Citrus Sinensis ID: 011926

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
MICIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV
ccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEcccccccccccccccccccEEEEcccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccEEEEEccccccccccccccccccEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEEcccccHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccccccccccc
micidcgmqvasktndsagdgtTTASVLAREIIKLGLLsvtsganpvslkrgidKTVHGLVEELEKrarpiegrddiKAVAtisagnddlIGTMIADAidkvgpdgvlsiessssfetTVEVEegmeidrgyispqfvtnpEKLIVEFENARVLVTDQKISAIKDIIPLLekttqlraPLLIIAEDVTGEALATLVVNKLRGILNVaaikapgfGERRKALLQDIAIVTgaefqagdlgllieNTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAetdsvydsEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAieegivpgggAALVHLSDHVPAIKDKLEDADERLGADIVQKALVapasliahnagveGEVVVEKVKdsewttgyNAMTDKYENMLqagvidpakVTRCALQNAASVAGMVLTTQAIvvekpkpktpvaappqglmv
micidcgmqvasktndsagdgTTTASVLAREIIKLGllsvtsganpvslkrgidktvHGLVEElekrarpiegrddikavatisagnddlIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENtsveqlgtarkvtirkdsttiiadaaskdeIQARIAQLKKElaetdsvydsEKLAERIAKLSGGVAVIKVgaateteledrklRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIahnagvegevvvEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAivvekpkpktpvaappqglmv
MICIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLsiessssfettveveeGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAgvegevvvekvkDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIvvekpkpktpvaappQGLMV
**CIDCG****************TASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELE*****IEGRDDIKAVATISAGNDDLIGTMIADAIDKV*************************IDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAA****IQARIAQL*********VYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV******************
*ICIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK********DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV******************
MICIDCGMQVASK**********TASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK**************
*****************AGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK**************
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MICIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASxxxxxxxxxxxxxxxxxxxxxYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query475 2.2.26 [Sep-21-2011]
P21239546 RuBisCO large subunit-bin N/A no 0.983 0.855 0.886 0.0
P08926587 RuBisCO large subunit-bin N/A no 0.983 0.795 0.886 0.0
P21238586 Chaperonin 60 subunit alp yes no 0.983 0.796 0.867 0.0
P08823543 RuBisCO large subunit-bin N/A no 0.981 0.858 0.839 0.0
P08824495 RuBisCO large subunit-bin N/A no 0.911 0.874 0.914 0.0
P34794583 RuBisCO large subunit-bin N/A no 0.978 0.797 0.856 0.0
Q42694580 RuBisCO large subunit-bin N/A no 0.955 0.782 0.744 0.0
Q2JKV7539 60 kDa chaperonin 2 OS=Sy yes no 0.978 0.862 0.592 1e-161
B0CFQ6558 60 kDa chaperonin 1 OS=Ac yes no 0.964 0.820 0.616 1e-160
Q3M6L5560 60 kDa chaperonin 2 OS=An yes no 0.962 0.816 0.631 1e-160
>sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2 Back     alignment and function desciption
 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/467 (88%), Positives = 447/467 (95%)

Query: 9   QVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRA 68
           +VASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEKRA
Sbjct: 80  EVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRA 139

Query: 69  RPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEI 128
           RP++G  DIKAVATISAGND+L+GTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEI
Sbjct: 140 RPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEI 199

Query: 129 DRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVT 188
           DRGYISPQFVTNPEKL+VEFENARVL+TDQKI+AIKDIIP+LEKTTQLRAPLLIIAEDVT
Sbjct: 200 DRGYISPQFVTNPEKLLVEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVT 259

Query: 189 GEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVE 248
           GEALATLVVNKLRG+LNV A+KAPGFGERRKA+LQDIAI+TGAE+QA D+GLL+ENT+++
Sbjct: 260 GEALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYQALDMGLLVENTTID 319

Query: 249 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGG 308
           QLG ARKVTI KDSTT+IADAASKDE+QARI+QLKKEL+ETDSVYDSEKLAERIAKL+GG
Sbjct: 320 QLGIARKVTISKDSTTLIADAASKDELQARISQLKKELSETDSVYDSEKLAERIAKLAGG 379

Query: 309 VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED 368
           VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+KLED
Sbjct: 380 VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLED 439

