773
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.6e-05 Score=76.14 Aligned_cols=116 Identities=10% Similarity=0.079 Sum_probs=85.0
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc----hHHHHHHHHHHHHHHHHH
Q 011925 284 GQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN----MSAFMYVLAIFVGIANAL 358 (475)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~g~~~ 358 (475)
+..+.+.+.....++.+++.++.+++ +|++| |+.+.++.++..++..+..+.+.. +.+.+++..++.|++.+.
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr--r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGR--KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhh
Confidence 33444566666777888888887765 44554 667777777777665554443321 145567778899999999
Q ss_pred HHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 359 MMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
..+....+..+..|++.+| ...++......+|..+++.+...+
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRG--AMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred hhHHHHHHHHHhcChhhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 888888888888888887765543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.1e-05 Score=78.76 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=97.1
Q ss_pred ehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHH
Q 011925 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (475)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~ 106 (475)
..+....+...........+.++|.+...-+....+.+.++..+...+..|++++++||+||||.++... ...+++.+.
T Consensus 234 ~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~-~~~~~~~~~ 312 (473)
T PRK10429 234 SCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGAS-IFPVLSCGV 312 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHH
Confidence 3444445555566666666766666665335667788888877888999999999999999999865433 333333222
Q ss_pred hcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCc------cchhhHhhHHHHHHHHHHHHHH
Q 011925 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVANLSLY 180 (475)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~~~g~~~~~ 180 (475)
.+. .. .......+...+. ..+.+++.+.......++++|..+.. ++.+...+.......+|..+++
T Consensus 313 ~~~--~~--~~~~~~~~~~~i~----~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~ 384 (473)
T PRK10429 313 LLL--MG--LAAPHNALLIVIA----GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA 384 (473)
T ss_pred HHH--Hh--ccCchhHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence 220 00 0011112211111 12566777777777788888876421 1224467888888888988888
Q ss_pred HHHHHHHHhhc
Q 011925 181 AIAFIVFSVST 191 (475)
Q Consensus 181 ~~~~~l~~~~~ 191 (475)
.+.+.++...+
T Consensus 385 ~i~g~~l~~~G 395 (473)
T PRK10429 385 FFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHcC
Confidence 88888876654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-05 Score=63.60 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCC
Q 011925 296 YICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGED 374 (475)
Q Consensus 296 ~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~ 374 (475)
.++.+++.+..+++ +|.++ |+.+..+.....++....... ++.+...+..++.|++.+...+....+..+..+++
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGR--KPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred hhHHHHHHhhHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44566667666654 44443 566666666666655544443 35566667778899999888888888888888888
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 375 LSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 375 ~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+++ ...++.+....+|..+++.+.+.+.
T Consensus 84 ~~~--~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 84 ERG--VALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred hhh--HHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 888 8889999999999999998887765
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.5e-05 Score=72.09 Aligned_cols=128 Identities=9% Similarity=0.044 Sum_probs=79.2
Q ss_pred HHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHH-----hhhhHHHHHHHHHHHHHHHHHHhhcCC-chHH
Q 011925 271 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT-----GQRLKAYYSAGGVLWVFCGAGILILPM-NMSA 343 (475)
Q Consensus 271 ~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~r~k~~~~~~~~~~~~~~~~~~~~~~-~~~~ 343 (475)
.-.|.+.+ +.|++.++.+..... .+...+ .++.+++ +|. +|| |..+..+.....++...+.+.+. .+.+
T Consensus 9 ~~~~~~~~-~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr-~~~l~~~~~~~~~~~~~l~~~~~~~~l~ 84 (356)
T TIGR00901 9 NTLPYWLR-SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRR-RSWLVLTQVLLLSLLLILSFLVPSTDLP 84 (356)
T ss_pred hHHHHHHH-HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCcc-HHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 34555555 458988887766433 222222 4555553 554 332 33455566665555444444432 3444
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 344 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.+....++.+++.+...+...++..+..++++++ ...+....+..+|..+++.+.+.+.
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELG--YGSTIYIVGYRAGMLLSGSLALVLA 143 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhc--hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666777766677777788888888888 7888888888888888887776554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00017 Score=68.92 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=88.7
Q ss_pred HhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-CchHHH
Q 011925 267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MNMSAF 344 (475)
Q Consensus 267 ~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 344 (475)
...+--+.+.+++..+++..+++++......+-++.++..+++ +|++. |+.+..|+.+++++..+++-.. ..++..
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gy--k~gi~lgL~l~avg~~lF~pAa~~~~y~~ 106 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGY--KAGIVLGLLLYAVGAALFWPAASSKSYGF 106 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhh--HHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3444556666778889998888888887777777777776664 55555 7889999999999866553222 334556
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 345 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 345 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
++...++.+.|.+......+.+....-+++... .-.++......+|+.++|.+.+.+
T Consensus 107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~--~rlnl~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 107 FLVALFILASGIGLLETAANPYVTLLGKPESAA--FRLNLAQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HHHHHHHHHhhhHHHHhccchHHHHhCCchhHH--HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666778889999998888888877775554333 223333334445555555554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00022 Score=71.58 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HH----HhhhhHHHHHH-HHHHHHHH
Q 011925 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AW----TGQRLKAYYSA-GGVLWVFC 330 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~r~k~~~~~-~~~~~~~~ 330 (475)
...+..++.+.....+.+.|+ +.+|.++...+.+.....+..++..++.|.+ +| ++| ||.+++ +....+++
T Consensus 11 ~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR--Rrp~il~g~~~~~~~ 87 (477)
T TIGR01301 11 SVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR--RRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC--hHHHHHHHHHHHHHH
Confidence 344445566666777788876 4578888877777777677777777777665 32 444 454444 45555555
Q ss_pred HHHHhhcCC------------chH---HHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHH
Q 011925 331 GAGILILPM------------NMS---AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGI 395 (475)
Q Consensus 331 ~~~~~~~~~------------~~~---~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~i 395 (475)
..++.+.+. +.. +...+...+..++.....+...++..+.+|++++..+..++..+....+|+.+
T Consensus 88 l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il 167 (477)
T TIGR01301 88 VILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL 167 (477)
T ss_pred HHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 555444321 011 12222333455677777777788888888776542226788888888888888
Q ss_pred HHHHHHH
Q 011925 396 AVYVLQS 402 (475)
Q Consensus 396 g~~l~~~ 402 (475)
|..+-+.
T Consensus 168 g~~~g~~ 174 (477)
T TIGR01301 168 GYAAGAY 174 (477)
T ss_pred HHHHHHH
Confidence 8765543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.4e-05 Score=72.15 Aligned_cols=134 Identities=11% Similarity=0.051 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCc
Q 011925 41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (475)
Q Consensus 41 ~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 119 (475)
+.+..+-..|-.+. |+|..++.++....++..+++..++|+|.||+|.|++.+....+........++. ..
T Consensus 269 ~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-------~~- 340 (438)
T COG2270 269 NTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-------EG- 340 (438)
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-------cc-
Confidence 44445666777755 9999999999999999999999999999999999887554444444444443331 11
Q ss_pred cchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (475)
+ ..+..+. .+.+...+..+....++..++.| ++|.++..++.......++.+++.+.+.+...
T Consensus 341 -~--~~f~i~g---ll~g~s~G~~qA~SRSy~~~lvp-~~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 341 -E--LDFWILG---LLVGTSLGGAQASSRSYLARLVP-KGKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred -c--HHHHHHH---HHHHHhcchHHHHHHHHHHHhCC-CccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 1 1111221 25677777777788888999987 56678888888888888888888777666554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-05 Score=75.60 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=108.8
Q ss_pred cceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHH
Q 011925 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (475)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~ 102 (475)
|......+..+.......+.++...+|.+.. |.+.......+........++.+++.++++|+||||.|.+. .++.++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~-~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIG-LLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHH-HHHHHH
Confidence 3344555566677777788888888888887 98988888888888888888899999999999999997655 555555
Q ss_pred HHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCc------cchhhHhhHHHHHHHHHH
Q 011925 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVAN 176 (475)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~~~g~ 176 (475)
+...++. .| ....... +... ++.++|.+..+.-.+++++|..+-. ++.|...+......-+|.
T Consensus 315 ~~~~~~f--~~-----~~~~~l~-~~~~---~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ 383 (467)
T COG2211 315 GYLLLYF--TP-----AGSVVLI-VVAL---IIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGL 383 (467)
T ss_pred HHHHHHh--hc-----CcchHHH-HHHH---HHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 5555542 22 1222222 2221 2677888888888889998876421 111445566667777888
Q ss_pred HHHHHHHHHHHHhhcc
Q 011925 177 LSLYAIAFIVFSVSTA 192 (475)
Q Consensus 177 ~~~~~~~~~l~~~~~~ 192 (475)
.++..+.+..++..+.
T Consensus 384 ala~~~~g~~L~~~Gy 399 (467)
T COG2211 384 ALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8888777777776553
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0011 Score=68.25 Aligned_cols=128 Identities=5% Similarity=0.011 Sum_probs=81.5
Q ss_pred hhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC----CchH
Q 011925 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP----MNMS 342 (475)
Q Consensus 268 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~----~~~~ 342 (475)
....+.+ .+.+++|+++.+.+.+..+....+ ...+..|++ +|+++ |+.+.++.++..++.++..+.. ..+.
T Consensus 45 ~fsv~s~-~L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~--R~vllig~ll~~iG~ll~ala~~~~i~~s~ 120 (591)
T PTZ00207 45 AFNLISG-AMQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGP--RPIFVLSMTVFCLGTLLFALTFQEVIEGSV 120 (591)
T ss_pred HHHHHHH-HHHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence 3334334 567788998887765544322111 223334443 33333 7788888888888877666541 1356
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 343 AFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 343 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
+.+.+...+.|+|.+...+.......+.+| +++| .+.|+......+|+++.+.+...
T Consensus 121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG--~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG--AVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888999988777665555555565 5568 88998888888888865554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.005 Score=60.70 Aligned_cols=151 Identities=9% Similarity=0.113 Sum_probs=76.3
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhh--------
Q 011925 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQR-------- 315 (475)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-------- 315 (475)
.+++|.|+...+.+..+....++.....-...=+.+ .|++....+....+..-..++.++..+++.+ +++
T Consensus 272 ~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li~~P~qii~~~~~~Kws~-g~~P~~~~~~~ 349 (544)
T PF13000_consen 272 WKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLIDFPFQIILPYYIGKWSA-GSPPLDVDNKA 349 (544)
T ss_pred HHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHHhhhHHHHHHHHhhhhhc-CCCcccccccc
Confidence 456677877777766666666655443333323333 4888776665544444445555555554421 111
Q ss_pred h-------H------------HHHHHHHHH----HHHHHHHHhhcCCc---hHHHHHH---HHHHHHHHHHHHHHhHhhh
Q 011925 316 L-------K------------AYYSAGGVL----WVFCGAGILILPMN---MSAFMYV---LAIFVGIANALMMVTGISM 366 (475)
Q Consensus 316 ~-------k------------~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~---~~~l~g~g~~~~~~~~~~~ 366 (475)
. | +....+... ..++.......|.+ +.+.+.+ ..++..+..-..+....+.
T Consensus 350 l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AF 429 (544)
T PF13000_consen 350 LPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAF 429 (544)
T ss_pred ccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 111122211 11111111222311 1222221 2223444444455566666
Q ss_pred hhhhccCCCccchhhhhHHHHHHHHHHHHHHH
Q 011925 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVY 398 (475)
Q Consensus 367 ~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~ 398 (475)
.....++.--| +++.+.|...++|+-.-..
T Consensus 430 harISDP~IGG--TYMTLLNTvSNLGGtWP~~ 459 (544)
T PF13000_consen 430 HARISDPAIGG--TYMTLLNTVSNLGGTWPRT 459 (544)
T ss_pred HhhccCcccch--HHHHHHHHHHhcCCCchHH
Confidence 77777777777 9999999999998765543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.7e-05 Score=73.59 Aligned_cols=154 Identities=13% Similarity=0.096 Sum_probs=98.1
Q ss_pred HHhch-hHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcc----cccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh---H
Q 011925 246 WFKKI-LYYQVALVYMLTRLVVNVSQAYLAFYVINDLR----MGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL---K 317 (475)
Q Consensus 246 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---k 317 (475)
.+++| .++.++..-+.-.+.++++-..+..|+....+ ++++++.-....+..---+..++.|++ +||. |
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~l---aDr~LG~~ 92 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWL---ADRVLGTR 92 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHH---HHHhcchh
Confidence 35554 45666667777788888888888888877666 877654332222211111222333333 4444 7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhh----ccCCCccchhhhhHHHHHHHHHH
Q 011925 318 AYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVL----VGEDLSGCAFVCGTLSFLDKMSC 393 (475)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~ig~ 393 (475)
|++..|.++++++.+.+..........+++.+.+..+|.|.+=++...+..+. -|+|..| +++.-++.++|+
T Consensus 93 ~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~g----Ft~fY~~iNiGs 168 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG----FTLFYMGINIGS 168 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCC----ccEEEEEeehHH
Confidence 88999999999998877664312344556777788899998877777766554 2333444 445555667888
Q ss_pred HHHHHHHHHhccc
Q 011925 394 GIAVYVLQSYQSM 406 (475)
Q Consensus 394 ~ig~~l~~~~~~~ 406 (475)
.+++.+.+.+..+
T Consensus 169 l~~p~i~~~~~~~ 181 (498)
T COG3104 169 LIAPIITGLLAIN 181 (498)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777643
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-05 Score=77.35 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=108.8
Q ss_pred cceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHH-HHHH
Q 011925 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV-LVAV 102 (475)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~-~~~~ 102 (475)
+..+.++++.....+.+.....++|.|.++.|.+..+.+.++++..+.+.++.++.|+++|+...++.++....+ ..++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 445678888777777788888899999998899999999999999999999999999999998865554443333 3333
Q ss_pred HHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHH
Q 011925 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (475)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (475)
+. ++ .| . ..+. +.++.+-+ +++.+.+....-..-...++.. .++-..+.++......++.++++.+
T Consensus 378 ~~--~~---~p--~--~~~~-~~l~~~~~---~fG~~~g~~~~l~~~i~~~~~g-~~~l~~a~Gl~l~~~gi~~l~gpPi 443 (509)
T KOG2504|consen 378 AR--LF---LP--F--ATTY-VGLIVFSI---LFGFCVGSFSSLTPVILVDLVG-LEKLSNAYGLLLLFQGIGALVGPPI 443 (509)
T ss_pred HH--HH---HH--H--hccH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHcC-hhhcchHHHHHHHHhHHHHHcCccc
Confidence 32 22 23 1 1122 22233332 4555444433222234455553 5566777888878777777776555
Q ss_pred HHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHH
Q 011925 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGI 219 (475)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 219 (475)
++.+.. ....|...++..++..++...+
T Consensus 444 ag~~~d---------~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 444 AGLLYD---------ITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred ceeeee---------ccCCeeeehhhcChHHHHHHHH
Confidence 442221 1223666676666555444433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.4e-05 Score=71.34 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=81.4
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 011925 283 MGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMV 361 (475)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 361 (475)
.+..+.++++..-.+.+++.+++.|++ +|++. |..+++|++.+....+++.+. ++++..++.-.+.|+|.+....
