Citrus Sinensis ID: 011934

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----

MEKKSQHQSSSLIRKTDGEDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEADNESDGELTMWDMEQRILCA

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEEEEEcccccccEEEcccccEEEEEEEccEEEEEEccEEEEcccEEEEEccEEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEcccccEEEEEccccccEEEcccccccccccccccccccccEEEEcccccccEEEEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccEEEccccccccccHHHHHHHHHcccccccEEEcccEEEEEEccccccccHHHHHcccccHHHHHcHHHHHccccccccccccccccccccccHHcccc

ccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccEHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEHccEEEEcccccHHHcccEEEEEEEEcccccccEEEcccccEEEEcccccEEEEEEcEEEEEcccEEEEEcccEEEEEEcccccccEEEEEccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccEEEEEEcccccccEEEEcccccccEEcHHHcccccEEEEccccccEEEEEEccccccccEEEEEEEccccEEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccHccccccccccHHHHHHHHHcHHcccccHHcccHEEEEcccccccccHHHHHcHHHcHHHHHHHHHHHHHccccccccccccccccccHHHHEHcc

mekksqhqssslirktdgedfsdlnyesgfgnsfsseaidgalprgqnsplvcpfglyaeqisgtsftsprklnqrrikpsathepfkprvpahgklvsefdksnsyttptqlrwkpvdipdsptdfidGLYTIcgagssflRHGYAIHMYTanksmdncafcnadgdflvvpqkgrlwiatecgklevspgeiavlpqgfrfavslpdgpsrgyIAEIFgthfqlpdlgpiganglaaprdflvptawfeegsrlGYTIVQKFGGelftarqdfspfnvvawhgnyvpykydlskfcpfntvlvdhgdpsintvltaptdkpgvalldfvifpprwlvaehtfrppyyhrncmsefmglirggyeakadgflpggaslhscmtphgpdtktyEATIargseagpykitDTMAFMFEsclipricpwalespfmdhdyyrcwiglrshfsyeeadnesdgelTMWDMEQRILCA

mekksqhqssslirktdgedfsdLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQisgtsftsprklnqrrikpsathepfkprvpahgklvsefdksnsyttptqlrwkpvdiPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEAdnesdgeltmWDMEQRILCA

*************************************************PLVCPFGLYAEQI*************************************************QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMT*******TYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYE**********************

************************NYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYT***********IPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEAT******AGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS***********LTMWDMEQRILCA

*************RKTDGEDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEADNESDGELTMWDMEQRILCA

************************NYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSY********GELTMWDMEQRILCA

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		474	2.2.26 [Sep-21-2011]
Q9ZRA2		461	Homogentisate 1,2-dioxyge	yes	no	0.909	0.934	0.825	0.0
Q5VRH4		470	Homogentisate 1,2-dioxyge	yes	no	0.915	0.923	0.771	0.0
Q54QI4		432	Homogentisate 1,2-dioxyge	yes	no	0.879	0.965	0.604	1e-144
O09173		445	Homogentisate 1,2-dioxyge	yes	no	0.890	0.948	0.557	1e-136
Q93099		445	Homogentisate 1,2-dioxyge	yes	no	0.892	0.950	0.558	1e-135
A0K4Z6		444	Homogentisate 1,2-dioxyge	yes	no	0.896	0.957	0.548	1e-134
Q1BYQ6		444	Homogentisate 1,2-dioxyge	yes	no	0.896	0.957	0.548	1e-134
Q5RF05		445	Homogentisate 1,2-dioxyge	yes	no	0.892	0.950	0.554	1e-133
Q39J54		444	Homogentisate 1,2-dioxyge	yes	no	0.905	0.966	0.536	1e-133
B1YTZ1		444	Homogentisate 1,2-dioxyge	yes	no	0.896	0.957	0.548	1e-133

>sp\|Q9ZRA2\|HGD_ARATH Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2	Back alignment and function desciption

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/435 (82%), Positives = 386/435 (88%), Gaps = 4/435 (0%)

Query: 26  YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPS 81
           Y+SGFGN FSSEAI GALP  QNSPL+CP+GLYAEQISGTSFTSPRKLNQR    R+KPS
Sbjct: 13  YQSGFGNHFSSEAIAGALPLDQNSPLLCPYGLYAEQISGTSFTSPRKLNQRSWLYRVKPS 72

Query: 82  ATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSF 141
            THEPFKPRVPAH KLVSEFD SNS T PTQLRW+P DIPDS  DF+DGL+TICGAGSSF
Sbjct: 73  VTHEPFKPRVPAHKKLVSEFDASNSRTNPTQLRWRPEDIPDSEIDFVDGLFTICGAGSSF 132

Query: 142 LRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGF 201
           LRHG+AIHMY AN  M + AFCNADGDFL+VPQ GRLWI TECG+L V+PGEIAV+PQGF
Sbjct: 133 LRHGFAIHMYVANTGMKDSAFCNADGDFLLVPQTGRLWIETECGRLLVTPGEIAVIPQGF 192

Query: 202 RFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIV 261
           RF++ LPDG SRGY+AEI+G HFQLPDLGPIGANGLAA RDFL PTAWFE+G R  YTIV
Sbjct: 193 RFSIDLPDGKSRGYVAEIYGAHFQLPDLGPIGANGLAASRDFLAPTAWFEDGLRPEYTIV 252

Query: 262 QKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTD 321
           QKFGGELFTA+QDFSPFNVVAWHGNYVPYKYDL KFCP+NTVL+DHGDPSINTVLTAPTD
Sbjct: 253 QKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLKKFCPYNTVLLDHGDPSINTVLTAPTD 312

Query: 322 KPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHS 381
           KPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI G YEAKADGFLPGGASLHS
Sbjct: 313 KPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKADGFLPGGASLHS 372

Query: 382 CMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRC 441
           CMTPHGPDT TYEATIAR +   P K+T TMAFMFES LIPR+C WALESPF+DHDYY+C
Sbjct: 373 CMTPHGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHDYYQC 432

Query: 442 WIGLRSHFSYEEADN 456
           WIGL+SHFS    D 
Sbjct: 433 WIGLKSHFSRISLDK 447

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 5

>sp\|Q5VRH4\|HGD_ORYSJ Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1	Back alignment and function description

>sp\|Q54QI4\|HGD_DICDI Homogentisate 1,2-dioxygenase OS=Dictyostelium discoideum GN=hgd PE=2 SV=1	Back alignment and function description

>sp\|O09173\|HGD_MOUSE Homogentisate 1,2-dioxygenase OS=Mus musculus GN=Hgd PE=1 SV=2	Back alignment and function description

>sp\|Q93099\|HGD_HUMAN Homogentisate 1,2-dioxygenase OS=Homo sapiens GN=HGD PE=1 SV=2	Back alignment and function description

>sp\|A0K4Z6\|HGD_BURCH Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain HI2424) GN=hmgA PE=3 SV=1	Back alignment and function description

>sp\|Q1BYQ6\|HGD_BURCA Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain AU 1054) GN=hmgA PE=3 SV=1	Back alignment and function description

>sp\|Q5RF05\|HGD_PONAB Homogentisate 1,2-dioxygenase OS=Pongo abelii GN=HGD PE=2 SV=1	Back alignment and function description

>sp\|Q39J54\|HGD_BURS3 Homogentisate 1,2-dioxygenase OS=Burkholderia sp. (strain 383) GN=hmgA PE=3 SV=1	Back alignment and function description

>sp\|B1YTZ1\|HGD_BURA4 Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain MC40-6) GN=hmgA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		474
225461591		463	PREDICTED: homogentisate 1,2-dioxygenase	0.945	0.967	0.847	0.0
255554698		457	homogentisate 1,2-dioxygenase, putative	0.938	0.973	0.847	0.0
8131905		477	homogentisate 1,2-dioxygenase [Solanum l	0.905	0.899	0.859	0.0
449438877		471	PREDICTED: homogentisate 1,2-dioxygenase	0.962	0.968	0.800	0.0
297792833		461	homogentisate 1,2-dioxygenase [Arabidops	0.896	0.921	0.848	0.0
224056539		464	predicted protein [Populus trichocarpa]	0.955	0.976	0.804	0.0
21594040		461	homogentisate 1,2-dioxygenase [Arabidops	0.909	0.934	0.836	0.0
356543235		455	PREDICTED: homogentisate 1,2-dioxygenase	0.926	0.964	0.814	0.0
15239545		461	homogentisate 1,2-dioxygenase [Arabidops	0.909	0.934	0.825	0.0
4098647		461	homogentisate 1,2-dioxygenase [Arabidops	0.909	0.934	0.822	0.0

>gi\|225461591\|ref\|XP_002285298.1\| PREDICTED: homogentisate 1,2-dioxygenase [Vitis vinifera] gi\|302142933\|emb\|CBI20228.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/452 (84%), Positives = 410/452 (90%), Gaps = 4/452 (0%)

Query: 11  SLIRKTDGEDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSP 70
           S+ +  D +  SDL Y+ GFGN  SSEAI GALPRGQN+PL CPFGLYAEQISGT FT+P
Sbjct: 5   SVSKTNDSDPPSDLQYQFGFGNHLSSEAIAGALPRGQNNPLTCPFGLYAEQISGTPFTAP 64

Query: 71  RKLNQ----RRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTD 126
           RK NQ     RIKPS THEPFKPRVP+HGKLVSEF++SNS T PTQLRWKPV+IPDSPTD
Sbjct: 65  RKQNQFSWLYRIKPSVTHEPFKPRVPSHGKLVSEFNQSNSSTNPTQLRWKPVEIPDSPTD 124

Query: 127 FIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGK 186
           FIDGLYT+CGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFL+VPQKGRL I TECGK
Sbjct: 125 FIDGLYTVCGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLIVPQKGRLSITTECGK 184

Query: 187 LEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVP 246
           L+VSPGEI VLP GFRF V LPDGPSRGY+AEIFG HFQLPDLGPIGANGLAA RDFLVP
Sbjct: 185 LQVSPGEIVVLPHGFRFVVDLPDGPSRGYVAEIFGAHFQLPDLGPIGANGLAASRDFLVP 244

Query: 247 TAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVD 306
            AW+EE SR GYTIVQKFGGELFTA+QDFSPFNVVAWHGNYVPYKYDLSKFCP NTVL D
Sbjct: 245 VAWYEECSRPGYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLKD 304

Query: 307 HGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYE 366
           H DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI GGYE
Sbjct: 305 HADPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYE 364

Query: 367 AKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICP 426
           AKADGFLPGGASLHSCMTPHGPDTKT+EAT+A G +AGP++IT+TMAFMFESCLIPRICP
Sbjct: 365 AKADGFLPGGASLHSCMTPHGPDTKTFEATVAHGKDAGPFRITNTMAFMFESCLIPRICP 424

Query: 427 WALESPFMDHDYYRCWIGLRSHFSYEEADNES 458
           WAL+SP +DHDYY+CW+GLRSHFS EEA +ES
Sbjct: 425 WALDSPSIDHDYYQCWVGLRSHFSREEASDES 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255554698\|ref\|XP_002518387.1\| homogentisate 1,2-dioxygenase, putative [Ricinus communis] gi\|223542482\|gb\|EEF44023.1\| homogentisate 1,2-dioxygenase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|8131905\|gb\|AAF73132.1\|AF149017_1 homogentisate 1,2-dioxygenase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|449438877\|ref\|XP_004137214.1\| PREDICTED: homogentisate 1,2-dioxygenase-like [Cucumis sativus] gi\|449524824\|ref\|XP_004169421.1\| PREDICTED: homogentisate 1,2-dioxygenase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297792833\|ref\|XP_002864301.1\| homogentisate 1,2-dioxygenase [Arabidopsis lyrata subsp. lyrata] gi\|297310136\|gb\|EFH40560.1\| homogentisate 1,2-dioxygenase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|224056539\|ref\|XP_002298900.1\| predicted protein [Populus trichocarpa] gi\|222846158\|gb\|EEE83705.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|21594040\|gb\|AAM65958.1\| homogentisate 1,2-dioxygenase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356543235\|ref\|XP_003540068.1\| PREDICTED: homogentisate 1,2-dioxygenase-like [Glycine max]	Back alignment and taxonomy information

>gi|15239545|ref|NP_200219.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|30696407|ref|NP_851187.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|13432134|sp|Q9ZRA2.2|HGD_ARATH RecName: Full=Homogentisate 1,2-dioxygenase; AltName: Full=Homogentisate oxygenase; AltName: Full=Homogentisic acid oxidase; AltName: Full=Homogentisicase gi|7108615|gb|AAF36499.1|AF130845_1 homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|8809579|dbj|BAA97130.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|22655252|gb|AAM98216.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|33942055|gb|AAQ55280.1| At5g54080 [Arabidopsis thaliana] gi|332009064|gb|AED96447.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|332009065|gb|AED96448.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|4098647\|gb\|AAD00360.1\| homogentisate 1,2-dioxygenase [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		474
TAIR\|locus:2166567		461	HGO "AT5G54080" [Arabidopsis t	0.911	0.937	0.823	7.7e-206
DICTYBASE\|DDB_G0283765		432	hgd "homogentisic acid oxidase	0.879	0.965	0.604	1.5e-136
ZFIN\|ZDB-GENE-020802-5		443	hgd "homogentisate 1,2-dioxyge	0.886	0.948	0.578	3.8e-133
MGI\|MGI:96078		445	Hgd "homogentisate 1, 2-dioxyg	0.888	0.946	0.558	6.4e-131
UNIPROTKB\|Q93099		445	HGD "Homogentisate 1,2-dioxyge	0.890	0.948	0.560	1.2e-129
UNIPROTKB\|E1C3Y2		434	HGD "Uncharacterized protein"	0.875	0.956	0.572	4e-129
UNIPROTKB\|I3LTZ3		445	HGD "Uncharacterized protein"	0.890	0.948	0.557	1.1e-128
UNIPROTKB\|G3V6C2		445	Hgd "RCG52860, isoform CRA_b"	0.890	0.948	0.546	3.6e-128
UNIPROTKB\|F1Q313		445	HGD "Uncharacterized protein"	0.890	0.948	0.553	4.6e-128
RGD\|1308757		445	Hgd "homogentisate 1, 2-dioxyg	0.890	0.948	0.544	1.2e-127

TAIR\|locus:2166567 HGO "AT5G54080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1991 (705.9 bits), Expect = 7.7e-206, P = 7.7e-206
 Identities = 359/436 (82%), Positives = 389/436 (89%)

Query:    19 EDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR-- 76
             ++  +L Y+SGFGN FSSEAI GALP  QNSPL+CP+GLYAEQISGTSFTSPRKLNQR  
Sbjct:     6 KELEELKYQSGFGNHFSSEAIAGALPLDQNSPLLCPYGLYAEQISGTSFTSPRKLNQRSW 65

Query:    77 --RIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTI 134
               R+KPS THEPFKPRVPAH KLVSEFD SNS T PTQLRW+P DIPDS  DF+DGL+TI
Sbjct:    66 LYRVKPSVTHEPFKPRVPAHKKLVSEFDASNSRTNPTQLRWRPEDIPDSEIDFVDGLFTI 125

Query:   135 CGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEI 194
             CGAGSSFLRHG+AIHMY AN  M + AFCNADGDFL+VPQ GRLWI TECG+L V+PGEI
Sbjct:   126 CGAGSSFLRHGFAIHMYVANTGMKDSAFCNADGDFLLVPQTGRLWIETECGRLLVTPGEI 185

Query:   195 AVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGS 254
             AV+PQGFRF++ LPDG SRGY+AEI+G HFQLPDLGPIGANGLAA RDFL PTAWFE+G 
Sbjct:   186 AVIPQGFRFSIDLPDGKSRGYVAEIYGAHFQLPDLGPIGANGLAASRDFLAPTAWFEDGL 245

Query:   255 RLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINT 314
             R  YTIVQKFGGELFTA+QDFSPFNVVAWHGNYVPYKYDL KFCP+NTVL+DHGDPSINT
Sbjct:   246 RPEYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLKKFCPYNTVLLDHGDPSINT 305

Query:   315 VLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLP 374
             VLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI G YEAKADGFLP
Sbjct:   306 VLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKADGFLP 365

Query:   375 GGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFM 434
             GGASLHSCMTPHGPDT TYEATIAR +   P K+T TMAFMFES LIPR+C WALESPF+
Sbjct:   366 GGASLHSCMTPHGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFL 425

Query:   435 DHDYYRCWIGLRSHFS 450
             DHDYY+CWIGL+SHFS
Sbjct:   426 DHDYYQCWIGLKSHFS 441

GO:0004411 "homogentisate 1,2-dioxygenase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006559 "L-phenylalanine catabolic process" evidence=ISS

GO:0006572 "tyrosine catabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:1902000 "homogentisate catabolic process" evidence=IDA