Query: 369 ADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGV 428
           ADERLGADIVQKALVAPA+LIA NAG+EGEVVVEK+  SEW  GYNAMTD YEN+L+AGV
Sbjct: 440 ADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLLEAGV 499

Query: 429 IDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV 475
           IDPAKVTRCALQNAASVAGMVLTTQAIVV+KPKPK P AAPPQGLMV
Sbjct: 500 IDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546
This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer.
Brassica napus (taxid: 3708)
>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2 Back     alignment and function description
>sp|P21238|CPNA1_ARATH Chaperonin 60 subunit alpha 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60A1 PE=1 SV=2 Back     alignment and function description
>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|P08824|RUBA_RICCO RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1 Back     alignment and function description
>sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 Back     alignment and function description
>sp|B0CFQ6|CH601_ACAM1 60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|Q3M6L5|CH602_ANAVT 60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
224104681 586 predicted protein [Populus trichocarpa] 0.983 0.796 0.918 0.0
359479362 586 PREDICTED: ruBisCO large subunit-binding 0.983 0.796 0.912 0.0
224132004 587 predicted protein [Populus trichocarpa] 0.976 0.790 0.915 0.0
1351030546 RecName: Full=RuBisCO large subunit-bind 0.983 0.855 0.886 0.0
449456032 583 PREDICTED: ruBisCO large subunit-binding 0.981 0.799 0.897 0.0
356542646 584 PREDICTED: ruBisCO large subunit-binding 0.983 0.799 0.905 0.0
84468456 588 putative rubisco subunit binding-protein 0.983 0.794 0.886 0.0
356539332 584 PREDICTED: ruBisCO large subunit-binding 0.983 0.799 0.903 0.0
84468296 588 putative rubisco subunit binding-protein 0.983 0.794 0.884 0.0
84468288 578 putative rubisco subunit binding-protein 0.983 0.807 0.884 0.0
>gi|224104681|ref|XP_002313525.1| predicted protein [Populus trichocarpa] gi|222849933|gb|EEE87480.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/467 (91%), Positives = 453/467 (97%)

Query: 9   QVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRA 68
           +VASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+K+GIDKTV GLVEELEKRA
Sbjct: 120 EVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKKGIDKTVQGLVEELEKRA 179

Query: 69  RPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEI 128
           RP++GRDDIKAVATISAGND+LIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEI
Sbjct: 180 RPVKGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEI 239

Query: 129 DRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVT 188
           DRGYISPQFVTNPEKLI  FENARVLVTDQKISAIKDIIPLLEKTTQLR+PLLIIAEDVT
Sbjct: 240 DRGYISPQFVTNPEKLICVFENARVLVTDQKISAIKDIIPLLEKTTQLRSPLLIIAEDVT 299

Query: 189 GEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVE 248
           GEALATLVVNKLRGILNV+AIKAPGFGERRKA+LQDIAI+TGAEFQA DLGL IENTS+E
Sbjct: 300 GEALATLVVNKLRGILNVSAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLSIENTSIE 359

Query: 249 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGG 308
           QLG ARKVTI KDSTTIIADAASKDE+QARIAQLKKEL+ETDSVYDSEKLAERIAKLSGG
Sbjct: 360 QLGLARKVTISKDSTTIIADAASKDELQARIAQLKKELSETDSVYDSEKLAERIAKLSGG 419

Query: 309 VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED 368
           VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS HVPAIK+K++D
Sbjct: 420 VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTHVPAIKEKIKD 479

Query: 369 ADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGV 428
           ADERLGADIVQKALVAPASLIA NAG+EGEVVVEK+K+SEW  GYNAMTDKYEN+++AGV
Sbjct: 480 ADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKLKESEWEMGYNAMTDKYENLVEAGV 539