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy--~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGY--KIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhcc--ccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHHHHh
Confidence 344567777777778888888887764 44444 678899999998887777774 4667778889999999999999
Q ss_pred hHhhhhhhhccCCCc-cchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 362 TGISMQNVLVGEDLS-GCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 362 ~~~~~~~~~~~~~~~-G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
...++..+.++++.+ | .++|+.--+..+|-.+|+.+-+.
T Consensus 179 sglamlAd~f~~d~er~--~vmGialgfislG~lvgPpfGGi 218 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERG--SVMGIALGFISLGVLVGPPFGGI 218 (464)
T ss_pred hhHHHHHHHcccchhhh--HHHHHHHHHHhccceecCCcccc
Confidence 999998888777664 6 45554444444444444443333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0088 Score=58.27 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHH
Q 011925 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVL 400 (475)
Q Consensus 341 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~ 400 (475)
+.|.+++.++.-|+..|..+.++.....+..+++++. +..|..++...+|..+++.+.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~RE--Fslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDRE--FSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHhhHHHHHHHHHH
Confidence 6677777788889988888888877777777777777 888888888888887777654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00049 Score=69.35 Aligned_cols=157 Identities=13% Similarity=0.144 Sum_probs=105.4
Q ss_pred hhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 011925 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIAN 356 (475)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~ 356 (475)
++.++...+.+....+..++-+++.+..+.+ ++|+ .+.+....+...+..++-.. .++.+.++...++.|+..
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L---~~r~~ls~~l~~~~~~w~~~~~~~~~--~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLL---GDRFPLSKGLSVSGILWGLFGFLTAA--VHSFPGLIALRFLLGLFE 148 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHH---HHhCChHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHh
Confidence 5556666667777777777777777765544 5555 33333322222222112222 246777788899999999
Q ss_pred HHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccCCccccCCCcccccccccCCCCCcHHHHHH
Q 011925 357 ALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISV 436 (475)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (475)
+..+|....+...-.+++++| ...+++.....+|+.+|+.+...+....+... ..+
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g--~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~----------------------~~g 204 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERG--LRMGIWYASASLGNIFGGLIAYGVFKLNGSGG----------------------LAG 204 (495)
T ss_pred cccchHHHHHHHhhcChhhhh--hhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC----------------------cCC
Confidence 999999999988888999999 89999999999999999988876432111110 125
Q ss_pred HHHHHhhHhHHHHHHHHHHHhhccCCcc
Q 011925 437 TRFGLGLIPAICSLVSVAVTFTMKLHTP 464 (475)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
.++.+.+-.++....+++++++.|.+.+
T Consensus 205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred ceeehhHHHHHHHHHHheEEEEecCChh
Confidence 5676776666666677777777776544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00021 Score=72.46 Aligned_cols=130 Identities=8% Similarity=-0.027 Sum_probs=91.6
Q ss_pred CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCc--cchhhhhHHHHHH
Q 011925 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST--STLKVETISYCVF 132 (475)
Q Consensus 55 g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~ 132 (475)
|.++.++|.+..+..+...++..+.+++.+|++.|+. +..+.+..+++...... ....+... ....+....-.
T Consensus 284 G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~-l~~~~~l~~~~~~~~~~--l~~~~~~~~gi~~~~~~~~~~-- 358 (468)
T TIGR00788 284 PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL-FGVTTLLYTLSSLFDLI--LVKRWNLAFGISDEVFVLGDS-- 358 (468)
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHhCcee--eeeccccccCCCCeeeeeehh--
Confidence 9999999999999999999999999999999998887 44455544444322110 00001000 00111111111
Q ss_pred HHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011925 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (475)
Q Consensus 133 ~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (475)
.+.+++.+...+|...++.+.++ +++++...+......++|..+++.+++.+.+.++
T Consensus 359 -~l~~~~~g~~~~~~~~~~~~~~p-~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 359 -IIAEVLAQLKFMPFLVLLARLCP-SGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred -HHHHHHHHHHHccHHHHHHHhCC-CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 25677788888899999999987 7788888888888899999999988888887765
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00061 Score=68.94 Aligned_cols=145 Identities=6% Similarity=0.027 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhh---HHHHHHHHHHHHH
Q 011925 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL---KAYYSAGGVLWVF 329 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~---k~~~~~~~~~~~~ 329 (475)
...+..+..+........|+..|..+..|+++..++.+..+.-+.-.+.-|+.|.+ +|...|+ |+.+.++.+.+++
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i 92 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI 92 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence 33344445556666778899999999999999888877777666677777877765 3322222 4566677777777
Q ss_pred HHHHHhhcCCch----HHHHHHHHHHHHHHHHHHHHhHhhhhhhhcc-CCCccchhhhhHHHHHHHHHHHHHHHHH
Q 011925 330 CGAGILILPMNM----SAFMYVLAIFVGIANALMMVTGISMQNVLVG-EDLSGCAFVCGTLSFLDKMSCGIAVYVL 400 (475)
Q Consensus 330 ~~~~~~~~~~~~----~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~-~~~~G~~~~~~~~~~~~~ig~~ig~~l~ 400 (475)
...+++..|..+ ..+..+...+..+++......-.++..+.++ .+++. ...+....+..+|..+++.+.
T Consensus 93 ~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt--~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 93 VCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRI--SLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 666555444211 2334445556677777666555556555543 34444 667777777777777665553
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00072 Score=61.64 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCcc--ch
Q 011925 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS--TL 122 (475)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~ 122 (475)
.|-|..-++.|+|..+...+-....+...+ .++.|.+.||+|+|.. +..|.....+++..++.. ..... ..
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~-l~iG~~~~~~GY~~~~l~-----~~~~i~~~~ 95 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVV-LLIGAVLGFVGYGLLWLA-----VSGRIPSLP 95 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHH-----HhCccCccc
Confidence 344444444599999999999999999876 6899999999999766 667777777777666531 11111 12
Q ss_pred hhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHH
Q 011925 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (475)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (475)
.|....+.. +.+.+.+..+........+. -|++||++.++.-....+++.+-..+
T Consensus 96 ~~~~~~~~~---l~~~s~~~~~ta~lvt~~~N--FP~~RG~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 96 VWLMCLFLF---LGGNSSCWFNTASLVTCVRN--FPRSRGTVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred hHHHHHHHH---HHcccHHHhhhHHHHHHHHh--CccccCceehhhhHHHHhHHHHHHHH
Confidence 222222221 23333333333322111122 26789999998877777766654433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0029 Score=64.97 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=71.2
Q ss_pred HHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 011925 275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI 354 (475)
Q Consensus 275 ~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 354 (475)
.+..++.|-++. ..++.....++..+..++.+++.++..| |..++.+.++..++.+...-. ++...++....+.|+
T Consensus 68 ~~I~~diG~~~~-~~w~~~~~~l~~av~~~~~G~LSDlfGR-r~~~i~g~~l~vvG~Iv~atA--~~~~~~iag~~l~Gv 143 (599)
T PF06609_consen 68 PYINADIGGSDN-WSWFSTAWTLASAVSFPFVGRLSDLFGR-RYFFIIGSLLGVVGSIVCATA--QNMNTFIAGMVLYGV 143 (599)
T ss_pred HHHHHhcCCCcc-chHHHHHHHHHHHHHHHhhHHHHHHhcc-hHHHHHHHHHHHhHHHHhhcC--CcHHHHHHHHHHHHH
Confidence 455566666543 3456666666777777766555332222 556667777777776655443 354556677889999
Q ss_pred HHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 355 ANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 355 g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
|.|..... ....++..|.|.++ ...++.....-.....++.+...+
T Consensus 144 gaG~~~~~-~~~isEl~p~k~R~--~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 144 GAGVQELA-ALAISELVPNKWRG--LGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred hhHHHHHH-HHHHHHhcccchhh--hHhHHHHHHHHhhhcccHHHHHHh
Confidence 87766543 33356777888888 444444443333333455554444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0016 Score=63.37 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=85.0
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcC-Cc----hHHHHHHHHHHHHHHH
Q 011925 283 MGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILP-MN----MSAFMYVLAIFVGIAN 356 (475)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~g~g~ 356 (475)
+++...+.+..+..++.+.|.++.|++ ++++| |+..-..+++++++.++..+.. .+ -.+++...-++.|+|.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR--K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR--KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence 455555677777788899999888876 44455 6666667777777665433321 11 1234455677999999
Q ss_pred HHHHHhHhhhhhhhccCCCcc--chhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 357 ALMMVTGISMQNVLVGEDLSG--CAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
|.-+|......++...++.+| .+.++++++++...|+.++..+...+-
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe 208 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE 208 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh
Confidence 999999999999998999999 467777788887777777766666654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.023 Score=53.06 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCh--hHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHH-HHHhcCCccCC
Q 011925 38 ITAACWFTYLLLFLTDIGLSP--RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-FSSVFGGCMPC 114 (475)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~s~--~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~-~~~~~~~~~p~ 114 (475)
.........++.+..+.+.+. ...+++.+...+...+..++.|+++||+|||+.++ .+......+ ....+. +
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~---~- 90 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLI-IGLLLFLLGTLLLALA---P- 90 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHH-HHHHHHHHHHHHHHhC---c-
Confidence 444455556777777775555 58999999999999999999999999999986643 333322232 222221 1
Q ss_pred ccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHH-HHHHHHHHHHHHHHHHHHhhccC
Q 011925 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAK 193 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~~ 193 (475)
. ...+.....+. ..+++.+...+...++..+..++.++|+...+.... ...+|..+++.++..+...
T Consensus 91 ----~-~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (338)
T COG0477 91 ----N-VGLALLLILRL---LQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---- 158 (338)
T ss_pred ----c-chHHHHHHHHH---HHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1 11222222221 356666666777778888886530367777766666 4556666666444444332
Q ss_pred CccchHHHHHHHHHHHHHHH
Q 011925 194 THADLENQYRWIAYSSIFIG 213 (475)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~ 213 (475)
...+|+..+.......
T Consensus 159 ----~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 159 ----LLWGWRAAFLLAALLG 174 (338)
T ss_pred ----HhcchHHHHHHHHHHH
Confidence 1347888665554444
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0029 Score=59.21 Aligned_cols=242 Identities=12% Similarity=0.055 Sum_probs=125.3
Q ss_pred hHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 011925 141 AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (475)
Q Consensus 141 ~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (475)
++.+++|.+.+=...+ ++++.+..+...+....|-..+..++..+++. ....++..-.+......+...+.
T Consensus 109 tAaEIAYysYIYs~Vd-~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~--------~~~sy~~LN~ISL~~~~ia~~~A 179 (433)
T KOG3810|consen 109 TAAEIAYYSYIYSKVD-PEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL--------ETLSYTTLNYISLAEVTIAVLLA 179 (433)
T ss_pred HHHHHhhhheeeeecC-HHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh--------cccchhhhchhhHHHHHHHHHHH
Confidence 4667888888777664 88888999988888888888888888777754 23455555444433333333333
Q ss_pred hhccccccc------ccc-------c-CCCcch-----------HHHHHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHH
Q 011925 221 LSRTEEPRL------KMG-------L-RGNSHA-----------RISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (475)
Q Consensus 221 ~~~~~e~~~------~~~-------~-~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
.+..+.++. +.+ + ..+.+. .+.+++..+||+.....+-..+...+++.... +..
T Consensus 180 ~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~n-Y~Q 258 (433)
T KOG3810|consen 180 LFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTN-YTQ 258 (433)
T ss_pred hhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHH-HHH
Confidence 322211110 000 0 001111 12334455677655554444444434443332 233
Q ss_pred HHhhhcccc--cchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 011925 276 YVINDLRMG--QSAKALVPAIIYICSFIVSILLQEMAWTGQRL-KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFV 352 (475)
Q Consensus 276 y~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 352 (475)
.+-+...-. ....|..-.+..+.++++.+..+.++---+|. +.++.++... .+.+++......+.|..+...++.