DICTYBASE\|DDB_G0283765 hgd "homogentisic acid oxidase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-020802-5 hgd "homogentisate 1,2-dioxygenase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:96078 Hgd "homogentisate 1, 2-dioxygenase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q93099 HGD "Homogentisate 1,2-dioxygenase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C3Y2 HGD "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LTZ3 HGD "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V6C2 Hgd "RCG52860, isoform CRA_b" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q313 HGD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1308757 Hgd "homogentisate 1, 2-dioxygenase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93099	HGD_HUMAN	1, ., 1, 3, ., 1, 1, ., 5	0.5588	0.8924	0.9505	yes	no
Q5VRH4	HGD_ORYSJ	1, ., 1, 3, ., 1, 1, ., 5	0.7714	0.9156	0.9234	yes	no
Q5GVE9	HGD_XANOR	1, ., 1, 3, ., 1, 1, ., 5	0.5114	0.9029	0.9705	yes	no
B7VA96	HGD_PSEA8	1, ., 1, 3, ., 1, 1, ., 5	0.5448	0.8881	0.9745	yes	no
A9I714	HGD_BORPD	1, ., 1, 3, ., 1, 1, ., 5	0.5357	0.8818	0.9675	yes	no
B0T816	HGD_CAUSK	1, ., 1, 3, ., 1, 1, ., 5	0.5406	0.8691	0.9648	yes	no
Q54QI4	HGD_DICDI	1, ., 1, 3, ., 1, 1, ., 5	0.6041	0.8797	0.9652	yes	no
Q2NYM7	HGD_XANOM	1, ., 1, 3, ., 1, 1, ., 5	0.5136	0.9029	0.9705	yes	no
Q63RD3	HGD_BURPS	1, ., 1, 3, ., 1, 1, ., 5	0.5327	0.9092	0.9577	yes	no
B1YTZ1	HGD_BURA4	1, ., 1, 3, ., 1, 1, ., 5	0.5483	0.8966	0.9572	yes	no
Q1D8L9	HGD_MYXXD	1, ., 1, 3, ., 1, 1, ., 5	0.5633	0.8734	0.9473	yes	no
A4JBW6	HGD_BURVG	1, ., 1, 3, ., 1, 1, ., 5	0.5414	0.8966	0.9572	yes	no
Q7WNZ3	HGD_BORBR	1, ., 1, 3, ., 1, 1, ., 5	0.5319	0.8924	0.9791	yes	no
A3NYN0	HGD_BURP0	1, ., 1, 3, ., 1, 1, ., 5	0.5327	0.9092	0.9577	yes	no
A0K4Z6	HGD_BURCH	1, ., 1, 3, ., 1, 1, ., 5	0.5483	0.8966	0.9572	yes	no
Q9ZRA2	HGD_ARATH	1, ., 1, 3, ., 1, 1, ., 5	0.8252	0.9092	0.9349	yes	no
A3MMH2	HGD_BURM7	1, ., 1, 3, ., 1, 1, ., 5	0.5327	0.9092	0.9577	yes	no
Q62I34	HGD_BURMA	1, ., 1, 3, ., 1, 1, ., 5	0.5327	0.9092	0.9577	yes	no
Q4UZI9	HGD_XANC8	1, ., 1, 3, ., 1, 1, ., 5	0.5191	0.8924	0.9296	yes	no
Q46UA4	HGD_CUPPJ	1, ., 1, 3, ., 1, 1, ., 5	0.5264	0.8924	0.9635	yes	no
A6V6F5	HGD_PSEA7	1, ., 1, 3, ., 1, 1, ., 5	0.5425	0.8881	0.9745	yes	no
Q3JPA3	HGD_BURP1	1, ., 1, 3, ., 1, 1, ., 5	0.5327	0.9092	0.9577	yes	no
Q0K0L8	HGD_CUPNH	1, ., 1, 3, ., 1, 1, ., 5	0.5252	0.8945	0.9658	yes	no
Q1BYQ6	HGD_BURCA	1, ., 1, 3, ., 1, 1, ., 5	0.5483	0.8966	0.9572	yes	no
B8H072	HGD_CAUCN	1, ., 1, 3, ., 1, 1, ., 5	0.5480	0.8734	0.9741	yes	no
Q87Z79	HGD_PSESM	1, ., 1, 3, ., 1, 1, ., 5	0.5273	0.8945	0.9769	yes	no
A2S9M1	HGD_BURM9	1, ., 1, 3, ., 1, 1, ., 5	0.5327	0.9092	0.9577	yes	no
Q7W189	HGD_BORPA	1, ., 1, 3, ., 1, 1, ., 5	0.5319	0.8924	0.9791	yes	no
Q2SYQ6	HGD_BURTA	1, ., 1, 3, ., 1, 1, ., 5	0.5327	0.9092	0.9577	yes	no
B2SM18	HGD_XANOP	1, ., 1, 3, ., 1, 1, ., 5	0.5136	0.9029	0.9705	yes	no
Q9A5B8	HGD_CAUCR	1, ., 1, 3, ., 1, 1, ., 5	0.5480	0.8734	0.9741	yes	no
B4ECX5	HGD_BURCJ	1, ., 1, 3, ., 1, 1, ., 5	0.5448	0.8945	0.9549	yes	no
Q02LF6	HGD_PSEAB	1, ., 1, 3, ., 1, 1, ., 5	0.5425	0.8881	0.9745	yes	no
Q5RF05	HGD_PONAB	1, ., 1, 3, ., 1, 1, ., 5	0.5542	0.8924	0.9505	yes	no
B2UJ73	HGD_RALPJ	1, ., 1, 3, ., 1, 1, ., 5	0.5420	0.8818	0.9330	yes	no
Q8XRZ0	HGD_RALSO	1, ., 1, 3, ., 1, 1, ., 5	0.5454	0.8797	0.9308	yes	no
Q9Y041	HGD_CAEEL	1, ., 1, 3, ., 1, 1, ., 5	0.5512	0.8945	0.9702	yes	no
A1V1U3	HGD_BURMS	1, ., 1, 3, ., 1, 1, ., 5	0.5327	0.9092	0.9577	yes	no
O09173	HGD_MOUSE	1, ., 1, 3, ., 1, 1, ., 5	0.5575	0.8902	0.9483	yes	no
Q4KI35	HGD_PSEF5	1, ., 1, 3, ., 1, 1, ., 5	0.5460	0.8818	0.9631	yes	no
Q9VKJ0	HGD_DROME	1, ., 1, 3, ., 1, 1, ., 5	0.5568	0.8924	0.9635	yes	no
Q39J54	HGD_BURS3	1, ., 1, 3, ., 1, 1, ., 5	0.5365	0.9050	0.9662	yes	no
Q0BHW3	HGD_BURCM	1, ., 1, 3, ., 1, 1, ., 5	0.5460	0.8966	0.9572	yes	no
A9AFM6	HGD_BURM1	1, ., 1, 3, ., 1, 1, ., 5	0.5437	0.8966	0.9572	yes	no
Q7VUG2	HGD_BORPE	1, ., 1, 3, ., 1, 1, ., 5	0.5298	0.8966	0.9837	yes	no
Q9X4G0	HGD_PSEAE	1, ., 1, 3, ., 1, 1, ., 5	0.5448	0.8881	0.9745	yes	no
Q8PDA2	HGD_XANCP	1, ., 1, 3, ., 1, 1, ., 5	0.5191	0.8924	0.9296	yes	no
B1JWJ3	HGD_BURCC	1, ., 1, 3, ., 1, 1, ., 5	0.5460	0.8966	0.9572	yes	no
Q2KYC8	HGD_BORA1	1, ., 1, 3, ., 1, 1, ., 5	0.5342	0.8924	0.9791	yes	no
B1J390	HGD_PSEPW	1, ., 1, 3, ., 1, 1, ., 5	0.5414	0.8776	0.9607	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11.5	0.979
3rd Layer	1.13.11	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027770001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (463 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00010893001	SubName- Full=Chromosome undetermined scaffold_292, whole genome shotgun sequence; (337 aa)	•	•	•		•	0.979
	GSVIVG00035382001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; Flags- Fragme [...] (215 aa)	•	•		•	•	0.975
	GSVIVG00015688001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (196 aa)	•		•	•	•	0.954
	GSVIVG00026346001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (216 aa)	•	•		•	•	0.684
	GSVIVG00018870001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (164 aa)	•		•	•	•	0.666
	GSVIVG00035381001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (243 aa)	•	•		•	•	0.654
	GSVIVG00032422001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (248 aa)	•				•	0.625
	GSVIVG00024504001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (403 aa)			•		•	0.582
	GSVIVG00035063001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)					•	0.516
	GSVIVG00031273001	SubName- Full=Chromosome undetermined scaffold_55, whole genome shotgun sequence; (411 aa)			•			0.485

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		474
PLN02658		435	PLN02658, PLN02658, homogentisate 1,2-dioxygenase	0.0
PRK05341		438	PRK05341, PRK05341, homogentisate 1,2-dioxygenase;	0.0
pfam04209		422	pfam04209, HgmA, homogentisate 1,2-dioxygenase	0.0
TIGR01015		429	TIGR01015, hmgA, homogentisate 1,2-dioxygenase	0.0
COG3508		427	COG3508, HmgA, Homogentisate 1,2-dioxygenase [Seco	1e-168

>gnl\|CDD\|215355 PLN02658, PLN02658, homogentisate 1,2-dioxygenase	Back alignment and domain information

 Score =  876 bits (2266), Expect = 0.0
 Identities = 361/435 (82%), Positives = 390/435 (89%), Gaps = 5/435 (1%)

Query: 26  YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPS 81
           Y+SGFGN FSSEA+ GALPRGQN+PL+CP+GLYAEQ+SGT+FT+PRKLN+R    RIKPS
Sbjct: 1   YQSGFGNHFSSEALPGALPRGQNNPLLCPYGLYAEQLSGTAFTAPRKLNRRSWLYRIKPS 60

Query: 82  ATHEPFKPRVPAHGKLVSEFDKSNS-YTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSS 140
            THEPFKPRVPAH KLV EFD SNS  TTPTQLRW+P  +PDSP DF+DGL+T+CGAGS 
Sbjct: 61  VTHEPFKPRVPAHEKLVGEFDPSNSCETTPTQLRWRPFPVPDSPVDFVDGLFTVCGAGSP 120

Query: 141 FLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQG 200
           FLRHGYAIHMY ANKSMD+CAFCNADGDFL+VPQ+GRLWI TE GKL+VSPGEI V+P+G
Sbjct: 121 FLRHGYAIHMYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTELGKLQVSPGEIVVIPRG 180

Query: 201 FRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTI 260
           FRFAV LPDGPSRGY+ EIFG HFQLPDLGPIGANGLA PRDFL P AWFE+GSR GYTI
Sbjct: 181 FRFAVDLPDGPSRGYVLEIFGGHFQLPDLGPIGANGLANPRDFLHPVAWFEDGSRPGYTI 240

Query: 261 VQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPT 320
           VQKFGGELFTA+QDFSPFNVVAWHGNYVPYKYDLSKFCP NTVL DH DPSINTVLTAPT
Sbjct: 241 VQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLFDHADPSINTVLTAPT 300

Query: 321 DKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLH 380
           DKPGVAL DFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI G YEAKADGFLPGGASLH
Sbjct: 301 DKPGVALADFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGSYEAKADGFLPGGASLH 360

Query: 381 SCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYR 440
           SCMTPHGPDT TYEATIAR     P K+T T+AFMFES LIPR+CPWALESPF D DYY+
Sbjct: 361 SCMTPHGPDTATYEATIARPCADAPSKLTGTLAFMFESSLIPRVCPWALESPFRDRDYYQ 420

Query: 441 CWIGLRSHFSYEEAD 455
           CWIGL+SHFS E+AD
Sbjct: 421 CWIGLKSHFSREDAD 435

Length = 435

>gnl\|CDD\|235421 PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional	Back alignment and domain information

>gnl\|CDD\|217966 pfam04209, HgmA, homogentisate 1,2-dioxygenase	Back alignment and domain information

>gnl\|CDD\|233233 TIGR01015, hmgA, homogentisate 1,2-dioxygenase	Back alignment and domain information