Query: 429 IDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV 475
           IDPAKVTRCALQN+ASVAGMVLTTQAIVVEKPKP+TP AA PQGL V
Sbjct: 540 IDPAKVTRCALQNSASVAGMVLTTQAIVVEKPKPRTPAAASPQGLTV 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479362|ref|XP_002277357.2| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132004|ref|XP_002328161.1| predicted protein [Populus trichocarpa] gi|222837676|gb|EEE76041.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1351030|sp|P21239.2|RUB1_BRANA RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor gi|289365|gb|AAA32979.1| 60-kDa chaperonin-60 alpha-polypeptide precursor, partial [Brassica napus] Back     alignment and taxonomy information
>gi|449456032|ref|XP_004145754.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Cucumis sativus] gi|449496181|ref|XP_004160065.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356542646|ref|XP_003539777.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|84468456|dbj|BAE71311.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Back     alignment and taxonomy information
>gi|356539332|ref|XP_003538152.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|84468296|dbj|BAE71231.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] gi|84468304|dbj|BAE71235.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] gi|84468426|dbj|BAE71296.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Back     alignment and taxonomy information
>gi|84468288|dbj|BAE71227.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
TAIR|locus:2057841586 CPN60A "chaperonin-60alpha" [A 0.983 0.796 0.788 9.1e-187
TAIR|locus:2144955575 Cpn60alpha2 "chaperonin-60alph 0.941 0.777 0.580 2.5e-136
UNIPROTKB|Q05972541 groL1 "60 kDa chaperonin 1" [S 0.930 0.817 0.536 2.5e-120
TIGR_CMR|CJE_1356545 CJE_1356 "co-chaperonin GroEL" 0.928 0.809 0.524 6.4e-115
TIGR_CMR|CHY_0807540 CHY_0807 "chaperonin GroL" [Ca 0.936 0.824 0.523 8.2e-115
TIGR_CMR|GSU_3340544 GSU_3340 "60 kDa chaperonin" [ 0.934 0.816 0.505 3.5e-114
TIGR_CMR|BA_0267544 BA_0267 "chaperonin, 60 kDa" [ 0.932 0.814 0.521 7.3e-114
TIGR_CMR|SPO_0887546 SPO_0887 "chaperonin, 60 kDa" 0.936 0.815 0.495 1.6e-111
UNIPROTKB|P0A335540 groL "60 kDa chaperonin" [Stre 0.932 0.820 0.501 1.8e-110
TIGR_CMR|CBU_1718552 CBU_1718 "chaperonin, 60 kDa" 0.936 0.806 0.475 4.8e-110
TAIR|locus:2057841 CPN60A "chaperonin-60alpha" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1811 (642.6 bits), Expect = 9.1e-187, P = 9.1e-187
 Identities = 368/467 (78%), Positives = 403/467 (86%)

Query:     9 QVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRA 68
             +VASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV GL+EEL+K+A
Sbjct:   120 EVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA 179

Query:    69 RPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEI 128
             RP++GRDDI+AVA+ISAGNDDLIG+MIADAIDKVGPDGVL                GMEI
Sbjct:   180 RPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEI 239

Query:   129 DRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVT 188
             DRGYISPQFVTNPEKL+ EFENARVL+TDQKI+AIKDIIP+LEKTTQLRAPLLIIAEDVT
Sbjct:   240 DRGYISPQFVTNPEKLLAEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVT 299

Query:   189 GEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVE 248
             GEALATLVVNKLRG+LNV A+KAPGFGERRKA+LQDIAI+TGAE+ A D+ LL+EN +++
Sbjct:   300 GEALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYLAMDMSLLVENATID 359

Query:   249 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGG 308
             QLG ARKVTI KDSTT+IADAASKDE+QARIAQLKKEL ETDSVYDSEKLAERIAKLSGG
Sbjct:   360 QLGIARKVTISKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKLAERIAKLSGG 419

Query:   309 VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED 368
             VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  +PAIK+  ED
Sbjct:   420 VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFED 479

Query:   369 ADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTDKYENMLQAGV 428
             ADERLGADIVQKAL++PA+LIA NA             S+W  GYNAMTD YEN+ +AGV
Sbjct:   480 ADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGV 539