T Consensus 259 ~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~--~agllf~m~~t~~Iw~~Ya~yvlf 336 (433)
T KOG3810|consen 259 ILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAV--QAGLLFIMAQTQHIWVCYAGYVLF 336 (433)
T ss_pred HHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHH--hhhhhhhhhcccceehhhhhHHHH
Confidence 333332211 11123333344444555566655542112222 2233333222 222233333345677777777787
Q ss_pred HHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHH
Q 011925 353 GIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIA 396 (475)
Q Consensus 353 g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig 396 (475)
..-+....+....-....-++|.-| ..+|+++|..-+-..+-
T Consensus 337 r~~y~l~itiA~~~iA~nL~~e~~g--LvFGiNTFvAl~lQsil 378 (433)
T KOG3810|consen 337 RVIYQLTITIATFQIARNLSSELFG--LVFGINTFVALILQSIL 378 (433)
T ss_pred HhhHhhhhhHHHHHHHHhhhhhhhe--eeeehHHHHHHHHHHhh
Confidence 7766666665555555555667778 99999998766555443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00064 Score=61.12 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=35.0
Q ss_pred HcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchh
Q 011925 53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW 92 (475)
Q Consensus 53 ~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~ 92 (475)
..|+...++|.+...+.-..++...+.|.+.||-||||.-
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac 105 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC 105 (454)
T ss_pred hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccce
Confidence 3488889999998888888889999999999999999963
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.1 Score=52.72 Aligned_cols=213 Identities=12% Similarity=0.098 Sum_probs=104.2
Q ss_pred CCChhHHHHHHHHHHH-HhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCc--cCCcc-----------
Q 011925 55 GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR--ILSTS----------- 120 (475)
Q Consensus 55 g~s~~~~g~i~~i~~l-~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~--~~~~~----------- 120 (475)
...+..+..+=.-..+ ...+...+..+++||++|.|.+-.......+...+..+. ..|.. +.++.
T Consensus 54 ~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~v-lyP~~~~lhp~~~~~~~~~~~~~ 132 (491)
T PF03219_consen 54 AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFV-LYPNRDILHPDAFADKLLAILPP 132 (491)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH-HhhchhhcCCCHHHHHhhhhccc
Confidence 3455566665444444 234457789999999999997654443332222211111 12321 00000
Q ss_pred chhhhhHH-----HHHHHHHHHHHHhHh--HhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 011925 121 TLKVETIS-----YCVFAAIFNVGWAAT--QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (475)
Q Consensus 121 ~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 193 (475)
..-+.... +.+++.... -|+-+ ..-++.+.++.++ .+|-.|..+....+.++|.++++.+...+.......
T Consensus 133 ~~~~~i~~~~~Wt~slfYv~aE-lwgsvvlSlLFW~fAN~itt-~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~ 210 (491)
T PF03219_consen 133 GFKGFIAMFRNWTFSLFYVMAE-LWGSVVLSLLFWGFANEITT-VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKS 210 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00000000 001111111 22222 2335788888886 788888999999999999888777766665511110
Q ss_pred CccchHHHHHHH----HHHHHHHHHHHHHHHh-hc---cccccc------ccccCCCcchHHHHHHHHhchhHHHHHHHH
Q 011925 194 THADLENQYRWI----AYSSIFIGCCFVGIFL-SR---TEEPRL------KMGLRGNSHARISWAYWFKKILYYQVALVY 259 (475)
Q Consensus 194 ~~~~~~~~~~~~----~~~~~~~~~i~~~~~~-~~---~~e~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (475)
. ......|... +.+....+.+...+.. .. .+++.. ++++++|.+.+++++.++|+|....+.+..
T Consensus 211 ~-~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lv 289 (491)
T PF03219_consen 211 L-PAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLV 289 (491)
T ss_pred c-ccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHH
Confidence 0 0012334322 2222222332222221 11 111111 111233445678899999999877766665
Q ss_pred HHHHHHHHhhhH
Q 011925 260 MLTRLVVNVSQA 271 (475)
Q Consensus 260 ~~~~~~~~~~~~ 271 (475)
.+..........
T Consensus 290 i~Ygi~inLvE~ 301 (491)
T PF03219_consen 290 IAYGISINLVEV 301 (491)
T ss_pred HHHHHHHHHHHH
Confidence 555555444433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0023 Score=65.82 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=82.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhh
Q 011925 288 KALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISM 366 (475)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~ 366 (475)
.+++.....+++.++.++.+++ ++++| |+.+.++.+...++.++..+.+ +.+.+++.-++.|+|.|........+
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GR--k~~l~~~~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGR--KKTLLLAVVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhh
Confidence 3677777888899999888876 45555 6788888888888877777654 67777888999999999999888899
Q ss_pred hhhhccCCCccchhhhhHHHHHHHHHHHHH
Q 011925 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIA 396 (475)
Q Consensus 367 ~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig 396 (475)
.++..|.+.+| ...+.......+|..++
T Consensus 167 ~sEiap~~~RG--~l~~~~~l~~~~Gi~~~ 194 (513)
T KOG0254|consen 167 ISEIAPAHIRG--TLVSLYQLFITIGILLG 194 (513)
T ss_pred HhhcCChhhhH--HHHHHHHHHHHHHHHHH
Confidence 99999999999 77776666666666555
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.006 Score=55.68 Aligned_cols=123 Identities=15% Similarity=0.046 Sum_probs=71.5
Q ss_pred HHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcC-----CchHHHH
Q 011925 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP-----MNMSAFM 345 (475)
Q Consensus 273 ~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 345 (475)
+...+++.+|+++++...+.....++..++ ++.|.+ .|+. +..+.+|.+...+++..+.... ..+.|.+
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l---~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~ 99 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLL---YDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM 99 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHH---HHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence 444567788999988777766666666543 444543 4444 5667888888888887665532 1244555
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 346 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 346 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
.+...+.+.+.......+.....+.+| +++| .+.|+.--..-+++++=..+-..
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG--~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRG--TVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccC--ceehhhhHHHHhHHHHHHHHHHH
Confidence 555555656555444433333334455 4678 67775444444444444443333
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0086 Score=54.08 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=55.8
Q ss_pred cchhhHhhHHHHHHHHHHHHHHHHHHHHHH-hhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccccCC
Q 011925 159 TSRVVLTSCRNAFTMVANLSLYAIAFIVFS-VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP--RLKMGLRG 235 (475)
Q Consensus 159 ~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~--~~~~~~~~ 235 (475)
++|+..+.+...+.++|.++..+ +.+++ -.. ......|++.+.+.+++.++-+++...+-+|- ..++++++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~i--pF~~~~~~~----~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~ 75 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNI--PFLISSSVV----IALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQE 75 (267)
T ss_pred CccceeeeeccccchhhHHHHHh--hHHhcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccc
Confidence 56777777777888888777543 23332 000 11345699988887776655554443332221 11111111
Q ss_pred ----CcchHHHHHHHHhchhHHHHHHHHHHH
Q 011925 236 ----NSHARISWAYWFKKILYYQVALVYMLT 262 (475)
Q Consensus 236 ----~~~~~~~~~~l~~~~~~~~~~~~~~~~ 262 (475)
+.+.++..++.+|+|.-|...+.+...
T Consensus 76 k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~w 106 (267)
T PF07672_consen 76 KENSTLSKKPSYKSILKEKETWKWILIYGIW 106 (267)
T ss_pred cccccccccchHHHHHccchHHHHHHHHHHH
Confidence 122456788999999988776665543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=61.77 Aligned_cols=111 Identities=12% Similarity=-0.044 Sum_probs=71.8
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhH
Q 011925 286 SAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTG 363 (475)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 363 (475)
...|++.....+..++.++..|. +.||+ |..+.+++...++.+..+.. .+++..+...-++.|+..|-.. ..
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~---~SD~yGRkpvll~c~~~va~s~ll~~~--S~~F~afv~aR~l~Gi~kgnl~-v~ 141 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGC---LSDRYGRKPVLLACLIGVALSYLLWAL--SRNFAAFVLARFLGGIFKGNLS-VI 141 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhh---hhhhhCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhccCchH-HH
Confidence 34567777777778787777554 45555 55666676666665554444 3465444444778888776443 45
Q ss_pred hhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 364 ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 364 ~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.++..+..++++++ ..++..+....+|-.+||++-+.+.
T Consensus 142 rAiisdV~sek~r~--l~ms~v~~a~~lGfilGPmIGgyla 180 (451)
T KOG2615|consen 142 RAIISDVVSEKYRP--LGMSLVGTAFGLGFILGPMIGGYLA 180 (451)
T ss_pred HHHHHhhcChhhcc--ceeeeeehhhhcchhhcchhhhHHH
Confidence 56677777777787 6667777777777777777665554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.11 Score=51.89 Aligned_cols=57 Identities=9% Similarity=0.169 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHH
Q 011925 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (475)
Q Consensus 341 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l 399 (475)
+.+..++.+++.|+.+|...+.+..+..+..+++++- .+..+.+++-.+|-.+|+.+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e--~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHERE--VAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4455667788999999988777776666655555555 55566667777777776654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00083 Score=63.36 Aligned_cols=136 Identities=9% Similarity=-0.006 Sum_probs=81.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhH
Q 011925 65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ 144 (475)
Q Consensus 65 ~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (475)
+.+..+...=+..+.|++.||+||||. +....+++++..++++. |. .........+ ......+...
T Consensus 387 llitslaefPGlLIt~~iverlGRKkT-Mal~l~~f~iflfll~~-c~-------~rn~~tvllf-----~arafisg~f 452 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKT-MALSLILFGIFLFLLTT-CK-------TRNAYTVLLF-----TARAFISGAF 452 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhH-HHHHHHHHHHHHHHHHH-hc-------CcchhHHHHH-----HHHHHHhchh
Confidence 345556666778899999999999998 66667777776665553 11 1222211111 1122222233
Q ss_pred hhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011925 145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT 224 (475)
Q Consensus 145 ~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 224 (475)
...+.+.+|+.| ..-|+...|.-....-+|+++.+.++... + ..-..+..+.+.+.++..+..+++.
T Consensus 453 qvaYvYtPEVyP-TavRatgvGtcSsmaRIggI~~p~iA~~~-e-----------~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 453 QVAYVYTPEVYP-TAVRATGVGTCSSMARIGGIFSPVIAMRA-E-----------LSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred eEEEEecCcccc-hhhhhcchhhhhhHHhhhhhhhhHHHHHh-c-----------cceeehHHHHHHHHHHHHHHheeee
Confidence 344567888887 67888888888888889998888776211 1 1112233344455555555555655
Q ss_pred ccc
Q 011925 225 EEP 227 (475)
Q Consensus 225 ~e~ 227 (475)
-|+
T Consensus 520 iEt 522 (528)
T KOG0253|consen 520 IET 522 (528)
T ss_pred ecc
Confidence 564
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.032 Score=54.04 Aligned_cols=167 Identities=12% Similarity=0.028 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHHHHHHHHHHHhcCCccCCccCCc
Q 011925 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (475)
Q Consensus 42 ~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr-~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 119 (475)
+--..|-+|--|+ |.|..+...+.........+.-...|++..| .+++| ....+.....+++.++.. +-+ .
T Consensus 226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~-~a~~G~~~~~~~f~lii~-a~~-----~ 298 (403)
T PF03209_consen 226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR-TAALGCLLGALAFALIIL-AGP-----L 298 (403)
T ss_pred hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHHHHHHH-HHh-----c
Confidence 3334555666677 9999999999988888888888899999996 55554 466677666666554431 011 1
Q ss_pred cchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchH
Q 011925 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
.+. +.+..-. .++|++.+...+...+++.+++. +++.+...+.+...+.++..++..+++.+..........+..
T Consensus 299 ~~~-~~~~~~~---~l~G~g~G~f~vgals~mM~lt~-~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~ 373 (403)
T PF03209_consen 299 GSP-WLFRPGV---FLLGLGNGLFTVGALSLMMDLTS-AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPA 373 (403)
T ss_pred ccc-hHHHHHH---HHHHHhhhHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 112 2222111 27888999999998888989886 566788888888888888888888877776543221111245
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011925 200 NQYRWIAYSSIFIGCCFVGIF 220 (475)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~ 220 (475)
.+|...|.+-++..+++.++.
T Consensus 374 ~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 374 LAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 678888877666555544443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.13 Score=49.15 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=50.4
Q ss_pred hhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 011925 279 NDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANA 357 (475)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~ 357 (475)
+..|+++.+.+.+.......+.+.+.+.+.+ +|.+| |+..+..+++..++.+. -. .++.+.+++.-++.|++..