>gnl\|CDD\|226039 COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		474
PRK05341		438	homogentisate 1,2-dioxygenase; Provisional	100.0
PLN02658		435	homogentisate 1,2-dioxygenase	100.0
TIGR01015		429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	100.0
KOG1417		446	consensus Homogentisate 1,2-dioxygenase [Amino aci	100.0
PF04209		424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	100.0
COG3508		427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	100.0
TIGR03037		159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.54
TIGR03404		367	bicupin_oxalic bicupin, oxalate decarboxylase fami	97.44
COG0662		127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	97.37
PF07883		71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	97.29
PRK13264		177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.03
smart00835		146	Cupin_1 Cupin. This family represents the conserve	96.83
PF02311		136	AraC_binding: AraC-like ligand binding domain; Int	96.53
PRK11171		266	hypothetical protein; Provisional	96.38
PF05899		74	Cupin_3: Protein of unknown function (DUF861); Int	96.29
COG1917		131	Uncharacterized conserved protein, contains double	96.28
PF06249		152	EutQ: Ethanolamine utilisation protein EutQ; Inter	96.17
PRK09943		185	DNA-binding transcriptional repressor PuuR; Provis	96.05
PF03079		157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	95.72
COG4766		176	EutQ Ethanolamine utilization protein [Amino acid	95.67
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	95.41
PF00190		144	Cupin_1: Cupin; InterPro: IPR006045 This family re	95.41
TIGR03404		367	bicupin_oxalic bicupin, oxalate decarboxylase fami	95.02
PRK10296		278	DNA-binding transcriptional regulator ChbR; Provis	94.97
PRK15457		233	ethanolamine utilization protein EutQ; Provisional	94.84
PRK04190		191	glucose-6-phosphate isomerase; Provisional	94.27
PF01050		151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	94.24
TIGR01479		468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	93.52
COG3450		116	Predicted enzyme of the cupin superfamily [General	92.89
PRK13290		125	ectC L-ectoine synthase; Reviewed	92.32
PRK11171		266	hypothetical protein; Provisional	91.58
TIGR02297		287	HpaA 4-hydroxyphenylacetate catabolism regulatory	91.19
PLN00212		493	glutelin; Provisional	91.01
PF14525		172	AraC_binding_2: AraC-binding-like domain	90.99
PF12973		91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	90.79
PRK15460		478	cpsB mannose-1-phosphate guanyltransferase; Provis	90.41
PF12852		186	Cupin_6: Cupin	90.18
COG2140		209	Thermophilic glucose-6-phosphate isomerase and rel	89.96
PRK13502		282	transcriptional activator RhaR; Provisional	89.51
PRK00924		276	5-keto-4-deoxyuronate isomerase; Provisional	89.12
PF11699		85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	88.91
PRK10572		290	DNA-binding transcriptional regulator AraC; Provis	88.47
PRK13501		290	transcriptional activator RhaR; Provisional	87.85
PRK13500		312	transcriptional activator RhaR; Provisional	87.59
COG1791		181	Uncharacterized conserved protein, contains double	87.01
PRK10371		302	DNA-binding transcriptional regulator MelR; Provis	86.68
COG3837		161	Uncharacterized conserved protein, contains double	86.57
PRK13503		278	transcriptional activator RhaS; Provisional	86.12
PF06052		151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	84.75
PRK09685		302	DNA-binding transcriptional activator FeaR; Provis	83.26
KOG2107		179	consensus Uncharacterized conserved protein, conta	82.56

>PRK05341 homogentisate 1,2-dioxygenase; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.8e-172  Score=1321.83  Aligned_cols=428  Identities=58%  Similarity=1.060  Sum_probs=409.4

Q ss_pred             CCCCCCCcccccCCCcccccccCCCCCCCCCCCCcCCCccccccccCccccCcccCCcc----ccCCCCccCCCCCCCCC
Q 011934           18 GEDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPSATHEPFKPRVPA   93 (474)
Q Consensus        18 ~~~~~~~~Y~~Gfgn~~~sEa~pGaLP~~qnspq~~~~gLYaEqLsGtaFtapra~n~~----RirPs~~h~~~~~~~~~   93 (474)
                      +...+++.||+||||+|+|||||||||+||||||||+||||||||||||||+||++|+|    ||||||+|++|++++..
T Consensus         6 ~~~~~~~~Y~~Gfgn~~~sEa~pgalP~gqnsPq~~~~gLyaEqlsgtaFtapr~~n~rswlYRirPs~~h~~f~~~~~~   85 (438)
T PRK05341          6 PSAANTLGYQSGFGNEFATEALPGALPVGQNSPQRAPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPSVVHGPFEPVDSR   85 (438)
T ss_pred             cCCCCCcccccccCCcccccccCCCCCCCCCCcccCCcccchhhccCccccCcCccccceeEEeechhhcCCCccccccc
Confidence            34456799999999999999999999999999999999999999999999999999999    99999999999988731


Q ss_pred             CCCccccCCCCCCCCCCCccccCCCCCCCCCCCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEE
Q 011934           94 HGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVP  173 (474)
Q Consensus        94 ~~~~~~~~~~~~~~~~P~~lrW~p~~~p~~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~p  173 (474)
                        .+.. +...  +.+||||||+|+++|++++|||+||+|||||||+++|+|++||+|+||+||.+++|+|+||||||||
T Consensus        86 --~~~~-~~~~--~~~p~q~rW~P~~~p~~~~Dfv~gl~tl~gngD~~~~~G~ai~~y~~n~sM~~~~f~NaDGD~Livp  160 (438)
T PRK05341         86 --LWRT-FDEV--PTPPNQLRWDPLPLPAEPTDFVDGLVTMAGNGDAEAQAGMAIHLYAANRSMQDRYFYNADGELLIVP  160 (438)
T ss_pred             --cccc-cccc--CCCccccccCCCCCCCCCCCchhhhhhhhcCCCcccccccEEEEEeCCCCcccceeecCCCCEEEEE
Confidence              1111 1234  6899999999999998899999999999999999999999999999999998889999999999999


Q ss_pred             EeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCccccccc
Q 011934          174 QKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEG  253 (474)
Q Consensus       174 q~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~  253 (474)
                      |+|+|+|+||||+|+|+|||||||||||+|||++++|++||||||++++||+||||||||+|||||+|||++|+|+|||.
T Consensus       161 q~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g~~f~LPdlGpiG~nglanpRDF~~P~a~~ed~  240 (438)
T PRK05341        161 QQGRLRLATELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYGAPFRLPDLGPIGANGLANPRDFLTPVAAFEDR  240 (438)
T ss_pred             EeCCEEEEEeccceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecCCcccCCCCCcccccCCCChhHcCCCcchhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999885


Q ss_pred             ccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeeee
Q 011934          254 SRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIF  333 (474)
Q Consensus       254 ~~~~~~Vv~K~~G~l~~~~~~hsPfDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~tvltaps~~pG~av~dFviF  333 (474)
                       +++|+|++|++|+||+++|+||||||||||||||||||||+||+|||||++||+||||||||||||++||+|+||||||
T Consensus       241 -~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~dH~dPSI~tvltaps~~pg~a~~dFVIF  319 (438)
T PRK05341        241 -EGPFELVAKFGGRLWRAEIDHSPLDVVAWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTPGTANIDFVIF  319 (438)
T ss_pred             -CCCEEEEEEeCCeeEEEecCCCCceEeeecCcccceEeehhheeeccccccccCCCCceEEEeccCCCCCccccceEEE
Confidence             5789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCceecccee
Q 011934          334 PPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMA  413 (474)
Q Consensus       334 ~PRw~~ae~tfRpPYyHrNv~sE~mgyi~G~y~ar~~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~~~~lA  413 (474)
                      +|||+++|+||||||||||+||||||||+|+|+||++||+|||+||||+|+|||||++++|+|+++  +|+|+|+++|||
T Consensus       320 ~PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y~ak~~gf~pGg~SLH~~~~pHGPd~~a~e~a~~~--~l~p~k~~~~lA  397 (438)
T PRK05341        320 PPRWLVAENTFRPPWFHRNVMSEFMGLIHGVYDAKAEGFVPGGASLHNCMSPHGPDAETFEKASNA--DLKPHKIDNTMA  397 (438)
T ss_pred             CCcccCCCCccCCCCCccchhhhhhhhccccccccccCcCCCeeeecCCCCCCCCCHHHHHHhhcc--ccCCccccceEE
Confidence            999999999999999999999999999999999998899999999999999999999999999999  999999999999


Q ss_pred             EEeeeccCcccchhhhcCCCCChhhhhchhhhhcCCCCCc
Q 011934          414 FMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEE  453 (474)
Q Consensus       414 fMfET~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~~  453 (474)
                      |||||+++|++|+||++++.+|++|++||++|+++|+++.
T Consensus       398 fMfET~~~l~~t~~A~~~~~~d~~Y~~~W~~l~~~f~~~~  437 (438)
T PRK05341        398 FMFETRYPIRPTRFALETPQLQADYDDCWQGLKKHFDPER  437 (438)
T ss_pred             EEEEccccccccHHHHhCccccccHHHHHHhHhhcCCCCC
Confidence            9999999999999999987789999999999999997643

>PLN02658 homogentisate 1,2-dioxygenase	Back alignment and domain information

>TIGR01015 hmgA homogentisate 1,2-dioxygenase	Back alignment and domain information

>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]	Back alignment and domain information

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism	Back alignment and domain information

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	Back alignment and domain information

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family	Back alignment and domain information

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)	Back alignment and domain information

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	Back alignment and domain information

>smart00835 Cupin_1 Cupin	Back alignment and domain information

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC	Back alignment and domain information

>PRK11171 hypothetical protein; Provisional	Back alignment and domain information

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown	Back alignment and domain information

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine	Back alignment and domain information

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional	Back alignment and domain information

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []	Back alignment and domain information

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)	Back alignment and domain information

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family	Back alignment and domain information

