Citrus Sinensis ID: 011926

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----

MICIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV

ccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHccccCEEEEccccccccEEEECcccccccccccccccccccEEEEcccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccCEEEEccccccccccccccccccEEEEEccccEEEcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccEEEEEEcccccHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc

*ICIDCGMQVASK****AGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK****IEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV******************

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MICIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASxxxxxxxxxxxxxxxxxxxxxYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
RuBisCO large subunit-binding protein subunit alpha (Fragment)	This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer.	confident	P08824
60 kDa chaperonin 2	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	probable	Q2JKV7
60 kDa chaperonin 2	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	probable	Q8YVS8

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1KP8, chain A
Confidence level:very confident
Coverage over the Query: 3-461
View the alignment between query and template
View the model in PyMOL