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Gr--k~~cl~~cily~~scl~-k~--~~~~~~L~~GRvlgGiaTS 136 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGR--KKACLLFCILYSLSCLT-KH--SSNYPVLLLGRVLGGIATS 136 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHH-Hh--ccccHHHHHHHHHHHHHHH
Confidence 3568888877777666666666666665554 45554 56555555555555432 22 2356666778889999998
Q ss_pred HHHH
Q 011925 358 LMMV 361 (475)
Q Consensus 358 ~~~~ 361 (475)
+.++
T Consensus 137 LLfS 140 (354)
T PF05631_consen 137 LLFS 140 (354)
T ss_pred HHHH
Confidence 8775
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.033 Score=54.00 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCc
Q 011925 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLS 376 (475)
Q Consensus 341 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~ 376 (475)
+.++.++...++|+..|-.......+..+..+++.+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~ 377 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEK 377 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHH
Confidence 456667778899999987776666666555444333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.003 Score=62.73 Aligned_cols=122 Identities=13% Similarity=0.017 Sum_probs=77.3
Q ss_pred HHHHHhh-hcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh---cCCchHHHHHHH
Q 011925 273 LAFYVIN-DLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILI---LPMNMSAFMYVL 348 (475)
Q Consensus 273 ~~~y~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 348 (475)
.-.|+++ +.+.+.+..|++.....++.++.++..+.++....+.|+.++.+..+++++.+++.. .+++.-++++++
T Consensus 57 ~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~ 136 (488)
T KOG2325|consen 57 MWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVA 136 (488)
T ss_pred cchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3355544 345556666777777788888888888877443333377888999888888776633 233356777888
Q ss_pred HHHHHHHHHHHHHhHhhhhhh--hccCCCccchhhhhHHHHHHHHHHHHHHHH
Q 011925 349 AIFVGIANALMMVTGISMQNV--LVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (475)
Q Consensus 349 ~~l~g~g~~~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l 399 (475)
.++.|+|.+... ..-.+... ..++|.+. ++..+.++.+|..+||.+
T Consensus 137 R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA----~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 137 RILTGVGVGNFA-VLRAYIADASTVEDRPRA----FAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHcCcCcccHH-HHHHHHHhccCccchHHH----HHHhhhHHHHHHHHhHHH
Confidence 899999877543 34444444 35556555 333344455555555543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0094 Score=59.25 Aligned_cols=148 Identities=15% Similarity=0.062 Sum_probs=99.1
Q ss_pred eehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHH
Q 011925 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (475)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~ 105 (475)
.+.+.+-.+..++....+.+||=.+++|.+-.+...|......-......-++.+++..|+||-+++ ..++...++=++
T Consensus 373 ~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~-~lgLa~~~~Rf~ 451 (618)
T KOG3762|consen 373 ILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM-YLGLACNVGRFL 451 (618)
T ss_pred EEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee-eehhhHHHHHHH
Confidence 3445555566677778888899888888887778888777777777777888999999999998874 333333332222
Q ss_pred -HhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHH-HHHHHHHHHHHHHHH
Q 011925 106 -SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIA 183 (475)
Q Consensus 106 -~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~ 183 (475)
..+ -.+.|..+..=+ +.++..++++....+++++..| |+-|..+.++. .....+|--++++++
T Consensus 452 ~~S~----------L~n~W~vLPiei----lqgit~aliWaa~~sY~s~vaP-p~l~at~Q~l~~g~f~GlG~g~GslIG 516 (618)
T KOG3762|consen 452 YYSY----------LQNPWMVLPIEI----LQGITHALIWAAIISYASHVAP-PGLRATAQGLLQGIFHGLGKGLGSLIG 516 (618)
T ss_pred HHHH----------hcCchheeeHHH----HHHHHHHHHHHHHHHHHHhhCC-CcchHHHHHHHHHHhcccCcchhhhhh
Confidence 111 112232222222 6788888888888999999987 66676666543 344556666777777
Q ss_pred HHHHHh
Q 011925 184 FIVFSV 189 (475)
Q Consensus 184 ~~l~~~ 189 (475)
+.++..
T Consensus 517 G~~v~~ 522 (618)
T KOG3762|consen 517 GFVVER 522 (618)
T ss_pred hhhhee
Confidence 777654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.019 Score=59.19 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=84.4
Q ss_pred ccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH
Q 011925 282 RMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMM 360 (475)
Q Consensus 282 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 360 (475)
+.+.....+...+..+|..+|+++.+++ ++++| |+.++.++.+.+++.....+.+ +.+.+.+.-++.|++.+...
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GR--k~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGR--KPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhccc--HHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccchh
Confidence 3344444455566677888888887776 45555 7888888888888876666644 77788889999999999999
Q ss_pred HhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 361 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 361 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.....+..+..++++++ .+..+ ......++.+++...+.+.
T Consensus 190 ~~~~~~~~E~~~~~~R~--~~~~~-~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRG--LALTL-GGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred HHhHhhheeecCcchhh--HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 55554 4455555556665555554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.66 Score=46.13 Aligned_cols=213 Identities=12% Similarity=0.031 Sum_probs=108.8
Q ss_pred HHHHHHc----CCChhHHHHHHHHHHH-HhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCc--c----
Q 011925 48 LLFLTDI----GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR--I---- 116 (475)
Q Consensus 48 ~~~~~~~----g~s~~~~g~i~~i~~l-~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~--~---- 116 (475)
..-++|. ...+..+.++-...-+ ...+..++.+++.++.-|+|.+-.......+...++.+. ..|.. .
T Consensus 46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~V-i~P~~~~~hp~~ 124 (509)
T COG3202 46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFV-IYPYKDILHPDP 124 (509)
T ss_pred HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH-HhccccccCCCH
Confidence 3444552 3567778888877777 667789999999999999887654433322222111111 12320 0
Q ss_pred ---------CC-c-------cchhhhhHHHHHHHHHHHHHHhHhH--hhhhhhhcccCCCccchhhHhhHHHHHHHHHHH
Q 011925 117 ---------LS-T-------STLKVETISYCVFAAIFNVGWAATQ--VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (475)
Q Consensus 117 ---------~~-~-------~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (475)
.+ . .+.|...+.|. ..=-|+... .-++...+|++. .+|-.|..+..+.+.+++..
T Consensus 125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi-----~aELWgslV~S~lFw~faNeitt-~~eakRFy~lf~l~~ni~ll 198 (509)
T COG3202 125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYI-----MAELWGSLVLSLLFWQFANEITT-IEEAKRFYPLFGLGANISLL 198 (509)
T ss_pred HHHHHHHhhCCccceeeeEeecchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhh-HHHhhhhHHHHHHHHHHHHH
Confidence 00 0 00111112222 222222222 234566777775 67778888888888888887
Q ss_pred HHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccc---cccc--------ccccCCCcchHHHHHHH
Q 011925 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE---EPRL--------KMGLRGNSHARISWAYW 246 (475)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---e~~~--------~~~~~~~~~~~~~~~~l 246 (475)
+++.+...+................+..+.+.+..++++.++.++.-| +++. ++.++.|.+..++++.+
T Consensus 199 lsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s~k~i 278 (509)
T COG3202 199 LSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKMI 278 (509)
T ss_pred HHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHHHHHH
Confidence 776666555432100000000112444454554444444444332211 1111 01112233467788889
Q ss_pred HhchhHHHHHHHHHHHHHHHH
Q 011925 247 FKKILYYQVALVYMLTRLVVN 267 (475)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (475)
.|.|..+.+.+...+.....+
T Consensus 279 ~~SkyL~~ial~vl~Y~v~in 299 (509)
T COG3202 279 LRSKYLGAIALLVLAYGVSIN 299 (509)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 999987766655555544433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.037 Score=58.20 Aligned_cols=137 Identities=9% Similarity=0.060 Sum_probs=77.4
Q ss_pred HHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc---
Q 011925 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM--AWTGQRLKAYYSAGGVLWVFCGAGILILPMN--- 340 (475)
Q Consensus 266 ~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~--- 340 (475)
++++..-+..|+.+.+|++...+..+........-+.+.+.+.+ +++++ ++.+.++.++..++..++.+....
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~--~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK--FKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 34556667788888788877654433222222222223333332 23333 566777777777776665543211
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCcc-chhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 341 ---MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG-CAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 341 ---~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G-~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.....++.+.+.++|.|..-+...+...+..+++++. .-..+.++-++.++|+.++..+...+.
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122345566777788877776666655544432211 124677777788899888888777664
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.78 Score=47.49 Aligned_cols=65 Identities=8% Similarity=0.059 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhcccC
Q 011925 341 MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS 407 (475)
Q Consensus 341 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~ 407 (475)
+.++.+.-.+++|++............-...|++.+. +..+++.+...+|..++..+++.....+
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS--~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKS--VATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556678999999887766666666667888888 8888888899999999988886665433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.035 Score=40.52 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH
Q 011925 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM 309 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (475)
-..+++...+......|+|.|..+ .|+++.+.+.+..+..+..+++.++.+.+
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~l 58 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFL 58 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777889999999986 69999999988888778888888886665
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.17 Score=42.65 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=67.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhH
Q 011925 65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ 144 (475)
Q Consensus 65 ~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (475)
.++.....++..++...+.+|.|.|+. ++.+.+...+-....+. | ..+..... ..+.|++.+...
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~s-m~lg~~~y~~y~~~~~~---~-------~~~~l~~~----s~l~G~~~a~lW 107 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWS-MILGSLGYAIYIASFFY---P-------NSYTLYPA----SALLGFGAALLW 107 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHh---h-------hHHHHHHH----HHHHhhhhHHhh
Confidence 344445566777778888999999887 45555555444332221 2 11111122 236888888888
Q ss_pred hhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHH
Q 011925 145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (475)
Q Consensus 145 ~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (475)
++....+.+..+ +++|+|..++.......+.+++.+....
T Consensus 108 ~aqg~ylt~~s~-~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 108 TAQGTYLTSYST-EETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HhhhHHHHHcCC-HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888775 7788888888777777776666554433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.13 Score=51.47 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=68.6
Q ss_pred HHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHhhcCC--chHHHHH
Q 011925 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAW----TGQRLKAYYSAGGVLWVFCGAGILILPM--NMSAFMY 346 (475)
Q Consensus 273 ~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 346 (475)
...|+.+++|+++.+...+.....+...+ .++.|.+.+ .+.|.|..+.++.++..++...+...+. .+.....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~ 90 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV 90 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence 44567888999988766555544333222 233343322 2233255667777776555555555543 2333344
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhc---cCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 347 VLAIFVGIANALMMVTGISMQNVLV---GEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 347 ~~~~l~g~g~~~~~~~~~~~~~~~~---~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+..++..+|.......+-++..+.. |++ +| -..+.....+.+|+.++..+.+...
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g--~lqS~~~~~~~~G~lv~~~l~G~l~ 148 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPES-RG--DLQSFVWGVRSVGSLVGSLLSGPLL 148 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH--HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4556666666655443333433332 222 34 5556666667777777766655543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=95.98 E-value=9e-05 Score=74.83 Aligned_cols=107 Identities=11% Similarity=0.166 Sum_probs=76.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHhHhhh
Q 011925 289 ALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMN-MSAFMYVLAIFVGIANALMMVTGISM 366 (475)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~~~~~~~~~~~ 366 (475)
++......++.++|+++.+.+ +|++| |+.+.++..+..++.++..+.+.. +.+.+.+..++.|++.|...+....+
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GR--k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~ 126 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGR--KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIY 126 (451)
T ss_pred HHHHHHHHhhhcccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455556677888888887765 55565 677777887777776665554322 56666777889999999999999999
Q ss_pred hhhhccCCCccchhhhhHHHHHHHHHHHHHHHH
Q 011925 367 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (475)
Q Consensus 367 ~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l 399 (475)
..+..|++++| ...++......+|..++..+
T Consensus 127 ~~E~~~~~~R~--~~~~~~~~~~~~G~~~~~~~ 157 (451)
T PF00083_consen 127 ISEIAPPKHRG--FLSSLFQLFWALGILLASLI 157 (451)
T ss_pred ccccccccccc--cccccccccccccccccccc
Confidence 99999999999 66666666655555555443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.2 Score=37.38 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCC
Q 011925 297 ICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL 375 (475)
Q Consensus 297 ~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~ 375 (475)
....+..++.+.+ ++++. |+.+.+|.+...+-.... +.+ +.+..+...++.|++.+..+.....+..+...++.
T Consensus 48 ~~~~~s~l~~P~iv~~lg~--K~sm~lg~~~y~~y~~~~-~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~ 122 (156)
T PF05978_consen 48 GSFAISCLFAPSIVNKLGP--KWSMILGSLGYAIYIASF-FYP--NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET 122 (156)
T ss_pred HHHHHHHHhHHHHHHHHhh--HHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence 3344555555543 55665 777888777665443332 323 45666788889999999998876666666555666
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 376 SGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 376 ~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
++ ...++.....+.+..+|+.+.-
T Consensus 123 ~~--~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 123 IG--RNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred Hh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 66 5556655566666666665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.0035 Score=64.38 Aligned_cols=123 Identities=14% Similarity=0.174 Sum_probs=2.8
Q ss_pred HHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc----CC------c--
Q 011925 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILIL----PM------N-- 340 (475)
Q Consensus 273 ~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~----~~------~-- 340 (475)
..+-++++.++++.+.+++....-++.++..++..+++..++| -|.+-.|.++++++.+++.+- +. .
T Consensus 25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hr-prwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~ 103 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHR-PRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNS 103 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cceeeecHHHHHHHHHHHhccHhhcCCCcccccccc
Confidence 3344667789999999988888888888877766555433332 345566677776665544321 00 0
Q ss_pred ------------------------------------hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH
Q 011925 341 ------------------------------------MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT 384 (475)
Q Consensus 341 ------------------------------------~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 384 (475)
..+.+++..++.|+|....++...++.++.+++++.+ .+.|+
T Consensus 104 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~sp--lYiGi 181 (539)
T PF03137_consen 104 NGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSP--LYIGI 181 (539)
T ss_dssp ------------------------------------------------SSS-----------------------------
T ss_pred ccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCc--cchhh
Confidence 0123344566889999999999999999999999999 78887
Q ss_pred HHHHHHHHHHHHHH
Q 011925 385 LSFLDKMSCGIAVY 398 (475)
Q Consensus 385 ~~~~~~ig~~ig~~ 398 (475)
......+|+++|=.
T Consensus 182 ~~~~~~lGPa~Gf~ 195 (539)
T PF03137_consen 182 LYAMSILGPALGFL 195 (539)
T ss_dssp --------------
T ss_pred hhHHhhccHHHHHH
Confidence 77777777776633
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.15 Score=37.82 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHh
Q 011925 44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (475)
Q Consensus 44 ~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~ 107 (475)
.+.+|...+|.++|..+.|++-+...+.+.++.+...++.+|..+|+. +..+.+...++...+
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~-~~~~l~~~~~~~~~m 74 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRL-LRAGLLLTVLSTAAM 74 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHH
Confidence 356777777779999999999999999999999999999998666554 566666666665433
|
Note that many members are hypothetical proteins. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.11 Score=54.45 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=84.4
Q ss_pred hhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcC---------
Q 011925 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILP--------- 338 (475)
Q Consensus 268 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~--------- 338 (475)
....-..+-+.+..+++.++.+++....-++..+......+.+-...| -|.+-+|+++++++.++..+-+
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~Hr-Pr~Ig~G~~~m~lgsll~alPHf~~~~y~~~ 192 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHR-PRWIGIGLVLMGLGSLLFALPHFFSGPYEYE 192 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCc-cceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence 334444455667778887777766665556666655554444222221 3555667777766655543310
Q ss_pred ----------C----------------------------ch--HH-HHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCcc
Q 011925 339 ----------M----------------------------NM--SA-FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSG 377 (475)
Q Consensus 339 ----------~----------------------------~~--~~-~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G 377 (475)
. .+ ++ ++++..++.|+|....++...++..+.+.+++..