Query:   429 IDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 475
             IDPAKVTRCALQNAASVAGMVLTTQAI               +GLMV
Sbjct:   540 IDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006457 "protein folding" evidence=IEA;TAS
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0009658 "chloroplast organization" evidence=RCA;IMP
GO:0009790 "embryo development" evidence=IMP
GO:0005739 "mitochondrion" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
TAIR|locus:2144955 Cpn60alpha2 "chaperonin-60alpha2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1356 CJE_1356 "co-chaperonin GroEL" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0807 CHY_0807 "chaperonin GroL" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0267 BA_0267 "chaperonin, 60 kDa" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0887 SPO_0887 "chaperonin, 60 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P0A335 groL "60 kDa chaperonin" [Streptococcus pneumoniae TIGR4 (taxid:170187)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2JKV7CH602_SYNJBNo assigned EC number0.59220.97890.8627yesno
Q05972CH601_SYNY3No assigned EC number0.56430.960.8428N/Ano
Q8YVS8CH602_NOSS1No assigned EC number0.62680.96210.8160yesno
B0CFQ6CH601_ACAM1No assigned EC number0.61600.96420.8207yesno
B8E1A9CH60_DICTDNo assigned EC number0.55930.96630.8531yesno
Q7WVY0CH602_ANASLNo assigned EC number0.60380.96840.8258N/Ano
P22034CH602_SYNY3No assigned EC number0.58820.960.8260N/Ano
P34794RUB2_BRANANo assigned EC number0.85650.97890.7975N/Ano
P21238CPNA1_ARATHNo assigned EC number0.86720.98310.7969yesno
P21239RUB1_BRANANo assigned EC number0.88650.98310.8553N/Ano
Q42694RUBA_CHLRENo assigned EC number0.74440.95570.7827N/Ano
B5YDR9CH60_DICT6No assigned EC number0.55930.96630.8531yesno
C1A8L8CH60_GEMATNo assigned EC number0.55570.95150.8324yesno
Q7TV93CH602_PROMANo assigned EC number0.54720.95570.8330yesno
Q7TUS4CH602_PROMMNo assigned EC number0.54880.96420.8419yesno
A5GV53CH60_SYNR3No assigned EC number0.55310.96420.8372yesno
Q7MBB4CH602_GLOVINo assigned EC number0.58650.97050.8336yesno
P08823RUBA_WHEATNo assigned EC number0.83900.98100.8581N/Ano
Q2LTG7CH602_SYNASNo assigned EC number0.55160.95150.8293yesno
A2C4I2CH602_PROM1No assigned EC number0.54370.96840.8471yesno
Q318V6CH602_PROM9No assigned EC number0.53740.97470.8495yesno
B3DZP5CH60_METI4No assigned EC number0.55100.97470.8511yesno
B5YJN3CH60_THEYDNo assigned EC number0.56460.96630.85yesno
Q119S1CH601_TRIEINo assigned EC number0.60650.95570.8092yesno
Q3M6L5CH602_ANAVTNo assigned EC number0.63120.96210.8160yesno
Q2RL13CH601_MOOTANo assigned EC number0.56220.97260.8571yesno
Q5N3T6CH602_SYNP6No assigned EC number0.55210.96840.8288yesno
Q2JXD4CH601_SYNJANo assigned EC number0.59690.97470.8542yesno
P0A338CH602_THEVLNo assigned EC number0.58560.96210.8416N/Ano
P0A337CH602_THEEBNo assigned EC number0.58560.96210.8416yesno
O50323CH601_THEVLNo assigned EC number0.57140.95570.8330N/Ano
Q0I7U3CH602_SYNS3No assigned EC number0.55450.94940.8305yesno
A3PES4CH602_PROM0No assigned EC number0.53530.97470.8495yesno
A5GNA9CH602_SYNPWNo assigned EC number0.55960.96420.8419yesno
A2C6Z6CH601_PROM3No assigned EC number0.55090.96420.8419yesno
Q46J70CH601_PROMTNo assigned EC number0.55020.94940.8305yesno
P08926RUBA_PEANo assigned EC number0.88650.98310.7955N/Ano
P08824RUBA_RICCONo assigned EC number0.91450.91150.8747N/Ano
Q7TTX1CH601_SYNPXNo assigned EC number0.55740.96420.8419yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_IX0706
SubName- Full=Putative uncharacterized protein; (587 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2088.1
hypothetical protein (955 aa)
      • 0.588
estExt_fgenesh4_pm.C_LG_I0780
hypothetical protein (97 aa)
•     • 0.546
estExt_Genewise1_v1.C_LG_VIII0130
hypothetical protein (97 aa)
•     • 0.545
estExt_Genewise1_v1.C_LG_III0383
hypothetical protein (681 aa)
  •   • 0.526
estExt_fgenesh4_pg.C_LG_X1007
hypothetical protein (97 aa)
•     • 0.520
estExt_fgenesh4_pm.C_LG_IX0449
SubName- Full=Putative uncharacterized protein; (97 aa)
•     • 0.507
estExt_Genewise1_v1.C_LG_XVIII0619
hypothetical protein (258 aa)
• ••  • 0.499
estExt_Genewise1_v1.C_280199
SubName- Full=Putative uncharacterized protein; (256 aa)
• ••  • 0.487
grail3.3134000101
Predicted protein (100 aa)
      • 0.451
rps3
RecName- Full=30S ribosomal protein S3, chloroplastic; (74 aa)
  •     0.429