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional	Back alignment and domain information

>PRK15457 ethanolamine utilization protein EutQ; Provisional	Back alignment and domain information

>PRK04190 glucose-6-phosphate isomerase; Provisional	Back alignment and domain information

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5	Back alignment and domain information

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	Back alignment and domain information

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]	Back alignment and domain information

>PRK13290 ectC L-ectoine synthase; Reviewed	Back alignment and domain information

>PRK11171 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA	Back alignment and domain information

>PLN00212 glutelin; Provisional	Back alignment and domain information

>PF14525 AraC_binding_2: AraC-binding-like domain	Back alignment and domain information

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A	Back alignment and domain information

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional	Back alignment and domain information

>PF12852 Cupin_6: Cupin	Back alignment and domain information

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]	Back alignment and domain information

>PRK13502 transcriptional activator RhaR; Provisional	Back alignment and domain information

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional	Back alignment and domain information

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B	Back alignment and domain information

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional	Back alignment and domain information

>PRK13501 transcriptional activator RhaR; Provisional	Back alignment and domain information

>PRK13500 transcriptional activator RhaR; Provisional	Back alignment and domain information

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional	Back alignment and domain information

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>PRK13503 transcriptional activator RhaS; Provisional	Back alignment and domain information

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1	Back alignment and domain information

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional	Back alignment and domain information

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		474
1ey2_A		471	Human Homogentisate Dioxygenase With Fe(ii) Length		1e-131

>pdb|1EY2|A Chain A, Human Homogentisate Dioxygenase With Fe(ii) Length = 471

Back alignment and structure

Iteration: 1

Score = 463 bits (1192), Expect = e-131, Method: Compositional matrix adjust. Identities = 241/441 (54%), Positives = 303/441 (68%), Gaps = 19/441 (4%) Query: 22 SDLNYESGFGNSFSSE--AIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR--- 76 ++L Y SGFGN SSE G+LP GQN+P VCP+ LYAEQ+SG++FT PR N+R Sbjct: 28 AELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWL 87 Query: 77 -RIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDS---PTDFIDGLY 132 RI PS +H+PF+ H + +D+ + P QLRWKP +IP + DF+ GL+ Sbjct: 88 YRILPSVSHKPFESIDEGH--VTHNWDEVDP--DPNQLRWKPFEIPKASQKKVDFVSGLH 143 Query: 133 TICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPG 192 T+CGAG +G AIH++ N S +N F N+DGDFL+VPQKG L I TE GK V P Sbjct: 144 TLCGAGDIKSNNGLAIHIFLCNTSXENRCFYNSDGDFLIVPQKGNLLIYTEFGKXLVQPN 203 Query: 193 EIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEE 252 EI V+ +G RF++ + + +RGYI E++G HF+LPDLGPIGANGLA PRDFL+P AW+E+ Sbjct: 204 EICVIQRGXRFSIDVFE-ETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYED 262 Query: 253 GSRLG-YTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPS 311 G YT++ K+ G+LF A+QD SPFNVVAWHGNY PYKY+L F N+V DH DPS Sbjct: 263 RQVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFXVINSVAFDHADPS 322 Query: 312 INTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADG 371 I TVLTA + +PGVA+ DFVIFPPRW VA+ TFRPPYYHRNC SEF GLIRG YEAK G Sbjct: 323 IFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCXSEFXGLIRGHYEAKQGG 382 Query: 372 FLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALE 430 FLPGG SLHS TPHGPD +E A + P +I D T AF FES L + W L+ Sbjct: 383 FLPGGGSLHSTXTPHGPDADCFEK--ASKVKLAPERIADGTXAFXFESSLSLAVTKWGLK 440 Query: 431 -SPFMDHDYYRCWIGLRSHFS 450 S +D +Y++CW L+SHF+ Sbjct: 441 ASRCLDENYHKCWEPLKSHFT 461

PyMOL of 1ey2

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		474
1eyb_A		471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	1e-159
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A Length = 471	Back alignment and structure

 Score =  459 bits (1181), Expect = e-159
 Identities = 250/460 (54%), Positives = 309/460 (67%), Gaps = 21/460 (4%)

Query: 5   SQHQSSSLIRKTDG--EDFSDLNYESGFGNSFSSE--AIDGALPRGQNSPLVCPFGLYAE 60
             H SS  I   D      ++L Y SGFGN  SSE     G+LP GQN+P VCP+ LYAE
Sbjct: 9   HHHHSSGHIDDDDKHMGSMAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAE 68

Query: 61  QISGTSFTSPRKLNQR----RIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWK 116
           Q+SG++FT PR  N+R    RI PS +H+PF+     H       +       P QLRWK
Sbjct: 69  QLSGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDEGH----VTHNWDEVDPDPNQLRWK 124

Query: 117 PVDIP---DSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVP 173
           P +IP       DF+ GL+T+CGAG     +G AIH++  N SM+N  F N+DGDFL+VP
Sbjct: 125 PFEIPKASQKKVDFVSGLHTLCGAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVP 184

Query: 174 QKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIG 233
           QKG L I TE GK+ V P EI V+ +G RF++ + +  +RGYI E++G HF+LPDLGPIG
Sbjct: 185 QKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFE-ETRGYILEVYGVHFELPDLGPIG 243

Query: 234 ANGLAAPRDFLVPTAWFEEGSRLG-YTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKY 292
           ANGLA PRDFL+P AW+E+    G YT++ K+ G+LF A+QD SPFNVVAWHGNY PYKY
Sbjct: 244 ANGLANPRDFLIPIAWYEDRQVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKY 303

Query: 293 DLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRN 352
           +L  F   N+V  DH DPSI TVLTA + +PGVA+ DFVIFPPRW VA+ TFRPPYYHRN
Sbjct: 304 NLKNFMVINSVAFDHADPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRN 363

Query: 353 CMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKI-TDT 411
           CMSEFMGLIRG YEAK  GFLPGG SLHS MTPHGPD   +E   A   +  P +I   T
Sbjct: 364 CMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPDADCFEK--ASKVKLAPERIADGT 421

Query: 412 MAFMFESCLIPRICPWALE-SPFMDHDYYRCWIGLRSHFS 450
           MAFMFES L   +  W L+ S  +D +Y++CW  L+SHF+
Sbjct: 422 MAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFT 461