T Consensus 193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Sp 272 (735)
T KOG3626|consen 193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSP 272 (735)
T ss_pred hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCc
Confidence 0 00 22 3445567889999999999999999998889888
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHH
Q 011925 378 CAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 378 ~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
.+.|+......+|+++|=.+.+
T Consensus 273 --lYlgi~~~~~~lGPaiGfllgS 294 (735)
T KOG3626|consen 273 --LYLGILYSMAILGPAIGFLLGS 294 (735)
T ss_pred --HHHHHHHHHHHhhhHHHHHHHH
Confidence 8888888888888887754443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.2 Score=43.95 Aligned_cols=124 Identities=12% Similarity=0.044 Sum_probs=65.6
Q ss_pred HHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcC-C---chHH--HHH
Q 011925 275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILP-M---NMSA--FMY 346 (475)
Q Consensus 275 ~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~-~---~~~~--~~~ 346 (475)
.|..+..| +.....+...++++..+...+..- |+.||+ |....++..+..++..+=.... + +.++ ...
T Consensus 69 n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~m---w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~ 144 (480)
T KOG2563|consen 69 NYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAM---WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTH 144 (480)
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHH---HhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhH
Confidence 34444444 333334555555555544444332 445555 6777888888877755443322 1 2333 333
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 347 VLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 347 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
....+.+..+..+........+.-++++++. .+..+-.+...+|.++|..+-..+-
T Consensus 145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra--~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRA--IATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred HhHHHHHHhhhHhhccccHHHHhhCCcchhh--hhhhHHHhcchHHHHHHhhccceec
Confidence 4444555555444443334444446777777 5555556777777777765544443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.35 Score=47.42 Aligned_cols=77 Identities=8% Similarity=-0.154 Sum_probs=54.6
Q ss_pred HHHHHHhHhHhhhhhhhcccCCCc--cchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHH
Q 011925 135 IFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI 212 (475)
Q Consensus 135 l~~~~~~~~~~~~~al~~~~~~~~--~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (475)
+..+|.+..-+...++..|..+++ ++|.+...+.+.+.++|..++..+.+.+- .+.+|.+.|.+.++.
T Consensus 42 lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~----------~~~~~~~~f~i~~~~ 111 (372)
T PF00854_consen 42 LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQ----------QNYGWFLGFGIPAIG 111 (372)
T ss_dssp HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHH----------HCS-HHHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhc----------cccchhhhhhHHHHH
Confidence 577888888888888888887654 45566778888888999888765554442 356899988887665
Q ss_pred HHHHHHHHh
Q 011925 213 GCCFVGIFL 221 (475)
Q Consensus 213 ~~i~~~~~~ 221 (475)
.++..+..+
T Consensus 112 ~~~~~~~f~ 120 (372)
T PF00854_consen 112 MLLALIVFL 120 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=7.3 Score=40.10 Aligned_cols=51 Identities=10% Similarity=0.039 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhcc---CCCccchhhhhHHHHHHHHHHHHHHHH
Q 011925 347 VLAIFVGIANALMMVTGISMQNVLVG---EDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (475)
Q Consensus 347 ~~~~l~g~g~~~~~~~~~~~~~~~~~---~~~~G~~~~~~~~~~~~~ig~~ig~~l 399 (475)
...++.++..|...|........... .+.. |..++.+.++.-+|+.+.+.+
T Consensus 115 ~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~--g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 115 VLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNV--ATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhhh--hhhHhHHhHHHHHHHHHHHHH
Confidence 34455677777777766655543211 1223 367776666555555555543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.5 Score=32.57 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=46.3
Q ss_pred hhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 011925 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILIL 337 (475)
Q Consensus 268 ~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~ 337 (475)
.+...+|.. +++.+++..+.+++.....++.++|++...+..+..++ ++.+..+.+...+....+.+.
T Consensus 10 ayTplLP~M-~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 10 AYTPLLPLM-QADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRP-RRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhHhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344445554 45568999999999999999999999887655333222 566677777766666655554
|
Note that many members are hypothetical proteins. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.52 Score=43.87 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=38.5
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHH
Q 011925 332 AGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV 399 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l 399 (475)
.++.+.+ +.|.+++.++.=|+-.|..+.+..--....++++.+- .+++.......+|-.+++.+
T Consensus 334 a~~~ftp--si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rE--famsavs~sDS~Gi~lA~~l 397 (409)
T KOG3880|consen 334 AWYWFTP--SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVRE--FAMSAVSISDSIGIFLAGLL 397 (409)
T ss_pred HHHHhcc--HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHH--HhHhhheecchhhHHHHHHH
Confidence 3344444 6666555566667666666655555555555555555 67777777777777766654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.81 Score=44.86 Aligned_cols=87 Identities=8% Similarity=0.049 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCCc-----hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCC-ccchhhhhHHHHHH
Q 011925 318 AYYSAGGVLWVFCGAGILI--LPMN-----MSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDL-SGCAFVCGTLSFLD 389 (475)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~~~~ 389 (475)
|++.++..+..++.+++.+ .+.. +...+++.+.+.++|.|..=|+...+..+..++++ .-.-..+..+-++.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 3566677777777666332 2211 23456777888999999988888887766655442 22225677888889
Q ss_pred HHHHHHHHHHHHHhc
Q 011925 390 KMSCGIAVYVLQSYQ 404 (475)
Q Consensus 390 ~ig~~ig~~l~~~~~ 404 (475)
++|..++..+...+.
T Consensus 82 n~G~~~~~~~~~~i~ 96 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ 96 (372)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred hhhhHhhcccchhhc
Confidence 999988887666665
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.8 Score=39.55 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH--HHHHHHHhHhhhhhhhcc
Q 011925 297 ICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGI--ANALMMVTGISMQNVLVG 372 (475)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~~~~~~~~~~~~~~~~~ 372 (475)
+..++.+++. +.+.||+ |..+.+......+......+. . |++++ +.++ +.+..++...++..+...
T Consensus 73 ~~~~i~s~~i---G~lSD~~grk~~L~~~~~~~~l~~~~~~~~---~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~ 142 (463)
T KOG2816|consen 73 LLTLISSPLI---GALSDRYGRKVVLLLPLFGTILPALCLLFQ---G-YWFFL---LLGLSGGFSAIFSVGFAYVADISS 142 (463)
T ss_pred HHHHHHHhhh---HHhhhhhhhhhhHHHHHHHHHHhHHHHHHH---H-HHHhh---hcccccchhhhhhhhhhheeeccc
Confidence 3444444544 4445555 445555555555444443332 2 33332 3332 334455667777777655
Q ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 373 EDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 373 ~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
++.+- ..+|+.+-....+..+++.+.+.
T Consensus 143 ~~~R~--~~~gll~~~~~~~~~~~p~~~~~ 170 (463)
T KOG2816|consen 143 EEERS--SSIGLLSGTFGAGLVIGPALGGY 170 (463)
T ss_pred hhHHH--HHHHHHHHHHHHHHhHHHHHHHH
Confidence 55555 44555444334444444444433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.59 E-value=12 Score=34.21 Aligned_cols=111 Identities=13% Similarity=0.217 Sum_probs=57.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 011925 289 ALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQ 367 (475)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~ 367 (475)
+.......+...++.++.+.+ ++.++ |+.+..+......+.....+......+...+.....|++.+...+....+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 119 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGR--RKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL 119 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccc--hHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444445555555555443 22233 344555544333332333333322344445555567888887777777777
Q ss_pred hhhccC-CCccchhhhhHHHH-HHHHHHHHHHHHHHHh
Q 011925 368 NVLVGE-DLSGCAFVCGTLSF-LDKMSCGIAVYVLQSY 403 (475)
Q Consensus 368 ~~~~~~-~~~G~~~~~~~~~~-~~~ig~~ig~~l~~~~ 403 (475)
.+..++ ++++ ...+.... ...++..+++.+.+.+
T Consensus 120 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 120 SEWFPEATERG--LAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred HHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665 3455 55555555 3555666666443333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=90.10 E-value=21 Score=35.31 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=65.2
Q ss_pred hhhHHHHHHHhhh-cccccchhh--hHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 011925 268 VSQAYLAFYVIND-LRMGQSAKA--LVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVLWVFCGAGILILPMNMSAF 344 (475)
Q Consensus 268 ~~~~~~~~y~~~~-~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (475)
....|+..|+.+. .|++..+.. .++.-.+ ..+...+....+.+..+ +|+.++++.+...+...++.+. ++.+.
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tY-Syl~~l~~vflltd~l~-Ykpviil~~~~~i~t~~lll~~--~sv~~ 96 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTY-SYLAFLLPVFLLTDYLR-YKPVIILQALSYIITWLLLLFG--TSVLA 96 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHH--CcHHH
Confidence 5678888998875 788766543 3332221 11222222222333322 2788877777766665555553 35556
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011925 345 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 402 (475)
Q Consensus 345 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~ 402 (475)
+-+.-++.|++.+.-.+...-+-. ..++++.- .+.+-.......|..+++.+...
T Consensus 97 mq~~q~~yg~~~a~evay~sYiys-~v~~~~yq--~vts~~raa~l~g~~~s~~lgQl 151 (412)
T PF01770_consen 97 MQLMQFFYGLATAAEVAYYSYIYS-VVDKEHYQ--KVTSYTRAATLVGRFISSLLGQL 151 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhee-ecCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788777654432211111 12222222 33444445555555555544443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=16 Score=37.64 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=30.8
Q ss_pred HHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 011925 48 LLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85 (475)
Q Consensus 48 ~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr 85 (475)
...+... |-+....+.+++++....+++..+.|++.++
T Consensus 38 ~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 38 GTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444444 8899999999999999999999999887643
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.77 E-value=14 Score=37.14 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhc---cCCcchhHHHHHHHHHHHHHHhcCCccCCccC--Ccc--------chhhhhH
Q 011925 61 AAAVMLSGQIADGFATIFIGELIDR---FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL--STS--------TLKVETI 127 (475)
Q Consensus 61 ~g~i~~i~~l~~~i~~p~~G~l~Dr---~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~--~~~--------~~~~~~~ 127 (475)
.+.-.....+...+...+++.+++| +||++. +..+.++..+...+... ..|...+ ++. +.....+
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~-~~~~~~~~~~~~~li~l-~~p~dap~~~t~~~~~~~~~~~~~~~i 358 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT-VLIGIIIHLIGFLLIHL-SFPNDAPLRPTDSPPLLFTPSYYLALI 358 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc-hhHHHHHHHHHHHHHhc-cccccCCCCCCcccccccccchhHHHH
Confidence 3444444445555566777777776 888776 55555555555444443 3442110 111 1111222
Q ss_pred HHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHH
Q 011925 128 SYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
.+ .+.|.+-.+.+......+.+.. +++|..+.++.-....++..++
T Consensus 359 i~----~l~G~~D~~~~t~~~~ii~~~~--~~~~~~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 359 IG----FLLGFGDACFNTQRYVIIALLY--PDDRAQAFSLFKFYQSVASCVA 404 (461)
T ss_pred HH----HHHhhHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHH
Confidence 22 3678888888777777777776 4567776666666665665543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.83 E-value=22 Score=35.00 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhccC
Q 011925 344 FMYVLAIFVGIANALMMVTGISMQNVLVGE 373 (475)
Q Consensus 344 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~ 373 (475)
...+...+.+.+.+..+...........++
T Consensus 119 vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ 148 (406)
T KOG1479|consen 119 VTLIIVVLLNLANAVVQGSLYGLAGLFPSE 148 (406)
T ss_pred HHHHHHHHHhhhhhhhccchhhhhhcCCHH
Confidence 334455567777777776666665554333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=87.37 E-value=17 Score=36.31 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH---HHHHHHHHHhcCCccCCccCCccch
Q 011925 46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS---VLVAVSFSSVFGGCMPCRILSTSTL 122 (475)
Q Consensus 46 ~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~ 122 (475)
.+..|+.+.|+|+..+|..-+...+....+..++.++.+|+|..|.=++... .....+....+ .|. ++. +.
T Consensus 280 lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~---~~~--~~~-~~ 353 (432)
T PF06963_consen 280 LMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFW---APG--SPF-SS 353 (432)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHh---cCC--CCc-hh
Confidence 4466777779999999999999999999999999999999998886333221 12222222223 221 110 11
Q ss_pred hhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHH
Q 011925 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (475)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (475)
... ..+.....+.-+|.=..+....-++-|..+ ++||+..++......++--++...+
T Consensus 354 ~s~-~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~-~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 354 ISA-YLLLGGIALSRIGLWSFDLAVTQIMQENVP-ESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hHH-HHHHHHHHHHHHHHHhhhHHHHHhhcccCC-HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 111100012334444455555556666665 8899999999998888776664433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=86.30 E-value=41 Score=34.14 Aligned_cols=41 Identities=5% Similarity=-0.045 Sum_probs=32.2
Q ss_pred hHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 362 TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 362 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.-+....+.+..++.. ..+++.+.+.++|..+++.+...+.