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.0
CHL00093529 CHL00093, groEL, chaperonin GroEL 0.0
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 0.0
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 0.0
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 0.0
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-171
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-161
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-151
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-127
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-102
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-93
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 6e-34
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 5e-10
cd03343517 cd03343, cpn60, cpn60 chaperonin family 4e-09
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 0.001
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 0.004
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  694 bits (1795), Expect = 0.0
 Identities = 267/450 (59%), Positives = 351/450 (78%), Gaps = 2/450 (0%)

Query: 9   QVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRA 68
           +VASKTND AGDGTTTA+VLAR IIK GL +V +GANP+ LKRGI+K V  +VEEL+K +
Sbjct: 73  EVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLS 132

Query: 69  RPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEI 128
           +P++ +++I  VATISA  D+ IG +IA+A++KVG DGV+++E   + ET +EV EGM+ 
Sbjct: 133 KPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQF 192

Query: 129 DRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVT 188
           DRGY+SP FVT+PEK+ VE EN  +L+TD+KIS+I++++P+LE   +   PLLIIAEDV 
Sbjct: 193 DRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVE 252

Query: 189 GEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVE 248
           GEALATLVVNKLRG L V A+KAPGFG+RRKA+L+DIAI+TG    + +LGL +E+ ++E
Sbjct: 253 GEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLE 312

Query: 249 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGG 308
            LG A+KV + KD TTII  A  K  I+ARIAQ++K++ ET S YD EKL ER+AKLSGG
Sbjct: 313 DLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGG 372

Query: 309 VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED 368
           VAVIKVG ATE EL+++K R+EDA NAT AA+EEGIVPGGG AL+  S  +  +  K  +
Sbjct: 373 VAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKL--KALN 430

Query: 369 ADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGV 428
            DE+LG +IV++AL AP   IA NAGV+G VVVEKV +S    GY+A T +Y +M++AG+
Sbjct: 431 GDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPDGFGYDAATGEYVDMIEAGI 490

Query: 429 IDPAKVTRCALQNAASVAGMVLTTQAIVVE 458
           IDP KV R ALQNAASVA ++LTT+A+VV+
Sbjct: 491 IDPTKVVRSALQNAASVASLLLTTEALVVD 520

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 475
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
CHL00093529 groEL chaperonin GroEL 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.97
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.97
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.47
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 94.47
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2e-95  Score=776.91  Aligned_cols=469  Identities=54%  Similarity=0.819  Sum_probs=447.0

Q ss_pred             HHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Q 011926            3 CIDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVAT   82 (475)
Q Consensus         3 ~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~   82 (475)
                      .-+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++.+.+.++|+
T Consensus        70 ~akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~  149 (541)
T PRK12851         70 GAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVAT  149 (541)
T ss_pred             HHHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            34799999999999999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HhccCChhHHhHHHHHHHHhCCCCccccccC-CCccchheeecceEEeecccCCccccCcccccceecceeEEEeccccC
Q 011926           83 ISAGNDDLIGTMIADAIDKVGPDGVLSIESS-SSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKIS  161 (475)
Q Consensus        83 ts~~~~~~l~~li~~a~~~~~~~g~I~v~~g-~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~  161 (475)
                      +|+++++.|++++++|+..++++|.|.++.+ ++..|+ ++++|++|+++|.+|+|++++++|+++++||+|+++|++++
T Consensus       150 ~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~  228 (541)
T PRK12851        150 ISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETEL-EVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS  228 (541)
T ss_pred             HhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcce-EEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC
Confidence            9998999999999999999998887776544 344455 99999999999999999999999999999999999999999


Q ss_pred             CHHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCcc
Q 011926          162 AIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLL  241 (475)
Q Consensus       162 ~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~  241 (475)
                      +.+++.++++++.+.|+||||++++|++.++++|..|+++|.++++|||+|+|+++++++|+|||++|||++++.+.+++
T Consensus       229 ~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~  308 (541)
T PRK12851        229 NLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIK  308 (541)
T ss_pred             cHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999777778