PyMOL of 1eyb

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		474
1eyb_A		471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	100.0
3d0j_A		140	Uncharacterized protein CA_C3497; beta-barrel, str	97.79
3myx_A		238	Uncharacterized protein pspto_0244; protein of unk	97.76
3ibm_A		167	Cupin 2, conserved barrel domain protein; cupin 2	97.69
3lwc_A		119	Uncharacterized protein; structural genomics, unkn	97.55
1v70_A		105	Probable antibiotics synthesis protein; structural	97.47
3d82_A		102	Cupin 2, conserved barrel domain protein; structur	97.37
2opk_A		112	Hypothetical protein; putative mannose-6-phosphate	97.33
2gu9_A		113	Tetracenomycin polyketide synthesis protein; X-RAY	97.33
3l2h_A		162	Putative sugar phosphate isomerase; AFE_0303, stru	97.32
2i45_A		107	Hypothetical protein; neisseria meningitidis cupin	97.25
1fi2_A		201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	97.22
3bcw_A		123	Uncharacterized protein; structural genomics, join	97.22
1yfu_A		174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.2
4e2g_A		126	Cupin 2 conserved barrel domain protein; MCSG, PSI	97.16
1yhf_A		115	Hypothetical protein SPY1581; structural genomics,	97.13
4h7l_A		157	Uncharacterized protein; structural genomics, PSI-	97.09
2b8m_A		117	Hypothetical protein MJ0764; structural genomics,	97.06
4axo_A		151	EUTQ, ethanolamine utilization protein; structural	97.05
2oa2_A		148	BH2720 protein; 10175341, structural genomics, joi	97.04
2o8q_A		134	Hypothetical protein; cpuin-like fold, structural	96.98
4i4a_A		128	Similar to unknown protein; structural genomics, P	96.97
1o5u_A		101	Novel thermotoga maritima enzyme TM1112; cupin, st	96.93
3es4_A		116	Uncharacterized protein DUF861 with A RMLC-like C;	96.87
2fqp_A		97	Hypothetical protein BP2299; double-stranded beta-	96.83
1vj2_A		126	Novel manganese-containing cupin TM1459; structura	96.83
3jzv_A		166	Uncharacterized protein RRU_A2000; structural geno	96.81
3i7d_A		163	Sugar phosphate isomerase; YP_168127.1, structural	96.79
2pfw_A		116	Cupin 2, conserved barrel domain protein; cupin do	96.79
2pyt_A		133	Ethanolamine utilization protein EUTQ; structural	96.73
3fjs_A		114	Uncharacterized protein with RMLC-like cupin fold;	96.69
2q30_A		110	Uncharacterized protein; double-stranded beta-heli	96.67
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	96.67
3cew_A		125	Uncharacterized cupin protein; all beta-protein, j	96.65
3kgz_A		156	Cupin 2 conserved barrel domain protein; metallopr	96.63
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	96.62
1lr5_A		163	Auxin binding protein 1; beta jellyroll, double st	96.56
2bnm_A		198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	96.56
1zvf_A		176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	96.55
2ozj_A		114	Cupin 2, conserved barrel; cupin superfamily prote	96.53
3myx_A		238	Uncharacterized protein pspto_0244; protein of unk	96.51
1dgw_A		178	Canavalin; duplicated swiss-roll beta barrels, loo	96.48
2vpv_A		166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	96.44
2qnk_A		286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	96.39
3h8u_A		125	Uncharacterized conserved protein with double-STR	96.36
1y3t_A		337	Hypothetical protein YXAG; BI cupin, dioxygenase,	96.26
2vqa_A		361	SLL1358 protein, MNCA; periplasmic binding protein	96.24
2xlg_A		239	SLL1785 protein, CUCA; metal binding protein, cupi	96.21
1vr3_A		191	Acireductone dioxygenase; 13543033, structural gen	96.21
1y3t_A		337	Hypothetical protein YXAG; BI cupin, dioxygenase,	96.07
2f4p_A		147	Hypothetical protein TM1010; double-stranded beta-	96.03
1o4t_A		133	Putative oxalate decarboxylase; double-stranded be	95.99
3rns_A		227	Cupin 2 conserved barrel domain protein; structura	95.97
4b29_A		217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	95.94
1rc6_A		261	Hypothetical protein YLBA; structural genomics, NY	95.86
3rns_A		227	Cupin 2 conserved barrel domain protein; structura	95.62
1x82_A		190	Glucose-6-phosphate isomerase; cupin superfamily,	95.62
2ozi_A		98	Hypothetical protein RPA4178; APC6210, putative pr	95.59
2arc_A		164	ARAC, arabinose operon regulatory protein; transcr	95.57
3es1_A		172	Cupin 2, conserved barrel domain protein; YP_00116	95.3
2vqa_A		361	SLL1358 protein, MNCA; periplasmic binding protein	95.26
1sq4_A		278	GLXB, glyoxylate-induced protein; structural genom	95.14
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	95.12
3gbg_A		276	TCP pilus virulence regulatory protein; cupin, hel	95.1
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	95.01
1sef_A		274	Conserved hypothetical protein; structural genomic	94.96
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	94.73
1y9q_A		192	Transcriptional regulator, HTH_3 family; transcrip	94.63
1j58_A		385	YVRK protein; cupin, decarboxyklase, oxalate, mang	94.54
1uij_A		416	Beta subunit of beta conglycinin; double-stranded	94.46
1j58_A		385	YVRK protein; cupin, decarboxyklase, oxalate, mang	94.43
1zrr_A		179	E-2/E-2' protein; nickel, cupin, beta helix, methi	94.31
3ebr_A		159	Uncharacterized RMLC-like cupin; structural genomi	94.22
2d5f_A		493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	94.16
1rc6_A		261	Hypothetical protein YLBA; structural genomics, NY	93.92
2d40_A		354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	93.9
3bu7_A		394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	93.85
1sfn_A		246	Conserved hypothetical protein; structural genomic	93.76
1fxz_A		476	Glycinin G1; proglycinin, legumin, SEED storage pr	93.71
2ea7_A		434	7S globulin-1; beta barrel, cupin superfamily, pla	93.7
1sef_A		274	Conserved hypothetical protein; structural genomic	93.3
1uij_A		416	Beta subunit of beta conglycinin; double-stranded	93.14
2o1q_A		145	Putative acetyl/propionyl-COA carboxylase, alpha;	93.12
3ksc_A		496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	93.09
3c3v_A		510	Arachin ARAH3 isoform; peanut allergen, allergy, g	92.99
3qac_A		465	11S globulin SEED storage protein; 11S SEED storag	92.71
3lag_A		98	Uncharacterized protein RPA4178; functionally unkn	92.6
2ea7_A		434	7S globulin-1; beta barrel, cupin superfamily, pla	92.48
2cav_A		445	Protein (canavalin); vicilin, 7S SEED protein, dom	92.1
1fxz_A		476	Glycinin G1; proglycinin, legumin, SEED storage pr	92.1
3s7i_A		418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	92.07
2phl_A		397	Phaseolin; plant SEED storage protein(vicilin); HE	91.96
4e2q_A		266	Ureidoglycine aminohydrolase; BI-cupin, manganese	91.88
2e9q_A		459	11S globulin subunit beta; cucubitin, pumpkin SEED	91.68
3nw4_A		368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	91.66
3ksc_A		496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	91.48
3fz3_A		531	Prunin; TREE NUT allergen, allergy, amandin, almon	91.45
3cjx_A		165	Protein of unknown function with A cupin-like FOL;	91.27
2d5f_A		493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	91.23
3c3v_A		510	Arachin ARAH3 isoform; peanut allergen, allergy, g	91.02
2e9q_A		459	11S globulin subunit beta; cucubitin, pumpkin SEED	90.55
2d40_A		354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	90.47
3kgl_A		466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	90.44
3o14_A		223	Anti-ecfsigma factor, CHRR; cupin, structural geno	89.93
3qac_A		465	11S globulin SEED storage protein; 11S SEED storag	89.86
2phl_A		397	Phaseolin; plant SEED storage protein(vicilin); HE	89.21
1sfn_A		246	Conserved hypothetical protein; structural genomic	88.98
3bu7_A		394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	88.9
3nw4_A		368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	88.76
2q1z_B		195	Anti-sigma factor CHRR, transcriptional activator;	88.06
3s7i_A		418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	87.6
2qnk_A		286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	87.26
2cav_A		445	Protein (canavalin); vicilin, 7S SEED protein, dom	83.87

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A	Back alignment and structure

Probab=100.00  E-value=8.9e-169  Score=1306.43  Aligned_cols=441  Identities=56%  Similarity=1.049  Sum_probs=384.7

Q ss_pred             ccccccccccC--CCCCCCCcccccCCCcccccc--cCCCCCCCCCCCCcCCCccccccccCccccCcccCCcc----cc
Q 011934            7 HQSSSLIRKTD--GEDFSDLNYESGFGNSFSSEA--IDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RI   78 (474)
Q Consensus         7 ~~~~~~~~~~~--~~~~~~~~Y~~Gfgn~~~sEa--~pGaLP~~qnspq~~~~gLYaEqLsGtaFtapra~n~~----Ri   78 (474)
                      |.||--|-+.+  --.+++|+||+||||+|+|||  +|||||+||||||+|+|||||||||||+||+||++|+|    ||
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~y~~Gfgn~~~sEavr~pgalP~gqnsPq~~~~gLYaEqLsGtaFtapr~~n~rSwLYri   90 (471)
T 1eyb_A           11 HHSSGHIDDDDKHMGSMAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYRI   90 (471)
T ss_dssp             -----------------CCCCEEECTTCCEEEECTTSTTCSCSSCSCCSSCGGGCEEEEEESSCTTSCGGGCCEEEEEES
T ss_pred             ccccCCcCccccccCCCcchhhhhhhcccChhhHhhCCCCCcccccCcccCCCccchhhhcCCcccCccccccceeeecc
Confidence            45666665544  225778999999999999999  99999999999999999999999999999999999998    99


Q ss_pred             CCCCccCCCCCCCCCCCCccccCCCCCCCCCCCccccCCCCCCCC---CCCcccceeeeeccCCcccccccEEEEEEeCC
Q 011934           79 KPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDS---PTDFIDGLYTICGAGSSFLRHGYAIHMYTANK  155 (474)
Q Consensus        79 rPs~~h~~~~~~~~~~~~~~~~~~~~~~~~~P~~lrW~p~~~p~~---~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~  155 (474)
                      |||++|++|+++..  ......+...  ...|+||||+|+++|.+   ++|||+||+|||||||+++|+|++||+|+||+
T Consensus        91 rPs~~h~~~~~~~~--~~~~~~~~~~--~~~p~qLrw~p~~ip~~~~~~~Dfv~Gl~tl~gngD~~~~~G~aI~~y~~n~  166 (471)
T 1eyb_A           91 LPSVSHKPFESIDE--GHVTHNWDEV--DPDPNQLRWKPFEIPKASQKKVDFVSGLHTLCGAGDIKSNNGLAIHIFLCNT  166 (471)
T ss_dssp             SCTTCSCCCEECCC--TBCCCCGGGS--CCCCSCEEECSCCCCCTTTCCCCTTTTEEEEEEESCGGGTCCEEEEEEEECS
T ss_pred             CCcccccccccccc--cccCCccccc--CCCccccccCCCCCCccccCCCCcccchhheeccCCcccccceEEEEEeCCC
Confidence            99999999988762  1111222112  24599999999999853   78999999999999999999999999999999


Q ss_pred             CCCccceecCCCCEEEEEEeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCC
Q 011934          156 SMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGAN  235 (474)
Q Consensus       156 sM~~~~f~NaDGDeLi~pq~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~n  235 (474)
                      ||.+++|||||||||||||+|+|+|+||||+|+|+|||||||||||+|||++++ ++||||||++++||+||||||||+|
T Consensus       167 sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRGi~frv~l~~-p~Rgyi~E~~g~~f~LP~lGpiGan  245 (471)
T 1eyb_A          167 SMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFE-ETRGYILEVYGVHFELPDLGPIGAN  245 (471)
T ss_dssp             CCCSEEEEESSEEEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEECSS-SEEEEEEEEESCCEECCCCGGGTTS
T ss_pred             CcccceeecCCCCEEEEEEeCCEEEEEecccEEeccCCEEEECCccEEEEeeCC-CceEEEEEccCCccccccccccccC
Confidence            998889999999999999999999999999999999999999999999999987 9999999999999999999999999