T Consensus 149 lFW~fandi~t~~qak--Rfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAK--RFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666 8899999999999999998887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 475 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 45/254 (17%), Positives = 78/254 (30%), Gaps = 76/254 (29%)
Query: 267 NVSQAYLAFYVINDLRMGQSAKALVPAII---YICSFIVSILLQEMAWTGQRLKAYYSAG 323
VS F+ + + + + V ++ Y F++S + E + Y
Sbjct: 60 AVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 324 GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLV-GEDLSGC---- 378
L+ + N+S L + AL+ + +NVL+ G + G
Sbjct: 117 DRLY---NDNQVFAKYNVSRLQPYLKL----RQALLELR--PAKNVLIDG--VLGSGKTW 165
Query: 379 --AFVCGTLSFLDKMSCGI----------AVYVLQSYQSMSPTV-------LDNNSSI-- 417
VC + KM I VL+ Q + + D++S+I
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 418 -------------------TSLTVLDN--NS------------LISTSYISVTRFGLGLI 444
L VL N N+ L++T + VT F
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 445 PAICSLVSVAVTFT 458
SL ++T T
Sbjct: 286 TTHISLDHHSMTLT 299
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.91 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.9 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.23 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.03 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.02 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.89 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.79 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.74 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=268.20 Aligned_cols=359 Identities=12% Similarity=0.008 Sum_probs=262.9
Q ss_pred ccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHH
Q 011925 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (475)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~ 102 (475)
++......++.+...........++|.+.++. .|+.+.|++.+++.+...+.+|++|+++||+||||. ++.+.+..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH-HHHHHHHHHH
Confidence 34455666777777777777888899999999 999999999999999999999999999999999887 5556655555
Q ss_pred HHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHH
Q 011925 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (475)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (475)
+.++... .|. . ..+.+...+.. .+.+++.+...++..+++.|..+ +++|++..++...+..+|.++++.+
T Consensus 105 ~~~~~~~--~~~-~--~~~~~~l~~~~----~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 105 VMLFMGF--VPW-A--TSSIAVMFVLL----FLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHH--CHH-H--HSSSSHHHHHH----HHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHh--hhh-c--cccHHHHHHHH----HHHHHHhhhccchHHHHHHHHCC-chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5543331 010 0 11222222222 26788888888899999999987 7889999999999999999998888
Q ss_pred HHHHHHhhccCCccchHHH-HHHHHHHHHHHHHHHHHHHhhccccccccccc---CC---------------CcchHH-H
Q 011925 183 AFIVFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RG---------------NSHARI-S 242 (475)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~---~~---------------~~~~~~-~ 242 (475)
++.+.. ..+ ||+.+++.+++.++..++.++..||+++..+. ++ +.+.++ .
T Consensus 175 ~~~l~~----------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (451)
T 1pw4_A 175 FLLGMA----------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIF 244 (451)
T ss_dssp HHHHHH----------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHH
T ss_pred HHHHHH----------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccch
Confidence 877653 345 99988888777766666655556664332110 00 001111 1
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHH--hhhhHHH
Q 011925 243 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT--GQRLKAY 319 (475)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~r~k~~ 319 (475)
.++++|||.++...+..++..........++|.|+++..|.++.+.+.+.....++.+++.++.+++ +|+ ++ |+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~--~~~ 322 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--RGA 322 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC--HHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chh
Confidence 4677889998888888888888888889999999998889998888887777788888888888775 444 33 455
Q ss_pred HHHHHHHHH-HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHH-HHHHHH
Q 011925 320 YSAGGVLWV-FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAV 397 (475)
Q Consensus 320 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~i-g~~ig~ 397 (475)
+.++..+.. ++.+.+.+.+..+.+...+...+.|++.+...+....+..+..|++++| ..+|+.+...++ |..+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~g~~~~~ 400 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAAS 400 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh--hHHHHHHHHHHHHHHHHHH
Confidence 555555544 5544444443335555566677888888888877778888889999899 899999999999 999999
Q ss_pred HHHHHhcccC
Q 011925 398 YVLQSYQSMS 407 (475)
Q Consensus 398 ~l~~~~~~~~ 407 (475)
.+.+.+....
T Consensus 401 ~~~g~l~~~~ 410 (451)
T 1pw4_A 401 AIVGYTVDFF 410 (451)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhc
Confidence 9888776443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=244.00 Aligned_cols=364 Identities=11% Similarity=-0.028 Sum_probs=252.9
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~ 101 (475)
+++......+..+...+......+++|.+.++.|+|..++|++.+++.+...+.+|+.|+++||+||||.+ +.+.+..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l-~~~~~~~~ 102 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI-ITGLFLYA 102 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH-HHHHHHHH
Confidence 34445556666677777778888888888777899999999999999999999999999999999999984 55555555
Q ss_pred HHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHH
Q 011925 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (475)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (475)
++.++... .. . ..+.+.. ...+ .+.+++.+...++..+++.+..+ +++|++..++.+....+|..+++.
T Consensus 103 ~~~~~~~~--~~--~--~~~~~~l-~~~~---~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 103 LGAALFWP--AA--E--IMNYTLF-LVGL---FIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp HHHHHHHH--HH--H--TTCHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--cc--c--cccHHHH-HHHH---HHHHhhHHHhhhhHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 55544310 00 0 1122222 2222 27888888888899999999987 788999999999999999999988
Q ss_pred HHHHHH-HhhccCCc---------------cchHHHHHHHHHHHHHHHHHHHHHHhh-ccccccccc-ccCCCcchHHHH
Q 011925 182 IAFIVF-SVSTAKTH---------------ADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKM-GLRGNSHARISW 243 (475)
Q Consensus 182 ~~~~l~-~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~e~~~~~-~~~~~~~~~~~~ 243 (475)
+++.+. ...+..+. .+...+||+.+++.+.+.++..++.++ ..||+++++ +++++++.++++
T Consensus 172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 251 (438)
T 3o7q_A 172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASL 251 (438)
T ss_dssp HTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHH
T ss_pred HHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhH
Confidence 887776 32210000 001123999987776655555444333 344433322 223344556788
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHH-HhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHH
Q 011925 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYS 321 (475)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~ 321 (475)
++++|+|+++...+..++..........++|.| +++..|.++.+.+.......++.+++.++.+++ +|+++ |+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~--~~~~~ 329 (438)
T 3o7q_A 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP--HKVLA 329 (438)
T ss_dssp HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHH
Confidence 999999998888887777777788888999999 888779998888877777778888888887765 44444 56666
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 011925 322 AGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ 401 (475)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~ 401 (475)
.+..+..++.+...+.+ +.+. .....+.|++.+...+....+..+..+++ ++ ...++.. ...+|..+++.+.+
T Consensus 330 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-~~~~g~~~~~~~~g 402 (438)
T 3o7q_A 330 AYALIAMALCLISAFAG--GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIV-MTIIGGGIVTPVMG 402 (438)
T ss_dssp HHHHHHHHHHHHHHHCC--HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH--HHHHHHH-HTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc--chhhHHH-HHHHHHHHHHHHHH
Confidence 77776666655555543 3333 34457778888888887777766666655 55 4455544 45688888888777
Q ss_pred Hhccc
Q 011925 402 SYQSM 406 (475)
Q Consensus 402 ~~~~~ 406 (475)
.+.+.
T Consensus 403 ~l~~~ 407 (438)
T 3o7q_A 403 FVSDA 407 (438)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-25 Score=221.57 Aligned_cols=353 Identities=9% Similarity=-0.037 Sum_probs=232.1
Q ss_pred ceehccccchhHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHH
Q 011925 25 SVLYYGSGHMLNDITAACWFTYLLLFLTD------IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGS 97 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~------~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr-~Grr~~~l~~~~ 97 (475)
..+......+.....+....++++.|+++ .|.|..+.|++.+++.+...+.+|+.|+++|| +||||.+ ..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~-~~~~ 92 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV-FWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHH
Confidence 34455556666677777777888888876 69999999999999999999999999999999 8999984 5555
Q ss_pred HHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccc--hhhHhhHHHHHHHHH
Q 011925 98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMVA 175 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~--R~~~~~~~~~~~~~g 175 (475)
+..+++.++... . .+.+.. ...+ .+.+++.+...++..+++.|..+ +++ |++..+..+....+|
T Consensus 93 ~~~~~~~~~~~~-------~--~~~~~~-~~~~---~l~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 93 VLIMLGHIVLAL-------P--FGASAL-FGSI---ILIIIGTGFLKPNVSTLVGTLYD-EHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHHHHHHHHHHS-------C--CSTTHH-HHHH---HHHHHHHHHHHHHHHHHHHHHSS-SCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------h--hhHHHH-HHHH---HHHHHHHHhccchHHHHHHHHcC-cccccceeeehHHHHHHHHH
Confidence 555555543331 1 122222 2222 26788888888888999999987 555 666777777888888
Q ss_pred HHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccc----ccccCCCc-chHHHHHH-----
Q 011925 176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL----KMGLRGNS-HARISWAY----- 245 (475)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~----~~~~~~~~-~~~~~~~~----- 245 (475)
..+++.+++.+.. ..+||+.+++.++..++..++.+...++..+ +++++.++ +.++..+.
T Consensus 159 ~~~~~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 228 (491)
T 4aps_A 159 AFIAPLIVGAAQE----------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV 228 (491)
T ss_dssp HHHHHHHHHHHHH----------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHH
Confidence 8888888777653 3579999888766555554444322222111 11111111 11110000
Q ss_pred ------------------------------------------------HHhc--hhHHHHHHHHHHHHHHHHhhhHHHHH
Q 011925 246 ------------------------------------------------WFKK--ILYYQVALVYMLTRLVVNVSQAYLAF 275 (475)
Q Consensus 246 ------------------------------------------------l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
..++ ...+...+...+..........++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4aps_A 229 AGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLAT 308 (491)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHH
T ss_pred HHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 0011 11233344445555566677888999
Q ss_pred HHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhh---HHHHHHHHHHHHHHHHHHhhc-------CCchHHH
Q 011925 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL---KAYYSAGGVLWVFCGAGILIL-------PMNMSAF 344 (475)
Q Consensus 276 y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~---k~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 344 (475)
|..+..+.+....+.......++.+++.++.+++ +|+++|. .+.+..+..+..++...+... ...+.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4aps_A 309 FAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW 388 (491)
T ss_dssp HHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH
T ss_pred HHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH
Confidence 9988777765555666666666777777776664 5555542 122335666655554444331 1124455
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 345 MYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 345 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
..+..++.|++.+...+....+..+..|++.+| ...|+.+....+|..+++.+.+.+.
T Consensus 389 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 389 LVGSWALVILGEMLISPVGLSVTTKLAPKAFNS--QMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS--SSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777888988887888888888899999999 8889999999999999998877665
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=233.78 Aligned_cols=343 Identities=12% Similarity=0.024 Sum_probs=242.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhc
Q 011925 29 YGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (475)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~ 108 (475)
..++.+..........+.+|.+.++.|.|+.+.|++.++..+...+.+|+.|+++||+||||.++ .+.....++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL-VGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHHHHHHHHH
Confidence 34455666777777888888887777999999999999999999999999999999999999855 45555555543332
Q ss_pred CCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011925 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (475)
Q Consensus 109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (475)
. ..+.+. +...+ .+.+++.+...+...+++.|..+ +++|++..+..+....+|..+++.+++.+.
T Consensus 84 ~---------~~~~~~-l~~~~---~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~- 148 (375)
T 2gfp_A 84 T---------TSSLTV-LIAAS---AMQGMGTGVGGVMARTLPRDLYE-RTQLRHANSLLNMGILVSPLLAPLIGGLLD- 148 (375)
T ss_dssp H---------HHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHH-TSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred H---------hccHHH-HHHHH---HHHHHHHHhhhhhHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-
Confidence 1 012222 22222 26778888888888899999886 678999999999998888888777665543
Q ss_pred hhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCcchHHHHHHHHhchhHHHHHHHHHHHHHHHHh
Q 011925 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNV 268 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (475)
...+||+.+++.+++.++..++.++..||+++++ +++++.++++++++|||+++...+..++.......
T Consensus 149 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (375)
T 2gfp_A 149 ---------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD--APRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAA 217 (375)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT--CCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC--cccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 2468999998887777666654556667754332 22223445667888999988888877877778888
Q ss_pred hhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHH--HhhcCCchHHHH
Q 011925 269 SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAGGVL-WVFCGAG--ILILPMNMSAFM 345 (475)
Q Consensus 269 ~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 345 (475)
...+.|.|+++..|.++.+.+.......++.+++.++.+ ++.||.++....+... ...+... ....+.++.+..
T Consensus 218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~---~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T 2gfp_A 218 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG---RPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTL 294 (375)
T ss_dssp HHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH---TTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHH
Confidence 889999999888888887777777776777777776654 4456553333333333 2222111 111111244555
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 346 YVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 346 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.+...+.|++.+...+....+..+..| +++| ...|+.+...++|..+++.+.+.+.