Q ss_pred             ccCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhH
Q 011926          242 IENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETE  321 (475)
Q Consensus       242 ~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~  321 (475)
                      ++++++++||+|+.+++.+++|++|+++++++.+..|+++++++++++.++++|++|++|++||+|+++||+|||+|+.+
T Consensus       309 ~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~  388 (541)
T PRK12851        309 LENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVE  388 (541)
T ss_pred             cCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 011926          322 LEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVV  401 (475)
Q Consensus       322 l~E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l  401 (475)
                      ++|++|+++||++++++++++|+|||||++|+++|+.|++++.. .+. +++++++|++||+.||++||+|||+|+.+++
T Consensus       389 l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~-~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl  466 (541)
T PRK12851        389 VKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGD-QRTGVEIVRRALEAPVRQIAENAGAEGSVVV  466 (541)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            99999999999999999999999999999999999999988765 565 5899999999999999999999999999999


Q ss_pred             HhhhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCCCCCCCCCCCC
Q 011926          402 EKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLM  474 (475)
Q Consensus       402 ~~l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~~~~~~~~~~  474 (475)
                      ++|++.+.++|||+.+|+++||++.|||||+.||.++|+.|+|+|++||+||++|+.+|++.++|+.||.|-|
T Consensus       467 ~~l~~~~~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~~~~  539 (541)
T PRK12851        467 GKLREKPGGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGGGM  539 (541)
T ss_pred             HHHHhhCCCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCCCCccc
Confidence            9999877789999999999999999999999999999999999999999999999999988888888888866

>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-122
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-119
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-115
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-115
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-115
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-115
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-115
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-115
1ss8_A524 Groel Length = 524 1e-114
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-114
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-114
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-114
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-114
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-114
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-114
1oel_A547 Conformational Variability In The Refined Structure 1e-114
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-113
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-113
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 8e-54
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 4e-53
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 2e-52
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-52
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 7e-52
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 1e-41
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 9e-41
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 1e-40
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 2e-37
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/449 (52%), Positives = 313/449 (69%), Gaps = 4/449 (0%)
Query: 9   QVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRA 68
           +VASKTND AGDGTTTA+VLA+ I++ GL +V +GANP++LKRGI+K V   VE+++  A
Sbjct: 75  EVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALA 134
Query: 69  RPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEI 128
            P+E R  I+ VATISA ND  +G +IADA++KVG +G++                G + 
Sbjct: 135 IPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQF 193
Query: 129 DRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVT 188
           D+GYISP FVTNPE +    E+A +L+ ++K+S +++++P+LE+  Q   PLLIIAEDV 
Sbjct: 194 DKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVE 253
Query: 189 GEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVE 248
           GEALATLVVNKLRG L+VAA+KAPGFG+RRK +L+DIA VTG    + +LG  +EN ++ 
Sbjct: 254 GEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLS 313
Query: 249 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGG 308
            LG A +V I KD TTI+     K++I+ARI  +KKEL  TDS Y  EKL ER+AKL+GG
Sbjct: 314 MLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGG 373
Query: 309 VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED 368
           VAVI+VGAATETEL+++K R EDA NAT AA+EEGIVPGGG  L+     V  +  KLE 
Sbjct: 374 VAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLE- 432
Query: 369 ADERLGADIVQKALVAPASLIAHNAXXXXXXXXXX--XXDSEWTTGYNAMTDKYENMLQA 426
            DE  GA IV++AL  PA  IA NA                    G+NA T ++ +M++A
Sbjct: 433 GDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEA 492
Query: 427 GVIDPAKVTRCALQNAASVAGMVLTTQAI 455
           G++DPAKVTR ALQNAAS+  ++LTT+A+
Sbjct: 493 GIVDPAKVTRSALQNAASIGALILTTEAV 521
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 0.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 1e-99
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 2e-97
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 1e-70
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 8e-18
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 2e-13
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 4e-13
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 4e-13
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 8e-13
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 9e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 2e-12
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 3e-12
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 3e-12
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 4e-12
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 4e-12
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 6e-12
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 2e-11
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 3e-11
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 5e-11
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 9e-11
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-10
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 2e-10
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 3e-09
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 3e-09
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 4e-05
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 6e-06
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-05
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
 Score =  675 bits (1745), Expect = 0.0
 Identities = 230/465 (49%), Positives = 325/465 (69%), Gaps = 2/465 (0%)