Q ss_pred             CCCCCCCccCCccccccccccc--EEEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcc
Q 011934          236 GLAAPRDFLVPTAWFEEGSRLG--YTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSIN  313 (474)
Q Consensus       236 glan~RDf~~P~a~~e~~~~~~--~~Vv~K~~G~l~~~~~~hsPfDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~  313 (474)
                      ||||+|||++|+|+|+++ +++  |+|++|++|+||+++|+||||||||||||||||||||+||+|||||++||+|||||
T Consensus       246 glan~RDF~~PvA~~ed~-~~~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~PYkydl~~F~pI~svs~dH~dPSIf  324 (471)
T 1eyb_A          246 GLANPRDFLIPIAWYEDR-QVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPSIF  324 (471)
T ss_dssp             CBSCGGGEEEECCCCCCC-EEEEEEEEEEEETTEEEEEEEEECSCCEEEEEESCCCEEEEGGGCBCCCCSSSSCCCGGGG
T ss_pred             CccChhhccCcccccccc-CCCccEEEEEEeCCeeEEEecCCCCceEEeEcCcccCeEechHHcccccccccccCCCCcc
Confidence            999999999999999986 567  99999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCCCCceEEEeeeeCCccccCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHH
Q 011934          314 TVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTY  393 (474)
Q Consensus       314 tvltaps~~pG~av~dFviF~PRw~~ae~tfRpPYyHrNv~sE~mgyi~G~y~ar~~g~~pG~~SLHp~g~pHGP~~~~~  393 (474)
                      |||||||++|||||||||||||||+++|+||||||||||+||||||||+|+|+||++||+|||+||||+|+|||||+++|
T Consensus       325 tVltaps~~pg~av~dFViFpPRw~v~e~TfrpPyyHrNv~SEfmgli~G~y~ak~~Gf~pGg~SLH~~~~pHGPd~~~~  404 (471)
T 1eyb_A          325 TVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPDADCF  404 (471)
T ss_dssp             EEEEEECSSTTCEEEEEEEECSEEECCSSSCCSCCCBCCSCEEEEEECCC--------CCTTCEEEECTTCCBCCCHHHH
T ss_pred             eEEEccCCCCCceEEeEeecCCccCCCCCccCCCCCccchhhhhhhhccccccccccCcCCCceeccCCCcCCCCChhhh
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             HHHHhcCCCCCCceecc-ceeEEeeeccCcccchhhhcCC-CCChhhhhchhhhhcCCCCCccC
Q 011934          394 EATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALESP-FMDHDYYRCWIGLRSHFSYEEAD  455 (474)
Q Consensus       394 e~a~~~~~~l~P~~~~~-~lAfMfET~~~l~~T~~A~~~~-~~d~~Y~~~W~~l~~~f~~~~~~  455 (474)
                      |+|+++  +|+|+|+++ ||||||||++||++|+||++++ .+|++|++||++|+++|+++.+.
T Consensus       405 E~a~~~--~l~p~k~~d~~lAfMfET~~pl~~T~~Al~~~~~~d~~Y~~~W~~l~~~f~~~~~~  466 (471)
T 1eyb_A          405 EKASKV--KLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNSRN  466 (471)
T ss_dssp             HHHHHS--CCCCEEESTTCCEEEEEESSCCEECHHHHHHCC------------CCCCCCTTCCC
T ss_pred             HHhhcc--ccCceecCCceEEEEEEccccccccHHHHhCccccCccHHHhhhhhhccCCCCCcc
Confidence            999999  999999976 9999999999999999999975 68999999999999999975543

PyMOL of 1eyb

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}	Back alignment and structure

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}	Back alignment and structure

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}	Back alignment and structure

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A	Back alignment and structure

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}	Back alignment and structure

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}	Back alignment and structure

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A	Back alignment and structure

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}	Back alignment and structure

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}	Back alignment and structure

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A	Back alignment and structure

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}	Back alignment and structure

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*	Back alignment and structure

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}	Back alignment and structure

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9	Back alignment and structure

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}	Back alignment and structure

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18	Back alignment and structure

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}	Back alignment and structure

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}	Back alignment and structure

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}	Back alignment and structure

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}	Back alignment and structure

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A	Back alignment and structure

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}	Back alignment and structure

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}	Back alignment and structure

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10	Back alignment and structure

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}	Back alignment and structure

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}	Back alignment and structure

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}	Back alignment and structure

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24	Back alignment and structure

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}	Back alignment and structure

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A	Back alignment and structure

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}	Back alignment and structure

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*	Back alignment and structure

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A	Back alignment and structure

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20	Back alignment and structure

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}	Back alignment and structure

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}	Back alignment and structure

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A	Back alignment and structure

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}	Back alignment and structure

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A	Back alignment and structure

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*	Back alignment and structure

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}	Back alignment and structure

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A	Back alignment and structure

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6	Back alignment and structure

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*	Back alignment and structure

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9	Back alignment and structure

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9	Back alignment and structure

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}	Back alignment and structure

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}	Back alignment and structure

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11	Back alignment and structure

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}	Back alignment and structure

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*	Back alignment and structure

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A	Back alignment and structure

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}	Back alignment and structure

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}	Back alignment and structure

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15	Back alignment and structure

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A	Back alignment and structure

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*	Back alignment and structure

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A	Back alignment and structure

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A	Back alignment and structure

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}	Back alignment and structure

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11	Back alignment and structure

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23	Back alignment and structure

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23	Back alignment and structure

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11	Back alignment and structure

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A	Back alignment and structure

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A	Back alignment and structure

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11	Back alignment and structure

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*	Back alignment and structure

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21	Back alignment and structure

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}	Back alignment and structure

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}	Back alignment and structure

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}	Back alignment and structure

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}	Back alignment and structure

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A	Back alignment and structure

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B	Back alignment and structure

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A	Back alignment and structure

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A	Back alignment and structure

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*	Back alignment and structure

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A	Back alignment and structure

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A	Back alignment and structure

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A	Back alignment and structure

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}	Back alignment and structure

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A	Back alignment and structure

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}	Back alignment and structure

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A	Back alignment and structure

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}	Back alignment and structure

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A	Back alignment and structure

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23	Back alignment and structure

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}	Back alignment and structure

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}	Back alignment and structure

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}	Back alignment and structure

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*	Back alignment and structure

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11	Back alignment and structure

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23	Back alignment and structure

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A	Back alignment and structure

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A	Back alignment and structure

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A	Back alignment and structure

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		474
d1eyba_		439	b.82.1.4 (A:) Homogentisate dioxygenase {Human (Ho	0.0

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]} Length = 439	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  551 bits (1422), Expect = 0.0
 Identities = 246/441 (55%), Positives = 308/441 (69%), Gaps = 19/441 (4%)

Query: 22  SDLNYESGFGNSFSSE--AIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR--- 76
           ++L Y SGFGN  SSE     G+LP GQN+P VCP+ LYAEQ+SG++FT PR  N+R   
Sbjct: 1   AELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWL 60

Query: 77  -RIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIP---DSPTDFIDGLY 132
            RI PS +H+PF+     H  +   +D+ +    P QLRWKP +IP       DF+ GL+
Sbjct: 61  YRILPSVSHKPFESIDEGH--VTHNWDEVD--PDPNQLRWKPFEIPKASQKKVDFVSGLH 116

Query: 133 TICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPG 192
           T+CGAG     +G AIH++  N SM+N  F N+DGDFL+VPQKG L I TE GK+ V P 
Sbjct: 117 TLCGAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPN 176

Query: 193 EIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEE 252
           EI V+ +G RF++ + +  +RGYI E++G HF+LPDLGPIGANGLA PRDFL+P AW+E+
Sbjct: 177 EICVIQRGMRFSIDVFE-ETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYED 235

Query: 253 GSRLG-YTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPS 311
               G YT++ K+ G+LF A+QD SPFNVVAWHGNY PYKY+L  F   N+V  DH DPS
Sbjct: 236 RQVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPS 295

Query: 312 INTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADG 371
           I TVLTA + +PGVA+ DFVIFPPRW VA+ TFRPPYYHRNCMSEFMGLIRG YEAK  G
Sbjct: 296 IFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGG 355

Query: 372 FLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKI-TDTMAFMFESCLIPRICPWALE 430
           FLPGG SLHS MTPHGPD   +E   A   +  P +I   TMAFMFES L   +  W L+
Sbjct: 356 FLPGGGSLHSTMTPHGPDADCFEK--ASKVKLAPERIADGTMAFMFESSLSLAVTKWGLK 413

Query: 431 -SPFMDHDYYRCWIGLRSHFS 450
            S  +D +Y++CW  L+SHF+
Sbjct: 414 ASRCLDENYHKCWEPLKSHFT 434

PyMOL of d1eyba_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		474
d1eyba_		439	Homogentisate dioxygenase {Human (Homo sapiens) [T	100.0
d1y3ta1		330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.31
d1juha_		348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	97.42
d1v70a_		105	Hypothetical protein TTHA0104 {Thermus thermophilu	97.22
d1yhfa1		112	Hypothetical protein SPy1581 {Streptococcus pyogen	97.21
d2b8ma1		108	Hypothetical protein MJ0764 {Archaeon Methanococcu	97.04
d2pyta1		128	Ethanolamine utilization protein EutQ {Salmonella	97.02
d1uika1		203	Seed storage 7S protein {Soybean (Glycine max), be	96.99
d1y3ta1		330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	96.98
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	96.87
g1dgw.1		168	Seed storage 7S protein {Jack bean (Canavalia ensi	96.74
d1juha_		348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	96.69
d1o4ta_		115	Hypothetical protein TM1287 {Thermotoga maritima [	96.58
d1o5ua_		88	Hypothetical protein TM1112 {Thermotoga maritima [	96.54
d1vj2a_		114	Hypothetical protein TM1459 {Thermotoga maritima [	96.53
d1j58a_		372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	96.48
d2et1a1		201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	96.46
d1od5a2		173	Seed storage 7S protein {Soybean (Glycine max), gl	96.44
d1fxza2		174	Seed storage 7S protein {Soybean (Glycine max), pr	96.4
d1uija1		170	Seed storage 7S protein {Soybean (Glycine max), be	96.2
d1j58a_		372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	96.17
d2phla2		162	Seed storage 7S protein {French bean (Phaseolus vu	96.0
d1lr5a_		160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	95.99
d1dgwa_		178	Seed storage 7S protein {Jack bean (Canavalia ensi	95.96
d2f4pa1		134	Hypothetical protein TM1010 {Thermotoga maritima [	95.83
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	95.79
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	95.76
d1x82a_		190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	95.54
d1uika2		185	Seed storage 7S protein {Soybean (Glycine max), be	95.54
d2phla1		200	Seed storage 7S protein {French bean (Phaseolus vu	95.39
d1y9qa2		99	Probable transcriptional regulator VC1968, C-termi	95.32
d1zrra1		179	Acireductone dioxygenase {Klebsiella pneumoniae [T	95.31
d2bnma2		122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	95.23
d1vr3a1		179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	95.15
d1sq4a_		273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	95.13
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	95.1
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	95.08
d2d40a1		308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	94.61
d2arca_		161	Regulatory protein AraC {Escherichia coli [TaxId:	94.49
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	94.43
d1fxza1		239	Seed storage 7S protein {Soybean (Glycine max), pr	93.7
d1sq4a_		273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	93.53
d2d40a1		308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	92.48
d2phda1		351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	92.18
d1od5a1		245	Seed storage 7S protein {Soybean (Glycine max), gl	90.79
d1yfua1		174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	90.72
d1zvfa1		175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	87.58
d3bu7a1		355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	85.75
d2phda1		351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	82.26