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAG--TAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHH--HHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccc--hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778889998888877777777777 6777 8999999999998888877666554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=222.39 Aligned_cols=356 Identities=10% Similarity=0.056 Sum_probs=199.2
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~ 100 (475)
+.++........+.....+....+++|.|+++. |+|+.++|++.++..+...+.+|++|+++||+||||++++...+ .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~-~ 83 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG-M 83 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH-T
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH-H
Confidence 334444444444555566667778999999886 99999999999999999999999999999999999986543332 2
Q ss_pred HHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCC-ccchhhHhhHHHHHHHHHHHHH
Q 011925 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
.+.....+. .. .... ........+. +.+.+.+....+..+...+..++ +++|+...+.......+|..++
T Consensus 84 ~~~~~~~~~--~~--~~~~--~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~ 154 (417)
T 2cfq_A 84 LVMFAPFFI--FI--FGPL--LQYNILVGSI---VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG 154 (417)
T ss_dssp TSCHHHHHH--HT--HHHH--HHTTCCHHHH---GGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHH
T ss_pred HHHHHHHHH--HH--HHHH--HHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 211000000 00 0000 0000000110 11111111111112222222211 2334444444444556676676
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--cc----CCCcchHHHHHHHHhchhHH
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--GL----RGNSHARISWAYWFKKILYY 253 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~--~~----~~~~~~~~~~~~l~~~~~~~ 253 (475)
+.+++.+.. .+|++.+++.++.+++..+..+...||+++.. ++ ++++...+++++++|+|+++
T Consensus 155 ~~l~~~l~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (417)
T 2cfq_A 155 ASIVGIMFT-----------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHHH-----------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH-----------hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchh
Confidence 666655542 35788777665554444444333344432111 00 11111234567788999887
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhccc---ccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHH
Q 011925 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRM---GQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVF 329 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~ 329 (475)
...+..++..........++|.|+.+..+. +....+....+..++.+++.++.+++ +|+++ |+.+..+..+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~l~~~~~~~~~ 301 (417)
T 2cfq_A 224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG--KNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHH
Confidence 666554444444555556788887665442 22333444444445556666665554 44443 5566666666666
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH-HHHHHHHHHHHHHHHHHHhc
Q 011925 330 CGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~ig~~ig~~l~~~~~ 404 (475)
+...+.+. ++.+.+++...+.+++.+...+....+..+..|++.+| ..++. ++....+|+.+++.+.+.+.
T Consensus 302 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 302 RIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 54444333 24444455555667776666666677788888888888 66776 46777788888888877654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=204.93 Aligned_cols=412 Identities=12% Similarity=0.028 Sum_probs=225.1
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHc----C----CChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHH
Q 011925 28 YYGSGHMLNDITAACWFTYLLLFLTDI----G----LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (475)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~----g----~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~ 99 (475)
.-++|.+..+.+.+.++..+|...++. + .+..+.|++.+++.+...++.+++|+++||+|||+.+++...+.
T Consensus 16 ~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~ 95 (491)
T 4gc0_A 16 VATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLF 95 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 335666666666666666666555443 2 23567899999999999999999999999999999855544443
Q ss_pred HHHHHHHhcCCccCCccC----------CccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHH
Q 011925 100 VAVSFSSVFGGCMPCRIL----------STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN 169 (475)
Q Consensus 100 ~~~~~~~~~~~~~p~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~ 169 (475)
...+....+. +.... ......+.++..+ .+.|++.+...+...+++.|..| +++|++..+..+
T Consensus 96 ~i~~i~~a~~---~~~~~~~~~~~~~~~~~a~~~~~l~~~R---~l~G~g~G~~~~~~~~~i~E~~p-~~~rg~~~~~~~ 168 (491)
T 4gc0_A 96 FISGVGSAWP---ELGFTSINPDNTVPVYLAGYVPEFVIYR---IIGGIGVGLASMLSPMYIAELAP-AHIRGKLVSFNQ 168 (491)
T ss_dssp HHHHHHHHCT---TTTTSCSSSSSSCCGGGGGCHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTSC-GGGHHHHHHHHH
T ss_pred HHHHHHHHHH---hhhhhhhcchhHHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhCC-HHhhhhhHHhhh
Confidence 3333333331 10000 0011222233333 37888888888888899999997 889999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccc---cccCCC----------
Q 011925 170 AFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---MGLRGN---------- 236 (475)
Q Consensus 170 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~---~~~~~~---------- 236 (475)
.+...|.+.+..++..+........ .....||+.+.+..+..++..+.. +..||+++. +.++++
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 169 FAIIFGQLLVYCVNYFIARSGDASW--LNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTT--TTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchhhcccccccc--ccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 8888888887776655543322111 124578888877666665554443 556665321 000000
Q ss_pred --------cchHHH---------HHHHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHH
Q 011925 237 --------SHARIS---------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICS 299 (475)
Q Consensus 237 --------~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~ 299 (475)
.+.++. ....++.+..........+..........++..++.+..+.+............+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (491)
T 4gc0_A 246 NTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVIN 325 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHH
Confidence 000000 001111222222222222222222223334444444555655544444444445566
Q ss_pred HHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHHHHH-HHHhHhhhhhhhccCCC
Q 011925 300 FIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGILI--LPMNMSAFMYVLAIFVGIANAL-MMVTGISMQNVLVGEDL 375 (475)
Q Consensus 300 ~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~g~~~-~~~~~~~~~~~~~~~~~ 375 (475)
+++.++..++ +|++| |+.+..+.....++...+.. ....+.+...+...+...+.+. ..+....+..+..|.+.
T Consensus 326 ~~~~~~~~~l~dr~Gr--r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~ 403 (491)
T 4gc0_A 326 LTFTVLAIMTVDKFGR--KPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 403 (491)
T ss_dssp HHHHHHHHHHHHHHCS--HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT
T ss_pred HHHHHHHHHHHHhhcC--cchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH
Confidence 6666666654 56665 55555555555444333322 1222222222222222222222 23455677888889998
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHhcccCCccccCCCcccccccccCCCCCcHHHHHHHHHHHhhHhHHHHHHHHHH
Q 011925 376 SGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAV 455 (475)
Q Consensus 376 ~G~~~~~~~~~~~~~ig~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (475)
++ ...|+.+...++++.+++.+...+...... ....+....+.+..+++.+..+++
T Consensus 404 R~--~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~----------------------~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 404 RG--KALAIAVAAQWLANYFVSWTFPMMDKNSWL----------------------VAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----------------------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HhhhhhhHHHHHHHHHHHHHHHHH
Confidence 88 778888888888888887765544311000 000011112333333444444455
Q ss_pred HhhccCCccChhhhHhhhcC
Q 011925 456 TFTMKLHTPYSKPLVEPLLQ 475 (475)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~ 475 (475)
+++.|+||.+..|+-|+++|
T Consensus 460 ~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 460 WKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHCCCCTTCCHHHHGGGTC
T ss_pred HheecCCCCCCHHHHHHHhC
Confidence 67889999877666666654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=203.35 Aligned_cols=353 Identities=9% Similarity=-0.028 Sum_probs=207.2
Q ss_pred ceehccccchhHHHHHHHHHHHHHHHHHHc-C------CChhHHHHHHHHHHHHhhhhhhhhhhhhhcc-CCcchhHHHH
Q 011925 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-G------LSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAG 96 (475)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g------~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~-Grr~~~l~~~ 96 (475)
......+..+.....+....++++.|+++. | .|+.+.|++.+++.+...+..++.|+++||+ ||||.++ .+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~-~~ 91 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL-WL 91 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HH
Confidence 344455666677777777888999999886 9 9999999999999999999999999999999 9999854 45
Q ss_pred HHHHHHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhH---HHHHHH
Q 011925 97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC---RNAFTM 173 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~---~~~~~~ 173 (475)
.+..+++.++... .. .+.+...+.. .+.+++.+...++..+++.+..+ +++|++..+. .+....
T Consensus 92 ~~~~~~~~~~~~~-------~~-~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~ 158 (524)
T 2xut_A 92 SLIYCVGHAFLAI-------FE-HSVQGFYTGL----FLIALGSGGIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTIN 158 (524)
T ss_dssp HHHHHHHHHHHHH-------TS-SCHHHHHHHH----HHHHHHHHTTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------hc-ccHHHHHHHH----HHHHHhccccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHH
Confidence 5555555433321 11 1222222222 26788888888888999999987 6777665555 777778
Q ss_pred HHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-CCCcch-------------
Q 011925 174 VANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHA------------- 239 (475)
Q Consensus 174 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~~------------- 239 (475)
+|..+++.+++.+.. ..+|++.+++.+++.++..++.+...++.++.+++ ++..+.
T Consensus 159 ~g~~~g~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (524)
T 2xut_A 159 FGSFFASLSMPLLLK----------NFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVE 228 (524)
T ss_dssp HHHHHHHHTSTHHHH----------TSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CT
T ss_pred HHHHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhc
Confidence 888887776665542 34799998887776665555443322221111000 000000
Q ss_pred -HH--------------------------------------------HHHHHH-----------hc-hhHHHHHHHHH--
Q 011925 240 -RI--------------------------------------------SWAYWF-----------KK-ILYYQVALVYM-- 260 (475)
Q Consensus 240 -~~--------------------------------------------~~~~l~-----------~~-~~~~~~~~~~~-- 260 (475)
.+ +++++. ++ ++.+.......
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (524)
T 2xut_A 229 GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALV 308 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTS
T ss_pred ccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHH
Confidence 00 000000 11 11111111111
Q ss_pred -HHHHHHHhhhHHHHHHHhhhccccc-chhhhHhHHHHHHHHHHHHHHHH-----HHHHhhhh--HHHHHHHHHHHHHHH
Q 011925 261 -LTRLVVNVSQAYLAFYVINDLRMGQ-SAKALVPAIIYICSFIVSILLQE-----MAWTGQRL--KAYYSAGGVLWVFCG 331 (475)
Q Consensus 261 -~~~~~~~~~~~~~~~y~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~r~--k~~~~~~~~~~~~~~ 331 (475)
+..........+++.+..+ .+.+. ...+.+.....++.++..++.++ .+|.++|. ++.+.++..+..++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 387 (524)
T 2xut_A 309 TPFWSLFDQKASTWILQAND-MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSW 387 (524)
T ss_dssp HHHHTTTSSTTTHHHHHHHH-SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHhHHh-cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 1111111222334444332 22211 01222222222233333333322 23333322 244556666666665
Q ss_pred HHHhhcC-------CchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 332 AGILILP-------MNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 332 ~~~~~~~-------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
+.+.+.+ ..+.+...+..++.|++.+...+....+..+..|++.+| ..+|+.+....+|+.+++.+.+.+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 388 IVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG--TIMSFWTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCT--TTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544432 124455566778899999999998889999999999999 8899999999999999999988775
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-11 Score=117.31 Aligned_cols=176 Identities=9% Similarity=-0.028 Sum_probs=122.1
Q ss_pred cceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhcc--CCcchhHHHHHHHH
Q 011925 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLV 100 (475)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~--Grr~~~l~~~~~~~ 100 (475)
+..+...+..+...........++|.|+++. |.++.+.|++.++..+...+..++.|+++||+ |||+.++....+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 3344556666666677777888999999996 99999999999999999999999999999999 98887544444333
Q ss_pred HHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHH-HHHHH
Q 011925 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSL 179 (475)
Q Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~-g~~~~ 179 (475)
.++...... ......+...... .+.+.+.+.......++..+..+ +++|++..++.+....+ |..++
T Consensus 332 ~~~~~~~~~-------~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 332 TIATIVYWM-------NPAGNPTVDMICM----IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHHHTTS-------CCTTCHHHHHHHH----HHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------hcccCHHHHHHHH----HHHHHHHhchHHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHHHHHH
Confidence 244433321 1111222222222 24566666666667788888876 67899999999998888 98888
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (475)
+.+.+.+.+. .+|+..+++.+++.++..++.+
T Consensus 400 ~~~~g~l~~~----------~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 400 SAIVGYTVDF----------FGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHHS----------SCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHHHH
Confidence 8887777642 2466666666555555444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-08 Score=102.46 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-----cccccchhhhHhHHHHHHHHHHHHHHHHH-HH-HhhhhHHHHHHH
Q 011925 251 LYYQVALVYMLTRLVVNVSQAYLAFYVIND-----LRMGQSAKALVPAIIYICSFIVSILLQEM-AW-TGQRLKAYYSAG 323 (475)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~r~k~~~~~~ 323 (475)
.++......++.....+....+++.|+.+. .|.+..+.+++.....++..++.++.+++ +| +++ |+.+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~--r~~~~~~ 91 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGA--RPAVFWG 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH--HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hHHHHHH
Confidence 455666666777777888889999999887 89999888888888888888888888775 44 344 6788888
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 011925 324 GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY 403 (475)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~ 403 (475)
..+..++.+...+. ++.+.+++..++.|++.+...+....+..+..++++++.+..++..+....+|..+++.+.+.+
T Consensus 92 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 92 GVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 88887776666553 3566667788899999999999888998888887774433788888888899999998888776
Q ss_pred c
Q 011925 404 Q 404 (475)
Q Consensus 404 ~ 404 (475)
.
T Consensus 170 ~ 170 (491)
T 4aps_A 170 Q 170 (491)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=101.15 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH-
Q 011925 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI- 334 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~- 334 (475)
+..++............|. +.++.|.+..+.+++.....++..++.++.+++ +|+++ |+.+.++..+..++.++.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~--r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY--KAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc--hHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555665 556779999888888888888888888887765 44444 677888888888776665
Q ss_pred --hhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 335 --LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 335 --~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.+ .++.+.+++..++.|++.+...+....+..+..++++++ ...+..+....+|..+++.+.+.+.
T Consensus 110 ~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 110 PAAE--IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH--HHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hccc--cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 246777778889999999999999999999999999998 7888889999999999988776654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-09 Score=103.39 Aligned_cols=164 Identities=10% Similarity=0.037 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHc-C---CChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCc
Q 011925 40 AACWFTYLLLFLTDI-G---LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (475)
Q Consensus 40 ~~~~~~~l~~~~~~~-g---~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~ 115 (475)
+......+|.|+++. + .+....|...++..+...+..++.|+++||+||||.. ..+....++......