Query: 9   QVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRA 68
           +VASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  +
Sbjct: 75  EVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALS 134

Query: 69  RPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEI 128
            P      I  V TISA +D+ +G +IA+A+DKVG +GV+++E  +  +  ++V EGM+ 
Sbjct: 135 VPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQF 194

Query: 129 DRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVT 188
           DRGY+SP F+  PE   VE E+  +L+ D+KIS I++++P+LE   +   PLLIIAEDV 
Sbjct: 195 DRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVE 254

Query: 189 GEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVE 248
           GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIA +TG    + ++G+ +E  ++E
Sbjct: 255 GEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLE 314

Query: 249 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGG 308
            LG A++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GG
Sbjct: 315 DLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGG 374

Query: 309 VAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED 368
           VAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  ++   ++
Sbjct: 375 VAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG--QN 432

Query: 369 ADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGV 428
           AD+ +G  +  +A+ AP   I  N G E  VV   VK  +   GYNA T++Y NM+  G+
Sbjct: 433 ADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGI 492

Query: 429 IDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGL 473
           +DP KVTR ALQ AASVAG+++TT+ +V + PK          G+
Sbjct: 493 LDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAGGM 537
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.98
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.92
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.86
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
Probab=100.00  E-value=2.8e-102  Score=825.53  Aligned_cols=457  Identities=53%  Similarity=0.799  Sum_probs=424.2

Q ss_pred             HHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHH
Q 011926            4 IDCGMQVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATI   83 (475)
Q Consensus         4 ~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~i~~~~~l~~va~t   83 (475)
                      -+|++++|++||+++||||||+||||++||+++.+++.+|+||+.|++||++|++.++++|+++++|+++.+.|.++|++
T Consensus        70 Akll~e~a~~qd~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~~e~L~~vA~i  149 (546)
T 3rtk_A           70 AELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAI  149 (546)
T ss_dssp             HHHHHHHHTSCC-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHhHeEE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCChhHHhHHHHHHHHhCCCCccccccCCCcc-chheeecceEEeecccCCccccCcccccceecceeEEEeccccCC
Q 011926           84 SAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE-TTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISA  162 (475)
Q Consensus        84 s~~~~~~l~~li~~a~~~~~~~g~I~v~~g~~~~-ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~  162 (475)
                      |++ ++++++++++|+.+++++|.|+++.+++.. |+ ++++|++|+++|+||||++++++|+++++||+|+++|++|++
T Consensus       150 S~~-~~~i~~liadAv~~V~~dgvI~Ve~~~~~~~ds-~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs~  227 (546)
T 3rtk_A          150 SAG-DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQL-ELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVST  227 (546)
T ss_dssp             HHT-CHHHHHHHHHHHHHSCTTSEEEEECCSSSSCEE-EEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEECC
T ss_pred             eCC-chHHHHHHHHHHHHhccCCceEEEecCCcccce-EEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccCC
Confidence            998 899999999999999999999987665554 55 999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcccccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccc
Q 011926          163 IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLI  242 (475)
Q Consensus       163 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~  242 (475)
                      ++++.++++++.++|+||||++++|+++|+++|+.|+++|++++++||+|+|++.++++|+|||++|||++++++.++++
T Consensus       228 ~~~l~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l  307 (546)
T 3rtk_A          228 VKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTL  307 (546)
T ss_dssp             STTTHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             cCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCChhHH
Q 011926          243 ENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETEL  322 (475)
Q Consensus       243 ~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~e~~~l~~r~~~l~~~~~TI~lrG~t~~~l  322 (475)
                      +++++++||+|++|+++++++++|+||++++.+..|+++|+++++++.++|+|++|+||+++|+|++|||+|||+|+.++
T Consensus       308 ~~~~~~~LG~a~~v~i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l  387 (546)
T 3rtk_A          308 ENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVEL  387 (546)
T ss_dssp             TTCCTTTSEEEEEEEECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHH
T ss_pred             ccCCHhhCCeeEEEEEcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcCCcchhHHHHhHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Q 011926          323 EDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVE  402 (475)
Q Consensus       323 ~E~~r~~~dal~~~~~~~~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~  402 (475)
                      +|++|+++||++++|+++++|+|||||++|+++|++|++++  .++. +|+++++|++||+.||++||+|||+|+.++++
T Consensus       388 ~E~er~l~DAl~a~r~av~~giVpGGGa~e~~~s~~L~~~~--~~g~-eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~  464 (546)
T 3rtk_A          388 KERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQAAPTLDELK--LEGD-EATGANIVKVALEAPLKQIAFNSGLEPGVVAE  464 (546)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCEEETTTHHHHTTGGGSTTSC--CCTT-HHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCcHHHHHHHHHHHHhc--cccH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            99999999999999999999999999999999999999987  5666 58999999999999999999999999999999