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-168  Score=1296.58  Aligned_cols=425  Identities=58%  Similarity=1.064  Sum_probs=387.7

Q ss_pred             CCcccccCCCccccc--ccCCCCCCCCCCCCcCCCccccccccCccccCcccCCcc----ccCCCCccCCCCCCCCCCCC
Q 011934           23 DLNYESGFGNSFSSE--AIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQR----RIKPSATHEPFKPRVPAHGK   96 (474)
Q Consensus        23 ~~~Y~~Gfgn~~~sE--a~pGaLP~~qnspq~~~~gLYaEqLsGtaFtapra~n~~----RirPs~~h~~~~~~~~~~~~   96 (474)
                      +++||+||||+|+||  |||||||+||||||||+|||||||||||+||+||++|+|    ||||||+|.+|++++.  ..
T Consensus         2 ~l~Y~~Gfgn~f~se~~a~pgalP~gqnsPq~~~~GLYaEqlsGtaFtapr~~n~rswlYRirPsv~h~~~~~~~~--~~   79 (439)
T d1eyba_           2 ELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDE--GH   79 (439)
T ss_dssp             CCCEEECTTCCEEEECTTSTTCSCSSCSCCSSCGGGCEEEEEESSCTTSCGGGCCEEEEEESSCTTCSCCCEECCC--TB
T ss_pred             CccccCCCCCccccccccCCCCCCCCCCCCCcCCCCcchhhccCCccCCCCccCceeeecccCccccCCCCcccCc--cc
Confidence            589999999999999  999999999999999999999999999999999999999    9999999999999874  23


Q ss_pred             ccccCCCCCCCCCCCccccCCCCCCC---CCCCcccceeeeeccCCcccccccEEEEEEeCCCCCccceecCCCCEEEEE
Q 011934           97 LVSEFDKSNSYTTPTQLRWKPVDIPD---SPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVP  173 (474)
Q Consensus        97 ~~~~~~~~~~~~~P~~lrW~p~~~p~---~~~Dfv~gl~tl~g~gD~~~~~G~ai~~y~~~~sM~~~~f~NaDGDeLi~p  173 (474)
                      ....+.+.  +++||||||+|+++|+   +++|||+||+|||||||+++|+|+|||+|.||+||++++|+||||||||||
T Consensus        80 ~~~~~~~~--~~~p~qlRW~P~~~p~~~~~~~dfv~Gl~t~~g~Gd~~~~~G~aihiy~~n~sM~~~~f~NADGDeLi~~  157 (439)
T d1eyba_          80 VTHNWDEV--DPDPNQLRWKPFEIPKASQKKVDFVSGLHTLCGAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVP  157 (439)
T ss_dssp             CCCCGGGS--CCCCSCEEECSCCCCCTTTCCCCTTTTEEEEEEESCGGGTCCEEEEEEEECSCCCSEEEEESSEEEEEEE
T ss_pred             cCCChhhc--CCCccccccCCCCCCccccCCcchhhceeeecccCCcccccCcEEEEEecCCCCccceeEcCCCCEEEEE
Confidence            33334455  7899999999999993   578999999999999999999999999999999998889999999999999


Q ss_pred             EeCcEEEEeeceeeeecCCcEEEEcceeEEEEECCCCCeeEEEEEEcCCeeeeCCCCCCCCCCCCCCCCccCCccccccc
Q 011934          174 QKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEG  253 (474)
Q Consensus       174 q~G~l~l~TEfG~L~v~pGd~vVIPRGi~frv~l~~g~~rgyi~E~~~~~~~LPelGpiG~nglan~RDf~~P~a~~e~~  253 (474)
                      |+|+|+|+||||+|+|+|||||||||||+|||++ ++++|+||||+++.||+|||+||||+|||||||||++|+|+|+++
T Consensus       158 ~~Gsg~l~TefG~L~v~pGDyvVIPRG~~frv~~-~~~~r~yiiE~~g~~~~lPe~Gpig~~~l~~pRDf~~P~a~~ed~  236 (439)
T d1eyba_         158 QKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDV-FEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDR  236 (439)
T ss_dssp             EESCEEEEETTEEEEECTTEEEEECTTCCEEEEC-SSSEEEEEEEEESCCEECCCCGGGTTSCBSCGGGEEEECCCCCCC
T ss_pred             EeCcEEEEEeeeEEEecCCcEEEecCceEEEEec-CCCceEEEEeecCceeecCcccccccccccChHHhcccccccccc
Confidence            9999999999999999999999999999999999 559999999999999999999999999999999999999999986


Q ss_pred             c-cccEEEEEEECCceEEEEcCCCCCeEeeecCCccceeeccCCcccccccccccCCCCcceEEeecCCCCCceEEEeee
Q 011934          254 S-RLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVI  332 (474)
Q Consensus       254 ~-~~~~~Vv~K~~G~l~~~~~~hsPfDVVgWhGn~~Pykydl~~F~pi~sv~~dH~dPSi~tvltaps~~pG~av~dFvi  332 (474)
                      + .++|+|++|++|+|++++|+||||||||||||||||||||+||+||||+++||+||||||||||||+++|+|||||||
T Consensus       237 ~~~~~~~v~~K~~g~l~~~~~~hsPfDVVgWhG~~~Pykynl~dF~pI~sv~~dH~pPsihtvfta~s~~~G~~v~dFvi  316 (439)
T d1eyba_         237 QVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPSIFTVLTAKSVRPGVAIADFVI  316 (439)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEECSCCEEEEEESCCCEEEEGGGCBCCCCSSSSCCCGGGGEEEEEECSSTTCEEEEEEE
T ss_pred             cCCCcEEEEEEECCEEEEEEecCCCceEEeecCcceeEEEehHhceeccccccccCCCcceeEEecCCCCCCceeEEEEE
Confidence            3 367999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCccccCCCCCCCCCCCCCcccccceeeecccccccCCcCCCeeeeecCCCCCCCChHHHHHHHhcCCCCCCcee-ccc
Q 011934          333 FPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKI-TDT  411 (474)
Q Consensus       333 F~PRw~~ae~tfRpPYyHrNv~sE~mgyi~G~y~ar~~g~~pG~~SLHp~g~pHGP~~~~~e~a~~~~~~l~P~~~-~~~  411 (474)
                      |||||+++|+||||||||||+||||||||+|+|++|++||+|||+||||+|+|||||++++|+|+++  +++|+|+ ++|
T Consensus       317 fPprw~~~~~tfrpPyyHrNv~sE~m~~i~G~y~ar~~gf~pGg~SlHp~g~pHGP~p~~~e~a~~~--~~~p~k~~~~~  394 (439)
T d1eyba_         317 FPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPDADCFEKASKV--KLAPERIADGT  394 (439)
T ss_dssp             ECSEEECCSSSCCSCCCBCCSCEEEEEECCC--------CCTTCEEEECTTCCBCCCHHHHHHHHHS--CCCCEEESTTC
T ss_pred             eCCcccccCCcccCCcccccccceeeeEeecCcccccCCccCCeEEecCCCCCCCCChHHHHHHhcC--ccCCcccCCcc
Confidence            9999999999999999999999999999999999998999999999999999999999999999999  9999999 899


Q ss_pred             eeEEeeeccCcccchhhhc-CCCCChhhhhchhhhhcCCCCCcc
Q 011934          412 MAFMFESCLIPRICPWALE-SPFMDHDYYRCWIGLRSHFSYEEA  454 (474)
Q Consensus       412 lAfMfET~~~l~~T~~A~~-~~~~d~~Y~~~W~~l~~~f~~~~~  454 (474)
                      |||||||++||++|+||++ +..+|++|++||++|+++|+++++
T Consensus       395 lAfM~eT~~pl~vt~~A~~~~~~~d~~Y~~sW~~l~~~F~p~~~  438 (439)
T d1eyba_         395 MAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNSR  438 (439)
T ss_dssp             CEEEEEESSCCEECHHHHHHCC------------CCCCCCTTCC
T ss_pred             EEEEEeCCCccccCHHHhhcccccCccHHHHHhhHhccCCcccC
Confidence            9999999999999999998 556899999999999999999876

PyMOL of d1eyba_

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}	Back information, alignment and structure

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}	Back information, alignment and structure

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}	Back information, alignment and structure

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	Back information, alignment and structure

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}	Back information, alignment and structure

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}	Back information, alignment and structure

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}	Back information, alignment and structure

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}	Back information, alignment and structure

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}	Back information, alignment and structure

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}	Back information, alignment and structure

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}	Back information, alignment and structure

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}	Back information, alignment and structure

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}	Back information, alignment and structure

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}	Back information, alignment and structure

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}	Back information, alignment and structure

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}	Back information, alignment and structure

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}	Back information, alignment and structure

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}	Back information, alignment and structure