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l-~~~~~~~~~~~~~~~------- 307 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL-LLAGTIMSVRIIGSS------- 307 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH-HHHHHHHHHHHHHHH-------
Confidence 334444577788775 4 2355678888888888889999999999999998874 445554544433222
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHH-HHHHHHHHHHHHHHHHHHHHhhccCC
Q 011925 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKT 194 (475)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~ 194 (475)
... +.+.. .... .+.+.+.+....+..++.+|..| ++.|+...+.. +....+|..+++.+.+.+.+
T Consensus 308 ~~~--~~~~~-~~~~---~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~------ 374 (417)
T 2cfq_A 308 FAT--SALEV-VILK---TLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE------ 374 (417)
T ss_dssp TCC--SHHHH-HHHT---THHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH------
T ss_pred Hhc--cHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH------
Confidence 111 11111 1111 13344444455556677888876 67888877763 56666788887777766653
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011925 195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (475)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~ 228 (475)
..++...+.+.+++.++..++.+...||++
T Consensus 375 ----~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 375 ----SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp ----HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred ----hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 346777777777777666666556566644
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-08 Score=101.50 Aligned_cols=152 Identities=9% Similarity=-0.024 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcc------cccchhhhHhHHHHHHHHHHHHHHHHH-HHH-hhhhHHHHH
Q 011925 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR------MGQSAKALVPAIIYICSFIVSILLQEM-AWT-GQRLKAYYS 321 (475)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~r~k~~~~ 321 (475)
|.++.+.+..++.....+....+++.|+.++.| .++.+.+++.....++..++.++.+++ +|+ ++ |+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~--r~~~~ 89 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGK--YNTIL 89 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCS--HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHH
Confidence 445666667777777888888999999998888 888888888888888888888887775 444 44 67777
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccc-hhhhhHHHHHHHHHHHHHHHHH
Q 011925 322 AGGVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGC-AFVCGTLSFLDKMSCGIAVYVL 400 (475)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~ig~~ig~~l~ 400 (475)
++..+..++.+...+.+ .+.+.+++..++.|++.+...+....+..+..+++++|. ...++..+....+|..+++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFE-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78777777766655533 255666777889999999998888888888888888871 1234447788888888888776
Q ss_pred HHhc
Q 011925 401 QSYQ 404 (475)
Q Consensus 401 ~~~~ 404 (475)
+.+.
T Consensus 169 ~~l~ 172 (524)
T 2xut_A 169 PLLL 172 (524)
T ss_dssp THHH
T ss_pred HHHh
Confidence 6554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.2e-08 Score=94.93 Aligned_cols=142 Identities=10% Similarity=0.064 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHH
Q 011925 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~~~~~~~~~~~~ 334 (475)
.+..++...........+|.+. ++.|.++.+.++......++..++.++.+++ +|.++ |+.+..+..+..++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~--r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR--RPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC--CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHH
Confidence 3344455555555666666654 5678888888888888888888888887765 33333 667777777777776665
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 011925 335 LILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~~ig~~l~~~~~ 404 (475)
.+. ++.+.+++..++.|++.+...+....+..+..++++++ ..++..+....+|..+++.+.+.+.
T Consensus 83 ~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 83 VTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 554 36667777888999999999998888888888888888 8889999999999999998887765
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=6.6e-08 Score=97.16 Aligned_cols=174 Identities=13% Similarity=0.009 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccc
Q 011925 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (475)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 121 (475)
.+..|.+.+.++.+.+.........+..+...+..++.+++.||+|||+.. +.+.....++...+.. . ......
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~-~~~~~~~~~~~~~l~~---~--~~~~~~ 368 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGT---A--FYTQAP 368 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHH---H--HHTTCC
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh-ccchHHHHHHHHHHHH---H--Hhcccc
Confidence 344556666666688888888888888888999999999999999998874 4444444443322210 0 001111
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhH-hhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHH
Q 011925 122 LKVETISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (475)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
......... +...+++... .....+.+|+.| .+.|++..++......+++.+++.+.+.+..... .....
T Consensus 369 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~fP-t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~----~~~~~ 439 (491)
T 4gc0_A 369 GIVALLSML----FYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW----LVAHF 439 (491)
T ss_dssp HHHHHHHHH----HHHHHHHTTTTHHHHHHHHHSSC-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH----HHHHH
T ss_pred hHHHHHHHH----HHHHHHHhHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhh
Confidence 111111111 1222222211 223466788887 6789999999888888888887766554432110 00122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011925 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (475)
Q Consensus 201 ~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~ 230 (475)
++...+++.+.++++..++.+++.||++..
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 344566677777888878778889997643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 475 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (87), Expect = 0.002
Identities = 31/357 (8%), Positives = 84/357 (23%), Gaps = 15/357 (4%)
Query: 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELI 83
+ +G +F + ++L DI +S + + + G L
Sbjct: 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLS 67
Query: 84 DRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
D+ G K + ++ + P + Y + G
Sbjct: 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGP------------LLQYNILVGSIVGGIYLG 115
Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203
+ M + A IV + T
Sbjct: 116 FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSG 175
Query: 204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTR 263
+ + F + +G ++ + F++ + ++L +
Sbjct: 176 CALI--LAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVS 233
Query: 264 LVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRLKAYYSAG 323
+V A + + G+ + + + + + ++ R+ +
Sbjct: 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL 293
Query: 324 GVLWVFCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAF 380
+ I + + +L ++V S +
Sbjct: 294 LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY 350
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.04 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.87 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.2e-30 Score=253.73 Aligned_cols=341 Identities=12% Similarity=0.023 Sum_probs=231.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHHHhcCCccCCccCCccchhh
Q 011925 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (475)
Q Consensus 45 ~~l~~~~~~~g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 124 (475)
+.+.++++|.|+|.+++|++.+++.+..++++|+.|+++||+||||.+ ..+.++.+++..+... .+ ....+...
T Consensus 45 ~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~-~~~~~~~~~~~~~~~~--~~---~~~~~~~~ 118 (447)
T d1pw4a_ 45 ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL-PAGLILAAAVMLFMGF--VP---WATSSIAV 118 (447)
T ss_dssp HHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHHH--CH---HHHSSSSH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHhhccc--cc---hhhhhHHH
Confidence 344456677799999999999999999999999999999999999974 4455555444432220 11 00011222
Q ss_pred hhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccchHHHHHH
Q 011925 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW 204 (475)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (475)
....+ .+.+++.+...++..+++.+..+ +++|++..++.+.+..+|..+++.+...+... ..+||+
T Consensus 119 -~~~~~---~~~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~---------~~~w~~ 184 (447)
T d1pw4a_ 119 -MFVLL---FLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---------FNDWHA 184 (447)
T ss_dssp -HHHHH---HHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---------TCCSTT
T ss_pred -HHHHH---HHHHHhhhhhhhHHHHHHHHHHH-hhcccccccccccccchhhhhhhhhhhhHhhh---------hhcccc
Confidence 22222 26777778888888889999886 78899999999999999988888777666543 236888
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccc----cC---------------CCcchHHHHHHHHhchhHHHHHHHHHHHHHH
Q 011925 205 IAYSSIFIGCCFVGIFLSRTEEPRLKMG----LR---------------GNSHARISWAYWFKKILYYQVALVYMLTRLV 265 (475)
Q Consensus 205 ~~~~~~~~~~i~~~~~~~~~~e~~~~~~----~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 265 (475)
.+++.+.+.++..++.+...+|+++... ++ +....+...++.+++|.++......++....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (447)
T d1pw4a_ 185 ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL 264 (447)
T ss_dssp CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhh
Confidence 7777766666665655555554332110 00 0011223456778888888887777788788
Q ss_pred HHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHH-HHHHHHHHHHHHHHHHhhcCCchHH
Q 011925 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKA-YYSAGGVLWVFCGAGILILPMNMSA 343 (475)
Q Consensus 266 ~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~-~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (475)
......+.|.|+.+..+.+..+.+.......+..+++.++.+++ +|..++.++ .......+...+..........+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
T d1pw4a_ 265 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 344 (447)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHH
Confidence 88889999999999889988877777777777888888887775 455544322 2222222333333333333344556
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhHHHHHHHHHH-HHHHHHHHHhcccC
Q 011925 344 FMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSC-GIAVYVLQSYQSMS 407 (475)
Q Consensus 344 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ig~-~ig~~l~~~~~~~~ 407 (475)
...++.++.|++.+...+....+..+..|++.+| ...|+.+...++++ .+++.+.+.+.+..
T Consensus 345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 345 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6566677788888777777777888888999888 88888888777754 44666666665433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.2e-24 Score=209.36 Aligned_cols=355 Identities=10% Similarity=0.047 Sum_probs=200.7
Q ss_pred CccceehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHH
Q 011925 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (475)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~ 100 (475)
|.++.+.+++..+...+..+...+++|.|++|. |+|+.++|++.+++.+...+.+|++|+++||+||||++++... ..
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~-~~ 83 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT-GM 83 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH-HH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH-HH
Confidence 345556667777778888888899999999887 9999999999999999999999999999999999998554433 33
Q ss_pred HHHHHHhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCC-CccchhhHhhHHHHHHHHHHHHH
Q 011925 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITL-NSTSRVVLTSCRNAFTMVANLSL 179 (475)
Q Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~-~~~~R~~~~~~~~~~~~~g~~~~ 179 (475)
.+...+... .+ ............. ...+.+.+....+......+..+ +.+++.+..+........+..++
T Consensus 84 ~~~~~~~~~--~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (417)
T d1pv7a_ 84 LVMFAPFFI--FI----FGPLLQYNILVGS---IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG 154 (417)
T ss_dssp HHTHHHHHH--HT----HHHHHHTTCHHHH---HHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hh----hhhhHHHHHHHHH---HHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccc
Confidence 333222220 01 0000001001111 01122222222222222221111 12334444555556666666666
Q ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc------CCCcchHHHHHHHHhchhHH
Q 011925 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYY 253 (475)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~l~~~~~~~ 253 (475)
+.+++.+.. .+|+..+........+...+.++..+|++..+++ +++....+..++..+++..+
T Consensus 155 ~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (417)
T d1pv7a_ 155 ASIVGIMFT-----------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHHH-----------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHH
T ss_pred ccccccccc-----------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccccccccccccccccccc
Confidence 666655542 2444444444444444444444444443322111 11222233444555555544
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhh---hcccccchhhhHhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHH
Q 011925 254 QVALVYMLTRLVVNVSQAYLAFYVIN---DLRMGQSAKALVPAIIYICSFIVSILLQEMAWTGQRL--KAYYSAGGVLWV 328 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~y~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--k~~~~~~~~~~~ 328 (475)
....................+.+... ..+.+....+.......++..++..+.++ +.||. |+.+.++..+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~r~~~~~~~~~~~~~~~ 300 (417)
T d1pv7a_ 224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL---IINRIGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHH---HHHHHCHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhh---hhcccccccchhhhHHHHH
Confidence 44433333333333333333333322 22333333334444444455555555444 34444 566777777777
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCCccchhhhhH-HHHHHHHHHHHHHHHHHHhc
Q 011925 329 FCGAGILILPMNMSAFMYVLAIFVGIANALMMVTGISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQ 404 (475)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~ig~~ig~~l~~~~~ 404 (475)
++.+.+.+.+ +.+..++..++.|++.+...+....+..+..|++.+| ..+++ .++...+|..+++.+.+.+.
T Consensus 301 ~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~~~~~G~l~ 373 (417)
T d1pv7a_ 301 VRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHTCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH--HHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred Hhhhcccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666655543 5666677788899999999998899999999999988 67775 45666788888887777665
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=5.7e-10 Score=108.09 Aligned_cols=174 Identities=8% Similarity=-0.049 Sum_probs=107.1
Q ss_pred ehccccchhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHHHHHH
Q 011925 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (475)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~i~~l~~~i~~p~~G~l~Dr~Grr~~~l~~~~~~~~~~~~ 105 (475)
+......+...........++|.|+.+. +.+..+.+....+..+...+..++.|+++||++||+...............
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (447)
T d1pw4a_ 252 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 331 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHH
Confidence 3444455555566666778889999988 999999999999999999999999999999999876533322222222211
Q ss_pred HhcCCccCCccCCccchhhhhHHHHHHHHHHHHHHhHhHhhhhhhhcccCCCccchhhHhhHHHHHHHH-HHHHHHHHHH
Q 011925 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAIAF 184 (475)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~-g~~~~~~~~~ 184 (475)
.... . .......+...+... +.+.+.+.......++..+..+ +++|++..++.+....+ |.+.++.+.+
T Consensus 332 ~~~~---~--~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~g~~~~~~~~g 401 (447)
T d1pw4a_ 332 TIVY---W--MNPAGNPTVDMICMI----VIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVG 401 (447)
T ss_dssp HHHT---T--SCCTTCHHHHHHHHH----HHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---H--hcccccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 111122222222222 4555555556666777788876 67899999887766555 4455566655
Q ss_pred HHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 011925 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (475)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (475)
.+.+ ..||+..+++.+...++..++.
T Consensus 402 ~~~~----------~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 402 YTVD----------FFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HHHH----------SSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----------HhChHHHHHHHHHHHHHHHHHH
Confidence 5543 2355655555544444443333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=6.1e-09 Score=98.80 Aligned_cols=90 Identities=13% Similarity=0.223 Sum_probs=71.1
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccchhhhHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHH
Q 011925 245 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAG 323 (475)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~k~~~~~~ 323 (475)
+.+|||++|.+.+.+++..+.......++|.|++++.|.++.+.+++.....++..++.++.|++ ||.++ |+.+.++
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~gr--r~~l~~~ 79 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGL--RKYLLWI 79 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--CTHHHHH
T ss_pred CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHH
Confidence 35799999999988888888888888999999999999999999988888888888888887775 55554 6666666
Q ss_pred HHHHHHHHHHHhh
Q 011925 324 GVLWVFCGAGILI 336 (475)
Q Consensus 324 ~~~~~~~~~~~~~ 336 (475)
.....++.....+
T Consensus 80 ~~~~~~~~~~~~~ 92 (417)
T d1pv7a_ 80 ITGMLVMFAPFFI 92 (417)
T ss_dssp HHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655544444
|