Q ss_pred             hhhcCCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHHchhHHhhcCCCCCCC
Q 011926          403 KVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTP  465 (475)
Q Consensus       403 ~l~~~~~~~G~d~~~g~i~d~~~~gI~Dp~~vk~~~l~~A~e~a~~lL~iD~iI~~~p~~~~~  465 (475)
                      +|++....+|||+.+|++.||++.|||||+.||+++|++|+|+|++|||+|++|..+|+++++
T Consensus       465 ~l~~~~~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~  527 (546)
T 3rtk_A          465 KVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEKA  527 (546)
T ss_dssp             HHHHSCTTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred             HHHhhcCCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            999865669999999999999999999999999999999999999999999999999987653
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 475
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 5e-82
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 4e-81
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 1e-79
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 9e-67
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-41
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 5e-14
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 2e-38
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 3e-20
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-31
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 5e-13
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 4e-24
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 2e-12
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 4e-22
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 0.001
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 4e-20
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 4e-17
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 0.001
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 6e-17
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 5e-16
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 4e-08
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-15
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 3e-14
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 6e-15
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-07
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score =  249 bits (637), Expect = 5e-82
 Identities = 98/184 (53%), Positives = 131/184 (71%)

Query: 125 GMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIA 184
           GM  D+GYIS  FVT+PE+     E+  +L+   K+S +KD++PLLEK      PLLIIA
Sbjct: 1   GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60

Query: 185 EDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIEN 244
           EDV GEAL+TLVVNK+RG     A+KAPGFG+RRKA+LQD+AI+TG +  + ++GL +EN
Sbjct: 61  EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120

Query: 245 TSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAK 304
             +  LG ARKV + KD TTI+  A   D I  R+AQ+++E+  +DS YD EKL ER+AK
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180

Query: 305 LSGG 308
           L+GG
Sbjct: 181 LAGG 184
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.96
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.95
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.94
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.87
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.87
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.85
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.85
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.84
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.81
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.65
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.62
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.41
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.33
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.31
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.05
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.01
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 98.96
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.64
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.58
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.56
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 96.69
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 95.61
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-38  Score=289.69  Aligned_cols=189  Identities=53%  Similarity=0.871  Sum_probs=184.8

Q ss_pred             eeecceEEeecccCCccccCcccccceecceeEEEeccccCCHHhhHHHHHHHHhcCCCEEEEeccCChHHHHHHHHhcc
Q 011926          121 EVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKL  200 (475)
Q Consensus       121 ~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il~~~~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~~~~  200 (475)
                      ++.+|+.|++||.||||+++++++..+++||+||++|.+|++.+++.|+|+.+.+.+.||+|++++|+++||+.|+.|+.
T Consensus         5 ~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~   84 (193)
T d1kida_           5 RGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM   84 (193)
T ss_dssp             SCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHH
T ss_pred             cccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhh
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEEeeCCCcccchHHHHHHHHHHhCCeEeccccCccccCCCccccceeEEEEEecceEEEEeCCCChHHHHHHHH
Q 011926          201 RGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIA  280 (475)
Q Consensus       201 ~g~~~v~av~~~~~~~~~~~~l~~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~i~  280 (475)
                      +|.++|+|||+|+|++.+++.|+|||.+|||++++++.+.++++++.++||+|+++.+++++|+++++.++++.+++|++
T Consensus        85 kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri~  164 (193)
T d1kida_          85 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA  164 (193)
T ss_dssp             TTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred             ccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccchhhHHHHHHHHHHhcCCe
Q 011926          281 QLKKELAETDSVYDSEKLAERIAKLSGGV  309 (475)
Q Consensus       281 ~l~~~l~~~~~~~e~~~l~~r~~~l~~~~  309 (475)
                      +|+.+++++.++++++++++|+++|+|++
T Consensus       165 ~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         165 QIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999874
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure