Citrus Sinensis ID: 011956
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 474 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ECP7 | 470 | Sugar transporter ERD6-li | yes | no | 0.940 | 0.948 | 0.733 | 0.0 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.919 | 0.941 | 0.598 | 1e-157 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.943 | 0.927 | 0.582 | 1e-151 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.940 | 0.948 | 0.553 | 1e-138 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.968 | 0.960 | 0.505 | 1e-135 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.928 | 0.936 | 0.543 | 1e-134 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.976 | 0.933 | 0.490 | 1e-133 | |
| Q94CI7 | 474 | Sugar transporter ERD6-li | no | no | 0.970 | 0.970 | 0.506 | 1e-131 | |
| Q94AF9 | 467 | Sugar transporter ERD6-li | no | no | 0.976 | 0.991 | 0.481 | 1e-131 | |
| Q93Z80 | 458 | Sugar transporter ERD6-li | no | no | 0.943 | 0.975 | 0.496 | 1e-129 |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/446 (73%), Positives = 377/446 (84%)
Query: 25 ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
E+ SA+ T+ ++L+TFVAV GS+VFGSAIGYSSP QS +T +L LSVAEYSLFGSILT
Sbjct: 20 ENQDSSATITTTLLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILT 79
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
IGAMIGA MSG+IAD IGRR TMGFS++ CI+GW+ I SK A WLD+GR LVGYGMG+
Sbjct: 80 IGAMIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVF 139
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLI 204
S+VVPVYIAEITPK LRGGFTTVHQL+IC+GVS+TYL+G+F+ WRILALIG IPC+VQ++
Sbjct: 140 SFVVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMM 199
Query: 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264
GL IPESPRWLAK GK E E ALQRLRG ADIS E+ EI++YT L LSEG I++L
Sbjct: 200 GLFVIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDL 259
Query: 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLG 324
FQ +YA SL+VGVGLMVLQQFGGVNGIAFYASSIF SAG S IGMIAMVV+QIPMT LG
Sbjct: 260 FQPQYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLG 319
Query: 325 VLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSL 384
VLLMDKSGRRPLLL+SA GTC+GC L LSF Q ++Q +LAL GVLVYTGSFSL
Sbjct: 320 VLLMDKSGRRPLLLISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTGVLVYTGSFSL 379
Query: 385 GMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAIC 444
GMGGIPWVIMSE+FPI++KGSAGSLVT+VSW+GSWIISFTFNFLM W+ GTF+ F+ +C
Sbjct: 380 GMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVC 439
Query: 445 SLTVLFVAKLVPETKGRTLEEIQASM 470
TV+FVAKLVPETKGRTLEEIQ S+
Sbjct: 440 GATVIFVAKLVPETKGRTLEEIQYSI 465
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 554 bits (1427), Expect = e-157, Method: Compositional matrix adjust.
Identities = 261/436 (59%), Positives = 335/436 (76%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V LSTFVAVCGS+ FGS GYSSPAQ+ I NDL L++AE+SLFGS+LT GAMIGAI SG
Sbjct: 28 VYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGP 87
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
IAD +GR+G M S C++GW+ I+F+K LDLGRL GYGMG SYVVP++IAEI
Sbjct: 88 IADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIA 147
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK RG TT++Q++IC GVS++++IG + WR+LALIG IPC +GL FIPESPRWL
Sbjct: 148 PKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWL 207
Query: 217 AKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G+ E EAAL++LRG ADISEEAAEI++Y ETLERL + +L+LFQR+Y S+++
Sbjct: 208 AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIA 267
Query: 277 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPL 336
GLMV QQFGG+NGI FY SSIF AGF +GMI V+Q+ +T L ++D++GR+PL
Sbjct: 268 FGLMVFQQFGGINGICFYTSSIFEQAGFPTRLGMIIYAVLQVVITALNAPIVDRAGRKPL 327
Query: 337 LLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
LLVSA G +GCL+AA+SF + +A P LA+VG++VY GSFS GMG +PWV+MSE
Sbjct: 328 LLVSATGLVIGCLIAAVSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSE 387
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
+FPIN+KG AG + TLV+W G+W +S+TFNFLM WSS GTF ++AI +L ++FV +VP
Sbjct: 388 IFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAIVP 447
Query: 457 ETKGRTLEEIQASMNP 472
ETKG+TLE+IQA +NP
Sbjct: 448 ETKGKTLEQIQAIVNP 463
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 261/448 (58%), Positives = 337/448 (75%), Gaps = 1/448 (0%)
Query: 25 ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
E S + + V+ STFVAVCGS+ FGS +GYS+P QS I DL LS+AE+S+FGSILT
Sbjct: 32 EKESENNESYLMVLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILT 91
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
IGAM+GA+MSGKI+D+ GR+G M S CI GW+ + F+K A LD+GR GYG+G+
Sbjct: 92 IGAMLGAVMSGKISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVF 151
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLI 204
SYVVPVYIAEI+PKNLRGG TT++QLMI IG S+++LIG+ ++W+ LAL G PC+V L
Sbjct: 152 SYVVPVYIAEISPKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLF 211
Query: 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264
GLCFIPESPRWLAK G E ALQ+LRG DADI+ EA I+ + LE L + I +L
Sbjct: 212 GLCFIPESPRWLAKAGHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDL 271
Query: 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGF-SGSIGMIAMVVIQIPMTLL 323
+KY S+I+GV LMV QQF G+NGI FYAS F+ AGF SG +G IA+ +Q+P+T+L
Sbjct: 272 VSKKYGRSVIIGVSLMVFQQFVGINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVL 331
Query: 324 GVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFS 383
G +L+DKSGRRPL+++SA G LGC+L SFL + ++ P LA+ GVL+Y +FS
Sbjct: 332 GTILIDKSGRRPLIMISAGGIFLGCILTGTSFLLKGQSLLLEWVPSLAVGGVLIYVAAFS 391
Query: 384 LGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAI 443
+GMG +PWVIMSE+FPIN+KG AGSLV LV+W G+W +S+TFNFLM WSS GTF+ +SA
Sbjct: 392 IGMGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAF 451
Query: 444 CSLTVLFVAKLVPETKGRTLEEIQASMN 471
+ T++FVAK+VPETKG+TLEEIQA +
Sbjct: 452 AAATIIFVAKMVPETKGKTLEEIQACIR 479
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/448 (55%), Positives = 322/448 (71%), Gaps = 2/448 (0%)
Query: 25 ESGSG-SASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSIL 83
E+GS S A+ V LST +AVCGSY FG+ +GYS+P Q GI +L LS +++S+FGSIL
Sbjct: 22 ENGSDVSEEASWMVYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSIL 81
Query: 84 TIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL 143
+GA++GAI SGKI+D+IGR+G M S ++ IGW+II +K LD GR L GYG G
Sbjct: 82 NMGAVLGAITSGKISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGT 141
Query: 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQL 203
LS+VVPV+IAEI+P+ LRG T++QL I IG++ +LIGA +NWR LAL G PC+V
Sbjct: 142 LSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLF 201
Query: 204 IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263
G FIPESPRWL G+ + E ALQ+LRG A+I+ EA EI+EY +L L + +++
Sbjct: 202 FGTWFIPESPRWLEMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMD 261
Query: 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLL 323
L +K +IVGVGLM QQF G+NG+ FYA IF+SAG S ++G I + Q+ +T L
Sbjct: 262 LIDKKNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVVLTAL 321
Query: 324 G-VLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSF 382
G LL+D+ GRRPLL+ SA G +GCLL SFL + + P LA+ GVLVY GSF
Sbjct: 322 GATLLIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKAHGLALDIIPALAVSGVLVYIGSF 381
Query: 383 SLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSA 442
S+GMG IPWVIMSE+FPIN+KG+AG LVT+V+WL SW++SFTFNFLM WS GTF+ +
Sbjct: 382 SIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGG 441
Query: 443 ICSLTVLFVAKLVPETKGRTLEEIQASM 470
+C L ++F+AKLVPETKGRTLEEIQA M
Sbjct: 442 VCVLAIIFIAKLVPETKGRTLEEIQAMM 469
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 480 bits (1236), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/469 (50%), Positives = 332/469 (70%), Gaps = 10/469 (2%)
Query: 2 EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
E + LL+ K+Q + T+ V+LSTF+AVCGS+ FG ++GY+S A
Sbjct: 10 ERSIEERLLQLKNQ----------NDDSECRITACVILSTFIAVCGSFSFGVSLGYTSGA 59
Query: 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
+ GI DL LS+A++S F S+ T+GA IGA+ SGK+A +GRR TM SD++CIIGW I
Sbjct: 60 EIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSI 119
Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
F+K WL+ GR+ G G+GL+SYVVPVYIAEI+PK++RG FT +QL+ G++M Y
Sbjct: 120 AFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYF 179
Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
G FLNWRILAL+G +PC +Q+IGL F+PESPRWLAK G E E +L RLRG +ADIS
Sbjct: 180 SGNFLNWRILALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELENSLLRLRGGNADISR 239
Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
EA++I T+ +E S+ +LFQRKY ++L+VG+GLM++QQF G + + YAS+I
Sbjct: 240 EASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFSGSSAVLSYASTILRK 299
Query: 302 AGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQ 361
AGFS +IG + + IP ++GV+L+DK GRRPLLL S +G C+ +L ++F Q +Q
Sbjct: 300 AGFSVTIGSTLLGLFMIPKAMIGVILVDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKMQ 359
Query: 362 QWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 421
+ TP + V +Y G++++G+GG+PWVIMSE+FP+N+K +AGS+VTLVSW S I+
Sbjct: 360 LLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIV 419
Query: 422 SFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASM 470
++ FNFL++WS+ GTF+ F A+ L +LF+ LVPETKG +LEEIQAS+
Sbjct: 420 TYAFNFLLEWSTQGTFYVFGAVGGLALLFIWLLVPETKGLSLEEIQASL 468
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/440 (54%), Positives = 321/440 (72%)
Query: 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIM 93
T+ V+ STFV+VCGS+ FG A GYSS AQ+GI NDLGLSVA+YS+FGSI+T G MIGAI
Sbjct: 29 TAVVLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIF 88
Query: 94 SGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIA 153
SGK+AD +GR+GTM F+ I CI GWV + +K + WLD+GRL G+ +GLLSYV+PVYIA
Sbjct: 89 SGKVADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIA 148
Query: 154 EITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESP 213
EITPK++RG F +QLM G+S+ Y+IG F++WR LALIG IPC +Q++ L FIPESP
Sbjct: 149 EITPKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESP 208
Query: 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSL 273
R L K G E A+LQ LRG DADISEEA I+E + + +++LFQR+YA S+
Sbjct: 209 RLLGKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSV 268
Query: 274 IVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGR 333
++GVGLM+LQQ G +G+ +Y S+F GF SIG + + VI IP LLG++L++K GR
Sbjct: 269 VIGVGLMLLQQLSGSSGLMYYVGSVFDKGGFPSSIGSMILAVIMIPKALLGLILVEKMGR 328
Query: 334 RPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVI 393
RPLLL S G C LL + SF F+ + TP +GV+ + SF++GMGG+PW+I
Sbjct: 329 RPLLLASTGGMCFFSLLLSFSFCFRSYGMLDELTPIFTCIGVVGFISSFAVGMGGLPWII 388
Query: 394 MSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAK 453
MSE+FP+N+K SAG+LVTL +W WI++F +NF+++W+++GTF F IC ++F+
Sbjct: 389 MSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFMLEWNASGTFLIFFTICGAGIVFIYA 448
Query: 454 LVPETKGRTLEEIQASMNPF 473
+VPETKGRTLE+IQAS+ F
Sbjct: 449 MVPETKGRTLEDIQASLTDF 468
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/471 (49%), Positives = 327/471 (69%), Gaps = 8/471 (1%)
Query: 1 MEEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSP 60
+E GLS +E + ++ G T++V LSTFVAV GS+ G +G+SS
Sbjct: 30 LESGLSRKSPREVKK--------PQNDDGECRVTASVFLSTFVAVSGSFCTGCGVGFSSG 81
Query: 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
AQ+GIT DL LSVAEYS+FGSILT+G +IGA+ SGK+AD +GR+ TM F + CI GW+
Sbjct: 82 AQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCITGWLC 141
Query: 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY 180
+ ++ A WLD GRLL+G G+G+ SYV+PVYIAEI PK++RG F +QLM G+S+ +
Sbjct: 142 VALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLFF 201
Query: 181 LIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADIS 240
+IG F+ WR+L ++G +PC+ + L FIPESPRWLAK G+ E ++LQRLRG+D DIS
Sbjct: 202 IIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQRLRGSDVDIS 261
Query: 241 EEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI 300
EA IR+ + E E + ELFQR+YA+ LI+GVGLM LQQ G +G+ +YASS+F
Sbjct: 262 REANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGVTYYASSLFN 321
Query: 301 SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDL 360
GF +IG + I +P +L +L+DK GRR LL+ S + L LL ++S+ FQ
Sbjct: 322 KGGFPSAIGTSVIATIMVPKAMLATVLVDKMGRRTLLMASCSAMGLSALLLSVSYGFQSF 381
Query: 361 QQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWI 420
+ TP +GVL + SF++GMGG+PW+IM+E+FP+N+K SAG+LVT+ +WL WI
Sbjct: 382 GILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAEIFPMNVKVSAGTLVTVTNWLFGWI 441
Query: 421 ISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMN 471
I++TFNF+++W+++G F FS + + +++F+ LVPETKGR+LEEIQA +N
Sbjct: 442 ITYTFNFMLEWNASGMFLIFSMVSASSIVFIYFLVPETKGRSLEEIQALLN 492
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/472 (50%), Positives = 329/472 (69%), Gaps = 12/472 (2%)
Query: 1 MEEGLS--SSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYS 58
MEEG S LL+ K++ + T+ V+LSTFVAVCGS+ FG A GY+
Sbjct: 3 MEEGRSIEEGLLQLKNK----------NDDSECRITACVILSTFVAVCGSFSFGVATGYT 52
Query: 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW 118
S A++G+ DL LS+A++S FGS T+GA IGA+ G +A IGRRGTM SD +CI GW
Sbjct: 53 SGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGTMWVSDFLCITGW 112
Query: 119 VIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSM 178
+ I F+K L+ GR++ G G GL SYVVPVYIAEITPK++RG FT +QL+ G++M
Sbjct: 113 LSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTFSNQLLQNAGLAM 172
Query: 179 TYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADAD 238
Y G F+ WR LAL+G +PC +Q+IGL F+PESPRWLAK G E E +L RLRG DAD
Sbjct: 173 IYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELENSLFRLRGRDAD 232
Query: 239 ISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSI 298
IS EA+EI+ T+ +E S+ +LFQRKY ++L+VG+GLM++QQF G + YAS+I
Sbjct: 233 ISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVGIGLMLIQQFSGSAAVISYASTI 292
Query: 299 FISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ 358
F AGFS +IG + + IP ++G++L+DK GRRPLL+ SA G + C+L ++F Q
Sbjct: 293 FRKAGFSVAIGTTMLGIFVIPKAMIGLILVDKWGRRPLLMTSAFGMSMTCMLLGVAFTLQ 352
Query: 359 DLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS 418
+Q + TP L+ + V++Y ++++G+GG+PWVIMSE+FPIN+K +AGS+VTLVS+ S
Sbjct: 353 KMQLLSELTPILSFICVMMYIATYAIGLGGLPWVIMSEIFPINIKVTAGSIVTLVSFSSS 412
Query: 419 WIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASM 470
I+++ FNFL +WS+ GTFF F+ I +LF+ LVPETKG +LEEIQ S+
Sbjct: 413 SIVTYAFNFLFEWSTQGTFFIFAGIGGAALLFIWLLVPETKGLSLEEIQVSL 464
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/463 (48%), Positives = 324/463 (69%)
Query: 9 LLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITND 68
+++E+++ G ++ T+ V+LSTFVAVC ++ +G A GY+S A++ I +
Sbjct: 2 VVEEENRSMEEGLLQHQNDRDDRRITACVILSTFVAVCSAFSYGCAAGYTSGAETAIMKE 61
Query: 69 LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW 128
L LS+A++S FGS L +G +GA+ SG++A +GRR T+ D C+ GW+ I F+K +
Sbjct: 62 LDLSMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRTLWACDFFCVFGWLSIAFAKNVF 121
Query: 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNW 188
WLDLGR+ +G G+GL+SYVVPVYIAEITPK++RG FT +QL+ GVS+ Y G +NW
Sbjct: 122 WLDLGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINW 181
Query: 189 RILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE 248
R++A+IG IPC++Q IG+ FIPESPRWLAK E E++L RLRG D D+S EAAEI+
Sbjct: 182 RVMAVIGAIPCILQTIGIFFIPESPRWLAKIRLSKEVESSLHRLRGKDTDVSGEAAEIQV 241
Query: 249 YTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSI 308
T+ LE S+ ++FQ+KY +L+VG+GLM++QQ G +GI +Y+++IF AGFS +
Sbjct: 242 MTKMLEEDSKSSFSDMFQKKYRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFSERL 301
Query: 309 GMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368
G + V IP L+G++L+D+ GRRPLLL SA G +G LL +SF Q + + P
Sbjct: 302 GSMIFGVFVIPKALVGLILVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQQMNVLPELIP 361
Query: 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 428
V +LVY G F+ G+GG+PWVIMSE+FPIN+K SAG++V L SW W +S+ FNF+
Sbjct: 362 IFVFVNILVYFGCFAFGIGGLPWVIMSEIFPINIKVSAGTIVALTSWTSGWFVSYAFNFM 421
Query: 429 MKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMN 471
+WS+ GTF+ F+A+ ++ +F+ LVPETKG++LEE+QAS+
Sbjct: 422 FEWSAQGTFYIFAAVGGMSFIFIWMLVPETKGQSLEELQASLT 464
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/447 (49%), Positives = 317/447 (70%)
Query: 25 ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
E+ T+ V+LSTFVAVC S+ +G A GY+S A++ I +L LS+A++S FGS L
Sbjct: 9 ENDRDDRRITACVILSTFVAVCSSFSYGCANGYTSGAETAIMKELDLSMAQFSAFGSFLN 68
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
+G +GA+ SG++A +GRR T+ D+ CI GW+ I F+K WLDLGR+ +G G+GL
Sbjct: 69 LGGAVGALFSGQLAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLGRISLGIGVGLT 128
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLI 204
SYVVPVYIAEITPK++RG F+ L+ G+S+ Y G +NWR+LA+IG +PC + +I
Sbjct: 129 SYVVPVYIAEITPKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAVIGALPCFIPVI 188
Query: 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264
G+ FIPESPRWLAK G E E +L RLRG DAD+S+EAAEI+ T+ LE S+ ++
Sbjct: 189 GIYFIPESPRWLAKIGSVKEVENSLHRLRGKDADVSDEAAEIQVMTKMLEEDSKSSFCDM 248
Query: 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLG 324
FQ+KY +L+VG+GLM++QQ G +GI +Y+++IF AGFS +G + V IP L+G
Sbjct: 249 FQKKYRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVG 308
Query: 325 VLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSL 384
++L+D+ GRRPLLL SA G +G LL +SF Q++ + + P + +LVY G F++
Sbjct: 309 LILVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQEMNLFPEFIPVFVFINILVYFGFFAI 368
Query: 385 GMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAIC 444
G+GG+PW+IMSE+FPIN+K SAGS+V L SW W +S+ FNF+ +WS+ GTF+ F+ +
Sbjct: 369 GIGGLPWIIMSEIFPINIKVSAGSIVALTSWTTGWFVSYGFNFMFEWSAQGTFYIFAMVG 428
Query: 445 SLTVLFVAKLVPETKGRTLEEIQASMN 471
L++LF+ LVPETKG++LEE+QAS+
Sbjct: 429 GLSLLFIWMLVPETKGQSLEELQASLT 455
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 474 | ||||||
| 224125374 | 442 | predicted protein [Populus trichocarpa] | 0.924 | 0.990 | 0.847 | 0.0 | |
| 255542520 | 488 | sugar transporter, putative [Ricinus com | 0.932 | 0.905 | 0.830 | 0.0 | |
| 298205031 | 517 | unnamed protein product [Vitis vinifera] | 1.0 | 0.916 | 0.741 | 0.0 | |
| 225451069 | 488 | PREDICTED: putative ERD6-like transporte | 1.0 | 0.971 | 0.741 | 0.0 | |
| 356504068 | 486 | PREDICTED: sugar transporter ERD6-like 5 | 0.987 | 0.962 | 0.734 | 0.0 | |
| 449435707 | 479 | PREDICTED: sugar transporter ERD6-like 5 | 0.991 | 0.981 | 0.706 | 0.0 | |
| 449485745 | 479 | PREDICTED: sugar transporter ERD6-like 5 | 0.991 | 0.981 | 0.704 | 0.0 | |
| 124361039 | 481 | General substrate transporter; Sugar tra | 0.934 | 0.920 | 0.734 | 0.0 | |
| 356571144 | 478 | PREDICTED: sugar transporter ERD6-like 5 | 0.995 | 0.987 | 0.695 | 0.0 | |
| 357512085 | 495 | Sugar transporter ERD6, putative [Medica | 0.934 | 0.894 | 0.710 | 0.0 |
| >gi|224125374|ref|XP_002319570.1| predicted protein [Populus trichocarpa] gi|222857946|gb|EEE95493.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/438 (84%), Positives = 400/438 (91%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
VVLST VAV GSYVFGSAIGYSSP QSGI DLGLSVAEYSLFGSILTIGAMIGAIMSG+
Sbjct: 2 VVLSTLVAVSGSYVFGSAIGYSSPTQSGIMEDLGLSVAEYSLFGSILTIGAMIGAIMSGR 61
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
IADYIGRRGTMGFS+I+CIIGW++I FSKA+WWLD+GRLLVGYGMGLLSYV+P+YIAEIT
Sbjct: 62 IADYIGRRGTMGFSEIICIIGWMLITFSKASWWLDVGRLLVGYGMGLLSYVIPIYIAEIT 121
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PKNLRGGFTTVHQLMIC GVS+TYLIGAF++WR LALIGTIPC+VQ++GL FIPESPRWL
Sbjct: 122 PKNLRGGFTTVHQLMICCGVSITYLIGAFMSWRSLALIGTIPCIVQIVGLFFIPESPRWL 181
Query: 217 AKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G+G E E ALQ LRG +ADIS+EAAEIR+YTET+ +LSE I ELFQ KYAHSLIVG
Sbjct: 182 AKIGQGKECEVALQCLRGHNADISDEAAEIRDYTETILQLSEASIFELFQWKYAHSLIVG 241
Query: 277 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPL 336
VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVV+QIPMT LGV+LMD SGRRPL
Sbjct: 242 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVVQIPMTALGVVLMDISGRRPL 301
Query: 337 LLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
L+VSAAGTCLGC LAALSFL Q L + + +PFLAL GVL+YTGSFSLGMGGIPWVIMSE
Sbjct: 302 LMVSAAGTCLGCFLAALSFLLQYLNKSVAVSPFLALFGVLIYTGSFSLGMGGIPWVIMSE 361
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
VFPIN KGSAGSLVTLVSWLGSWIIS+ FNFLM WSS GTFF FS IC LTVLFVAKLVP
Sbjct: 362 VFPINTKGSAGSLVTLVSWLGSWIISYAFNFLMDWSSAGTFFIFSCICGLTVLFVAKLVP 421
Query: 457 ETKGRTLEEIQASMNPFS 474
ETKGRTLEEIQASMNP S
Sbjct: 422 ETKGRTLEEIQASMNPLS 439
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542520|ref|XP_002512323.1| sugar transporter, putative [Ricinus communis] gi|223548284|gb|EEF49775.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/442 (83%), Positives = 395/442 (89%)
Query: 33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAI 92
AT VV+ST +AV GSYVFGSA+GYSSP QSGI DL LSVAEYSLFGSILTIGAMIGAI
Sbjct: 44 ATLVVVMSTLIAVSGSYVFGSAVGYSSPTQSGIMQDLDLSVAEYSLFGSILTIGAMIGAI 103
Query: 93 MSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYI 152
MSG+IADYIGRRGTMGFS+I CIIGW+ I FSK + WLD+GRLLVGYGMGLLSYVVPVYI
Sbjct: 104 MSGRIADYIGRRGTMGFSEIFCIIGWLAIAFSKVSLWLDVGRLLVGYGMGLLSYVVPVYI 163
Query: 153 AEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPES 212
AEITPKNLRGGFTTVHQ MIC GVS+TYLIGAF++WR LALIGTIPCL+QL+GL IPES
Sbjct: 164 AEITPKNLRGGFTTVHQFMICCGVSVTYLIGAFISWRTLALIGTIPCLIQLLGLFLIPES 223
Query: 213 PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHS 272
PRWLAK G+ E EAALQRLRG + DIS EAA+IR+YTE L++ SE I ELFQ KYAHS
Sbjct: 224 PRWLAKIGRLKECEAALQRLRGGNTDISGEAADIRDYTEFLQQHSEASIFELFQWKYAHS 283
Query: 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSG 332
LIVGVGLMVLQQFGGVNG+AFYASSIFISAGFSGSIG IAMVV+Q+PMT LGVLLMD SG
Sbjct: 284 LIVGVGLMVLQQFGGVNGVAFYASSIFISAGFSGSIGTIAMVVVQVPMTALGVLLMDISG 343
Query: 333 RRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWV 392
RRPLLLVSAAGTCLGCLLAA+SFL QDL W+ +PFLAL GVL+YTGSFSLGMGGIPWV
Sbjct: 344 RRPLLLVSAAGTCLGCLLAAMSFLLQDLHTWMNFSPFLALTGVLIYTGSFSLGMGGIPWV 403
Query: 393 IMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVA 452
IMSEVFPINMKGSAGSLVTLVSWLGSWIIS+ FNFLM WSS GTF FS+IC LTVLFVA
Sbjct: 404 IMSEVFPINMKGSAGSLVTLVSWLGSWIISYAFNFLMTWSSAGTFLIFSSICGLTVLFVA 463
Query: 453 KLVPETKGRTLEEIQASMNPFS 474
KLVPETKGRTLEEIQASMNP S
Sbjct: 464 KLVPETKGRTLEEIQASMNPVS 485
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205031|emb|CBI34338.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/475 (74%), Positives = 403/475 (84%), Gaps = 1/475 (0%)
Query: 1 MEEG-LSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSS 59
+EEG LSS L+ G S G G +SATS +VLST +AVCGSYVFG+A+GYSS
Sbjct: 35 IEEGQLSSPLIVADKPCENGCSGDGHEEMGGSSATSVLVLSTLIAVCGSYVFGTAVGYSS 94
Query: 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV 119
PA+SGI ++LGLS+AEYSLFGSILTIGAM+GAI+SG+IAD IGRRG MGFS++ CI+GW+
Sbjct: 95 PAESGIMDELGLSLAEYSLFGSILTIGAMLGAIVSGRIADLIGRRGAMGFSEVFCIMGWL 154
Query: 120 IIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT 179
+VFSK AWWLD GRL +G GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC G S+T
Sbjct: 155 AVVFSKDAWWLDFGRLSIGCGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICCGSSIT 214
Query: 180 YLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADI 239
+L+G +NWRILALIGTIPCL+Q++GL FIPESPRWLA++G+ + E ALQRLRG A I
Sbjct: 215 FLLGTLVNWRILALIGTIPCLIQIVGLPFIPESPRWLARSGRWQDCEDALQRLRGEGAII 274
Query: 240 SEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF 299
S+EAAEI++Y+ETL+RLSE IL+LFQ YA SLIVGVGLMVLQQFGGVN I FYAS+IF
Sbjct: 275 SQEAAEIKDYSETLQRLSEATILDLFQWTYARSLIVGVGLMVLQQFGGVNAIVFYASAIF 334
Query: 300 ISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQD 359
+SAGFSG +G IAMV +QIPMT LG +LMDKSGRRPLLL SAAGTCLGC +SFL Q
Sbjct: 335 VSAGFSGRVGSIAMVAVQIPMTTLGTILMDKSGRRPLLLASAAGTCLGCFFVGISFLLQG 394
Query: 360 LQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSW 419
LQ W + P AL+GVL+Y G+FSLGMGGIPWVIMSE+FPINMKGSAGSLVTLVSWLGSW
Sbjct: 395 LQGWKELGPIFALLGVLIYDGAFSLGMGGIPWVIMSEIFPINMKGSAGSLVTLVSWLGSW 454
Query: 420 IISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 474
IIS+ FNFLMKWSS GTFF FS+IC +TVLFVAKLVPETKGRTLEEIQASMNP S
Sbjct: 455 IISYAFNFLMKWSSAGTFFIFSSICGITVLFVAKLVPETKGRTLEEIQASMNPLS 509
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451069|ref|XP_002263418.1| PREDICTED: putative ERD6-like transporter [Vitis vinifera] gi|310877850|gb|ADP37156.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/475 (74%), Positives = 403/475 (84%), Gaps = 1/475 (0%)
Query: 1 MEEG-LSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSS 59
+EEG LSS L+ G S G G +SATS +VLST +AVCGSYVFG+A+GYSS
Sbjct: 6 IEEGQLSSPLIVADKPCENGCSGDGHEEMGGSSATSVLVLSTLIAVCGSYVFGTAVGYSS 65
Query: 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV 119
PA+SGI ++LGLS+AEYSLFGSILTIGAM+GAI+SG+IAD IGRRG MGFS++ CI+GW+
Sbjct: 66 PAESGIMDELGLSLAEYSLFGSILTIGAMLGAIVSGRIADLIGRRGAMGFSEVFCIMGWL 125
Query: 120 IIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT 179
+VFSK AWWLD GRL +G GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC G S+T
Sbjct: 126 AVVFSKDAWWLDFGRLSIGCGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICCGSSIT 185
Query: 180 YLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADI 239
+L+G +NWRILALIGTIPCL+Q++GL FIPESPRWLA++G+ + E ALQRLRG A I
Sbjct: 186 FLLGTLVNWRILALIGTIPCLIQIVGLPFIPESPRWLARSGRWQDCEDALQRLRGEGAII 245
Query: 240 SEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF 299
S+EAAEI++Y+ETL+RLSE IL+LFQ YA SLIVGVGLMVLQQFGGVN I FYAS+IF
Sbjct: 246 SQEAAEIKDYSETLQRLSEATILDLFQWTYARSLIVGVGLMVLQQFGGVNAIVFYASAIF 305
Query: 300 ISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQD 359
+SAGFSG +G IAMV +QIPMT LG +LMDKSGRRPLLL SAAGTCLGC +SFL Q
Sbjct: 306 VSAGFSGRVGSIAMVAVQIPMTTLGTILMDKSGRRPLLLASAAGTCLGCFFVGISFLLQG 365
Query: 360 LQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSW 419
LQ W + P AL+GVL+Y G+FSLGMGGIPWVIMSE+FPINMKGSAGSLVTLVSWLGSW
Sbjct: 366 LQGWKELGPIFALLGVLIYDGAFSLGMGGIPWVIMSEIFPINMKGSAGSLVTLVSWLGSW 425
Query: 420 IISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 474
IIS+ FNFLMKWSS GTFF FS+IC +TVLFVAKLVPETKGRTLEEIQASMNP S
Sbjct: 426 IISYAFNFLMKWSSAGTFFIFSSICGITVLFVAKLVPETKGRTLEEIQASMNPLS 480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504068|ref|XP_003520821.1| PREDICTED: sugar transporter ERD6-like 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/474 (73%), Positives = 399/474 (84%), Gaps = 6/474 (1%)
Query: 5 LSSSLLKEKSQVHGGGSSGGESGSGSASATSAV----VLSTFVAVCGSYVFGSAIGYSSP 60
SS LL +Q +GG + G + T +V +L+T VAV GSYVFGSA+GYSSP
Sbjct: 12 FSSPLLPIGAQGYGG-NHGNDYEEKRQKETWSVPPILILTTLVAVSGSYVFGSAVGYSSP 70
Query: 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
AQ+GI +DL + VAEYSLFGSILTIGAMIGAI+SG+IADY GRR MGFS++ CI+GW+
Sbjct: 71 AQTGIMDDLNVGVAEYSLFGSILTIGAMIGAIISGRIADYAGRRTAMGFSEVFCILGWLA 130
Query: 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY 180
I F+K WWL +GRL VG GMGLLSYVVP+YIAEITPKNLRGGFTTVHQLMIC GVS+TY
Sbjct: 131 IAFAKVGWWLYVGRLFVGCGMGLLSYVVPIYIAEITPKNLRGGFTTVHQLMICCGVSLTY 190
Query: 181 LIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADIS 240
L+GAFLNWRILAL+G IPC+VQL+GL FIPESPRWLAK G SE+ LQRLRG +AD+S
Sbjct: 191 LVGAFLNWRILALLGIIPCIVQLLGLFFIPESPRWLAKFGHWERSESVLQRLRGKNADVS 250
Query: 241 EEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI 300
+EA EIR++TE L+R +E I+ LFQ +Y SL VGVGLM+LQQFGGVNGIAFYASSIFI
Sbjct: 251 QEATEIRDFTEALQRETES-IIGLFQLQYLKSLTVGVGLMILQQFGGVNGIAFYASSIFI 309
Query: 301 SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDL 360
SAGFSGSIGMIAMV +QIPMT LGVLLMDKSGRRPLLL+SA+GTCLGC LAALSF QDL
Sbjct: 310 SAGFSGSIGMIAMVAVQIPMTALGVLLMDKSGRRPLLLISASGTCLGCFLAALSFTLQDL 369
Query: 361 QQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWI 420
+W + +P LAL GVLVYTGSFSLGMGGIPWVIMSE+FPIN+KGSAGSLVTLVSWL SWI
Sbjct: 370 HKWKEGSPILALAGVLVYTGSFSLGMGGIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWI 429
Query: 421 ISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 474
+S+ FNFLM WSS GTFF FS+IC T+LFVAKLVPETKGRTLEE+QAS+NP+S
Sbjct: 430 VSYAFNFLMSWSSAGTFFIFSSICGFTILFVAKLVPETKGRTLEEVQASLNPYS 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435707|ref|XP_004135636.1| PREDICTED: sugar transporter ERD6-like 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/473 (70%), Positives = 396/473 (83%), Gaps = 3/473 (0%)
Query: 2 EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
E G L++ + GGSSGG + + SAT +++ ST VAV GSYVFG+AIGYSSP+
Sbjct: 7 ETGQLCPLIETHNHDFHGGSSGGRA---TGSATFSLIFSTLVAVSGSYVFGTAIGYSSPS 63
Query: 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
++GI DL L+V+EYS FGSILTIGAMIGAI+SGK+ADYIGRRGTMGF++I C++GW +I
Sbjct: 64 EAGIMTDLDLTVSEYSFFGSILTIGAMIGAIVSGKLADYIGRRGTMGFAEIFCLLGWFLI 123
Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
FSKA WWLD+GR+LVG+GMG++SYVVPV+IAEITPK LRG FTTVHQLMIC GVS+T+L
Sbjct: 124 AFSKAVWWLDIGRILVGFGMGVISYVVPVFIAEITPKELRGAFTTVHQLMICFGVSLTWL 183
Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
IGAF+NWR LALIG IP ++QL+GL F PESPRWL K G+G++ E ALQRLRG DIS
Sbjct: 184 IGAFVNWRTLALIGAIPSVIQLVGLPFTPESPRWLTKNGQGLDCEDALQRLRGKTKDIST 243
Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
E EI+EYTE L++L E +L+LFQR+YA SL VG+GLMVLQQFGGVNGIAFY +S+F S
Sbjct: 244 EVLEIQEYTELLKQLPEPSVLDLFQRQYARSLFVGLGLMVLQQFGGVNGIAFYVTSLFTS 303
Query: 302 AGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQ 361
AGFSG+IG IA+ +QIPMT LGV+LMD SGRRPLL++SAAGTCLG L ALSFLF+DLQ
Sbjct: 304 AGFSGNIGTIALASVQIPMTALGVVLMDVSGRRPLLMISAAGTCLGSLCLALSFLFKDLQ 363
Query: 362 QWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 421
W +P +AL GVLVY+GSFSLGMG IPWVIMSE+FPINMKG AGSLVTLVSWLGSWI+
Sbjct: 364 LWQSGSPMMALAGVLVYSGSFSLGMGAIPWVIMSEIFPINMKGLAGSLVTLVSWLGSWIV 423
Query: 422 SFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 474
S++FNFL+ WSSTG FF FS+IC TVLFVAK VPETKGRTLEEIQA+MNP S
Sbjct: 424 SYSFNFLLNWSSTGIFFIFSSICGFTVLFVAKFVPETKGRTLEEIQAAMNPLS 476
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449485745|ref|XP_004157263.1| PREDICTED: sugar transporter ERD6-like 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/473 (70%), Positives = 396/473 (83%), Gaps = 3/473 (0%)
Query: 2 EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
E G L++ + GGSSGG + + SAT +++ ST VAV GSYVFG+AIGYSSP+
Sbjct: 7 ETGQLCPLIETHNHDFHGGSSGGRA---TGSATFSLIFSTLVAVSGSYVFGTAIGYSSPS 63
Query: 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
++GI DL L+V+EYS FGSILTIGAMIGAI+SGK+ADYIGRRGTMGF++I C++GW +I
Sbjct: 64 EAGIMTDLDLTVSEYSFFGSILTIGAMIGAIVSGKLADYIGRRGTMGFAEIFCLLGWFLI 123
Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
FSKA WWLD+GR+LVG+GMG++SYVVPV+IAEITPK LRG FTTVHQLMIC GVS+T+L
Sbjct: 124 AFSKAVWWLDIGRILVGFGMGVISYVVPVFIAEITPKELRGAFTTVHQLMICFGVSLTWL 183
Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
IGAF+NWR LALIG IP ++QL+GL F PESPRWL K G+G++ E ALQRLRG DIS
Sbjct: 184 IGAFVNWRTLALIGAIPSVIQLVGLPFTPESPRWLTKNGQGLDCEDALQRLRGKTKDIST 243
Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
E EI+EYTE L++L E +L+LFQR+YA SL VG+GLMVLQQFGGVNGIAFY +S+F S
Sbjct: 244 EVLEIQEYTELLKQLPEPSVLDLFQRQYARSLFVGLGLMVLQQFGGVNGIAFYVTSLFTS 303
Query: 302 AGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQ 361
AGFSG+IG IA+ +QIPMT LGV+LMD SGRRPLL++SAAGTCLG L ALSFLF+DLQ
Sbjct: 304 AGFSGNIGTIALASVQIPMTALGVVLMDVSGRRPLLMISAAGTCLGSLCLALSFLFKDLQ 363
Query: 362 QWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 421
W +P +AL GVLVY+GSFSLGMG IPWVIMSE+FPINMKG AGSLVTLVSWLGSWI+
Sbjct: 364 LWQSGSPMMALAGVLVYSGSFSLGMGAIPWVIMSEIFPINMKGLAGSLVTLVSWLGSWIV 423
Query: 422 SFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 474
S++FNFL+ WSS+G FF FS+IC TVLFVAK VPETKGRTLEEIQA+MNP S
Sbjct: 424 SYSFNFLLNWSSSGIFFIFSSICGFTVLFVAKFVPETKGRTLEEIQAAMNPLS 476
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124361039|gb|ABN09011.1| General substrate transporter; Sugar transporter superfamily [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/445 (73%), Positives = 377/445 (84%), Gaps = 2/445 (0%)
Query: 29 GSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAM 88
S+ TS ++L+T AV GSYVFGSA+GYSSPAQSGIT+DL L VAEYSLFGSILTIGAM
Sbjct: 19 ASSVPTSILILTTLAAVSGSYVFGSAVGYSSPAQSGITDDLNLGVAEYSLFGSILTIGAM 78
Query: 89 IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVV 148
+GAI+SG +ADY GRR MGFS++ CI+GW+ I SK AWWL +GRLL+G GMG+LSYVV
Sbjct: 79 VGAIVSGSLADYAGRRAAMGFSELFCILGWLAIAVSKVAWWLYVGRLLLGCGMGILSYVV 138
Query: 149 PVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCF 208
P+YIAEITPK+LRGGFT VHQLMIC GVS+TYLIGAFLNWR+LA+IGTIPCL QL+ L F
Sbjct: 139 PIYIAEITPKDLRGGFTAVHQLMICFGVSLTYLIGAFLNWRLLAIIGTIPCLAQLLSLSF 198
Query: 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK 268
IPESPRWLAK G+ SE+ LQ LRG + DISEEA EIRE+TE ++ +E I LFQ +
Sbjct: 199 IPESPRWLAKVGRLERSESTLQHLRGKNVDISEEATEIREFTEASQQQTEANIFGLFQLQ 258
Query: 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLM 328
Y SL VGVGL++LQQFGGVN IAFYASSIF+SAGFS SIG IAMVV+QIPMT LGV+LM
Sbjct: 259 YLKSLTVGVGLIILQQFGGVNAIAFYASSIFVSAGFSRSIGTIAMVVVQIPMTALGVILM 318
Query: 329 DKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGG 388
DKSGRRPLLL+SA+GTCLGC L +LSF QDL + + +P LALVGVLVYTGSFSLGMGG
Sbjct: 319 DKSGRRPLLLISASGTCLGCFLVSLSFYLQDLHK--EFSPILALVGVLVYTGSFSLGMGG 376
Query: 389 IPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTV 448
IPWVIMSE+FPIN+KGSAGS VT V WL SWI+S+ FNFLM W+S GTFF FS IC LT+
Sbjct: 377 IPWVIMSEIFPINVKGSAGSFVTFVHWLCSWIVSYAFNFLMSWNSAGTFFIFSTICGLTI 436
Query: 449 LFVAKLVPETKGRTLEEIQASMNPF 473
LFVAKLVPETKGRTLEE+QAS+NP+
Sbjct: 437 LFVAKLVPETKGRTLEEVQASLNPY 461
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571144|ref|XP_003553740.1| PREDICTED: sugar transporter ERD6-like 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/473 (69%), Positives = 387/473 (81%), Gaps = 1/473 (0%)
Query: 2 EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
+ SS LL + S G+ G S+S + ++++T VAV GSYVFGSAIGYSSP
Sbjct: 4 KTDFSSPLLPTSYGPNDAVDSQGK-GPSSSSIPTTLIITTLVAVFGSYVFGSAIGYSSPT 62
Query: 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
QS I DL L VA+YS+FGSILTIGAMIGA++SG+IADY GRR MGFS + CI+GW+ I
Sbjct: 63 QSAIMRDLNLGVAQYSIFGSILTIGAMIGAVVSGRIADYAGRRVAMGFSQVFCILGWLAI 122
Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
FSK AWWL +GRLLVG G+GLLSYVVPVY+AEITPKNLRG FT VHQLMIC G+S+TYL
Sbjct: 123 TFSKVAWWLYVGRLLVGCGIGLLSYVVPVYVAEITPKNLRGAFTAVHQLMICCGMSLTYL 182
Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
IGA++NWRILA IG IPCLVQL+ L FIP+SPRWLAK G+ ES++ALQRLRG +AD+ +
Sbjct: 183 IGAYVNWRILATIGIIPCLVQLLSLPFIPDSPRWLAKAGRLKESDSALQRLRGKNADVYQ 242
Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
EA EIR++TE ++ +E I+ LFQ +Y SL VGVGLM+LQQFGG+NGI FYA+SIFIS
Sbjct: 243 EATEIRDHTEAFQKQTEASIIGLFQMQYLKSLTVGVGLMILQQFGGINGIVFYANSIFIS 302
Query: 302 AGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQ 361
+GFS SIG IA+V ++IPMT +GVLLMDKSGRRPLLLVSA GTC+GC LAALSF+ QDL
Sbjct: 303 SGFSESIGTIAIVAVKIPMTTIGVLLMDKSGRRPLLLVSAVGTCVGCFLAALSFVLQDLH 362
Query: 362 QWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 421
+W +P LALVGVLVY GS+S+GMG IPWVIMSE+FPIN+KGSAGSLVTLVSWL SWII
Sbjct: 363 KWKGVSPILALVGVLVYVGSYSIGMGAIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWII 422
Query: 422 SFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 474
S+ FNFLM WSS GTFF FS IC TVLFVAKLVPETKGRTLEEIQAS+N +S
Sbjct: 423 SYAFNFLMSWSSAGTFFMFSGICGFTVLFVAKLVPETKGRTLEEIQASLNSYS 475
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512085|ref|XP_003626331.1| Sugar transporter ERD6, putative [Medicago truncatula] gi|355501346|gb|AES82549.1| Sugar transporter ERD6, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/459 (71%), Positives = 377/459 (82%), Gaps = 16/459 (3%)
Query: 29 GSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAM 88
S+ TS ++L+T AV GSYVFGSA+GYSSPAQSGIT+DL L VAEYSLFGSILTIGAM
Sbjct: 19 ASSVPTSILILTTLAAVSGSYVFGSAVGYSSPAQSGITDDLNLGVAEYSLFGSILTIGAM 78
Query: 89 IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVV 148
+GAI+SG +ADY GRR MGFS++ CI+GW+ I SK AWWL +GRLL+G GMG+LSYVV
Sbjct: 79 VGAIVSGSLADYAGRRAAMGFSELFCILGWLAIAVSKVAWWLYVGRLLLGCGMGILSYVV 138
Query: 149 PVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCF 208
P+YIAEITPK+LRGGFT VHQLMIC GVS+TYLIGAFLNWR+LA+IGTIPCL QL+ L F
Sbjct: 139 PIYIAEITPKDLRGGFTAVHQLMICFGVSLTYLIGAFLNWRLLAIIGTIPCLAQLLSLSF 198
Query: 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETL--------------E 254
IPESPRWLAK G+ SE+ LQ LRG + DISEEA EIR Y ++L +
Sbjct: 199 IPESPRWLAKVGRLERSESTLQHLRGKNVDISEEATEIRVYNKSLFIRVLTFGLSSKASQ 258
Query: 255 RLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMV 314
+ +E I LFQ +Y SL VGVGL++LQQFGGVN IAFYASSIF+SAGFS SIG IAMV
Sbjct: 259 QQTEANIFGLFQLQYLKSLTVGVGLIILQQFGGVNAIAFYASSIFVSAGFSRSIGTIAMV 318
Query: 315 VIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVG 374
V+QIPMT LGV+LMDKSGRRPLLL+SA+GTCLGC L +LSF QDL + + +P LALVG
Sbjct: 319 VVQIPMTALGVILMDKSGRRPLLLISASGTCLGCFLVSLSFYLQDLHK--EFSPILALVG 376
Query: 375 VLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSST 434
VLVYTGSFSLGMGGIPWVIMSE+FPIN+KGSAGS VT V WL SWI+S+ FNFLM W+S
Sbjct: 377 VLVYTGSFSLGMGGIPWVIMSEIFPINVKGSAGSFVTFVHWLCSWIVSYAFNFLMSWNSA 436
Query: 435 GTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPF 473
GTFF FS IC LT+LFVAKLVPETKGRTLEE+QAS+NP+
Sbjct: 437 GTFFIFSTICGLTILFVAKLVPETKGRTLEEVQASLNPY 475
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 474 | ||||||
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.915 | 0.923 | 0.665 | 7.6e-151 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.919 | 0.941 | 0.527 | 1.1e-124 | |
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.911 | 0.896 | 0.533 | 4.4e-123 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.915 | 0.907 | 0.486 | 1.8e-112 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.915 | 0.923 | 0.501 | 4.6e-112 | |
| TAIR|locus:2092379 | 488 | AT3G20460 [Arabidopsis thalian | 0.915 | 0.889 | 0.456 | 7e-109 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.917 | 0.877 | 0.466 | 8.1e-108 | |
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.915 | 0.915 | 0.474 | 1e-107 | |
| TAIR|locus:505006329 | 467 | AT3G05165 [Arabidopsis thalian | 0.915 | 0.929 | 0.453 | 3.5e-107 | |
| TAIR|locus:2096234 | 458 | AT3G05160 [Arabidopsis thalian | 0.915 | 0.947 | 0.451 | 1.4e-105 |
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
Identities = 289/434 (66%), Positives = 332/434 (76%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
++L+TFVAV GS+VFGSAIGYSSP QS +T +L LSVAEYSLFGSILTIGAMIGA MSG+
Sbjct: 32 LLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGR 91
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
IAD IGRR TMGFS++ CI+GW+ I SK A WLD+GR LVGYGMG+ S+VVPVYIAEIT
Sbjct: 92 IADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEIT 151
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK LRGGFTTVHQL+IC+GVS+TYL+G+F+ WRILALIG IPC+VQ++GL IPESPRWL
Sbjct: 152 PKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWL 211
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK GK E E ALQRLRG YT L LSEG I++LFQ +YA SL+VG
Sbjct: 212 AKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVG 271
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
VGLMVLQQFGGVN MVV+QIPMT LGVLLMDKSGRRPL
Sbjct: 272 VGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPL 331
Query: 337 LLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
LL+S SF Q ++Q +LAL GVLVYTGSFSLGMGGIPWVIMSE
Sbjct: 332 LLISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTGVLVYTGSFSLGMGGIPWVIMSE 391
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
+FPI++KGSAGSLVT+VSW+GSWIISFTFNFLM W+ GTF+ F+ +C TV+FVAKLVP
Sbjct: 392 IFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAKLVP 451
Query: 457 ETKGRTLEEIQASM 470
ETKGRTLEEIQ S+
Sbjct: 452 ETKGRTLEEIQYSI 465
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
Identities = 230/436 (52%), Positives = 298/436 (68%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V LSTFVAVCGS+ FGS GYSSPAQ+ I NDL L++AE+SLFGS+LT GAMIGAI SG
Sbjct: 28 VYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGP 87
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
IAD +GR+G M S C++GW+ I+F+K LDLGRL GYGMG SYVVP++IAEI
Sbjct: 88 IADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIA 147
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK RG TT++Q++IC GVS++++IG + WR+LALIG IPC +GL FIPESPRWL
Sbjct: 148 PKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWL 207
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G+ E EAAL++LRG Y ETLERL + +L+LFQR+Y S+++
Sbjct: 208 AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIA 267
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
GLMV QQFGG+N V+Q+ +T L ++D++GR+PL
Sbjct: 268 FGLMVFQQFGGINGICFYTSSIFEQAGFPTRLGMIIYAVLQVVITALNAPIVDRAGRKPL 327
Query: 337 LLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
LLVS SF + +A P LA+VG++VY GSFS GMG +PWV+MSE
Sbjct: 328 LLVSATGLVIGCLIAAVSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSE 387
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
+FPIN+KG AG + TLV+W G+W +S+TFNFLM WSS GTF ++AI +L ++FV +VP
Sbjct: 388 IFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAIVP 447
Query: 457 ETKGRTLEEIQASMNP 472
ETKG+TLE+IQA +NP
Sbjct: 448 ETKGKTLEQIQAIVNP 463
|
|
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 231/433 (53%), Positives = 299/433 (69%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V+ STFVAVCGS+ FGS +GYS+P QS I DL LS+AE+S+FGSILTIGAM+GA+MSGK
Sbjct: 44 VLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGK 103
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
I+D+ GR+G M S CI GW+ + F+K A LD+GR GYG+G+ SYVVPVYIAEI+
Sbjct: 104 ISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEIS 163
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PKNLRGG TT++QLMI IG S+++LIG+ ++W+ LAL G PC+V L GLCFIPESPRWL
Sbjct: 164 PKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWL 223
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G E ALQ+LRG + LE L + I +L +KY S+I+G
Sbjct: 224 AKAGHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIG 283
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVV-IQIPMTLLGVLLMDKSGRRP 335
V LMV QQF G+N + +Q+P+T+LG +L+DKSGRRP
Sbjct: 284 VSLMVFQQFVGINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRP 343
Query: 336 LLLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMS 395
L+++S SFL + ++ P LA+ GVL+Y +FS+GMG +PWVIMS
Sbjct: 344 LIMISAGGIFLGCILTGTSFLLKGQSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMS 403
Query: 396 EVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLV 455
E+FPIN+KG AGSLV LV+W G+W +S+TFNFLM WSS GTF+ +SA + T++FVAK+V
Sbjct: 404 EIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAKMV 463
Query: 456 PETKGRTLEEIQA 468
PETKG+TLEEIQA
Sbjct: 464 PETKGKTLEEIQA 476
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 211/434 (48%), Positives = 291/434 (67%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V+LSTF+AVCGS+ FG ++GY+S A+ GI DL LS+A++S F S+ T+GA IGA+ SGK
Sbjct: 35 VILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGK 94
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+A +GRR TM SD++CIIGW I F+K WL+ GR+ G G+GL+SYVVPVYIAEI+
Sbjct: 95 MAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEIS 154
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG FT +QL+ G++M Y G FLNWRILAL+G +PC +Q+IGL F+PESPRWL
Sbjct: 155 PKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESPRWL 214
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G E E +L RLRG T+ +E S+ +LFQRKY ++L+VG
Sbjct: 215 AKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVG 274
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM++QQF G + + + IP ++GV+L+DK GRRPL
Sbjct: 275 IGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTLLGLFMIPKAMIGVILVDKWGRRPL 334
Query: 337 LLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
LL S +F Q +Q + TP + V +Y G++++G+GG+PWVIMSE
Sbjct: 335 LLTSVSGMCITSMLIGVAFTLQKMQLLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSE 394
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
+FP+N+K +AGS+VTLVSW S I+++ FNFL++WS+ GTF+ F A+ L +LF+ LVP
Sbjct: 395 IFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFGAVGGLALLFIWLLVP 454
Query: 457 ETKGRTLEEIQASM 470
ETKG +LEEIQAS+
Sbjct: 455 ETKGLSLEEIQASL 468
|
|
| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 218/435 (50%), Positives = 282/435 (64%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V LST +AVCGSY FG+ +GYS+P Q GI +L LS +++S+FGSIL +GA++GAI SGK
Sbjct: 35 VYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGK 94
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
I+D+IGR+G M S ++ IGW+II +K LD GR L GYG G LS+VVPV+IAEI+
Sbjct: 95 ISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEIS 154
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
P+ LRG T++QL I IG++ +LIGA +NWR LAL G PC+V G FIPESPRWL
Sbjct: 155 PRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWL 214
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
G+ + E ALQ+LRG Y +L L + +++L +K +IVG
Sbjct: 215 EMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVG 274
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGV-LLMDKSGRRP 335
VGLM QQF G+N + Q+ +T LG LL+D+ GRRP
Sbjct: 275 VGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVVLTALGATLLIDRLGRRP 334
Query: 336 LLLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMS 395
LL+ S SFL + + P LA+ GVLVY GSFS+GMG IPWVIMS
Sbjct: 335 LLMASAVGMLIGCLLIGNSFLLKAHGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMS 394
Query: 396 EVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLV 455
E+FPIN+KG+AG LVT+V+WL SW++SFTFNFLM WS GTF+ + +C L ++F+AKLV
Sbjct: 395 EIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCVLAIIFIAKLV 454
Query: 456 PETKGRTLEEIQASM 470
PETKGRTLEEIQA M
Sbjct: 455 PETKGRTLEEIQAMM 469
|
|
| TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 198/434 (45%), Positives = 288/434 (66%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
++ +TF A+CG++ +G+A G++SPAQ+GI L LS+AE+S FG++LTIG ++GA MSGK
Sbjct: 53 LLFTTFTALCGTFSYGTAAGFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGAAMSGK 112
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+AD GRRG +G S+ C+ GW++I FS+A W LD+GRL +G G+ SYVVPVYI EI
Sbjct: 113 LADVFGRRGALGVSNSFCMAGWLMIAFSQATWSLDIGRLFLGVAAGVASYVVPVYIVEIA 172
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK +RG F+ ++ L++C V++TYL+G+ ++W+ LALI T+PC+ + +GL FIPESPRWL
Sbjct: 173 PKKVRGTFSAINSLVMCASVAVTYLLGSVISWQKLALISTVPCVFEFVGLFFIPESPRWL 232
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
++ G+ ESE +LQRLRG Y + L+ E G +LF +Y+ + VG
Sbjct: 233 SRNGRVKESEVSLQRLRGNNTDITKEAAEIKKYMDNLQEFKEDGFFDLFNPRYSRVVTVG 292
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GL+VLQQ GG++ V+Q ++LG++++DK GRR L
Sbjct: 293 IGLLVLQQLGGLSGYTFYLSSIFKKSGFPNNVGVMMASVVQSVTSVLGIVIVDKYGRRSL 352
Query: 337 LLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
L V+ SFLFQ TP +GVLV+ S ++G+GGIPWV++SE
Sbjct: 353 LTVATIMMCLGSLITGLSFLFQSYGLLEHYTPISTFMGVLVFLTSITIGIGGIPWVMISE 412
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
+ PIN+KGSAG+L L SW +W +S+TFNFL +WSS+G FF ++ I + +LFV K+VP
Sbjct: 413 MTPINIKGSAGTLCNLTSWSSNWFVSYTFNFLFQWSSSGVFFIYTMISGVGILFVMKMVP 472
Query: 457 ETKGRTLEEIQASM 470
ET+GR+LEEIQA++
Sbjct: 473 ETRGRSLEEIQAAI 486
|
|
| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 203/435 (46%), Positives = 283/435 (65%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V LSTFVAV GS+ G +G+SS AQ+GIT DL LSVAEYS+FGSILT+G +IGA+ SGK
Sbjct: 58 VFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGK 117
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+AD +GR+ TM F + CI GW+ + ++ A WLD GRLL+G G+G+ SYV+PVYIAEI
Sbjct: 118 VADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIA 177
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG F +QLM G+S+ ++IG F+ WR+L ++G +PC+ + L FIPESPRWL
Sbjct: 178 PKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWL 237
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G+ E ++LQRLRG + E E + ELFQR+YA+ LI+G
Sbjct: 238 AKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIG 297
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
VGLM LQQ G + + I +P +L +L+DK GRR L
Sbjct: 298 VGLMFLQQLCGSSGVTYYASSLFNKGGFPSAIGTSVIATIMVPKAMLATVLVDKMGRRTL 357
Query: 337 LLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
L+ S S+ FQ + TP +GVL + SF++GMGG+PW+IM+E
Sbjct: 358 LMASCSAMGLSALLLSVSYGFQSFGILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAE 417
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
+FP+N+K SAG+LVT+ +WL WII++TFNF+++W+++G F FS + + +++F+ LVP
Sbjct: 418 IFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVFIYFLVP 477
Query: 457 ETKGRTLEEIQASMN 471
ETKGR+LEEIQA +N
Sbjct: 478 ETKGRSLEEIQALLN 492
|
|
| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 206/434 (47%), Positives = 283/434 (65%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V+LSTFVAVCGS+ FG A GY+S A++G+ DL LS+A++S FGS T+GA IGA+ G
Sbjct: 31 VILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGN 90
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+A IGRRGTM SD +CI GW+ I F+K L+ GR++ G G GL SYVVPVYIAEIT
Sbjct: 91 LAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEIT 150
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG FT +QL+ G++M Y G F+ WR LAL+G +PC +Q+IGL F+PESPRWL
Sbjct: 151 PKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWL 210
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G E E +L RLRG T+ +E S+ +LFQRKY ++L+VG
Sbjct: 211 AKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVG 270
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM++QQF G + + IP ++G++L+DK GRRPL
Sbjct: 271 IGLMLIQQFSGSAAVISYASTIFRKAGFSVAIGTTMLGIFVIPKAMIGLILVDKWGRRPL 330
Query: 337 LLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
L+ S +F Q +Q + TP L+ + V++Y ++++G+GG+PWVIMSE
Sbjct: 331 LMTSAFGMSMTCMLLGVAFTLQKMQLLSELTPILSFICVMMYIATYAIGLGGLPWVIMSE 390
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
+FPIN+K +AGS+VTLVS+ S I+++ FNFL +WS+ GTFF F+ I +LF+ LVP
Sbjct: 391 IFPINIKVTAGSIVTLVSFSSSSIVTYAFNFLFEWSTQGTFFIFAGIGGAALLFIWLLVP 450
Query: 457 ETKGRTLEEIQASM 470
ETKG +LEEIQ S+
Sbjct: 451 ETKGLSLEEIQVSL 464
|
|
| TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
Identities = 197/434 (45%), Positives = 279/434 (64%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V+LSTFVAVC ++ +G A GY+S A++ I +L LS+A++S FGS L +G +GA+ SG+
Sbjct: 30 VILSTFVAVCSAFSYGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVGALFSGQ 89
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+A +GRR T+ D C+ GW+ I F+K +WLDLGR+ +G G+GL+SYVVPVYIAEIT
Sbjct: 90 LAVILGRRRTLWACDFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEIT 149
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG FT +QL+ GVS+ Y G +NWR++A+IG IPC++Q IG+ FIPESPRWL
Sbjct: 150 PKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIPESPRWL 209
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK E E++L RLRG T+ LE S+ ++FQ+KY +L+VG
Sbjct: 210 AKIRLSKEVESSLHRLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKYRRTLVVG 269
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM++QQ G + V IP L+G++L+D+ GRRPL
Sbjct: 270 IGLMLIQQLSGASGITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVGLILVDRWGRRPL 329
Query: 337 LLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
LL S SF Q + + P V +LVY G F+ G+GG+PWVIMSE
Sbjct: 330 LLASAVGMSIGSLLIGVSFTLQQMNVLPELIPIFVFVNILVYFGCFAFGIGGLPWVIMSE 389
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
+FPIN+K SAG++V L SW W +S+ FNF+ +WS+ GTF+ F+A+ ++ +F+ LVP
Sbjct: 390 IFPINIKVSAGTIVALTSWTSGWFVSYAFNFMFEWSAQGTFYIFAAVGGMSFIFIWMLVP 449
Query: 457 ETKGRTLEEIQASM 470
ETKG++LEE+QAS+
Sbjct: 450 ETKGQSLEELQASL 463
|
|
| TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 196/434 (45%), Positives = 278/434 (64%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V+LSTFVAVC S+ +G A GY+S A++ I +L LS+A++S FGS L +G +GA+ SG+
Sbjct: 21 VILSTFVAVCSSFSYGCANGYTSGAETAIMKELDLSMAQFSAFGSFLNLGGAVGALFSGQ 80
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+A +GRR T+ D+ CI GW+ I F+K WLDLGR+ +G G+GL SYVVPVYIAEIT
Sbjct: 81 LAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLGRISLGIGVGLTSYVVPVYIAEIT 140
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG F+ L+ G+S+ Y G +NWR+LA+IG +PC + +IG+ FIPESPRWL
Sbjct: 141 PKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAVIGALPCFIPVIGIYFIPESPRWL 200
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G E E +L RLRG T+ LE S+ ++FQ+KY +L+VG
Sbjct: 201 AKIGSVKEVENSLHRLRGKDADVSDEAAEIQVMTKMLEEDSKSSFCDMFQKKYRRTLVVG 260
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM++QQ G + V IP L+G++L+D+ GRRPL
Sbjct: 261 IGLMLIQQLSGASGITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVGLILVDRWGRRPL 320
Query: 337 LLVSXXXXXXXXXXXXXSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396
LL S SF Q++ + + P + +LVY G F++G+GG+PW+IMSE
Sbjct: 321 LLASAVGMSIGSLLIGVSFTLQEMNLFPEFIPVFVFINILVYFGFFAIGIGGLPWIIMSE 380
Query: 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456
+FPIN+K SAGS+V L SW W +S+ FNF+ +WS+ GTF+ F+ + L++LF+ LVP
Sbjct: 381 IFPINIKVSAGSIVALTSWTTGWFVSYGFNFMFEWSAQGTFYIFAMVGGLSLLFIWMLVP 440
Query: 457 ETKGRTLEEIQASM 470
ETKG++LEE+QAS+
Sbjct: 441 ETKGQSLEELQASL 454
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8MKK4 | TRE12_DROME | No assigned EC number | 0.3175 | 0.9177 | 0.8913 | yes | no |
| Q3ECP7 | ERDL5_ARATH | No assigned EC number | 0.7331 | 0.9409 | 0.9489 | yes | no |
| Q9JIF3 | GTR8_MOUSE | No assigned EC number | 0.3413 | 0.8966 | 0.8909 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3264 | 0.8902 | 0.9234 | yes | no |
| Q9UGQ3 | GTR6_HUMAN | No assigned EC number | 0.3179 | 0.9641 | 0.9013 | yes | no |
| Q9JJZ1 | GTR8_RAT | No assigned EC number | 0.3354 | 0.9198 | 0.9121 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.XIII.1134.1 | hypothetical protein (437 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 474 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-90 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-75 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 6e-59 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-28 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 8e-17 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-14 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-12 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 1e-11 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 3e-09 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-08 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 1e-07 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-06 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 1e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-05 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 6e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 1e-04 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 1e-04 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-04 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-04 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 0.002 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 281 bits (721), Expect = 4e-90
Identities = 149/449 (33%), Positives = 239/449 (53%), Gaps = 24/449 (5%)
Query: 41 TFVAVCGSYVFGSAIGYSSPAQSGI-----------TNDLGLSVAEYSLFGSILTIGAMI 89
VA G ++FG G + I S L SI ++G +I
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 90 GAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA--WWLDLGRLLVGYGMGLLSYV 147
G++ +GK+ D GR+ ++ +++ +IG ++ F+K + L +GR++VG G+G +S +
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121
Query: 148 VPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN-------WRILALIGTIPCL 200
VP+YI+EI PK LRG +++QL I G+ + +IG LN WRI + +P +
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 201 VQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGG 260
+ LIGL F+PESPRWL GK E+ A L +LRG E E ++E
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241
Query: 261 ILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGM-IAMVVIQIP 319
+ + L++GV L + QQ G+N I +Y+ +IF + G S S+ + I + V+
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301
Query: 320 MTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYT 379
T + + L+D+ GRRPLLL+ AAG + L+ ++ L + +A+V +L++
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG---IVAIVFILLFI 358
Query: 380 GSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFA 439
F+LG G +PWVI+SE+FP+ ++ A ++ T +WL +++I F F + F
Sbjct: 359 AFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLV 418
Query: 440 FSAICSLTVLFVAKLVPETKGRTLEEIQA 468
F+ + L +LFV VPETKGRTLEEI
Sbjct: 419 FAGLLVLFILFVFFFVPETKGRTLEEIDE 447
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 2e-75
Identities = 139/422 (32%), Positives = 225/422 (53%), Gaps = 20/422 (4%)
Query: 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123
N S + + L SI +G IGA+ +G ++D GR+ ++ ++ +IG +++
Sbjct: 61 TSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL 120
Query: 124 SKAAW---WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY 180
+ A L +GR+L+G G+G+ S +VP+Y++EI PK LRG T+++QL I G+ + Y
Sbjct: 121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180
Query: 181 LIGAF-------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLR 233
G+ L WRI + IP + +GL F+PESPRWL G+ E+ +L RLR
Sbjct: 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR 240
Query: 234 GADADISEEAAE-----IREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288
G + E E I+ E G L R+ L +GV L QQF G+
Sbjct: 241 GTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGI 300
Query: 289 NGIAFYASSIFISAGFSGSIGM---IAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTC 345
N I +Y+ +IF +AG S I + + T + + L+D+ GRRPLLL+ AAG
Sbjct: 301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMA 360
Query: 346 LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGS 405
+ + + K++ +A+V +L++ F++G G +PWVI+SE+FP++++
Sbjct: 361 ICLFVLGILGASFVTGS-SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK 419
Query: 406 AGSLVTLVSWLGSWIISFTFNFLMKWSSTG-TFFAFSAICSLTVLFVAKLVPETKGRTLE 464
S+ +WL ++I+ F F +++ G F F + L ++FV +PETKGRTLE
Sbjct: 420 GISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479
Query: 465 EI 466
EI
Sbjct: 480 EI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 6e-59
Identities = 122/421 (28%), Positives = 205/421 (48%), Gaps = 53/421 (12%)
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV------IIVFSKA------AWWLDL 132
IG +IG + G ++ GRR ++ + ++ I + S +
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125
Query: 133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------- 185
R++ G G+GL S + P+YIAEI P ++RG + +Q I G + Y + F
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA 185
Query: 186 -----LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRG---ADA 237
WR + IP L+ L+ L F+PE+PR+L GK ++E L+++ G A
Sbjct: 186 SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ 245
Query: 238 DISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASS 297
+ E + +T +L G+ +++GV L V QQF G+N + +YA
Sbjct: 246 ALQEIKHSLDHGRKTGGKLLMFGVG---------VIVIGVMLSVFQQFVGINVVLYYAPE 296
Query: 298 IFISAGFSGSIGM---IAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354
IF + G S I + I + VI + T+L ++ +DK GR+PL ++ A G +G +
Sbjct: 297 IFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 356
Query: 355 FLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVS 414
F Q A +AL+ +L Y +F++ G + WV++SE+FP ++G A ++
Sbjct: 357 FYTQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQ 409
Query: 415 WLGSWIISFTFNFLMKWSSTGTFFA-------FSAICSLTVLFVAKLVPETKGRTLEEIQ 467
W+ ++ +S+TF + K S F + + L LF+ K VPETKG+TLEE++
Sbjct: 410 WIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469
Query: 468 A 468
A
Sbjct: 470 A 470
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-28
Identities = 93/403 (23%), Positives = 169/403 (41%), Gaps = 44/403 (10%)
Query: 78 LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137
L S +G ++G+ + G ++D GR+ + S +V + V+ FS + RLLV
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILA 192
G G+G + V E PK R +I + S+ ++ + +WR L
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIV----GTLIQVFFSLGLVLLPLVAYFIPDWRWLQ 246
Query: 193 LIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGAD-ADISEEAAEIREYTE 251
L ++P + + F+PESPRWL G+ E+ LQR+ + + E + +
Sbjct: 247 LAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKD 306
Query: 252 TLERLSEGGILELFQ----RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS 307
+ L+LF+ RK +L + + ++Y + + G+
Sbjct: 307 LSSSKKQYSFLDLFRTPNLRK--TTLCLMMLWF-------TTAFSYYGLVLDLG-NLGGN 356
Query: 308 IGMIA--MVVIQIPMTLLGVLLMDKSGRRP---LLLVSAAGTCLGCLLAALSFLFQDLQQ 362
I + ++++P L+ +LL+D+ GRR L+ A L L F+ DL
Sbjct: 357 IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALL-----LLLFVPVDLYF 411
Query: 363 WIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS 422
A LA++G T +F + + +E++P ++ + + ++ +GS IIS
Sbjct: 412 LRTA---LAVLGKFGITSAFQMVY-----LYTAELYPTVVRNLGVGVCSTMARVGS-IIS 462
Query: 423 FTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEE 465
+L + F + L + +PETKG L E
Sbjct: 463 PFLVYLGEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 8e-17
Identities = 81/365 (22%), Positives = 144/365 (39%), Gaps = 36/365 (9%)
Query: 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113
A+G+++PA I+ + GL + S IG GA+ G +AD IGRR + +S ++
Sbjct: 35 AMGFAAPA---ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILL 91
Query: 114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC 173
+ ++ + L + R L G G+G L + ++E PK RG +
Sbjct: 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYP 151
Query: 174 IGVSMTYLIGAFL----NWRILALIGTI-PCLVQLIGLCFIPESPRWL----AKTGKGIE 224
IG ++ + +L WR L +G I P L+ L+ + F+PES +L +T + I
Sbjct: 152 IGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIV 211
Query: 225 SEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284
+ A Q A + + E+ A LFQ K A ++ L +
Sbjct: 212 NAIAPQMQAEAQSALPEQKATQGTKRSVF--------KALFQGKTARITVLLWLLYFMLL 263
Query: 285 FGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVL---LMDKSGRRPLLLVSA 341
GV + + + + GFS S+ + + ++ L D+ G R L+
Sbjct: 264 V-GVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL 322
Query: 342 AGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPIN 401
G + L L+G + G F G + +M+ +P
Sbjct: 323 LG---AVFAVLVGSTLFS-------PTLLLLLGAIA--GFFVNGGQSGLYALMALFYPTA 370
Query: 402 MKGSA 406
++ +
Sbjct: 371 IRATG 375
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 4/174 (2%)
Query: 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY 100
+ G ++ G G SPA + DLGLS ++ L S ++G +G++++G ++D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 101 IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL 160
GRR + ++ +G +++ F+ + W L +GR L+G G G L IAE P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 161 RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIP 210
RG + +G + L+G L WR L LI I L+ + L F+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 85/387 (21%), Positives = 152/387 (39%), Gaps = 50/387 (12%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
+ L+ F+A G + G A+ + DLG+S E L + ++G + ++G+
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLY------LAEDLGISPTEIGLLLTAFSLGYALAQPLAGR 54
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
++D GRR + ++ +G ++++F+ + W L + R+L G G G L IA+
Sbjct: 55 LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV-QLIGLCFIPE 211
P RG + +G ++ L+G L WR LI I L+ ++ +P
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPR 174
Query: 212 SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAH 271
P + E+ A L +L R
Sbjct: 175 PPPESKRPKPAEEAPAPLV-----------------------------PAWKLLLRDPVL 205
Query: 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS 331
L++ + L F + + Y + +SA +G + +A ++ I LLG L D+
Sbjct: 206 WLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGR-LSDRL 264
Query: 332 GRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPW 391
GRR LL++ L L AL L + + LV +L+ L +
Sbjct: 265 GRRRRLLLALLLLILAALGLALLSLTE--------SSLWLLVALLLLGFGAGLVFPAL-N 315
Query: 392 VIMSEVFPINMKGSAGSLVTLVSWLGS 418
++S++ P +G+A L LG
Sbjct: 316 ALVSDLAPKEERGTASGLYNTAGSLGG 342
|
Length = 346 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 1e-11
Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 38/233 (16%)
Query: 25 ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
E G G VL + G VF +G+ P+ DL + + + G I+
Sbjct: 158 ECGHGRFQWALFFVLGLALMADGVEVF--VVGFVLPSAE---KDLCIPDSGKGMLGLIVY 212
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
+G M+GA G +AD +GR+ + V F + + RLL G+G+G
Sbjct: 213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGA 272
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA-------------------- 184
+V Y AE + RG H +C M ++IG
Sbjct: 273 IPIVFSYFAEFLAQEKRGE----HLSWLC----MFWMIGGIYAAAMAWAIIPHYGWSFQM 324
Query: 185 -----FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRL 232
F +WR+ ++ PC+ + L F+PESPR+ + GK E+ L+ +
Sbjct: 325 GSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 100/451 (22%), Positives = 158/451 (35%), Gaps = 87/451 (19%)
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW--------WLDLGRLL 136
IG + G + G +AD +GR+ G I+ II V S L R
Sbjct: 67 IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--PGSSPKSVMATLCFWRFW 124
Query: 137 VGYGMGLLSYVVPVYI-AEITPKNLRGGFTTVHQLM-----ICIGVSMTYLIGAFLN--- 187
+G G+G Y + I +E K RG M + + ++ F +
Sbjct: 125 LGVGIGG-DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLE 183
Query: 188 -------------------WRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAA 228
WRIL G +P L+ L IPE+PR+ A K +E A+
Sbjct: 184 AAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAAS 243
Query: 229 LQR--LRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286
L+ +E + E + F+ ++ L+ G L
Sbjct: 244 DMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLD-- 301
Query: 287 GVNGIAFYASSIFISAGFSGSIGMIA-------------MVVIQIPMTLLG--------V 325
IAFY ++ S +IG V + + L G V
Sbjct: 302 ----IAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV 356
Query: 326 LLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLG 385
L+D GR+P+ L L L L F + + FLA+ + + +F G
Sbjct: 357 FLVDIIGRKPIQL--MGFFILTVLFFVLGFAYNH----LSTHGFLAIYVLAQFFANF--G 408
Query: 386 MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM------KWSSTGTFFA 439
+++ EVFP + +A + G+ I F F +L K TG +
Sbjct: 409 PNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMG 468
Query: 440 FS----AICSLTVLFVAKLVPETKGRTLEEI 466
A+ + L+PETKG++LEE+
Sbjct: 469 HVLEIFALFMFLGILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 75/396 (18%), Positives = 145/396 (36%), Gaps = 89/396 (22%)
Query: 89 IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV----FSKAAWW----LDLGRLLVGYG 140
+GAI+ G D IGR+ T+ + ++ IG ++I ++ W L L RL+ G+
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN------------W 188
+G +Y+AE P RG + + Q+ +G+ + L L+ W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 189 RILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE 248
RI L+ + L+ L + E+P + K
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH-------------------------- 203
Query: 249 YTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI------SA 302
+ G I E K+ ++G+GL++ FY + ++ +
Sbjct: 204 ------KKKRGPIAETL-TKHRKPFLLGLGLVIATT------TTFYLITTYLPTYLTQTL 250
Query: 303 GFSGSIGMIAMVVIQIPMTL---LGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQD 359
G S + ++ +++ I + L L D+ GRRP+L+ L A L+
Sbjct: 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI------IFTVLAALLAVPL-- 302
Query: 360 LQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLV--------- 410
L + + F +++ G + E+FP ++ + SL
Sbjct: 303 LMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG 362
Query: 411 TLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSL 446
++ + +++ T W + G + A A+ L
Sbjct: 363 GFAPYIAAALVAMT----GDWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 89/416 (21%), Positives = 153/416 (36%), Gaps = 64/416 (15%)
Query: 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW 118
S A + DLGLS A+Y S + G ++G G + D G R T+ V I+ W
Sbjct: 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLA----VFIVIW 69
Query: 119 VIIV----FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMI-- 172
+ F+ A L + R+L+G + + +A P + R ++
Sbjct: 70 GVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL 129
Query: 173 --CIGVSMTYLIGAFLNWRILALIGTIPCLV-QLIGLCFI---PESPRWLAKTGKGIESE 226
IG + I +W+ +I + ++ ++ L FI P+ +WL + K I
Sbjct: 130 GGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVG 189
Query: 227 AALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK-------YAHSLIVGVGL 279
L E T ++ E L R+ I
Sbjct: 190 GLL-----------AEQQGKGPSTPKKYQIKEL----LKDRRVWGLALGQFLVNIGLGFF 234
Query: 280 MV-----LQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR 334
+ L Q G++ + AGF + + +V I M L G L R
Sbjct: 235 LTWFPTYLVQERGLS---------ILEAGF---MASLPGIVGFIGMILGGRLSDLLLRRG 282
Query: 335 PLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIM 394
L+ + + L+ +L + P+ AL V + G F LG G I W ++
Sbjct: 283 KSLVFARKTAIIAGLVLSLLMFATNYV----NIPYAALALVAL--GFFGLGAGAIGWALI 336
Query: 395 SEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTF-FAFSAICSLTVL 449
S+ P N+ G G L+ + LG + + ++TG+F A + +L ++
Sbjct: 337 SDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIA--ATTGSFAGALMVVAALALI 390
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 29/191 (15%)
Query: 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
A + + GL VA+ S +G + GA++ G++AD IGR+ + S V + G
Sbjct: 37 AAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS--VALFG--- 91
Query: 121 IVFSKA---AWWLD---LGRLLVGYGMGLLSYVVPVYIA---EITPKNLRGGFTTVHQLM 171
+FS A AW + RLL G G+G +P IA E LRG T LM
Sbjct: 92 -LFSLATAQAWDFPSLLVARLLTGVGLG---GALPNLIALTSEAVGPRLRG---TAVSLM 144
Query: 172 IC---IGVSMTYLIGAFL----NWRILALIGTI-PCLVQLIGLCFIPESPRWLAKTGKGI 223
C G ++ +IG WR + +G + P L+ + + ++PES + G G
Sbjct: 145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK 204
Query: 224 ESEAALQRLRG 234
+ L+ L G
Sbjct: 205 QRAPVLRALFG 215
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 43/188 (22%), Positives = 65/188 (34%), Gaps = 15/188 (7%)
Query: 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG----SIGMIAMVVIQIPMTLLGVLLM 328
L++ + L G G+ Y + + + I LLG LL
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 329 DKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGG 388
D+ GRR LLL +G LLAAL L L + L+ +F +
Sbjct: 236 DRLGRRRLLL------LIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALL-- 287
Query: 389 IPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTV 448
+ SE+ P +G+A L LG + L+ G F A +L
Sbjct: 288 ---TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 449 LFVAKLVP 456
+ L+P
Sbjct: 345 ALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Query: 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
I DLGL+ E + + IG G + G +AD GR+ M +S + +G + +
Sbjct: 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103
Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIG-VSMTYLIG 183
L L R +VG GM Y E PK+L+ + IG + Y +
Sbjct: 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163
Query: 184 AF---LNWRILALIGTIPCLVQLIGLCFIPESPRWLAK--TGKGIESEAA 228
+F WR +G +P L+ + PES W +GKG S++A
Sbjct: 164 SFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSA 213
|
Length = 426 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
+G +I + +SG + D GR+ + + ++ + S L + R L G+G
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL 200
IA+I P RG + I +G + +G L WR L I L
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 201 VQLIGLCFIPE 211
I L F+
Sbjct: 129 AAFILLAFLLP 139
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 4/172 (2%)
Query: 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
+ + GL+ + + S I G ++ G + D GRR M S ++ +G + F+
Sbjct: 46 VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA 105
Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184
W L + RL++G GM Y+ E PK+LR + IG + + +
Sbjct: 106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165
Query: 185 FL----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRL 232
+ WR L IG +P + L +PE+ W K + L
Sbjct: 166 LVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSG 95
++L S+ + + Y + LGLS AE L S+ +G ++GA++ G
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLY---LQEVLGLSAAEAGLLLSLFGLGGILGALLGG 232
Query: 96 KIADYIGRR-GTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAE 154
++D +GRR + ++ +G +++ + + L + LL+G+G+G + +E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292
Query: 155 ITPKNLRGG----FTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIP 210
+ P RG F T L +G + L+ + + LI L+ + L +P
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 16/187 (8%)
Query: 30 SASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMI 89
A+A + L+ ++ G+ I DLG+S + +G +
Sbjct: 4 PATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVAL 63
Query: 90 GAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVP 149
GA + + + RR + + I+ ++ + + L L R L G G+ +
Sbjct: 64 GAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAA 123
Query: 150 VYIAEITPKNLRG--------GFTTVHQLMICIGVSMTYLIGAFLNWR----ILALIGTI 197
A + P RG G T L +GV + +G WR +A++ +
Sbjct: 124 ALAARLVPPGKRGRALALVFTGLT----LATVLGVPLGTFLGQLFGWRATFLAIAVLALL 179
Query: 198 PCLVQLI 204
L+
Sbjct: 180 ALLLLWK 186
|
Length = 394 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 84/412 (20%), Positives = 146/412 (35%), Gaps = 51/412 (12%)
Query: 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
A + D GLS + + GS +I + + G ++D R M F I+ I ++
Sbjct: 51 AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL 110
Query: 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFT----TVHQL--MICI 174
FS + + + +L G+ G+ I + RG + T H + +
Sbjct: 111 FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAP 170
Query: 175 GVSMTYLIGAFLNWRILALI-GTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLR 233
V++ WR G I +V LI L + + P+ L +
Sbjct: 171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ-----------SEGLPPIE 219
Query: 234 GADADISEEAAEIREYTETLERLSEGGILE--LFQRKYAHSLIVGVGLMVLQQFGGVNGI 291
+ + EI E + E L+ I + + K L + + + ++G +
Sbjct: 220 ----EYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWG 275
Query: 292 AFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDK--SGRR-PLLLVSAAGTC 345
Y S + GFS + + V +P TLL L DK GRR P+ L+
Sbjct: 276 PLYLSEV---KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT 332
Query: 346 LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGS 405
L +L + + A L ++G L+Y +G+ E P G+
Sbjct: 333 AS---LVLYWLAPNGSYLLDAI-LLFIIGFLIYGPQMLIGLAAA------EFVPKKAAGT 382
Query: 406 AGSLVTLVSWL-----GSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVA 452
A V L ++L + + + W G F S L +L +
Sbjct: 383 ATGFVGLFAYLIGAALAGLPLGYIAD---TWGWDGGFIVLSIAALLAILLLL 431
|
Length = 448 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSG 95
++L + V + Y T LG + +S+ I TI A++GA +
Sbjct: 226 ILLLLYLLNALAMAVRNGLLLYY------FTYVLG-NAGLFSVLLLIGTIAAILGAPLWP 278
Query: 96 KIADYIGRRGTMGFSDIVCIIGWVIIVF--SKAAWWLDLGRLLVGYGMGLLSYVVPVYIA 153
+A G++ T ++ IG V++ F + W + +L G G+GL + + +A
Sbjct: 279 WLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLA 338
Query: 154 EI 155
++
Sbjct: 339 DV 340
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 78/387 (20%), Positives = 138/387 (35%), Gaps = 34/387 (8%)
Query: 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
A + ++GLS + L S +I I + G ++D R + I+C I +
Sbjct: 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76
Query: 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGF----TTVHQLMICIGV 176
FS + W + L G G+ + + ++ RG + H + +
Sbjct: 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136
Query: 177 SMTYLIGAFLN-WR-ILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRG 234
+ A L W + + G I +V LI + +SP+ G+ A
Sbjct: 137 PLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ-----SCGL-PPAEEMPNEE 190
Query: 235 ADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY 294
D D ++ E+ + L+ + L + + + V + V+ + G ++ Y
Sbjct: 191 PDGDAEKKEEELTKKQIFLQYV-------LLNKVLWYISLGYVFVYVV-RTGILDWSPLY 242
Query: 295 ASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDK---SGRRPLLLVSAAGTCLGCLLA 351
+ + S + + TLL L DK R PL + A + L+
Sbjct: 243 LTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY 302
Query: 352 ALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT 411
L+ L I L +G LVY G + VI SE+ P G+A V
Sbjct: 303 WLNPAANPLMDLI----CLFALGFLVY------GPQMLIGVIASELAPKKAAGTAAGFVG 352
Query: 412 LVSWLGSWIISFTFNFLMK-WSSTGTF 437
++LG + +L + G F
Sbjct: 353 FFAYLGGILAGLPLGYLADGFGWAGAF 379
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 30/140 (21%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI 101
+ +FG A LGLS L + + IG ++ G+++D +
Sbjct: 205 LWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL 264
Query: 102 GRRGTMGFSDIVCII---GWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPK 158
GRR + + ++ I+ G ++ ++++ WL + LL+G+G GL+ + ++++ PK
Sbjct: 265 GRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPK 324
Query: 159 NLRGGFTTVHQLMICIGVSM 178
RG + ++ +G ++
Sbjct: 325 EERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 26/146 (17%)
Query: 89 IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD------LGRLLVGYGMG 142
GA+M G D GRR M + I+ + + + + RL++G GMG
Sbjct: 62 FGALMFGLWGDRYGRRLPM----VTSIVLFSAGTLACG--FAPGYITMFIARLVIGIGMG 115
Query: 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF----------LNWRILA 192
Y+ E PK+LR + + G ++ ++ A WR L
Sbjct: 116 GEYGSSAAYVIESWPKHLRNKASGLLIS----GYAVGAVVAAQVYSLVVPVWGDGWRALF 171
Query: 193 LIGTIPCLVQLIGLCFIPESPRWLAK 218
I +P + L IPE+ W K
Sbjct: 172 FISILPIIFALWLRKNIPEAEDWKEK 197
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 69/331 (20%), Positives = 125/331 (37%), Gaps = 59/331 (17%)
Query: 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
I DLGLS + L ++ + + A + ++A G ++ + ++ G +I
Sbjct: 38 IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG 97
Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT----- 179
L LG LL G G+ +++ ++P I PK + G T ++ + G ++
Sbjct: 98 -GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAV 155
Query: 180 YLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADI 239
L WR + L+ L+ WL Q LR A I
Sbjct: 156 PLAQHSGGWRGALGFWALLALLALLI---------WL------------PQALREQAASI 194
Query: 240 SEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF 299
+ + +R ++++ A + + M LQ I + +I
Sbjct: 195 ATKLVSVR---------------KVWRSPLAWQVTL---FMGLQSLLYYIVIGWLP-AIL 235
Query: 300 ISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSG-RRPLLLVSAAGTCLGCLLAALSF 355
I G S + M + Q+P LL LL +S +RPL++++ L L+ +
Sbjct: 236 IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA----LLLMLVGLVGL 291
Query: 356 LFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386
L Q I + L+G+ G+F L +
Sbjct: 292 LLAPGQLPI---LWALLLGLGQ-GGAFPLAL 318
|
Length = 395 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 474 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.98 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.96 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.86 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.85 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.85 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.81 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.8 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.74 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.73 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.71 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.7 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.62 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.62 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.58 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.58 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.55 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.54 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.52 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.52 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.51 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.51 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.5 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.47 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.47 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.45 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.43 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.43 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.42 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.41 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.41 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.38 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.38 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.37 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.37 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.36 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.36 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.35 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.35 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.34 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.32 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.32 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.32 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.32 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.31 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.31 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.3 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.29 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.29 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.28 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.28 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.28 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.26 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.26 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.25 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.25 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.24 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.24 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.24 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.22 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.22 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.22 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.21 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.21 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.21 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.2 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.2 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.2 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.2 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.2 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.2 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.19 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.19 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.18 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.18 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.18 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.18 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.18 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.18 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.17 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.17 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.16 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.16 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.14 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.13 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.13 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.12 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.11 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.11 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.11 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.09 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.09 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.08 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.08 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.06 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.05 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.05 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.05 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.04 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.04 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.04 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.04 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.03 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.03 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.01 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.0 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.98 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.95 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.94 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.92 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.9 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.87 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.87 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.86 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.85 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.84 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.84 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.83 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.8 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.77 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.74 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.73 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.73 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.71 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.7 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.67 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.66 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.62 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.61 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.6 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.56 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.52 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.5 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.49 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.43 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.42 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.41 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.37 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.36 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.35 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.35 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.3 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.27 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.26 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.21 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.17 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.12 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.08 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 98.02 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.96 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.68 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.62 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.48 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.47 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.27 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.2 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.1 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.06 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 97.04 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.67 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.65 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.41 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.36 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.36 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.22 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.05 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.85 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.57 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.7 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.91 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 93.04 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 90.7 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 89.87 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 88.78 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 88.5 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 88.17 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 87.93 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 87.89 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 87.18 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 86.19 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 85.94 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 85.88 | |
| PF04346 | 354 | EutH: Ethanolamine utilisation protein, EutH; Inte | 85.07 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 84.89 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 84.41 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 82.16 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 81.76 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.04 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=321.19 Aligned_cols=440 Identities=33% Similarity=0.567 Sum_probs=365.8
Q ss_pred CCchhHHHHHHHHHHHHHHhhccccccccccccccc--------cccC--CChhh----HHHHHHHHHHHHHHHHHHHHH
Q 011956 31 ASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGIT--------NDLG--LSVAE----YSLFGSILTIGAMIGAIMSGK 96 (474)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~g~~~s~~~l~~~~~~~~~G~ 96 (474)
++..++.........++.+-++++.+.+++..+.+. +.+| .++++ .+.+.+++.+|.++|+...|+
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~ 82 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGL 82 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777778889999998888755443 3344 34333 577899999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHH
Q 011956 97 IADYIGRRGTMGFSDIVCIIGWVIIVF---SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC 173 (474)
Q Consensus 97 l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 173 (474)
++||+|||..+.++.++..++.++..+ .+++.+++++|++.|+..|........++.|..|++.||....+.+.+..
T Consensus 83 la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~ 162 (485)
T KOG0569|consen 83 LADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVV 162 (485)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHH
Confidence 999999999999999998888877765 46889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc------hhhHHHHHhHHHHHHHHHHhhccCCChhHHHh-cCChhHHHHHHHHHhCCCcchHHHHHHH
Q 011956 174 IGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPESPRWLAK-TGKGIESEAALQRLRGADADISEEAAEI 246 (474)
Q Consensus 174 ~g~~~~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (474)
+|..++..++.-- .|++.+....+++++.++...++||+|||+.. |++.++|++.++..++...+..+.+...
T Consensus 163 ~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~ 242 (485)
T KOG0569|consen 163 IGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEML 242 (485)
T ss_pred HHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 9999997776322 79999999999999999999999999999988 8999999999999998875544444433
Q ss_pred HHHHHHH-hhccchhHHHHhhHh-hHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHH
Q 011956 247 REYTETL-ERLSEGGILELFQRK-YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMT 321 (474)
Q Consensus 247 ~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 321 (474)
++.++.+ ++.+..+++++++++ .++...+...+.....+.+.+.+.+|...++.+.|.+.. ......++..++..
T Consensus 243 ~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t 322 (485)
T KOG0569|consen 243 REIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLST 322 (485)
T ss_pred HHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333332 233667899999885 445566777778888899999999999999999988765 77888889999999
Q ss_pred HHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCC
Q 011956 322 LLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPIN 401 (474)
Q Consensus 322 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 401 (474)
+++.++.||.|||++++.+..++.+..+++........... ++..+..+...+.+...+..+..|+.+-+.+|++|++
T Consensus 323 ~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~ 400 (485)
T KOG0569|consen 323 LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS 400 (485)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc
Confidence 99999999999999999999999888888776654432211 1223344566777888888999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhhheeCcCCCCCCHHHHHhhcCC
Q 011956 402 MKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNP 472 (474)
Q Consensus 402 ~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (474)
.|+.+.++.....++..++-......+.+.-+...++.+.+.+.+..+..++.+||+|+|+..|+.++.++
T Consensus 401 ~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 401 ARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999545588888999999999999999999999998888776554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=344.78 Aligned_cols=415 Identities=20% Similarity=0.293 Sum_probs=314.0
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 011956 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (474)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 113 (474)
.+..|.+++++.++.+..+++...++.++|.+.++++++..+.+++.+++.++..++++++|+++||+|||+++++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 46677777888888888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-------
Q 011956 114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------- 186 (474)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l------- 186 (474)
+++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++.+++...++.+|.++++.++..+
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999988765321
Q ss_pred ----------hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchH---HHHH---HHHHHH
Q 011956 187 ----------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADIS---EEAA---EIREYT 250 (474)
Q Consensus 187 ----------~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~ 250 (474)
+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+.... .... ..+...
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 699999998888888888888899999999999999999999999887653211 1100 000000
Q ss_pred HH------Hhhcc-----------------chhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHc-----
Q 011956 251 ET------LERLS-----------------EGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA----- 302 (474)
Q Consensus 251 ~~------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 302 (474)
+. ++... ..+++++++.+..+..++... .++.....++.+..|+|.++...
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~-~wf~~~~~yygl~~w~P~~~~~~~~~~~ 480 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMG-VWFTLSFGYYGLSVWFPDMIKHLQADDY 480 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 013555665555544444433 34444445666666766553220
Q ss_pred -------------------------------------CC-----------------------------------------
Q 011956 303 -------------------------------------GF----------------------------------------- 304 (474)
Q Consensus 303 -------------------------------------~~----------------------------------------- 304 (474)
+.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 560 (742)
T TIGR01299 481 AALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTD 560 (742)
T ss_pred Hhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccc
Confidence 00
Q ss_pred -----------------------------c------chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHH
Q 011956 305 -----------------------------S------GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCL 349 (474)
Q Consensus 305 -----------------------------~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 349 (474)
+ ......+..++.+++.++.|+++||+|||+++..+.++.+++++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~l 640 (742)
T TIGR01299 561 FEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCF 640 (742)
T ss_pred hhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 0 01224455678899999999999999999999888888777777
Q ss_pred HHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 350 LAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
++.+. .+.. .++...++.+++..+..+..+.++.|.+|++.|++++|+.+....+|++++|++.+.+.
T Consensus 641 l~~~~-----------~s~~-~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 641 FLSFG-----------NSES-AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHH-----------ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66653 1222 22333333444444556677899999999999999999999999999999999999888
Q ss_pred hhhccchhHHHHHHHHHHHHhhheeCcCCCCCC
Q 011956 430 KWSSTGTFFAFSAICSLTVLFVAKLVPETKGRT 462 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (474)
+.....++.+.+++.++.++ +..++||++++.
T Consensus 709 ~~~~~~pf~i~a~~lll~~l-l~~~LPET~~~~ 740 (742)
T TIGR01299 709 GITKAAPILFASAALACGGL-LALKLPDTRGQV 740 (742)
T ss_pred HhhhHHHHHHHHHHHHHHHH-HHHhCCCCcccc
Confidence 75544455555555544444 444568887764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=331.02 Aligned_cols=427 Identities=20% Similarity=0.266 Sum_probs=302.6
Q ss_pred CCchhHHHHHHHHHHHHHHhhcccccccccccccccccc-----CCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchh
Q 011956 31 ASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDL-----GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG 105 (474)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~ 105 (474)
.+..+..+.++.++.++.+.++++.+..+...|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~ 87 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR 87 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 345567777888888999999999999898888776642 455667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 011956 106 TMGFSDIVCIIGWVIIVFSKA------AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT 179 (474)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 179 (474)
++.++.+++.++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|.+++
T Consensus 88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g 167 (502)
T TIGR00887 88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875 78999999999999999999999999999999999999999999999998888
Q ss_pred HHHhcc---------------------------chhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChh-HHHHHHHH
Q 011956 180 YLIGAF---------------------------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGI-ESEAALQR 231 (474)
Q Consensus 180 ~~l~~~---------------------------l~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~ 231 (474)
+.++.. .+||++|.+.+++.++..+..+++||+|+|+..+++.+ ++.+.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~ 247 (502)
T TIGR00887 168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA 247 (502)
T ss_pred HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence 876532 16999999888888888777888999999998887764 45555555
Q ss_pred HhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHh---hHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch-
Q 011956 232 LRGADADISEEAAEIREYTETLERLSEGGILELFQRK---YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS- 307 (474)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (474)
....+.+.+.++ .++..+ +++..+.+++++++++ ..++..+.....++.....++....|.|.+++..+.+..
T Consensus 248 ~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~ 324 (502)
T TIGR00887 248 VLQVKIEAEPDE--VEKAST-AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPA 324 (502)
T ss_pred HhccccccCccc--ccchhc-cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCc
Confidence 543221111100 000000 0111123577777542 222222222222222222223344455665555444321
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHH
Q 011956 308 --------------IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALV 373 (474)
Q Consensus 308 --------------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (474)
.......++.+++.++.++++||+|||+.+..+..+..+++.++...... ........
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~ 396 (502)
T TIGR00887 325 ATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH--------LSTHGFLA 396 (502)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh--------cchhHHHH
Confidence 02233445667788899999999999998877777766666555543210 01111111
Q ss_pred HHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------ccchhHHHHH
Q 011956 374 GVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS-----------STGTFFAFSA 442 (474)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~-----------~~~~~~~~~~ 442 (474)
...++...+..+..+..+.+..|.+|++.|+++.|+.+...+++++++|.+.+.+.+.. ....++++++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 476 (502)
T TIGR00887 397 IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFAL 476 (502)
T ss_pred HHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHH
Confidence 22222223344556777888999999999999999999999999999999999998732 1234566666
Q ss_pred HHHHHHHhhheeCcCCCCCCHHHHHhh
Q 011956 443 ICSLTVLFVAKLVPETKGRTLEEIQAS 469 (474)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
++++..+ .++++||+++++.+|.++|
T Consensus 477 ~~~~~~i-~~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 477 FMFLGIL-FTLLIPETKGKSLEELSGE 502 (502)
T ss_pred HHHHHHH-HheEeccCCCCCHHhhhCC
Confidence 6655544 4567799999988776553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=324.03 Aligned_cols=425 Identities=29% Similarity=0.531 Sum_probs=309.5
Q ss_pred hHHHHHHHHHHHHHHhhcccccccccccccccccc--------CCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhH
Q 011956 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDL--------GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGT 106 (474)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~ 106 (474)
+.....+.+..++.+.++++.+.+++..|.+++++ +.++.+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34555666777888999999999999988888877 8889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHH
Q 011956 107 MGFSDIVCIIGWVIIVFS------------KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI 174 (474)
Q Consensus 107 l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 174 (474)
++++.++++++.+.++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888763 23567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc------------chhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHH
Q 011956 175 GVSMTYLIGAF------------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEE 242 (474)
Q Consensus 175 g~~~~~~l~~~------------l~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (474)
|.++++.++.. .+||++|++.+++.++..+..+++||+|+++..+++.+++++..++....+... ..
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT-QA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH-HH
Confidence 99988776532 289999999888887776667789999999888888777776666654432111 11
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHH
Q 011956 243 AAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIP 319 (474)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 319 (474)
.++..+....+ + ...+..+. ..............+......+...+|.+.+.+..+.+.. ......++..++
T Consensus 247 ~~~~~~~~~~~-~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHG-R---KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHh-h---hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 11111110000 0 00011111 0111111122222233333344556677777766665433 555567788889
Q ss_pred HHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCC
Q 011956 320 MTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFP 399 (474)
Q Consensus 320 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 399 (474)
+.++.++++||++||+.+..+..+.+++.+.+....... ...........++..++.....|..+.+++|.+|
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 394 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 394 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCC
Confidence 999999999999999999888888887776665432110 1122233333344444444456777899999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHH------h-hhccchhHHHHHHHHHHHHhhheeCcCCCCCCHHHHHhhcCC
Q 011956 400 INMKGSAGSLVTLVSWLGSWIISFTFNFLM------K-WSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNP 472 (474)
Q Consensus 400 ~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (474)
+++|+++.|+.+...+++.++++.+.+.+. + .+....+.+.++++++..++.+++.+|+|+++.+|.+++.++
T Consensus 395 ~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 395 NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence 999999999999999999999988877655 2 344455666676767777777777899999888887776544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=315.65 Aligned_cols=432 Identities=33% Similarity=0.577 Sum_probs=315.4
Q ss_pred CchhHHHHHHHHHHHHHHhhccccccccccccccccccCCC--------hhhHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 011956 32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLS--------VAEYSLFGSILTIGAMIGAIMSGKIADYIGR 103 (474)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr 103 (474)
+..|+.+....++.++.+...++.....+..|.+.++++.+ ..+.+++.+++.++..++++++|+++||+||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr 100 (481)
T TIGR00879 21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGR 100 (481)
T ss_pred cccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence 34466666677777788888888988899999888888777 8999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHH
Q 011956 104 RGTMGFSDIVCIIGWVIIVFSK---AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY 180 (474)
Q Consensus 104 r~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 180 (474)
|+++.++.++++++.+++.+.. +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++
T Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999986643 4568999999999999999999999999999999999999999999999999999
Q ss_pred HHh---ccc----hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHH---HHHH
Q 011956 181 LIG---AFL----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEI---REYT 250 (474)
Q Consensus 181 ~l~---~~l----~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 250 (474)
.++ ... +||+.|++.++..++.++..+++||+|++...+++.+++.+..++....+.......... ....
T Consensus 181 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
T TIGR00879 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKR 260 (481)
T ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 998 443 999999997777777767777889999887777666665555554443322221111110 1111
Q ss_pred HHHhhccchhHHHHhhHh--hHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHH
Q 011956 251 ETLERLSEGGILELFQRK--YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGV 325 (474)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g 325 (474)
+.+.+..+..+.+.++.. ..+...+...+..+..........++.+.+.+..+.+. ........++.+++.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (481)
T TIGR00879 261 SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAI 340 (481)
T ss_pred HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112233333321 23444444445555444455566677777777666655 3666777788899999999
Q ss_pred HHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhh
Q 011956 326 LLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGS 405 (474)
Q Consensus 326 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 405 (474)
+++||++||+.+..+..+.+++.+.+.+......... ........+....++.+++..+..+....++.|.+|++.|++
T Consensus 341 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (481)
T TIGR00879 341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS-SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK 419 (481)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc-ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHH
Confidence 9999999999888877766666666553221111000 000133334444455555555666777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHhhheeCcCCCCCCHH
Q 011956 406 AGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLE 464 (474)
Q Consensus 406 ~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (474)
+.++.+...++|.+++|.+.+.+.+ .++...+++.++++++.+++.+++.+|+++++.+
T Consensus 420 ~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 420 GISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 9999999999999999999999988 4555666777777777777777777887766543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=310.63 Aligned_cols=441 Identities=35% Similarity=0.597 Sum_probs=360.9
Q ss_pred CchhHHHHHHHHHHHHHHhhccc--cccccccccccccccC-----CCh--hhHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 011956 32 SATSAVVLSTFVAVCGSYVFGSA--IGYSSPAQSGITNDLG-----LSV--AEYSLFGSILTIGAMIGAIMSGKIADYIG 102 (474)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~-----~s~--~~~g~~~s~~~l~~~~~~~~~G~l~dr~G 102 (474)
...............+.+..+++ .+..++....+.++.. .+. .+.+|+.+.+.++..++++++|+++|++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~G 117 (513)
T KOG0254|consen 38 MISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIG 117 (513)
T ss_pred cCceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456667777778888888886 6677777776666432 222 35599999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 011956 103 RRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLI 182 (474)
Q Consensus 103 rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 182 (474)
||+.++++.+++.++.+++++++|+++++++|+++|+|.|........+++|..|++.||...+..+....+|..++..+
T Consensus 118 Rk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 118 RKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hccc-----hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCC-CcchHHHHHHHH-HHHHHH-h
Q 011956 183 GAFL-----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGA-DADISEEAAEIR-EYTETL-E 254 (474)
Q Consensus 183 ~~~l-----~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~-~ 254 (474)
+... +||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++. ..+.+.+....+ +..... .
T Consensus 198 ~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 277 (513)
T KOG0254|consen 198 NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEV 277 (513)
T ss_pred hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhc
Confidence 7776 5999999999999887777888999999999999999999999999984 333333333333 111111 1
Q ss_pred hccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcc--hhHHHHHHHHHHHHHHHHHHHHhhcC
Q 011956 255 RLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG--SIGMIAMVVIQIPMTLLGVLLMDKSG 332 (474)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~ 332 (474)
...+..+.+++++...++..+...+..+.+..+.....+|.+.+++..+... .......++..+++..++.++.||+|
T Consensus 278 ~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~g 357 (513)
T KOG0254|consen 278 AEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFG 357 (513)
T ss_pred ccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1222246677765577778888889999999999999999999999888774 46677777888888888999999999
Q ss_pred CcceeeehhhhHHHHHHHHHHHhhhccccc-ccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHH
Q 011956 333 RRPLLLVSAAGTCLGCLLAALSFLFQDLQQ-WIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT 411 (474)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 411 (474)
||+.++.+...+.++.+++........... ......+..+...+++...+..+..++.+.+.+|.+|.+.|+.+.++..
T Consensus 358 Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~ 437 (513)
T KOG0254|consen 358 RRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAV 437 (513)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHH
Confidence 999999999999999998887765543321 1223456667777778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHH-hhheeCcCCCCCCHHHHHhhcCC
Q 011956 412 LVSWLGSWIISFTFNFLMKWSS-TGTFFAFSAICSLTVL-FVAKLVPETKGRTLEEIQASMNP 472 (474)
Q Consensus 412 ~~~~~g~~i~~~i~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 472 (474)
...++.+.+-........+... ...+..+.+++.+... ..+++.||+|+++.+|.++..++
T Consensus 438 ~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 438 AVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 9999988887777666666443 6677777777777777 78899999999999988876544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=318.64 Aligned_cols=389 Identities=21% Similarity=0.302 Sum_probs=296.7
Q ss_pred ccccccccccCCC---hhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 011956 60 PAQSGITNDLGLS---VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (474)
Q Consensus 60 ~~~~~i~~~~~~s---~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (474)
+..|.+.+|+|++ ..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5677899999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHhHHHHHHHHHHhhccCCChhH
Q 011956 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-NWRILALIGTIPCLVQLIGLCFIPESPRW 215 (474)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-~wr~~f~~~~~~~~~~~~~~~~~~~~p~~ 215 (474)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999998777 89999999998888877777889999999
Q ss_pred HHhcCChhHHHHHHHHHhCCCcchHHH-HHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhc
Q 011956 216 LAKTGKGIESEAALQRLRGADADISEE-AAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY 294 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (474)
+..+++.+++.+.+++..+.+.....+ ........+..++.++.+++++++++..+...+.....++.....++..+.+
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD 349 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988888877765543322111 1111111111111223577888988887777666655544433333333333
Q ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHH
Q 011956 295 ASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVG 374 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (474)
.+ ..+.+........++..+++.++.+++.||+|||+.+..+.++.+++++++.+.. .........
T Consensus 350 ~~----~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~ 415 (505)
T TIGR00898 350 LG----NLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP----------VDLYFLRTA 415 (505)
T ss_pred cc----ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC----------CCchHHHHH
Confidence 32 2233344555667788889999999999999999998888777777766655431 111122222
Q ss_pred HHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhhhee
Q 011956 375 VLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKL 454 (474)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (474)
..++..++.....+..+.+..|.+|++.|+++.|+.+....+|++++|.+.+ +.+.+....+.++++..++.+++ .++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~ 493 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGIL-TLF 493 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHH-HHc
Confidence 2333333333445666789999999999999999999999999999999998 55555566666666666555444 456
Q ss_pred CcCCCCCCHH
Q 011956 455 VPETKGRTLE 464 (474)
Q Consensus 455 ~~~~~~~~~~ 464 (474)
++|+++++.+
T Consensus 494 lpet~~~~l~ 503 (505)
T TIGR00898 494 LPETKGVPLP 503 (505)
T ss_pred CcCCCCCCCC
Confidence 7888877654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=289.72 Aligned_cols=367 Identities=18% Similarity=0.134 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 011956 38 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG 117 (474)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 117 (474)
+..++.+.++.|..+....+...++|++.+|+|+|..+.|++.|.|.+++.++.|+...+.||+.||++++..+.++.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 44566677777888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHH
Q 011956 118 WVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILAL 193 (474)
Q Consensus 118 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~ 193 (474)
++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+.+++.++|.+++.++ |||+.|+
T Consensus 92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888777 9999999
Q ss_pred HhHHHHHHHHHH-hhccC-CChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHH
Q 011956 194 IGTIPCLVQLIG-LCFIP-ESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAH 271 (474)
Q Consensus 194 ~~~~~~~~~~~~-~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (474)
+.+.++++..+. +..+| ++++ + ..+.+..+..+.+|+|..+
T Consensus 172 ~ia~l~ll~~~~~~~~lP~~~~~-----~--------------------------------~~~~~~~~~~~~l~~p~v~ 214 (394)
T COG2814 172 AIAVLALLALLLLWKLLPPSEIS-----G--------------------------------SLPGPLRTLLRLLRRPGVL 214 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCccCC-----C--------------------------------CCCcchhHHHHHhcCchHH
Confidence 999998886554 56678 1110 0 0001122345677788888
Q ss_pred HHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHH
Q 011956 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLA 351 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 351 (474)
..+....+.+...+..++++..++.+..+.+....++....++++.++|+.++|++.|| +.|+.+.....+.++..+.+
T Consensus 215 ~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l 293 (394)
T COG2814 215 LGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLAL 293 (394)
T ss_pred HHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHH
Confidence 87777777777666555555444444433333344588999999999999999999999 88887777767777766666
Q ss_pred HHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 352 ALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
.+. ..+.........+.+...............+.. ++.++.+.++.....|+|..+|..++|.+.|.
T Consensus 294 ~~~-----------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~ 361 (394)
T COG2814 294 TFT-----------GASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA 361 (394)
T ss_pred HHh-----------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 553 223333333333333332222333334455533 48899999999999999999999999999996
Q ss_pred hccchhHHHHHHHHHHHHhhhee
Q 011956 432 SSTGTFFAFSAICSLTVLFVAKL 454 (474)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~ 454 (474)
.++......+.+..+.+....+.
T Consensus 362 ~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 362 LGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=284.59 Aligned_cols=395 Identities=19% Similarity=0.210 Sum_probs=299.6
Q ss_pred CCchhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHH
Q 011956 31 ASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFS 110 (474)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~ 110 (474)
++.+++....+++.+.+.++.+-+. +.+.|.+.+|.++|.+|.|++.+++.+.|.++..+.|.++||.+.|+.+.++
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF---~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNF---NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 3444555555555555555555555 6677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHh--ccc--
Q 011956 111 DIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG--AFL-- 186 (474)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~l-- 186 (474)
+++.++.+++.+++++.+.+.+.-+++|...|...|++...++.|++++|||+..++++++.++|..+.|++. +++
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888 555
Q ss_pred --hhhHHHHHhHHHHHH-HHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhc-----cc
Q 011956 187 --NWRILALIGTIPCLV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERL-----SE 258 (474)
Q Consensus 187 --~wr~~f~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 258 (474)
+||..|++.++++++ +++.++..+|+|+..-...-++ ..++..+..+++++. .+
T Consensus 181 ~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~------------------~~~d~~e~~~~~~~~~~ls~~~ 242 (448)
T COG2271 181 HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEE------------------YRGDPLEIYEEEKENEGLTAWQ 242 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHH------------------hhcCchhhhhhhccCCCccHHH
Confidence 899999999998877 5555667888885321111000 000000000111111 11
Q ss_pred hhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhc--CCcce
Q 011956 259 GGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS--GRRPL 336 (474)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~ 336 (474)
.-.+-++++|..|.+.++..+.+..-++...+.|.|+.+..+.+..++......+-.++++|.++.|+++||+ |||..
T Consensus 243 i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p 322 (448)
T COG2271 243 IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP 322 (448)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch
Confidence 2345578889999999999999999999999999999887666666677889999999999999999999996 46655
Q ss_pred eeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHH
Q 011956 337 LLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL 416 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 416 (474)
..+.+.+....++...+.. +..+.....+++...+++..+..-+.-..+.|..|++..|++.|+...+.++
T Consensus 323 ~~~i~~~~i~~~~~~~w~~---------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl 393 (448)
T COG2271 323 MALIFMLLITASLVLYWLA---------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYL 393 (448)
T ss_pred HHHHHHHHHHHHHHHHHcC---------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHH
Confidence 5443333332222222210 0234455555666666666555555567889999999999999999999999
Q ss_pred -HHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHHhhheeC
Q 011956 417 -GSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLV 455 (474)
Q Consensus 417 -g~~i~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 455 (474)
|.+.+....|++.|. ++...+.++.+.+++..+++....
T Consensus 394 ~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 394 IGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999884 666666666555555544444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=304.42 Aligned_cols=387 Identities=16% Similarity=0.150 Sum_probs=253.8
Q ss_pred HHHHHHHHHHhhccccccccccccccccccCCChhh-HHH-----HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 011956 40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAE-YSL-----FGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (474)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~g~-----~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 113 (474)
......++++.+.++...++...|.+.++++.+.++ .++ +.++.++++.++++++|+++||+|||+++.++.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 455667788899999999999999999998654322 122 25788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHH--------HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhc-
Q 011956 114 CIIGWVIIVFSKAAWW--------LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA- 184 (474)
Q Consensus 114 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~- 184 (474)
++++++++++++|+++ ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|.++++.+..
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 8899999999999999999999999999999999999999888888877765432
Q ss_pred -----------cchhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Q 011956 185 -----------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETL 253 (474)
Q Consensus 185 -----------~l~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (474)
..|||++|++.+++.++.++....+||+|++...+++.++..+ +..
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-----------------------~~~ 233 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-----------------------EGL 233 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-----------------------ccc
Confidence 2389999999877766666666778999986533221111000 000
Q ss_pred hhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHH-cCCcc---hhHHHHHHHHHHHHHHHHHHHHh
Q 011956 254 ERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLGVLLMD 329 (474)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d 329 (474)
.+.++.++++++++. .+..........+ ....++....|.|.++.. .+.+. ........++.+++.++.|+++|
T Consensus 234 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 234 QDGPKVSFKEIATKH-WRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred cccccCCHHHHHHHh-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011223455665532 1222222211111 111223334455555432 24333 24555666778888999999999
Q ss_pred hcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHH
Q 011956 330 KSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL 409 (474)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 409 (474)
|+|||+.+..+.+...++......... ..+...+....++.+.......+....+..|.+|++.|+++.|+
T Consensus 312 r~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~ 382 (490)
T PRK10642 312 RFGRRPFVILGSVALFVLAIPAFILIN---------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAA 382 (490)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHH
Confidence 999999876665443332222111110 11222222222222222122233445677789999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hc-cchhHHHHHHHHHHHHhhheeCcCCCCC
Q 011956 410 VTLVSWLGSWIISFTFNFLMKW-SS-TGTFFAFSAICSLTVLFVAKLVPETKGR 461 (474)
Q Consensus 410 ~~~~~~~g~~i~~~i~g~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (474)
.+....+++.++|.+.+++.+. +. ....+...... +..++..++.||++++
T Consensus 383 ~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~-~i~~~~~~~~pes~~~ 435 (490)
T PRK10642 383 AFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA-VIGLITGVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH-HHHHHHHHHhccccCC
Confidence 7777788889999999998873 22 22333333333 3333333445776543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=293.96 Aligned_cols=364 Identities=13% Similarity=0.091 Sum_probs=254.6
Q ss_pred HHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 011956 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120 (474)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 120 (474)
.+.+.++.+..........+.+|.+.+|+|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.++++++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 90 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVL 90 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 33334444444344444566789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhH
Q 011956 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGT 196 (474)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~ 196 (474)
+++++|+++++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+ |||+.|++.+
T Consensus 91 ~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 170 (390)
T PRK03545 91 SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIG 170 (390)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHH
Confidence 999999999999999999999998999999999999999999999999999999999999988765 9999999988
Q ss_pred HHHHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHH
Q 011956 197 IPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV 275 (474)
Q Consensus 197 ~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (474)
++.++..+. ...+||.|+. +. + +..+.++.+|++.++....
T Consensus 171 ~~~~l~~~~~~~~~~~~~~~-----~~-~--------------------------------~~~~~~~~~~~~~~~~~~~ 212 (390)
T PRK03545 171 GGALITLLLLIKLLPLLPSE-----HS-G--------------------------------SLKSLPLLFRRPALVSLYL 212 (390)
T ss_pred HHHHHHHHHHHHhCCCCCCC-----Cc-c--------------------------------hHHHHHHHHhCcHHHHHHH
Confidence 877765443 3445665420 00 0 0012345566666555444
Q ss_pred HHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHh
Q 011956 276 GVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (474)
..++............+.|.....+.+....+.......++.+++.++.+++.||+++|.. ..+..+..++...+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~- 290 (390)
T PRK03545 213 LTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPA- 290 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHH-
Confidence 4333333322222223333322222122223466677788999999999999999988754 33333333333222211
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhcc
Q 011956 356 LFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSST 434 (474)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~ 434 (474)
..+........++.+.......+.....+.+..| +.++++.|+.+...++|..+||.+.|.+.| .+..
T Consensus 291 ----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~ 359 (390)
T PRK03545 291 ----------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS 359 (390)
T ss_pred ----------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 1222233333333344444445555677778766 688999999999999999999999999999 4444
Q ss_pred chhHHHHHHHHHHHHhhheeC
Q 011956 435 GTFFAFSAICSLTVLFVAKLV 455 (474)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~ 455 (474)
..+...+.+..+..++.+...
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 360 SIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 445444444444444443333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=308.75 Aligned_cols=369 Identities=17% Similarity=0.087 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 011956 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII 116 (474)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 116 (474)
.+....+..++.+....+....++..|.+.+|+|++.++.|++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 33344444455555555566667888899999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHH-----hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----
Q 011956 117 GWVIIVF-----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----- 186 (474)
Q Consensus 117 ~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----- 186 (474)
+.+..++ ++|++.+++.|+++|++.+...|...++++||+|+++|+++++++..+.++|.++++++...+
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 7776665 589999999999999999999999999999999999999999999999999999998876432
Q ss_pred --hhhHHHHHhHHHHHHHHH-HhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhcc-chh-H
Q 011956 187 --NWRILALIGTIPCLVQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLS-EGG-I 261 (474)
Q Consensus 187 --~wr~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 261 (474)
+||..|.+.+++.++..+ .+++.+++|+....+.+ ++ . ..+ ... .++ +. .+.++.. ... .
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~---~---~~~-~~~-~~~-----~~-~~~~~~~~~~~~~ 251 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-EE---I---FGE-PIS-EED-----KE-TESTDMTKWQIFV 251 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hh---c---ccC-ccc-hhh-----hc-cccccCcHHHHHH
Confidence 589988887877766444 44556777653211111 00 0 000 000 000 00 0000000 011 1
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehh
Q 011956 262 LELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSA 341 (474)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 341 (474)
+..++++..+...+..++..........+.|.|+...++....+.+.......++.+++.++.|+++||++||+......
T Consensus 252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~ 331 (467)
T PRK09556 252 EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI 331 (467)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 23566777776666555555443333344444443322222223346666777889999999999999999988765443
Q ss_pred hhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHH-HHHH
Q 011956 342 AGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL-GSWI 420 (474)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i 420 (474)
....++...+.... ..+........+..+....+..........|..|++.+|++.|+.+...++ |.++
T Consensus 332 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~ 401 (467)
T PRK09556 332 ALALIIFTLGVYQH----------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF 401 (467)
T ss_pred HHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH
Confidence 33332222211110 122222222222233222222222235667999999999999999999997 7799
Q ss_pred HHHHHHHHHh
Q 011956 421 ISFTFNFLMK 430 (474)
Q Consensus 421 ~~~i~g~~~~ 430 (474)
+|.+.|.+.|
T Consensus 402 ~~~~~G~i~~ 411 (467)
T PRK09556 402 AKVGLGMIAD 411 (467)
T ss_pred HhhhHHHHhc
Confidence 9999999999
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=291.89 Aligned_cols=369 Identities=18% Similarity=0.174 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHHHHhhccccccccccccccccccC---CChhhHHHHHHHH---HHHHHHHHHHHHHhhhccCchhHHHH
Q 011956 36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLG---LSVAEYSLFGSIL---TIGAMIGAIMSGKIADYIGRRGTMGF 109 (474)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~s~~---~l~~~~~~~~~G~l~dr~Grr~~l~~ 109 (474)
+++..+....++.+.+.++...++...|.+.+|++ .+..+.+...+.+ .++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34445566667778888888888888889999984 5555554444444 45555999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011956 110 SDIVCIIGWVIIVFSKAAW--------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 181 (474)
+.++++++++++++++|+. .++++|+++|++.|..++...+++.|++|+++|+++.++...+...|.++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 58899999999999999999999999999999999999998888888777765
Q ss_pred Hhc------------cchhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHH
Q 011956 182 IGA------------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREY 249 (474)
Q Consensus 182 l~~------------~l~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (474)
+.. ..|||++|++.+++.++.......+||+|++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~------------------------------- 227 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR------------------------------- 227 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-------------------------------
Confidence 432 2389999999888877766555667777642100
Q ss_pred HHHHhhccchhHHHHhhHhhHHHHHHHHHHH-HHHhhccchhhHhcHHHHHHH-cCCcc---hhHHHHHHHHHHHHHHHH
Q 011956 250 TETLERLSEGGILELFQRKYAHSLIVGVGLM-VLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLG 324 (474)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~ 324 (474)
++.+..+++++++++..+...+...+. ... .+....|.|.++.+ .+.+. +.......+...++.++.
T Consensus 228 ----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~ 299 (432)
T PRK10406 228 ----ALKEAGSLKGLWRNRRAFIMVLGFTAAGSLC----FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLI 299 (432)
T ss_pred ----hhcccccHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000122456677766555443333222 222 22233445554432 34443 244555566677788889
Q ss_pred HHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchh
Q 011956 325 VLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKG 404 (474)
Q Consensus 325 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 404 (474)
|+++||++||+.+.....+.++....+...... ......................+....+.+|.+|++.|+
T Consensus 300 G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~ 371 (432)
T PRK10406 300 GALSDKIGRRTSMLCFGSLAALFTVPILSALQN--------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRA 371 (432)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccc
Confidence 999999999987655444332222211110000 111111111111111111122334567889999999999
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhh
Q 011956 405 SAGSLVTLVSWL-GSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFV 451 (474)
Q Consensus 405 ~~~g~~~~~~~~-g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (474)
++.|+.+...+. .+...|.+.+.+.+.+.+...+++.++..+.+.+.
T Consensus 372 t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 372 LGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999988775 34457777775544443444444443434433333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=297.36 Aligned_cols=390 Identities=18% Similarity=0.181 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH
Q 011956 39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW 118 (474)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 118 (474)
.......++.+...++....++.+|.+.+++|+|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence 33344445555555555555778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHH
Q 011956 119 VIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALI 194 (474)
Q Consensus 119 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~ 194 (474)
+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+ +||+.|++
T Consensus 103 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 103 ILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888766 99999999
Q ss_pred hHHHHHHH-HHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHH-----HHhhHh
Q 011956 195 GTIPCLVQ-LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGIL-----ELFQRK 268 (474)
Q Consensus 195 ~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 268 (474)
.+++.++. ++..++++|+|++...+...+...+ ..+. +++++.++.+.+ ..++++
T Consensus 183 ~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 243 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD-----------ALEL--------AQQQEGAGLSRKEILTKYVLLNP 243 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc-----------cccc--------chhccccCCChhhhHHHHHhcCh
Confidence 88776654 4445567887753211110000000 0000 000000011111 234455
Q ss_pred hHHHHHHHHHHHHHHhhccchhhHhcHHHHHH-HcCCc---chhHHHHHHHHHHHHHHHHHHHHhhcC--Ccceeee-hh
Q 011956 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI-SAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSG--RRPLLLV-SA 341 (474)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~-~~ 341 (474)
..+...+.......... .+..+.+.++. ..+.+ .+.......+++++++++.|+++||+. +|+.... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~----~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~ 319 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRA----AINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFA 319 (434)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHH
Confidence 55555444444433332 23334444442 22443 346677778899999999999999983 3333221 11
Q ss_pred hhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 011956 342 AGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 421 (474)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 421 (474)
....+....+.... ..+........+..+.+..+..........|..|++.++++.|+.++..++|.+++
T Consensus 320 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 389 (434)
T PRK11663 320 AGILLSVGSLWLMP----------FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALS 389 (434)
T ss_pred HHHHHHHHHHHHcc----------cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHh
Confidence 11111211111110 11111111222222222222222334567898999999999999999999999999
Q ss_pred HHHHHHHHh-hhccchhHHHHHHHHHHHHhhheeCcCCCCC
Q 011956 422 SFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPETKGR 461 (474)
Q Consensus 422 ~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (474)
|.+.|.+.| .++...+...+++.++.++..+...|+++++
T Consensus 390 p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 390 GYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred cccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 999999999 4544555555555555555555445544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=292.44 Aligned_cols=372 Identities=15% Similarity=0.142 Sum_probs=246.2
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 011956 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (474)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 114 (474)
|+....+++. .+.+..+....+...|.+++|+|++.++.|++.+++.+++.+++++.|+++||+|||+++..+.+++
T Consensus 7 ~~~~~~~~~~---~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 7 RRLIIFLFIL---FIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred hHHHHHHHHH---HHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 4444444444 4444555555566777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcc---------
Q 011956 115 IIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF--------- 185 (474)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~--------- 185 (474)
+++++++++++|++++++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888754
Q ss_pred -chhhHHHHHhHHHHHHH-HHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHH
Q 011956 186 -LNWRILALIGTIPCLVQ-LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263 (474)
Q Consensus 186 -l~wr~~f~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (474)
.|||+.|++.+++.++. .+.++++||+|+.... -+.++.+...+..+....+.++ .. +..+..+...+..+++
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~ 238 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQ-PE---GAFAHAAMPQRSMLRE 238 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhccccccc-cc---cccccccccHHHHHHH
Confidence 28999999988887664 4455678898852100 0011111111111111000000 00 0000000000112333
Q ss_pred HhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHc--CC---cchhHHHHHHHHHHHHHHHHHHHHhhcCCccee-
Q 011956 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA--GF---SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLL- 337 (474)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~- 337 (474)
++ ++..+......++.... ...+..|.|.+++.. +. ..+.......++.+++.++.|+++||+++|+..
T Consensus 239 ~~-~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~ 313 (412)
T TIGR02332 239 IF-TPAIMLYTLAYFCLTNT----LSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHT 313 (412)
T ss_pred hc-ChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHH
Confidence 33 24444333333333332 333445566555542 22 234667788889999999999999999977643
Q ss_pred eehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHH
Q 011956 338 LVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLG 417 (474)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 417 (474)
........++. .+... . ........... ..........+..+....|.+|+++|+++.|+.+...++|
T Consensus 314 ~~~~~~~~~~~-~~~~~--~--------~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g 381 (412)
T TIGR02332 314 ALPYLFAAAGW-LLASA--T--------DHNLIQLLGII-MASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIG 381 (412)
T ss_pred HHHHHHHHHHH-HHHHh--c--------CCHHHHHHHHH-HHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhh
Confidence 22222222222 11111 0 11111111111 1111111223334455677889999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 011956 418 SWIISFTFNFLMKW 431 (474)
Q Consensus 418 ~~i~~~i~g~~~~~ 431 (474)
++++|.+.|.+.|.
T Consensus 382 ~~~~p~~~g~i~~~ 395 (412)
T TIGR02332 382 SALSPFLIGILKDA 395 (412)
T ss_pred hhhhhhhccccccc
Confidence 99999999999994
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=290.86 Aligned_cols=368 Identities=20% Similarity=0.239 Sum_probs=266.2
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 011956 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (474)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 114 (474)
++.+....+.++..+.++++....++..|.+.+|+|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 35566777777777888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhH
Q 011956 115 IIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRI 190 (474)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~ 190 (474)
+++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 170 (406)
T PRK11551 91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH 170 (406)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887655 8999
Q ss_pred HHHHhHHHHHHHH-HHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhH--
Q 011956 191 LALIGTIPCLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQR-- 267 (474)
Q Consensus 191 ~f~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 267 (474)
.|++.++..++.. +...++||+|++..++++.++.+. ..+..+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~ 218 (406)
T PRK11551 171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP--------------------------------VLRALFGEGR 218 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh--------------------------------hHHHHhhhhh
Confidence 9998777655544 344567888764322211100000 00001111
Q ss_pred -hhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhh
Q 011956 268 -KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAG 343 (474)
Q Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 343 (474)
+..+......+..... ......|.+.+.++.+.+. +.......++.+++.++.|++.||++||+.+..+...
T Consensus 219 ~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 294 (406)
T PRK11551 219 ATATLLLWISYFFTLIV----LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAG 294 (406)
T ss_pred hhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1111111122222221 2223344555555555433 4677777888999999999999999999887765555
Q ss_pred HHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011956 344 TCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISF 423 (474)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 423 (474)
..++.+.+... .+........++.+....+..+..+++..|.+|+++|+++.|+.+...++|..++|.
T Consensus 295 ~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 362 (406)
T PRK11551 295 ILASLAALAAA------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPL 362 (406)
T ss_pred HHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhh
Confidence 44444433321 222222233333444444456667788999999999999999999999999999999
Q ss_pred HHHHHHhhh-ccchhHHHHHHHHHHHHh
Q 011956 424 TFNFLMKWS-STGTFFAFSAICSLTVLF 450 (474)
Q Consensus 424 i~g~~~~~~-~~~~~~~~~~~~~~~~~~ 450 (474)
+.|.+.+.. .+...+.....+.+.+.+
T Consensus 363 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK11551 363 LAGQLLALGRSTVGVIGASIPVILVAAL 390 (406)
T ss_pred hHhhhhccCCchHHHHHHHHHHHHHHHH
Confidence 999999843 333333333333333333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=289.30 Aligned_cols=359 Identities=20% Similarity=0.192 Sum_probs=255.0
Q ss_pred HHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH
Q 011956 40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV 119 (474)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 119 (474)
....+.++.+.++++.....+..|.+++++|+++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~ 98 (426)
T PRK12307 19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTG 98 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 34556666677777887788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHh
Q 011956 120 IIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIG 195 (474)
Q Consensus 120 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~ 195 (474)
+++++++++.++++|+++|++.+..++....++.|++|+++|++++++...+.++|.++++.+...+ +||+.|++.
T Consensus 99 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 99 LSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877654 999999885
Q ss_pred HHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHH
Q 011956 196 TIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV 275 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (474)
.+..++........||++++..++.+. .+... +...+....+++++++++.++....
T Consensus 179 ~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (426)
T PRK12307 179 LLPVLLVIYIRARAPESKEWEEAKLSG------------KGKHS-----------QSAWSVFSLSMKGLFNRAQFPLTLC 235 (426)
T ss_pred HHHHHHHHHHHHHCCCChHHHHhhhhc------------ccccc-----------ccchhhhhHHHHHHHhhchHHHHHH
Confidence 544433333333346654332111000 00000 0000011224566777766655443
Q ss_pred HHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHH
Q 011956 276 GVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAA 352 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 352 (474)
.....+.. ......+..+.+.+....+.+.. .......++.+++.++.+++.||++||+.+..+..+..+..+.+.
T Consensus 236 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 314 (426)
T PRK12307 236 VFIVLFSI-FGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLF 314 (426)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33322221 22222233344555554555433 556667788999999999999999999887766655544443332
Q ss_pred HHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011956 353 LSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS 432 (474)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~ 432 (474)
... ...........+..+....+..+....++.|.+|++.||++.|+.+...++++.++|.+.|.+.+..
T Consensus 315 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 315 RIP----------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HHc----------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 210 1111111111111122222334455577899999999999999999999999999999999999843
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=286.60 Aligned_cols=376 Identities=19% Similarity=0.145 Sum_probs=258.5
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 011956 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (474)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 114 (474)
++++.....+.++.+.+.++....++..|.+++++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44555566677777788888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----h--h
Q 011956 115 IIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N--W 188 (474)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~--w 188 (474)
+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+ + |
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888765 4 9
Q ss_pred hHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHh
Q 011956 189 RILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK 268 (474)
Q Consensus 189 r~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (474)
|+.|++.++..++.++....+||++++...+++.++..+..++..+..... +.. .+......++..+++
T Consensus 168 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~ 236 (405)
T TIGR00891 168 RALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI-------ANI----VMTLAAAMVQSAGKR 236 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh-------hhh----hhhhhHHhhhhhhhh
Confidence 999998777666666666677887764433222111111111111000000 000 000000111111111
Q ss_pred h--HHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHH
Q 011956 269 Y--AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCL 346 (474)
Q Consensus 269 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 346 (474)
. +.....................+.|.....+....+.+.......++.+++.++.+++.||++||+.+..+.....+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~ 316 (405)
T TIGR00891 237 WPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL 316 (405)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence 1 11111111111121112222333333322221122233666777889999999999999999999987766554422
Q ss_pred HHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011956 347 GCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFN 426 (474)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g 426 (474)
........ ..+.........+.+....+..+....++.|..|+++|+++.|+.+...++|..++|.+.|
T Consensus 317 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g 385 (405)
T TIGR00891 317 LIIPVFAI-----------GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA 385 (405)
T ss_pred HHHHHHHh-----------CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 22221111 1222222222233334444455666788999999999999999999999999999999999
Q ss_pred HHHhhh
Q 011956 427 FLMKWS 432 (474)
Q Consensus 427 ~~~~~~ 432 (474)
.+.|..
T Consensus 386 ~l~~~~ 391 (405)
T TIGR00891 386 LLAQRL 391 (405)
T ss_pred HHHHhc
Confidence 999943
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=281.17 Aligned_cols=351 Identities=14% Similarity=0.115 Sum_probs=247.4
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 011956 56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRL 135 (474)
Q Consensus 56 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 135 (474)
...++.+|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHHHHHHHhhcc-
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFI- 209 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~- 209 (474)
++|++.+...+....++.+++| ++|+++++++..+...|..+++.++..+ +||+.+.+.++..++.++.++..
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999997 7799999999988878877777776654 79998877666555444333332
Q ss_pred CCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccch
Q 011956 210 PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN 289 (474)
Q Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (474)
++.|+ ++. + ++...++.++++..+.......+..........
T Consensus 185 ~~~~~-----~~~--------------------------------~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 226 (393)
T PRK09705 185 AREVA-----SSH--------------------------------K-TTTTPVRVVFTPRAWTLGVYFGLINGGYASLIA 226 (393)
T ss_pred cCCCc-----ccc--------------------------------C-CCcCCcccccCHhHHHHHHHHHHHHHHHHHHHH
Confidence 22221 000 0 000112233444444444444444333333333
Q ss_pred hhHhcHHHHHHHcCCc---chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccccccc
Q 011956 290 GIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKA 366 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (474)
+.+.++.+.+.+ .+.......++.++++++.+++.||++||+....+..+..++.+.+... .
T Consensus 227 ----~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-----------~ 291 (393)
T PRK09705 227 ----WLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-----------P 291 (393)
T ss_pred ----HHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-----------c
Confidence 344444444443 3467788889999999999999999999988877766665555544321 1
Q ss_pred chHHHHHHHHHHHHHHhccccchhhhhhcccC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHH-HHH
Q 011956 367 TPFLALVGVLVYTGSFSLGMGGIPWVIMSEVF-PINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAF-SAI 443 (474)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~-~~~ 443 (474)
....... .. +.+.......+.......+.. |++++++..|+.+...+++..++|.+.|++.| .+.+...+.. ...
T Consensus 292 ~~~~~~~-~~-l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~ 369 (393)
T PRK09705 292 LQLPVLW-AM-VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC 369 (393)
T ss_pred chHHHHH-HH-HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 1111111 11 223333344455555555665 45789999999999999999999999999999 4434444443 444
Q ss_pred HHHHHHhhheeCcCCCCCC
Q 011956 444 CSLTVLFVAKLVPETKGRT 462 (474)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~ 462 (474)
+++..+....+.+|++++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 370 VVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHhccccccch
Confidence 4444444556667766553
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=276.31 Aligned_cols=345 Identities=15% Similarity=0.096 Sum_probs=236.4
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 011956 56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRL 135 (474)
Q Consensus 56 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 135 (474)
..+++.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|+++++++|+
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999877665555454433333479999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHH-HHHhhccC
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQ-LIGLCFIP 210 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~-~~~~~~~~ 210 (474)
++|++.+. .+.....++|++|+++|++++++.+.+.++|.+++++++..+ |||+.|++.++++++. ++.++++|
T Consensus 88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999986 556666679999999999999999999999999999888877 9999999988877664 44556789
Q ss_pred CChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchh
Q 011956 211 ESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNG 290 (474)
Q Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (474)
|+|++.. +.. .. + + ...+++++++++..+...+..++.....+....
T Consensus 167 ~~p~~~~---~~~--------------~~--~--------~-----~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~- 213 (368)
T TIGR00903 167 ALPFQAA---EGF--------------GF--K--------D-----AVKEFGALAGRKDLWIIGAILGFGVALFDNLAI- 213 (368)
T ss_pred CCCCCCC---CCc--------------ch--H--------H-----HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH-
Confidence 9875311 000 00 0 0 001356788888887777777666666554444
Q ss_pred hHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc---ceeee-hhhhHHHHHHHHHHHhhhccccccccc
Q 011956 291 IAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR---PLLLV-SAAGTCLGCLLAALSFLFQDLQQWIKA 366 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (474)
|+|.++++.+.+.. ......+..+.+.+..++++||..|| +.... .....++....+... .
T Consensus 214 ---wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~-----------~ 278 (368)
T TIGR00903 214 ---WLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE-----------L 278 (368)
T ss_pred ---HHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-----------c
Confidence 44444444444332 22223333344445567888887654 22221 222222222222211 1
Q ss_pred chHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 011956 367 TPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSL 446 (474)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~ 446 (474)
... .......+.+.+.....+..+++.+|.+|++.|+++.|+.+...++++..+|.+.+.+.. +....+..+++...+
T Consensus 279 ~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i 356 (368)
T TIGR00903 279 NRL-ALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITI 356 (368)
T ss_pred ccH-HHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 122 222233333344444455667899999999999999999999999999999999988774 333445556655555
Q ss_pred HHHhh
Q 011956 447 TVLFV 451 (474)
Q Consensus 447 ~~~~~ 451 (474)
.++..
T Consensus 357 ~~~~~ 361 (368)
T TIGR00903 357 AFAIA 361 (368)
T ss_pred HHHHH
Confidence 55444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=293.08 Aligned_cols=385 Identities=15% Similarity=0.072 Sum_probs=273.8
Q ss_pred HHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 011956 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII 116 (474)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 116 (474)
.+..+..++++.+....+.++++..+|.+.+|+|.+.++.+|+.+.|.+++.++++++|+++||+|||+++.++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45667778888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcC-CCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHH
Q 011956 117 GWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRIL 191 (474)
Q Consensus 117 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~ 191 (474)
+++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+ +|||.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 9999999999999999999999999999998888887776 678899999999999999999999999887 99999
Q ss_pred HHHhHHHHHHHHH-HhhccCCChhHHHhcCChhHHHH----------HHHHHhCCCcchHHHHHH-------HHH-HHHH
Q 011956 192 ALIGTIPCLVQLI-GLCFIPESPRWLAKTGKGIESEA----------ALQRLRGADADISEEAAE-------IRE-YTET 252 (474)
Q Consensus 192 f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-------~~~-~~~~ 252 (474)
|++..++.++.++ ..+++||+|+...++.+...... ..+............... ... ...+
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e 243 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQ 243 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877766444 44567776532111111111100 000000000000000000 000 0001
Q ss_pred HhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 011956 253 LERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSG 332 (474)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 332 (474)
.+..++.-..+++|++.+....+..+.............+.|++...+......+....+..++..++.++.|++.||++
T Consensus 244 ~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g 323 (495)
T PRK14995 244 LAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLG 323 (495)
T ss_pred hcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11111222246777777666555555544444333344455554444444445568888888999999999999999999
Q ss_pred CcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHH
Q 011956 333 RRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTL 412 (474)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 412 (474)
+|+.+..+..+.+++...+..... ..+........++.+.......+.....+.+..|+++++.+.++.++
T Consensus 324 ~~~~~~~g~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 394 (495)
T PRK14995 324 LRLVATGGMALSALSFYGLAMTDF---------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETM 394 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcC---------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHH
Confidence 998877776666666554433210 12222222333333433334445556777788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011956 413 VSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 413 ~~~~g~~i~~~i~g~~~~ 430 (474)
..++|+.+|+.+.|.+.+
T Consensus 395 ~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 395 AYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999876
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=280.43 Aligned_cols=377 Identities=14% Similarity=0.093 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHhhccccccccccccc-ccccc--CCChhhHHHHH-----HHHHHHHHHHHHHHHHhhhccCchhHHHHH
Q 011956 39 LSTFVAVCGSYVFGSAIGYSSPAQSG-ITNDL--GLSVAEYSLFG-----SILTIGAMIGAIMSGKIADYIGRRGTMGFS 110 (474)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~g~~~-----s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~ 110 (474)
.......++.+.+.++....+...|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++..+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~ 100 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 35566666778888888877766653 45555 66665 45553 345677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHH--------HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 011956 111 DIVCIIGWVIIVFSKAAW--------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLI 182 (474)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 182 (474)
.++++++++++++++|++ .++++|+++|++.|..++....++.|++|+++|++..+....+..+|.+++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~ 180 (438)
T PRK09952 101 VWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGL 180 (438)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 588899999999999999999999999999999999999999999999888655
Q ss_pred hc------------cchhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 011956 183 GA------------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYT 250 (474)
Q Consensus 183 ~~------------~l~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (474)
.. ..|||++|++.+++.++.......+||+|++...+++.++.
T Consensus 181 ~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~------------------------- 235 (438)
T PRK09952 181 VSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA------------------------- 235 (438)
T ss_pred HHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-------------------------
Confidence 43 23899999998877666555555678887653222111000
Q ss_pred HHHhhccchhH-HHHhhHhhHHHHHHH-HHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHH
Q 011956 251 ETLERLSEGGI-LELFQRKYAHSLIVG-VGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGV 325 (474)
Q Consensus 251 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g 325 (474)
+++.+. +.+++++..+..... .+......+....+.+.|... ..+.+.. ......++..+++.++.|
T Consensus 236 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~~g~s~~~~~~~~~~~g~~~~i~~~~~g 307 (438)
T PRK09952 236 -----KKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQ---NLGLPRELFLNIGLLVGGLSCLTIPCFA 307 (438)
T ss_pred -----cccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111 123334433333221 111122222222233333322 2233333 233445566778888999
Q ss_pred HHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhh
Q 011956 326 LLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGS 405 (474)
Q Consensus 326 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 405 (474)
+++||++||+.+..+.++..++...+...... ......+....++.+.......+..+++..|.+|++.|++
T Consensus 308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~t 379 (438)
T PRK09952 308 WLADRFGRRRVYITGALIGTLSAFPFFMALEA--------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYS 379 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHH
Confidence 99999999988776655444333222221100 1122222222222233333335556789999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHh-h-hccchhHHHHHHHHHHHHhhheeCcC
Q 011956 406 AGSLVTLVSW-LGSWIISFTFNFLMK-W-SSTGTFFAFSAICSLTVLFVAKLVPE 457 (474)
Q Consensus 406 ~~g~~~~~~~-~g~~i~~~i~g~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
+.|+.+.... +++.++|.+.+.+.+ . +.+...+.+..++.+.+.+..+..++
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccc
Confidence 9999766654 899999999999988 3 22333344444444444444444454
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=279.98 Aligned_cols=384 Identities=16% Similarity=0.133 Sum_probs=240.9
Q ss_pred ccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh----hHHHHHHH
Q 011956 58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK----AAWWLDLG 133 (474)
Q Consensus 58 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~ 133 (474)
.+...|.+.++ |++.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++++++ +++.+++.
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 126 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 126 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 45567778888 99999999999999999999999999999999999999999999999999888763 78889999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHH-HHHHHhccc----hhhHHHHHhHHHHHH-HHHHhh
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS-MTYLIGAFL----NWRILALIGTIPCLV-QLIGLC 207 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l----~wr~~f~~~~~~~~~-~~~~~~ 207 (474)
|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+|+++..+ +||+.|++.+++.++ .++..+
T Consensus 127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888999999999999999999999998864 455443222 999999998877666 445556
Q ss_pred ccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchh-HHHHhhHhhHHHHHHHHHHHHHHhhc
Q 011956 208 FIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGG-ILELFQRKYAHSLIVGVGLMVLQQFG 286 (474)
Q Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (474)
++||+|+....+.+. +.++ + ..... .+ .+..+...++. .+..+|++.++...+..++.....+.
T Consensus 207 ~~~~~~~~~~~~~~~-~~~~---~---~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (452)
T PRK11273 207 MMRDTPQSCGLPPIE-EYKN---D---YPDDY-------NE-KHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYG 271 (452)
T ss_pred HccCCHhhcCCCChh-hhhh---c---ccccc-------cc-ccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 778887532111110 0000 0 00000 00 00000000011 12355666666666665555544333
Q ss_pred cchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcC--Ccceeee-hhhhHHHHHHHHHHHhhhcccccc
Q 011956 287 GVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSG--RRPLLLV-SAAGTCLGCLLAALSFLFQDLQQW 363 (474)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 363 (474)
...+.|.|+....+......+.......++.+++.++.|+++||++ ||+.... ...+..++.+.+... .
T Consensus 272 ~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~--~------ 343 (452)
T PRK11273 272 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN--P------ 343 (452)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh--c------
Confidence 3334444443322211222335566777888899999999999994 3432211 111112222211110 0
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHh-hhccchhHHHH
Q 011956 364 IKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWI-ISFTFNFLMK-WSSTGTFFAFS 441 (474)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i-~~~i~g~~~~-~~~~~~~~~~~ 441 (474)
..+...........+............+..|.+|++.+|+++|+.+...++|+.+ +|.+.|.+.| .++...+.+..
T Consensus 344 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~ 421 (452)
T PRK11273 344 --AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 421 (452)
T ss_pred --ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHH
Confidence 1111111122222222221222223356779999999999999999999998765 7999999999 45445555555
Q ss_pred HHHHHHHHhhheeCcCCCCCCHHHHHh
Q 011956 442 AICSLTVLFVAKLVPETKGRTLEEIQA 468 (474)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (474)
+.+++..+... .....++|+.||..+
T Consensus 422 ~~~~~~~~~~~-~~~~~~~~~~~~~~~ 447 (452)
T PRK11273 422 GGSILAVILLI-VVMIGEKRHHEELLQ 447 (452)
T ss_pred HHHHHHHHHHH-HHhccccchHHHHHh
Confidence 55444444333 333344444454433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=252.30 Aligned_cols=414 Identities=20% Similarity=0.240 Sum_probs=308.1
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 011956 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (474)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 113 (474)
.+.++-..+...++...+..-.-..+-+.|.+.+.+|.+..|..++....+.|..+++..+|.++|++|||+.+.+....
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~ 152 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLV 152 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHH
Confidence 34455555556666655554444445566678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhh
Q 011956 114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWR 189 (474)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr 189 (474)
.++...+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.++...++... |||
T Consensus 153 t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr 230 (528)
T KOG0253|consen 153 TGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR 230 (528)
T ss_pred HHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999998 898999999999999998777666 78888988887776554 999
Q ss_pred HHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcch--------------HHHHHHHHHHHHHHhh
Q 011956 190 ILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADI--------------SEEAAEIREYTETLER 255 (474)
Q Consensus 190 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 255 (474)
|.....+.+..+.+...+++||+||+...+++.+++.+.++++.+.|... +++..+..+...+..+
T Consensus 231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~k 310 (528)
T KOG0253|consen 231 YLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAK 310 (528)
T ss_pred HHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcccc
Confidence 99888888888888888999999999999999999999999998766532 1111111122222223
Q ss_pred ccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHc--------------------CCcch---hHHHH
Q 011956 256 LSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA--------------------GFSGS---IGMIA 312 (474)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~---~~~~~ 312 (474)
....+..+++..+.++..++.....+...+. ++.........++.. ..+.. .-...
T Consensus 311 e~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdlli 389 (528)
T KOG0253|consen 311 EVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLI 389 (528)
T ss_pred ccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHH
Confidence 4455667777555555444443333332222 222222222222110 11111 34456
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhh
Q 011956 313 MVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWV 392 (474)
Q Consensus 313 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (474)
..+....|.++.+++.||+|||+.+...+++++++.+++.... ..... .+..+..-.+..+.+.+.+.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----------~rn~~-tvllf~arafisg~fqvaYv 457 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----------TRNAY-TVLLFTARAFISGAFQVAYV 457 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----------Ccchh-HHHHHHHHHHHhchheEEEE
Confidence 6678899999999999999999999998888888777766541 22222 22233333444455667789
Q ss_pred hhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhhheeCcCCCCCCH
Q 011956 393 IMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTL 463 (474)
Q Consensus 393 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (474)
|..|++|+..|+++.|.......+|+++.|.+. ...+...+.+..++++++++.++...++--|+|+|..
T Consensus 458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999999999999999999999999999999998 5566666778888998888888888888788888753
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=331.93 Aligned_cols=422 Identities=34% Similarity=0.623 Sum_probs=321.6
Q ss_pred HHHHHhhccccccccccccccc--cccCC---------ChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 011956 45 VCGSYVFGSAIGYSSPAQSGIT--NDLGL---------SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (474)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~---------s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 113 (474)
.++.+.++++....+...+... .+++. +..+.+++.+...+|..+|++++|+++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4445666777766655544333 12222 234578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----
Q 011956 114 CIIGWVIIVFSK---AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---- 186 (474)
Q Consensus 114 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---- 186 (474)
..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 9999999999999999999999999999999999999999999999999998888776544
Q ss_pred h---hhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHH
Q 011956 187 N---WRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263 (474)
Q Consensus 187 ~---wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (474)
+ ||+.+++.+++.++..+..+++||+|+|+..++|.+++++.+++.++.+...++..+..++.++ .++.+.++++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 243 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKE--SQESKASWRD 243 (451)
T ss_pred ccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccc--ccccceeeee
Confidence 4 9999999999998877788899999999999999999999988865543222221111111111 1111256777
Q ss_pred HhhHhh-HHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch-hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehh
Q 011956 264 LFQRKY-AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS-IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSA 341 (474)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 341 (474)
+++++. .++......+.......+.....+|.+.+++..+.+.. .......+..+++.+++.++.||+|||+.+..+.
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~ 323 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL 323 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777654 44555555555555566666777788887777766666 5555666777778888889999999999999988
Q ss_pred hhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 011956 342 AGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 421 (474)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 421 (474)
..++++.+.+........... +......+....+....+..+..+..+.+..|.+|++.|+++.|+....++++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~ 401 (451)
T PF00083_consen 324 LLMAICSLILGIIFFLGVSSS--SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFII 401 (451)
T ss_pred ccccccccccccccccccccc--cccccccceeeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 888877776651111110000 011233333344444555667778888999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hccchhHHHHHHHHHHHHhhheeCcCCCCCCHHHHHhhc
Q 011956 422 SFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASM 470 (474)
Q Consensus 422 ~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
|.+...+.+. +....+.++++++.+..++.++++||+|+++.+|.++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 402 PFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 9999888874 336778888888888888889999999999999998864
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=268.73 Aligned_cols=331 Identities=14% Similarity=0.132 Sum_probs=235.7
Q ss_pred cccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 011956 57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (474)
Q Consensus 57 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (474)
...+.+|.+.+|+|+++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 33456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh-hccCC
Q 011956 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPE 211 (474)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~-~~~~~ 211 (474)
+|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+ +||+.|++.+++.++..+.. ..+||
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999998876 99999999887766644433 34566
Q ss_pred ChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhh
Q 011956 212 SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGI 291 (474)
Q Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (474)
+|+. + + ......++.+++|..+......++...........
T Consensus 198 ~~~~-----~-~--------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (394)
T PRK10213 198 LPGE-----P-S--------------------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTY- 238 (394)
T ss_pred CCcc-----c-c--------------------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5420 0 0 00011234566666665544433333332222222
Q ss_pred HhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccch
Q 011956 292 AFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
..+.+.+..+.+. +......+++.+++.++.+++.||.+ |+.+..+..+..+..+.+... ..+
T Consensus 239 --~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~-----------~~~ 304 (394)
T PRK10213 239 --IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLW-----------GSD 304 (394)
T ss_pred --HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH-----------hhh
Confidence 1233333344443 36677777889999999999999954 443333333322222222211 122
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFS 441 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~ 441 (474)
.+......++.+.......+...+.+++..| ++++...+......++|..+||.+.|.+.|..+....+..+
T Consensus 305 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~ 376 (394)
T PRK10213 305 KIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLS 376 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHH
Confidence 2223333333444444445555567777777 56778888888888999999999999999943333333333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=278.01 Aligned_cols=397 Identities=17% Similarity=0.158 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHH
Q 011956 36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCI 115 (474)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 115 (474)
+.+.....++++.+.+.++.....+.+|.+.+++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34445556666677777777778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHH
Q 011956 116 IGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRIL 191 (474)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~ 191 (474)
++.++.++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+.++|..+++.+++.+ +||+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888766 89999
Q ss_pred HHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHH---HHHHHhhccchhHH------
Q 011956 192 ALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE---YTETLERLSEGGIL------ 262 (474)
Q Consensus 192 f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------ 262 (474)
|++..+..++.++....+||++++..++++.++..+..+.....+............ ............+.
T Consensus 177 f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (496)
T PRK03893 177 FFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGL 256 (496)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 987655555444445557777654332222111111111111000000000000000 00000000000000
Q ss_pred -------HH-hh-HhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHH-HcCCcc---hhHHHHHHHHHHHHHHHHHHHHh
Q 011956 263 -------EL-FQ-RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI-SAGFSG---SIGMIAMVVIQIPMTLLGVLLMD 329 (474)
Q Consensus 263 -------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d 329 (474)
.. .+ ++..++.........+...........++|.+++ ..+.+. +.......++.+++.++.|+++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d 336 (496)
T PRK03893 257 LCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD 336 (496)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0001111111111111111111123344555553 334443 46777788889999999999999
Q ss_pred hcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHH
Q 011956 330 KSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL 409 (474)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 409 (474)
|++||+.+..+..+..+..+.+.... ..............+....+..+....++.|.+|+++|++++|+
T Consensus 337 r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 406 (496)
T PRK03893 337 WLGTRKAYVCSLLISQLLIIPVFAIG----------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGF 406 (496)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhhcc----------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccch
Confidence 99999887666544444333222210 12222222222222233334455566788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHH
Q 011956 410 VTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSA 442 (474)
Q Consensus 410 ~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~ 442 (474)
.+....+|..++|.+.|.+.| .++...+...+.
T Consensus 407 ~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 407 TYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred hhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 999999999999999999998 343334434333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=273.59 Aligned_cols=338 Identities=12% Similarity=0.051 Sum_probs=242.7
Q ss_pred ccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011956 58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (474)
Q Consensus 58 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (474)
.++..|.+.+++|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|++.
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA 101 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh-hccCCC
Q 011956 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPES 212 (474)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~-~~~~~~ 212 (474)
|++.+..++.....+.+++| ++|+++.++...+.++|..+++++...+ +||+.|++.++..++..+.. ++++++
T Consensus 102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (377)
T TIGR00890 102 SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP 180 (377)
T ss_pred hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999888888889999997 5699999999999999987765555443 89999999888877755444 445544
Q ss_pred hhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhH
Q 011956 213 PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIA 292 (474)
Q Consensus 213 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (474)
|+.. .+++. +. +.++.+.++.++++..+......+........ ..
T Consensus 181 ~~~~-~~~~~---------------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 225 (377)
T TIGR00890 181 PGQL-IKTNI---------------EV---------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLL----LI 225 (377)
T ss_pred chhc-cccCc---------------cc---------------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHH----HH
Confidence 3210 00000 00 00011234455566655544444333332211 12
Q ss_pred hcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchH
Q 011956 293 FYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPF 369 (474)
Q Consensus 293 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (474)
.+.+.+.++.+.+. +.......++.++++++.|++.||++||+.+..+.....++.+.+.... ....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 295 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP----------MLND 295 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc----------cchh
Confidence 22233333334333 3566777888999999999999999999988877777666665554321 1111
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 011956 370 LALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFS 441 (474)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~ 441 (474)
..........+.......+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..++...+...
T Consensus 296 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~ 367 (377)
T TIGR00890 296 VLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVT 367 (377)
T ss_pred HHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Confidence 122222222333333344555678889999999999999999999999999999999999843333333333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=280.54 Aligned_cols=355 Identities=15% Similarity=0.087 Sum_probs=222.5
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 011956 56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRL 135 (474)
Q Consensus 56 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 135 (474)
....+..|.+.+|+|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|+
T Consensus 53 ~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~ 132 (476)
T PLN00028 53 FAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRF 132 (476)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHh----c---------cchhhHHHHHhHHHHHHH
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----A---------FLNWRILALIGTIPCLVQ 202 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~----~---------~l~wr~~f~~~~~~~~~~ 202 (474)
++|++.+.. +....+++|++|+++|++++++.+...++|..+++.+. . ..|||+.|++.+++.++.
T Consensus 133 l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~ 211 (476)
T PLN00028 133 FIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIM 211 (476)
T ss_pred HHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence 999998865 44566889999999999999998766666655554332 2 137999999988888776
Q ss_pred HHHhhccCC-ChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHH
Q 011956 203 LIGLCFIPE-SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMV 281 (474)
Q Consensus 203 ~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (474)
.+..+++++ .|+. +.++.. ++. + .++......+++.++++..+...+..+...
T Consensus 212 ~l~~~~~~~~~p~~-----~~~~~~-------~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (476)
T PLN00028 212 GILVLTLGQDLPDG-----NYRELK-------KSG-T-------------MPKDSFSKVLRYGVTNYRTWILALTYGYSF 265 (476)
T ss_pred HHHHHHHcCcCCCC-----chhhHH-------hcC-c-------------cccccHHHHHHHHHcCchhHHHHHHHHHHH
Confidence 555555443 3320 000000 000 0 000000112344555666555554444333
Q ss_pred HHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCccee----eehhhhHHHHHHHHHHH
Q 011956 282 LQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLL----LVSAAGTCLGCLLAALS 354 (474)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~----~~~~~~~~~~~~~~~~~ 354 (474)
........+.+.|+.. ..+.+. +.......++.++++++.|+++||++||+.. ........+..+.....
T Consensus 266 ~~~~~~~~~~p~~l~~---~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~ 342 (476)
T PLN00028 266 GVELTMDNIIAEYFYD---RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL 342 (476)
T ss_pred HHHHHHHhHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh
Confidence 3333233334444322 224443 3667778889999999999999999876321 11111111111111111
Q ss_pred hhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hc
Q 011956 355 FLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SS 433 (474)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~-~~ 433 (474)
... .+.........+ .+.......+..+++..+..| +++|++.|+.+...++|+.++|.+.+ ..+. ++
T Consensus 343 ~~~--------~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y 411 (476)
T PLN00028 343 GRA--------NSLGAAIVVMIL-FSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYST 411 (476)
T ss_pred ccc--------chHHHHHHHHHH-HHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccH
Confidence 000 111112222222 222222223334456667655 78999999998888888888887764 1122 24
Q ss_pred cchhHHHHHHHHHHHHhh
Q 011956 434 TGTFFAFSAICSLTVLFV 451 (474)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~ 451 (474)
...+++.+++.++.+++.
T Consensus 412 ~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 412 ETGISLMGVMIIACTLPV 429 (476)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445555555544444443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=276.80 Aligned_cols=375 Identities=19% Similarity=0.183 Sum_probs=259.1
Q ss_pred cccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 011956 55 IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGR 134 (474)
Q Consensus 55 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 134 (474)
....+...|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++..++++++|++.++++|
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILR 89 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 34446677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh-hcc
Q 011956 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFI 209 (474)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~-~~~ 209 (474)
+++|++.+...+...+++.|++|+++|++++++.+....+|.++++.+++.+ +||+.|++.++..++..+.. ++.
T Consensus 90 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999999999999999999999999999999998875 89999999888777654444 456
Q ss_pred CCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccch
Q 011956 210 PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN 289 (474)
Q Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (474)
||+|+..... +.++.....++...+ ...++.++.+....++.++++..+...+..++..........
T Consensus 170 ~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (399)
T TIGR00893 170 PDPPQKAKWL-TEEEKYIVVGGLLAE------------QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLT 236 (399)
T ss_pred cCCCCccccC-CHHHHhhcchhhccc------------cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHH
Confidence 6655321100 111000000000000 000111122334566777777777666666665555444444
Q ss_pred hhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehh-hhHHHHHHHHHHHhhhcccccccccch
Q 011956 290 GIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSA-AGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
..+.|.....+......+.......++.+++.++.+++.||++||+...... ....++.+........... ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 311 (399)
T TIGR00893 237 WFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY-----VNI 311 (399)
T ss_pred HHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc-----chh
Confidence 4454544433333333456777788889999999999999999986322211 1111221111111110000 112
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-h-ccchhHHHHHHHHH
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-S-STGTFFAFSAICSL 446 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~-~-~~~~~~~~~~~~~~ 446 (474)
......... .+.+..+..+..+++..|..|+++|+++.|+.+...++|..++|.+.|.+.|. + +...+.+.+.+.++
T Consensus 312 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~ 390 (399)
T TIGR00893 312 PYAALALVA-LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALI 390 (399)
T ss_pred HHHHHHHHH-HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHH
Confidence 222222222 23333336778889999999999999999999999999999999999999994 4 33344444444433
Q ss_pred HH
Q 011956 447 TV 448 (474)
Q Consensus 447 ~~ 448 (474)
..
T Consensus 391 ~~ 392 (399)
T TIGR00893 391 GA 392 (399)
T ss_pred HH
Confidence 33
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=271.25 Aligned_cols=368 Identities=16% Similarity=0.099 Sum_probs=262.3
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 011956 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (474)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 113 (474)
+++.++..+.+.+..+...++.+...|.+|.+.+++|.|..+.++..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 46677778888888888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhh
Q 011956 114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWR 189 (474)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr 189 (474)
.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+.+++......+|..++|.+++.+ +||
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999999988899999999999999999999999888888889998887665 899
Q ss_pred HHHHHhHHHHHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHh
Q 011956 190 ILALIGTIPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK 268 (474)
Q Consensus 190 ~~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (474)
+.|++.++..++..+. .+..||+++... +. . . . ++...++++.++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-------------~-------~--------~~~~~~~~~~~~~~ 215 (406)
T PRK15402 168 GMFVLFAALAALSFFGLWRAMPETAGRVG---EK-L-------------S-------L--------KELGRDYKLVLKNR 215 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccc---cc-c-------------c-------H--------HHHHHHHHHHHcCc
Confidence 9999988877765443 345676642100 00 0 0 0 00112345566677
Q ss_pred hHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHH
Q 011956 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTC 345 (474)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 345 (474)
.++...+...+............|.+.... .+.+. +.......++.+++.++.+++.||+++|+.+..+.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~ 292 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISG---EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMV 292 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 666555544444333222222234333322 23333 344455566788899999999999999998877777666
Q ss_pred HHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011956 346 LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 425 (474)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 425 (474)
++...+....... ...........++.+.......+......... +++++|++.++.+....++..+|+.+.
T Consensus 293 ~g~~~~~~~~~~~-------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~ 364 (406)
T PRK15402 293 AGLLLAALATVIS-------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELS 364 (406)
T ss_pred HHHHHHHHHHHcc-------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555432110 11222222222223322223333433444333 448999999999999999999999999
Q ss_pred HHHHhhhccchhHHHHHHH
Q 011956 426 NFLMKWSSTGTFFAFSAIC 444 (474)
Q Consensus 426 g~~~~~~~~~~~~~~~~~~ 444 (474)
+.+.+......+....+++
T Consensus 365 ~~l~~~~~~~~~~~~~~~~ 383 (406)
T PRK15402 365 KHAYLGGGNGLFNLFNLAN 383 (406)
T ss_pred HhcccCCchHHHHHHHHHH
Confidence 9998844444333333333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=269.60 Aligned_cols=344 Identities=15% Similarity=0.156 Sum_probs=237.2
Q ss_pred HHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 011956 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 123 (474)
..+..+..+.......+.+|.+++|+|.+.++.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~ 87 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL 87 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHH
Q 011956 124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (474)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~ 199 (474)
++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++++++.+ +||+.|++.++..
T Consensus 88 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~ 167 (382)
T PRK10091 88 SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFN 167 (382)
T ss_pred hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHH
Confidence 999999999999999999998888899999999999999999999999999999999887766 8999999988876
Q ss_pred HHHHH-HhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHH
Q 011956 200 LVQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (474)
Q Consensus 200 ~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (474)
++..+ ..+++||.++. .+. + . . . ..+.++++..+.......
T Consensus 168 ~~~~~~~~~~lp~~~~~----~~~-~--------------~----------~--------~-~~~~~~~~~~~~~~~~~~ 209 (382)
T PRK10091 168 IAVLASIYFWVPDIRDE----AKG-G--------------L----------R--------E-QFHFLRSPAPWLIFAATM 209 (382)
T ss_pred HHHHHHHHHhCCCCCcc----ccc-C--------------H----------H--------H-HHHHhcChHHHHHHHHHH
Confidence 66444 34557775320 000 0 0 0 0 011233443333332222
Q ss_pred HHHHHhhccchhhHhcHHHHH-HHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHH
Q 011956 279 LMVLQQFGGVNGIAFYASSIF-ISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354 (474)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (474)
+...... . ...|.+.++ +..+.+. +.......++.++++++.+++.||+++|+.+..+..+.+++.+.+...
T Consensus 210 ~~~~~~~---~-~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~ 285 (382)
T PRK10091 210 FGNAGVF---A-WFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF 285 (382)
T ss_pred HHHHHHH---H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 2221111 1 112222223 2334443 366777888999999999999999999998877776666665544321
Q ss_pred hhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhc
Q 011956 355 FLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSS 433 (474)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~ 433 (474)
. ...+.......+...+......+.......+..|++.++.+ ..+...++|..+||.+.|.+.| .++
T Consensus 286 ~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~ 353 (382)
T PRK10091 286 G----------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLA 353 (382)
T ss_pred H----------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccC
Confidence 1 12222222222222222222222222344454454555544 3467788999999999999999 344
Q ss_pred cchhHHHH
Q 011956 434 TGTFFAFS 441 (474)
Q Consensus 434 ~~~~~~~~ 441 (474)
+...+...
T Consensus 354 ~~~~~~~~ 361 (382)
T PRK10091 354 YNYVALPA 361 (382)
T ss_pred cchHHHHH
Confidence 44444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=271.46 Aligned_cols=348 Identities=20% Similarity=0.211 Sum_probs=225.6
Q ss_pred HHHHHHHHHHhhccccccccccccccccccCCChhhHHHH-HHHH-----HHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 011956 40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLF-GSIL-----TIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (474)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~-~s~~-----~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 113 (474)
....++++.+.+.++...+++..|.+.+|++.++.+.+.+ .+.. .++..+++++.|+++||+|||++++.+.++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 4666777888888889888999999999999988776544 3332 223347899999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHH--------HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 011956 114 CIIGWVIIVFSKAAWW--------LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF 185 (474)
Q Consensus 114 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 185 (474)
+++++++++++++++. ++++|+++|++.+...+....+++|++|+++|++++++...+.++|..+++.++..
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 68899999999999999999999999999999999999988877777666655543
Q ss_pred ------------chhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Q 011956 186 ------------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETL 253 (474)
Q Consensus 186 ------------l~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (474)
.|||++|++..+...+........||++++..+++
T Consensus 176 l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~--------------------------------- 222 (434)
T PRK15075 176 LNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH--------------------------------- 222 (434)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh---------------------------------
Confidence 38999999755443222222222344322110000
Q ss_pred hhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHH-cCCcc---hhHHHHHHHHHHHHHHHHHHHHh
Q 011956 254 ERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLGVLLMD 329 (474)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d 329 (474)
+...+..+++..+++..+.. .. ...+........+..|.|.++++ .+.+. ........++.+++.++.|+++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D 299 (434)
T PRK15075 223 RPSMREIFRSLAANWRIVLA--GM-LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD 299 (434)
T ss_pred ccccccHHHHHHHhHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001112222222222211 11 11111122233455556665543 34433 35566677888899999999999
Q ss_pred hcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHH
Q 011956 330 KSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL 409 (474)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 409 (474)
|++||+....+.....+......... .. ............+.+.......+....+..|.+|++.|+++.++
T Consensus 300 r~g~r~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~ 371 (434)
T PRK15075 300 RIGRRPVLIAFTVLAILTAYPALSWL-VA-------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSL 371 (434)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHH-Hc-------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeH
Confidence 99999877655433322111111000 00 11111111111122222223344455788999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhh
Q 011956 410 VTLVSW-LGSWIISFTFNFLMKW 431 (474)
Q Consensus 410 ~~~~~~-~g~~i~~~i~g~~~~~ 431 (474)
.+.... +++.++|.+.|.+.|.
T Consensus 372 ~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 372 AYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHh
Confidence 766555 4588899999999984
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=269.84 Aligned_cols=354 Identities=19% Similarity=0.189 Sum_probs=239.0
Q ss_pred Hhhccccccccccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh---
Q 011956 49 YVFGSAIGYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--- 124 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--- 124 (474)
+....+.++..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++.+.++++
T Consensus 25 ~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 104 (399)
T PRK05122 25 FISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLL 104 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhh
Confidence 3334445555677775 678999999999999999999999999999999999999999999999988887766553
Q ss_pred -----hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHh
Q 011956 125 -----KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIG 195 (474)
Q Consensus 125 -----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~ 195 (474)
.+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+ |||+.+++.
T Consensus 105 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 105 AAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred hccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 25778999999999999999999999999999999999999999999999999988888766 899988876
Q ss_pred HHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHH
Q 011956 196 TIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV 275 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (474)
++..++..+.....|++++ .+. + +.++++.+++. +....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~-----~~~-~---------------------------------~~~~~~~~~~~--~~~~~ 223 (399)
T PRK05122 185 MLLALLGLLLARPRPAVPP-----VKG-E---------------------------------RLPFRRVLGRV--WPYGM 223 (399)
T ss_pred HHHHHHHHHHHhcCCCCCC-----CCc-c---------------------------------chhHHHHHHHH--HHHHH
Confidence 6665544433332333221 000 0 00011111111 11111
Q ss_pred HHHHHHHHhhccchhhHhcHHHHHHHcCC-cchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHH
Q 011956 276 GVGLMVLQQFGGVNGIAFYASSIFISAGF-SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (474)
...+...... ....+.+.++.+.+. ..+.......++.+++.++.+++.||+++|+.+..+..+..++...+...
T Consensus 224 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T PRK05122 224 GLALASIGFG----TIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA 299 (399)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 1111112111 122233333333333 23355667778888999999999999999988777766666665554432
Q ss_pred hhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hc
Q 011956 355 FLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SS 433 (474)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~-~~ 433 (474)
.+.+ ......++.+.......+.......|..|+++|+++.|+.+...++|..++|.+.|.+.+. ++
T Consensus 300 -----------~~~~-~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 367 (399)
T PRK05122 300 -----------PSPW-MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGY 367 (399)
T ss_pred -----------ccHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 2222 2233333333333344455556677888999999999999999999999999999999984 44
Q ss_pred cchhHHHHHHHHHHHHhhheeCcCCCC
Q 011956 434 TGTFFAFSAICSLTVLFVAKLVPETKG 460 (474)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (474)
...+...+.++.+. .+.....+++++
T Consensus 368 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 393 (399)
T PRK05122 368 PSIFLAAALAALLG-LALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhccccc
Confidence 44444444444443 333333444333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=276.53 Aligned_cols=370 Identities=12% Similarity=0.058 Sum_probs=248.7
Q ss_pred chhHHHHHHHHHHHHHHhhcccccccccccccccc----------------------ccCCChhhHHHHHHHHHHHHHHH
Q 011956 33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITN----------------------DLGLSVAEYSLFGSILTIGAMIG 90 (474)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~g~~~s~~~l~~~~~ 90 (474)
.++.....+++....++.++.+.+. ..+.+.+ |++++..+.|++.+.+.+++.++
T Consensus 16 ~r~~i~~~~~~~~~~~y~dr~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 16 FRLFLSFLLHICNVIIIAQRICLSL---TMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhheE---EEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 3455555555555555666666644 4444544 79999999999999999999999
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHH
Q 011956 91 AIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVH 168 (474)
Q Consensus 91 ~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 168 (474)
+++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999887554 56888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHHHHHHHhh-ccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHH
Q 011956 169 QLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLC-FIPESPRWLAKTGKGIESEAALQRLRGADADISEE 242 (474)
Q Consensus 169 ~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (474)
..+..+|.++++++++.+ +||+.|++.++++++..+.++ +.+|+|+.... ..++.++..++..
T Consensus 173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~i~~~~--------- 241 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC--ISKFEKKYINSSL--------- 241 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC--CCHHHHHHHHhhc---------
Confidence 999999999999887655 899999999888877655554 45666642111 1111101000000
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHH
Q 011956 243 AAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTL 322 (474)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (474)
..+..+...+.+++++++++..+...+..+...........++|.|+.+.++......+.......++.+++.+
T Consensus 242 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~ 315 (465)
T TIGR00894 242 ------QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSI 315 (465)
T ss_pred ------ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHH
Confidence 00000111234578888888877777666665555444444444444443333333445777778889999999
Q ss_pred HHHHHHhhcCCcceeeeh---hhhHHHHHH---HHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcc
Q 011956 323 LGVLLMDKSGRRPLLLVS---AAGTCLGCL---LAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSE 396 (474)
Q Consensus 323 ~~g~l~d~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (474)
+.|+++||+++|+..... .....++.. ...+..... .......+....+.++......+.......|
T Consensus 316 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 388 (465)
T TIGR00894 316 FAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL-------SAAFYLTIIILTLANAVSSGPLAGVLINSLD 388 (465)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHHhhhhhhhhhhchhh
Confidence 999999998755432211 111111111 111110000 1112222222223333332333344455667
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 397 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 397 ~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
..| +.+|.+.|+.+....+++.++|.+.|.+.+
T Consensus 389 ~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~ 421 (465)
T TIGR00894 389 LAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS 421 (465)
T ss_pred cCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence 776 589999999999999999999999998876
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=276.36 Aligned_cols=372 Identities=15% Similarity=0.074 Sum_probs=265.2
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHH
Q 011956 56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-----SKAAWWL 130 (474)
Q Consensus 56 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l 130 (474)
+...+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+..+. .++++.+
T Consensus 34 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (417)
T PRK10489 34 GLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAI 113 (417)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 34456777788899999999999999999999999999999999999999999988888877665543 5678999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh
Q 011956 131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL 206 (474)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 206 (474)
++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+ +||+.|++.++..++..+..
T Consensus 114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999998876 89999998887777766666
Q ss_pred hccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhc
Q 011956 207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286 (474)
Q Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (474)
+.+|++++.. +++. +. . +.....++..++++..+...+..++... ...
T Consensus 194 ~~l~~~~~~~--~~~~---------------~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 241 (417)
T PRK10489 194 LRLPALPPPP--QPRE---------------HP---L-----------RSLLAGFRFLLASPVVGGIALLGGLLTM-ASA 241 (417)
T ss_pred HhCCCCCCCC--cccc---------------cc---h-----------HHHHHHHHHHHcChHHHHHHHHHHHHHH-HHh
Confidence 6677654210 0000 00 0 0001123344555555444433332222 122
Q ss_pred cchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccccccc
Q 011956 287 GVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKA 366 (474)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (474)
.....+.|....++......+.......++.+++.++.+++.||.++++.+..+..+.+++.+.+.. .
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~------------~ 309 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL------------M 309 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc------------c
Confidence 2233344443323222233446677788889999999999999877777666666655555544433 2
Q ss_pred chHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHH
Q 011956 367 TPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICS 445 (474)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~ 445 (474)
.+........++.+.......+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+ .+....+...+++..
T Consensus 310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~ 389 (417)
T PRK10489 310 PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLL 389 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 2222223333333333333345556788999999999999999999999999999999999999 455566666777767
Q ss_pred HHHHhhheeCcCCCCCCHHHHHhhcC
Q 011956 446 LTVLFVAKLVPETKGRTLEEIQASMN 471 (474)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (474)
+.+++.....++.|+++++|.+++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (417)
T PRK10489 390 IIGVLLLLVLGELRRFRQTPPEVDAS 415 (417)
T ss_pred HHHHHHHHhcccccccccccccCCCC
Confidence 76777777778888877777666544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=272.63 Aligned_cols=360 Identities=13% Similarity=0.103 Sum_probs=248.4
Q ss_pred HHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 011956 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120 (474)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 120 (474)
....+++.+..+......++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l 88 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAG 88 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33445556666666677788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHh
Q 011956 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIG 195 (474)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~ 195 (474)
+++++|++.+++.|+++|++.+...+...+++.|++|+++|+++++..+...++|..++|.+.+.+ +||+.|++.
T Consensus 89 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~ 168 (394)
T PRK03699 89 LMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACI 168 (394)
T ss_pred HHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888888888888776543 899999988
Q ss_pred HHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHH
Q 011956 196 TIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV 275 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (474)
+++.++..+..++ .+.|+.. +++.+ ++ ++..+ +.+ ++..+...+
T Consensus 169 ~~~~~~~~~~~~~-~~~p~~~--~~~~~-----------~~-----------------~~~~~----~~~-~~~~~~~~~ 212 (394)
T PRK03699 169 GLVYVAIFILTLF-SEFPALG--KHAPK-----------AD-----------------KPVAK----EKW-GIGVLFLAI 212 (394)
T ss_pred HHHHHHHHHHHHh-cCCcccc--ccCcc-----------cc-----------------Ccccc----ccC-ChHHHHHHH
Confidence 8776665444332 2222200 00000 00 00000 001 222233333
Q ss_pred HHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHh
Q 011956 276 GVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (474)
..++..........+.|.|..+.++.+....+.......++..+++++.++++||+++|+.+.....+..+....+..
T Consensus 213 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-- 290 (394)
T PRK03699 213 AALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN-- 290 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH--
Confidence 333333333333334444443332222223346667777889999999999999999998876655544443333322
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhcc
Q 011956 356 LFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSST 434 (474)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~ 434 (474)
..+........+..+.......+...+...|..| +.++...+......++|..++|.+.|.+.| .+..
T Consensus 291 ----------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~ 359 (394)
T PRK03699 291 ----------TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ 359 (394)
T ss_pred ----------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch
Confidence 1122222223333344344445555566777666 556788899999999999999999999998 4555
Q ss_pred chhHHHHHHHHHHHH
Q 011956 435 GTFFAFSAICSLTVL 449 (474)
Q Consensus 435 ~~~~~~~~~~~~~~~ 449 (474)
..++..++++.+..+
T Consensus 360 ~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 360 AALLTANGLYAVVFV 374 (394)
T ss_pred hhhhhhHHHHHHHHH
Confidence 555555555444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=259.79 Aligned_cols=370 Identities=15% Similarity=0.084 Sum_probs=251.5
Q ss_pred chhHHHHHHHHHHHHHHhhcccccccccccccccc-ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHH
Q 011956 33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITN-DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD 111 (474)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~ 111 (474)
..++......+.....|...+.. +++.+.+.+ |+|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~---~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ 107 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLF---SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFST 107 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 34455555555555555554444 666666665 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHH----HHHH
Q 011956 112 IVCIIGWVIIVFS-----KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSM----TYLI 182 (474)
Q Consensus 112 ~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~----~~~l 182 (474)
+++++.++..+++ +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+ +|.+
T Consensus 108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~ 186 (462)
T PRK15034 108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV 186 (462)
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999987 8999999999999998 6688999999999999999999999996666666554 4433
Q ss_pred hc------------------cchhhHHHHHhHHHHHHHHHHh-hccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHH
Q 011956 183 GA------------------FLNWRILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEA 243 (474)
Q Consensus 183 ~~------------------~l~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (474)
.. ..+||.++++.+++.++..+.. ++.++.|+
T Consensus 187 i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----------------------------- 237 (462)
T PRK15034 187 IFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----------------------------- 237 (462)
T ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----------------------------
Confidence 21 1248888888777776655444 44444331
Q ss_pred HHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Q 011956 244 AEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLL 323 (474)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (474)
++.+..+.++.+|++..|...+.+++.+..+.+....+|+|....+. ............+...+.+++
T Consensus 238 ----------~~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rpl 305 (462)
T PRK15034 238 ----------SRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSV 305 (462)
T ss_pred ----------cccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHh
Confidence 01112335567788888888887777666655555555655544331 111112234445778888999
Q ss_pred HHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCC---
Q 011956 324 GVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPI--- 400 (474)
Q Consensus 324 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--- 400 (474)
+|+++||+|+++++.++.+.+.++...+........ ..+.......++......+..+...+-.+.+.+|+
T Consensus 306 gG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~------~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~ 379 (462)
T PRK15034 306 GGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTG------SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITI 379 (462)
T ss_pred hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcccc------ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhh
Confidence 999999999999998888776666544333221100 11222222222222222222233444566666663
Q ss_pred ------------------CchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccc-hhHHHHHHHHHHHHhhhe
Q 011956 401 ------------------NMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTG-TFFAFSAICSLTVLFVAK 453 (474)
Q Consensus 401 ------------------~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 453 (474)
++.|.+.|+....+.+|+++.|.+.|...+ .+.+. .++.+.+..+++.++.+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 380 YRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred hcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 267899999999999999999999999888 33333 344444444444444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=259.50 Aligned_cols=341 Identities=16% Similarity=0.149 Sum_probs=231.2
Q ss_pred ccccccccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH--------h
Q 011956 54 AIGYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF--------S 124 (474)
Q Consensus 54 ~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------~ 124 (474)
..++..|.+|. +.+|+|.|.++.|++.+++.+++.++++++|+++||+|||+++..+.+...++.+.... .
T Consensus 30 ~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (392)
T PRK12382 30 TVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAP 109 (392)
T ss_pred HHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence 34555677774 67899999999999999999999999999999999999999999998887776543321 3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHH
Q 011956 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL 200 (474)
Q Consensus 125 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~ 200 (474)
+|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+ |||+.+.+..+..+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~ 189 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPL 189 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 58899999999999999998999999999999999999999999999999999999988765 89987776555443
Q ss_pred HHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHH
Q 011956 201 VQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLM 280 (474)
Q Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (474)
+........||.++. +++ +.+.++.++. .+...+...+.
T Consensus 190 ~~~~~~~~~~~~~~~---~~~------------------------------------~~~~~~~~~~--~~~~~~~~~l~ 228 (392)
T PRK12382 190 LAWAFNGTVRKVPAH---AGE------------------------------------RPSLWSVVGL--IWKPGLGLALQ 228 (392)
T ss_pred HHHHHHHhccCCCCC---ccc------------------------------------CchHHHHHHH--HHHhHHHHHHH
Confidence 333322223332210 000 0001111111 00111111111
Q ss_pred HHHhhccchhhHhcHHHHHHHcCCc-chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcc
Q 011956 281 VLQQFGGVNGIAFYASSIFISAGFS-GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQD 359 (474)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (474)
.... .....+.+.++.+.+.+ .+.......++.+++.+..|++.||+++|+.+..+..+..++.+.+...
T Consensus 229 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----- 299 (392)
T PRK12382 229 GVGF----AVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA----- 299 (392)
T ss_pred HHHH----hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----
Confidence 1111 11222333333333433 2355556667788899999999999999999887777766666554432
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhH
Q 011956 360 LQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFF 438 (474)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~-~~~~~~~ 438 (474)
.+.........+.+.......+.......|..|+++||++.|+.+...++|..++|.+.|.+.|. ++...+.
T Consensus 300 -------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~ 372 (392)
T PRK12382 300 -------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFL 372 (392)
T ss_pred -------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 22222222233333333334555567778888999999999999999999999999999999994 4444444
Q ss_pred HHHHHHHHHHHhh
Q 011956 439 AFSAICSLTVLFV 451 (474)
Q Consensus 439 ~~~~~~~~~~~~~ 451 (474)
..+.+.++..++.
T Consensus 373 ~~~~~~~~~~~~~ 385 (392)
T PRK12382 373 AGAISAVLGIIVT 385 (392)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=273.85 Aligned_cols=374 Identities=19% Similarity=0.139 Sum_probs=260.3
Q ss_pred HHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 011956 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 123 (474)
++++.+....+.+...+.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+..+.+++.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 94 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL 94 (471)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHH
Q 011956 124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (474)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~ 199 (474)
+++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+ +||+.|++..+..
T Consensus 95 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 95 SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG 174 (471)
T ss_pred hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998776 8999999988776
Q ss_pred HHHHHHh-hccCCChhHHHhcCChhHHHHHHH---------HHhCCCc--chHHHHHH----------HHHHHHHHhhcc
Q 011956 200 LVQLIGL-CFIPESPRWLAKTGKGIESEAALQ---------RLRGADA--DISEEAAE----------IREYTETLERLS 257 (474)
Q Consensus 200 ~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~ 257 (474)
.+..+.. ...|+.+. .+.+.+....... ...+... ........ ....++...+.+
T Consensus 175 ~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (471)
T PRK10504 175 IIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRA 251 (471)
T ss_pred HHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6654443 44454432 1112222111100 0011100 00000000 000011111111
Q ss_pred chhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCccee
Q 011956 258 EGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLL 337 (474)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 337 (474)
..+ .++++++.+.......++............++|.+...+......++......++.+++.++.+++.||+++|+.+
T Consensus 252 ~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~ 330 (471)
T PRK10504 252 LFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL 330 (471)
T ss_pred ccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 112 3577788777766666665554443344455555543333333344666677777888889999999999999998
Q ss_pred eehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHH
Q 011956 338 LVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLG 417 (474)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 417 (474)
..+..+..+...++.+... ..+........+..+.......+.......+..|++.++.++|+.++...+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 401 (471)
T PRK10504 331 VATTLGLALVSLLFMLVAL---------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLS 401 (471)
T ss_pred HHHHHHHHHHHHHHHhccc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHH
Confidence 8777766666555443210 1112222222222223223334455677778889999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 011956 418 SWIISFTFNFLMK 430 (474)
Q Consensus 418 ~~i~~~i~g~~~~ 430 (474)
..+|+.+.|.+.+
T Consensus 402 ~~ig~~i~g~ll~ 414 (471)
T PRK10504 402 MSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999988
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=272.54 Aligned_cols=412 Identities=21% Similarity=0.210 Sum_probs=294.3
Q ss_pred HHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 011956 42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 121 (474)
...+........+....++..+ .+.+..+.....+..+++++|..+|++++|+++||+|||++++.++++..++.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~ 165 (521)
T KOG0255|consen 88 IVICLDGWVYDYGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT 165 (521)
T ss_pred cccccceeEecCCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH
Confidence 3333333333333433333322 35667788889999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc--hhhHHHHHhHHHH
Q 011956 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPC 199 (474)
Q Consensus 122 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l--~wr~~f~~~~~~~ 199 (474)
++++|++.+++.|+++|++.+........++.|++++++|+.+..+ ......+..++++.++++ +||+.+++..++.
T Consensus 166 a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~ 244 (521)
T KOG0255|consen 166 AFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPS 244 (521)
T ss_pred HHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 666666666666666666 8999999999999
Q ss_pred HHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCc---chHHHHHHHHHHH--HHHhhccchhHHHHhhHhhHHHHH
Q 011956 200 LVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADA---DISEEAAEIREYT--ETLERLSEGGILELFQRKYAHSLI 274 (474)
Q Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 274 (474)
++.++.+++.||+|||+..+++.+++.+.+++..+.|. ...+......... ......++..+.++++.+..+...
T Consensus 245 ~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 324 (521)
T KOG0255|consen 245 GLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRT 324 (521)
T ss_pred HHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHH
Confidence 88877777778999999999999999999998876541 2211111111111 111122335578888887655555
Q ss_pred HHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHH
Q 011956 275 VGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354 (474)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (474)
+...+.++.....++.+... ....+.+........+.....+....+...|+.|||.....+.....++++...+.
T Consensus 325 ~~~~~~~~~~~~~y~gl~~~----~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~ 400 (521)
T KOG0255|consen 325 LYLLFIWFVFSLVYYGLSLN----VSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWL 400 (521)
T ss_pred HHHHHHHHHHhHHHHhhhhh----hhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh
Confidence 55544443222222222221 12234444466666666777888888899999999999999988888888888775
Q ss_pred hhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011956 355 FLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSST 434 (474)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~ 434 (474)
... ...+.......+...+.. ......+.+..|++|+..|..+.+..+....+|++++|.+.-........
T Consensus 401 ~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~ 471 (521)
T KOG0255|consen 401 PDD--------LGGWLHWILPLLGKFFIG-SAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPL 471 (521)
T ss_pred hcc--------chhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 421 110112222222222222 23334479999999999999999999999999999999998655553222
Q ss_pred chhHHHHHHHHHHHHhhheeCcCCCCCCHHHHHhh
Q 011956 435 GTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQAS 469 (474)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
....+++....+.+.+...++||++++.+.+..++
T Consensus 472 ~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 472 LGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred chHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence 33333466666666666688999998876554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=269.94 Aligned_cols=394 Identities=15% Similarity=0.111 Sum_probs=249.1
Q ss_pred HHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 011956 43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV 122 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 122 (474)
...+................|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~ 109 (438)
T TIGR00712 31 GIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG 109 (438)
T ss_pred HHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHh
Confidence 3333333333333333445666665 599999999999999999999999999999999999999999999999988877
Q ss_pred Hh----hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHH
Q 011956 123 FS----KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILAL 193 (474)
Q Consensus 123 ~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~ 193 (474)
+. ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++++.+.. +||+.|+
T Consensus 110 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~ 189 (438)
T TIGR00712 110 FVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALY 189 (438)
T ss_pred ccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHH
Confidence 64 46778889999999999999998999999999999999999999999999999888765432 8999999
Q ss_pred HhHHHHHHH-HHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchh-HHHHhhHhhHH
Q 011956 194 IGTIPCLVQ-LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGG-ILELFQRKYAH 271 (474)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 271 (474)
+.+++.++. ++.++++||+|+....++..++ +++..+...+ + .+. +...++. .+..++++.++
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~----~~~-~~~~~~~~~~~~~~~~~~~ 254 (438)
T TIGR00712 190 FPAICAIIVALFAFAMMRDTPQSCGLPPIEEY--------RNDYPDDYNE--K----AEQ-ELTAKEIFMQYVLPNKLLW 254 (438)
T ss_pred HHHHHHHHHHHHHHHhccCCHHhcCCCCchhc--------cccccccccc--c----ccc-ccchHHHHHHHHccCchHH
Confidence 988887764 4455667887653211110000 0000000000 0 000 0000011 12355667666
Q ss_pred HHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHH
Q 011956 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLA 351 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 351 (474)
...+...+.....+....+.|.|+....+......+.......+.++++.++.|++.||+++++....+........+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 334 (438)
T TIGR00712 255 YIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAV 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHH
Confidence 66555555444433333444444443222222334466777888899999999999999975443333332222221111
Q ss_pred HHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 011956 352 ALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS-WIISFTFNFLMK 430 (474)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~~i~g~~~~ 430 (474)
..... .. ..+........+..+....+..........|.+|++.|+++.|+.+...++|+ +++|.+.|.+.|
T Consensus 335 ~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~ 407 (438)
T TIGR00712 335 IVYWM-NP------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 407 (438)
T ss_pred HHHHh-cC------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH
Confidence 11110 00 11111111112222222112112222456788999999999999999988875 689999999999
Q ss_pred -hhccchhHHHHHHHHHHHHhhheeCcCCC
Q 011956 431 -WSSTGTFFAFSAICSLTVLFVAKLVPETK 459 (474)
Q Consensus 431 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (474)
.++...+.+..++.++..+..++..+|.|
T Consensus 408 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 408 FFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44445555556555565555556666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=269.20 Aligned_cols=373 Identities=20% Similarity=0.241 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH
Q 011956 39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW 118 (474)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 118 (474)
.......+..+..+++.....+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 96 (398)
T TIGR00895 17 RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT 96 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444444555555556666778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHH
Q 011956 119 VIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALI 194 (474)
Q Consensus 119 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~ 194 (474)
++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ +||+.|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 97 LLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred HHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999888766 89999998
Q ss_pred hHHHHHH-HHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHH
Q 011956 195 GTIPCLV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSL 273 (474)
Q Consensus 195 ~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (474)
.++..++ ..+...++||++++..++ +.++..+..++.........++ ..++. +..++..+...+..++++..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 252 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQ-KATQGTKRSVFKALFQGKTARIT 252 (398)
T ss_pred hhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--ccccc-ccccchhhHHHHHHhcchhHHHH
Confidence 8655554 445556788887665444 2222222222221111000000 00000 00000011112222222222221
Q ss_pred HHHHHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHH
Q 011956 274 IVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLL 350 (474)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 350 (474)
... .+..............+.+.+.+..+.+. +.......++.+++.++.+++.||+++|+.. ....+..+....
T Consensus 253 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 330 (398)
T TIGR00895 253 VLL-WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVL 330 (398)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHH
Confidence 111 11111112223334445555455444443 3667777888999999999999999988433 333332222222
Q ss_pred HHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 351 AALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 428 (474)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~ 428 (474)
+.... .... ......++.+.......+...++..|.+|+++|+++.|+.+....+|..++|.+.|.+
T Consensus 331 ~~~~~----------~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 331 VGSTL----------FSPT-LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHh----------hCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 22110 1222 2233333344444455667789999999999999999999999999999999999875
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=259.44 Aligned_cols=367 Identities=12% Similarity=0.069 Sum_probs=248.1
Q ss_pred HHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 011956 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120 (474)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 120 (474)
.....+..+....+.....|.+|.+.+++|.+.++.++..+++.+++.++++++|+++||+|||+++..+.+++++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 97 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA 97 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 33345555666677788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhH
Q 011956 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGT 196 (474)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~ 196 (474)
+++++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|++.+
T Consensus 98 ~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 98 TLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999877777888899999999999999999999999999999998766 8999999988
Q ss_pred HHHHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHH
Q 011956 197 IPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV 275 (474)
Q Consensus 197 ~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (474)
+..++..+. ++.+||+++. +++.. +. +....+++++++++.++...+
T Consensus 178 ~~~~i~~~~~~~~lp~~~~~---~~~~~--------------~~---------------~~~~~~~~~ll~~~~~~~~~l 225 (413)
T PRK15403 178 VMGLIAFVGLLLAMPETVKR---GAVPF--------------SA---------------KSVLRDFRNVFRNRLFLTGAA 225 (413)
T ss_pred HHHHHHHHHHHHhCCCCccc---cCCCC--------------Ch---------------HHHHHHHHHHHcCHHHHHHHH
Confidence 887775544 4557886431 00000 00 001123556777888777666
Q ss_pred HHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHh
Q 011956 276 GVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (474)
...+............|.+....++......++.......+.+++..+.+++.++..+++.......+..++.+++....
T Consensus 226 ~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~ 305 (413)
T PRK15403 226 TLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGN 305 (413)
T ss_pred HHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 65555554443334444444433222222223455556667777777777766544444433222233333333332211
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011956 356 LFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTG 435 (474)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~ 435 (474)
... ...+........+.+.......|.......+. ....+|++.++.+.....+..+++...+++.+.+...
T Consensus 306 ~~~-------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~ 377 (413)
T PRK15403 306 LLW-------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRL 377 (413)
T ss_pred HHc-------cccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 000 12222122222222222223334443222222 2234799999999999999999999999988865555
Q ss_pred hhHHHHHHHHHH
Q 011956 436 TFFAFSAICSLT 447 (474)
Q Consensus 436 ~~~~~~~~~~~~ 447 (474)
.+.....++.+.
T Consensus 378 ~~~~~~~~~~~~ 389 (413)
T PRK15403 378 PFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=280.48 Aligned_cols=380 Identities=17% Similarity=0.169 Sum_probs=269.4
Q ss_pred HHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 011956 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120 (474)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 120 (474)
...++++.+...++.+...+.+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+++..+.++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 44555666777777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhH
Q 011956 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGT 196 (474)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~ 196 (474)
+++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++.+ +||+.|++.+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999998876 8999999988
Q ss_pred HHHHHHHHH-hhccCCChhHHHhcCChhHHHHHH--------H-HH-hCCCcc--hHHHHHHH---------HHHHHHHh
Q 011956 197 IPCLVQLIG-LCFIPESPRWLAKTGKGIESEAAL--------Q-RL-RGADAD--ISEEAAEI---------REYTETLE 254 (474)
Q Consensus 197 ~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~--------~-~~-~~~~~~--~~~~~~~~---------~~~~~~~~ 254 (474)
+++++..+. .+++||+++. .+++.+...... . .. .....+ ........ .....+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT 241 (485)
T ss_pred HHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 877665443 3456665431 111222111100 0 00 111100 00000000 00000111
Q ss_pred hccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 011956 255 RLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR 334 (474)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 334 (474)
+.++....+.++++.++...+..++.....+......|.|.....+......+.......++.+++.++.|++.||++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~ 321 (485)
T TIGR00711 242 DDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR 321 (485)
T ss_pred CCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH
Confidence 11222224567777777666666666555554455555555544433333445777778889999999999999999999
Q ss_pred ceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHH
Q 011956 335 PLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVS 414 (474)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 414 (474)
+.+..+..+.+++...+.+.... ..+........++.+.......+.......+..|+++++++.|+.+..+
T Consensus 322 ~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 393 (485)
T TIGR00711 322 KLVTIGLILYAVGFYWRAFTFTP--------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTR 393 (485)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHH
Confidence 98877777666666555421100 1222222222333333333333344456667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 011956 415 WLGSWIISFTFNFLMK 430 (474)
Q Consensus 415 ~~g~~i~~~i~g~~~~ 430 (474)
++|+.+|+.+.+.+.+
T Consensus 394 ~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 394 QLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999987
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=265.28 Aligned_cols=345 Identities=12% Similarity=0.030 Sum_probs=256.1
Q ss_pred HHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh-
Q 011956 47 GSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK- 125 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~- 125 (474)
+.+......+...+.+|.+.++++.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556777888899999999999999999999999999999999999999999999999999999888887
Q ss_pred ----hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHH
Q 011956 126 ----AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTI 197 (474)
Q Consensus 126 ----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~ 197 (474)
|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+ +||+.|++.++
T Consensus 87 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 166 (365)
T TIGR00900 87 LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV 166 (365)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998876 89999998877
Q ss_pred HHHHHHHHhhcc--CCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHH
Q 011956 198 PCLVQLIGLCFI--PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV 275 (474)
Q Consensus 198 ~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (474)
..++..+..+.+ ||+++. ++.+. ++ +. .++....+++.++++..+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~----~~~~~---------------~~--~~--------~~~~~~~~~~~~~~~~~~~~~~ 217 (365)
T TIGR00900 167 GFAISALLIVSVRIPELAAS----EIQAL---------------SN--AV--------LRDTREGIKFVLKNPLLRTLLL 217 (365)
T ss_pred HHHHHHHHHHhcccccCCCc----ccccc---------------ch--hH--------HHHHHhHHHHHHcCcHHHHHHH
Confidence 666654444333 332210 00000 00 00 0001123455666777666665
Q ss_pred HHHHHHHHhhccc-hhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHH
Q 011956 276 GVGLMVLQQFGGV-NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354 (474)
Q Consensus 276 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (474)
..++......... ...|.|....++......+.......++.+++.++.+++.||.+||+.+..+.....++...+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (365)
T TIGR00900 218 LALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT 297 (365)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh
Confidence 5555544433333 455555554443333344567777888899999999999999999988776655555555544432
Q ss_pred hhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 355 FLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
..+........+..+.......+...++..|..|+++|+++.|+.+...+++..++|.+.|.+.|.
T Consensus 298 -----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 298 -----------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333333444444444455667778999999999999999999999999999999999999873
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=272.53 Aligned_cols=383 Identities=17% Similarity=0.105 Sum_probs=247.0
Q ss_pred CchhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHH
Q 011956 32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD 111 (474)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~ 111 (474)
...|..+...++.....+.+. ...+..+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus 15 ~~~w~i~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 15 GWGWVVLGATFVSIGFSYAFP---KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred CcchHHHHHHHHHHHHHHhhh---cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 334544444444333333332 33466788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHH-HHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----
Q 011956 112 IVCIIGWVIIVFSKAAWWLDL-GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---- 186 (474)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---- 186 (474)
++.++++++++++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|++++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875 5799999999877778888899996 7899999999999999999999888766
Q ss_pred hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhh
Q 011956 187 NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQ 266 (474)
Q Consensus 187 ~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (474)
|||++|++.+++.++..+..+++.+.++... +.+.++ .+ .....+ ...+.. .....++..+....+.++
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~ 239 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKS-KE---GLPPDG-STKKLS-----KKSTAEKINRFLDFSLFT 239 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCcccc-cccccc-cc---cCCCCC-cccccc-----ccchhhhhhhhcchHHhc
Confidence 8999999988877765544433332221000 000000 00 000000 000000 000000001111124666
Q ss_pred HhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhc--CCcceeeehh
Q 011956 267 RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKS--GRRPLLLVSA 341 (474)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~ 341 (474)
++.++......++.......... +++.+.++.+.+. +......+++.++++++.+++.||. ++|+......
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~----~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 315 (455)
T TIGR00892 240 HRGFLVYLSGNVIMFLGFFAPII----FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSF 315 (455)
T ss_pred CchHHHHHHHHHHHHHHccchHH----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHH
Confidence 77666655555544444333333 3333334444433 3666677788888999999999974 3333332222
Q ss_pred hhH--HHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHH
Q 011956 342 AGT--CLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSW 419 (474)
Q Consensus 342 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 419 (474)
... .++.+.... ..+...+....++.+.......+...+.+.|.+|+++++++.|+.+...++|.+
T Consensus 316 ~~~~~~l~~ll~~~------------~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ 383 (455)
T TIGR00892 316 ALLFNGLTHLLCAL------------AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVL 383 (455)
T ss_pred HHHHHHHHHHHHHH------------hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHH
Confidence 222 122222211 122333333344444444455566678888999999999999999999999999
Q ss_pred HHHHHHHHHHh-hh-ccchhHHHHHHHH
Q 011956 420 IISFTFNFLMK-WS-STGTFFAFSAICS 445 (474)
Q Consensus 420 i~~~i~g~~~~-~~-~~~~~~~~~~~~~ 445 (474)
++|.+.|.+.| .+ +...+.+.+++.+
T Consensus 384 igp~i~G~l~~~~g~~~~~f~~~~~~~l 411 (455)
T TIGR00892 384 IGPPLAGRLVDATKNYKYIFYASGSIVV 411 (455)
T ss_pred ccccceeeeehhcCCcchHHHHhhHHHH
Confidence 99999999988 33 3344444444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=263.07 Aligned_cols=341 Identities=15% Similarity=0.203 Sum_probs=245.5
Q ss_pred HhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHH
Q 011956 49 YVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 128 (474)
+....+.....|..|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 33345566677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHH
Q 011956 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~ 204 (474)
.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+ +||+.|++.++..++..+
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776 899999988877666444
Q ss_pred H-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHH
Q 011956 205 G-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQ 283 (474)
Q Consensus 205 ~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (474)
. .++.||+++.. +.++ . +.....+++.++++..+...+...+....
T Consensus 175 ~~~~~~~~~~~~~----~~~~--------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (385)
T TIGR00710 175 LIFFILPETLPYE----ARIQ--------------I---------------STYFETFLLLLKSKMFWGYALIYGASFGG 221 (385)
T ss_pred HHHHhCCCCCCCc----ccCC--------------H---------------HHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 3 44566654210 0000 0 00011234555666666555544444433
Q ss_pred hhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccc
Q 011956 284 QFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQW 363 (474)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (474)
........+.+....++......+.......++.+++.++.+++.||+++|+.+..+.....++.+.+.......
T Consensus 222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 296 (385)
T TIGR00710 222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG----- 296 (385)
T ss_pred HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 332233333333322222222233666777788999999999999999999888777666666655554322110
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 364 IKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
............+.+.......+.......|..| ++++++.++.+.....++.+.+.+.+...+
T Consensus 297 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 297 --LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1222223333333333344445566677788777 689999999999988777677777774444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=258.15 Aligned_cols=360 Identities=17% Similarity=0.178 Sum_probs=237.7
Q ss_pred HHhhccccccccccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHH-HHHHHHHHHHHHHHHhh
Q 011956 48 SYVFGSAIGYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMG-FSDIVCIIGWVIIVFSK 125 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~ 125 (474)
++..+...+...|.+|. +++++|.|+.+.|++.+.+.+...+.+++.|+++||+||||.++ .+..+..++.+++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 44555556666777775 67899999999999999999999999999999999999988765 46666677788889999
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhH--HHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHH
Q 011956 126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGF--TTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (474)
Q Consensus 126 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~ 199 (474)
|++.+++.|+++|.+.+...|...++..|+.|+++|++. .+....+.++|.+++|++++.+ +||+.|++.++..
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999988888888888999999887777654 5777788888999998888766 8999999988877
Q ss_pred HHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHH
Q 011956 200 LVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (474)
Q Consensus 200 ~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (474)
++..+. ++++||.|++...+. ++.+.++.++++..+......+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 209 (375)
T TIGR00899 166 VLCGVLVWLFLPSYPRGAPGAL------------------------------------TRLEVRGLLASRDTRLLFVACT 209 (375)
T ss_pred HHHHHHHHHhCCCcccCccccc------------------------------------CcchhhhhhcCcchHHHHHHHH
Confidence 665444 455788764210000 0001122333444444333333
Q ss_pred HHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhc
Q 011956 279 LMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ 358 (474)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (474)
+............+.|....++......+..........+++.++.|++.||++||+.+..+.....+....+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~----- 284 (375)
T TIGR00899 210 LMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA----- 284 (375)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-----
Confidence 333322222233344443322222222234444445566778889999999999998876655443333332222
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 011956 359 DLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFF 438 (474)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~ 438 (474)
.++.+.......+.+.......+....+..|..| ++++++.++.+...++|..++|.+.|.+.+..++...+
T Consensus 285 -------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~ 356 (375)
T TIGR00899 285 -------DNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVY 356 (375)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 1222222223333333333344566678888887 46779999999999999999999999999843333333
Q ss_pred HHHHHHHHHHHhhheeCc
Q 011956 439 AFSAICSLTVLFVAKLVP 456 (474)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~ 456 (474)
....++.+.+.+...+.|
T Consensus 357 ~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 357 WFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHheec
Confidence 333344444444444443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=255.27 Aligned_cols=346 Identities=15% Similarity=0.121 Sum_probs=241.8
Q ss_pred HHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 011956 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120 (474)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 120 (474)
...+..+.+..+...+...+.+|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666667777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHH
Q 011956 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTI 197 (474)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~ 197 (474)
+++++|++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+ .++...+..+.
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 167 (381)
T PRK03633 88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGL 167 (381)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 999999999999999999999998888888888999999999999999999999999999999877 12222333222
Q ss_pred HHHHHHHHhh-ccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHH
Q 011956 198 PCLVQLIGLC-FIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276 (474)
Q Consensus 198 ~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (474)
.....+...+ ..+++++ + +.+..+.++.++++.++.....
T Consensus 168 ~~~~~~~~~~~~~~~~~~------~---------------------------------~~~~~~~~~~~~~~~~~~~~~~ 208 (381)
T PRK03633 168 VLAAILPLLFTRILNQQA------E---------------------------------NHDSTSIWPMLKLRQARLGVNG 208 (381)
T ss_pred HHHHHHHHHHhcccCCCC------C---------------------------------CCCCCCHHHHHHhcchHHHHHH
Confidence 2222111111 1222110 0 0001123445556555433322
Q ss_pred HHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHH
Q 011956 277 VGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAAL 353 (474)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 353 (474)
...........+. +.+.+.+..+.+. +.......++.+++++..|++.||+++|+.+..+.....++.+....
T Consensus 209 ~~~~~~~~~~~~~----~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~ 284 (381)
T PRK03633 209 CIISGIVLGSLYG----LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS 284 (381)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh
Confidence 2222222222223 3444444445443 35566777888899999999999999998877666665555443321
Q ss_pred HhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011956 354 SFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS 433 (474)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~ 433 (474)
.... .. ...+.+.......|...+.+.|..|+++++...+..+...++|..++|.+.|.+.|..+
T Consensus 285 ------------~~~~--~~-~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g 349 (381)
T PRK03633 285 ------------QAAM--AP-ALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS 349 (381)
T ss_pred ------------hHHH--HH-HHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1111 11 11222222334567777888898888888888888888899999999999999999443
Q ss_pred c-chhHHHHHHH
Q 011956 434 T-GTFFAFSAIC 444 (474)
Q Consensus 434 ~-~~~~~~~~~~ 444 (474)
+ ..+.+.+.+.
T Consensus 350 ~~~~f~~~~~~~ 361 (381)
T PRK03633 350 DNLLFIMIASVS 361 (381)
T ss_pred ccHHHHHHHHHH
Confidence 3 3344444333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=257.95 Aligned_cols=350 Identities=13% Similarity=0.032 Sum_probs=239.6
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 011956 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (474)
Q Consensus 60 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (474)
...+.+.+|++.++.+.+++.+.+.+++.++++++|+++||+|||++++++.+++++++++++++.+. ++.|+++|+
T Consensus 24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~ 100 (393)
T PRK11195 24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGI 100 (393)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33445678999999999999999999999999999999999999999999999999999888887664 688999999
Q ss_pred hhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHHHhhccCCChhHH
Q 011956 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIPESPRWL 216 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~ 216 (474)
+.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+...++..+..+.+||+|+..
T Consensus 101 ~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 180 (393)
T PRK11195 101 GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGARR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 99999999999999999999999999999999999999999999888 455555555544444455556678765321
Q ss_pred HhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHH
Q 011956 217 AKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYAS 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (474)
..++ .+. ... .++. ....+.+++++..+.......+.+..........+.|.+
T Consensus 181 ~~~~-~~~-~~~-----------------~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (393)
T PRK11195 181 PGQS-WNP-IAL-----------------LRDF--------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAP 233 (393)
T ss_pred cccC-CCH-HHH-----------------HHHH--------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 000 000 0000 011345566666555444443433333333445556666
Q ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHH
Q 011956 297 SIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVL 376 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (474)
..++......+......+++.+++.+..+++.||.++++.+..+. ..++....+.. .++.+......
T Consensus 234 ~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~------------~~~~~~~~~~~ 300 (393)
T PRK11195 234 VALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMAL------------QHSLLPAYPLL 300 (393)
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHH------------HhHHHHHHHHH
Confidence 666555555567888888999999999999999988887665553 22222222221 12222233333
Q ss_pred HHHHHHhccccchhhhhhcccCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhhh
Q 011956 377 VYTGSFSLGMGGIPWVIMSEVFPINM-KGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVA 452 (474)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
.+.+.......+...+..++..|++. +|.+.++.+...+++..++..+.+.+...+-...+.+.+...+....+.+
T Consensus 301 ~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 301 ILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 33333333334445577777766554 79999999999999999999999977555544444444443333333333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=261.34 Aligned_cols=341 Identities=23% Similarity=0.304 Sum_probs=246.7
Q ss_pred HHHhhcccccccccccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh
Q 011956 47 GSYVFGSAIGYSSPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK 125 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 125 (474)
+.+....+.....+.+| .+.+++|.+.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 83 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS 83 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh
Confidence 33444444555577778 89999999999999999999999999999999999999999999999999999977777778
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHH
Q 011956 126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV 201 (474)
Q Consensus 126 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~ 201 (474)
|++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++.+ +||+.|++.+++.++
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 163 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLI 163 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhh
Confidence 8889999999999999999999999999999999999999999999999999999999877 899999999998888
Q ss_pred HHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccch-hHHHHhhHhhHHHHHHHHHH
Q 011956 202 QLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEG-GILELFQRKYAHSLIVGVGL 279 (474)
Q Consensus 202 ~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 279 (474)
..++ .++++++|+....+.+.++. ++++.+.. .++.+++++..+......+.
T Consensus 164 ~~il~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
T PF07690_consen 164 AAILFILFLPEPPPPRERESPKESE--------------------------SKKPKPLKPGFKSLFKNPVLWILLIAFFL 217 (352)
T ss_dssp HHHHHHCCC---STTTT--SSTTTT----------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHH
T ss_pred hhhhHhhhhhhcccccccccccccc--------------------------cccccccccccccccccchhhhhhhhhhH
Confidence 6654 34455443321111111100 00111112 35667777766644444444
Q ss_pred HHHHhhccchhhHhcHHHHHHHc-CCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhc
Q 011956 280 MVLQQFGGVNGIAFYASSIFISA-GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ 358 (474)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (474)
..+.........+.|+...++.. ....+.......+..+++.++.+++.||+++|+..........+..+.+.....
T Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 295 (352)
T PF07690_consen 218 FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF-- 295 (352)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH--
T ss_pred HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44444334444555433444433 123335577778888888999999999999987776666655555554443221
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHH
Q 011956 359 DLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS 422 (474)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 422 (474)
..+........++.+.......+....+..|..|++++|++.|+.+...++|..++|
T Consensus 296 -------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 296 -------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp -------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 112222333333344455556778889999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=256.81 Aligned_cols=360 Identities=15% Similarity=0.128 Sum_probs=267.1
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhh
Q 011956 66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMGL 143 (474)
Q Consensus 66 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 143 (474)
..+++++.+|.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457999999999999999999999999999999999999999999999999999998875 556779999999999999
Q ss_pred hhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHHHHHHHh-hccCCChhHHH
Q 011956 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGL-CFIPESPRWLA 217 (474)
Q Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~ 217 (474)
.+|+...+.++|.|++||++..++..++..+|.+++.++++.+ ||+++|++.+..+++..+++ ++..|+|+..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h- 223 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH- 223 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC-
Confidence 9999999999999999999999999999999999998888776 89999999999999877666 4566777531
Q ss_pred hcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhc--cchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcH
Q 011956 218 KTGKGIESEAALQRLRGADADISEEAAEIREYTETLERL--SEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYA 295 (474)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (474)
+.- .++|.+..++....++.. .+.+++++++++.+|...+..+.............|.|+
T Consensus 224 -~~i-----------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~ 285 (466)
T KOG2532|consen 224 -PNI-----------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYL 285 (466)
T ss_pred -CCC-----------------CHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 111 111111111111111111 467899999999999999998888888777777888888
Q ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc--------cee-eehhhhHHHHHHHHHHHhhhccccccccc
Q 011956 296 SSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR--------PLL-LVSAAGTCLGCLLAALSFLFQDLQQWIKA 366 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (474)
..+++..-.+.++..++..+...+..+++|.++||+.+| |.. .++....+++++.+.+.. ..
T Consensus 286 ~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~---------~~ 356 (466)
T KOG2532|consen 286 KEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS---------DE 356 (466)
T ss_pred HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC---------CC
Confidence 877777777778999999999999999999999998663 111 122233333333333321 01
Q ss_pred chHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hhccchhHHHHH
Q 011956 367 TPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK----WSSTGTFFAFSA 442 (474)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~----~~~~~~~~~~~~ 442 (474)
..+..+.. +.+..+..+...+-.+....+..| ++.+..+|+.+....+.++++|.+.|.+.. ..+...+++.++
T Consensus 357 ~~~~a~~~-l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~ 434 (466)
T KOG2532|consen 357 HRLLAVIL-LTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAG 434 (466)
T ss_pred cchHHHHH-HHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHH
Confidence 22222222 222223332333333344445455 899999999999999999999999999983 234445555666
Q ss_pred HHHHHHHhhheeC
Q 011956 443 ICSLTVLFVAKLV 455 (474)
Q Consensus 443 ~~~~~~~~~~~~~ 455 (474)
+.++..++..++.
T Consensus 435 i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 435 ILIVGNIIFLFFG 447 (466)
T ss_pred HHHHhchheeEee
Confidence 5555554444443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=253.73 Aligned_cols=426 Identities=20% Similarity=0.247 Sum_probs=298.7
Q ss_pred CCCchhHHHHHHHHHHHHHHhhcccccccccccccccccc--------CCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011956 30 SASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDL--------GLSVAEYSLFGSILTIGAMIGAIMSGKIADYI 101 (474)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~ 101 (474)
.....|+....+.+..++.+.++++...++.+.|.+...+ +.++...+.+..+..+|..+||++.|+++||+
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~ 111 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF 111 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455789999999999999999999999888877665544 14556788999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHH
Q 011956 102 GRRGTMGFSDIVCIIGWVIIVFSK-------AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI 174 (474)
Q Consensus 102 Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 174 (474)
|||+++...++++.+++++++++. -.+++...|++.|+|.|+-+|...++.+|...+++||...+......+.
T Consensus 112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 999999999999999999888752 2467888999999999999999999999999999999888877666666
Q ss_pred HHHHHHHHhccc-------------------hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCC
Q 011956 175 GVSMTYLIGAFL-------------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGA 235 (474)
Q Consensus 175 g~~~~~~l~~~l-------------------~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (474)
|...|.+++-.+ -||..+.+..++.+..+...+.+||+++|.....+..+... .+..+.
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~--~d~~k~ 269 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA--GDMKKV 269 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh--hccccc
Confidence 666665554332 39999999999999999999999999988643332211111 111111
Q ss_pred -CcchHHHHHHHHHHHHHHhhccc---hhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---h
Q 011956 236 -DADISEEAAEIREYTETLERLSE---GGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---I 308 (474)
Q Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 308 (474)
+.+.+.+... +.....++ ..+...+..+ --..++.....++..-..++....+...+++..+...+ .
T Consensus 270 ~~~~~~~~~~~-----~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~ 343 (538)
T KOG0252|consen 270 LSVDIEAESTA-----ESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY 343 (538)
T ss_pred cccccchhhcc-----ccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH
Confidence 1000000000 00111111 1233333333 22455566666666555566667777777775544332 1
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHH
Q 011956 309 ---------GMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYT 379 (474)
Q Consensus 309 ---------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (474)
-..+...+.++|-.+...++|++|||+..+.++.++.+..+.+....... .......+...+..
T Consensus 344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~-------~~~~Gf~v~y~l~~ 416 (538)
T KOG0252|consen 344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL-------ENTIGFVVLYSLTF 416 (538)
T ss_pred HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc-------cccCceeehHHHHH
Confidence 11222233444666777789999999999999998888888777643110 11122222333334
Q ss_pred HHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----h-hccchhHHHHHHHHHHHHhhhe
Q 011956 380 GSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-----W-SSTGTFFAFSAICSLTVLFVAK 453 (474)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~ 453 (474)
.+...+.......+.+|.+|++.|+++.|+....+..|++++.....++.+ . +....+++++++ ....++..+
T Consensus 417 ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~-~~~gi~~T~ 495 (538)
T KOG0252|consen 417 FFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGC-MLLGILFTL 495 (538)
T ss_pred HHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHH-HHHhHheeE
Confidence 445556666667899999999999999999999999999999999999988 2 233445555554 444555566
Q ss_pred eCcCCCCCCHHHHHhhcC
Q 011956 454 LVPETKGRTLEEIQASMN 471 (474)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~ 471 (474)
+.+|+++++++|.+++++
T Consensus 496 l~pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 496 LIPETKGKSLEEISNEEE 513 (538)
T ss_pred EeecccccCHHHhcChhh
Confidence 778999999998866544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=256.01 Aligned_cols=367 Identities=16% Similarity=0.113 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 011956 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII 116 (474)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 116 (474)
....+.+.++.+.++..+...+....+.+++.||++++..|++.+.+.+.+.+++|++|+++|||+||+++.+|..+|.+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL 110 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence 34455666667777777777777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHH
Q 011956 117 GWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRIL 191 (474)
Q Consensus 117 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~ 191 (474)
+.+.++++..||+++++|.+.|+|++...|.++++++|.||.++|++++++++.+.++|..+|.+.+..+ .|||.
T Consensus 111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~a 190 (493)
T KOG1330|consen 111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWA 190 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998888776 59999
Q ss_pred HHHhHHHHHHHHHHh-hccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhH
Q 011956 192 ALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYA 270 (474)
Q Consensus 192 f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (474)
|+..++++++..++. ++++|+.|....+.+. ++.. ........++.+.+.|++.+
T Consensus 191 f~~~avl~vi~~~L~~~f~~eP~rga~~~~~~------------~~~~------------~~~~ts~~kDl~~l~~~~v~ 246 (493)
T KOG1330|consen 191 FRGSAVLGVIVGLLVFLFVREPERGARDEVDG------------ENKM------------VKPFTSVWKDLKVLAKIKVF 246 (493)
T ss_pred EEeehHHHHHHHHHHHhhccCccccccccccc------------CCcC------------CCCccchHHHHHHHHccCce
Confidence 999999998866555 5566654311000000 0000 00000111223334444566
Q ss_pred HHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCC----cceeeehhhh
Q 011956 271 HSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGR----RPLLLVSAAG 343 (474)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~----~~~~~~~~~~ 343 (474)
....+.+....+.......+.|.+.+..+...+.+.. .+..+...++.+|.+.+|.++||+.| .....+..+.
T Consensus 247 v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~ 326 (493)
T KOG1330|consen 247 VLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLS 326 (493)
T ss_pred eeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHH
Confidence 6666666666666666667777777776666654333 66677778899999999999998532 2222232222
Q ss_pred HHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHH-HHHH
Q 011956 344 TCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS-WIIS 422 (474)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~ 422 (474)
++.+.............. ........+.++++.............-...|++|++.|.++.++...+..+.+ +-+|
T Consensus 327 ~~~g~~~s~~~L~~~~~~---~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p 403 (493)
T KOG1330|consen 327 AALGAPLSIPFLFLFPAF---TSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASP 403 (493)
T ss_pred HhhhhhHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCc
Confidence 222221111111000000 012222223333333333333334444678888999999999999988877554 4556
Q ss_pred HHHHHHHh
Q 011956 423 FTFNFLMK 430 (474)
Q Consensus 423 ~i~g~~~~ 430 (474)
++.|.+.|
T Consensus 404 ~ivGilsd 411 (493)
T KOG1330|consen 404 YIVGILSD 411 (493)
T ss_pred ceehhHHH
Confidence 69999998
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=259.38 Aligned_cols=342 Identities=13% Similarity=0.095 Sum_probs=240.0
Q ss_pred HHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 011956 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120 (474)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 120 (474)
+..+.+..+..++......+..|.+++++|+|+++.|++.+.+.+++.+++++.|++.||+|||+++..+..++++++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l 107 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 33344444555555666678899999999999999999999999999999999999999999999999999999999988
Q ss_pred H---HHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcc------------
Q 011956 121 I---VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------------ 185 (474)
Q Consensus 121 ~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~------------ 185 (474)
+ .+++|++.++++|+++|+|.|...+....++.|+.++++|.+.+++.+..+.+|..+++.++..
T Consensus 108 ~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~ 187 (438)
T PRK10133 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchh
Confidence 6 4688999999999999999999999999999998877777778999999999999888877531
Q ss_pred ------------------chhhHHHHHhH-HHHHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHH
Q 011956 186 ------------------LNWRILALIGT-IPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAE 245 (474)
Q Consensus 186 ------------------l~wr~~f~~~~-~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (474)
.+||++|+... +..++.++. ...+||.+.. ++.+
T Consensus 188 ~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~----~~~~---------------------- 241 (438)
T PRK10133 188 VLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NHSD---------------------- 241 (438)
T ss_pred hhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----cccc----------------------
Confidence 15666665433 333332222 2334543210 0000
Q ss_pred HHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHH
Q 011956 246 IREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTL 322 (474)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 322 (474)
........+.++++++|.++...+..++..........+.+.|+.+ +..+.+. +.......++.+++++
T Consensus 242 ------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~--~~~g~s~~~ag~~~~~~~~~~~vG~~ 313 (438)
T PRK10133 242 ------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVE--EIPGMTAGFAANYLTGTMVCFFIGRF 313 (438)
T ss_pred ------ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000011234566777776665555555544444333334333211 1224433 4777888899999999
Q ss_pred HHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCc
Q 011956 323 LGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINM 402 (474)
Q Consensus 323 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 402 (474)
+++++.||+++|+.+..+..+.++.++...+. ..... ...+...+.+.....|..++...|..| ++
T Consensus 314 ~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~l~glg~~~i~P~~~s~a~~~~~-~~ 379 (438)
T PRK10133 314 TGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLG-QD 379 (438)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CChHH-HHHHHHHHHHHHHHHHHHHHHHHcccc-hh
Confidence 99999999999998877766555444443321 11112 223334555566778888889999877 45
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 403 KGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 403 ~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
.+++.++.. ....|+.++|.+.|.+.|.
T Consensus 380 ~~~as~l~~-~~~~g~~~~~~i~G~l~~~ 407 (438)
T PRK10133 380 TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_pred hccchhHHh-HHhccchHHHHHHHHHHHh
Confidence 788888886 4557899999999999884
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=265.04 Aligned_cols=358 Identities=17% Similarity=0.123 Sum_probs=245.2
Q ss_pred cccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011956 53 SAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL 132 (474)
Q Consensus 53 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (474)
.+....++..|.+.+++|.+.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAA 88 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444567778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHH-Hhccc----hhhHHHHHhHHHHHHH-HHHh
Q 011956 133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL-IGAFL----NWRILALIGTIPCLVQ-LIGL 206 (474)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-l~~~l----~wr~~f~~~~~~~~~~-~~~~ 206 (474)
.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++++ ++..+ +||+.|++.+++.++. ++..
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 89 LWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999984 44433 8999999888776664 4445
Q ss_pred hccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhc
Q 011956 207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286 (474)
Q Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (474)
++.||+|+....+.+.++..+ +.+++ ++..++..+..+...+++++++..+...+..++.......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (379)
T TIGR00881 169 LLLRDSPQSCGLPPAEEMPNE----------EPDGD----AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG 234 (379)
T ss_pred eeeCCCccccccCccccCccc----------ccccc----cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 566776542211111000000 00000 0000000011122345666777777666666555554444
Q ss_pred cchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccccccc
Q 011956 287 GVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKA 366 (474)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (474)
.....+.|..+..+......+.......++.+++.++.+++.||..+|+...............+....... .
T Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 307 (379)
T TIGR00881 235 ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP-------A 307 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc-------c
Confidence 444444444433322223344677778888999999999999986544332222222221111111111000 1
Q ss_pred chHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 367 TPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
.+........+..+....+..+....+..|..|+++|+++.|+.+...++|..++|.+.|.+.|.
T Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 308 ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence 12222222233333333344445567889999999999999999999999999999999999994
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=243.64 Aligned_cols=374 Identities=18% Similarity=0.194 Sum_probs=280.3
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 011956 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (474)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 114 (474)
++.....+......|...+.. +++.+.+.+|+|+|++|.+++.++..+...+..++.|.+.||||.|++..++.++.
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~---s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLF---SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 333334444444444443333 66666788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhH---HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHH----HHHhccch
Q 011956 115 IIGWVIIVFSKAA---WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT----YLIGAFLN 187 (474)
Q Consensus 115 ~~~~~~~~~~~~~---~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~----~~l~~~l~ 187 (474)
.+-.+..+++.++ +++++.+++.|++.+ .+.....++++||||+++|.++|+.. ..++|..+. |.+....+
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g 167 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG 167 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence 9999999998654 499999999999855 78999999999999999999999998 777776554 55555557
Q ss_pred ---hhHHHHHhHHHHHH-HHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHH
Q 011956 188 ---WRILALIGTIPCLV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263 (474)
Q Consensus 188 ---wr~~f~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (474)
||....+..+..++ .++.++.+.|.|++...++ +..+.+.+.
T Consensus 168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~----------------------------------~~~~~~~~~ 213 (417)
T COG2223 168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK----------------------------------PQLPAQLKA 213 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc----------------------------------ccchhHHHH
Confidence 99999888887777 4555566777764211110 001134566
Q ss_pred HhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhh
Q 011956 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAG 343 (474)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 343 (474)
++++++.|.+.+.++..+....+....++.|+...+.....+++.......+.+.+.++++|+++||+|.+|.+...+..
T Consensus 214 v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~ 293 (417)
T COG2223 214 VFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG 293 (417)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHH
Confidence 77789999999999988888888788888888887777777777888888888999999999999999999999998888
Q ss_pred HHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011956 344 TCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISF 423 (474)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 423 (474)
++++..++......... ..+.......++....+...-....+..+..++| ++.|.+.|+....+.+|++.-|.
T Consensus 294 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~ 367 (417)
T COG2223 294 MALAAALLSLFLTGFGH-----GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPL 367 (417)
T ss_pred HHHHHHHHHcccccccc-----CcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhH
Confidence 88888877764321110 1223333333333333333334455677888877 68999999999999999999999
Q ss_pred HHHHHHh-hh-ccchhHHHHHHHHHHHHhhhe
Q 011956 424 TFNFLMK-WS-STGTFFAFSAICSLTVLFVAK 453 (474)
Q Consensus 424 i~g~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 453 (474)
..|...+ .+ +...++++....+++.++.+.
T Consensus 368 ~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 368 AFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 44 334455555555554444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=256.14 Aligned_cols=331 Identities=15% Similarity=0.129 Sum_probs=237.2
Q ss_pred cccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011956 53 SAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL 132 (474)
Q Consensus 53 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (474)
...+...|.+|.+.+++|.++++.+++.+++.++..++++++|+++||+|||+++..+..+.+++.++++++++++.+++
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLV 99 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34556678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888889999999999999999998888888888888888765 9999999988887776655555
Q ss_pred cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccc
Q 011956 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (474)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (474)
++|+++. ++. +.++.++++.++++..+...+...........
T Consensus 180 ~~~~~~~----~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 221 (401)
T PRK11043 180 LKPSKKA----RKQ--------------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFA-- 221 (401)
T ss_pred cCCCCCc----ccc--------------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHH--
Confidence 5555320 000 00112344555565554443333332222222
Q ss_pred hhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccc
Q 011956 289 NGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIK 365 (474)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (474)
...+.+.+.+..+.+.. .......++.+++.+..+++.||+++|+..........++.+.+.......
T Consensus 222 --~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 292 (401)
T PRK11043 222 --WLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS------- 292 (401)
T ss_pred --HHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 22233444444455443 445555677888889999999999988866555444444433332211100
Q ss_pred cchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 366 ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
..............+.......+.......|..| +++|++.|+.+.....++..++.+.|.+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 293 HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1122222222333334444555666666667666 6899999999999999999999999988873
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=255.42 Aligned_cols=360 Identities=15% Similarity=0.066 Sum_probs=244.9
Q ss_pred HHHhhccccccccccccccccccCCChhh-----HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 011956 47 GSYVFGSAIGYSSPAQSGITNDLGLSVAE-----YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 121 (474)
+.+..+...+...+.+|.+.+++|.+..+ .|++.+++.++..++++++|+++||+|||+++..+.++.+++.+++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence 34444555556678889899999988654 4899999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHH
Q 011956 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTI 197 (474)
Q Consensus 122 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~ 197 (474)
.++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|..++|.+++.+ +||+.|++.++
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 180 (408)
T PRK09874 102 GLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS 180 (408)
T ss_pred HHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999999999865 5677788899999999999999999999999999999998876 89999999888
Q ss_pred HHHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHH
Q 011956 198 PCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276 (474)
Q Consensus 198 ~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (474)
..++..+. .+++||+++... +. + ..+ ..+..+.++++..+.....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~---~~-~------------------~~~------------~~~~~~~~~~~~~~~~~~~ 226 (408)
T PRK09874 181 VLFLCFLVTLFCIRENFQPVS---KK-E------------------MLH------------MREVVTSLKNPKLVLSLFV 226 (408)
T ss_pred HHHHHHHHHHHHhccCccccc---ch-h------------------hhH------------HHHHHHhCcCCchHHHHHH
Confidence 77665444 344565432100 00 0 000 0001122333333222211
Q ss_pred -HHHHHHHhhccchhhHhcHHHHHHHcCC---cchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHH
Q 011956 277 -VGLMVLQQFGGVNGIAFYASSIFISAGF---SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAA 352 (474)
Q Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 352 (474)
...............+.|.....+.... ..+......+++.+++.+..|++.||++||+.+..+.....++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 227 TTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 1222222111222333333332211110 012334455677788888999999999999988777665555544433
Q ss_pred HHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 011956 353 LSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW- 431 (474)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~- 431 (474)
.. .+.+......++.+.......+...+...+..|++++|+..++.+....+|..++|.+.|.+.+.
T Consensus 307 ~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~ 374 (408)
T PRK09874 307 FV------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY 374 (408)
T ss_pred Hh------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 31 22223333333444444455666667778888889999999999999999999999999999884
Q ss_pred hccchhHHHHHHHHHHHHhhhe
Q 011956 432 SSTGTFFAFSAICSLTVLFVAK 453 (474)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~ 453 (474)
++...+.+.+++.++..++.++
T Consensus 375 g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 375 GFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=253.71 Aligned_cols=264 Identities=19% Similarity=0.185 Sum_probs=195.2
Q ss_pred cccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011956 53 SAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL 132 (474)
Q Consensus 53 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (474)
.......+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus 17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 96 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLA 96 (392)
T ss_pred HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 33344457889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHH-Hhh
Q 011956 133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI-GLC 207 (474)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~-~~~ 207 (474)
.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.++..++..+ ..+
T Consensus 97 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 97 GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888765 899999998877766444 345
Q ss_pred ccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhcc
Q 011956 208 FIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGG 287 (474)
Q Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (474)
++||+++.. +++.. ......++.++++.++.......+........
T Consensus 177 ~~~~~~~~~--~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (392)
T PRK10473 177 ILKETRPAR--APAAS--------------------------------SKPRENSESLLNRFFLSRLVITTLSVTVILTF 222 (392)
T ss_pred HcCCCCCcc--cCCcc--------------------------------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 567764210 00000 00001123344444443333332222222211
Q ss_pred chhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHH
Q 011956 288 VNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAAL 353 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 353 (474)
....+.+.. +..+.+. +......+++.+++.++.+++.||++||+.+..+..+..++.+.+..
T Consensus 223 ~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 288 (392)
T PRK10473 223 VNTSPVLLM---EQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL 288 (392)
T ss_pred HHhCHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 222233332 2234433 35666777888999999999999999999887777766666655554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=249.50 Aligned_cols=324 Identities=13% Similarity=0.120 Sum_probs=224.7
Q ss_pred ccccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011956 59 SPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (474)
Q Consensus 59 ~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (474)
.|.++ .+++++|+|..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 109 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS 109 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45544 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHH-HhhccCCCh
Q 011956 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLI-GLCFIPESP 213 (474)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~-~~~~~~~~p 213 (474)
|++.+...+...+++.|++|+++|++++++.....++|..+||.+++.+ +||+.|++.++..++..+ ..++.||.+
T Consensus 110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~ 189 (400)
T PRK11646 110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYK 189 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999988899999999999999999999999999999999999998877 999999998877666443 334455431
Q ss_pred hHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHh
Q 011956 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAF 293 (474)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (474)
. .+.+ ++.+.++++.++++.++....................|.
T Consensus 190 ~-----~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (400)
T PRK11646 190 L-----STVR-------------------------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPI 233 (400)
T ss_pred c-----cccc-------------------------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1 0000 000112445555555544333332222221111223344
Q ss_pred cHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHH
Q 011956 294 YASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLM-DKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLAL 372 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (474)
|..+..+ .....+.......+....+....+++. ||++.++.+..+..+.+++...+... ++....
T Consensus 234 ~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~ 300 (400)
T PRK11646 234 MVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------SNLQQL 300 (400)
T ss_pred hHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------------hhHHHH
Confidence 4433221 112222444444544544444445555 45655555555555555554444332 222222
Q ss_pred HHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 373 VGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
.......+.......|...+.+.+..|++++|++.|+.+....+|..+||.+.|.+.|.
T Consensus 301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 22222222333344566678899999999999999999999999999999999999984
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=251.10 Aligned_cols=333 Identities=19% Similarity=0.247 Sum_probs=228.8
Q ss_pred ccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011956 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG 133 (474)
Q Consensus 54 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (474)
...+..|.+|.+.+++|+++++.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHH-HHhhc
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL-IGLCF 208 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~-~~~~~ 208 (474)
|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.++..++.. +..++
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988766 89999998887776654 34456
Q ss_pred cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccc
Q 011956 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (474)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (474)
+||+++... +++. +.+ ....++++.++++..+...+...+.........
T Consensus 166 ~~~~~~~~~-~~~~---------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (377)
T PRK11102 166 IPETLPKER-RQPF---------------HLR---------------TTIRNFASLFRHKRVLGYMLASGFSFAGMFSFL 214 (377)
T ss_pred CCccCcccc-cCCC---------------ChH---------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 677542100 0000 000 001123445556555544444333333222222
Q ss_pred hhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccch
Q 011956 289 NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
...+.+.....+....+.+.......++.+++.++.+++.||+++|+.+..+.....+..+.+....... ...
T Consensus 215 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 287 (377)
T PRK11102 215 TAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD-------LGF 287 (377)
T ss_pred HcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhH
Confidence 2223333222222222334677777888999999999999999999988776665443333222211000 111
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHH-HHHHHHHHHHH
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSW-LGSWIISFTFN 426 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~i~g 426 (474)
+........+.+.. ....+.......|..| +.++++.++.+.... +|..+++.+.+
T Consensus 288 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 288 WALVVGVAAFVGCV-SMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222222222 2233344466777766 889999999877654 55556665543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=245.36 Aligned_cols=333 Identities=27% Similarity=0.381 Sum_probs=262.5
Q ss_pred HHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 011956 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 123 (474)
..+..+....+.....+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 33445555666666778888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHH
Q 011956 124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (474)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~ 199 (474)
.++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++......+|..+++.+++.+ +||+.+++.++..
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877 7999999988877
Q ss_pred HHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHH
Q 011956 200 LVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL 279 (474)
Q Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (474)
++..+...+++ |..+...+..+.
T Consensus 164 ~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~~~ 186 (352)
T cd06174 164 LLLALLLLFLL---------------------------------------------------------RLLLLLALAFFL 186 (352)
T ss_pred HHHHHHHHHHH---------------------------------------------------------HHHHHHHHHHHH
Confidence 77655554432 112223333333
Q ss_pred HHHHhhccchhhHhcHHHHHHHc-CC---cchhHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeehhhhHHHHHHHHHHH
Q 011956 280 MVLQQFGGVNGIAFYASSIFISA-GF---SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRP-LLLVSAAGTCLGCLLAALS 354 (474)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 354 (474)
.... ......+.+.+.++. +. ..+.......++.+++.++.+++.||++||+ .+..+..+..++.+.....
T Consensus 187 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 187 LSFG----YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHhH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3333 233334444444432 32 2346777888899999999999999999998 8877777777777666652
Q ss_pred hhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhc
Q 011956 355 FLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSS 433 (474)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~ 433 (474)
.+.........+.+.......+....+..|..|+++|++..|+.+...+++..++|.+.|.+.+ .++
T Consensus 263 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~ 330 (352)
T cd06174 263 ------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY 330 (352)
T ss_pred ------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 2234444455555666666778888999999999999999999999999999999999999998 444
Q ss_pred cchhHHHHHHHHHHHH
Q 011956 434 TGTFFAFSAICSLTVL 449 (474)
Q Consensus 434 ~~~~~~~~~~~~~~~~ 449 (474)
...+.+.+++..+..+
T Consensus 331 ~~~~~~~~~~~~i~~i 346 (352)
T cd06174 331 GGVFLILAALALLAAL 346 (352)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4445555554444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=245.73 Aligned_cols=349 Identities=17% Similarity=0.122 Sum_probs=228.1
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH---H-hhhHHHHHHHHH
Q 011956 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---F-SKAAWWLDLGRL 135 (474)
Q Consensus 60 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~ 135 (474)
+.++.+.+|+|.++++.|++.+.+.+++.++++++|+++||+|||+++..+..+++++++++. + .+|++.+++.|+
T Consensus 34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (402)
T TIGR00897 34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYG 113 (402)
T ss_pred HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHH
Confidence 344556688999999999999999999999999999999999999999999999998877653 3 357888999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHH-HHHHHHhccc----hhhHHHHHhHHHHHHHH-HHhhcc
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGV-SMTYLIGAFL----NWRILALIGTIPCLVQL-IGLCFI 209 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~l----~wr~~f~~~~~~~~~~~-~~~~~~ 209 (474)
++|++.+...+...+.+.+++|+++|++++|+.+.+.++|. +++|++++.+ ||+..++......++.. +..++.
T Consensus 114 i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 114 IRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred HHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988888888889999999999999999999999996 5788887654 76655554433333322 223334
Q ss_pred CCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccch
Q 011956 210 PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN 289 (474)
Q Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (474)
++.++.. +.+.++ + . ++.+..+++++++|..+...+..++........
T Consensus 194 ~~~~~~~--~~~~~~-------------~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 241 (402)
T TIGR00897 194 KDIFTPQ--HMQTRE-------------K-------F--------SELGKAATILFTNPNVLLGGMVRIINTIGLFGF-- 241 (402)
T ss_pred CCCCCcc--cccCCc-------------c-------h--------hhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH--
Confidence 4432100 000000 0 0 000112445667777666555554444433333
Q ss_pred hhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeee-hhhhHHHHHHHHHHHhhhcccccccc
Q 011956 290 GIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLV-SAAGTCLGCLLAALSFLFQDLQQWIK 365 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (474)
..|.|.+.+..+.+.. .......++.+++.+..|+++||++||+.... +.+...++...+.......
T Consensus 242 --~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~------- 312 (402)
T TIGR00897 242 --AVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF------- 312 (402)
T ss_pred --HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 3344444444444333 55566778899999999999999998886532 2222222222222111000
Q ss_pred cchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHH
Q 011956 366 ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAIC 444 (474)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~ 444 (474)
..+........+..+.......+. .....|..| ++|+++.|+.+...+++..++|.+.|.+.| .+....+++.+++.
T Consensus 313 ~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~ 390 (402)
T TIGR00897 313 GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALY 390 (402)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 112222222222233332233333 345566645 789999999999999999999999999999 55555556665555
Q ss_pred HHHHHhh
Q 011956 445 SLTVLFV 451 (474)
Q Consensus 445 ~~~~~~~ 451 (474)
++..++.
T Consensus 391 ~i~~~~~ 397 (402)
T TIGR00897 391 VVSAFLT 397 (402)
T ss_pred HHHHHHH
Confidence 4544443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=248.63 Aligned_cols=335 Identities=14% Similarity=0.114 Sum_probs=238.9
Q ss_pred ccccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011956 59 SPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (474)
Q Consensus 59 ~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (474)
.|.+| .+++++|++..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.+++++++.++++|++.
T Consensus 27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (395)
T PRK10054 27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALI 106 (395)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45444 46788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHHHh-hccCCCh
Q 011956 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGL-CFIPESP 213 (474)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~-~~~~~~p 213 (474)
|.+.+...+...++..|.+|+++|++++++.....++|.+++|++++.+ +||.+|++.++..++..+.. +++||++
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 107 NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9888888888999999999999999999999999999999999999887 89999998887777654433 4455543
Q ss_pred hHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHh
Q 011956 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAF 293 (474)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (474)
+. ++.++ . +..+.++.++++.++......++............+.
T Consensus 187 ~~----~~~~~-------------------------~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 231 (395)
T PRK10054 187 KA----IATET-------------------------G------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQ 231 (395)
T ss_pred cc----cccch-------------------------h------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHH
Confidence 10 00000 0 0011244566676666655555544433333344555
Q ss_pred cHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHH
Q 011956 294 YASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFL 370 (474)
Q Consensus 294 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (474)
|.+... ..+.+.. .......+......+..+++.||.++|+.+..+..+..++...+... .++..
T Consensus 232 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~ 299 (395)
T PRK10054 232 YVMVVA-DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-----------GNSLL 299 (395)
T ss_pred HHHHhc-ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-----------chHHH
Confidence 554432 2222222 34444444555566788899999999988777766666665555431 12222
Q ss_pred HHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 011956 371 ALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFS 441 (474)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~ 441 (474)
.........+.......|.....+.+..|++.++++.+..+ ...+|..+||.+.|.+.|..++..++...
T Consensus 300 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 300 LWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 22223333333334445666678889999999999998765 67799999999999999955544444333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-31 Score=247.80 Aligned_cols=336 Identities=15% Similarity=0.112 Sum_probs=244.7
Q ss_pred HHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 011956 42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 121 (474)
.+++...+..++..+...|.+|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34555566667777778899999999999999999999999999999999999999999999999999999999999886
Q ss_pred HH---hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc------------
Q 011956 122 VF---SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------------ 186 (474)
Q Consensus 122 ~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l------------ 186 (474)
.. .+|++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..++|.++..+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 54 468999999999999999999999999999999999999999999999999999998886543
Q ss_pred ------------------hhhHHHHHhHHHHHHHHHHhhc--cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHH
Q 011956 187 ------------------NWRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEI 246 (474)
Q Consensus 187 ------------------~wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (474)
+||++|++.+++.++..+...+ .||.++ ++ +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~----------------------- 216 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-A----------------------- 216 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-c-----------------------
Confidence 4999999888876665444332 333211 00 0
Q ss_pred HHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHc--CCcch---hHHHHHHHHHHHHH
Q 011956 247 REYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA--GFSGS---IGMIAMVVIQIPMT 321 (474)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~ 321 (474)
++.....+.++.+|+|.++...+..+++...+.... .|++.+..+. +.+.+ ...........+|+
T Consensus 217 ------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~----s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR 286 (410)
T TIGR00885 217 ------KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCW----TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR 286 (410)
T ss_pred ------ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 000011123455667776666666666555544333 3444443332 22222 33444556788999
Q ss_pred HHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCC
Q 011956 322 LLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPIN 401 (474)
Q Consensus 322 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 401 (474)
++++++.||+++|+.+.+.....++.+++.... ...... ..+...+++.....|..++...+..+++
T Consensus 287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~------------~~~~~~-~~l~~~glf~s~~fp~i~sl~~~~~g~~ 353 (410)
T TIGR00885 287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA------------GGHVGL-YCLTLCSAFMSLMFPTIYGIALKGLGQD 353 (410)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CChHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999998777766666665555542 222222 3333344555556688889999999866
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 402 MKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 402 ~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
.+..+.++.... +|+.+.|++.|.+.|.
T Consensus 354 ~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 354 TKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred hhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 554455544443 9999999999999993
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=246.42 Aligned_cols=333 Identities=14% Similarity=0.070 Sum_probs=228.9
Q ss_pred ccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011956 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG 133 (474)
Q Consensus 54 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (474)
......|.+|.+.+++|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++.+++|++.+++.
T Consensus 23 ~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (394)
T PRK11652 23 AQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAA 102 (394)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHH-HHHhhc
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQ-LIGLCF 208 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~-~~~~~~ 208 (474)
|++.|++.+...+....+..|++++++|++++++.+.+..+|..++|.+++.+ +||+.|++.++..++. .+..++
T Consensus 103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 103 SAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888888999999999999999999999999999999888766 8999999987766654 334456
Q ss_pred cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccc
Q 011956 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (474)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (474)
+||+++.. +.+ +.....+++.++++..+......+..........
T Consensus 183 ~~~~~~~~----~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (394)
T PRK11652 183 MPETRPAD----ARR-------------------------------TRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFE 227 (394)
T ss_pred CCccCccc----cch-------------------------------hHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 77764310 000 0011223445555555544443333322222222
Q ss_pred hhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccch
Q 011956 289 NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
...+.+....++......+.......++.+++..+.+++.||.+++.. .......++.+.+....... ...
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~ 298 (394)
T PRK11652 228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPGWFG-------VMN 298 (394)
T ss_pred HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc-------ccc
Confidence 223333333222222222355555667777888888888888873222 22222222222221111000 112
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
.+.........+.......|...++..|..| ++++++.++.+....+|..+++.+.+.+.+.
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 299 VWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 2222222233333333456777788888887 6889999999999999999999999887664
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=252.14 Aligned_cols=343 Identities=18% Similarity=0.106 Sum_probs=235.5
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 011956 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (474)
Q Consensus 60 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (474)
+.+..+.+|.+....+.+.+.++|.++++++++++|.|.||++..+.+....+++++..++.....|++.+++.|++.|+
T Consensus 67 a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl 146 (495)
T KOG2533|consen 67 ASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGL 146 (495)
T ss_pred HHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445779999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred hhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----------hhhHHHHHhHHHHHHH-HHHhhc
Q 011956 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQ-LIGLCF 208 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----------~wr~~f~~~~~~~~~~-~~~~~~ 208 (474)
.++..+|....+++.|+.++||++.++++.+..++|.++|++++..+ ||||.|++.+++.++. ++..++
T Consensus 147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFF 226 (495)
T ss_pred HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEE
Confidence 99999999999999999999999999999999999999999998772 9999999999988874 555677
Q ss_pred cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccc
Q 011956 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (474)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (474)
+|++|....-..+.++ .-..++.+..+... ..++.+...+++.++++..|...+..++......+..
T Consensus 227 lp~~P~~~~fl~~~ek-~~~~~~~~~~~~~~------------~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~ 293 (495)
T KOG2533|consen 227 LPDNPSKAWFLTDEEK-ELVVERLRESPSGG------------IENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFS 293 (495)
T ss_pred ecCChhhccccchHHH-HHHHHHHHhccCCC------------cccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHH
Confidence 9999862210011000 00011111111000 0011355678888999999988888888877665555
Q ss_pred hhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhc----CCcceeeehhhhH-HHHHHHHHHHhhhcccccc
Q 011956 289 NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS----GRRPLLLVSAAGT-CLGCLLAALSFLFQDLQQW 363 (474)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 363 (474)
++.|.|+..-.+....+++.+..+..++++++.+++|+++||. .+|........+. .++.+.+..
T Consensus 294 ~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~---------- 363 (495)
T KOG2533|consen 294 YWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA---------- 363 (495)
T ss_pred HHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 5555555441112233455888999999999999999999995 3333333222222 222222222
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCC-chhhHHHHHHHHHHHHHHHHHHHHHH
Q 011956 364 IKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPIN-MKGSAGSLVTLVSWLGSWIISFTFNF 427 (474)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~~~~g~~i~~~i~g~ 427 (474)
...........+..........+......++....+ ++-+..+......+.++.++|.+.-.
T Consensus 364 --~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~ 426 (495)
T KOG2533|consen 364 --AAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRS 426 (495)
T ss_pred --hccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhccc
Confidence 111111222222222222233344455666655433 34444555555556666666666543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=247.14 Aligned_cols=331 Identities=19% Similarity=0.211 Sum_probs=220.3
Q ss_pred cccccccccccC--CChhhHHHHHHH-----HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHH---
Q 011956 59 SPAQSGITNDLG--LSVAEYSLFGSI-----LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW--- 128 (474)
Q Consensus 59 ~~~~~~i~~~~~--~s~~~~g~~~s~-----~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--- 128 (474)
+...+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.++++++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
T TIGR00883 13 GFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIG 92 (394)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence 333344444533 445666655443 3334457899999999999999999999999999999999999875
Q ss_pred -----HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcc------------chhhHH
Q 011956 129 -----WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------------LNWRIL 191 (474)
Q Consensus 129 -----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~------------l~wr~~ 191 (474)
.+++.|+++|++.+...+...+++.|++++++|++..++.+.+..+|.++++.++.. .+||++
T Consensus 93 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~ 172 (394)
T TIGR00883 93 IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIP 172 (394)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHH
Confidence 478899999999999999999999999999999999999999999999999877532 389999
Q ss_pred HHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhh--
Q 011956 192 ALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKY-- 269 (474)
Q Consensus 192 f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 269 (474)
|++.++..++..+.....||+|++..+++ +++..+.+.++.++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 220 (394)
T TIGR00883 173 FLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------------------KHKKKRGPIRETLTKHRKP 220 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------------------ccccccCCHHHHHHhchHH
Confidence 99887776666555556677654211110 01112233455555543
Q ss_pred HHHHHHHHHHHHHHhhccchhhHhcHHHHH-HHcCCc---chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHH
Q 011956 270 AHSLIVGVGLMVLQQFGGVNGIAFYASSIF-ISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTC 345 (474)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 345 (474)
.+......++.... ......+.+.+. +..+.+ .+.......+..+++.++.+++.||++||+.+.....+..
T Consensus 221 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 296 (394)
T TIGR00883 221 FLLGLGLVIATTTT----FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAA 296 (394)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 22222222222222 222333444444 222333 3356667778889999999999999999987664444333
Q ss_pred HHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHH-HHHHHHHHHHHHH
Q 011956 346 LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT-LVSWLGSWIISFT 424 (474)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~i 424 (474)
+........... ..+........+..+.......+...+...|.+|++.|+++.++.+ ....+|..++|.+
T Consensus 297 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~ 368 (394)
T TIGR00883 297 LLAVPLLMALLD--------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYI 368 (394)
T ss_pred HHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHH
Confidence 322111111100 1222223333333344444455667789999999999999999854 5556888899999
Q ss_pred HHHHHhhhc
Q 011956 425 FNFLMKWSS 433 (474)
Q Consensus 425 ~g~~~~~~~ 433 (474)
.|.+.|..+
T Consensus 369 ~g~l~~~~g 377 (394)
T TIGR00883 369 AAALVAMTG 377 (394)
T ss_pred HHHHHHHcC
Confidence 999999433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=248.84 Aligned_cols=376 Identities=12% Similarity=0.133 Sum_probs=243.3
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchhH-HH
Q 011956 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRGT-MG 108 (474)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-l~ 108 (474)
+++...++.+++. .+......++.+|...++.|.+.+++|.+ +.....+ ++.+++|+++||+ |||+. +.
T Consensus 11 ~~~~~~~~~l~~~---~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll 85 (491)
T PRK11010 11 QPNSAILLILGFA---SGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLL 85 (491)
T ss_pred ccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHH
Confidence 3444444444333 33344455777888888999999999997 4444444 6899999999999 99885 66
Q ss_pred HHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 011956 109 FSDIVCIIGWVIIVFS---KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF 185 (474)
Q Consensus 109 ~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 185 (474)
.+.+..+++..++++. ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..
T Consensus 86 ~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~ 165 (491)
T PRK11010 86 ATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALW 165 (491)
T ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7878787887777775 4788899999999999999999999999999999999999999999999999999866654
Q ss_pred c-----hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchh
Q 011956 186 L-----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGG 260 (474)
Q Consensus 186 l-----~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (474)
+ |||..|++.++..++..+..+++||+++.. ++.++ . ++....+
T Consensus 166 l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~--------------~--------------~~~~~~~ 214 (491)
T PRK11010 166 LADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKT--------------L--------------EQAVVAP 214 (491)
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccc--------------h--------------hhhHHHH
Confidence 3 899999998888777666656677764310 00000 0 0000123
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHH-HHHHHHHHHHHHHHHHHHhhcCCcce
Q 011956 261 ILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGM-IAMVVIQIPMTLLGVLLMDKSGRRPL 336 (474)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~ 336 (474)
+++.++++..+......++..........+.+.|+. +..+.+.. ... ....++.+++.+++|+++||+++|+.
T Consensus 215 l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~---~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~ 291 (491)
T PRK11010 215 LRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLI---RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA 291 (491)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455565555554444444333332222333333332 23454444 333 33446888999999999999999887
Q ss_pred eeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHH
Q 011956 337 LLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL 416 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 416 (474)
+..+..+.++..+.+...... ..+...+....++.........+..++...+..+++..++..|+.+....+
T Consensus 292 l~i~~~l~~l~~l~~~~l~~~--------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~l 363 (491)
T PRK11010 292 LMIFGILQGVSNAGYWLLSIT--------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAV 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 665544444433322211110 112222111111111111111233467888888989999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhhheeCcC
Q 011956 417 GSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPE 457 (474)
Q Consensus 417 g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
|..+++.+.|.+.|..++...+.+..++.+.+++.....++
T Consensus 364 g~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 364 GRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999444444555454444444444444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=236.13 Aligned_cols=348 Identities=16% Similarity=0.187 Sum_probs=210.8
Q ss_pred cccccc-cccccCCChhhHHHHHHHHHH-HHHHHHHHHHHhhhccCchhHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 011956 59 SPAQSG-ITNDLGLSVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTM-GFSDIVCIIGWVIIVFSKAAWWLDLGRL 135 (474)
Q Consensus 59 ~~~~~~-i~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 135 (474)
.|.+|. +.+|+|.++++.|++.+...+ ++.++++++|+ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.
T Consensus 35 ~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (393)
T PRK15011 35 TPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGV 113 (393)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455553 688999999999999876655 55565655555 9999999875 5666666788888889999998876665
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHH-hhc
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLR--GGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG-LCF 208 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~-~~~ 208 (474)
+.|...+...|...+++.++.++++| +...++.+.+.++|.+++|++++.+ |||..|++.++..++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 193 (393)
T PRK15011 114 FLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF 193 (393)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence 55555556788888888888876655 4556888889999999999998776 9999999988877665444 455
Q ss_pred cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccc
Q 011956 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (474)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (474)
+||.++.. ++.++ + . +. .++ +.+..+.................
T Consensus 194 ~~~~~~~~---~~~~~-----------~-------------~---~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~ 236 (393)
T PRK15011 194 LPSMRKEL---PLATG-----------T-------------L---EA-----PRR--NRRDTLLLFVICTLMWGTNSLYI 236 (393)
T ss_pred cCccCCCC---ccccc-----------c-------------c---cc-----ccc--ccccHHHHHHHHHHHHHHHHHHH
Confidence 77764210 00000 0 0 00 000 00111111122222222221122
Q ss_pred hhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccch
Q 011956 289 NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
...+.|....++......+.......+..+++.++.|+++||++||+.+..+.....+........ .+.
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 305 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-----------HSP 305 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-----------hhH
Confidence 234444433222222222344455556677888999999999999987655444333332222111 122
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTV 448 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
+..+ ......+.......+....+..|..| ++++++.++.+...++|..++|.+.|.+.|..++...+....++.+..
T Consensus 306 ~~~l-~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~ 383 (393)
T PRK15011 306 AILL-GLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT 383 (393)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 2222 22111111111222333466788888 569999999999999999999999999999433333444444444444
Q ss_pred HhhheeCcC
Q 011956 449 LFVAKLVPE 457 (474)
Q Consensus 449 ~~~~~~~~~ 457 (474)
.+.++..||
T Consensus 384 ~~~~~~~~~ 392 (393)
T PRK15011 384 LFCLLRIKD 392 (393)
T ss_pred HHHHHhhcC
Confidence 444444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=241.30 Aligned_cols=330 Identities=19% Similarity=0.185 Sum_probs=219.9
Q ss_pred ccccccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHH
Q 011956 56 GYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLG 133 (474)
Q Consensus 56 ~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~ 133 (474)
....+..|. +++++|+|+.+.+++.+.+.+++.++++++|+++||+|||+.+.++.++.+++.+++++++ +++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (366)
T TIGR00886 18 FAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLL 97 (366)
T ss_pred HHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334778884 9999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHh----cc----------chhhHHHH-HhHHH
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----AF----------LNWRILAL-IGTIP 198 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~----~~----------l~wr~~f~-~~~~~ 198 (474)
|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.++ .. .+||+.|+ ..++.
T Consensus 98 ~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 98 RLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI 176 (366)
T ss_pred HHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 9999999664 566788999999999999999999866666655554443 32 26999994 44544
Q ss_pred HHH-HHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHH
Q 011956 199 CLV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (474)
Q Consensus 199 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (474)
..+ ..+...+.+|+|+... + +.+.. ..+.... .++......++.++++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~---~--~~~~~-----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (366)
T TIGR00886 177 LLLPALLIFFVGADTPPGKP---A--TGKLS-----FKGARWS------------VGTGALGDQLKVFRDRHTWILALLY 234 (366)
T ss_pred HHHHHHHHHHhcccCCcccc---c--chhcc-----ccccccc------------ccchhHHHHHHHHhccchhhHHHHH
Confidence 443 4444455666653110 0 00000 0000000 0000011344566676666665555
Q ss_pred HHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhh
Q 011956 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLF 357 (474)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (474)
..............+.|....++......+.......+..++++++.|++.||+++|+.+..+......+...+......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (366)
T TIGR00886 235 SVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVS 314 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 55444444444445555544333223333456667778889999999999999999887766665555554444432100
Q ss_pred cccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHH
Q 011956 358 QDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLG 417 (474)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 417 (474)
..+...................+..+....+..| +++|+++|+.+...++|
T Consensus 315 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 315 --------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred --------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 0022222222222333333334555677888877 79999999999988765
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=235.05 Aligned_cols=328 Identities=16% Similarity=0.167 Sum_probs=231.5
Q ss_pred HhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHH
Q 011956 49 YVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 128 (474)
+..........|.+|.+.+|+|++.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+.+ .+++++
T Consensus 10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~ 88 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA 88 (355)
T ss_pred hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence 3344444566889999999999999999999999999999999999999999999999999999988888877 788999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc------hhhHHHHHhHHHHHHH
Q 011956 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQ 202 (474)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l------~wr~~f~~~~~~~~~~ 202 (474)
.+++.|++.|++.+...+....++.|+++ ++|++++++.+.+.++|..+++.++..+ +||+.|.+.++..++.
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999888888889999986 5799999999999999999888777655 3999888766554443
Q ss_pred HHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHH
Q 011956 203 LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL 282 (474)
Q Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (474)
.. .++|+.++. +.+. ++..+...++.+|++..+...+..++...
T Consensus 168 ~~--~~~~~~~~~---~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (355)
T TIGR00896 168 LL--AWIPQVRRR---VAAN-------------------------------QTTTRLTPVRIWRSPLAWQVTVFFGLQSG 211 (355)
T ss_pred HH--HHhhhhccc---cCCC-------------------------------CCCCCCCCchhhcCHhHHHHHHHHHHHHH
Confidence 22 223443210 0000 00011223456666666655444444434
Q ss_pred HhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcC-CcceeeehhhhHHHHHHHHHHHhhhc
Q 011956 283 QQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSG-RRPLLLVSAAGTCLGCLLAALSFLFQ 358 (474)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (474)
...... .|.+.++++.+.+. +.......++.++++++.|++.||++ ||+.+..+..+.+++.+.+.+..
T Consensus 212 ~~~~~~----~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--- 284 (355)
T TIGR00896 212 LYYSLI----GWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP--- 284 (355)
T ss_pred HHHHHH----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh---
Confidence 333333 34444444444433 36777788899999999999999995 55555555555555555444321
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 359 DLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVF-PINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
...... ...+.+.......+...+...+.. ++++++...++.+...+++..++|.+.|.+.|.
T Consensus 285 --------~~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 285 --------MHGLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred --------hhHHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 122334444444555555554443 456779999999999999999999999999983
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=235.79 Aligned_cols=346 Identities=14% Similarity=0.038 Sum_probs=244.8
Q ss_pred HHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHH----HHHHHHHHHHHHHHHH
Q 011956 48 SYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTM----GFSDIVCIIGWVIIVF 123 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l----~~~~~~~~~~~~~~~~ 123 (474)
.+.+....+...|.+|.+.+|+|.|.+++|++.+++.+...++++++|+++||+|||+.. .++..+..+ ..+..
T Consensus 13 ~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~ 90 (382)
T TIGR00902 13 FFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAG 90 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHh
Confidence 444444456678889999999999999999999999999999999999999999985433 233222222 34456
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHH
Q 011956 124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (474)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~ 199 (474)
+++++.+++.|.++|.+.+...|...++..++ +++|++..+....+.++|.+++|++++.+ |||..|++.....
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL 168 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 78999999999999999988889988887665 46789999999999999999999988777 9999998876553
Q ss_pred HHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHH
Q 011956 200 LVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL 279 (474)
Q Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (474)
++.++.. .++|+++. +++.++ .+..+..+.++++|+|.++...+..++
T Consensus 169 ~~~~~~~-~~~~~~~~---~~~~~~----------------------------~~~~~~~~~~~~l~~~~~~~~l~~~~l 216 (382)
T TIGR00902 169 AFMLIGF-LIKPTIPP---KDAIPE----------------------------DESQGDSAFIALLKNPMNLRFLAAVCL 216 (382)
T ss_pred HHHHHHH-HcCCCCCC---Cccccc----------------------------cccccchhHHHHHcChHHHHHHHHHHH
Confidence 3333333 33433210 000000 000112235677788888777776666
Q ss_pred HHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhh
Q 011956 280 MVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL 356 (474)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (474)
............+.|. ++.+.+. +.......++.+++.+..+++.||+++|+.+..+.+...+....+.+.
T Consensus 217 ~~~~~~~~~~~~~~~l----~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-- 290 (382)
T TIGR00902 217 IQGAHAAYYGFSAIYW----QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-- 290 (382)
T ss_pred HHHHHHHHHHHHHHHH----HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--
Confidence 6655444444444444 3344443 356666777888888999999999999999888888888777766552
Q ss_pred hcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhccc
Q 011956 357 FQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTL-VSWLGSWIISFTFNFLMKWSSTG 435 (474)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~i~~~i~g~~~~~~~~~ 435 (474)
++.+.+....++.+.......+....++.+. |+++++++.++++. ...+|..++|.+.|.+.|..+..
T Consensus 291 ----------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~ 359 (382)
T TIGR00902 291 ----------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAG 359 (382)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3334444444445544445566667888888 88999999999874 56799999999999999954555
Q ss_pred hhHHHHHHHHH
Q 011956 436 TFFAFSAICSL 446 (474)
Q Consensus 436 ~~~~~~~~~~~ 446 (474)
.++..+.+.++
T Consensus 360 ~~~~~~~~~~~ 370 (382)
T TIGR00902 360 TFVFMAIIAAA 370 (382)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=235.72 Aligned_cols=360 Identities=14% Similarity=0.104 Sum_probs=221.8
Q ss_pred ccccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH---Hhhh-----HHH
Q 011956 59 SPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---FSKA-----AWW 129 (474)
Q Consensus 59 ~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~-----~~~ 129 (474)
.|.+| .+.+++|+|..+.|++.+.+.++..++++++|+++||+|||+++.++..+.+++..... .++. ...
T Consensus 30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (420)
T PRK09528 30 FSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLG 109 (420)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544 45667999999999999999999999999999999999999999887766655443221 1111 111
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHHHh
Q 011956 130 LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGL 206 (474)
Q Consensus 130 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~ 206 (474)
.++++++.|.+.....+....+..+ . .+++++.++......++|..++|++++.+ +|+++|++.++..++..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~ 187 (420)
T PRK09528 110 AIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLL 187 (420)
T ss_pred HHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHH
Confidence 2223333333333333333333222 2 24567788888888899999999888877 89999999888777766555
Q ss_pred hccC-CChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhh
Q 011956 207 CFIP-ESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (474)
Q Consensus 207 ~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (474)
++.+ |+++....+++ ++ ++.++.+....++.+|++..+...+..........
T Consensus 188 ~~~~~~~~~~~~~~~~-~~--------------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~ 240 (420)
T PRK09528 188 FFAKPDAPSTAKVANA-LG--------------------------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYD 240 (420)
T ss_pred hcccccccchhhhccc-hh--------------------------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHH
Confidence 5543 33221000000 00 00001111224456666666554443333333222
Q ss_pred ccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccc
Q 011956 286 GGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQ 362 (474)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (474)
......+.|........+.+. +.......+...++.++.|++.||+++|+.+..+..+..++.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------- 312 (420)
T PRK09528 241 VFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------- 312 (420)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--------
Confidence 223345666655554333332 355566667788999999999999999998877777666666655542
Q ss_pred ccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHH-HHHHHHHHHHHHHHHHHHHHh-hhccchhHHH
Q 011956 363 WIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL-VTLVSWLGSWIISFTFNFLMK-WSSTGTFFAF 440 (474)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~ 440 (474)
.+. +.+.....+.+.......+....++.|..|++.+++..+. .++...+|.+++|.+.|.+.| .++...+...
T Consensus 313 ---~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 313 ---TGP-LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred ---ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 222 2233333333333223334445778888899999888766 677888999999999999999 4555555556
Q ss_pred HHHHHHHHHhhheeCcCCC
Q 011956 441 SAICSLTVLFVAKLVPETK 459 (474)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~ 459 (474)
+.+.++..++..+..++++
T Consensus 389 ~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 389 GGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 6665555555555555433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=243.07 Aligned_cols=381 Identities=19% Similarity=0.207 Sum_probs=263.5
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHH
Q 011956 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG-RLLV 137 (474)
Q Consensus 59 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~ 137 (474)
+...+.++++++.+.++++|+.++......+..|+.+.+.||+|.|++.+.|.++.+++.++.++++++|++++. -++.
T Consensus 66 Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~ 145 (509)
T KOG2504|consen 66 GLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIG 145 (509)
T ss_pred hhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 466778999999999999999999999999999999999999999999999999999999999999999998876 5888
Q ss_pred HhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCC-C
Q 011956 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE-S 212 (474)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~-~ 212 (474)
|+|.|..+.....++..||+ ++|+.+.|+...+.++|.++-|++...+ |||+.+++.+.+.+-.++....+++ .
T Consensus 146 G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~ 224 (509)
T KOG2504|consen 146 GLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLS 224 (509)
T ss_pred hccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999985 5599999999999999999988888777 9999999988877665555444433 2
Q ss_pred hhHHHh---cCCh-----hHHHHHHH-HHhCCCcchH----HHHHHHHHHHHHHh-hccchh----HHHHhhHhhHHHHH
Q 011956 213 PRWLAK---TGKG-----IESEAALQ-RLRGADADIS----EEAAEIREYTETLE-RLSEGG----ILELFQRKYAHSLI 274 (474)
Q Consensus 213 p~~~~~---~~~~-----~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~ 274 (474)
+..... +.+. +....... +....+.... .+....++..+... ...+.. ..++++++.+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~ 304 (509)
T KOG2504|consen 225 PPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLA 304 (509)
T ss_pred cCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHH
Confidence 211000 0000 00000000 0000000000 00000000000000 011111 25677777666666
Q ss_pred HHHHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceee--ehhhhHHHHHH
Q 011956 275 VGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLL--VSAAGTCLGCL 349 (474)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~ 349 (474)
+...+..+. +.....+++.+....+.+. .......++..++++++.|++.|+...++... ++.+..+++..
T Consensus 305 ~~~~~~~~g----~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 305 LSNLFAYLG----FNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence 666555554 4445556666666555544 48888999999999999999999988444333 33333333333
Q ss_pred HHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 350 LAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
...+ ...+..+....++.+...+.+.......+.|..+.++...+.|+...+..++..+||++.|.+.
T Consensus 381 ~~p~------------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~ 448 (509)
T KOG2504|consen 381 FLPF------------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY 448 (509)
T ss_pred HHHH------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence 3332 3455566666666666666666666678999999999999999999999999999999999999
Q ss_pred h-hhccchhHHHHHHHHHHHHhhheeCc
Q 011956 430 K-WSSTGTFFAFSAICSLTVLFVAKLVP 456 (474)
Q Consensus 430 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (474)
| .+.+...+.+..++.+.+...++..+
T Consensus 449 d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 449 DITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9 55455555555555555444444443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=227.56 Aligned_cols=338 Identities=14% Similarity=0.062 Sum_probs=227.4
Q ss_pred cccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCch----hHHHHHHHHHHHHHHHHHHhhhHH
Q 011956 53 SAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR----GTMGFSDIVCIIGWVIIVFSKAAW 128 (474)
Q Consensus 53 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~ 128 (474)
...+...|.+|.+.+|+|.|.+++|++.+++.++..++++++|+++||+||| +.+.++..+. .......++|+|
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 95 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFW 95 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHH
Confidence 3445567888888999999999999999999999999999999999999984 3333222222 223344468899
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHH
Q 011956 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~ 204 (474)
.+++.|++.|++.+...|...++..++ +++|+++.+......++|.++||++++.+ |||..|++.++..++..+
T Consensus 96 ~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~ 173 (382)
T PRK11128 96 LLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 999999999999998899888888877 35578888888888889999999998876 999999887765554444
Q ss_pred HhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHh
Q 011956 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284 (474)
Q Consensus 205 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (474)
..++.||.++ +++.++ ..++...++++++|++.++......++.....
T Consensus 174 ~~~~~~~~~~----~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 221 (382)
T PRK11128 174 GQLLRPTIMP----QGESRQ----------------------------QESAGWPAWKALLKEPTVWRFLLCVSLLQGSH 221 (382)
T ss_pred HHHccCCCCC----cccccc----------------------------ccccccchHHHHHcChhHHHHHHHHHHHHHHh
Confidence 4444454321 000000 00011235677888888877766666555443
Q ss_pred hccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccc
Q 011956 285 FGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQ 361 (474)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (474)
.......+.|. .+.+.+. +.......+..++..++.+++.||+++|+.+..+....+++.+.+...
T Consensus 222 ~~~~~~~~~~~----~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~------- 290 (382)
T PRK11128 222 AAYYGFSAIYW----QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST------- 290 (382)
T ss_pred HhHHHHHHHHH----HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 33333334433 3344443 355556667788888899999999999998877777666665554432
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccchhHHH
Q 011956 362 QWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLV-SWLGSWIISFTFNFLMKWSSTGTFFAF 440 (474)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~i~g~~~~~~~~~~~~~~ 440 (474)
++.+......++.+.......+....+..+. +++++++..+..+.. ..+|..++|.+.|.+.|..+...++..
T Consensus 291 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~ 364 (382)
T PRK11128 291 -----TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVM 364 (382)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 2222233333333333333445555667776 556678889988744 567779999999999995444444444
Q ss_pred HHH
Q 011956 441 SAI 443 (474)
Q Consensus 441 ~~~ 443 (474)
+++
T Consensus 365 ~~~ 367 (382)
T PRK11128 365 ALV 367 (382)
T ss_pred HHH
Confidence 433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=255.90 Aligned_cols=339 Identities=13% Similarity=0.027 Sum_probs=235.0
Q ss_pred ccccccCCCh-hhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 011956 64 GITNDLGLSV-AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGF---SDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (474)
Q Consensus 64 ~i~~~~~~s~-~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (474)
.+.++.+.+. ...++..+++.+.+.++++++|+++||+|||+++.. +.++.++..+.+...+|+++++++|+++|+
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi 120 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGI 120 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555555443 457888999999999999999999999999997533 333333333344445899999999999999
Q ss_pred hhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCCChhH
Q 011956 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPESPRW 215 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~~p~~ 215 (474)
+.+...|+..+++.+++++++|++++++.+++.++|.++||++++++ +|++.|+..++..++.++..+++|+++..
T Consensus 121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1140)
T PRK06814 121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA 200 (1140)
T ss_pred HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999999999999999999999999999999987 89999855555566666666667765421
Q ss_pred HHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcH
Q 011956 216 LAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYA 295 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (474)
. ++...+. .. . +.....++.+.+++.++...+..++.++.......+.+.|.
T Consensus 201 ~--~~~~~~~------------~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 252 (1140)
T PRK06814 201 A--PDLKIDR------------NI------I--------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA 252 (1140)
T ss_pred C--CCCeecc------------ch------H--------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0 0000000 00 0 00112355666777777777766666655544555666666
Q ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccc--c------cccccc
Q 011956 296 SSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDL--Q------QWIKAT 367 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~ 367 (474)
...++......+......+++.+++.++.|++.|+..+++.+..+.++..++.+.+.+....... . ......
T Consensus 253 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1140)
T PRK06814 253 KETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR 332 (1140)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence 65554444445578888889999999999999988877776666555554444433321000000 0 000002
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 368 PFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
+.+.+.+..++.+.+.....+...+.+++..|++.+|+++|+.++..+++..+++.+.|.+.+
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333334444445555667899999999999999999999999999999999999886
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=226.60 Aligned_cols=354 Identities=13% Similarity=0.025 Sum_probs=230.9
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011956 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR-RGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (474)
Q Consensus 59 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (474)
.+..+.+.+++|++.+|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+++.|++.
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN 102 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344556778899999999999999999999999999999999965 7888999999988888899999999999999999
Q ss_pred Hhhhhhhhhhhhhhhh--------hcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHH
Q 011956 138 GYGMGLLSYVVPVYIA--------EITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG 205 (474)
Q Consensus 138 G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~ 205 (474)
|++.+...+...++.. |......|.+..|. +|.+++|.+++.+ .|+ +|++.++..++..+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF 175 (418)
T ss_pred HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH
Confidence 9987777766655532 22222334555552 4555556555544 344 466666655555555
Q ss_pred hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhh
Q 011956 206 LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (474)
Q Consensus 206 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (474)
.+++||+|+.. ++.+. + . ++..+.+.++.+|++.++...+..++......
T Consensus 176 ~~~~~e~~~~~---~~~~~-------------~-----------~---~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 225 (418)
T TIGR00889 176 ALTLPDIPVAK---STAKM-------------S-----------I---KVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQ 225 (418)
T ss_pred HhcCCCCCCCc---ccccc-------------C-----------H---HHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHH
Confidence 56778875310 00000 0 0 00001123445666666555555444433221
Q ss_pred ccchhhHhcHHHHHHHcCC-----------cchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHH
Q 011956 286 GGVNGIAFYASSIFISAGF-----------SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354 (474)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (474)
....+.+.+.++.+. ..+.......+..+++.+..|++.||+|+|+.+..+.++..++...+...
T Consensus 226 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~ 301 (418)
T TIGR00889 226 ----ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG 301 (418)
T ss_pred ----HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 222333333333221 12466677777888899999999999999999888887776665555442
Q ss_pred hhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHH-HHHHHHHHHHHHHHHHHHhh-h
Q 011956 355 FLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT-LVSWLGSWIISFTFNFLMKW-S 432 (474)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~i~g~~~~~-~ 432 (474)
.. .......+....++.+.......+....++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.|. +
T Consensus 302 ~~--------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 302 DP--------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred Cc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 00 00112222233333333333445566688899999999999999997 56789999999999999984 2
Q ss_pred ------ccchhHHHHHHHHHHHHhhheeCcCCCCC
Q 011956 433 ------STGTFFAFSAICSLTVLFVAKLVPETKGR 461 (474)
Q Consensus 433 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (474)
+...+.+.+++..+.+++.+++.+|+++.
T Consensus 374 ~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 374 AYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 22345555556566666666677766543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=225.93 Aligned_cols=357 Identities=16% Similarity=0.144 Sum_probs=233.1
Q ss_pred HHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-----Cchh-HHHHHHHHHHHHHHH
Q 011956 47 GSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRG-TMGFSDIVCIIGWVI 120 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~-~l~~~~~~~~~~~~~ 120 (474)
..+..+...+.....+|.+-++.|+|.+++|++..+... .+.++++|+++||+ |||| .+.++.++.+++..+
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 345566667777788888888999999999999777775 69999999999999 8875 788888888888888
Q ss_pred HHHh---hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHH
Q 011956 121 IVFS---KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILA 192 (474)
Q Consensus 121 ~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f 192 (474)
.++. .+++.+++..++.++..+...+...+++.|++|+++|+++.++...+.++|.++++.++..+ |||..|
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f 164 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY 164 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence 7776 35788888888889888989999999999999999999999999999999999988866543 899999
Q ss_pred HHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHH
Q 011956 193 LIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHS 272 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (474)
++.++..++..+..+++||+++.. ++.++. ++....++++++++|.++.
T Consensus 165 ~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~ 213 (402)
T PRK11902 165 LLMAGLMLAGALTTLWAPEPEVPA---RPPRSL----------------------------GEAVVGPLRDFFSRRGAWA 213 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccc---cccchh----------------------------HHHHHHHHHHHHhCcCHHH
Confidence 998887776655556677764310 000000 0001223566777877776
Q ss_pred HHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHH-HHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHH
Q 011956 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMV-VIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGC 348 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 348 (474)
......+............+ +.+.+..+.+.. ......+ ++.+++.++++++.||+++|+.+..+.....+..
T Consensus 214 ~l~~~~l~~~~~~~~~~~~~---~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 214 LLLLIVLYKLGDAFAGSLST---TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN 290 (402)
T ss_pred HHHHHHHHHhHHHHHHHHHH---HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66555554433222111222 222333455444 3322223 4578889999999999999887765555544443
Q ss_pred HHHHHHhhhcccccccccchHHHHHHHH----HHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011956 349 LLAALSFLFQDLQQWIKATPFLALVGVL----VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFT 424 (474)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 424 (474)
+.+...... .++.+.+.... +..+.......+....++++..|.+ ..++.+....++..+++.+
T Consensus 291 l~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 291 LGYWVLAVT--------PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPT 358 (402)
T ss_pred HHHHHHHhc--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHH
Confidence 333221110 11222222221 1222223333444556666666644 4566666667788777788
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHhh
Q 011956 425 FNFLMKWSSTGTFFAFSAICSLTVLFV 451 (474)
Q Consensus 425 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (474)
.|.+.|..++..++..+.++.+.+++.
T Consensus 359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 359 SGYLVEAYGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 999999444444444444444443433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=224.90 Aligned_cols=361 Identities=13% Similarity=0.070 Sum_probs=232.0
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWW-LDLGRLLVG 138 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G 138 (474)
....+.+++|++.++.+++.+.+.....+..+++|+++|| +||||++.++.+++++++++++++++... ++++|+++|
T Consensus 37 l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ 116 (489)
T PRK10207 37 LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIA 116 (489)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 3345778899999999999999999999999999999999 99999999999999999999999876554 558999999
Q ss_pred hhhhhhhhhhhhhhhhcCCCCc--chhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCCC
Q 011956 139 YGMGLLSYVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPES 212 (474)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~~ 212 (474)
+|.|...|...+++.|.+|+++ |+++.++++.+.++|..+||.+++++ |||+.|++.++..++.++.+.+.++.
T Consensus 117 ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~ 196 (489)
T PRK10207 117 VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGM 196 (489)
T ss_pred hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchh
Confidence 9999999999999999998874 47789999999999999999888877 99999998655444344333333322
Q ss_pred hhHHH--hcC-ChhHHHHHH------------HHHhCCCcchHHHHHHH----HHHHHHHhhccchhHHHHhhHhhHHHH
Q 011956 213 PRWLA--KTG-KGIESEAAL------------QRLRGADADISEEAAEI----REYTETLERLSEGGILELFQRKYAHSL 273 (474)
Q Consensus 213 p~~~~--~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (474)
.+... .++ +.|.....+ ....... ......... ....-..++.+. .+.+|++.+...
T Consensus 197 ~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~f~~~~~~~---~~~~r~r~~~~~ 272 (489)
T PRK10207 197 VKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV-EVANLVLIVLSIVVTIIFFREAFKL---DKTGRNKMFVAF 272 (489)
T ss_pred hcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 11100 001 111100000 0000000 000000000 000000000000 134445443332
Q ss_pred HHH--HHHHHHHhhccchhhHhcHHHHHHHc--CC--cchhHHHHHHHHHHHHHHHHHHHHhhcCCcce-------eeeh
Q 011956 274 IVG--VGLMVLQQFGGVNGIAFYASSIFISA--GF--SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPL-------LLVS 340 (474)
Q Consensus 274 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~~~~ 340 (474)
.+. ..+.+.......+.++.|.+...+.. +. .+........+..++..++.+++.||+++|+. +.++
T Consensus 273 ~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G 352 (489)
T PRK10207 273 VLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLG 352 (489)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 221 23333434444455566655322221 11 12344455556677778888999999998863 5566
Q ss_pred hhhHHHHHHHHHHHhh-hcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHH
Q 011956 341 AAGTCLGCLLAALSFL-FQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSW 419 (474)
Q Consensus 341 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 419 (474)
.++.+++.+.+..... ....+ ...+.++.+...++.+.......+...+.+.+..|++.+|.++|+.+...++|+.
T Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~---~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~ 429 (489)
T PRK10207 353 MFLCSLGFLTAAAAGMWFADAQ---GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL 429 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 6666666544322111 11100 1233444555666667777777888889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 011956 420 IISFTFNFL 428 (474)
Q Consensus 420 i~~~i~g~~ 428 (474)
++..+.+..
T Consensus 430 lg~~l~~~~ 438 (489)
T PRK10207 430 LGGYVATFT 438 (489)
T ss_pred HHHHHHHHh
Confidence 998888655
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=225.39 Aligned_cols=352 Identities=14% Similarity=0.134 Sum_probs=226.3
Q ss_pred cccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH---Hh-----hhHHH
Q 011956 59 SPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---FS-----KAAWW 129 (474)
Q Consensus 59 ~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~-----~~~~~ 129 (474)
.|.+|. +.+++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++..... +. +.+..
T Consensus 22 ~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (396)
T TIGR00882 22 FPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVG 101 (396)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 555554 4667999999999999999999999999999999999999999887776665443321 11 22344
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHHHh
Q 011956 130 LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGL 206 (474)
Q Consensus 130 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~ 206 (474)
+++.|++.|++.+...+....+..|..+ ++++..+......++|.+++|.+++.+ +||++|++.+++.++..+..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~ 179 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLL 179 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHH
Confidence 5677889999888888888877776532 345566777777788888888888766 99999999888877755544
Q ss_pred hc-cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhh
Q 011956 207 CF-IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (474)
Q Consensus 207 ~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (474)
+. .||+|+... +. ++ .+ ++.++.+..+.++.+|++.++...+..+.......
T Consensus 180 ~~~~~~~~~~~~-~~---~~-------~~----------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 232 (396)
T TIGR00882 180 MFAKPKAPSSAT-VA---NA-------LG----------------ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYD 232 (396)
T ss_pred HHhCCCCchhhh-hh---cc-------cc----------------cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 44 344332100 00 00 00 00011122345667777766555444333333222
Q ss_pred ccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccc
Q 011956 286 GGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQ 362 (474)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (474)
......+.|.+..++..+.+. +.......+...++.+..+++.||+++|+.+.++..+.++........
T Consensus 233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------- 304 (396)
T TIGR00882 233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------- 304 (396)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--------
Confidence 233345666655553322222 345556667778888999999999999998877777666655543331
Q ss_pred ccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHH-HHHHHHHHHHHHHHHHHHHHh-hhccchhHHH
Q 011956 363 WIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL-VTLVSWLGSWIISFTFNFLMK-WSSTGTFFAF 440 (474)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~ 440 (474)
.+.+.. ....+..+............+..+..|++.++++.+. .+....+|+.++|.+.|++.| .++...+.+.
T Consensus 305 ---~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~ 380 (396)
T TIGR00882 305 ---TTALEV-VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVL 380 (396)
T ss_pred ---CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHH
Confidence 222222 2223333332222222334566777788888887766 678899999999999999999 4555566666
Q ss_pred HHHHHHHHHhh
Q 011956 441 SAICSLTVLFV 451 (474)
Q Consensus 441 ~~~~~~~~~~~ 451 (474)
+++..+.+++.
T Consensus 381 ~~~~~i~~~~~ 391 (396)
T TIGR00882 381 GCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHH
Confidence 66555554443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=254.31 Aligned_cols=330 Identities=12% Similarity=0.028 Sum_probs=228.7
Q ss_pred cccccccCCCh--hhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHH
Q 011956 63 SGITNDLGLSV--AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFSKAAWWLDLGRLLV 137 (474)
Q Consensus 63 ~~i~~~~~~s~--~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~ 137 (474)
+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++..+..++. ..+++++.++++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 113 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL 113 (1146)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34555566543 457999999999999999999999999999999999887766555544 3457899999999999
Q ss_pred HhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-h------------hhHHHHHhHHH-HHHHH
Q 011956 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-N------------WRILALIGTIP-CLVQL 203 (474)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-~------------wr~~f~~~~~~-~~~~~ 203 (474)
|++.+...+...+++.|++|+++|++++++...+.++|.++|+.+++++ . |++.+.+..+. .++.+
T Consensus 114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1146)
T PRK08633 114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL 193 (1146)
T ss_pred HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776 2 23333333332 33344
Q ss_pred HHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHH
Q 011956 204 IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQ 283 (474)
Q Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (474)
+..+.+||.|+....+.+.++ . .. .+.....++.+++++.++..++..++.+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-----------~-~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (1146)
T PRK08633 194 IFAYRLPKVPAAAPEVFDKKK-----------Y-LF--------------PKLLWRNLKLLRSDRVLWLAIIGLSYFWFI 247 (1146)
T ss_pred HHHhcCcCCCCCCcccccccc-----------c-cc--------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 445567776542111100000 0 00 000112345566666666665555555544
Q ss_pred hhccchhhHhcHHHHHHHcCC-cchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccc
Q 011956 284 QFGGVNGIAFYASSIFISAGF-SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQ 362 (474)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (474)
.......++.|....++.... ..++......++.+++.++.+++.||+++++.+.++.++.+++.+.+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------- 319 (1146)
T PRK08633 248 SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------- 319 (1146)
T ss_pred HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--------
Confidence 443444455555444433333 34577777888899999999999999998888777766666665555442
Q ss_pred ccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 363 WIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
.+........++.+.+.....+...+++.+..|++.||+++|+.+++.++|..+++.+.+.+..
T Consensus 320 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 320 ----PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred ----hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333344444444455567888999999999999999999999999888887776654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=222.42 Aligned_cols=365 Identities=17% Similarity=0.163 Sum_probs=258.3
Q ss_pred CchhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHH
Q 011956 32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD 111 (474)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~ 111 (474)
+..+..|..-.+..++..+.. ...+.+..+..-|+...+++..+..+...+.++++|.++||++||++++.+-
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~-------va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~ 82 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQT-------VALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ 82 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 334555555566666665553 3344455566678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 112 IVCIIGWVIIVFS-----KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 112 ~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
++.++..+..++. .+.+.+++.-++.|++.+...|+..+++.|..|+++...++++.+...++..++||.+++.+
T Consensus 83 ~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L 162 (524)
T PF05977_consen 83 LLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL 162 (524)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 8877665554432 37888999999999999999999999999999999999999999999999999999999887
Q ss_pred ----hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHH
Q 011956 187 ----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGIL 262 (474)
Q Consensus 187 ----~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (474)
|-.++|.+.++..++.+......+++++ +++. .. +...+.-+..++
T Consensus 163 va~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~-~~-------------------------e~~~~~l~~G~r 212 (524)
T PF05977_consen 163 VAFFGAAAAFLINALSFLISILALLRWKPPPP----PSSL-PR-------------------------ERFFSALREGLR 212 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----cccc-ch-------------------------hhhhhhHHHHHH
Confidence 7778888877765554444444433211 0000 00 000011122333
Q ss_pred HHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhh
Q 011956 263 ELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAA 342 (474)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 342 (474)
-+.+++..+..+...++..+........+|.+....++......++.....+++.++|.++.+++.+|+++++.+..+.+
T Consensus 213 yv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~ 292 (524)
T PF05977_consen 213 YVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASL 292 (524)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHH
Confidence 34445555544444444444333334445555555454444444588889999999999999999999998888877777
Q ss_pred hHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHH
Q 011956 343 GTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS 422 (474)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 422 (474)
..+++.+.+.+ ..+.+......++.|...........+..++..|++.||++++++++....+..+|.
T Consensus 293 ~~a~~~~~lal------------~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGs 360 (524)
T PF05977_consen 293 LFALALLLLAL------------SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGS 360 (524)
T ss_pred HHHHHHHHHhc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77776666665 233444444444555555555556678899999999999999999999999999999
Q ss_pred HHHHHHHhhhccchhHHHHHHHH
Q 011956 423 FTFNFLMKWSSTGTFFAFSAICS 445 (474)
Q Consensus 423 ~i~g~~~~~~~~~~~~~~~~~~~ 445 (474)
.+.|.+.+..+....+..+++++
T Consensus 361 ll~G~la~~~g~~~al~~a~~~l 383 (524)
T PF05977_consen 361 LLWGFLADHFGVRTALLIAGAAL 383 (524)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999433333333343333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=208.19 Aligned_cols=353 Identities=16% Similarity=0.131 Sum_probs=268.1
Q ss_pred HHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH---H
Q 011956 47 GSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---F 123 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~ 123 (474)
..++.++......+.+|.+++.|+++..|.+++..+++.++.+.+++.|++.+|+|+|+.++.|+.++++++.+.. .
T Consensus 21 lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~ 100 (422)
T COG0738 21 LFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS 100 (422)
T ss_pred HHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344555555667899999999999999999999999999999999999999999999999999999999999984 5
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----------------
Q 011956 124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------------- 186 (474)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----------------- 186 (474)
..+|..++++-++.|.|.+...+.+..+++...++++-.+.+.+.+..+++|.+++|++++.+
T Consensus 101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~ 180 (422)
T COG0738 101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAI 180 (422)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHH
Confidence 568999999999999999999999999999999999889999999999999999999998765
Q ss_pred ------hhhHHHHHhHHHHHHHHHHhhc--cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccc
Q 011956 187 ------NWRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSE 258 (474)
Q Consensus 187 ------~wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (474)
.||++|...+...++..+.... .|+.+.. .++..+.+.
T Consensus 181 ~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------------------------~~~~~~~~~ 226 (422)
T COG0738 181 KGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------------------------APSLGASGS 226 (422)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc----------------------------------ccccccccc
Confidence 3777888777766665554443 3433210 000011111
Q ss_pred hhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceee
Q 011956 259 GGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLL 338 (474)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 338 (474)
....+++++|+.+...+..+++...+.....+++.|+.+..+....+..........+.++|++++-++..|+...|.+.
T Consensus 227 ~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~La 306 (422)
T COG0738 227 AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLA 306 (422)
T ss_pred chHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 15678889999999999999988887777777777666542222233347788888999999999999999999888887
Q ss_pred ehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHH
Q 011956 339 VSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS 418 (474)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 418 (474)
...+...+.++...+. +.. ..+....+.+.+.....|..++...+..| ++...+.+ .-.+..+|+
T Consensus 307 f~a~~~ill~~~~~l~------------~g~-v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~-~l~maivGG 371 (422)
T COG0738 307 FYALIAILLLLAVALI------------GGV-VALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSG-LLVMAIVGG 371 (422)
T ss_pred HHHHHHHHHHHHHHHh------------cCh-HHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccce-eeeeheecc
Confidence 7666555555555542 222 33334455566677788999999999998 55444444 445567899
Q ss_pred HHHHHHHHHHHhh-hccchhHHHHHHHHHHH
Q 011956 419 WIISFTFNFLMKW-SSTGTFFAFSAICSLTV 448 (474)
Q Consensus 419 ~i~~~i~g~~~~~-~~~~~~~~~~~~~~~~~ 448 (474)
++.|++.|++.|. +....+......|.+..
T Consensus 372 AiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 372 AIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999994 33333444455555544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=215.32 Aligned_cols=345 Identities=14% Similarity=0.070 Sum_probs=251.2
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhh
Q 011956 66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLS 145 (474)
Q Consensus 66 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 145 (474)
.++.+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|+.++..+++++++.++|++++++|.+||+|.++..
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCc-chhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcC
Q 011956 146 YVVPVYIAEITPKNL-RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTG 220 (474)
Q Consensus 146 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 220 (474)
++..++++|.||+++ |++++|+.-.+.++|..+||++|+.+ |.+.+|++.+++.++-..+.+++-|..+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~------ 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE------ 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc------
Confidence 999999999998765 69999999999999999999999998 9999999999999986665555433211
Q ss_pred ChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHH
Q 011956 221 KGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI 300 (474)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (474)
.+..+..+..++++++++|..+................--.++.|..+.+.
T Consensus 252 -----------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~ 302 (464)
T KOG3764|consen 252 -----------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMF 302 (464)
T ss_pred -----------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhcc
Confidence 000022344567888888887766665555555444444455555555444
Q ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHH
Q 011956 301 SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTG 380 (474)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (474)
..+...+..+....+...++..+.|.+.||++..+.+.....+..++........ .... ...+.......+..+
T Consensus 303 ~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~-~~~~-----~~L~vp~~~l~~~i~ 376 (464)
T KOG3764|consen 303 TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPF-ATSI-----AQLWVPNFGLGFGIG 376 (464)
T ss_pred CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHh-hhhH-----HHHhhhhHHHHHHHH
Confidence 4455667888889999999999999999999954443332222222322211111 0000 111111222222222
Q ss_pred HHhccccchhhhhhcccCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHhhh
Q 011956 381 SFSLGMGGIPWVIMSEVFPIN---MKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVA 452 (474)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
.......|.. .+..|....+ .-|..+++......+|.++||.++|.+.+ .+..+...+.+......+-++.
T Consensus 377 ~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 377 LADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred HHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 2333334443 4455544444 67899999999999999999999999998 6666667777766666555443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=219.14 Aligned_cols=374 Identities=17% Similarity=0.109 Sum_probs=232.5
Q ss_pred HHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 011956 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 123 (474)
.++......+.....+..++.+..|+|- .++..|+.+.+.++.+++.++.|+++|.||||++++.+.++..+|+++++.
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 3333333334444455677889999994 588899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHH
Q 011956 124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (474)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~ 199 (474)
++|...++++..+.|+|.|.... ....++|..|.|.|....++...........++.++..+ +|||.|++..+..
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS 206 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence 99999999999999999877654 456689999999998887777766555555667776554 8999999988877
Q ss_pred HHHHHHhhccCCChhHHHhcCC---hhHHHHHHHHH-------------------hCC--CcchHHHHHHH-------HH
Q 011956 200 LVQLIGLCFIPESPRWLAKTGK---GIESEAALQRL-------------------RGA--DADISEEAAEI-------RE 248 (474)
Q Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~-------------------~~~--~~~~~~~~~~~-------~~ 248 (474)
.+.++..++...+|++...+++ ..+..+.++.+ ... +-+..+..... ..
T Consensus 207 ~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~ 286 (599)
T PF06609_consen 207 GIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVA 286 (599)
T ss_pred HHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHH
Confidence 6654443222222222222221 11211111111 000 00000000000 00
Q ss_pred --HHHHH-hhccchhHHHHhhH-hhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCC---cchhHHHHHHHHHHHHH
Q 011956 249 --YTETL-ERLSEGGILELFQR-KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGF---SGSIGMIAMVVIQIPMT 321 (474)
Q Consensus 249 --~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 321 (474)
.-|.. ..+++.-..+++|+ +.+...++..++....++......|.....++..... ..+......+++..++.
T Consensus 287 F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~ 366 (599)
T PF06609_consen 287 FVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGA 366 (599)
T ss_pred HHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHH
Confidence 01111 11222334567776 4444444444444443333333333333333333332 23467777888888888
Q ss_pred HHHHHHHhhcCCccee-eehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCC
Q 011956 322 LLGVLLMDKSGRRPLL-LVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPI 400 (474)
Q Consensus 322 ~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 400 (474)
.+.|.+..+++|-|.. +.+..++.+++.++...- . .+.... +...++.+.+.+.........++-..|+
T Consensus 367 ~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-~--------~n~~~~-i~~~~l~g~giG~~~~~~~~~~ql~~p~ 436 (599)
T PF06609_consen 367 VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-P--------DNKNAA-IAFLVLAGFGIGGILVPAIVIAQLIVPD 436 (599)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc-C--------CCcchH-HHHHHHHHHhHHHHHHHHHHeeEeeeCc
Confidence 8899999888775444 455555544444433221 0 111111 2223333333333344445666777899
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 401 NMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 401 ~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
+..|++.|+..+++.+|+.+|..+...+.
T Consensus 437 ~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 437 EDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999887654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=220.06 Aligned_cols=402 Identities=13% Similarity=0.040 Sum_probs=248.7
Q ss_pred hhcccccccccccccc-ccc--cCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhHHHHHHHHHHHHHHHHHHhh
Q 011956 50 VFGSAIGYSSPAQSGI-TND--LGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSK 125 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~i-~~~--~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~ 125 (474)
..++......+.+|.+ .++ +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.++++
T Consensus 21 ~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~ 100 (475)
T TIGR00924 21 WERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI 100 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333334555544 455 99999999999999999999999999999999 8999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCc---chhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHH
Q 011956 126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL---RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIP 198 (474)
Q Consensus 126 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~ 198 (474)
+++.++++|++.|+|.|...+...++++|++|+++ |+++.++++.+.++|.++||.+++.+ +||+.|++.++.
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~ 180 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVG 180 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999999998764 88899999999999999999998877 899999997765
Q ss_pred HHHHHHHhhccCC----ChhHHHhcCChhHHHHHHHH--------------HhCCCcchHHHHHHH-----HHHHHHHhh
Q 011956 199 CLVQLIGLCFIPE----SPRWLAKTGKGIESEAALQR--------------LRGADADISEEAAEI-----REYTETLER 255 (474)
Q Consensus 199 ~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-----~~~~~~~~~ 255 (474)
.++..+..++.++ .|+.. .+.+.++....... ....+.......... .........
T Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (475)
T TIGR00924 181 MVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAF 259 (475)
T ss_pred HHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444433332 22100 00000000000000 000000000000000 000000000
Q ss_pred ccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHc--C--CcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011956 256 LSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA--G--FSGSIGMIAMVVIQIPMTLLGVLLMDKS 331 (474)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 331 (474)
.+.....+-.|........+...+.+..+....+.++.+.....+.. + ...+.......+..++..++..++..|.
T Consensus 260 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l 339 (475)
T TIGR00924 260 KPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRL 339 (475)
T ss_pred hccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 00011111111122223333333444443333344444443332222 1 1244667777777777766655443344
Q ss_pred CCc-----cee--eehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchh
Q 011956 332 GRR-----PLL--LVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKG 404 (474)
Q Consensus 332 ~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 404 (474)
.|| ... .++.++.+++++.+.+.....+. ....+.++.+...++.+.......|..+++..+..|++.||
T Consensus 340 ~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~---~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g 416 (475)
T TIGR00924 340 GRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA---GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMG 416 (475)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 332 222 45666666666555543111110 01235555666666777777788899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHHhhheeC
Q 011956 405 SAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLV 455 (474)
Q Consensus 405 ~~~g~~~~~~~~g~~i~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 455 (474)
+.+|+......+|..+++.+.....+. +....+...+.++.+..++.++..
T Consensus 417 ~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 417 QMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877663 344445555555555555444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=226.20 Aligned_cols=326 Identities=17% Similarity=0.122 Sum_probs=225.3
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc----cCch-hHHHHHHHHHHHHHHHHHHhhh------HHHH
Q 011956 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRR-GTMGFSDIVCIIGWVIIVFSKA------AWWL 130 (474)
Q Consensus 62 ~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l 130 (474)
.+.+.+++|+++.+.|++.++..+..++..|+.|+++|| +||| +.++.+....+++.+++.+.++ ...+
T Consensus 23 ~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (437)
T TIGR00792 23 LFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA 102 (437)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 445778999999999999999999999999999999997 6774 4677888888888888877654 4566
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcC-CCCcchhHHHHHHHHHHHHHHHHHHHhc-----------cchhhHHHHHhHHH
Q 011956 131 DLGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIGA-----------FLNWRILALIGTIP 198 (474)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~-----------~l~wr~~f~~~~~~ 198 (474)
++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.. ..+||+.+.+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 77889999998888888888888887 4688999999988888787665543321 22799999998888
Q ss_pred HHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHH
Q 011956 199 CLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (474)
Q Consensus 199 ~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (474)
.++..+. .+..+|+++.. +.++ +++....+.++++++++.++......
T Consensus 183 ~~~~~~~~~~~~~e~~~~~----~~~~---------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (437)
T TIGR00792 183 GVVSLIICFFGTKERYSEI----PKNI---------------------------EKKLSLKQIFKALFKNDQLLILCLAY 231 (437)
T ss_pred HHHHHHHHHcCCEecCCCC----Cccc---------------------------ccCCCHHHHHHHHhCCHHHHHHHHHH
Confidence 7765444 45567654210 0000 00000122345666777776666655
Q ss_pred HHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhh
Q 011956 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLF 357 (474)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (474)
++............++|.....+ .....+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--- 307 (437)
T TIGR00792 232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--- 307 (437)
T ss_pred HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---
Confidence 55555444333334444443332 11122345556678889999999999999999998888777666666555432
Q ss_pred cccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 358 QDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
..+........++.+.......+..++...|..| ++.+|.+.|+.+....+|..+++.+.|.+.+
T Consensus 308 --------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 308 --------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred --------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222233333333333445666777777754 4678999999999999999999999999988
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=213.71 Aligned_cols=357 Identities=11% Similarity=0.116 Sum_probs=223.3
Q ss_pred hccccccccccccccccccCCChhh-HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHH
Q 011956 51 FGSAIGYSSPAQSGITNDLGLSVAE-YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWW 129 (474)
Q Consensus 51 ~~~~~~~~~~~~~~i~~~~~~s~~~-~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (474)
.+.+. +.+.|.+.+|+|+|.+| .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+++.+++++++.
T Consensus 41 ~R~n~---s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~ 117 (511)
T TIGR00806 41 FRPGE---SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWH 117 (511)
T ss_pred hhchH---HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 44566799999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHh---HHHHHHHH
Q 011956 130 LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIG---TIPCLVQL 203 (474)
Q Consensus 130 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~---~~~~~~~~ 203 (474)
+.+.|++.|+++|..+ +...++..|+|+++|+++.++...+..+|.+++++++..+ |||+-+.+. .....+++
T Consensus 118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~ 196 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSV 196 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999999999999998877 898755443 33334456
Q ss_pred HHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHH-HHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHH
Q 011956 204 IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAE-IREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL 282 (474)
Q Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (474)
+..+++|..++.+.-+++.+.......+......+...+... .+......-+.-...+++..+++......+-..
T Consensus 197 ~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa---- 272 (511)
T TIGR00806 197 FLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWV---- 272 (511)
T ss_pred HHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHH----
Confidence 666888866664433322111000000000000000000000 000000000111223334444443333322223
Q ss_pred HhhccchhhHhcHHHHHHHcCC----cchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhc
Q 011956 283 QQFGGVNGIAFYASSIFISAGF----SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ 358 (474)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (474)
...+++..+..|.+.+.+.... -++..-.+..+.+.+..+..|++-.++.+-.-+.++.....-+.+++....
T Consensus 273 ~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~--- 349 (511)
T TIGR00806 273 FNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQ--- 349 (511)
T ss_pred HHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhc---
Confidence 3333466677777777654422 233555556666777778888875544332222222222222222222111
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011956 359 DLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 425 (474)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 425 (474)
..+.+.......++...+. ...++....+++....+.-|...|+.++..-+-..+-..+.
T Consensus 350 ------t~~Iw~~Y~~yvlf~~~y~-flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 350 ------SHDIWVLYVTYVLFRGIYQ-FLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred ------ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 0233334444444444443 44455556666666667779999988887766655544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=218.74 Aligned_cols=322 Identities=15% Similarity=0.076 Sum_probs=215.6
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchhH-HHHHHHHHHHHHHHHHHh---hh
Q 011956 56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRGT-MGFSDIVCIIGWVIIVFS---KA 126 (474)
Q Consensus 56 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~ 126 (474)
+..++..|.+.+|+|+|.++.|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 445677888999999999999999766 555555 99999999998 89887 567788888877777777 46
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----h--------hhHHHHH
Q 011956 127 AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N--------WRILALI 194 (474)
Q Consensus 127 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~--------wr~~f~~ 194 (474)
++.+....++.+++.+...+...+++.|++|+|+|+++.++...+.++|.++++.++..+ + ||.+|++
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence 667777888889998989999999999999999999999999999999999999988655 6 9999999
Q ss_pred hHHHHHHHHHHhhc-cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhh---H
Q 011956 195 GTIPCLVQLIGLCF-IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKY---A 270 (474)
Q Consensus 195 ~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 270 (474)
.++..++..+..++ .||+++. +.+. + ++ +++.+..++++++++. .
T Consensus 163 ~ai~~l~~~~~~~~~~~e~~~~---~~~~-~----------------~~-----------~~~~~~~~~~~~~~~~~~~~ 211 (356)
T TIGR00901 163 TALLILPGLLVTLFLAKEPQED---ASVP-K----------------PL-----------TQAVLKPIREFFQRKNMIQA 211 (356)
T ss_pred HHHHHHHHHHHHHHhccCCCcc---cccc-h----------------hH-----------HHHHHHHHHHHHHhcCchHH
Confidence 88877776555443 4654220 0000 0 00 0001123455555554 3
Q ss_pred HHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHH-HHHHHHHHHHHHHHhhcCCcceeeehhhhHHH
Q 011956 271 HSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMV-VIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCL 346 (474)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 346 (474)
+......++............+.|. .+.+.+.. ......+ +..+++.++++++.||+|+|+.+..+.++.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 212 LLLLLLIVLYKLGDSAATVLTTLFL----LDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3333333333333333333444444 33455444 2333333 46678899999999999999887777766665
Q ss_pred HHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHH
Q 011956 347 GCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSW 415 (474)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 415 (474)
....+.+.......... .....+......++.+.......+...++..|.+|+++||+..|+.+...+
T Consensus 288 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 288 TNAGFVWLASNGHHDGI-TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHhcCccccc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 55444332110000000 001223333333344444445667778999999999999999999887764
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=233.38 Aligned_cols=295 Identities=16% Similarity=0.159 Sum_probs=209.8
Q ss_pred HHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh
Q 011956 46 CGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK 125 (474)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 125 (474)
+..+......+..++.++.++++|+++..+.|++.+.+.+++.++.++.|+++||+|||+++.++.++++++++++++.+
T Consensus 40 ~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 40 CAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 34444445567778899999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ---------------------------------------------------hHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 011956 126 ---------------------------------------------------AAWWLDLGRLLVGYGMGLLSYVVPVYIAE 154 (474)
Q Consensus 126 ---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 154 (474)
.+..++++|+++|+|.+..++...+++.|
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d 199 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD 199 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence 24567899999999999999999999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHhccc--------------------------hhhHHHHHhHHHHHHHHHHhhc
Q 011956 155 ITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------------------NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 155 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l--------------------------~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
++|+++|+++++++..+..+|.++|+++++.+ +||..|++.+++.++..+.+++
T Consensus 200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888654 1677788888887776655666
Q ss_pred cCCC-hhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhcc
Q 011956 209 IPES-PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGG 287 (474)
Q Consensus 209 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (474)
+|++ |+... +.+.+..++. ... ...+. ... ......+.....++++++++.++...+..++........
T Consensus 280 ~p~~lp~~~~-~~~~~~~~~~--~~~-~~~~~--~~~----~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~ 349 (633)
T TIGR00805 280 FPKALPKEGK-RVNVDVHETE--KLE-KSEDK--SRK----KNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGY 349 (633)
T ss_pred CccccCCccc-ccchhhhhhh--ccc-ccccc--cch----hhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 6665 32110 0000000000 000 00000 000 000001112335677888888888888777777766666
Q ss_pred chhhHhcHHHHHHHcCCcchhHHHHHHH-HHHHHHHHHHHHHhhcCC--cceeeehhhhHHHHHHH
Q 011956 288 VNGIAFYASSIFISAGFSGSIGMIAMVV-IQIPMTLLGVLLMDKSGR--RPLLLVSAAGTCLGCLL 350 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~ 350 (474)
..++|.|+...++......+.......+ +.+++.+++|+++||++. |+.+..+.+...++.+.
T Consensus 350 ~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 350 ITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 6666666665554444444445444444 567899999999999984 45555555555554433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=200.26 Aligned_cols=338 Identities=15% Similarity=0.097 Sum_probs=197.0
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (474)
+.++-+.+..-.|.+.+.|++++.+.++.+|.++||+|||+++.+|++..++...+.+.++|+..+++.|++.|+..| .
T Consensus 59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-n 137 (451)
T KOG2615|consen 59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-N 137 (451)
T ss_pred hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-c
Confidence 334444456678999999999999999999999999999999999999999999999999999777777999999988 5
Q ss_pred hhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccchh------hHHHHH----hHHHHHH-HHHHhhccCCCh
Q 011956 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNW------RILALI----GTIPCLV-QLIGLCFIPESP 213 (474)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~w------r~~f~~----~~~~~~~-~~~~~~~~~~~p 213 (474)
.....++++|.+++|+|+++++..++.+++|.++||.+|+++.- +++|.. ..++... .....+++||+-
T Consensus 138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 67788999999999999999999999999999999999998821 223333 2222222 233457789983
Q ss_pred hHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHh
Q 011956 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAF 293 (474)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (474)
...+++.+..+..+..+.. .+..... ..++....+..+..+. ........+-.+++... +.....
T Consensus 218 ~~rk~~~~~~~~~~~~~~~--------~~~~~~~-~~~~v~~lrn~p~~~~--i~~~~i~~l~~~ly~~l----~s~~~~ 282 (451)
T KOG2615|consen 218 PLRKRNDEHSTLQEAADDR--------LALLKFA-RIFKVAALRNPPLLDF--ISVLRIFGLHYFLYLEL----FSGLEN 282 (451)
T ss_pred cchhhcccccchhhhhhhh--------hhhcchh-hhhhhhhhcCccccch--HHHHHHHHHHHHHHHHH----HHHHHh
Confidence 2211110001000000000 0000000 0000000000000000 00111111222222221 222222
Q ss_pred cHHHH-HHHcCC---cchhHHHHHHHHHHHHHHHHHHHHhhcC--CcceeeehhhhHHHHHHHHHHHhhhcccccccccc
Q 011956 294 YASSI-FISAGF---SGSIGMIAMVVIQIPMTLLGVLLMDKSG--RRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKAT 367 (474)
Q Consensus 294 ~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (474)
+...+ .+..+. +.+......++.+.+.........||.. .+-.+..+...+.-..+++.. ..
T Consensus 283 t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~------------~~ 350 (451)
T KOG2615|consen 283 TVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL------------AR 350 (451)
T ss_pred hHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc------------cc
Confidence 22222 122233 3344444555555444444444444433 111222222222222222221 11
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 368 PFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
....+.....+..+......+.....+....|+++||+++|+..+.+.++-++||.+.|.+..
T Consensus 351 ~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 351 TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 222222222333333334455667888999999999999999999999999999999998887
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=188.05 Aligned_cols=344 Identities=19% Similarity=0.182 Sum_probs=263.7
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 011956 38 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG 117 (474)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 117 (474)
++.+..+.+..+..+...+.++|.++++++|+|+|.+..|+++++..+...+.+++..++++|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45555556666777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHH
Q 011956 118 WVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILA 192 (474)
Q Consensus 118 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f 192 (474)
.++-... +.+.++.+-.+.|.|.+......++++.+.||++ -+..+++|.+..++|..+++.+.-.+ +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9999887 7788889999999999999999999999999755 79999999999999877776555443 799999
Q ss_pred HHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHH
Q 011956 193 LIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHS 272 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (474)
.+-+.++++.++.|+.-...++. ...+.+..+-..++|+|.-|.
T Consensus 169 ~~WAl~allAl~~WlPq~~r~~~------------------------------------~~~~~~~~~~~~vw~~~~aW~ 212 (395)
T COG2807 169 GFWALLALLALLIWLPQALREQA------------------------------------ASIATKLVSVRKVWRSPLAWQ 212 (395)
T ss_pred HHHHHHHHHHHHHHhhhcccccc------------------------------------cccccccccccccccCchhHH
Confidence 99999998888877643211100 001112233455778888888
Q ss_pred HHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcC-CcceeeehhhhHHHHH
Q 011956 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSG-RRPLLLVSAAGTCLGC 348 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~ 348 (474)
..+.+.+..+. ++....|+|.++.+.|.+.. .......+..++.++..+.+.+|.. +|+........+.++.
T Consensus 213 vtLfmGlqS~~----~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 213 VTLFMGLQSLL----YYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred HHHHHHhhHHH----HHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 88777777765 45566677777888887765 6777788889999999999999765 4555555556666666
Q ss_pred HHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccC-CCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011956 349 LLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVF-PINMKGSAGSLVTLVSWLGSWIISFTFNF 427 (474)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~i~g~ 427 (474)
+.+.+.. ...++.. .+..+...++.+|.....+.+.. .++..+.-+|+.+.++++-+..||.+.|+
T Consensus 289 ~G~~~~P----------~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~ 355 (395)
T COG2807 289 VGLLLAP----------GQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF 355 (395)
T ss_pred HHHHHhh----------hhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence 6665431 1122111 23344444556666666665554 45778888999999999999999999999
Q ss_pred HHh-hhccch
Q 011956 428 LMK-WSSTGT 436 (474)
Q Consensus 428 ~~~-~~~~~~ 436 (474)
+.| .+.+..
T Consensus 356 lhDa~gsw~~ 365 (395)
T COG2807 356 LHDATGSWSA 365 (395)
T ss_pred HHHhcCChHH
Confidence 999 444333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=204.57 Aligned_cols=376 Identities=15% Similarity=0.087 Sum_probs=242.0
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh------hhHHHHHHH
Q 011956 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS------KAAWWLDLG 133 (474)
Q Consensus 60 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~ 133 (474)
...|.+++++|+|.++.+++.+.. .....++++.|++.||+|+|+++.++.+++++++++++++ ++++.+++.
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~ 126 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVY 126 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 445568999999999999998874 4556788899999999999999999999999999999997 689999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHH-HHHHhccc--hhhHHHHHhHHHHHHHHHH-hhcc
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSM-TYLIGAFL--NWRILALIGTIPCLVQLIG-LCFI 209 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~l--~wr~~f~~~~~~~~~~~~~-~~~~ 209 (474)
|++.|+|.+...+.....+.+||| ++||++.++...+.++|.++ +++...++ +|+..|++.+++.++..++ ..++
T Consensus 127 r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 127 NGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhe
Confidence 999999999999999999999997 67999999999999999975 55555555 8999888888877764443 3444
Q ss_pred --CCChhHHHhcCChhHHHHHHHHHhCC--------------------------------------Cc------------
Q 011956 210 --PESPRWLAKTGKGIESEAALQRLRGA--------------------------------------DA------------ 237 (474)
Q Consensus 210 --~~~p~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~------------ 237 (474)
|+.+++..++++.+++++..++..+. +.
T Consensus 206 r~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~ 285 (591)
T PTZ00207 206 RLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIV 285 (591)
T ss_pred eCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33333332332222222211110000 00
Q ss_pred ----------------------chHHHHHHH-H---HHHHHH--------h---hccchhHHHHhhHhhHHHHHHHHHHH
Q 011956 238 ----------------------DISEEAAEI-R---EYTETL--------E---RLSEGGILELFQRKYAHSLIVGVGLM 280 (474)
Q Consensus 238 ----------------------~~~~~~~~~-~---~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (474)
+.+.+..+. + +..+.+ + .....++++.+++..+|.+++.+++.
T Consensus 286 lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg 365 (591)
T PTZ00207 286 LTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCC 365 (591)
T ss_pred HHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHh
Confidence 000000000 0 000000 0 00112677777788888887777776
Q ss_pred HHHhhccchhhHhcHHHHHHHc-CC--cc--h-hHHHHHHHHHHHHHHHHHHHHhhcCCcc----eee-eh---hhhHHH
Q 011956 281 VLQQFGGVNGIAFYASSIFISA-GF--SG--S-IGMIAMVVIQIPMTLLGVLLMDKSGRRP----LLL-VS---AAGTCL 346 (474)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~--~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~----~~~-~~---~~~~~~ 346 (474)
........+. +.++.+.. +. +. . .+....++++.+|++..|.++....+|+ .-. +. ..++.+
T Consensus 366 ~g~gl~~~~N----~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~ 441 (591)
T PTZ00207 366 VGAHFVIIFN----ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCII 441 (591)
T ss_pred hCchheeeec----HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHH
Confidence 6654444333 44444443 33 22 2 2678889999999999998873322222 211 11 111333
Q ss_pred HHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHH-HHHH
Q 011956 347 GCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII-SFTF 425 (474)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~-~~i~ 425 (474)
+.+++... .+...+....++.+...+...++....++|++. ++-|+-+-+.....-+|..+- -.+.
T Consensus 442 ~~lll~~~------------~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~ 508 (591)
T PTZ00207 442 TMLTLFLT------------LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLY 508 (591)
T ss_pred HHHHHHHH------------CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHH
Confidence 33333331 111233333444445555556777799999999 889998888888888888776 5688
Q ss_pred HHHHhhh--------------ccchhHHHHHHHHHHHHhhhee
Q 011956 426 NFLMKWS--------------STGTFFAFSAICSLTVLFVAKL 454 (474)
Q Consensus 426 g~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 454 (474)
|.++|.. ...++.++++++.+..+....+
T Consensus 509 G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 509 GEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred HHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 8888721 1235777777777776654443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=199.52 Aligned_cols=362 Identities=13% Similarity=0.015 Sum_probs=227.0
Q ss_pred HHHHHHHHhhccccccccccccccccccCCChhhHHHH--HHHHHHHHHHHHHHHH-HhhhccCchhHHHHHHHHH-HHH
Q 011956 42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLF--GSILTIGAMIGAIMSG-KIADYIGRRGTMGFSDIVC-IIG 117 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~--~s~~~l~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~-~~~ 117 (474)
+.+....+..+...+...|.+|.+.+|.|.|.+++|++ .+.+.+...+.+|+++ +..||+||||..+++..+. ++.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 44455567778888888899999999999999999997 4677888888888884 4799999999875555332 212
Q ss_pred HHHHH-H--hhh-HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhh
Q 011956 118 WVIIV-F--SKA-AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWR 189 (474)
Q Consensus 118 ~~~~~-~--~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr 189 (474)
....+ + ..+ ...++..-++.++..+...+...++..|..++++++...+....+..+|.++++...+.+ |||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 22222 1 222 334445556666777777888888888999888889889999888899999998665544 999
Q ss_pred HHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhh
Q 011956 190 ILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKY 269 (474)
Q Consensus 190 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (474)
.+|++.++..++..+..++++|+++. +++.+ +.+..+.++.+|+|.
T Consensus 164 ~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~~~~~~~~~l~~~~ 209 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLWLKDRAVA---SPEAP-------------------------------LARRASLFRFFRRPL 209 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcC---ccccc-------------------------------hhhHHHHHHHHcCcC
Confidence 99999988877755555555443210 00000 001123556777777
Q ss_pred HHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHH-HHHHHHHHHHHHHHhhcCCcceeeehhhhHH
Q 011956 270 AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMV-VIQIPMTLLGVLLMDKSGRRPLLLVSAAGTC 345 (474)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 345 (474)
.+......++........+...+ .+..+.+.+.. ......+ ...+++.++.|++.||+++|+.+..+....+
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~----~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 285 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSK----LYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAG 285 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666555555544433333333 33344455554 3333333 3566778899999999999988776655443
Q ss_pred HHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCC-CchhhHHHHHHHHHHHHHHHHHHH
Q 011956 346 LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPI-NMKGSAGSLVTLVSWLGSWIISFT 424 (474)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~i~~~i 424 (474)
+..+......... . ............+.+.......+..+....+..++ +.+++.+++.+...++|..++|.+
T Consensus 286 ~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~ 359 (390)
T TIGR02718 286 SLALLWFAQAAFW-----L-APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSI 359 (390)
T ss_pred HHHHHHHHHHHcc-----c-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3222221110000 0 01111112222222222222233444555555555 889999999999999999999999
Q ss_pred HHHHHhhhccchhHHHHHHHHHH
Q 011956 425 FNFLMKWSSTGTFFAFSAICSLT 447 (474)
Q Consensus 425 ~g~~~~~~~~~~~~~~~~~~~~~ 447 (474)
.|.+.|..++...+..+..+.+.
T Consensus 360 ~G~l~~~~G~~~~f~~~~~~~l~ 382 (390)
T TIGR02718 360 AGYLTDRFGYAGGFLSGTVLAVL 382 (390)
T ss_pred HHHHHHHHccHHHHHHHHHHHHH
Confidence 99999954443444444433333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=201.25 Aligned_cols=355 Identities=14% Similarity=0.100 Sum_probs=214.6
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhhh
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGYGM 141 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~ 141 (474)
.+.+++|++.++.+++.+.+........+++|+++|| +|||+++.++.++.+++..++++++ +.+.++++|+++|++.
T Consensus 47 yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~ 126 (500)
T PRK09584 47 YLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGN 126 (500)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 4678999999999999988887777777899999999 5999999999999999999998874 5667778899999999
Q ss_pred hhhhhhhhhhhhhcCCCCc--chhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh----hccCC
Q 011956 142 GLLSYVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL----CFIPE 211 (474)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~----~~~~~ 211 (474)
|...+...+++.|++|+++ |..++++++.+.++|..++|.+++++ |||+.|++.++..++.++.. ..++|
T Consensus 127 g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 127 GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 9999999999999998654 45678899999999999999999877 89999999776544433322 22333
Q ss_pred ChhHHHhcCChhHHHHH-----------HHHHhCCCcchHHHHHHH---HHHHHHHhhccchhHHHHhhHhhHHHHHHHH
Q 011956 212 SPRWLAKTGKGIESEAA-----------LQRLRGADADISEEAAEI---REYTETLERLSEGGILELFQRKYAHSLIVGV 277 (474)
Q Consensus 212 ~p~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (474)
.++. ..+++.+..... .......+.+........ ........... ...+.-+++.... +..
T Consensus 207 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~ 281 (500)
T PRK09584 207 YGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAF--AMKGAARRKMIVA--FIL 281 (500)
T ss_pred CCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHH--HHH
Confidence 2110 000001110000 000000000000000000 00000000000 0001111111111 111
Q ss_pred HHHHHHhhccchhhHhcHHHHHHH------cCC--cchhHHHHHHHHHHHHHHHHHHHHhhcCC----cceeeehhhhHH
Q 011956 278 GLMVLQQFGGVNGIAFYASSIFIS------AGF--SGSIGMIAMVVIQIPMTLLGVLLMDKSGR----RPLLLVSAAGTC 345 (474)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~----~~~~~~~~~~~~ 345 (474)
++.....+..+...+.++...... .+. ..+.......+..++..++..++-+|.++ .+.+.++.++.+
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~ 361 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCS 361 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHH
Confidence 122222222333344443332211 121 23466666776666776666555555544 455566777777
Q ss_pred HHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011956 346 LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 425 (474)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 425 (474)
++.+.+.......+.+ ...+.++.+...++.+.......|...+++.+..|++.||..+|+......+|..++..+.
T Consensus 362 l~f~~l~~~~~~~~~~---~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 362 GAFLVLPLGAKFANDA---GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHHHHHhcCCC---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766665532211100 0122335556666677777788899999999999999999999988777777777766665
Q ss_pred H
Q 011956 426 N 426 (474)
Q Consensus 426 g 426 (474)
+
T Consensus 439 ~ 439 (500)
T PRK09584 439 N 439 (500)
T ss_pred H
Confidence 4
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-23 Score=193.09 Aligned_cols=381 Identities=15% Similarity=0.115 Sum_probs=242.8
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhh----ccCchhHHHHH-HHHHHHHHHHHHHhhhHHH-
Q 011956 56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGRRGTMGFS-DIVCIIGWVIIVFSKAAWW- 129 (474)
Q Consensus 56 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~~- 129 (474)
+...+..+.+.+++|.+..+.+++..+..+...+.+|+.|+++| |+||||.++.+ .....++.++.+++++++.
T Consensus 21 ~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~ 100 (477)
T TIGR01301 21 ALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHL 100 (477)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 33344555567889999999999999999999999999999999 59999998774 6666667777777766532
Q ss_pred ----------------HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHhccc-----
Q 011956 130 ----------------LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLR--GGFTTVHQLMICIGVSMTYLIGAFL----- 186 (474)
Q Consensus 130 ----------------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~l----- 186 (474)
++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++..
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~ 180 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI 180 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 23333344457777888889999999998865 6899999999999999999888653
Q ss_pred --------------hhhHHHHHhHHHHHHHH-HHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 011956 187 --------------NWRILALIGTIPCLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTE 251 (474)
Q Consensus 187 --------------~wr~~f~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (474)
+.|+.|++.++..++.. +..+..+|.|.... ++.++ + +.++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~--~~~~~--~---~~~~~~--------------- 238 (477)
T TIGR01301 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS--DDFIN--S---EAAPPS--------------- 238 (477)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc--ccchh--h---hccccc---------------
Confidence 45778888777776644 44566888753110 00000 0 000000
Q ss_pred HHhhccchhHHHHhh-----HhhHHHHHHHHHHHHHHhhccchhhHhcHH-HHHHHcCCc----------chhHHHHHHH
Q 011956 252 TLERLSEGGILELFQ-----RKYAHSLIVGVGLMVLQQFGGVNGIAFYAS-SIFISAGFS----------GSIGMIAMVV 315 (474)
Q Consensus 252 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~ 315 (474)
+......++++++ .+..+...+..++.++..+......+.|.. .+++..... ..+......+
T Consensus 239 --~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~ 316 (477)
T TIGR01301 239 --KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSV 316 (477)
T ss_pred --ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 0000111222222 245566666666666665554444444443 233321111 1144555556
Q ss_pred HHHHHHHHHHHHHhhcCC-cceeeehhhhHHHHHHHHHHHhhhccc--------ccccccch-HHHHHHHHHHHHHHhcc
Q 011956 316 IQIPMTLLGVLLMDKSGR-RPLLLVSAAGTCLGCLLAALSFLFQDL--------QQWIKATP-FLALVGVLVYTGSFSLG 385 (474)
Q Consensus 316 ~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~ 385 (474)
...+.+++..++.+|+|+ |+....+.++.++++....+.....+. ........ ....+..+...|.....
T Consensus 317 ~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~ 396 (477)
T TIGR01301 317 VLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI 396 (477)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH
Confidence 666777888899999985 566577777777777776654321100 00000001 23344444445555556
Q ss_pred ccchhhhhhcccCCC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hhccchhHHHHHHHH-HHHHhhheeCcCCCC
Q 011956 386 MGGIPWVIMSEVFPI--NMKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICS-LTVLFVAKLVPETKG 460 (474)
Q Consensus 386 ~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 460 (474)
...++++++++..|+ +..|..+|+.|.+..+...+.....|.+.+ .+.....+.++++.. +.++...+.+|+.+.
T Consensus 397 ~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 397 TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 678888999999884 566999999999999999999998888666 223344455555444 445556666666543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-25 Score=182.07 Aligned_cols=354 Identities=16% Similarity=0.115 Sum_probs=236.7
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhHHHHHHH
Q 011956 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDI 112 (474)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~ 112 (474)
..++...+..+|+..|...++.........+..+|.+++.++..++.+.|+....+.+.++|++.|| +|.|..-++-+.
T Consensus 39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~ 118 (459)
T KOG4686|consen 39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI 118 (459)
T ss_pred hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence 4456667777777778777888777777778888999999999999999999999999999999996 788877776666
Q ss_pred HHHHHHHHHH---HhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-hh
Q 011956 113 VCIIGWVIIV---FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-NW 188 (474)
Q Consensus 113 ~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-~w 188 (474)
+..++.++.+ .++.+|.+.++|++.|+|.-....+..++...||..||.+.++|+.....-+|..+-..+..++ +.
T Consensus 119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~ 198 (459)
T KOG4686|consen 119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT 198 (459)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence 6777777765 4789999999999999999888899999999999999999999999999999976654444333 11
Q ss_pred hHHHH-------------H---hHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 011956 189 RILAL-------------I---GTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTET 252 (474)
Q Consensus 189 r~~f~-------------~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (474)
-.-++ + .....++++...-+.. +++++.+.+-.+.-
T Consensus 199 ~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D------------~rAerilh~e~g~~---------------- 250 (459)
T KOG4686|consen 199 MGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSD------------DRAERILHLEEGFL---------------- 250 (459)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------hHHHHHHhhhcCcc----------------
Confidence 00011 0 0111111111111111 11111111100000
Q ss_pred HhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 011956 253 LERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSG 332 (474)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 332 (474)
.+..+-.-..-+ .|.+|...+.+.+.....+-++..-+.+.+..++.+..+++......-....+..++.|.++||+|
T Consensus 251 -Ge~pkLtdv~~f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G 328 (459)
T KOG4686|consen 251 -GEEPKLTDVNTF-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYG 328 (459)
T ss_pred -cCCccccccccc-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhc
Confidence 000000000111 466777777777777777777777777777777666666666666666677777889999999999
Q ss_pred CcceeeehhhhHH-HHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHH
Q 011956 333 RRPLLLVSAAGTC-LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT 411 (474)
Q Consensus 333 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 411 (474)
++...+.+..+.. .+-..+.+.. .+++..... .+..........|..+..+.|+++.|++.|.++
T Consensus 329 ~n~~wv~~a~~~tl~~H~~l~Ft~----------lsPy~~m~~----lGLsysllAcslWP~va~~vpE~qLGTaygf~q 394 (459)
T KOG4686|consen 329 FNLWWVASACILTLLGHSGLFFTF----------LSPYTSMTF----LGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQ 394 (459)
T ss_pred ceehhHHHHHHHHHHHhhhHHhhh----------ccHHHHHHH----HhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHH
Confidence 9877665444333 2333333321 222222211 121111122234677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 011956 412 LVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 412 ~~~~~g~~i~~~i~g~~~~~ 431 (474)
.+.++|-++.|.+.|.+.|.
T Consensus 395 sIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 395 SIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred HHHhhhhhHHhhhhheeecC
Confidence 99999999999999999983
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=182.19 Aligned_cols=330 Identities=17% Similarity=0.211 Sum_probs=223.9
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 011956 56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-RRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGR 134 (474)
Q Consensus 56 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 134 (474)
+...|.++..-++.|.|..|+|.+.+...+...++++++|.++||++ +|+++.++.++.++........++++.+++.-
T Consensus 19 G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~ 98 (400)
T PF03825_consen 19 GAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIM 98 (400)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33456777788899999999999999999999999999999999986 57888888888888777778888999998888
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCcc--hhHHHHHHHHHHHHHHH-HHHHhccchh---hHHHHHhHHHHHHHHHHhhc
Q 011956 135 LLVGYGMGLLSYVVPVYIAEITPKNLR--GGFTTVHQLMICIGVSM-TYLIGAFLNW---RILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~-~~~l~~~l~w---r~~f~~~~~~~~~~~~~~~~ 208 (474)
++..+......|...++..+...++++ |+.-.+-+.++.++... +..+.+..++ .+.+++.+...++.....+.
T Consensus 99 ~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~ 178 (400)
T PF03825_consen 99 LLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF 178 (400)
T ss_pred HHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888764322 44444444444444322 2333333322 34566666655555555566
Q ss_pred cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccc
Q 011956 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (474)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (474)
+|+.|+....+++ .++....+..+++|+|.....++..++........+
T Consensus 179 lp~~~~~~~~~~~-------------------------------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~ 227 (400)
T PF03825_consen 179 LPKTPPKRSAKES-------------------------------VKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYY 227 (400)
T ss_pred CCCCccccccCCC-------------------------------cccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 7877621000000 001112233567888887776666666655544434
Q ss_pred hhhHhcHHHHHHHcC-C---cchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccccc
Q 011956 289 NGIAFYASSIFISAG-F---SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWI 364 (474)
Q Consensus 289 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (474)
...+.| +++.+ . ..+.......+..++.-...+++.+|+|.++++.++.+..++=..++...
T Consensus 228 ~f~~~y----l~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~---------- 293 (400)
T PF03825_consen 228 TFFSIY----LQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF---------- 293 (400)
T ss_pred HHHHHH----HHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 444444 44444 2 22345556667888888999999999999999988888777777766653
Q ss_pred ccchHHHHHHHH----HHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 011956 365 KATPFLALVGVL----VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLV-SWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 365 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~i~g~~~~~ 431 (474)
..+.+...... +..+............++.+..|++.|+++.++++.. ..+|..+|..+.|++.|.
T Consensus 294 -~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 294 -SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred -cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 12222222111 1233332334455568999999999999999999876 469999999999999993
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=178.80 Aligned_cols=359 Identities=13% Similarity=0.102 Sum_probs=213.3
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhhh
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGYGM 141 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~ 141 (474)
.+.+++|+++.+.+.+.+.+.....++++++|+++||+ ||||++.++.++.+++.++.+..+ +...++++..+.++|.
T Consensus 35 yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~ 114 (493)
T PRK15462 35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY 114 (493)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 35677999999999999999999999999999999999 999999999999999988776543 2233444455556667
Q ss_pred hhhhhhhhhhhhhcCCCC--cchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCCChhH
Q 011956 142 GLLSYVVPVYIAEITPKN--LRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPESPRW 215 (474)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~~p~~ 215 (474)
|...+...++++|.+|++ +|..+.++...+.++|..++|.+.+++ |||+.|.+.++..++.++..++..+....
T Consensus 115 G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~ 194 (493)
T PRK15462 115 GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTH 194 (493)
T ss_pred ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 777788889999999876 689999999999999999999999887 89999998766544444333322111000
Q ss_pred H-HhcCChh-HHHHHHHH-----HhC------CCcchHHHHHH-HHH--H-H-----HHHhhccchhHHHHhhHh--hHH
Q 011956 216 L-AKTGKGI-ESEAALQR-----LRG------ADADISEEAAE-IRE--Y-T-----ETLERLSEGGILELFQRK--YAH 271 (474)
Q Consensus 216 ~-~~~~~~~-~~~~~~~~-----~~~------~~~~~~~~~~~-~~~--~-~-----~~~~~~~~~~~~~~~~~~--~~~ 271 (474)
. ..+++.. +.+..... ... ......++... .-. . . -.... .+.+-.+ |++ ...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e--r~r~~~~~ 271 (493)
T PRK15462 195 TRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYR-KAENQKQ--RKELGLIV 271 (493)
T ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHH--HhhHHHHH
Confidence 0 0000000 00000000 000 00000000000 000 0 0 00000 0000000 111 111
Q ss_pred HHHHHHHHHHHHhhccchhhHhcHHHHHHHc--C--CcchhHHHHHHHHHHHHHHHHHHHHhhcCC--cce-----eeeh
Q 011956 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISA--G--FSGSIGMIAMVVIQIPMTLLGVLLMDKSGR--RPL-----LLVS 340 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~-----~~~~ 340 (474)
.+.+...+++..+....+.+..|.....+.. + ..+++......+..++.+++..++-.|..| |.. ..++
T Consensus 272 ~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g 351 (493)
T PRK15462 272 TLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALG 351 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 2222222233333333334444443332211 2 334577778888888888877777666532 211 3456
Q ss_pred hhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHH-HHHHH
Q 011956 341 AAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVS-WLGSW 419 (474)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~ 419 (474)
.++++++.+.+.+.....+.+. ..+..+++...++......+..|+..+.++++.|++.+|..+|+..... .+|..
T Consensus 352 ~~~~g~~f~~l~~~~~~~~~~~---~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~ 428 (493)
T PRK15462 352 LGLMSAGFCILTLSARWSAMYG---HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANY 428 (493)
T ss_pred HHHHHHHHHHHHHHHhhcCCCC---CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666654332221110 1344556666677778888999999999999999999999999986533 46666
Q ss_pred HHHHHHHHH
Q 011956 420 IISFTFNFL 428 (474)
Q Consensus 420 i~~~i~g~~ 428 (474)
++..+.+..
T Consensus 429 ~~g~~~~~~ 437 (493)
T PRK15462 429 LAGVIADQT 437 (493)
T ss_pred HHHHHHHHh
Confidence 666555544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=190.38 Aligned_cols=324 Identities=11% Similarity=0.066 Sum_probs=210.5
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc----cCc-hhHHHHHHHHHHHHHHHHHHhhh------HHHH
Q 011956 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGR-RGTMGFSDIVCIIGWVIIVFSKA------AWWL 130 (474)
Q Consensus 62 ~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~l 130 (474)
...+.+++|+++.+.|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ ++.+
T Consensus 33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 445778899999999999999999999999999999998 787 45566777777777766555543 4556
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcC-CCCcchhHHHHHHHHHHHHHHHHHHHh----ccc-------hhhHHHHHhHHH
Q 011956 131 DLGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIG----AFL-------NWRILALIGTIP 198 (474)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~----~~l-------~wr~~f~~~~~~ 198 (474)
++..++.+.+.......-.++.+|+. ++++|++..++...+..+|..+++.+. ..+ +|+..+.+.+++
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii 192 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL 192 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 66677777777777777788999988 557899888888777777766665432 221 688888777777
Q ss_pred HHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHH
Q 011956 199 CLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (474)
Q Consensus 199 ~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (474)
.++..+. .+..+|.++. .+ + ++.....+.+++++++.++......
T Consensus 193 ~~v~~~~~~~~~~e~~~~----~~--~----------------------------~~~~~~~~~~~~~~n~~~~~l~~~~ 238 (444)
T PRK09669 193 GVVLFFCCFFMTKERYTP----EV--D----------------------------NSSSVWKDLKLLLGNSQWRIMFIFN 238 (444)
T ss_pred HHHHHHHHhCCeEEecCC----CC--c----------------------------CCCCHHHHHHHHhCCchHHHHHHHH
Confidence 6664443 3444553210 00 0 0001123455667777777665555
Q ss_pred HHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhh
Q 011956 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLF 357 (474)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (474)
++.............+|.....+. ............+..+++.++.+++.||+|+|+....+....+++.+.+.+..
T Consensus 239 ~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-- 315 (444)
T PRK09669 239 VVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-- 315 (444)
T ss_pred HHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC--
Confidence 544343322223333343333321 11112344445567778888999999999999988776654443333222210
Q ss_pred cccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 358 QDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
..+........++.+.......+..++.+.|..+ ++..|...|..+....+|..+++.+.|.+.+
T Consensus 316 --------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 316 --------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333334444444556777788888764 3446778899999999999999999999988
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=185.22 Aligned_cols=362 Identities=16% Similarity=0.055 Sum_probs=219.0
Q ss_pred HhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccC-----chhHHHHHHHHHH-HHHHHHH
Q 011956 49 YVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-----RRGTMGFSDIVCI-IGWVIIV 122 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~ 122 (474)
+..+...-......|.+.+++|+++++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ +.....+
T Consensus 36 ~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~ 114 (468)
T TIGR00788 36 FVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLP 114 (468)
T ss_pred HHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcc
Confidence 34444422234556668889999999999999999999999666 999999998 7787888877763 4333334
Q ss_pred HhhhHHHHH-HHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhH---HHHHHHHHHHHHHHHHHHhccc----hhhHHHHH
Q 011956 123 FSKAAWWLD-LGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGF---TTVHQLMICIGVSMTYLIGAFL----NWRILALI 194 (474)
Q Consensus 123 ~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~ 194 (474)
..++..... +.+++.+++.+...++.-+++.|..+ +++... .+......++|.++++.+++.+ +||..|++
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~ 193 (468)
T TIGR00788 115 GKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLI 193 (468)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 345544444 48899999999999999999999998 544433 3333333446777777776665 89999999
Q ss_pred hHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHH
Q 011956 195 GTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLI 274 (474)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (474)
.+.+.++..+..++++|++.....+.+.++ . .... ..........+......++.+++|..+...
T Consensus 194 ~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~-----------~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l 258 (468)
T TIGR00788 194 TAALLLLQLFVSNLSKERRAFVRPRIGTYL-E-----------MNMA---LLTLGVLANVKVQILGLRGAIQLLEIAKPL 258 (468)
T ss_pred HHHHHHHHHHHHHhcccccccccccccccc-h-----------hhhh---hhhhhHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 888877766666777886311000000000 0 0000 000000000011112344445666666554
Q ss_pred HHHHH-HHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHH
Q 011956 275 VGVGL-MVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAAL 353 (474)
Q Consensus 275 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 353 (474)
...++ .... ........++.+...+..+...+......+++.+++..+.+++.+|++.|+.+.++.++.+++.+....
T Consensus 259 ~fifl~~~~~-~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~ 337 (468)
T TIGR00788 259 IFIFLSYANL-PGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLI 337 (468)
T ss_pred HHHHHHHhhc-CCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCcee
Confidence 44444 2221 111111111333333333444457777788999999999999999999998887777766665544321
Q ss_pred HhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 354 SFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
.......... ....+.......+-....+....+. ..++++..|++.+|+.+++.+.+.++|..+++.++|.+.+
T Consensus 338 l~~~~~~~~g-i~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 338 LVKRWNLAFG-ISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred eeeccccccC-CCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100000000 0011111111222222222333333 6899999999999999999999999999999999999988
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-21 Score=169.32 Aligned_cols=389 Identities=15% Similarity=0.099 Sum_probs=268.1
Q ss_pred CchhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHH
Q 011956 32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD 111 (474)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~ 111 (474)
+..+++|.++.+.++.++.+++....++++......-++ +.+..-|+.-+|++.+....+++-|+.|++|-|..+.++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 456778888888888888888888777887777777788 8888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh------hHH--HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 011956 112 IVCIIGWVIIVFSK------AAW--WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG 183 (474)
Q Consensus 112 ~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 183 (474)
.+.+++..+-..+. .++ ....+..+.+.+.-........+..-||+++||..+..+-..+..+|.+++.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 99999999877653 344 6678889999988887777788999999999999999999999999999998887
Q ss_pred ccc----------hhhH--HHHHhHHHHHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 011956 184 AFL----------NWRI--LALIGTIPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYT 250 (474)
Q Consensus 184 ~~l----------~wr~--~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (474)
..+ .|.. .|+....+..+.++. .+..++.|+.-.... + .
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s---------------------------~-~ 248 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSAS---------------------------Q-A 248 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchh---------------------------H-h
Confidence 766 4554 344444444332222 233344332100000 0 0
Q ss_pred HHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHc---CCcchhHHHHHHHHHHHHHHHHHHH
Q 011956 251 ETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA---GFSGSIGMIAMVVIQIPMTLLGVLL 327 (474)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l 327 (474)
...+..-..+.++.++++.+....+++.+..... +.++..+...+... +..++.......++++++..+.|.+
T Consensus 249 ~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F----~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii 324 (480)
T KOG2563|consen 249 ALQDASFPKSIKSCFKNRQFIILAICYGIGLGLF----NSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII 324 (480)
T ss_pred hhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHH----HHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence 0001223456778888888877777666655543 33333333233222 3456688888899999999999999
Q ss_pred HhhcCCc-ceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhH
Q 011956 328 MDKSGRR-PLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSA 406 (474)
Q Consensus 328 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 406 (474)
.||.+.- .++.+......++.. ........ ....+.+.......+.+..+..|+..-...|..-|..-++.
T Consensus 325 ~Dktk~fk~~~~v~~~~~~v~~~-~l~~~t~~-------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tS 396 (480)
T KOG2563|consen 325 ADKTKKFKLTTLVLYLFALVGTL-MLLTCTLF-------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTS 396 (480)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH-HHHHhhcc-------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCccc
Confidence 9998763 334333333333321 11111111 22233444555566777778889888888888766888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hh----ccchhHHHHHHHHHHHHhhheeCcCCCCC
Q 011956 407 GSLVTLVSWLGSWIISFTFNFLMK-WS----STGTFFAFSAICSLTVLFVAKLVPETKGR 461 (474)
Q Consensus 407 ~g~~~~~~~~g~~i~~~i~g~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (474)
.|+.+..+++-+.+-..+.+...+ .+ ....-+.....+.+..++..++.++.++.
T Consensus 397 sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 397 SGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred ceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 999999999999999999998887 33 22333444444444445555544443333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=186.34 Aligned_cols=331 Identities=13% Similarity=0.039 Sum_probs=207.6
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhh----ccCc-hhHHHHHHHHHHHHHHHHHHhhh------HHHHH
Q 011956 63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGR-RGTMGFSDIVCIIGWVIIVFSKA------AWWLD 131 (474)
Q Consensus 63 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~l~ 131 (474)
..+.+.+|+++.++|.+..+..+.-++..|+.|+++| |+|| |+.++.+.+..+++..+....++ +..++
T Consensus 31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~ 110 (473)
T PRK10429 31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC 110 (473)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 3466778999999999999999999999999999999 6699 66667788887877666644331 33455
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhcC-CCCcchhHHHHHHHHHHHHHHHHHHHhc----cc-------hhhHHHHHhHHHH
Q 011956 132 LGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIGA----FL-------NWRILALIGTIPC 199 (474)
Q Consensus 132 ~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~----~l-------~wr~~f~~~~~~~ 199 (474)
+.-++.+++.....+.-.++..|.. ++++|.+..++-..+.++|..+.+.+.. .+ +|+....+.+++.
T Consensus 111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~ 190 (473)
T PRK10429 111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF 190 (473)
T ss_pred HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 6667778888888888999999998 6889999988866666666444433221 11 5677666666665
Q ss_pred HHHHH-HhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHH
Q 011956 200 LVQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (474)
Q Consensus 200 ~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (474)
++..+ ..+..+|.++....+.+ ++++...+..++.+++++.++..+...+
T Consensus 191 ~~~~~~~~~~~~e~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~n~~~~~ll~~~~ 241 (473)
T PRK10429 191 IVSTIITLRNVHEVYSSDNQVSA-----------------------------EGSHLTLKDIVALIYKNDQLSCLLGMAL 241 (473)
T ss_pred HHHHHHHHcCceecCCccccccc-----------------------------cccCCCHHHHHHHHhcCHHHHHHHHHHH
Confidence 55333 33446665320000000 0000011222344556666665555555
Q ss_pred HHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhc
Q 011956 279 LMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ 358 (474)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (474)
+............++|.....+. ....+.......+..+++.++.+++.||+|+|+.+..+..+.+++.+.+.......
T Consensus 242 ~~~~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
T PRK10429 242 AYNIASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA 320 (473)
T ss_pred HHHHHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 54443333333333443332221 11122444555577888889999999999999998777665555544443221110
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 359 DLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
..+........++.+.......+..+++.+|..+ .+..|...|.......++..+++.+.|.+.+
T Consensus 321 -------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 321 -------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222233333333445566678888854 4556779999999999999999999999987
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=181.06 Aligned_cols=323 Identities=14% Similarity=0.143 Sum_probs=199.9
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc----CchhHH-HHHHHHHHHHHHHHHHhh-------hHHHH
Q 011956 63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI----GRRGTM-GFSDIVCIIGWVIIVFSK-------AAWWL 130 (474)
Q Consensus 63 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~-------~~~~l 130 (474)
+.+.+.+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++....+ ..+.+
T Consensus 33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (448)
T PRK09848 33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA 112 (448)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence 357788899999999999999999999999999999996 777654 556555554444432111 12334
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcCCC-CcchhHHHHHHHH-----HHHHHHHHHHHhccc------hhhHHHHHhHHH
Q 011956 131 DLGRLLVGYGMGLLSYVVPVYIAEITPK-NLRGGFTTVHQLM-----ICIGVSMTYLIGAFL------NWRILALIGTIP 198 (474)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~g~~~~~~l~~~l------~wr~~f~~~~~~ 198 (474)
++.-++.+++.+...+...++..+..++ ++|.+..+.-..+ ..++..++|.++... +|.....+.+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~ 192 (448)
T PRK09848 113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA 192 (448)
T ss_pred HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 4556777888888888777777776654 5688776665543 334555666665433 121111222223
Q ss_pred HHHHH-HHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHH
Q 011956 199 CLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (474)
Q Consensus 199 ~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (474)
+++.. +.....||+++. +.+ +......++++++++.+....+..
T Consensus 193 ~~~~~~~~~~~~~e~~~~---~~~--------------------------------~~~~~~~~~~l~~n~~f~~~~~~~ 237 (448)
T PRK09848 193 GMVLYFICFKSTRENVVR---IVA--------------------------------QPSLKISLQTLKRNRPLFMLCIGA 237 (448)
T ss_pred HHHHHHHHHcCcEeccCC---Ccc--------------------------------CCCHHHHHHHHhCCchHHHHHHHH
Confidence 22222 222334554210 000 001122356677888877776666
Q ss_pred HHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhh
Q 011956 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLF 357 (474)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (474)
++............++|....++..............++.+++.++.+++.||+++|+.+..+..+.+++.+.+.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~-- 315 (448)
T PRK09848 238 LCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS-- 315 (448)
T ss_pred HHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC--
Confidence 666655554445556665544432221112333333556778889999999999999998888877777666554321
Q ss_pred cccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCC-------chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 358 QDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPIN-------MKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
..+.+......++.+.......+...+...|..|.+ .+|...|+.+....+|..+++.+.+.+.+
T Consensus 316 --------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 316 --------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred --------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222223233333333444566667777776543 46999999999999999999999999877
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=177.94 Aligned_cols=326 Identities=19% Similarity=0.203 Sum_probs=245.2
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhh----ccCchhH-HHHHHHHHHHHHHHHHHh-h-------hHH
Q 011956 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGRRGT-MGFSDIVCIIGWVIIVFS-K-------AAW 128 (474)
Q Consensus 62 ~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~-------~~~ 128 (474)
.+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+||||. +++|.+..+++.+++... + ...
T Consensus 25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 44577888999999999999999999999999999999 8997655 467888888888777765 4 233
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCC-CCcchhHHHHHHHHHHHHHHHHHHHhccc-----------hhhHHHHHhH
Q 011956 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAFL-----------NWRILALIGT 196 (474)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----------~wr~~f~~~~ 196 (474)
.+.+.-++..++.......-.++..|..+ +++|.+..+.-..+..+|..+...+...+ +|++..++.+
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~ 184 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA 184 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence 45677777799999999999999999997 46899999998888888876544443332 4888888888
Q ss_pred HHHHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHH
Q 011956 197 IPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV 275 (474)
Q Consensus 197 ~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (474)
++.++..+. .+..+|+++.. ..++++..-++.+++++++|.++....
T Consensus 185 iv~~v~~~i~~~~~ke~~~~~--------------------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~ 232 (428)
T PF13347_consen 185 IVGLVFFLITFFFVKERSVEV--------------------------------TEQEKKISLRDSLRSLFRNRPFRILLL 232 (428)
T ss_pred HHHHHHhhhhhheeeeccccc--------------------------------cccccccccccchhhhcccchHHHHHH
Confidence 777775444 45567721100 001111223445777888888888888
Q ss_pred HHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHh
Q 011956 276 GVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (474)
..++............++|.....+... ..+.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 8777777766666677777777766653 334566677788899999999999999999999999998888888776642
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 356 LFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFL 428 (474)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~~ 428 (474)
..+...........+..........++...|..+ ++..|...|+.+....++..+++.+.+.+
T Consensus 312 ----------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 312 ----------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ----------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 1344555555555565556666777888888875 35579999999999999999999999988
Q ss_pred Hh
Q 011956 429 MK 430 (474)
Q Consensus 429 ~~ 430 (474)
.+
T Consensus 382 l~ 383 (428)
T PF13347_consen 382 LA 383 (428)
T ss_pred HH
Confidence 87
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-19 Score=166.77 Aligned_cols=359 Identities=18% Similarity=0.149 Sum_probs=233.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHH-HHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHhhhhhhhhhhhh
Q 011956 74 AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTM-GFSDIVCIIGWVIIVFS-K-AAWWLDLGRLLVGYGMGLLSYVVPV 150 (474)
Q Consensus 74 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~ 150 (474)
+..++..++..+..++..|+.|.++|+-|+||.+ .+...+..+++.+..+. + +++...+.-++.-++.+.....-.+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999877665 44455555566666663 3 4444445555666777888888999
Q ss_pred hhhhcCCCCcc--------------------------hhHHHHHHHHHHHHHHHHHHHhccc------------hhhHHH
Q 011956 151 YIAEITPKNLR--------------------------GGFTTVHQLMICIGVSMTYLIGAFL------------NWRILA 192 (474)
Q Consensus 151 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~l~~~l------------~wr~~f 192 (474)
++.|..+++++ ++..+.-.....+|.++.-.+.-.+ +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999988 8888888888888887776655433 247778
Q ss_pred HHhHHHHHH-HHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHH
Q 011956 193 LIGTIPCLV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAH 271 (474)
Q Consensus 193 ~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (474)
.+.++.-++ .+...+++||.|+....+......... -++-...+++..|.|...
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g-------------------------~~~l~~t~k~~~~~~~~~ 284 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFG-------------------------FKRLWRTFKEIRKLRQLF 284 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHH-------------------------HHHHHHHHHHHHhChHHH
Confidence 877776544 666677788886420000000000000 001112334444455555
Q ss_pred HHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc--ceeeehhhhHHHHHH
Q 011956 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR--PLLLVSAAGTCLGCL 349 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~ 349 (474)
..+++.++..-...........|....++....+.........+..++|.++.|++.||+|.| +++..+.....+..+
T Consensus 285 ~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 285 LFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 666666665555444444555555544444433344777788889999999999999999998 666555544433222
Q ss_pred HHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 350 LAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
.-.+....... ...+.+.+....++.+.+.+...+..-++.+|+.|+++.+.-.|++.......+.+||.+.|.+.
T Consensus 365 ~g~~G~~~~~~----g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~ 440 (477)
T PF11700_consen 365 YGLFGFWPSFF----GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT 440 (477)
T ss_pred HHHHHhhhccc----CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111000 01233345555666777777888888999999999999999999999999999999999999999
Q ss_pred h-hhccchhHHHHHHHHHHHHhhheeCcCCCCC
Q 011956 430 K-WSSTGTFFAFSAICSLTVLFVAKLVPETKGR 461 (474)
Q Consensus 430 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (474)
+ .+....-+....+..+.+++++..++..|.+
T Consensus 441 ~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 441 DATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 9 3333333333344444444444555554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=172.87 Aligned_cols=364 Identities=17% Similarity=0.159 Sum_probs=216.2
Q ss_pred cccccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHH--HHH-HHHHHh----hhHH
Q 011956 57 YSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCI--IGW-VIIVFS----KAAW 128 (474)
Q Consensus 57 ~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~--~~~-~~~~~~----~~~~ 128 (474)
...|..|. +.++.|+|.+|+|.+.++..+...+.+|+.|.++||+|.||-++..+.+.. .+. +...+. .|.+
T Consensus 25 i~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~ 104 (412)
T PF01306_consen 25 IFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFW 104 (412)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-H
T ss_pred HHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455553 445689999999999999999999999999999999997776554433322 122 222222 2332
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHH
Q 011956 129 -WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 129 -~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~ 204 (474)
..+++-...|+......|..-+++.++... .+.-.|-.-...++|.+++..+++.+ +-+..||+....+++..+
T Consensus 105 lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~l 182 (412)
T PF01306_consen 105 LGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLL 182 (412)
T ss_dssp HHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHH
Confidence 222333334444445556666665554421 12223333444555555555555555 567788887766665444
Q ss_pred Hhhcc-CCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHH
Q 011956 205 GLCFI-PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQ 283 (474)
Q Consensus 205 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (474)
+.++. |+.++.....+...+ +.++.+.....+++|+|.+|...+........
T Consensus 183 ll~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~ 235 (412)
T PF01306_consen 183 LLLLLKPDVPPQAEVADALGA---------------------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAI 235 (412)
T ss_dssp HHHSS---SSSSS-SSTTSSS---------------------------------HHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcCchhhhhhccccc---------------------------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 44333 333321111100000 00011123356778888888776665555444
Q ss_pred hhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccc
Q 011956 284 QFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDL 360 (474)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (474)
+...-...+.|...+++..+.+. +.......+..++.-.+.+++.+|+|.|+.++++..++.+=....++.
T Consensus 236 Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~------ 309 (412)
T PF01306_consen 236 YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA------ 309 (412)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh------
Confidence 33333334444444333222222 256666667888888999999999999999999988888888877763
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hhccchhH
Q 011956 361 QQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLV-TLVSWLGSWIISFTFNFLMK-WSSTGTFF 438 (474)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~~~~-~~~~~~~~ 438 (474)
++.+.+...-.+.+.-.........-++.+.+|++..++...+. +...++|..+.+.+.|.+.| .|....++
T Consensus 310 ------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyl 383 (412)
T PF01306_consen 310 ------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYL 383 (412)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHH
Confidence 34444444444444433334444468999999999989999885 67788999999999999999 55566788
Q ss_pred HHHHHHHHHHHhhheeCcCCCCC
Q 011956 439 AFSAICSLTVLFVAKLVPETKGR 461 (474)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~ 461 (474)
+++.+.+...++..+.+++.++.
T Consensus 384 img~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 384 IMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHHHHHHHHheeeecCCCcc
Confidence 88888777777777777665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=164.72 Aligned_cols=327 Identities=17% Similarity=0.165 Sum_probs=242.0
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc----cCc-hhHHHHHHHHHHHHHHHHHHhhh------HHHHHH
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGR-RGTMGFSDIVCIIGWVIIVFSKA------AWWLDL 132 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~ 132 (474)
.+.+.+|+++..+|.+..+--+--++.-|+.|.+.|| +|| |+.++.+.+..++.+.++-.+++ ....++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 4678899999999999999999999999999999995 787 55668888989999988888773 344566
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCC-CCcchhHHHHHHHHHHHHHHHHHHHh----ccc-------hhhHHHHHhHHHHH
Q 011956 133 GRLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIG----AFL-------NWRILALIGTIPCL 200 (474)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~----~~l-------~wr~~f~~~~~~~~ 200 (474)
.-.+.+++.......-.++.++..+ ++||.+..++-..+.++|..+...+. ..+ ||+....+.+++++
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 7788999999998888899999885 67899999999999888866544333 222 78887777777777
Q ss_pred HHHHHhh-ccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHH
Q 011956 201 VQLIGLC-FIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL 279 (474)
Q Consensus 201 ~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (474)
+..+..+ -.+|.+... +... +..+.+.+..+..+++++.+....+...+
T Consensus 198 i~~l~~~~~v~ER~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~ 247 (467)
T COG2211 198 ILLLFCFFNVKERVVET--QPTK----------------------------TGVKLKLKDSFLLIFKNRPLLLLLLMNLL 247 (467)
T ss_pred HHHHHHHHHhhcccCcc--ccCc----------------------------ccccccHHHHHHHHHccchHHHHHHHHHH
Confidence 6555443 466664200 0000 00011112233456677777777666666
Q ss_pred HHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcc
Q 011956 280 MVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQD 359 (474)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (474)
.+...........+|....+++..............+.+++.++..++.+|+|+|++...+.++.+++.+++.+..
T Consensus 248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~---- 323 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP---- 323 (467)
T ss_pred HHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc----
Confidence 6666555566667777776666655566777777778888899999999999999999999998888888887753
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 360 LQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
..+....++..++.+.......++.++.++|..+ .+..|...|...++.-+|.+++..+.|+..+
T Consensus 324 ------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 324 ------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred ------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444455555556677888899988863 4667899999999999999999999999987
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-19 Score=171.54 Aligned_cols=321 Identities=12% Similarity=0.030 Sum_probs=202.9
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc----cCchh-HHHHHHHHHHHHHHHHHHhhh------HHHHHH
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRRG-TMGFSDIVCIIGWVIIVFSKA------AWWLDL 132 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~l~~ 132 (474)
.+.+.+|+++..+|.+..+.-+--++.-|+.|+++|| +|||| .++++.+..+++.+++-..++ ...+++
T Consensus 35 fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~ 114 (460)
T PRK11462 35 FYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI 114 (460)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence 4667889999999999999999999999999999995 78864 456777788887776655542 344566
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCC-CCcchhHHHHHHHHHHHHHHHHHHHhcc----c-------hhhHHHHHhHHHHH
Q 011956 133 GRLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAF----L-------NWRILALIGTIPCL 200 (474)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~----l-------~wr~~f~~~~~~~~ 200 (474)
.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+... + +|+....+.+++.+
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~ 194 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF 194 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 6677788888888888899999987 7889999999999988887766555322 1 47776666666655
Q ss_pred HHHHHh-hccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHH
Q 011956 201 VQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL 279 (474)
Q Consensus 201 ~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (474)
++.... ...+|.++. +.+ +...+..++..++++.++......++
T Consensus 195 i~~~i~~~~~kE~~~~---~~~--------------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~ 239 (460)
T PRK11462 195 MMLAFCFFTTKERVEA---PPT--------------------------------TTSMREDLRDIWQNDQWRIVGLLTIF 239 (460)
T ss_pred HHHHHHHhcceeccCC---Ccc--------------------------------CCCHHHHHHHHhCChHHHHHHHHHHH
Confidence 544333 334554310 000 00011234455666666555544444
Q ss_pred HHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcc
Q 011956 280 MVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQD 359 (474)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (474)
.............+|.....+... ..+.......+..+++.++++++.||+++|+....+.....+..+.+.+..
T Consensus 240 ~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~---- 314 (460)
T PRK11462 240 NILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP---- 314 (460)
T ss_pred HHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc----
Confidence 444333333444455544433211 123455666778888999999999999998876544433333222222110
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 360 LQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
......... ..++.+.......+..++...|..+ .+..|...+.......+|..+++.+.|.+.+
T Consensus 315 -----~~~~~~~~~-~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 315 -----MQASITMFV-FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred -----hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112222 2222233333344555566666654 3445666677778899999999999999887
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=160.06 Aligned_cols=268 Identities=13% Similarity=0.064 Sum_probs=182.2
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---------------
Q 011956 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------- 186 (474)
Q Consensus 122 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l--------------- 186 (474)
+...+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+..+++|..++|.+++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999998743
Q ss_pred -----hhhHHHHHhHHHHHHHHHHhhc--cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccch
Q 011956 187 -----NWRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEG 259 (474)
Q Consensus 187 -----~wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (474)
+||++|++.+.+.++..+.+.+ +||.++ + +.++. .+.+..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~-~~~~~----------------------------~~~~~~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----A-DVARV----------------------------SSGDTT 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----c-ccccc----------------------------cccccc
Confidence 5889998766665554444433 344311 0 00000 000000
Q ss_pred hHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHH--HHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCccee
Q 011956 260 GILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSI--FISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLL 337 (474)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 337 (474)
..++.++++..+...+..+++...+.+...+.+.|+.+. ++......+........+.++|+++++++.||+++|+.+
T Consensus 132 ~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l 211 (310)
T TIGR01272 132 QKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL 211 (310)
T ss_pred chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 112345566666666666666656666666666666432 122222334778888889999999999999999998887
Q ss_pred eehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHH
Q 011956 338 LVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLG 417 (474)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 417 (474)
..+..+.+++.++.... ....... .....+.+.....|...+...+..| ++.+++.++. ....+|
T Consensus 212 ~~~~~l~~~~~~l~~~~------------~~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~G 276 (310)
T TIGR01272 212 AFNAFLAVLLSIGAALT------------HGYVAMW-FVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVG 276 (310)
T ss_pred HHHHHHHHHHHHHHHHc------------CCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhc
Confidence 76666655554333321 1121222 2234455556677887788888877 4567777775 677899
Q ss_pred HHHHHHHHHHHHh-hhccchh
Q 011956 418 SWIISFTFNFLMK-WSSTGTF 437 (474)
Q Consensus 418 ~~i~~~i~g~~~~-~~~~~~~ 437 (474)
+++.|.+.|.+.| .+....+
T Consensus 277 g~i~P~l~G~lad~~g~~~a~ 297 (310)
T TIGR01272 277 GAIVPLLQGSLADCLGIQLAF 297 (310)
T ss_pred chHHHHHHHHHHHhccchHHH
Confidence 9999999999999 4433333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-18 Score=149.54 Aligned_cols=350 Identities=15% Similarity=0.114 Sum_probs=229.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHH-HHHHHHHHHHHHHHHHhhh--HH-HHHHHHHHHHhhhhhhhhhh
Q 011956 73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTM-GFSDIVCIIGWVIIVFSKA--AW-WLDLGRLLVGYGMGLLSYVV 148 (474)
Q Consensus 73 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~~~~~ 148 (474)
.+..+...++..+..++.+|+.|.++|+.|+||.. -....+..++..+..++++ ++ ..++.-.+..++.....+.-
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 45678899999999999999999999999976555 5555555666666667655 44 44556778888888889999
Q ss_pred hhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHh------c----------------cchhhHHHHHhHHHHHH-HHHH
Q 011956 149 PVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG------A----------------FLNWRILALIGTIPCLV-QLIG 205 (474)
Q Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~------~----------------~l~wr~~f~~~~~~~~~-~~~~ 205 (474)
.+++.+..++++-++..++-.....+|.++.-... + ...=|..+.+.++.-++ .+..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 99999999998777777665555555554443332 1 00457777777776555 4555
Q ss_pred hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhh
Q 011956 206 LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (474)
Q Consensus 206 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (474)
++..++.++-. ..+... ....-++-..++++..+++.....+++.++..-...
T Consensus 217 ~~~v~~~~~~~-----~~~~~~----------------------l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~ 269 (438)
T COG2270 217 ILNVHDAEKIS-----SPPPTA----------------------LRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVN 269 (438)
T ss_pred Hhccccccccc-----ccchHH----------------------HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHH
Confidence 56666654300 000000 000011122345555555655556665555554433
Q ss_pred ccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccc
Q 011956 286 GGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIK 365 (474)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (474)
.....-..|....++....+.........+..++|+++.|++.||++.|+++..+.++..+.++...+.
T Consensus 270 til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~----------- 338 (438)
T COG2270 270 TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL----------- 338 (438)
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-----------
Confidence 333333333333333333333366677778999999999999999999988888877776666655542
Q ss_pred cchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHH
Q 011956 366 ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAIC 444 (474)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~ 444 (474)
..........++.+.+.++.++..-++..+.+|+++.++..|+++..+......||.+.+.+.+ .+....-....++.
T Consensus 339 -~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl 417 (438)
T COG2270 339 -EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL 417 (438)
T ss_pred -cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 2233334444555666667778888999999999999999999999999999999999999998 44434444444444
Q ss_pred HHHHHhhheeCcCCCCC
Q 011956 445 SLTVLFVAKLVPETKGR 461 (474)
Q Consensus 445 ~~~~~~~~~~~~~~~~~ 461 (474)
....+..+...|..+++
T Consensus 418 l~iGl~~L~~v~~~~~~ 434 (438)
T COG2270 418 LLIGLLLLLRVKVPGRR 434 (438)
T ss_pred HHhhHhhEEeecCCCCc
Confidence 45555556666655443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=150.33 Aligned_cols=385 Identities=16% Similarity=0.098 Sum_probs=249.9
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhhhh
Q 011956 69 LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMGLLS 145 (474)
Q Consensus 69 ~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 145 (474)
+|+++++..-+.+.|.--.-+...++|+++||+ |+|+++..|.++..+|.++.+.++ +...++++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 459999999999999998999999999999995 999999999999999999999884 78889999999999999999
Q ss_pred hhhhhhhhhcCCCCc--chhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCCC-------
Q 011956 146 YVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPES------- 212 (474)
Q Consensus 146 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~~------- 212 (474)
+...++++|.+|+++ |-..++++..+.++|..++|++.+++ ||+..|.+.++-....++..+..++.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~ 215 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV 215 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCC
Confidence 999999999998654 57788999999999999999998887 89999999888777666555443321
Q ss_pred --hhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHH-------HH-----HHHhhccchhHHHHhhHhhHHHHHHHHH
Q 011956 213 --PRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE-------YT-----ETLERLSEGGILELFQRKYAHSLIVGVG 278 (474)
Q Consensus 213 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (474)
|..+..+........................+.... .. .+..+.++.. .+--|-...-++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~ 294 (498)
T COG3104 216 PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAV 294 (498)
T ss_pred CCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHH
Confidence 111100110000000000000000000000000000 00 0000111111 11112223334455555
Q ss_pred HHHHHhhccchhhHhcHHHHHHHc----CCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc--ce-----eeehhhhHHHH
Q 011956 279 LMVLQQFGGVNGIAFYASSIFISA----GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR--PL-----LLVSAAGTCLG 347 (474)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~-----~~~~~~~~~~~ 347 (474)
+++..+....+.+..|.....+.. ...+++.-+...+.-++..++..++..|.+++ .. ...+..++..+
T Consensus 295 iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~ 374 (498)
T COG3104 295 IFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLG 374 (498)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHH
Confidence 556665566677777777665544 23455778888888888888888887774433 22 22344444555
Q ss_pred HHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011956 348 CLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNF 427 (474)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~ 427 (474)
.+++.........+ ....+.++.+...++......+..|+..+++.+..|+...+..++........|..++..+.+.
T Consensus 375 fl~l~~~~~~~~~~--~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 375 FLILLLAGIWFGGP--SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHHHHHHhhcCC--CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 55544432221110 1135566667777778888889999999999999999999999998888888888888777773
Q ss_pred -------HHhhhccchhHHHHHHHHHHHHhhheeCc
Q 011956 428 -------LMKWSSTGTFFAFSAICSLTVLFVAKLVP 456 (474)
Q Consensus 428 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (474)
.........++.++.+..+..+......|
T Consensus 453 ~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 453 TAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 22233444566666666665555544433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=158.49 Aligned_cols=379 Identities=13% Similarity=0.130 Sum_probs=216.0
Q ss_pred HHHHHHHHhhcccccccccc-cccccc-ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHHH
Q 011956 42 FVAVCGSYVFGSAIGYSSPA-QSGITN-DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR-RGTMGFSDIVCIIGW 118 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~~~~ 118 (474)
.+..+.+++.....+++.+. .|.+++ |.+.+.+..|++.++..++.+++++..|+...|.+. |+.++.|.++..++.
T Consensus 37 ~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~ 116 (488)
T KOG2325|consen 37 YLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGN 116 (488)
T ss_pred HHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHH
Confidence 33444455555556555554 343333 477788899999999999999999999999999987 888999999999999
Q ss_pred HHH-HHh---h-hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc------h
Q 011956 119 VII-VFS---K-AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------N 187 (474)
Q Consensus 119 ~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l------~ 187 (474)
++. ++. + ..+.++++|++.|+|.| .....-+|+++....++|.++++..+.+..+|.++||.++..+ |
T Consensus 117 llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G 195 (488)
T KOG2325|consen 117 LLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG 195 (488)
T ss_pred HHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc
Confidence 988 332 2 57789999999999987 5678889999998899999999999999999999998887655 2
Q ss_pred -----------hhHHHHHhHHHHHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhh
Q 011956 188 -----------WRILALIGTIPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLER 255 (474)
Q Consensus 188 -----------wr~~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (474)
+..+-|+.+++.++.++. .++++|.++....++...+ ++.+...++ .+
T Consensus 196 ~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~-------------------~~~~~~~~~-~~ 255 (488)
T KOG2325|consen 196 FMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV-------------------EEEKSDIEK-VK 255 (488)
T ss_pred eEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc-------------------hhhccchhh-hc
Confidence 335667777777775444 4557776542211111000 000000000 00
Q ss_pred ccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch----hHHHHHHHHHHHHHHHHHHHH-hh
Q 011956 256 LSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS----IGMIAMVVIQIPMTLLGVLLM-DK 330 (474)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~l~-d~ 330 (474)
..+.++ ......++..+...+......+..+......++..+..+. ......++..+.-.+...... .+
T Consensus 256 ~~~~d~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~ 329 (488)
T KOG2325|consen 256 KPKLDW------VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGK 329 (488)
T ss_pred cCChhH------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000000 1111111112222222222122223333333333333222 222222222222222222222 23
Q ss_pred cCCcceeeehhhhHHHHHHHHHHHhhhcc--ccccc--------------cc---chHHHHHH-HHHHHHHHhccccchh
Q 011956 331 SGRRPLLLVSAAGTCLGCLLAALSFLFQD--LQQWI--------------KA---TPFLALVG-VLVYTGSFSLGMGGIP 390 (474)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 390 (474)
+.+|+.+..++.....+..+......... .+..+ +. .+.+.+.. ..++.+..........
T Consensus 330 i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~ 409 (488)
T KOG2325|consen 330 IDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTAL 409 (488)
T ss_pred hccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchH
Confidence 34566666654444443333322211111 10000 00 11111111 1222222222223344
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 011956 391 WVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLT 447 (474)
Q Consensus 391 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~ 447 (474)
.+.-+|...|+++++..+++......+..++|.+........+....+.+....++.
T Consensus 410 ~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~ 466 (488)
T KOG2325|consen 410 DTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLV 466 (488)
T ss_pred HHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHH
Confidence 578888899999999999999999999999999998888854445555444443333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-19 Score=173.99 Aligned_cols=385 Identities=17% Similarity=0.156 Sum_probs=3.0
Q ss_pred HHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 011956 43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV 122 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 122 (474)
..++..+......+.....++.+++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.+++++++++++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence 33444445566667777888899999999999999999999999999999999999998888999999999999998886
Q ss_pred Hhh--------------------------------------------------hHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011956 123 FSK--------------------------------------------------AAWWLDLGRLLVGYGMGLLSYVVPVYI 152 (474)
Q Consensus 123 ~~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i 152 (474)
+-+ -++.+++++++.|+|....++...+|+
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 510 135578889999999999999999999
Q ss_pred hhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc--------------------------hhhHHHHHhHHHHHHHHHHh
Q 011956 153 AEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------------------NWRILALIGTIPCLVQLIGL 206 (474)
Q Consensus 153 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l--------------------------~wr~~f~~~~~~~~~~~~~~ 206 (474)
-|..++++-+...|+......+|.++|.++++.+ .|..-|++.+.+.++..+.+
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888754 26666777777777766666
Q ss_pred hccCCC-hhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhh
Q 011956 207 CFIPES-PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (474)
Q Consensus 207 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (474)
+++|+. |+....+++.+..++ +..+...+.. +..+..+.....-+.-....++++++|.+....++.........
T Consensus 247 ~~FPk~lp~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~ 322 (539)
T PF03137_consen 247 FFFPKKLPGTSERQEEKESSER---KEEDSDKDSF-KDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVS 322 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCCccCCCcccccchhhhhhc---chhhhhhhcc-cccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 666665 332111110000000 0000000000 00000000011122334556778888877777777766666666
Q ss_pred ccchhhHhcHHHHHHHcCCcchhHH-HHHHHHHHHHHHHHHHHHhhcC--CcceeeehhhhHHHHHHH---HHHHhhh--
Q 011956 286 GGVNGIAFYASSIFISAGFSGSIGM-IAMVVIQIPMTLLGVLLMDKSG--RRPLLLVSAAGTCLGCLL---AALSFLF-- 357 (474)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~-- 357 (474)
+.....|-|++..++.....++... .....+..+|.+++|++.+|++ .|+.+....+...++.+. ..+....
T Consensus 323 G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~ 402 (539)
T PF03137_consen 323 GFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNP 402 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCC
Confidence 6666666666666655544444333 3333467788899999999875 344444444433333332 1111000
Q ss_pred ------cccc------cc------------------------cc-cchHHHHHHHHHHHHHHhccccchhhhhhcccCCC
Q 011956 358 ------QDLQ------QW------------------------IK-ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPI 400 (474)
Q Consensus 358 ------~~~~------~~------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 400 (474)
.+.+ .. .+ ........+..++..+..............+.+|+
T Consensus 403 ~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~ 482 (539)
T PF03137_consen 403 PIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPP 482 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCCh
Confidence 0000 00 00 01122222222222222222233334667788899
Q ss_pred CchhhHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 011956 401 NMKGSAGSLVTLVSW-LGSWIISFTFNFLMKW 431 (474)
Q Consensus 401 ~~~~~~~g~~~~~~~-~g~~i~~~i~g~~~~~ 431 (474)
++|+.+.|+...+.+ +|.+-+|.+.|.+.|.
T Consensus 483 ~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 483 EQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------
T ss_pred hhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 999999999987766 6778899999999983
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-17 Score=157.49 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=134.7
Q ss_pred cccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHH
Q 011956 61 AQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI---IVFSKAAWWLDLGRLL 136 (474)
Q Consensus 61 ~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l 136 (474)
.+|. +.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..+.... ...+++...++++|++
T Consensus 272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (490)
T PRK10642 272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLM 351 (490)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3444 44678998888888888999999999999999999999999998887654443332 2234567778889999
Q ss_pred HHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHHHHHHHhhccCC
Q 011956 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFIPE 211 (474)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~~~ 211 (474)
.|++.+........++.|.+|++.|++++++......++..++|.+.+++ +|+.++++..+.+++.++..+++||
T Consensus 352 ~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pe 431 (490)
T PRK10642 352 LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKE 431 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99887777777788889999999999999974444445556777776654 4787777777777776667777899
Q ss_pred ChhHHHhc-----CChhHHHHHHHHHhC
Q 011956 212 SPRWLAKT-----GKGIESEAALQRLRG 234 (474)
Q Consensus 212 ~p~~~~~~-----~~~~~~~~~~~~~~~ 234 (474)
+|+++.++ +|.+|+++.+++++.
T Consensus 432 s~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 432 TANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred ccCCCCCCccccccchhhHHHHhhcccc
Confidence 99987754 888899998888863
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=129.53 Aligned_cols=326 Identities=15% Similarity=0.067 Sum_probs=222.0
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccC-----chhHH-HHHHHHHHHHHHHHHHh-----h-------h
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-----RRGTM-GFSDIVCIIGWVIIVFS-----K-------A 126 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~l-~~~~~~~~~~~~~~~~~-----~-------~ 126 (474)
+..|+++...-.+.+.+...+... ..+.+|+.+|+.+ ||..+ ..|..+.+.+..+.+++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 567899999999999998877665 6999999999999 77655 55555555555555442 2 2
Q ss_pred H--H--HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHh--
Q 011956 127 A--W--WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIG-- 195 (474)
Q Consensus 127 ~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~-- 195 (474)
. + ...+.-.+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+.+.+ .-|..-.+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 2 2 2344567889999999999999999999999999999999999999999999888766 222222222
Q ss_pred HHHHHH-HHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHH
Q 011956 196 TIPCLV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLI 274 (474)
Q Consensus 196 ~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (474)
+++.++ .++..+-. |.++ ...+.+ .++++......++++..+|..++.+
T Consensus 165 a~i~~~l~~ia~wg~-E~r~-~~~~~~----------------------------~~~~~~~f~~a~~~~~~~~~a~~f~ 214 (403)
T PF03209_consen 165 ALIALLLNLIALWGQ-EPRR-SRRAAA----------------------------AERPRPPFREAWRQVWASPQARRFF 214 (403)
T ss_pred HHHHHHHHHHHHHhc-ccCC-cccccC----------------------------CCCCCccHHHHHHHHHhCCChhHHH
Confidence 222222 22222322 2211 000000 0001112234466677778777777
Q ss_pred HHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeehhhhHHHHHHHHHH
Q 011956 275 VGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMD-KSGRRPLLLVSAAGTCLGCLLAAL 353 (474)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~ 353 (474)
...++.....+.--..+-.|--++++....+...+....+.+.+++....+++.. |.++++....++...+++..++..
T Consensus 215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 7777777766655566666777777665555567888888888999888888766 667777777777777777766665
Q ss_pred HhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 354 SFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
.... .+.+.+....+..+...+.+.....+.+.+..++++.|..+|.....+.+...++..+.|.+.|
T Consensus 295 a~~~---------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 295 AGPL---------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHhc---------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 2233333333444444444444445788888888999999999999999999999999999998
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=152.15 Aligned_cols=384 Identities=16% Similarity=0.149 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 011956 38 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG 117 (474)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 117 (474)
-..+.+.++..+..++..+.+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|.++++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 33455566667777777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh--------------------h-----------------------------h--HH-HHHHHHHHHHhhhhhhh
Q 011956 118 WVIIVFS--------------------K-----------------------------A--AW-WLDLGRLLVGYGMGLLS 145 (474)
Q Consensus 118 ~~~~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~~~ 145 (474)
++++++- + + ++ .++++.++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 9998761 0 0 22 46778999999999999
Q ss_pred hhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----------------------hhhHHHHHhHHHHHHH
Q 011956 146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----------------------NWRILALIGTIPCLVQ 202 (474)
Q Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----------------------~wr~~f~~~~~~~~~~ 202 (474)
+...+|+-|...+++.+..+|+..+...+|.++|.++++++ .|+.-|++.+.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765 3777888888888888
Q ss_pred HHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHH
Q 011956 203 LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL 282 (474)
Q Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (474)
.+.++++|++.+...+ +.++++ .+....++. ..+......+.-++-+...+++++++.+....+...+-..
T Consensus 336 a~p~f~fPk~lp~~~~---~~~~~~-~~~~k~~~~-----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~ 406 (735)
T KOG3626|consen 336 AVPLFFFPKELPKSQK---RKRARD-LHVLKTESG-----GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESL 406 (735)
T ss_pred HHHHHhCcccCccccc---cchhhh-hcccccccc-----cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 8888888776321110 000000 000000000 0000000000112233456677777777666666666666
Q ss_pred HhhccchhhHhcHHHHHHHcCCcchhHH-HHHHHHHHHHHHHHHHHHhhcCC--cceeeehhhhHHHHHHH---HHHHhh
Q 011956 283 QQFGGVNGIAFYASSIFISAGFSGSIGM-IAMVVIQIPMTLLGVLLMDKSGR--RPLLLVSAAGTCLGCLL---AALSFL 356 (474)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~---~~~~~~ 356 (474)
...+....+|=|+...++.....+..+. .+...+..+|.+++|++.+|+.. |.......+...+..+. ..+...
T Consensus 407 ~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC 486 (735)
T KOG3626|consen 407 AITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGC 486 (735)
T ss_pred HHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecC
Confidence 5555555555555444433333333333 23333566778899999998753 33333333333333322 111100
Q ss_pred hcc----------------ccc-----------------------------------------c-------------c--
Q 011956 357 FQD----------------LQQ-----------------------------------------W-------------I-- 364 (474)
Q Consensus 357 ~~~----------------~~~-----------------------------------------~-------------~-- 364 (474)
... .+. . .
T Consensus 487 ~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~ 566 (735)
T KOG3626|consen 487 ESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTN 566 (735)
T ss_pred CCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccc
Confidence 000 000 0 0
Q ss_pred --------------c-cchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHH-HHHHHHHHHHHHH
Q 011956 365 --------------K-ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSW-LGSWIISFTFNFL 428 (474)
Q Consensus 365 --------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~i~g~~ 428 (474)
+ ......+++..++..+.........+.++.+.+|+++|..+.|+..++.+ +|.+-+|++.|++
T Consensus 567 ~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ 646 (735)
T KOG3626|consen 567 KNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAV 646 (735)
T ss_pred cCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhh
Confidence 0 01122333333333333333334445788888999999999999988766 7778899999999
Q ss_pred Hh
Q 011956 429 MK 430 (474)
Q Consensus 429 ~~ 430 (474)
.|
T Consensus 647 ID 648 (735)
T KOG3626|consen 647 ID 648 (735)
T ss_pred Hh
Confidence 98
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-13 Score=127.04 Aligned_cols=312 Identities=18% Similarity=0.199 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--hhhhhhhhhhhhhhcCCCCc
Q 011956 83 LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYG--MGLLSYVVPVYIAEITPKNL 160 (474)
Q Consensus 83 ~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~ 160 (474)
..+...+.++..|.++||+|||..+........+..++..+.. +| +++ +.|+. .+.......++++|....++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhH
Confidence 3678889999999999999999999999999888888777766 33 333 44443 34467788899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHH-hhccCCChhHHHhcCChhHHHHHHHHHhCC
Q 011956 161 RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGA 235 (474)
Q Consensus 161 r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (474)
|....++....+..+..++|.+++.+ |.-.+|++..+..++..+. ..++||+-..-.++ + .........
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~---~~~~~~~~~ 219 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS---D---ATLRELTPG 219 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc---c---ccccccCCC
Confidence 99999999999999999999998887 6667788877777775544 46688873211000 0 000000000
Q ss_pred CcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccch-hhHhcHHHHHHHcCCcchhHHHHHH
Q 011956 236 DADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN-GIAFYASSIFISAGFSGSIGMIAMV 314 (474)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (474)
.....+..+ ........-.++....+.+...+.......... ..++|+...++......+.......
T Consensus 220 ~~~~~~~~~------------~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~ 287 (463)
T KOG2816|consen 220 SLDSSHVAD------------AFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVS 287 (463)
T ss_pred cccchhhhh------------hhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHH
Confidence 000000000 000000010122233333333333333333333 4466666555444444445556666
Q ss_pred HHHHHHHHHHH-HHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q 011956 315 VIQIPMTLLGV-LLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVI 393 (474)
Q Consensus 315 ~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (474)
....++..+.. .+...++.|+.+..+.....+......+. +..|....... ...+.....|...+.
T Consensus 288 ~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----------~~~w~~~~~~v--~~~~~~~~~pa~~s~ 354 (463)
T KOG2816|consen 288 ILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-----------TETWMMFAAGV--VVALAGIVFPAIRAF 354 (463)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----------ccchhhhHHHH--HHHhhcchhHHHHhH
Confidence 66666665554 77788898887777887777777777774 23333222222 233344556777788
Q ss_pred hcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 394 MSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 394 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
.+...+++++|.+.++...+..+.+.++|.+.+.+..
T Consensus 355 ~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 355 ASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999998865
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=119.27 Aligned_cols=132 Identities=24% Similarity=0.349 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC
Q 011956 80 GSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKN 159 (474)
Q Consensus 80 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 159 (474)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh-hccCC
Q 011956 160 LRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPE 211 (474)
Q Consensus 160 ~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~-~~~~~ 211 (474)
+|++.+++.+....+|..+++.+++.+ +|++.+++.+...++..+.. ++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999988877 89999998887777655444 34444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-14 Score=131.61 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=123.9
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL 143 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 143 (474)
.+++++|.++.+.+++.+...++..++.+++|+++||+|||+.+..+.....+........++.+.+++.+++.+++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35678999999999998888888889999999999999999988877766666555555677888888899999988887
Q ss_pred hhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCC
Q 011956 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE 211 (474)
Q Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~ 211 (474)
..+....+..|.+|+ +|++++++++....+|..+++.+++.+ +|+..|++.+++.++.++..+++||
T Consensus 322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777778888999875 599999999988999999999998876 8999999888888887777777665
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.6e-14 Score=131.61 Aligned_cols=349 Identities=17% Similarity=0.140 Sum_probs=194.9
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc---C--chhHHHHHHHHHHHHHHHHHHhh----hHHHH
Q 011956 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI---G--RRGTMGFSDIVCIIGWVIIVFSK----AAWWL 130 (474)
Q Consensus 60 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~~~----~~~~l 130 (474)
+..|.+.+++|+++++.....+...+...+ -++.|.++|-+ | ||+-++++.++.+++.+..+..+ +....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 345668999999999999999999888877 67789999976 2 55666777777766666565533 46666
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcCCC--CcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHH
Q 011956 131 DLGRLLVGYGMGLLSYVVPVYIAEITPK--NLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~ 204 (474)
.+.-++..+|.+....++-+++.|...+ ++|+...+.......+|.+++..+++.+ ++|+.|.+.+++..+..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 6777888899999999999999998843 3367888888888889999998888777 788889888777666554
Q ss_pred Hhhc-cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHH-HHHHHHH
Q 011956 205 GLCF-IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV-GVGLMVL 282 (474)
Q Consensus 205 ~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 282 (474)
..++ .+|.++ .+.++.... .+ + +.. ......++.....++.++.+..+...+ ..++...
T Consensus 170 ~~~~~~~e~~~-----~~~~~~~~~----~~---~---~~~----~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 230 (433)
T PF03092_consen 170 VALFLLEERKV-----RPADEVFSF----GK---E---EVP----CLFGSFREQLSELWRALQQRAIWQPILFFIFFFNL 230 (433)
T ss_pred HHHHhhhhccc-----cccchhhcc----cc---c---ccc----hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4444 444211 000000000 00 0 000 000001112223455555666555544 2332222
Q ss_pred HhhccchhhHhcHHHHHHHcCCcchhHH---HHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcc
Q 011956 283 QQFGGVNGIAFYASSIFISAGFSGSIGM---IAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQD 359 (474)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (474)
..........++.....+..+++..... .+..++.++|..+......+..-|+++....++.++..+.-.......+
T Consensus 231 ~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n 310 (433)
T PF03092_consen 231 PPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWN 310 (433)
T ss_pred ccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEe
Confidence 2211111011222222222224443333 3333344444444444433444444443333222222111111000000
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 360 LQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
. ...-...+..+.--.+........+.|. ...++|+.|+...|+.+++..++.++|..++..+...+.+
T Consensus 311 ~-~~Gi~d~~f~lgd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 311 L-DLGIPDQWFALGDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred e-eeCcCCeEEEEEhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000001111111222222222333344 3788999999999999999999999999999999988877
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=137.85 Aligned_cols=146 Identities=13% Similarity=0.081 Sum_probs=124.5
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhh
Q 011956 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYV 147 (474)
Q Consensus 68 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 147 (474)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+..+.+++.++.++++|.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999999999999999999999999999899999999999999999999999888888
Q ss_pred hhhhhhhcCCCCcchhHHHH-HHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHH-hhccCCCh
Q 011956 148 VPVYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG-LCFIPESP 213 (474)
Q Consensus 148 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~-~~~~~~~p 213 (474)
...++.|.+|++.|+...+. ++....+|.++++++.+++ |||..|.+.++..++..+. ...+++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88999999999988877655 6677889999999888877 8999999888777664443 34455544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=137.68 Aligned_cols=138 Identities=15% Similarity=0.075 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 011956 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEI 155 (474)
Q Consensus 76 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (474)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677899999999999999999999999999999999999999998888888899999998888899999999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHHHhhccCCCh
Q 011956 156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIPESP 213 (474)
Q Consensus 156 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~~~~~p 213 (474)
+|.++|++++|+......+|.+++|++++.+ +...+|++.++..+++.++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999998866 445678888777777777777778874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-12 Score=115.39 Aligned_cols=237 Identities=13% Similarity=0.009 Sum_probs=152.8
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 011956 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG 138 (474)
Q Consensus 59 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (474)
+|..-.+-+++|.+..|++.+....+....+..++.|.++||+|||+.-+..+++.+++++ +-..+|++.++++|++.|
T Consensus 54 GpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 54 GPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred cchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHH
Confidence 3443345578999999999999999999999999999999999999999999999999885 556789999999999999
Q ss_pred hhhhhhhhhhhhhhh-hc----CCCCcchhHHHHHH-HHHHHHHHHHHHHhccc------hhhHHHHHhHHHHHHHHHHh
Q 011956 139 YGMGLLSYVVPVYIA-EI----TPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGL 206 (474)
Q Consensus 139 ~~~~~~~~~~~~~i~-~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l------~wr~~f~~~~~~~~~~~~~~ 206 (474)
++.+..+.+-.++.. |. +|++..+..++... ...++-.+++.+++..+ |-..+|....+..+++.+..
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 999999888877663 33 23333344444333 23344445555555544 33678888777777655544
Q ss_pred -hccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhh
Q 011956 207 -CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (474)
Q Consensus 207 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (474)
...+|++.... +..+ . .+.-+..++.+.++++.. .......+.+.
T Consensus 213 ~~~W~ENyg~~~---~~~~-----------------~-----------~~~~~~a~~~i~~d~ril---~LG~~qslFE~ 258 (354)
T PF05631_consen 213 LKTWPENYGDTS---SSSS-----------------L-----------SGSFREAWRAILSDPRIL---LLGLIQSLFEG 258 (354)
T ss_pred HhcccccCCCcc---cccc-----------------h-----------HHHHHHHHHHHHcCchhH---HHHHHHHHHHH
Confidence 33466532000 0000 0 000111233344444433 33344444444
Q ss_pred ccchhhHhcHHHHHHH-cCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 011956 286 GGVNGIAFYASSIFIS-AGFSGSIGMIAMVVIQIPMTLLGVLLMDK 330 (474)
Q Consensus 286 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 330 (474)
..+.....|.|.+-.. ....-++++..+.+..++|+.+..++..+
T Consensus 259 smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 259 SMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555566654422 23445688888889999998888665543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=130.49 Aligned_cols=142 Identities=19% Similarity=0.118 Sum_probs=122.5
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHh
Q 011956 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA--WWLDLGRLLVGY 139 (474)
Q Consensus 62 ~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~ 139 (474)
.+.+.++++.++.+.+++.+.+.++..+++++.|++.||+|||+.+.++..+.+++.++..+.++. ..++...++.|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (377)
T TIGR00890 228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFF 307 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Confidence 344567889999999999999999999999999999999999999999999998888887776643 334566788899
Q ss_pred hhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHH
Q 011956 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL 203 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~ 203 (474)
+.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.|++.++..++++
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 88888888888999999999999999999999999999999988776 89999988877766543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=130.84 Aligned_cols=140 Identities=13% Similarity=0.210 Sum_probs=119.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHhhhhhhhhhh
Q 011956 73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK----AAWWLDLGRLLVGYGMGLLSYVV 148 (474)
Q Consensus 73 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~ 148 (474)
.++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36779999999999999999999999999999999999999988877766632 34667788999999999888999
Q ss_pred hhhhhhcCCCCcchhHHHHHH-HHHHHHHHHHHHHhccc----------hhhHHHHHhHHHHHHHHH-HhhccCCC
Q 011956 149 PVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQLI-GLCFIPES 212 (474)
Q Consensus 149 ~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l----------~wr~~f~~~~~~~~~~~~-~~~~~~~~ 212 (474)
..++.|++|+++|++++++.+ ...++|.++||++++.+ ||+..|++.++..+++.+ ..++++|+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999997 67889999999998865 389999988877766444 44556766
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-13 Score=125.35 Aligned_cols=146 Identities=18% Similarity=0.248 Sum_probs=124.6
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (474)
+.+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+......+.++.+.+++.+++.|++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999988888888889999999999999999998888777666666667788888888999999999988
Q ss_pred hhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCC
Q 011956 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE 211 (474)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~ 211 (474)
.+....++.|..|+ ++++++++++....+|..++|.+++.+ ||+..|++.++..++..+...+++|
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 88888999999876 467999999999999999999998876 8999999988888777766665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=131.18 Aligned_cols=151 Identities=14% Similarity=0.075 Sum_probs=127.2
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 011956 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGM 141 (474)
Q Consensus 62 ~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 141 (474)
.|.+.++.|.+..+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.
T Consensus 243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 322 (406)
T PRK11551 243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFV 322 (406)
T ss_pred HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999999999999999999998887777777777777788888888888899988
Q ss_pred hhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHHHHHHHhhccCCC
Q 011956 142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFIPES 212 (474)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~~~~~ 212 (474)
+...+...+++.|.+|+++|+++.++.+....+|..++|.+++.+ +|+..+++.....++..+..+++.++
T Consensus 323 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
T PRK11551 323 VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVSR 398 (406)
T ss_pred HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888999999999999999999999999999999999999887 45666666666655555554444433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-13 Score=127.19 Aligned_cols=147 Identities=15% Similarity=0.255 Sum_probs=124.4
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (474)
+.++.|. ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.+|.+.+++.+++.|++.+..
T Consensus 242 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 319 (399)
T PRK05122 242 YYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLV 319 (399)
T ss_pred HHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHH
Confidence 3344555 34567778889999999999999999999999999999988888888888888888888999999999988
Q ss_pred hhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCCCh
Q 011956 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPESP 213 (474)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~~p 213 (474)
.+.....+.|.+|+++|+++.++++....+|..+++++.+.+ ||++.|++.+...++.++..+++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 320 FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888999999999999999999999998888887766 899999998888777666665555543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-13 Score=124.75 Aligned_cols=153 Identities=22% Similarity=0.369 Sum_probs=137.1
Q ss_pred cccccccccccc-cCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 011956 57 YSSPAQSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG-TMGFSDIVCIIGWVIIVFSKAAWWLDLGR 134 (474)
Q Consensus 57 ~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 134 (474)
......|.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++.+.+.+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 272 (352)
T cd06174 193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVAL 272 (352)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 334445555555 4899999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhcc
Q 011956 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (474)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 209 (474)
++.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+ +|++.+++.+++.++..+..+++
T Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999999999999999998876 89999999998888876665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=124.07 Aligned_cols=141 Identities=17% Similarity=0.200 Sum_probs=121.8
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (474)
..++.+.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++++++.|++.+..
T Consensus 242 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 319 (392)
T PRK12382 242 YFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI 319 (392)
T ss_pred HHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence 34455554 3566677788888999999999999999999999999999998888888888888888999999999988
Q ss_pred hhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhh
Q 011956 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC 207 (474)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 207 (474)
.+...+.+.|.+|+++|+++.++++....+|..++|.+.+.+ ||++.|++.+...++..+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999999998877 899999998887777555544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=122.99 Aligned_cols=144 Identities=17% Similarity=0.118 Sum_probs=125.6
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYG 140 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 140 (474)
..|...+|+|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.+..++..++.++++|.+.+++.+++.|+.
T Consensus 227 ~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 227 FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 33445567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhcCCCCcchhHHHHHH-HHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh
Q 011956 141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL 206 (474)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 206 (474)
.+...+....++.+. |+++|++..++++ ...++|.++++.+++.+ |+ ..|++.+.+.++..+..
T Consensus 307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 999999999999998 8989999999986 56789999999999887 54 45666666666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-13 Score=128.38 Aligned_cols=144 Identities=11% Similarity=0.081 Sum_probs=120.2
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTMG--FSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (474)
.+|.+.+++|.+..+.+++.++..++..+++++.|+++||. ++|+... .+.++.+++.+++...++++.+++.+++
T Consensus 263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~ 342 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIF 342 (455)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 44556677899999999999999999999999999999984 3443333 3344445555666778899999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHHHHHH
Q 011956 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~~~~~ 204 (474)
.|++.+...+...+++.|.+|++++++.+++++....+|.++||.+++.+ +|++.|++.++..++..+
T Consensus 343 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 343 FGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877 599999998877665444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-11 Score=109.61 Aligned_cols=338 Identities=13% Similarity=0.114 Sum_probs=199.2
Q ss_pred cccccc-cCCChhhHH-HHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 011956 63 SGITND-LGLSVAEYS-LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYG 140 (474)
Q Consensus 63 ~~i~~~-~~~s~~~~g-~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 140 (474)
|.+.+. .|++.+|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..++-|++
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~ 107 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA 107 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 344454 788888864 566777777888999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc------hhhHHHHHhHHHHHHHHHHhhccCCChh
Q 011956 141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPESPR 214 (474)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~~~~p~ 214 (474)
.+. ..+-++++-...|+++-.++.+...++.-+|..++.++|..+ +.+...++......++++..+++|..++
T Consensus 108 ~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 108 TAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 875 677788888888888889999999888888888888888766 5566666666666666677777887665
Q ss_pred HHHhcCChhHHHHHHHHHhCCCcchHHHHH-HH-------HHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhc
Q 011956 215 WLAKTGKGIESEAALQRLRGADADISEEAA-EI-------REYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (474)
...-+++..+... .++...++.+..++.. .. +......-+.-...+++..+++......+ .+....+
T Consensus 187 S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSl----WWa~atc 261 (412)
T PF01770_consen 187 SLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSL----WWAFATC 261 (412)
T ss_pred ccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHH----HHHHHHh
Confidence 3322221111000 0000000000000000 00 00000000111122333444444333333 3333333
Q ss_pred cchhhHhcHHHHHHHcCC------cchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhH--HHHHHHHHHHhhhc
Q 011956 287 GVNGIAFYASSIFISAGF------SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGT--CLGCLLAALSFLFQ 358 (474)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 358 (474)
++..+..|.+.+.+.... -.+..-....+.+.++.+..|++..++.+..-+..+.... +..++++...
T Consensus 262 gy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t---- 337 (412)
T PF01770_consen 262 GYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT---- 337 (412)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 456667777777665511 1235555666667777788888755554433333222222 2222222221
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHH
Q 011956 359 DLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS 418 (474)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 418 (474)
.+.+.......++...+. ...++....++.....+.-|...|+.++...+-.
T Consensus 338 -------~~Iwv~Y~~yIif~~~y~-fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 338 -------GNIWVCYAGYIIFRSLYM-FLITIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred -------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 233333333344444433 3344444555555556777777777766654443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=120.25 Aligned_cols=151 Identities=11% Similarity=0.055 Sum_probs=124.7
Q ss_pred cccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 011956 61 AQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (474)
Q Consensus 61 ~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (474)
..|. +++++|.+..+.+++.+.+.++..++.+..|+++||++||+.+..+..+..+...+....+|.+.+.+..++.|+
T Consensus 227 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 306 (394)
T PRK03699 227 WVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGF 306 (394)
T ss_pred HHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3443 446789999999999999999999999999999999999999988888777777777777788777778889999
Q ss_pred hhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCCC
Q 011956 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPES 212 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~~ 212 (474)
+.+..++...++..+..| +++++..+.......+|..++|.+.+.+ ||+..+++.++..+++.+....+++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T PRK03699 307 FSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFV 382 (394)
T ss_pred HHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888888888888888775 4467888888888899999999998877 89999998888777766655555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=122.91 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHH
Q 011956 270 AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCL 349 (474)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 349 (474)
.+...+..++...........++.|+.+.++.+..+.++......+..+++.+..|+++||+|||+.+..+.....++.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 33444444444444333333344444332222223344677777788889999999999999999988887777766666
Q ss_pred HHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 350 LAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
.+.+. ++...........+.......+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.
T Consensus 89 ~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 89 AIPLV------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55542 222222222223333333445666788899999999999999999999999999999999988
Q ss_pred hhhccchhHHHHHHHHHHHHhhheeCcC
Q 011956 430 KWSSTGTFFAFSAICSLTVLFVAKLVPE 457 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
+.++...+...+.+..+..+...+..++
T Consensus 157 ~~g~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 157 MQSINLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 7555555655554444443333333433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=125.01 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 011956 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEI 155 (474)
Q Consensus 76 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (474)
.+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 56677778888899999999999999999999999988888888878888888899999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 156 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
.|+++|++.+++.+....+|..+||.+++.+ ||++.|++.+++.++..+..++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877 8999999988887776555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-12 Score=118.67 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=119.8
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 011956 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGM 141 (474)
Q Consensus 62 ~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 141 (474)
+|.+.++.|.+.++.++..+...++..+++++.|++.||+|+|+++..+..+..++..... + .......+++.|++.
T Consensus 223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~ 299 (381)
T PRK03633 223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAG 299 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHH
Confidence 4556667899999999999999999999999999999999999999888888777665443 2 234445778888888
Q ss_pred hhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhcc
Q 011956 142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (474)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 209 (474)
....|...+.+.|..|+++++...+..+...++|..+||.+++.+ +|++.|.+.+...++..+..+..
T Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 888899999999999988888888888888999999999999887 89999998887777665555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=117.83 Aligned_cols=144 Identities=13% Similarity=0.211 Sum_probs=115.9
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHhhh
Q 011956 63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV-IIVFSKAAWWLDLGRLLVGYGM 141 (474)
Q Consensus 63 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~ 141 (474)
|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+... +..+..++.. +....++.+.++++.++.|++.
T Consensus 230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~ 308 (390)
T PRK03545 230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI 308 (390)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999999999999887544 4444444433 3455678888888999999998
Q ss_pred hhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
+...+...+.+.+..| ++|++++++++....+|..+||.+++.+ |++..|++.+.+.++.++....
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 8777777888888876 5789999999988888888888888776 8999999988888776555433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=106.02 Aligned_cols=318 Identities=15% Similarity=0.131 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC
Q 011956 80 GSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKN 159 (474)
Q Consensus 80 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 159 (474)
.++-...+.+++++.+.+.|+.|.|+.++++...+....+..-+ +|-+-++.+..+.|+|.+..+...-.++++..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67777888999999999999999999999999999887776655 45666888999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccc------------hhh-HH----------HHHhHHH---HHHHHHHhhccCCCh
Q 011956 160 LRGGFTTVHQLMICIGVSMTYLIGAFL------------NWR-IL----------ALIGTIP---CLVQLIGLCFIPESP 213 (474)
Q Consensus 160 ~r~~~~~~~~~~~~~g~~~~~~l~~~l------------~wr-~~----------f~~~~~~---~~~~~~~~~~~~~~p 213 (474)
++.+..++.......+.++|..+-..+ +-+ .. ..+.+++ .++.++...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999999999999988887665443 111 11 1111111 111122222333221
Q ss_pred hHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHh
Q 011956 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAF 293 (474)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (474)
. ...++. . +....+......++++++....+....+...+.........|.
T Consensus 215 ~-~~~~~~---------------------------~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt 265 (461)
T KOG3098|consen 215 V-VNCKSS---------------------------S-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPT 265 (461)
T ss_pred h-hhhhhh---------------------------c-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccch
Confidence 0 000000 0 0000001111223334444444444333333322222222222
Q ss_pred cHHHHHHHcCCcch----hHHHHHHHHHHHHHHHHHHHHhh---cCCcceeeehhhhHHHHHHHHHHHhhhcc-ccc---
Q 011956 294 YASSIFISAGFSGS----IGMIAMVVIQIPMTLLGVLLMDK---SGRRPLLLVSAAGTCLGCLLAALSFLFQD-LQQ--- 362 (474)
Q Consensus 294 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 362 (474)
...... ..+.+.. ......+++.++++...+.+.+| +|+++.+.++..+..+++++......... ..+
T Consensus 266 ~i~ft~-~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~ 344 (461)
T KOG3098|consen 266 CISFTR-KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDS 344 (461)
T ss_pred hhhhhh-hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcc
Confidence 222211 1222222 44455556677777767777655 57788887777776666666554433211 000
Q ss_pred --ccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 363 --WIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 363 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
............+....+..-.+.....+.++.+.+| +.|..+.++...-..++..++-+..+...
T Consensus 345 ~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~~ 412 (461)
T KOG3098|consen 345 PPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYLL 412 (461)
T ss_pred cccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 0001223444555556666666677777888899885 88999999998888888877666655433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=117.62 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=128.9
Q ss_pred cccccccc-cCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 011956 61 AQSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (474)
Q Consensus 61 ~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (474)
..|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++.|+
T Consensus 245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (417)
T PRK10489 245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGY 324 (417)
T ss_pred hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 34545555 89999999999999999999999999999999888888888888888888888888888888888999999
Q ss_pred hhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHH-HHHHhhccCCCh
Q 011956 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV-QLIGLCFIPESP 213 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~-~~~~~~~~~~~p 213 (474)
+.+...+...+++.|..|+++|+++++++.....+|..+|+.+.+.+ |++..+++.+...++ +.+....++|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 98887788889999999999999999999999999999999998877 677777776655544 455556666654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=122.08 Aligned_cols=140 Identities=20% Similarity=0.168 Sum_probs=110.2
Q ss_pred ccccc-ccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH--HHHHH--hhhHHHHHHHHH
Q 011956 61 AQSGI-TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW--VIIVF--SKAAWWLDLGRL 135 (474)
Q Consensus 61 ~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~ 135 (474)
..|.+ ++++|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+++..+
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (394)
T TIGR00883 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVL 320 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34434 47789999999999999999999999999999999999998876555444433 22222 246777778889
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHH-HHHHHHHHHHHHHHHhccc----h-hhHHHHHhHHHHH
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCL 200 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l----~-wr~~f~~~~~~~~ 200 (474)
+.|++.+...+...+++.|.+|+++|++++++ .+.+..+|..++|.+++.+ | |++.++......+
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 321 GLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 99999988999999999999999999999987 4566678888888888776 5 8877766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=118.78 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=112.9
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH---h-hhHHHHHHHHHHHHh
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF---S-KAAWWLDLGRLLVGY 139 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~ 139 (474)
.+.+++|.+..+...+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 356778888877666666677778889999999999999999998887766555443322 2 234444556677788
Q ss_pred hhhhhhhhhhhhhhhcCCCCcchhHHHHHH-HHHHHHHHHHHHHhccc------hhhHHHHHhHHHHHHHHHHhhccCCC
Q 011956 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPES 212 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~~~~ 212 (474)
+.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+.+ +|+..+.+.++..++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888888888999999999999988888854 44558888888888776 48888888777777776666666765
Q ss_pred h
Q 011956 213 P 213 (474)
Q Consensus 213 p 213 (474)
.
T Consensus 436 ~ 436 (438)
T PRK09952 436 Q 436 (438)
T ss_pred c
Confidence 3
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-11 Score=113.62 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=117.3
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHh
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGY 139 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~ 139 (474)
..|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ .-++.|+
T Consensus 227 ~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~ 304 (393)
T PRK09705 227 WLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGL 304 (393)
T ss_pred HHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHH
Confidence 34445566899999999999999999999999999999999999999988888777766554333 22222 2346688
Q ss_pred hhhhhhhhhhhhhhhcCC-CCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHHHHHHH-hhccCCC
Q 011956 140 GMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIG-LCFIPES 212 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~~~~~~-~~~~~~~ 212 (474)
+.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|+..|++.++..++..+. ..+.||+
T Consensus 305 g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 305 GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888877777777775 56789999999999999999999998887 4778888877776664444 4556776
Q ss_pred h
Q 011956 213 P 213 (474)
Q Consensus 213 p 213 (474)
+
T Consensus 385 ~ 385 (393)
T PRK09705 385 F 385 (393)
T ss_pred c
Confidence 4
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=119.08 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=109.8
Q ss_pred ccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHH
Q 011956 61 AQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI--IVFSKAAWWLDLGRLLV 137 (474)
Q Consensus 61 ~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~ 137 (474)
..| .+++++|.+..+.++..+.+.++..++.+++|+++||+|||+.+..+..+..++..+ ....++.+.+.+.+++.
T Consensus 280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (467)
T PRK09556 280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL 359 (467)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344 456789999999999999999999999999999999999998876655444443322 23345666777888888
Q ss_pred HhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHH-HHHHHHHHhccc----------------hhhHHHHHhHHHHH
Q 011956 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----------------NWRILALIGTIPCL 200 (474)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l----------------~wr~~f~~~~~~~~ 200 (474)
|++...........+.|.+|+++|+++.|+.+....+ |..++|.+.+.+ +|+..|++..+..+
T Consensus 360 G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~ 439 (467)
T PRK09556 360 GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAI 439 (467)
T ss_pred HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHH
Confidence 8654333333345677999999999999999888886 667776665444 49999988877777
Q ss_pred HHHHHhhc
Q 011956 201 VQLIGLCF 208 (474)
Q Consensus 201 ~~~~~~~~ 208 (474)
++.+..++
T Consensus 440 ~~~~~~~~ 447 (467)
T PRK09556 440 GCICLMAI 447 (467)
T ss_pred HHHHHHHH
Confidence 66555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=117.83 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=105.2
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchh--HHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG--TMG------FSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~--~l~------~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (474)
+.+++|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+.++.++........++.+..+....+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (399)
T TIGR00893 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVAL 321 (399)
T ss_pred HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999996 111 1111111111111222344444444445
Q ss_pred HHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----h-hhHHHHHhHHHHHHHHHHh
Q 011956 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQLIGL 206 (474)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~-wr~~f~~~~~~~~~~~~~~ 206 (474)
.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+ + |+..|++.++..++..+..
T Consensus 322 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 322 GFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 455544 7889999999999999999999999999999999999998877 6 9999988887776655444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=116.23 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=110.7
Q ss_pred hhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccccccc
Q 011956 290 GIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKA 366 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (474)
....+.+.+.++.+.+.. .......++..++.+..|++.||+|||+.+..+.++..++.++....
T Consensus 41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 108 (434)
T PRK11663 41 SFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS------------ 108 (434)
T ss_pred hHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH------------
Confidence 445556666666666543 66777788899999999999999999999988888877777766552
Q ss_pred chHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHH
Q 011956 367 TPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICS 445 (474)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~ 445 (474)
.+...+....++.+.......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+++..
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~ 188 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAI 188 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3333333333334444444456667899999999999999999999999999999999999988 444445555555444
Q ss_pred HHHHhhheeCcC
Q 011956 446 LTVLFVAKLVPE 457 (474)
Q Consensus 446 ~~~~~~~~~~~~ 457 (474)
+..+...+..+|
T Consensus 189 ~~~~~~~~~~~~ 200 (434)
T PRK11663 189 VVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHcCC
Confidence 444443344444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=116.17 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=114.1
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHH-HHHHHHHHHHHHHHH-----hhhHHHHHHHH
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMG-FSDIVCIIGWVIIVF-----SKAAWWLDLGR 134 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~l~~~r 134 (474)
..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++.+.+++..
T Consensus 244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (402)
T TIGR00897 244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIA 323 (402)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 455566789999999999999999999999999999999999988764 333334444333332 24567777888
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhcc
Q 011956 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (474)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~ 209 (474)
++.|++.+...+. ...+.|..| ++|+++.|+.+....+|..++|.+++.+ ||+..|++.++..++..+...++
T Consensus 324 ~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 324 IALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 8999988876554 456677654 5799999999999999999999998877 89999999888877766555544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=119.07 Aligned_cols=155 Identities=15% Similarity=0.043 Sum_probs=119.5
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh-----h------hH
Q 011956 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-----K------AA 127 (474)
Q Consensus 59 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~------~~ 127 (474)
....|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++. + +.
T Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGN 383 (481)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Confidence 344566778889999889999999999999999999999999999999999988888877776621 1 22
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHH
Q 011956 128 WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL 203 (474)
Q Consensus 128 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~ 203 (474)
..+....++.+.......+....++.|.+|+++|++++++.+....+|.+++|.+.+.+ +|++.|++.++++++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 463 (481)
T TIGR00879 384 VAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGL 463 (481)
T ss_pred HHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHH
Confidence 23333333333322334466677889999999999999999999999999999888766 79999998888877765
Q ss_pred HHh-hccCCCh
Q 011956 204 IGL-CFIPESP 213 (474)
Q Consensus 204 ~~~-~~~~~~p 213 (474)
+.. ++.||++
T Consensus 464 i~~~~~~~~~~ 474 (481)
T TIGR00879 464 IFVYFFLPETK 474 (481)
T ss_pred HHHheecccCC
Confidence 554 4456653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=114.86 Aligned_cols=176 Identities=10% Similarity=0.038 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHH
Q 011956 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCL 349 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 349 (474)
..+..++.+...+.-...+....+.+.++.+.+. ++......++..++.+..|++.||+|||+.+..+.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3333333433333333444444454445544444 3677777888899999999999999999999888888777777
Q ss_pred HHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 350 LAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
...+. ++...+...-++.+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.
T Consensus 89 ~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 89 ATMFA------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHh------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76653 334444444555565555666777788999999999999999999999999999999999887
Q ss_pred h-------hhccchhHHHHHHHHHHHHhhheeCcCCCC
Q 011956 430 K-------WSSTGTFFAFSAICSLTVLFVAKLVPETKG 460 (474)
Q Consensus 430 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (474)
+ .++...+.+.+...++..++.++++||+++
T Consensus 157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 157 ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4 244455555555555555556666776553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-11 Score=114.50 Aligned_cols=175 Identities=16% Similarity=0.131 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHH
Q 011956 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGC 348 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 348 (474)
+......+................+.+.++.+.+. +.......++..++.++.|+++||+|||+.+..+..+.+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33333444444333344445555555555555543 367777888999999999999999999999888877777776
Q ss_pred HHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 349 LLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 428 (474)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~ 428 (474)
+...+. .+...+....++.+.......+...+++.|..|+++|+.+.++.+....+|..+++.+.+.+
T Consensus 92 ~~~~~~------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l 159 (405)
T TIGR00891 92 LACGFA------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLV 159 (405)
T ss_pred HHHHHh------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666552 33444444445555555556677778999999999999999999999999999999999988
Q ss_pred Hhhhc--cchhHHHHHHHHHHHHhhheeCcCC
Q 011956 429 MKWSS--TGTFFAFSAICSLTVLFVAKLVPET 458 (474)
Q Consensus 429 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
.+..+ +...+...++..+..++.....||+
T Consensus 160 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 160 VPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 87322 3333334444444444444445554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-11 Score=112.44 Aligned_cols=141 Identities=15% Similarity=0.141 Sum_probs=117.2
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 011956 63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMG 142 (474)
Q Consensus 63 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 142 (474)
|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+
T Consensus 229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 308 (382)
T PRK11128 229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT 308 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33446789999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred hhhhhhhhhhhhcCCCCcchhHHHHHH-HHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHH
Q 011956 143 LLSYVVPVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG 205 (474)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~ 205 (474)
...+....++.+. +++++++..+..+ ....+|..+||.+++.+ |+ ..|+..+++.++.++.
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9899999998887 5666788888876 55677778888888877 55 4566566555554433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-11 Score=115.45 Aligned_cols=153 Identities=17% Similarity=0.086 Sum_probs=114.2
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh--hH-H-HHHHHHHH
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AA-W-WLDLGRLL 136 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r~l 136 (474)
..|.+.+++|.+..+..+......+...++.++.|+++||+|||++++.+.++.+++.++.+... +. + ....+-++
T Consensus 293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 372 (479)
T PRK10077 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 372 (479)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 45667788898887778888888889999999999999999999999999999998887775432 21 1 22233444
Q ss_pred HHhhhhh-hhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhc----------cchhhHHHHHhHHHHHHHHHH
Q 011956 137 VGYGMGL-LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA----------FLNWRILALIGTIPCLVQLIG 205 (474)
Q Consensus 137 ~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~----------~l~wr~~f~~~~~~~~~~~~~ 205 (474)
.+.+.+. ..+....+++|.+|+++|++++++......+|.++++.+.. ..+|++.|++.++.+++..+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (479)
T PRK10077 373 YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 452 (479)
T ss_pred HHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHH
Confidence 4444443 23677899999999999999999999988888887743332 237888898888777665554
Q ss_pred h-hccCCCh
Q 011956 206 L-CFIPESP 213 (474)
Q Consensus 206 ~-~~~~~~p 213 (474)
. ++.||+.
T Consensus 453 ~~~~~~e~~ 461 (479)
T PRK10077 453 MWKFVPETK 461 (479)
T ss_pred HHhccccCC
Confidence 4 4567663
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=115.60 Aligned_cols=174 Identities=17% Similarity=0.113 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHH
Q 011956 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLA 351 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 351 (474)
..+...++.....+.....++.|.....+......+.......+...+..++.|+++||++||+.+..+.....++.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~ 93 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM 93 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 33444444444443333334444333222222233456666667777778999999999999999998888888877776
Q ss_pred HHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 352 ALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
... ++.+.+....++.+.......+...+.+.|..|+++|+++.|+.+...++|..++|.+.+.+.+.
T Consensus 94 ~~~------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~ 161 (400)
T PRK11646 94 AIA------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY 161 (400)
T ss_pred HHh------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 552 23333334444444444445566678889999999999999999999999999999999999876
Q ss_pred hccchhHHHHHHHHHHHHhhheeCcC
Q 011956 432 SSTGTFFAFSAICSLTVLFVAKLVPE 457 (474)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
++...+++.+..+.+..++..+..++
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 55555555555544444443444444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-12 Score=122.66 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=109.3
Q ss_pred ccccccc-cccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Q 011956 60 PAQSGIT-NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--KAAWWLDLGRLL 136 (474)
Q Consensus 60 ~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l 136 (474)
..+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..+..+..... .+.+.+.+..++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3455455 6899999999999999999999999999999999999999988877766665544333 344445455555
Q ss_pred HHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHH
Q 011956 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (474)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~ 199 (474)
.+.......+...+++.|.+|+++|++++++......+|..++|.+++.+ ||+..+...+...
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 55444445567778899999999999999999999999999999988876 7888776554433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=114.88 Aligned_cols=159 Identities=22% Similarity=0.193 Sum_probs=113.5
Q ss_pred chhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccccc
Q 011956 288 VNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWI 364 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (474)
......+.+.+.+..+.+.. .......++.+++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 102 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA---------- 102 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc----------
Confidence 34445556666655555443 56667778889999999999999999999888877777766665542
Q ss_pred ccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHH
Q 011956 365 KATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAI 443 (474)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~ 443 (474)
.+...+....++.+.......+...+++.|..|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+.+
T Consensus 103 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~ 180 (398)
T TIGR00895 103 --TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIA 180 (398)
T ss_pred --cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhH
Confidence 3333444444455555555667778999999999999999999999999999999999999988 4444455555445
Q ss_pred HHHHHHhhheeCcCC
Q 011956 444 CSLTVLFVAKLVPET 458 (474)
Q Consensus 444 ~~~~~~~~~~~~~~~ 458 (474)
..+..++.....+++
T Consensus 181 ~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 181 PLLLLLLLMRFLPES 195 (398)
T ss_pred HHHHHHHHHHhCCCC
Confidence 555444445555554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=107.44 Aligned_cols=181 Identities=12% Similarity=0.090 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhH
Q 011956 268 KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGT 344 (474)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 344 (474)
+.++..++..++.+...+..--.+..-.|.+.++.+.+-+ .+.+.+.+..-++.++.|.++||.+.|+.+..++++.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 3344555555555555444444555556666666655544 7777888888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011956 345 CLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFT 424 (474)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 424 (474)
++..+++++ .++...+.++..+.+.+.+.-.|.+...+..-+|+++||+..++.|+..++|+.+.|++
T Consensus 105 ai~nil~Gf------------s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 105 AIVNILFGF------------SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred HHHHHHHhh------------hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence 999999998 35666666777777777777778888899999999999999999999999999999999
Q ss_pred H--HHHHhh-hccchhHHHHHHHHHHHHhhheeCcCCCC
Q 011956 425 F--NFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPETKG 460 (474)
Q Consensus 425 ~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (474)
. +.+.++ ++...+++-+++.++.+++.++..|++.+
T Consensus 173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9 888874 55566777777777778887777766543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.6e-11 Score=107.45 Aligned_cols=173 Identities=23% Similarity=0.135 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHH
Q 011956 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGC 348 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 348 (474)
...+...+..+..........-.++.+-++.+.+.. ...+.++.+..++.++...+.||+.||+++.....++.++.
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n 92 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN 92 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 334444444444444455566677777777776654 88899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 349 LLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 428 (474)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~ 428 (474)
++..+ .+++..+...=+..+...+.+.++..+...+++|+++|+++.++.++...++..+|.+++.++
T Consensus 93 ~l~al------------Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~i 160 (394)
T COG2814 93 LLSAL------------APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL 160 (394)
T ss_pred HHHHH------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHH
Confidence 98887 466666666666666666777888889999999999999999999999999999999999999
Q ss_pred Hh-hhccchhHHHHHHHHHHHHhhheeCc
Q 011956 429 MK-WSSTGTFFAFSAICSLTVLFVAKLVP 456 (474)
Q Consensus 429 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (474)
-| .++...|+.++.+.++..+..+..+|
T Consensus 161 g~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 161 GQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99 77778888888888888888888888
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=112.73 Aligned_cols=153 Identities=19% Similarity=0.131 Sum_probs=110.2
Q ss_pred HHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHH
Q 011956 295 ASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLA 371 (474)
Q Consensus 295 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (474)
.|.+.++.+.+. +.......++..++.++.|++.||+|||+.+..+..+..++.+..... ++...
T Consensus 28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~ 95 (385)
T TIGR00710 28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS------------NNIET 95 (385)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------------ccHHH
Confidence 444444545443 367777788899999999999999999999988887777777766552 33334
Q ss_pred HHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHh
Q 011956 372 LVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLF 450 (474)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~ 450 (474)
+....++.+.......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+++.+.+..+..+.
T Consensus 96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (385)
T TIGR00710 96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSAL 175 (385)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 44444444544445566777899999999999999999999999999999999999888 44444555555555555555
Q ss_pred hheeCcCCC
Q 011956 451 VAKLVPETK 459 (474)
Q Consensus 451 ~~~~~~~~~ 459 (474)
..+..||++
T Consensus 176 ~~~~~~~~~ 184 (385)
T TIGR00710 176 IFFILPETL 184 (385)
T ss_pred HHHhCCCCC
Confidence 555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.4e-11 Score=110.86 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=109.9
Q ss_pred cHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHH
Q 011956 294 YASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFL 370 (474)
Q Consensus 294 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (474)
..+.+.++.+.+.. .......++..++.++.|++.||+|||+.+..+..+.+++.+.... .++..
T Consensus 42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~------------~~~~~ 109 (394)
T PRK10213 42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF------------ANSFS 109 (394)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH------------HChHH
Confidence 34555555555543 5666778888899999999999999999999998888887776655 23344
Q ss_pred HHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHH
Q 011956 371 ALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVL 449 (474)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~ 449 (474)
.+...-++.+.......+....++.|.+|+++|+.+.++.....++|..++|.+.+.+.+ .++...+++.+.+..+..+
T Consensus 110 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 110 LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 444444455555555667778889999999999999999999999999999999999988 4444455554544443333
Q ss_pred hhheeCcCC
Q 011956 450 FVAKLVPET 458 (474)
Q Consensus 450 ~~~~~~~~~ 458 (474)
......||.
T Consensus 190 ~~~~~~p~~ 198 (394)
T PRK10213 190 WIIKSLPSL 198 (394)
T ss_pred HHHHHCCCC
Confidence 333334543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=110.35 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=101.5
Q ss_pred cccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhHH-HHHHHHHHHHHHHHHH--hhhHHHHHHHH
Q 011956 61 AQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTM-GFSDIVCIIGWVIIVF--SKAAWWLDLGR 134 (474)
Q Consensus 61 ~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~l~~~r 134 (474)
.+|. ++++.|.+..+.++..+.+.++..++.++.|+++||+ |||+.. .....+..++.++..+ ..+.+...++.
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACM 354 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 4454 4456899999999999999999999999999999999 555433 2222333333333222 23444454555
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHH-HHHHHhccc----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS-MTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
++.|.+..........+..|.+|+++|++++|+.+....+|.. ++|.+.+.+ ||+..|++.+..++++++....
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 5555543332333345678999999999999999888777755 467777666 8999999888877776555543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-11 Score=112.75 Aligned_cols=135 Identities=10% Similarity=0.074 Sum_probs=114.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 011956 70 GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVP 149 (474)
Q Consensus 70 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 149 (474)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.++...+...++|.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789999999999999999999999999999999999999999888878888999999999999999877766777
Q ss_pred hhhhhcCCCCcchhHHHH-HHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHH
Q 011956 150 VYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 150 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~ 204 (474)
.+..+..+++.++...+. .+....+|..+++.+++++ ||+..|.+.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 778888888888776665 5678889999999888877 899999998887766443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-11 Score=113.31 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=105.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcc
Q 011956 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLG 385 (474)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (474)
.++......++..++.+..|+++||+|||+.+..+..+.+++.+...+. .+.+ .+....++.+.....
T Consensus 34 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~l~g~~~~~ 101 (352)
T PF07690_consen 34 IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----------SNFW-LLLIARFLLGIGSGF 101 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----------CCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----------hhHH-HHhhhcccccccccc
Confidence 3477777888999999999999999999998888888888884444432 2333 455555555666566
Q ss_pred ccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHhhheeCc
Q 011956 386 MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVP 456 (474)
Q Consensus 386 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (474)
..+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+ .++...+++.+.+..+..++...+.+
T Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence 777888999999999999999999999999999999999999986 45556666666666666554333333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-11 Score=112.49 Aligned_cols=162 Identities=8% Similarity=-0.030 Sum_probs=108.3
Q ss_pred HHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHh
Q 011956 276 GVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (474)
..++...........++.|..+ .+......+.......++..++.++.|+++||+|||+.+..+..+..++.+......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334434333334444554433 222222334777778888899999999999999999998888777666666655432
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhcc
Q 011956 356 LFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSST 434 (474)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~ 434 (474)
... ..+.+.+....++.+.......+...+++.|..|+++|+.+.++.+....+|..++|.+.+.+.+ .++.
T Consensus 86 ~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~ 158 (365)
T TIGR00900 86 LLG-------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIK 158 (365)
T ss_pred HcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 110 11344444444455555555667778999999999999999999999999999999999999988 4444
Q ss_pred chhHHHHHHHH
Q 011956 435 GTFFAFSAICS 445 (474)
Q Consensus 435 ~~~~~~~~~~~ 445 (474)
..+++.+....
T Consensus 159 ~~~~~~~~~~~ 169 (365)
T TIGR00900 159 WAIWVDAVGFA 169 (365)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=112.54 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=106.6
Q ss_pred ccccccc-ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHH
Q 011956 61 AQSGITN-DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS---KAAWWLDLGRLL 136 (474)
Q Consensus 61 ~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l 136 (474)
..|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+++..+..+.+++..+..+. ++.+.+.+.-++
T Consensus 283 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (471)
T PRK10504 283 MTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFL 362 (471)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 3443443 589999999999999999999999999999999999999999999888877766653 344445566778
Q ss_pred HHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
.|++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+++.+
T Consensus 363 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 363 QGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988899999999999999999999999999999999999888766
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=110.86 Aligned_cols=156 Identities=16% Similarity=0.170 Sum_probs=108.7
Q ss_pred HhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccch
Q 011956 292 AFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
....|.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+.....++....... ++
T Consensus 23 ~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~------------~~ 90 (392)
T PRK10473 23 LVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA------------ET 90 (392)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh------------Cc
Confidence 3456666666555544 55666777888899999999999999999888877777776665542 22
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHH
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLT 447 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~ 447 (474)
........++.+.......+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+ .++...+.+.+.+..+.
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~ 170 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV 170 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence 23333333334444444455667889999999999999999999999999999999988876 44444555555555555
Q ss_pred HHhhheeCcCCC
Q 011956 448 VLFVAKLVPETK 459 (474)
Q Consensus 448 ~~~~~~~~~~~~ 459 (474)
.++.....+|++
T Consensus 171 ~~~~~~~~~~~~ 182 (392)
T PRK10473 171 LLLSLFILKETR 182 (392)
T ss_pred HHHHHHHcCCCC
Confidence 555455555543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=111.53 Aligned_cols=149 Identities=10% Similarity=0.162 Sum_probs=116.3
Q ss_pred ccccccCCChhhHHHHHH-HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHHHHHH
Q 011956 64 GITNDLGLSVAEYSLFGS-ILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFS-KAAWWLDLGRLLVG 138 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s-~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G 138 (474)
.+.+++|.+.++.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-+++.
T Consensus 248 ~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~ 327 (491)
T PRK11010 248 FLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFEN 327 (491)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 456779999999999974 6668999999999999999999998877666555544332 233 35555555666766
Q ss_pred hhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhccCCC
Q 011956 139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPES 212 (474)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~~~~ 212 (474)
++.|...+...++..+..+++.+++..++.+...++|..+++++.+.+ ||+..|.+.++.++++++...+++++
T Consensus 328 ~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 328 LCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666677788889999999999999999999999988887777766 89999999888888877666655543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-11 Score=112.39 Aligned_cols=160 Identities=15% Similarity=0.127 Sum_probs=101.1
Q ss_pred HHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeehhhhHHHHHHHHHHHhhhcc
Q 011956 281 VLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVSAAGTCLGCLLAALSFLFQD 359 (474)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (474)
.+..++....++.|+...++....+.+...........++.+++|+++||+ |||+.+..+.++..++.+++....
T Consensus 22 ~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~---- 97 (493)
T PRK15462 22 YFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE---- 97 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh----
Confidence 333333344555555443222222233566666777788899999999999 999999888888887776554310
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccch
Q 011956 360 LQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPIN--MKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGT 436 (474)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~ 436 (474)
...........+ .....+...+...+++.|.+|++ +|.++.++.+...++|+.++|.+.|++.+ .++...
T Consensus 98 ------~~~~~~~l~l~l-i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~ 170 (493)
T PRK15462 98 ------IHPSFLYLSLAI-IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMG 170 (493)
T ss_pred ------cchhHHHHHHHH-HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHH
Confidence 111111221112 22222334455568899999875 69999999999999999999999999987 444444
Q ss_pred hHHHHHHHHHHHHhhh
Q 011956 437 FFAFSAICSLTVLFVA 452 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~ 452 (474)
+.+ +++..+.+++.+
T Consensus 171 F~i-aaigm~l~li~~ 185 (493)
T PRK15462 171 FGL-AAVGMIAGLVIF 185 (493)
T ss_pred HHH-HHHHHHHHHHHH
Confidence 444 333444444333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-10 Score=97.13 Aligned_cols=153 Identities=17% Similarity=0.300 Sum_probs=120.0
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh-------hhHHHHH
Q 011956 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-------KAAWWLD 131 (474)
Q Consensus 59 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~ 131 (474)
+..-|++++.+|+|.+|...+.+.-.+|..+ .++.|.+.|++|+|.++.+|.+...+|..+...+ .++|.+.
T Consensus 22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~ 100 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC 100 (250)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence 3445569999999999999999999999987 5889999999999999999999999998887653 4778888
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---h-hhHHHHHhHHHHHHHHHHhh
Q 011956 132 LGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---N-WRILALIGTIPCLVQLIGLC 207 (474)
Q Consensus 132 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~-wr~~f~~~~~~~~~~~~~~~ 207 (474)
+..++.|.+.+....+......+.||+ +||++.|+.-...+++..+-..+...+ + -+..+.+.....++.++..+
T Consensus 101 ~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~ 179 (250)
T PF06813_consen 101 LFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMF 179 (250)
T ss_pred HHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhh
Confidence 888898888887777777777789975 699999999999999988877666555 2 23333333344455555555
Q ss_pred ccCCCh
Q 011956 208 FIPESP 213 (474)
Q Consensus 208 ~~~~~p 213 (474)
++++.|
T Consensus 180 ~vr~~~ 185 (250)
T PF06813_consen 180 FVRPVP 185 (250)
T ss_pred heeccC
Confidence 555444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=7e-11 Score=115.55 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=116.1
Q ss_pred hhhHhcHHHHHHHcCCc---chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccc
Q 011956 289 NGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIK 365 (474)
Q Consensus 289 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (474)
.......+.+.++.+.+ .++......++..++.++.|+++||+|||+.+..+..+..++.+....
T Consensus 19 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------------ 86 (485)
T TIGR00711 19 TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV------------ 86 (485)
T ss_pred HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC------------
Confidence 34445556665555544 347788888999999999999999999999998888887777776654
Q ss_pred cchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHH
Q 011956 366 ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAIC 444 (474)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~ 444 (474)
..+...+....++.+.......+....++.|.+|+++|+.+.++......+|..++|.+.+.+.+ .++...+++.+.+.
T Consensus 87 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~ 166 (485)
T TIGR00711 87 APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIG 166 (485)
T ss_pred cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHH
Confidence 23444445555555655556677778999999999999999999999999999999999999988 45555555555554
Q ss_pred HHHHHhhheeCcCC
Q 011956 445 SLTVLFVAKLVPET 458 (474)
Q Consensus 445 ~~~~~~~~~~~~~~ 458 (474)
.+..++..+..+++
T Consensus 167 ~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 167 IIVVVVAFFILPRD 180 (485)
T ss_pred HHHHHHHHHHcCCc
Confidence 44444444445543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-10 Score=107.53 Aligned_cols=149 Identities=24% Similarity=0.276 Sum_probs=133.2
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCch--hHHHHHHHHHHHHHHHHHH--------hhhHHHHHHH
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR--GTMGFSDIVCIIGWVIIVF--------SKAAWWLDLG 133 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~ 133 (474)
.-.+++|++..+...+.-+..+...+|++++|++.||+|.| +++.++++++.+..+...+ .++-+.+.+.
T Consensus 307 ~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~ 386 (477)
T PF11700_consen 307 YATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL 386 (477)
T ss_pred HHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence 34568999999999999999999999999999999999999 9999999888776666655 6788899999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
-++.|+..|...+..-++.++..|+++.+..+|++....-....+||.+.+.+ +-|+.+....++.++.+++.++
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998887 5788888888888887777777
Q ss_pred cCCC
Q 011956 209 IPES 212 (474)
Q Consensus 209 ~~~~ 212 (474)
++.+
T Consensus 467 v~~~ 470 (477)
T PF11700_consen 467 VDVE 470 (477)
T ss_pred ccch
Confidence 7654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=109.30 Aligned_cols=144 Identities=13% Similarity=0.044 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
+.......++..++.+..|+++||+|||+.+..+.++.+++.+........ ..+...+....++.+......
T Consensus 64 g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~l~g~~~g~~ 135 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--------TSSIAIMFVLLFLNGWFQGMG 135 (438)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--------cchHHHHHHHHHHHHHHhhcc
Confidence 377778888899999999999999999998887777777666655432100 122223333333344444444
Q ss_pred cchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hhccchhHHHHHHHHHHHHhhheeCcCC
Q 011956 387 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICSLTVLFVAKLVPET 458 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
.+.....+.|.+|+++|+++.++.+....+|+.++|.+.+...+ .++...+++.+.+.++..++.+++.||.
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 55566788899999999999999999999999999988876554 3444455555555555555555555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=107.14 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcc
Q 011956 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLG 385 (474)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (474)
.++......++..++.++.|+++||+|||+.+..+.++..++.+...+. ..+...+....++.+....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~- 106 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----------VQSYSVLLLLRLFIGIAGG- 106 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHhch-
Confidence 3477778888999999999999999999999988888888887776653 1033333333444444333
Q ss_pred ccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 386 MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 386 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
..+....++.|.+|+++|+.+.++.....++|..+++.+.+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 107 SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334456888999999999999999998888888888888776654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.4e-10 Score=108.44 Aligned_cols=145 Identities=17% Similarity=0.309 Sum_probs=127.7
Q ss_pred ccccccc-cccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 011956 60 PAQSGIT-NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG 138 (474)
Q Consensus 60 ~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (474)
..+|.+. +++|.++..+|++.+++.+|..++.+..+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3456554 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHH
Q 011956 139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~ 204 (474)
++.....+...+.+.+..|++.|||+++++.+....+..+|..+.+.+ |-+..+.+.++..++..+
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999899999999999999999999999988888888888887776 777788777665554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-11 Score=108.35 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=137.3
Q ss_pred HHHHHHHHhhccchhhHhcHHHHHHHcC---CcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHH
Q 011956 276 GVGLMVLQQFGGVNGIAFYASSIFISAG---FSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAA 352 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 352 (474)
...+.......=-+.++.-.+.+-+..+ ...+++.....+...+..++.|++.||++|++++.+|..+-.++.++..
T Consensus 37 il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~ 116 (493)
T KOG1330|consen 37 ILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG 116 (493)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH
Confidence 3333333333333444444444444333 3445888899999999999999999999999999999999888888888
Q ss_pred HHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-h
Q 011956 353 LSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-W 431 (474)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~ 431 (474)
+. ...+.+...=.+.+.+...+.|+..+.++|.+|.++|+++.++.+....+|..+|-+..+.+.+ .
T Consensus 117 fs------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 117 FS------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HH------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 73 5566666777777777888899999999999999999999999999999999998888877777 2
Q ss_pred h-ccchhHHHHHHHHHHHHhhheeCcCCCCCCHHHHHh
Q 011956 432 S-STGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQA 468 (474)
Q Consensus 432 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (474)
+ +.+.+...+++.++.+++..++.+|.+++..+|.+.
T Consensus 185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred cceEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 3 556677777777777777778888877655544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-11 Score=111.01 Aligned_cols=141 Identities=13% Similarity=0.054 Sum_probs=104.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcc
Q 011956 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLG 385 (474)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (474)
.+.......++..++.++.|+++||+|||+.+..+..+..++.++..+. .+...+....++.+.+...
T Consensus 32 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~ 99 (379)
T TIGR00881 32 LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS------------TSLWVMAALWALNGIFQGM 99 (379)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHhhccc
Confidence 3477778888999999999999999999999998888888777776653 3344444555555555566
Q ss_pred ccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHh-hhccchhHHHHHHHHHHHHhhheeCcCC
Q 011956 386 MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISF-TFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPET 458 (474)
Q Consensus 386 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~-i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
..+...+++.|.+|+++|+.+.++.+....+|..++|. +.+.+.+ .++...+.+.+.+..+..++..+..+++
T Consensus 100 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 100 GWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred cCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 67777889999999999999999999999999999994 5555555 3444445555555555555555555543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-10 Score=108.86 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=97.0
Q ss_pred HhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccch
Q 011956 292 AFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
.+..+.+.++.+.+. +.......++..++.++.|+++||+|||+.+..+....+++.+...+. .+
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------------~~ 105 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA------------SG 105 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------------hH
Confidence 333444444444433 367777888899999999999999999999999888888887776653 33
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~ 431 (474)
...+...-.+.+.......+....++.|..|+++|+++.++......+|..+++.+.+.+.+.
T Consensus 106 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 344444444555554556667778899999999999999999999999999999998888774
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-11 Score=113.74 Aligned_cols=154 Identities=14% Similarity=0.024 Sum_probs=104.3
Q ss_pred HHHHHHHHhhccchhhHhcHHHH--HHHcCCcchhHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeehhhhHHHHHHHHH
Q 011956 276 GVGLMVLQQFGGVNGIAFYASSI--FISAGFSGSIGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAAGTCLGCLLAA 352 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~ 352 (474)
..++..+..+.....++.|+... ++......+.......++..++.+++|+++|| +|||+.+..+..+.+++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~ 97 (475)
T TIGR00924 18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 33333344333344444444332 22222234477788888999999999999999 8999999999988888887776
Q ss_pred HHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 353 LSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINM---KGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
+. .+...+.....+.+.......+...+.+.|.+|+++ |+.+.++.+...++|..++|.+.+.+.
T Consensus 98 ~~------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 98 MS------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred hc------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 52 222223333333444444556777788888887654 888999999999999999999999998
Q ss_pred hh-hccchhHHHH
Q 011956 430 KW-SSTGTFFAFS 441 (474)
Q Consensus 430 ~~-~~~~~~~~~~ 441 (474)
+. ++...+...+
T Consensus 166 ~~~g~~~~f~~~~ 178 (475)
T TIGR00924 166 ENYGYHVGFNLAA 178 (475)
T ss_pred HhcChHHHHHHHH
Confidence 84 5444444444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=109.69 Aligned_cols=136 Identities=13% Similarity=0.098 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
++....+.+...+..++.|+++||+|||+++..+..+..++.+.+.+. .+. ....++.+......
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~------------~~~---~~~r~l~G~~~a~~ 105 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG------------IHP---LLAYGLVGIGAAAY 105 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH------------HHH---HHHHHHHHHHHHHH
Confidence 366677778889999999999999999999999888877766655442 111 22223455556667
Q ss_pred cchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhhheeCcCC
Q 011956 387 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPET 458 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
.|...+++.|.+|+++|++++|+.+....++..+||.+.|.+.+......+.+.+.. .+...+..+..||.
T Consensus 106 ~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~ 176 (393)
T PRK11195 106 SPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALI-YLLAALFNLFIPRL 176 (393)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCC
Confidence 788889999999999999999999999999999999999999985433333333222 22233334455543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=107.65 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=110.5
Q ss_pred hcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchH
Q 011956 293 FYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPF 369 (474)
Q Consensus 293 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (474)
..++.+.++.+.+. +.......++..++.++.|++.||+|||+.+..+..+.+++.++..+. ++.
T Consensus 24 ~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~------------~~~ 91 (382)
T PRK10091 24 GVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS------------SSY 91 (382)
T ss_pred hChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh------------CcH
Confidence 34455555555443 477788889999999999999999999999999888888877776653 334
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHH
Q 011956 370 LALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTV 448 (474)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~ 448 (474)
..+...-++.+.......+.....+.|..|+++|+.+.+.......++..++|.+.+.+.+ .++...+.+.+.+..+..
T Consensus 92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~ 171 (382)
T PRK10091 92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVL 171 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 4444444445544444455556778898998899999999999999999999999998887 444455555555544444
Q ss_pred HhhheeCcCCC
Q 011956 449 LFVAKLVPETK 459 (474)
Q Consensus 449 ~~~~~~~~~~~ 459 (474)
+...+..||.+
T Consensus 172 ~~~~~~lp~~~ 182 (382)
T PRK10091 172 ASIYFWVPDIR 182 (382)
T ss_pred HHHHHhCCCCC
Confidence 44444556543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-10 Score=105.89 Aligned_cols=153 Identities=20% Similarity=0.221 Sum_probs=105.2
Q ss_pred HHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHH
Q 011956 295 ASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLA 371 (474)
Q Consensus 295 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (474)
.+.+.++.+.+.. .......++..++.++.|.++||+|||+.+..+.....++.+..... .+...
T Consensus 36 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------------~~~~~ 103 (406)
T PRK15402 36 MLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA------------QSIEQ 103 (406)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------------ccHHH
Confidence 4444455555443 56667778888999999999999999999888877777776665542 23333
Q ss_pred HHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHh
Q 011956 372 LVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLF 450 (474)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~ 450 (474)
+.....+.+.......+.....+.|.+|++++..+.++......++..++|.+.+.+.+ .++...+++.+++..+..+.
T Consensus 104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~ 183 (406)
T PRK15402 104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFG 183 (406)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 33333443443334455667888899999999999999988888999999999999888 44445555555555554444
Q ss_pred hheeCcCCC
Q 011956 451 VAKLVPETK 459 (474)
Q Consensus 451 ~~~~~~~~~ 459 (474)
.++..||++
T Consensus 184 ~~~~~~~~~ 192 (406)
T PRK15402 184 LWRAMPETA 192 (406)
T ss_pred HHHhCCCCC
Confidence 444555543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=107.44 Aligned_cols=132 Identities=16% Similarity=0.156 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccc
Q 011956 308 IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMG 387 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (474)
......-.+.++.-+..+++.+|+|+-+++..++.+..+=++.+... .++|.++.+-++.+.....+.
T Consensus 410 v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------------~n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------------QNPWMVLPIEILQGITHALIW 477 (618)
T ss_pred ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh------------cCchheeeHHHHHHHHHHHHH
Confidence 44444556677777889999999999999999988888888777764 444555555555555545555
Q ss_pred chhhhhhcccCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHhh
Q 011956 388 GIPWVIMSEVFPINMKGSAGSLVTLVS-WLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFV 451 (474)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 451 (474)
....+|++...||+.+.++.++..... .+|-.+|..++|.+.+ .+....+.++++.|++..++.
T Consensus 478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 555699999999999999999997665 4888999999999988 455555666666555554443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-10 Score=109.59 Aligned_cols=134 Identities=19% Similarity=0.166 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 011956 80 GSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA--WWLDLGRLLVGYGMGLLSYVVPVYIAEITP 157 (474)
Q Consensus 80 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 157 (474)
.....+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556777888999999999999999999999999888888776644 445556667777777788888999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhccc--hhhHHHHHhHHHHHHHHHHhhccCCCh
Q 011956 158 KNLRGGFTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPCLVQLIGLCFIPESP 213 (474)
Q Consensus 158 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~~~~~p 213 (474)
++.|++++++.+....+|.+++|.+.+.. ++..++++.+...++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999998832 567788888887777777777888874
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-10 Score=107.97 Aligned_cols=118 Identities=18% Similarity=0.344 Sum_probs=100.8
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhh
Q 011956 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-KAAWWLDLGRLLVGYGMGLLSY 146 (474)
Q Consensus 68 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~ 146 (474)
.++ +..+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.++..+. ++.+.+++..++.|++.+...+
T Consensus 252 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 330 (437)
T TIGR00792 252 VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTG 330 (437)
T ss_pred ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344 56678888888999999999999999999999999999998888887777665 4667777888899999999999
Q ss_pred hhhhhhhhcCC-------CCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 147 VVPVYIAEITP-------KNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 147 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
...++++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 331 LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998865 45569999999999999999999888766
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=110.99 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=110.9
Q ss_pred chhhHhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccccc
Q 011956 288 VNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWI 364 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (474)
.+.+..-.|.+.++.+.+. ++....+.++...+.+..|+++||+|||+.+..+..+..++.+.....
T Consensus 22 ~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a---------- 91 (495)
T PRK14995 22 ATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS---------- 91 (495)
T ss_pred HHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc----------
Confidence 3344444556555554433 467777788888888999999999999999999998888888877763
Q ss_pred ccchHHHHHHHHHHHHHHhccccchhhhhhccc-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHH
Q 011956 365 KATPFLALVGVLVYTGSFSLGMGGIPWVIMSEV-FPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSA 442 (474)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~ 442 (474)
++...++..-.+.+.......+.....+.+. .|+++|+++.|+......+|..+||.+.|.+.+ .++.+.+++...
T Consensus 92 --~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~ 169 (495)
T PRK14995 92 --PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVP 169 (495)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence 3444444444444444444555555555554 467899999999999999999999999999998 455555555555
Q ss_pred HHHHHHHhhheeCcCC
Q 011956 443 ICSLTVLFVAKLVPET 458 (474)
Q Consensus 443 ~~~~~~~~~~~~~~~~ 458 (474)
++.+..++..+..|+.
T Consensus 170 ~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 170 IVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5555444444555554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=103.20 Aligned_cols=143 Identities=12% Similarity=-0.017 Sum_probs=109.5
Q ss_pred cccccccCCChhhHHHHHHHHHH-HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHH
Q 011956 63 SGITNDLGLSVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF------SKAAWWLDLGRL 135 (474)
Q Consensus 63 ~~i~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r~ 135 (474)
+.+.+|.|.++++.|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++.+.+.....
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 33556789999999999888764 66777899999999999999998877766443332221 123344455556
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCC-CcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHH
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPK-NLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG 205 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~ 205 (474)
+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+ ||+..|++.+++.++..+.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 66777788888888888888776 7889999999999999999999999877 7888888877766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=103.85 Aligned_cols=143 Identities=14% Similarity=0.207 Sum_probs=105.3
Q ss_pred HHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc----cCchhHHH-HHHHHHHHHH
Q 011956 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRRGTMG-FSDIVCIIGW 118 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~~l~-~~~~~~~~~~ 118 (474)
.+-..+......+ ..+++.+++|++....+.+--+-.+...+.||+.|..+|| |||||.++ .+....+++.
T Consensus 41 a~Gvqf~wA~els----y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l 116 (498)
T KOG0637|consen 41 AAGVQFGWALELS----YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSL 116 (498)
T ss_pred HHHHHHHHHHHhc----cccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHH
Confidence 3333444444443 3444677889988888888888889999999999999994 89877764 4555566666
Q ss_pred HHHHHhhhHHH-----------------HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchh-HHHHHHHHHHHHHHHHH
Q 011956 119 VIIVFSKAAWW-----------------LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGG-FTTVHQLMICIGVSMTY 180 (474)
Q Consensus 119 ~~~~~~~~~~~-----------------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~~~ 180 (474)
++.+++.++.. ++++--+.=++.-.....+-+++.|...++++.+ +++++....++|..+|.
T Consensus 117 ~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY 196 (498)
T KOG0637|consen 117 FLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGY 196 (498)
T ss_pred hhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeee
Confidence 67777654432 3333344444555677888999999998777766 99999999999999999
Q ss_pred HHhccchhhH
Q 011956 181 LIGAFLNWRI 190 (474)
Q Consensus 181 ~l~~~l~wr~ 190 (474)
.++.+.+|+-
T Consensus 197 ~~g~y~~~~~ 206 (498)
T KOG0637|consen 197 ALGSYLGLYK 206 (498)
T ss_pred ecccccCceE
Confidence 9998887763
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.5e-10 Score=105.58 Aligned_cols=148 Identities=14% Similarity=0.033 Sum_probs=97.7
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH--H--hhhHHHHHHHHHHHHhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV--F--SKAAWWLDLGRLLVGYG 140 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l~G~~ 140 (474)
+.+++|.+..+.++..+...++..+++++.|+++||+|||+++.++.++.++...... . .++....+..-.+.+++
T Consensus 270 l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (432)
T PRK10406 270 LVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLI 349 (432)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4567899999999999998888999999999999999999988776665443332221 1 12333222222223333
Q ss_pred hhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHH-HHHHHHHHhccc---h-hhHHHHHhHHHHHHHHHHhhccCCC
Q 011956 141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL---N-WRILALIGTIPCLVQLIGLCFIPES 212 (474)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l---~-wr~~f~~~~~~~~~~~~~~~~~~~~ 212 (474)
.+...+....++.|++|++.|++++|+.+....+ .....|.+.+.+ | |...+++.++..++.++..++++++
T Consensus 350 ~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~ 426 (432)
T PRK10406 350 VSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRK 426 (432)
T ss_pred HHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444455677889999999999999998765443 233466665554 3 5556666666666665555555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=105.88 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=104.5
Q ss_pred HHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHH
Q 011956 297 SIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALV 373 (474)
Q Consensus 297 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (474)
.+.++.+.+.. .....+.++..++.+..|+++||+|||+.+..+..+..++.+.... ..+...+.
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~------------a~~~~~l~ 108 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF------------TTSMTQFL 108 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH------------cCCHHHHH
Confidence 33344444433 6667777888899999999999999999998887777777666655 23333334
Q ss_pred HHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHHhhh
Q 011956 374 GVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVA 452 (474)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 452 (474)
..-++.+.......+.......|.+|+++++++.++.+....++..++|.+.+.+.+. ++...+++.++...+..+...
T Consensus 109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4333444333333445567888999999999999999999999999999999988874 555555555555455444444
Q ss_pred eeCcCCC
Q 011956 453 KLVPETK 459 (474)
Q Consensus 453 ~~~~~~~ 459 (474)
+..||++
T Consensus 189 ~~lp~~~ 195 (413)
T PRK15403 189 LAMPETV 195 (413)
T ss_pred HhCCCCc
Confidence 4566643
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=103.34 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccc
Q 011956 308 IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMG 387 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (474)
+......+...+.++..|++.||+|.|+++..+.++..+..+...+..... .+++..+....++.+.. ....
T Consensus 74 ~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~-------~~s~~~lli~r~l~Gig-g~~f 145 (462)
T PRK15034 74 LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP-------NTPFGIFIVIALLCGFA-GANF 145 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc-------CCCHHHHHHHHHHHHHH-HHhH
Confidence 566667777888888899999999999999888888777777666531000 13444444444444444 3455
Q ss_pred chhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 388 GIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
+.....+++.+|+++||++.|+.....++|..+++.+.+.+.
T Consensus 146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 667788999999999999999998777777776666655433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-10 Score=105.28 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=103.5
Q ss_pred HHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHH
Q 011956 295 ASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLA 371 (474)
Q Consensus 295 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (474)
.+.+.++.+.+. +.......++..++.++.|+++||+|||+.+..+.....++.+..... .+...
T Consensus 31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------~~~~~ 98 (394)
T PRK11652 31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA------------HSLTV 98 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------------ccHHH
Confidence 344444445444 366777788889999999999999999999888877776666655442 23333
Q ss_pred HHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHh
Q 011956 372 LVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLF 450 (474)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~ 450 (474)
+....++.+.......+.......|.+++++++.+.+..+....++..++|.+.+.+.+ .++...+++.+....+..+.
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 33333344433333345555677888888899999999999999999999999999887 34444555555444444444
Q ss_pred hheeCcCCC
Q 011956 451 VAKLVPETK 459 (474)
Q Consensus 451 ~~~~~~~~~ 459 (474)
..++.||++
T Consensus 179 ~~~~~~~~~ 187 (394)
T PRK11652 179 MARWMPETR 187 (394)
T ss_pred HHHhCCccC
Confidence 444556543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=105.92 Aligned_cols=153 Identities=17% Similarity=0.044 Sum_probs=98.7
Q ss_pred hHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccc
Q 011956 291 IAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKAT 367 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (474)
...+.+.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+.++..++.++..+. .
T Consensus 55 ~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------------~ 122 (476)
T PLN00028 55 AAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV------------S 122 (476)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh------------c
Confidence 34445566666666443 45566667888899999999999999998887777766666555542 2
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----------hhccchh
Q 011956 368 PFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK----------WSSTGTF 437 (474)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~----------~~~~~~~ 437 (474)
+...+....++.+.+.....+ ...++.|.+|+++|+.+.|+.+...++|..+++.+.+.+.+ .++...+
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f 201 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF 201 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 233333333333333333333 34578899999999999999998888888888777765533 1344455
Q ss_pred HHHHHHHHHHHHhhheeCc
Q 011956 438 FAFSAICSLTVLFVAKLVP 456 (474)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~ 456 (474)
++.+++.++..+..+++.+
T Consensus 202 ~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 202 FVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 5556555555444444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.8e-10 Score=107.58 Aligned_cols=152 Identities=15% Similarity=0.079 Sum_probs=102.1
Q ss_pred ccccccccCCChhhHHH------------HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhh---
Q 011956 62 QSGITNDLGLSVAEYSL------------FGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA--- 126 (474)
Q Consensus 62 ~~~i~~~~~~s~~~~g~------------~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--- 126 (474)
.|.+.++.|.+..+.+. ......++..++.+++++++||+|||++++++..+.+++..+.++..+
T Consensus 311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~ 390 (502)
T TIGR00887 311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS 390 (502)
T ss_pred cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55566677775432211 233444566678889999999999999998888887777666554321
Q ss_pred -HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-h-------------hhHH
Q 011956 127 -AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-N-------------WRIL 191 (474)
Q Consensus 127 -~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-~-------------wr~~ 191 (474)
...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+ + +...
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 470 (502)
T TIGR00887 391 THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV 470 (502)
T ss_pred hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHH
Confidence 111111111112222223456677789999999999999999999999999998877654 2 3456
Q ss_pred HHHhHHHHHHHHHHhhccCCCh
Q 011956 192 ALIGTIPCLVQLIGLCFIPESP 213 (474)
Q Consensus 192 f~~~~~~~~~~~~~~~~~~~~p 213 (474)
|++.++..++..+..+++||+.
T Consensus 471 ~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 471 LEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHheEeccCC
Confidence 7777777776656667789874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=108.79 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=145.8
Q ss_pred HHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccC--chhHHHHHHHHHHHHHHHHH
Q 011956 45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG--RRGTMGFSDIVCIIGWVIIV 122 (474)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~~~~~~~~ 122 (474)
.++..............+|...++.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.++
T Consensus 304 ~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p 383 (509)
T KOG2504|consen 304 ALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLP 383 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444456688888999999999999999999999999999999999988 56667888999999999999
Q ss_pred HhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHH
Q 011956 123 FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTI 197 (474)
Q Consensus 123 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~ 197 (474)
+.++++.+...-.+.|++.|........++.|..+.++-+.+.|+.....+++..+||++++.+ +|...|+..++
T Consensus 384 ~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~ 463 (509)
T KOG2504|consen 384 FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGL 463 (509)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcCh
Confidence 9999999999999999999998888888999999999999999999999999999999999987 69999999999
Q ss_pred HHHHHHHHhhccC
Q 011956 198 PCLVQLIGLCFIP 210 (474)
Q Consensus 198 ~~~~~~~~~~~~~ 210 (474)
..++....++..+
T Consensus 464 ~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 464 CFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHhH
Confidence 9888887777766
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=108.34 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 308 IGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
.....+.....+..+++|+++|| +|||+++..+.++..++.+.+.+. ......+.......+...+..
T Consensus 54 ~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~-----------~~~~~ll~~~~~l~~ig~g~~ 122 (489)
T PRK10207 54 ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS-----------LLKPDLIFIALGTIAVGNGLF 122 (489)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh-----------ccchhHHHHHHHHHHhccccc
Confidence 44455555666667799999999 999999999999999988877763 111222222333344555556
Q ss_pred cchhhhhhcccCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHhhh
Q 011956 387 GGIPWVIMSEVFPIN--MKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVA 452 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
.|...+.+.|.+|++ +|+.+.++.+...++|..++|.+.|++.+ .++...+++ ..+..+..++.+
T Consensus 123 ~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i-~~i~~~~~~~~~ 190 (489)
T PRK10207 123 KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL-CGAGLIIALLVY 190 (489)
T ss_pred cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH-HHHHHHHHHHHH
Confidence 677789999999876 45789999999999999999999999998 444344444 433444444333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.9e-10 Score=88.80 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhh
Q 011956 312 AMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPW 391 (474)
Q Consensus 312 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (474)
...++.+++.+..+++.||++||+.+..+.....++.+..... .+.........+.+.......+...
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~ 73 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------------SNITVLIIARFLQGFGAAFALVAGA 73 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456788889999999999999998887777666666555442 2233333334444444444566777
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHHhhheeCcC
Q 011956 392 VIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPE 457 (474)
Q Consensus 392 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
.+..|..|+++|+++.++.+....+|..++|.+.+.+.+. ++...+.+.+....+..+...+..+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 8899999999999999999999999999999999999884 33344555555555555554444443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=104.30 Aligned_cols=144 Identities=17% Similarity=0.103 Sum_probs=97.4
Q ss_pred HHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHH
Q 011956 297 SIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALV 373 (474)
Q Consensus 297 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (474)
.+.++.+.+. +.......++..++.++.|+++||+|||+.+..+..+..++.+...+. .+...+.
T Consensus 31 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~l~ 98 (401)
T PRK11043 31 AIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------------ESAAQLL 98 (401)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------------cCHHHHH
Confidence 3344444443 366777788889999999999999999999888777776666655542 2333333
Q ss_pred HHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHhhh
Q 011956 374 GVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVA 452 (474)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
...++.+.......+.....+.|.+|+++++...+..+....++..++|.+.+.+.+ .++...+++.+....+..+...
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 333333333223334445778899998889999999999999999999999999988 4444445555544444444333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=105.53 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=107.5
Q ss_pred HHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHH
Q 011956 296 SSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLAL 372 (474)
Q Consensus 296 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (474)
+.+.++.+.+. +.......++..++.++.|+++||+|||+.+..+..+..++....... .+...+
T Consensus 15 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~ 82 (377)
T PRK11102 15 PVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------------QTIDQL 82 (377)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH------------ccHHHH
Confidence 33344444433 366777888899999999999999999999988888877777776652 233333
Q ss_pred HHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHhh
Q 011956 373 VGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFV 451 (474)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 451 (474)
....++.+.+.....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+.+..+..++.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 3444444444444556667889999999999999999999999999999999999988 344445555555555555554
Q ss_pred heeCcCC
Q 011956 452 AKLVPET 458 (474)
Q Consensus 452 ~~~~~~~ 458 (474)
.+..+|+
T Consensus 163 ~~~~~~~ 169 (377)
T PRK11102 163 FFFIPET 169 (377)
T ss_pred HHhCCcc
Confidence 4555554
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=107.94 Aligned_cols=164 Identities=14% Similarity=0.075 Sum_probs=97.6
Q ss_pred HhhHh-hHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhh-cCCcceee
Q 011956 264 LFQRK-YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLL 338 (474)
Q Consensus 264 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~ 338 (474)
.+++| .++......+...+..+......+.|+.. ..+.+.. ..............+++|+++|| +|||+.+.
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~---~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~ 92 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVK---QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM 92 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 33443 24444434344444433333444444433 2333332 33333333444445689999999 59999999
Q ss_pred ehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCc--hhhHHHHHHHHHHH
Q 011956 339 VSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINM--KGSAGSLVTLVSWL 416 (474)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~ 416 (474)
.+..+..++..++.+. ......+.....+.+...+...+...++..|.+|+++ ++.+.++.+...++
T Consensus 93 ~g~~~~~ig~~l~~~~-----------~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i 161 (500)
T PRK09584 93 LGAIVLAIGYALVAWS-----------GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI 161 (500)
T ss_pred HHHHHHHHHHHHHHHh-----------cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH
Confidence 8888888777666542 1122222222233344444455666688899987543 45678889999999
Q ss_pred HHHHHHHHHHHHHhh-hccchhHHHH
Q 011956 417 GSWIISFTFNFLMKW-SSTGTFFAFS 441 (474)
Q Consensus 417 g~~i~~~i~g~~~~~-~~~~~~~~~~ 441 (474)
|..++|.+.|++.+. ++...+.+.+
T Consensus 162 G~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 162 GSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 999999999999984 4444444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-08 Score=97.99 Aligned_cols=143 Identities=20% Similarity=0.270 Sum_probs=117.8
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHH
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKA--------AWWLDLGR 134 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r 134 (474)
.+.+.+|.+.++...+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++.. ....+++-
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL 92 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL 92 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence 4556789999999999999999999999999999996 69999999999999999988877421 23356777
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCc---chhHHHHHHHHHHHHHHHHHHHhccc-----------hhhHHHHHhHHHHH
Q 011956 135 LLVGYGMGLLSYVVPVYIAEITPKNL---RGGFTTVHQLMICIGVSMTYLIGAFL-----------NWRILALIGTIPCL 200 (474)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~l-----------~wr~~f~~~~~~~~ 200 (474)
.+..+|.|++-|+..+...|.+++++ |.....++..+.++|..+++++..++ +|...|.+.++..+
T Consensus 93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ 172 (654)
T TIGR00926 93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI 172 (654)
T ss_pred HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence 88899999999999999999998653 56788888889999999888776554 38888888887777
Q ss_pred HHHHHh
Q 011956 201 VQLIGL 206 (474)
Q Consensus 201 ~~~~~~ 206 (474)
++++..
T Consensus 173 ia~lvf 178 (654)
T TIGR00926 173 LALIVF 178 (654)
T ss_pred HHHHHH
Confidence 655544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=116.83 Aligned_cols=137 Identities=14% Similarity=0.182 Sum_probs=118.7
Q ss_pred ccccccCCChh-hHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 011956 64 GITNDLGLSVA-EYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMG 142 (474)
Q Consensus 64 ~i~~~~~~s~~-~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 142 (474)
.+.+++|.+.. +.+++.+...++..++++++|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45677899998 99999999999999999999999999999999999999888888888888899989899999999999
Q ss_pred hhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHH
Q 011956 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCL 200 (474)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~ 200 (474)
...+...+++.+.+|+++|++++++.+....+|.++++.++..+ ++...|++.+.+.+
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877776655 34455555444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-09 Score=102.13 Aligned_cols=126 Identities=18% Similarity=0.155 Sum_probs=91.5
Q ss_pred ccccc-ccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH-HH---HhhhHHHHHHHHH
Q 011956 61 AQSGI-TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI-IV---FSKAAWWLDLGRL 135 (474)
Q Consensus 61 ~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~-~~---~~~~~~~l~~~r~ 135 (474)
..|.+ ++.+|.+..+.++....+.++..++.+++|+++||+|||+++..+..+..+.... .. ..+++..+.+..+
T Consensus 260 ~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T PRK15075 260 YTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVEL 339 (434)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 34544 4458999999999999999999999999999999999999988765544332221 11 1234444445566
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHH-HHHHHHHHHHHHhccc
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQL-MICIGVSMTYLIGAFL 186 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l 186 (474)
+.|++.+...+....++.|.+|+++|++..++... +..++..++|.+.+.+
T Consensus 340 ~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 340 WLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 66777777677777889999999999999998543 4444566777777665
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=99.68 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=100.5
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (474)
.+|.+.++.|.+..+.+.+.+.+.++..+++++.|++.||+ +||+.+.++..+.+++.+...+.++.+... .-++.|+
T Consensus 219 ~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~ 297 (355)
T TIGR00896 219 WLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGL 297 (355)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHH
Confidence 34556667899999999999999999999999999999999 567777788888888777777665443332 4577899
Q ss_pred hhhhhhhhhhhhhhhcCC-CCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 140 GMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
+.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 298 GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888777776555 45568889998888888889999888776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-09 Score=95.17 Aligned_cols=126 Identities=12% Similarity=0.133 Sum_probs=101.9
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhh
Q 011956 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYV 147 (474)
Q Consensus 68 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 147 (474)
.+|+++++.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++....++...+ .+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999988888888877666665544333 4556889999999999
Q ss_pred hhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhH
Q 011956 148 VPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGT 196 (474)
Q Consensus 148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~ 196 (474)
..+...+..|++ .+++.++. ....+|.++.|++.+.+ |.+..|++..
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 999999988764 56666775 45668889999877766 6677776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-09 Score=100.10 Aligned_cols=143 Identities=14% Similarity=0.199 Sum_probs=99.9
Q ss_pred ccccccCCChhhHHHHHHHHH-HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHH----
Q 011956 64 GITNDLGLSVAEYSLFGSILT-IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFS-KAAWWLDLGR---- 134 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r---- 134 (474)
.+.+++|.++++.+++.+... ++..++.+++|++.||+|+|+.+..+..+..+..+.. ++. ++.+.+++.-
T Consensus 235 ~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (402)
T PRK11902 235 FLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIEN 314 (402)
T ss_pred HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 466789999999999987654 5689999999999999999998887777666554433 343 4556555554
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcc----chhhHHHHHhHHHHHHHHHHhhccC
Q 011956 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF----LNWRILALIGTIPCLVQLIGLCFIP 210 (474)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~----l~wr~~f~~~~~~~~~~~~~~~~~~ 210 (474)
+..|++.+...+....++.+.+|.++++. .+...++|..+++++++. +||+..|.+.++++++.++..+..+
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 315 LCGGMGTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666677777778888877665544 333344555444444444 4999999998888877666554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=105.86 Aligned_cols=141 Identities=12% Similarity=0.002 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
+.......++..++.+..|++.||+|+|+.+..+.++..++.++..+.. ......++..-++.+......
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----------GGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----------HcCchHHHHHHHHHHHhcccc
Confidence 3677788889999999999999999999998888777666665544321 122334455555666666777
Q ss_pred cchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHhhheeCcC
Q 011956 387 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW--SSTGTFFAFSAICSLTVLFVAKLVPE 457 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
.+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+. ++...+.+.++..++..++.+.+.++
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 788889999999999999999999999999999999999999884 55555666655555544444444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=96.42 Aligned_cols=174 Identities=22% Similarity=0.225 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 011956 38 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG 117 (474)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 117 (474)
-...++..-..+.++.+.... ..-..-..++|++..+..++.-...+...++++++|+|.||+|.|+++.+++++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~-~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILA-MGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHH-HHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence 334444444445555433211 1111234599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHH
Q 011956 118 WVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILA 192 (474)
Q Consensus 118 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f 192 (474)
++..-+...-..+.++-.+.|...|.....+-++..+..|++|-++.+|+++...-.+..+||.+.+.+ +-|..+
T Consensus 332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 888888777667778889999999999999999999999999999999999999999999999998877 667777
Q ss_pred HHhHHHHHHHHHHhhccCCC
Q 011956 193 LIGTIPCLVQLIGLCFIPES 212 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~ 212 (474)
....++..+.++..+.+|+.
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 77777777777777777665
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-09 Score=98.11 Aligned_cols=151 Identities=20% Similarity=0.332 Sum_probs=119.6
Q ss_pred ccccccccC-CChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh-hhHHHHHH----HHH
Q 011956 62 QSGITNDLG-LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-KAAWWLDL----GRL 135 (474)
Q Consensus 62 ~~~i~~~~~-~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~ 135 (474)
.+..-+|.| .+.+..+.+.+...+.-...-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...
T Consensus 230 ~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~ 309 (400)
T PF03825_consen 230 FSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQL 309 (400)
T ss_pred HHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 333566776 677788888888888888999999999999999999999999999998888887 55554333 345
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHH-HHHHHHHHHHHhccc----------hhhHHHHHhHHHHHHHHH
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLM-ICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~l----------~wr~~f~~~~~~~~~~~~ 204 (474)
+.|+..+..+.+...++.+..|++.|+++.++++.. .++|..+|..+++++ .|...+.+.+.+.++..+
T Consensus 310 lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~ 389 (400)
T PF03825_consen 310 LHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILV 389 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999998764 689999999999887 345556666665555444
Q ss_pred Hh-hccCCC
Q 011956 205 GL-CFIPES 212 (474)
Q Consensus 205 ~~-~~~~~~ 212 (474)
.+ ++.+|+
T Consensus 390 ~f~~~fk~~ 398 (400)
T PF03825_consen 390 LFVILFKPK 398 (400)
T ss_pred HHHhhccCC
Confidence 33 444443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=98.96 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=99.5
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMG 142 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~ 142 (474)
+++.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++.|+|.+
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~ 334 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG 334 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 4556776665555555555778889999999999999999999999999888887777653 67777778889999999
Q ss_pred hhhhhhhhhhhhcCCCC-------cchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 143 LLSYVVPVYIAEITPKN-------LRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 143 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
...+...++.+|..|.+ ++|...+..+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888754 348999999999999999988877654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=99.34 Aligned_cols=155 Identities=13% Similarity=0.026 Sum_probs=100.1
Q ss_pred HhcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccch
Q 011956 292 AFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
....+.+.++.+.+. ++......++..++.+..|+++||+|||+.+.........+.. .... ..+
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~-----------~~~ 78 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD-----------PFN 78 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH-----------hcc
Confidence 334445444444443 3666777788899999999999999988865433332222211 1111 123
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHH
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLT 447 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~ 447 (474)
...+...-++.+..... .........|.+|+++|+++.++.+....+|..+++.+.+.+.+ .++...+.+.+.+..+.
T Consensus 79 ~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 79 YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 33444443444433332 33444566888999999999999999999999999999999887 45444555556666666
Q ss_pred HHhhheeCcCCC
Q 011956 448 VLFVAKLVPETK 459 (474)
Q Consensus 448 ~~~~~~~~~~~~ 459 (474)
.++.++..||.+
T Consensus 158 ~~~~~~~lp~~p 169 (368)
T TIGR00903 158 IILVLAALPALP 169 (368)
T ss_pred HHHHHHHcCCCC
Confidence 666666677654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=96.13 Aligned_cols=176 Identities=13% Similarity=0.112 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 011956 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (474)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 114 (474)
++...+.+.+.++.-..+.+.. ...-..+-++-|++..+..+..........+..+++..+.||+|||+.++.+..+.
T Consensus 268 R~~~~i~~~v~~~qq~sGi~ai--~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINAI--FFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM 345 (485)
T ss_pred hHHHHHHHHHHHHHHhcCccee--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3334444445455444443332 22233577888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh---hHH---H---HHHHHHHHHhhhhh-hhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHH----H
Q 011956 115 IIGWVIIVFSK---AAW---W---LDLGRLLVGYGMGL-LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT----Y 180 (474)
Q Consensus 115 ~~~~~~~~~~~---~~~---~---l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~----~ 180 (474)
.+..++..... +.. . .+++.++..++.+. .-|...-+.+|.+|++.|+.++++.....-+...+- |
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888776532 111 1 22333333333322 357888899999999999999998888777776554 3
Q ss_pred HHhccchhhHHHHHhHHHHHH-HHHHhhccCCCh
Q 011956 181 LIGAFLNWRILALIGTIPCLV-QLIGLCFIPESP 213 (474)
Q Consensus 181 ~l~~~l~wr~~f~~~~~~~~~-~~~~~~~~~~~p 213 (474)
++...+|= +.|++..+++++ .+..+..+||+.
T Consensus 426 ~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 426 PLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 44444443 667777777666 455667799984
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=100.86 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=95.5
Q ss_pred cccccccccCCChhhHHHHHHHHH-HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh-----------hhHH
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILT-IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-----------KAAW 128 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~ 128 (474)
..|...+++|.+.++.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+. ++.+
T Consensus 231 ~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (356)
T TIGR00901 231 LTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL 310 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 344455569999999999888766 6788999999999999999999998888888777665543 4567
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHH
Q 011956 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC 173 (474)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 173 (474)
.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 311 MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 788889999999999999999999999999999999999887654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-09 Score=98.89 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=121.3
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhh
Q 011956 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYV 147 (474)
Q Consensus 68 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 147 (474)
+-+.++..+|.+.+..-+.-++...+..++.+|+|.|+.++++..++++=-.++++++|.+.+.+.+.+.|+-.+.....
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva 332 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA 332 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33445567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCcchhHHHH-HHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHH-HhhccCCCh
Q 011956 148 VPVYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI-GLCFIPESP 213 (474)
Q Consensus 148 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~-~~~~~~~~p 213 (474)
...++++.+|+|..++...+ .+.+.++|.++.+.+++.+ |.+..|++.+.+.++..+ ..+.+++++
T Consensus 333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 99999999998877777776 4678889999888888887 889999988887766444 445565543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=114.02 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=112.5
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh--------------------
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-------------------- 124 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------------------- 124 (474)
+.+.+|.+..+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 252 ~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (1140)
T PRK06814 252 AKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSK 331 (1140)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcc
Confidence 455689999999999999999999999999999999888877777776666666555443
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHH
Q 011956 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIP 198 (474)
Q Consensus 125 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~ 198 (474)
++.+.+++..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.+.+ ++...+++.+..
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 67788888899999999999999999999999999999999999999999999999887766 455555554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.1e-07 Score=82.74 Aligned_cols=339 Identities=16% Similarity=0.040 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH------Hhh------hHHHH---HHHHHHHHhh
Q 011956 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV------FSK------AAWWL---DLGRLLVGYG 140 (474)
Q Consensus 76 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~------~~~------~~~~l---~~~r~l~G~~ 140 (474)
.+...-.-.+...++++..|.+.||..|.+++..+.+.--++-.+++ +.. +-+.. ++.-.+.|.-
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i 119 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI 119 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence 33334445566788889999999999999998777665433322221 111 11222 2222222221
Q ss_pred hhhh-hhhhhhhhhhcC------CCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh-hc
Q 011956 141 MGLL-SYVVPVYIAEIT------PKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CF 208 (474)
Q Consensus 141 ~~~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~-~~ 208 (474)
+-.. .....++=.||. +++.+.+.++...-.--+.-+++|++.+.+ +.+....+.+...++....= ++
T Consensus 120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111222224443 234457777777777778888888888777 56666666666666544322 11
Q ss_pred ----cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHh
Q 011956 209 ----IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284 (474)
Q Consensus 209 ----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (474)
....|+ +..+++.++........ .. ..........+.....-+....+|+..++.+.+...+- ..+.++..
T Consensus 200 l~~VY~~~P~-L~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~a-lalLY~TV 274 (432)
T PF06963_consen 200 LARVYNSVPA-LAVKKRSSESESSSDEE--SS-SESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFA-LALLYFTV 274 (432)
T ss_pred HHHHHHhChH-hcCCCCCcccccccccc--cc-ccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHH-HHHHHHHH
Confidence 122332 22222111110000000 00 00000001111111111222455666776665544433 33333333
Q ss_pred hccchhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccc
Q 011956 285 FGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQ 361 (474)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (474)
.++-..... +....|.+.. ..-....+.++.+.++.+++.+|+|..+.=..+......+..+.....+....+
T Consensus 275 Lsf~~lmt~----yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~ 350 (432)
T PF06963_consen 275 LSFGGLMTA----YLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP 350 (432)
T ss_pred hcCcHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 333333333 3344566655 455556677888899999999999988777776666555554444433322211
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011956 362 QWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 425 (474)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 425 (474)
. ...+...++......=.+-.++--...-+++|..|+++||+.+|+-+..+++...+.-.+.
T Consensus 351 ~--~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 351 F--SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred c--hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0112222222233333333344444567889999999999999999999998886654443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=93.42 Aligned_cols=127 Identities=22% Similarity=0.285 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh--hHH--HHHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Q 011956 83 LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAW--WLDLGRLLVGYGMGLLSYVVPVYIAEITPK 158 (474)
Q Consensus 83 ~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 158 (474)
..+.-.-|.++.+++.||+|||+.+..+.+++++..++..... |.. +++.+|++. .+.+.+.+.|..|.+|.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPT 465 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccch
Confidence 3456678899999999999999999999999999988876654 322 234456554 44577789999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhccc--hhhHHHHHhHHHHHHHHHHhhccCCCh
Q 011956 159 NLRGGFTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPCLVQLIGLCFIPESP 213 (474)
Q Consensus 159 ~~r~~~~~~~~~~~~~g~~~~~~l~~~l--~wr~~f~~~~~~~~~~~~~~~~~~~~p 213 (474)
+-|+...|.-....-+|.++.|+++-.. .-..+..+.+...+++.+...++|-.+
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999999999998332 334455666777777777777777544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=95.68 Aligned_cols=129 Identities=12% Similarity=-0.050 Sum_probs=95.2
Q ss_pred hcHHHHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchH
Q 011956 293 FYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPF 369 (474)
Q Consensus 293 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (474)
...+.+.++.+.+. +.......++..++.+..|++.||+|||+.+..+..+.+++.++...... ..++
T Consensus 24 ~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---------~~~~ 94 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---------IMNY 94 (410)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---------hccH
Confidence 34455444445443 47788888999999999999999999999999999988888776543211 1234
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 370 LALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
..+....++.+.......+....++.+..|++++++..++.+...++|..++|.+.+.+..
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444544445555556788888898999999999999999999999999988753
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.5e-09 Score=87.07 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=99.4
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHhhhh
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII-GWVIIVFSKAAWWLDLGRLLVGYGMG 142 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~~ 142 (474)
..++.||+|+...+.+.+.-..-.++.+++.|.++||+|++...+.+..+..+ +-....+ +++.=+.+..+.|+...
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 46899999999999999999999999999999999999999877665544433 3333333 23333467788899888
Q ss_pred hhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
.........++...|+++.|++.+..+...++|..+-|++++.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 77666778888889999999999999999999999999999988
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=96.75 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=120.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhc
Q 011956 305 SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSL 384 (474)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (474)
..++++...++..++.+++.|.+.||+|+|..+.+|..++....+++.+ ...+...++.=..-+....
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf------------g~sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF------------GNSYPMLFVARSLQGVGSA 174 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH------------cchhHHHHHHHHHhhhhHH
Confidence 3458888999999999999999999999999999999999999988887 4555566666566666666
Q ss_pred cccchhhhhhcccCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHHHHhhheeCcCCCC
Q 011956 385 GMGGIPWVIMSEVFPINM-KGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPETKG 460 (474)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (474)
+......++++|.+|+++ |+.++|+.-.+..+|-.+||+++|.++| .|...+|.++++++++-..+.++.++.++.
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 666677799999999765 6999999999999999999999999999 677788888888888877777666655443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=92.31 Aligned_cols=149 Identities=27% Similarity=0.410 Sum_probs=121.6
Q ss_pred cccccccccccccccccCCCh--hhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhh--HH
Q 011956 53 SAIGYSSPAQSGITNDLGLSV--AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA--AW 128 (474)
Q Consensus 53 ~~~~~~~~~~~~i~~~~~~s~--~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~ 128 (474)
.+.....+..+.+.++++.+. .+.++..+.+.++..+++++.|.++||+|||+.+..+.....++.+++++..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 444444556666777777666 58999999999999999999999999999998888888776666777777776 89
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCC-CcchhHHHHHHH-HHHHHHHHHHHHhccc------hhhHHHHHhHHHHH
Q 011956 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPK-NLRGGFTTVHQL-MICIGVSMTYLIGAFL------NWRILALIGTIPCL 200 (474)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~l~~~l------~wr~~f~~~~~~~~ 200 (474)
.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+ +||+.|.+......
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999987 678888888888 5778888888776554 68886666555554
Q ss_pred H
Q 011956 201 V 201 (474)
Q Consensus 201 ~ 201 (474)
.
T Consensus 176 ~ 176 (338)
T COG0477 176 L 176 (338)
T ss_pred H
Confidence 3
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-09 Score=95.07 Aligned_cols=111 Identities=27% Similarity=0.274 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
++....+.+...+.++..|.++||+|||.++.++.+..++..++.+. ..+...++..=+..|.+. +.
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------------S~~F~afv~aR~l~Gi~k-gn 137 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------------SRNFAAFVLARFLGGIFK-GN 137 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhhhcc-Cc
Confidence 47788888999999999999999999999999988888887776665 345533333344555554 44
Q ss_pred cchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 387 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
.++..++++|++++++|+.+++.+++...+|.++||.++|++..
T Consensus 138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 55667999999999999999999999999999999999999987
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=100.73 Aligned_cols=127 Identities=9% Similarity=0.018 Sum_probs=98.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcc-cccc-------------------
Q 011956 304 FSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQD-LQQW------------------- 363 (474)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------- 363 (474)
.+.+++.....++..++.++.+++.||.+||+.+.++.++.+++.++..+...... ....
T Consensus 68 ~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~ 147 (633)
T TIGR00805 68 SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCME 147 (633)
T ss_pred CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccC
Confidence 34457778888999999999999999999999999999999999988876532110 0000
Q ss_pred -----------------cc--cchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011956 364 -----------------IK--ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFT 424 (474)
Q Consensus 364 -----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 424 (474)
.. ...+..+++.-++.+.+.....+...+++.|.+|+++|+...|+.+....+|..+|+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~ll 227 (633)
T TIGR00805 148 NLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLL 227 (633)
T ss_pred CCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHH
Confidence 00 01233444556666666667778888999999999999999999999999999999999
Q ss_pred HHHHHh
Q 011956 425 FNFLMK 430 (474)
Q Consensus 425 ~g~~~~ 430 (474)
.+.+.+
T Consensus 228 gg~l~~ 233 (633)
T TIGR00805 228 GSFCLQ 233 (633)
T ss_pred HHHHHh
Confidence 998875
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=95.92 Aligned_cols=124 Identities=19% Similarity=0.349 Sum_probs=106.3
Q ss_pred ccccccc-cCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHH
Q 011956 62 QSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVG 138 (474)
Q Consensus 62 ~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G 138 (474)
.+.+.++ ++. ++..+.+..+..++..++.+++++++||+|+|+++..+..+.+++.++..+.+ |.+.+++.-++.|
T Consensus 248 ~~y~~~~vl~~-~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 326 (428)
T PF13347_consen 248 LPYYFTYVLGN-EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAG 326 (428)
T ss_pred HHHHHHHHhcC-chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 3334433 453 36788888999999999999999999999999999999999999999988886 9999999999999
Q ss_pred hhhhhhhhhhhhhhhhcCCCC-------cchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 139 YGMGLLSYVVPVYIAEITPKN-------LRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
++.+...+...++++|..+.+ +.|..++..+....+|..+++.+.+.+
T Consensus 327 i~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 327 IGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred hhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999988732 238889999999889988888776654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-08 Score=93.05 Aligned_cols=122 Identities=10% Similarity=0.130 Sum_probs=95.4
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-----SKAAWWLDLGRLLVGY 139 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~ 139 (474)
+.+...-+.+..+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|+
T Consensus 257 ~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~ 336 (473)
T PRK10429 257 YFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNI 336 (473)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44433335667778888888999999999999999999999999888877766655432 3456777778888999
Q ss_pred hhhhhhhhhhhhhhhcCCC-------CcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 140 GMGLLSYVVPVYIAEITPK-------NLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
+.+...+...++++|..+. ++.|..++......-+|..+++.+.+.+
T Consensus 337 ~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 337 GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998652 2236788999988888988888777655
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-08 Score=89.88 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=113.7
Q ss_pred hhhHhcHHHHHHHcCCc----chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccccc
Q 011956 289 NGIAFYASSIFISAGFS----GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWI 364 (474)
Q Consensus 289 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (474)
...++-.+.+.+..+.+ .+.....+..+..+..+.+|+++||+|.|+.+..+.+.-.+..++..+.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---------- 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---------- 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----------
Confidence 34455555555555543 3467788888999999999999999999999998888888888877763
Q ss_pred ccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cchhHHHHH
Q 011956 365 KATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS--TGTFFAFSA 442 (474)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~--~~~~~~~~~ 442 (474)
.+...+.+.-++.|.+..... ....++.+.+|+++|+++.|+.+....+|.++++++.+.+...++ +.....+..
T Consensus 113 --~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl 189 (511)
T TIGR00806 113 --TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISL 189 (511)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 345555566566666665555 777999999999999999999999999999999999999554332 222333444
Q ss_pred HHHHHHHhhheeCcC
Q 011956 443 ICSLTVLFVAKLVPE 457 (474)
Q Consensus 443 ~~~~~~~~~~~~~~~ 457 (474)
.....+.+..+++|.
T Consensus 190 ~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 190 VFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHHHHHhCCC
Confidence 444455555556654
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=96.17 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=101.7
Q ss_pred chhhHhcHHHHHHHcCCcchhHHHHHHHH--HHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccc
Q 011956 288 VNGIAFYASSIFISAGFSGSIGMIAMVVI--QIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIK 365 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (474)
.+....+.+.+.+..+.+.........++ .....+..|++.||+|+|+++.++.++..++.++..+.....-
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i------ 116 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI------ 116 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc------
Confidence 44556677777666666655322222222 2234457899999999999999999999999888776421100
Q ss_pred cchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 011956 366 ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICS 445 (474)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~ 445 (474)
..+.+.+.+..++.+.......+.....+.+.+| ++||.+.|+......+|+++.+.+...+...+....+++.+.+..
T Consensus 117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~ 195 (591)
T PTZ00207 117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFAL 195 (591)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1233333333334444443344445567778887 789999999999999999875555544444334455666666666
Q ss_pred HHHHhhheeCcC
Q 011956 446 LTVLFVAKLVPE 457 (474)
Q Consensus 446 ~~~~~~~~~~~~ 457 (474)
+.+++.+.+++.
T Consensus 196 vv~ll~~~~vr~ 207 (591)
T PTZ00207 196 VVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHhheeC
Confidence 665555554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-08 Score=94.08 Aligned_cols=132 Identities=10% Similarity=0.011 Sum_probs=103.4
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhh
Q 011956 66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLS 145 (474)
Q Consensus 66 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 145 (474)
++.+|.++.+.++..+.+.++..++.++.|++.||+|+|+++..+.++.++..++..+.++.+ .+..-.+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999888877777666666543 2456678999999999
Q ss_pred hhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----h-hhHHHHHhHHHHH
Q 011956 146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCL 200 (474)
Q Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~-wr~~f~~~~~~~~ 200 (474)
|...+...+.++++ .+.+.++..... +|..++|++.+.+ | -|..|++..+..+
T Consensus 366 P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 366 PTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred HHHHHHHHcccchh-hccchhHHhHHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999998754 567777776433 5666666666665 4 5666665444333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-05 Score=76.07 Aligned_cols=123 Identities=7% Similarity=0.070 Sum_probs=93.5
Q ss_pred ccccccCC-----ChhhHHHHHHHHHHHHHHH-HHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh----h--------
Q 011956 64 GITNDLGL-----SVAEYSLFGSILTIGAMIG-AIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS----K-------- 125 (474)
Q Consensus 64 ~i~~~~~~-----s~~~~g~~~s~~~l~~~~~-~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~-------- 125 (474)
.+.|.+.+ +.+.+.++-+...+...+. .++.+++++|++|++++-+....+.....++++. +
T Consensus 28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~ 107 (472)
T TIGR00769 28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL 107 (472)
T ss_pred hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence 35666655 3467999999888877777 8999999999999999988888777777776654 1
Q ss_pred -------------------hHHHHHHHHHHHHhhhhhhhh-hhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 011956 126 -------------------AAWWLDLGRLLVGYGMGLLSY-VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF 185 (474)
Q Consensus 126 -------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 185 (474)
+.|...+.-....+-...... .-.+++.|.++.+|-.|..++.+.+.++|.++++.+..+
T Consensus 108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333333444444444554 678889999999999999999999999999999988766
Q ss_pred c
Q 011956 186 L 186 (474)
Q Consensus 186 l 186 (474)
+
T Consensus 188 ~ 188 (472)
T TIGR00769 188 F 188 (472)
T ss_pred H
Confidence 5
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-07 Score=84.68 Aligned_cols=322 Identities=13% Similarity=0.065 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 011956 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEI 155 (474)
Q Consensus 76 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (474)
.+.+.-+-.+...+.-+.+-+..+|+..+.=..++..++.++.++.++++|.+.=+++-.+.+++.|........+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 445555666677777778888899988766666777788889999999999999999999999999998888888744 5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHHHHHHHhh-ccCCChhHHHhcCChhHHHHHH
Q 011956 156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLC-FIPESPRWLAKTGKGIESEAAL 229 (474)
Q Consensus 156 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~ 229 (474)
+++ ...+-+..|.+.+.++|+..-..+ +-|..+++..++.++..+..+ .+|+++... ..++.++..+.
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~-~~~~~~~~~~~- 213 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNR-PYQESESEDEA- 213 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccC-CCcccCCCCcc-
Confidence 553 346777777777777776554333 446777776666555444443 444332111 11110000000
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhH--hhHHHHHHHHHHHHHHhhccchhhHhcHHHH-HHHcCCcc
Q 011956 230 QRLRGADADISEEAAEIREYTETLERLSEGGILELFQR--KYAHSLIVGVGLMVLQQFGGVNGIAFYASSI-FISAGFSG 306 (474)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 306 (474)
++ +..++ +....+.+...+.++++-++. +..+ .++-.++.++.++.....+ .+.. +.....+.
T Consensus 214 ---~~---~~~~~----~~~~~~~~~~~~~~~~~k~~~~k~Ll~-ymiPL~lVY~aEY~InqGv---~~tl~fp~~~~~~ 279 (402)
T PF02487_consen 214 ---ED---DLLES----ETSESKPDSSSKLSFKEKLKRLKPLLW-YMIPLFLVYFAEYFINQGV---APTLLFPNSFFSP 279 (402)
T ss_pred ---cc---ccccc----ccccccccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhch---HHHhcCCccCCCH
Confidence 00 00000 000000001111222222211 1122 3333333333332211111 1111 11111111
Q ss_pred h----hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHH
Q 011956 307 S----IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSF 382 (474)
Q Consensus 307 ~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (474)
. +....+.++.++++--...+ |+ |++.+. .++..+-++.+.+-.+..- .++.+.++.+++.-|..
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwil-s~LQ~~nl~~~~l~s~~~f------ipsi~ivf~lif~eGLl 348 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWIL-SLLQVINLVFLLLQSWYRF------IPSIWIVFVLIFYEGLL 348 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHH-HHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHh
Confidence 1 45555566655554322111 22 332222 2222222222211111100 23344555555566666
Q ss_pred hccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 383 SLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 383 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
++......+..+.|..|+++|..++|........|..++..+.-.+.
T Consensus 349 GGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 349 GGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 65555555667777788899999999999999998888877764443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=89.71 Aligned_cols=151 Identities=14% Similarity=0.078 Sum_probs=109.3
Q ss_pred HHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHH
Q 011956 296 SSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLAL 372 (474)
Q Consensus 296 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (474)
+.+-++.+.+.+ ++..+..+.+.+.++..|.+.||+|.|+....+.++..+-++.+.+... ..+.+.+
T Consensus 38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~---------~~~~~~l 108 (417)
T COG2223 38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT---------YPSTWQL 108 (417)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc---------CCchHHH
Confidence 333344455554 6777777888899999999999999999999988888888888777532 1222344
Q ss_pred HHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hh---ccchhHHHHHHHHHHH
Q 011956 373 VGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WS---STGTFFAFSAICSLTV 448 (474)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-~~---~~~~~~~~~~~~~~~~ 448 (474)
+.+.++.+.. ++.+.+...++++.+|++++|.+.|+.. .+|+|..+...+.+.+.. .+ ++....+.....++..
T Consensus 109 l~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~ 186 (417)
T COG2223 109 LVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA 186 (417)
T ss_pred HHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444444433 4556667799999999999999999999 999999999999888887 33 4455556666666656
Q ss_pred HhhheeCcC
Q 011956 449 LFVAKLVPE 457 (474)
Q Consensus 449 ~~~~~~~~~ 457 (474)
+..++..++
T Consensus 187 v~~~~~~~d 195 (417)
T COG2223 187 VLAWLGMND 195 (417)
T ss_pred HHHHHHhCC
Confidence 666665543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.5e-07 Score=87.10 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=118.0
Q ss_pred ccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHhhhH---------
Q 011956 58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSKAA--------- 127 (474)
Q Consensus 58 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~--------- 127 (474)
....+..+.++++.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++..++..+..++...
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 45566678899999888888889999989999999999999975 99999999999988886655443211
Q ss_pred ----------------HHHHHHHHHHHhhhhhhhhhhhhhhhhcCC---CCcc---hhHHHHHHHHHHHHHHHHHHHhcc
Q 011956 128 ----------------WWLDLGRLLVGYGMGLLSYVVPVYIAEITP---KNLR---GGFTTVHQLMICIGVSMTYLIGAF 185 (474)
Q Consensus 128 ----------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~r---~~~~~~~~~~~~~g~~~~~~l~~~ 185 (474)
..++.+.-+..+|.|+.-|+..+.-+|-++ ++++ ...+.++....+.|..++..+-.+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 245666778888999999999999999998 3222 467888888899999888877666
Q ss_pred c----hhhHHHHHhHHHHHHHHHHh
Q 011956 186 L----NWRILALIGTIPCLVQLIGL 206 (474)
Q Consensus 186 l----~wr~~f~~~~~~~~~~~~~~ 206 (474)
. +|.+.|.+..+..+++++++
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHHH
Confidence 5 89999988877766655444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=4e-08 Score=94.93 Aligned_cols=168 Identities=15% Similarity=0.136 Sum_probs=103.9
Q ss_pred HhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch--hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhH
Q 011956 267 RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS--IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGT 344 (474)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 344 (474)
++.+...+....+.....+........-++.+..+.|.+.. +......++..++.++.|+++|.+|||+.++.+.++.
T Consensus 39 s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 39 SPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 34444444334443333322232223334455555555443 6777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011956 345 CLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFT 424 (474)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 424 (474)
.++.+..... ++...++....+.+.. .+........++|..|.+.|+.+.++.....-....++|.+
T Consensus 119 vvG~Iv~atA------------~~~~~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~i 185 (599)
T PF06609_consen 119 VVGSIVCATA------------QNMNTFIAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLI 185 (599)
T ss_pred HhHHHHhhcC------------CcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHH
Confidence 9998888763 3444444444443333 23333445678999999999988877766555555566777
Q ss_pred HHHHHh-hhccchhHHHHHHHHHH
Q 011956 425 FNFLMK-WSSTGTFFAFSAICSLT 447 (474)
Q Consensus 425 ~g~~~~-~~~~~~~~~~~~~~~~~ 447 (474)
...+.. .++.+.+++..+...+.
T Consensus 186 a~~~~~~~~WRw~~~~~~i~~~i~ 209 (599)
T PF06609_consen 186 AQLFAAHSGWRWIFYIFIIWSGIA 209 (599)
T ss_pred HHHhccCCCcchHHHHHHHHHHHH
Confidence 665554 34444454444443333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.6e-08 Score=92.21 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=117.6
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHH
Q 011956 66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS----------KAAWWLDLGRL 135 (474)
Q Consensus 66 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~ 135 (474)
.+.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+..+..-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 45789999999999999999999999999999999999999999999999887654311 34445556678
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----h-----hhHHHHH---hHHHHHHHH
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-----WRILALI---GTIPCLVQL 203 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~-----wr~~f~~---~~~~~~~~~ 203 (474)
+.+++.+..+.....++.+..|+++++...++.++..++|..+++.+++.+ | ++..+.. ..+..++.+
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776 3 3333322 333334444
Q ss_pred HHhhccCC
Q 011956 204 IGLCFIPE 211 (474)
Q Consensus 204 ~~~~~~~~ 211 (474)
....++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 44457785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.1e-07 Score=86.13 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 011956 73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF--SKAAWWLDLGRLLVGYGMGLLSYVVPV 150 (474)
Q Consensus 73 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~ 150 (474)
++..+.+.....+...++.+++++++||+|+|+.+..+.++.++......+ .++.+.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777888899999999999999999999888776654443333 357777888889999999999999999
Q ss_pred hhhhcCCCC-------cchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 151 YIAEITPKN-------LRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 151 ~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
+++|..+.+ +.|...+..+....+|..+|+.+++.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988622 236778888888889999988887765
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=81.17 Aligned_cols=171 Identities=17% Similarity=0.152 Sum_probs=110.7
Q ss_pred HHHHHhhccchhhHhcHHHHHHHcCCcchhHH---HHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHh
Q 011956 279 LMVLQQFGGVNGIAFYASSIFISAGFSGSIGM---IAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (474)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (474)
.......+..+..+.|.+++.+..+.+..... ....++..+ ++..|.+.|++|.+.++.++.+...++...+....
T Consensus 9 ~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 9 IWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred HHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455678889999999888888776333 333455554 47889999999999999999999999988776654
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHhcc-ccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011956 356 LFQDLQQWIKATPFLALVGVLVYTGSFSLG-MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSST 434 (474)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~ 434 (474)
...- ...+.+.+ ....+.++.+.+ ..........+.+| ++||++.|+.-....+++.+-..+...+.+.+..
T Consensus 88 ~~~i-----~~~~~~~~-~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 88 SGRI-----PSLPVWLM-CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred hCcc-----CccchHHH-HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 2211 01233333 333333333322 23343455567788 6899999999999999999988888777765444
Q ss_pred chhHHHHHHHHHHHHhhheeCcC
Q 011956 435 GTFFAFSAICSLTVLFVAKLVPE 457 (474)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
......+....+..++..++.|.
T Consensus 161 ~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhheec
Confidence 44444555444444444444443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-08 Score=68.30 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=70.0
Q ss_pred cccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011956 57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD 131 (474)
Q Consensus 57 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 131 (474)
.+.|.+|.+++|.++|.++.|++.+.+++||.+|.+...++.++..+++.+..+.+...+..+.+++.++++.+.
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 348999999999999999999999999999999999999999998889999999999999999999998887653
|
Note that many members are hypothetical proteins. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5e-07 Score=76.18 Aligned_cols=312 Identities=14% Similarity=0.086 Sum_probs=165.3
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 011956 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG 138 (474)
Q Consensus 59 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (474)
+|..-.+-+.++....|+|.+.-+.+-...+...+.|.++|+-|||+.-+.-++.+.+++ ++-.++.|-.++++|.+-|
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhh
Confidence 566566778889999999998888888888999999999999999997655444444432 2345789999999999999
Q ss_pred hhhhhhhhhhhhhh-hhcCCCCcchhHHHHHH--------HHHHHHHHHHHHHhccc------hhhHHHHHhHHHHHHHH
Q 011956 139 YGMGLLSYVVPVYI-AEITPKNLRGGFTTVHQ--------LMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQL 203 (474)
Q Consensus 139 ~~~~~~~~~~~~~i-~~~~~~~~r~~~~~~~~--------~~~~~g~~~~~~l~~~l------~wr~~f~~~~~~~~~~~ 203 (474)
+..+..+.+-.++. .|.-+ +|+.-.-+.. .+..+-.+++.+.+..+ |--.+|-..+.+..++.
T Consensus 136 iaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm 213 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM 213 (454)
T ss_pred HHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 99999888876654 44432 2322111111 12223334444444433 44456655444433322
Q ss_pred -HHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHH
Q 011956 204 -IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL 282 (474)
Q Consensus 204 -~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (474)
+..--.-|+ -++..+.++.+.. -+...+.+.+++ +..+...+...
T Consensus 214 Avil~~W~EN------ygdps~~kdlltq-------------------------f~gaa~aiaSD~---ki~LLG~iqsL 259 (454)
T KOG4332|consen 214 AVILSSWSEN------YGDPSENKDLLTQ-------------------------FKGAARAIASDE---KIALLGAIQSL 259 (454)
T ss_pred HHHHhhhhhc------cCChhhhHHHHHH-------------------------hhHhHHHHhcch---HHHHHHHHHHH
Confidence 222111121 1111111111110 011111122222 12222333333
Q ss_pred HhhccchhhHhcHHHHH-HHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc--ceeeehhhhHHHHHHHHHHHhhhcc
Q 011956 283 QQFGGVNGIAFYASSIF-ISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR--PLLLVSAAGTCLGCLLAALSFLFQD 359 (474)
Q Consensus 283 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (474)
.....+...-.|.|.+- +..+..-+..+..+....++|+-+..++..|-..| ..+.+.+.+.++.+.+........+
T Consensus 260 FE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP 339 (454)
T KOG4332|consen 260 FEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSP 339 (454)
T ss_pred HhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33333444444444332 12344456788888888888887776666554332 3344444444444433333222111
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHH
Q 011956 360 LQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTL 412 (474)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 412 (474)
. . ......++.++.+- ...+.+.|..+-.-.+..|++.|++.+-++..
T Consensus 340 ~---k-es~~~s~i~F~~~E-~cvGlfwPSimkmRsqyIPEearstimNfFRv 387 (454)
T KOG4332|consen 340 S---K-ESPSESLIGFCLFE-ACVGLFWPSIMKMRSQYIPEEARSTIMNFFRV 387 (454)
T ss_pred C---c-CCchHHHHHHHHHH-HHHhhcchHHHHHHHhhCCHHHHhhhhhheec
Confidence 1 1 22222333333333 33345667766777888898888776554433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.2e-06 Score=73.37 Aligned_cols=350 Identities=13% Similarity=0.033 Sum_probs=176.3
Q ss_pred HHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhh-----ccCchhHHH-HHHHHHHHH
Q 011956 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-----YIGRRGTMG-FSDIVCIIG 117 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~l~-~~~~~~~~~ 117 (474)
+.+.....+.-.+... .+|.+-+.-|.|.++.+...-++ . -.-.-+.|.++.| |+||||.-+ -+..+.+..
T Consensus 36 Ll~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~-P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~ 112 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-W-PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLF 112 (510)
T ss_pred HHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-h-HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHH
Confidence 3444566777777777 78888888888888776543332 2 2234678899999 999988643 333333333
Q ss_pred HHHHHH-----------hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 118 WVIIVF-----------SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 118 ~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
..+.+. .+|...+...-++.-+..+.--.+.-.+.-.+..+++-|.+......+...|..++..+--.+
T Consensus 113 mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 113 MLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLAL 192 (510)
T ss_pred HHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEe
Confidence 333332 123333333445566666666667777777788888889888888888888888776554333
Q ss_pred -----------hhh---------HHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHH
Q 011956 187 -----------NWR---------ILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEI 246 (474)
Q Consensus 187 -----------~wr---------~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (474)
+|. .-.++.+...++.-....+..+++.... .+|
T Consensus 193 ~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~----~~e---------------------- 246 (510)
T KOG3574|consen 193 ESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESV----DEE---------------------- 246 (510)
T ss_pred cChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhh----hhh----------------------
Confidence 222 1122333333333333333333221000 000
Q ss_pred HHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHH
Q 011956 247 REYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVL 326 (474)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 326 (474)
.+...+..-.-++++++-+..+.........-..+...-.. .+..+.+.|....-+... .+..++..++.++
T Consensus 247 ---~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~----t~LkLle~Gv~ke~Lal~-~v~~~plqI~l~~ 318 (510)
T KOG3574|consen 247 ---LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADAL----TSLKLLEHGVPKEELALI-AVPLVPLQIALPL 318 (510)
T ss_pred ---hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhc----cchHHHHcCCChhHheee-eeehhhHHHhhhh
Confidence 00000001112344555455444443333333322221111 222233445444322111 1444444455555
Q ss_pred HHhhcCC--ccee------eehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccC
Q 011956 327 LMDKSGR--RPLL------LVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVF 398 (474)
Q Consensus 327 l~d~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (474)
...|+.. |++. ..-.....+...+......................+....+...+....+...++..+++.
T Consensus 319 ~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqis 398 (510)
T KOG3574|consen 319 YIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQIS 398 (510)
T ss_pred hheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC
Confidence 5444422 2111 1111111122222222111111000000112222233344444444444445568889999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 399 PINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 399 p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
||...|+.+.+.|+..++|+-.-..+...+.|
T Consensus 399 dp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 399 DPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred CcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 99999999999999999999887778877766
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=4e-07 Score=86.72 Aligned_cols=168 Identities=13% Similarity=0.070 Sum_probs=96.6
Q ss_pred HhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHh----hcCCcceeeeh-hhhHHHHHHHHHHHhhhccc---
Q 011956 292 AFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMD----KSGRRPLLLVS-AAGTCLGCLLAALSFLFQDL--- 360 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--- 360 (474)
..+.+.+++..+.+.. .......+.+++..++.|+++| |+|||+..+.. .....++..++.+.......
T Consensus 24 ~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~ 103 (477)
T TIGR01301 24 LSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD 103 (477)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence 3344445555566554 5666677788888999999999 59999988764 44444444444432110000
Q ss_pred ccccccchH--HHHHHHHHHHHHHhccccchhhhhhcccCCCCch--hhHHHHHHHHHHHHHHHHHHHHHHHH--hh---
Q 011956 361 QQWIKATPF--LALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMK--GSAGSLVTLVSWLGSWIISFTFNFLM--KW--- 431 (474)
Q Consensus 361 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~i~~~i~g~~~--~~--- 431 (474)
......... +..+....+.-.......+...+++.|..|+++| +.+.++.+...++|+.+++.+.+... +.
T Consensus 104 ~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~ 183 (477)
T TIGR01301 104 NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPF 183 (477)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence 000000111 1111111122222223344456899999998765 67999999999999999999988652 11
Q ss_pred -----------hccchhHHHHHHHHHHHHhhheeCcCCC
Q 011956 432 -----------SSTGTFFAFSAICSLTVLFVAKLVPETK 459 (474)
Q Consensus 432 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (474)
+....|.+-+++..+...+..+..||..
T Consensus 184 ~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 184 TKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 1122344444445555556666677754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-06 Score=76.12 Aligned_cols=167 Identities=17% Similarity=0.137 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHH
Q 011956 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCI 115 (474)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~ 115 (474)
.|.+.....+-++.+.... .-+|.+-.|-|+|..+.|++.+...+.....++..-.+++|. ++|+..+....++.
T Consensus 210 aW~vtLfmGlqS~~~Y~~~----~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l 285 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVI----GWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLML 285 (395)
T ss_pred hHHHHHHHHhhHHHHHHHH----HHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3444444444444432222 346778999999999999999999999999999999999965 67788888888888
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHhccc-----hhh
Q 011956 116 IGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLR-GGFTTVHQLMICIGVSMTYLIGAFL-----NWR 189 (474)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr 189 (474)
++...+.+.+.-..++. -++.|+|.|..++.+...+.+..++.++ ++..++.+....+=..+||.+.+++ +|+
T Consensus 286 ~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~ 364 (395)
T COG2807 286 VGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWS 364 (395)
T ss_pred HHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChH
Confidence 88888877765443333 4899999999999999999988876554 6777777777777778899999988 899
Q ss_pred HHHHHhHHHHHHHHHHhhc
Q 011956 190 ILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 190 ~~f~~~~~~~~~~~~~~~~ 208 (474)
.+.+..+...++..+.-+.
T Consensus 365 ~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 365 APLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9888877776665554433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-06 Score=78.65 Aligned_cols=144 Identities=18% Similarity=0.355 Sum_probs=119.9
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhh-ccCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHH
Q 011956 63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-YIGRRGTMGFSDIVCIIGWVIIVF---SKAAWWLDLGRLLVG 138 (474)
Q Consensus 63 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G 138 (474)
|+=.+-||++..|...++..+..|..++....|++.. |.++|+.-.+|+....++..+..+ ..+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3455679999999999999999999999999999877 678888888888887777666444 457888999999999
Q ss_pred hhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc--------------hhhHHHHHhHHHHHHHHH
Q 011956 139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l--------------~wr~~f~~~~~~~~~~~~ 204 (474)
++.|.......+...|..++++.|..+|.+.....++..++..+++.+ +|-.+|.+.++..++++.
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999899999999999988888888887665 466677776666655544
Q ss_pred Hh
Q 011956 205 GL 206 (474)
Q Consensus 205 ~~ 206 (474)
+.
T Consensus 393 ll 394 (403)
T PF03209_consen 393 LL 394 (403)
T ss_pred HH
Confidence 43
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=92.36 Aligned_cols=137 Identities=21% Similarity=0.263 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
.+......++.++|.++.|.++||+|||+++..+..+..++.+...+ ..++....++=++.+.+..+.
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~------------a~~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF------------APNYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH------------hCcHHHHHHHHHHHHhhccch
Confidence 36778888999999999999999999999999999999888877776 567777888888888888888
Q ss_pred cchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhhheeCcCC
Q 011956 387 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPET 458 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
..+.+.+..|..++++|+.+..+ ......++.++|.+.+++.. ++...+++......+..++ +++.+|.
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 88889999999999999999999 88888999999999988887 3333444444443333333 4445454
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.6e-08 Score=89.40 Aligned_cols=166 Identities=17% Similarity=0.098 Sum_probs=113.5
Q ss_pred HHHhhccchhhHhcHHHHHHHc-CCcch---hHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeehhhhHHHHHHHHHHHh
Q 011956 281 VLQQFGGVNGIAFYASSIFISA-GFSGS---IGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAAGTCLGCLLAALSF 355 (474)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (474)
-+.+++.-..+..|+..-..+. +.+.. ..+..+....-+...++||++|| +|+|+.+..+.+++.++.+.+....
T Consensus 34 RFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~ 113 (498)
T COG3104 34 RFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS 113 (498)
T ss_pred HHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc
Confidence 3444444555566665544421 23332 44555555566777899999999 5999999999999999999988741
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011956 356 LFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPIN--MKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS 433 (474)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~ 433 (474)
......+.....+.+...+.+-+...+.+.|.+|++ +|-.+.++.++..++|+.++|.+.+++.+..+
T Consensus 114 ----------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g 183 (498)
T COG3104 114 ----------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183 (498)
T ss_pred ----------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC
Confidence 012223333333344555566677778999998753 37778899999999999999999999999656
Q ss_pred cchhHHHHHHHHHHHHhhheeCc
Q 011956 434 TGTFFAFSAICSLTVLFVAKLVP 456 (474)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~ 456 (474)
+...+..+.+....+++.+...|
T Consensus 184 ~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 66666666666666665555444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4e-06 Score=78.45 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=101.1
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMG 142 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~ 142 (474)
.+-.+|.++.+..+.......+..++.+++.++.+|+|+|+++.++.++.+++.++.-+.+ +.+.+++..++.++|.+
T Consensus 263 ~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~ 342 (467)
T COG2211 263 VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG 342 (467)
T ss_pred EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh
Confidence 4445676777788888888888899999999999999999999999999999999988876 78888999999999999
Q ss_pred hhhhhhhhhhhhcCCC------Ccc-hhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 143 LLSYVVPVYIAEITPK------NLR-GGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 143 ~~~~~~~~~i~~~~~~------~~r-~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
...+...++++|..+- ++| |...+......=+|..++..+.++.
T Consensus 343 ~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 343 IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876652 323 7777887777777777777655543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=88.42 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=116.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcc
Q 011956 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLG 385 (474)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (474)
.+........+.+++.+.+|++.||+|-|+++..+.++.+++.++..+... .....++..=++.|...+.
T Consensus 75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----------~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----------IGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------hcchhhHHHHHHhHHHHhH
Confidence 347888899999999999999999999999999999988888888877542 2223445566666666667
Q ss_pred ccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hhccchhHHHHHHHHHHHHhhheeCcC
Q 011956 386 MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICSLTVLFVAKLVPE 457 (474)
Q Consensus 386 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
..|....+..+-.|+++|++..++.....++|.+++-++.|.+-+ .|+...+++.+++..+..++.+++..+
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888999999999999999999999999999999999999998 477778888888887776665555543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-06 Score=68.37 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011956 77 SLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156 (474)
Q Consensus 77 g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 156 (474)
-.-.++......+.+++.+.+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-++.|++.+..+++...++.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 33455666677888888899999999999999999998864444 45678888999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 011956 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAF 185 (474)
Q Consensus 157 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 185 (474)
++++|++..+++......+.++|.++...
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888776543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=77.32 Aligned_cols=141 Identities=13% Similarity=-0.072 Sum_probs=105.8
Q ss_pred HHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccc
Q 011956 281 VLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDL 360 (474)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (474)
+.........+...+...++....+.++.......+..+..+..+++.+|+|+|+-+..+..++++++.++.-...
T Consensus 25 ~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~---- 100 (422)
T COG0738 25 WGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS---- 100 (422)
T ss_pred HHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 3333333444445555666666666778888888899999999999999999999999999999999988864321
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 361 QQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
...+...++..+..+............++....|++....-..+...++.+|++++|.+++.+..
T Consensus 101 -----~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 101 -----SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred -----hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23344444444444444445556667888888888888999999999999999999999998876
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.3e-06 Score=74.11 Aligned_cols=332 Identities=12% Similarity=0.108 Sum_probs=185.6
Q ss_pred cccCCChhhHH-HHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhh
Q 011956 67 NDLGLSVAEYS-LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLS 145 (474)
Q Consensus 67 ~~~~~s~~~~g-~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 145 (474)
.+.|++..|.. -+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+-+.-++.|...+ ..
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE 112 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE 112 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence 45567666542 33444445566666777779999988999988877777778888889999999999999999876 46
Q ss_pred hhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc------hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhc
Q 011956 146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKT 219 (474)
Q Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~ 219 (474)
.+-++++-+..+++++.++.+......-.|...|..++..+ ++...=.+......+.....+++|..+|.+.-+
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 77888898999999999999999888888888888887776 333333344444444556667788777654433
Q ss_pred CChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHH
Q 011956 220 GKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF 299 (474)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (474)
.+.++.. ..+....+.. ....+..+ ..-..-...+.+..++|......+ .+....+++.....|.+.+-
T Consensus 193 ~~~~~~~--v~~~e~~~~~-~~~~~~l~----~~~~~l~~~l~~~y~np~ll~WSl----WwAl~scg~~QV~nY~Q~LW 261 (433)
T KOG3810|consen 193 RLEDKIS--VGDLEEMNPQ-ASYMSYLR----GAFVLLWRDLQECYSNPRLLKWSL----WWALASCGYYQVTNYTQILW 261 (433)
T ss_pred cccccce--eccchhcCcc-chhhHHHH----HHHHHHHHHHHHHhcCchhhhhHH----HHHHhhchhHHHHHHHHHHH
Confidence 3332111 1111110000 00000000 000001112334444444333322 23333334566677777766
Q ss_pred HHcC-Ccc----hhHHHHHHHHHHHHHHHHHHHHhhcCCcceee--ehhhhHHHHHHHHHHHhhhcccccccccchHHHH
Q 011956 300 ISAG-FSG----SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLL--VSAAGTCLGCLLAALSFLFQDLQQWIKATPFLAL 372 (474)
Q Consensus 300 ~~~~-~~~----~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (474)
+... ... +..=.+..+.+.++.+..|.+.-++.|..-+. .+.+..+...+.+... ...|+..
T Consensus 262 ~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t-----------~~Iw~~Y 330 (433)
T KOG3810|consen 262 KEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT-----------QHIWVCY 330 (433)
T ss_pred HhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc-----------cceehhh
Confidence 5542 222 23444555666777778888765555542222 2222222212222110 2233333
Q ss_pred HHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHH
Q 011956 373 VGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS 422 (474)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 422 (474)
....++...+. ...++....+++....+.-|...|+..+..-+-..+-.
T Consensus 331 a~yvlfr~~y~-l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT 379 (433)
T KOG3810|consen 331 AGYVLFRVIYQ-LTITIATFQIARNLSSELFGLVFGINTFVALILQSILT 379 (433)
T ss_pred hhHHHHHhhHh-hhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhhe
Confidence 33444434433 33344444555555668888888887766554443333
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-07 Score=84.91 Aligned_cols=143 Identities=21% Similarity=0.271 Sum_probs=121.5
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (474)
-.||.+-.+.-.|........+-.+.-++.+++.+|+|+-+++..++.+..+=.+.....+|.|+.+...+++|+..+.+
T Consensus 397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI 476 (618)
T ss_pred HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence 45777777777888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCcchhHHHHHHHH-HHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhh
Q 011956 145 SYVVPVYIAEITPKNLRGGFTTVHQLM-ICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC 207 (474)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 207 (474)
+.+..+|++...||+-|..+.++.+.. .++|--+|.++|+.+ +=|..|.+.++.+++.++...
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887654 345555555555554 788889888888777555443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=85.24 Aligned_cols=139 Identities=20% Similarity=0.233 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
++......++..++.++.|+++|++|||+.+..+.+...++.++.... .+...+...=++.+...++.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a------------~~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA------------PSWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHhccchhhh
Confidence 578888889999999999999999999999999999999999998874 45555555555555555555
Q ss_pred cchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHhhheeCcCC
Q 011956 387 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS--STGTFFAFSAICSLTVLFVAKLVPET 458 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
..+...+.+|..|++.||...+..+....+|..++ .+.+...+.. .+...+....+..+...+..++.||+
T Consensus 160 ~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 160 SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56667899999999999999999999999888877 5555555421 23333333333333333335666654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.3e-06 Score=79.96 Aligned_cols=144 Identities=16% Similarity=0.009 Sum_probs=110.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhc
Q 011956 305 SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSL 384 (474)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (474)
.-+.....+.++.+++.+.++.+.||++..+.+... .++..++.+.... ..+...+++.-++.|.+..
T Consensus 82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~----~~~w~~~~~~~~~--------~~s~~~~ialr~llGl~es 149 (495)
T KOG2533|consen 82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS----GILWGLFGFLTAA--------VHSFPGLIALRFLLGLFES 149 (495)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH----HHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHhc
Confidence 344778888899999999999999999944433322 2222222211110 2455667777788888888
Q ss_pred cccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhccchhHHHHHHHHHHHHhhheeCcC
Q 011956 385 GMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-------WSSTGTFFAFSAICSLTVLFVAKLVPE 457 (474)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
+..|....++..-+.+++|+.-+|+.+...++|+++|+.+...+.. .++.+.+.+-+++.++.++++++++|+
T Consensus 150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 9999999999999999999999999999999999999999988642 567778888898888888888888876
Q ss_pred CCC
Q 011956 458 TKG 460 (474)
Q Consensus 458 ~~~ 460 (474)
...
T Consensus 230 ~P~ 232 (495)
T KOG2533|consen 230 NPS 232 (495)
T ss_pred Chh
Confidence 544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.2e-07 Score=82.84 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHhhccccccccccccccccccCCChhhHHH-----H---HHH-HHHHHHHHHHHHHHhhhccCchhHHHH
Q 011956 39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSL-----F---GSI-LTIGAMIGAIMSGKIADYIGRRGTMGF 109 (474)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~-----~---~s~-~~l~~~~~~~~~G~l~dr~Grr~~l~~ 109 (474)
.-++..+...|+......-.+.....+-+++++.+.+... . ..+ -..++..+-.+...++|+.|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 3444455555655555444455555677777765544333 1 111 112223344556678999999999999
Q ss_pred HHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011956 110 SDIVCIIGWVIIVFSKAA--------WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~--------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 181 (474)
|.+++++..+..+...|. ..+.+..++.-+| -......+-+|.||.+-|+..-|+.....-.|.+++..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 999999999999887761 1122223333333 23445556699999999999999999999999999877
Q ss_pred Hhccc---------hhhHHHHHhHHHHHHHHHHhhccCCChh
Q 011956 182 IGAFL---------NWRILALIGTIPCLVQLIGLCFIPESPR 214 (474)
Q Consensus 182 l~~~l---------~wr~~f~~~~~~~~~~~~~~~~~~~~p~ 214 (474)
.-..+ +-|+.|++.+..+++..+..+++||+.+
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 65544 7899999999999999998899998853
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=75.68 Aligned_cols=114 Identities=11% Similarity=0.157 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhhhhhhhhh
Q 011956 73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMGLLSYVVPV 150 (474)
Q Consensus 73 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~ 150 (474)
++..+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +.+.+++.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888899999999999999999999988766555544444433332 2333445556678887777777777
Q ss_pred hhhhcCCC------Cc-chhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 151 YIAEITPK------NL-RGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 151 ~i~~~~~~------~~-r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
++.|..+. ++ .|...+......-+|..+++.+++.+
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78777662 22 25656776677777777777666544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.1e-09 Score=99.99 Aligned_cols=142 Identities=26% Similarity=0.264 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccc
Q 011956 308 IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMG 387 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (474)
.......++.++|.++.|+++||+|||+.+..+..+..++.++..+... ..++..+...-++.|...++..
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS---------YNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---------cccccccccccccccccccccc
Confidence 5677778899999999999999999999999999999888888877410 0144555555555666666667
Q ss_pred chhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHHhhheeCcCC
Q 011956 388 GIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS---STGTFFAFSAICSLTVLFVAKLVPET 458 (474)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
+....++.|..|+++|+...++.+....+|..++..+.-...+.. .+.....+..+..+...+...+.||+
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777899999999999999999999998888888877664443322 24444444444444444444556653
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.2e-05 Score=73.52 Aligned_cols=122 Identities=10% Similarity=0.212 Sum_probs=111.0
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHH-HhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSG-KIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMG 142 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 142 (474)
.+...++++..+.+...+.......+++++.. .+...+|-|+++..|+..-.+...+.+++++.|+++....+.++. .
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~ 345 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G 345 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence 56788999999999999999999999999888 778889999999999999999999999999999999998888876 4
Q ss_pred hhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
...|...+.++.+.+++++|++.++....-++..+++|.+-+.+
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 57899999999999999999999999999999999999887655
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-06 Score=59.15 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=52.7
Q ss_pred ccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 011956 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (474)
Q Consensus 54 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 114 (474)
..+...|.+|...++.|+|+.|+|.+.++..+...++++++|.++||+++++.++....++
T Consensus 15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3444567888888899999999999999999999999999999999999988887665543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.2e-05 Score=69.57 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhh---h------HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCc---chhHHHHHHHHH
Q 011956 105 GTMGFSDIVCIIGWVIIVFSK---A------AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL---RGGFTTVHQLMI 172 (474)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~ 172 (474)
|++.++.++..+|.++..++. . .+.++++-++.++|.|+.-|...++++|.+++++ |.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 577888999999998854432 2 2578899999999999999999999999998763 467888899999
Q ss_pred HHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 173 CIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 173 ~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
++|..+++.+..++ +|.+.|.+.++..+++++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999988887 8999999988887776665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.7e-05 Score=70.79 Aligned_cols=335 Identities=11% Similarity=0.027 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH-HH-------hhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 011956 79 FGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII-VF-------SKAAWWLDLGRLLVGYGMGLLSYVVPV 150 (474)
Q Consensus 79 ~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~-~~-------~~~~~~l~~~r~l~G~~~~~~~~~~~~ 150 (474)
..-...+...+..+..-.+..|+..|.=+..++++..+..++. .+ ...++..++.-++.|++.+........
T Consensus 50 ~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~g 129 (437)
T TIGR00939 50 YTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFG 129 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchh
Confidence 3334444444555555555666665333333433322222221 11 124666777788899999988888888
Q ss_pred hhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcc----------chhhH-H-HHHhHHHHHHHHHHhhccCCChhHH--
Q 011956 151 YIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF----------LNWRI-L-ALIGTIPCLVQLIGLCFIPESPRWL-- 216 (474)
Q Consensus 151 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~----------l~wr~-~-f~~~~~~~~~~~~~~~~~~~~p~~~-- 216 (474)
+.+ .+|++ .+..+..|.+++++++.++--. ..++. . |.+..++.+++++....+++.|-..
T Consensus 130 la~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~~~~~ 204 (437)
T TIGR00939 130 LAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPFARYY 204 (437)
T ss_pred hcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 766 55544 3444444444444444333211 11221 2 2334444455566666677765322
Q ss_pred HhcCChhHHH--HHHHHHhCCCc---ch--HHHHHH--------HHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHH
Q 011956 217 AKTGKGIESE--AALQRLRGADA---DI--SEEAAE--------IREYTETLERLSEGGILELFQRKYAHSLIVGVGLMV 281 (474)
Q Consensus 217 ~~~~~~~~~~--~~~~~~~~~~~---~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (474)
.++.+.+++. +...+....++ +. .++... ..+..+.++...+.+.++++|+- |...+..++.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~kki--~~~~~~vf~~F 282 (437)
T TIGR00939 205 LQKKLDKGAGEDETKGELRSKAEQNGIPHGGDQPSPTLVLDWEKEPESPDEPQKPLKTSVWVVFTKV--WLLAFSVVFVF 282 (437)
T ss_pred HHhhcccccccccccccccccccccccccccccccccccccccccccCCccchhcccCcHHHHHHHH--HHHHHHHHHHH
Confidence 2221110000 00000000000 00 000000 00000111112234555665443 33444444444
Q ss_pred HHhhccchhhHhcHHHHHHHc-CCcc----hhHHHHHHHHHHHHHHHHHHHHhhcCCc-ceeeehhhhHHHHHHHHHHHh
Q 011956 282 LQQFGGVNGIAFYASSIFISA-GFSG----SIGMIAMVVIQIPMTLLGVLLMDKSGRR-PLLLVSAAGTCLGCLLAALSF 355 (474)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~g~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~ 355 (474)
+.... ..|.+........ +.+. -.....+.++..+|+.+..+.. +-++| +.+.+..+.=.+..-++.+..
T Consensus 283 ~vTL~---vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn 358 (437)
T TIGR00939 283 TVTLS---VFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCN 358 (437)
T ss_pred HHHHH---hcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhc
Confidence 43322 2232222111111 1111 2667777888889988554321 11222 122222221112111111111
Q ss_pred hhccccccc-ccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011956 356 LFQDLQQWI-KATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 425 (474)
Q Consensus 356 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 425 (474)
..... ..+ .-.+.+......+..+...+...+..+.+..+..++++|..+..+...+-.+|-.+|..+.
T Consensus 359 ~~~~~-~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 359 YPQRS-RLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred CCccc-cCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 000 0122233333344445555555667778888888889999998888888888888887763
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00032 Score=65.42 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=79.6
Q ss_pred HHHHHHHhhccccccccccccccccc--cCCChhhHHHHHHHHHHHHHHHHHHHHHhhh-----ccCchhHHHH------
Q 011956 43 VAVCGSYVFGSAIGYSSPAQSGITND--LGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-----YIGRRGTMGF------ 109 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~l~~------ 109 (474)
++.+..++.|.-.+.....+|.+-++ -+.|.+|.+...-+ ...+. .-++|.++.| |+||||.-++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~ 81 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS 81 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence 34556677888787766677877777 67888887654222 12222 2455666666 8999987543
Q ss_pred HHHHHHHHHHH----------HHHh-------hhH--HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHH
Q 011956 110 SDIVCIIGWVI----------IVFS-------KAA--WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQL 170 (474)
Q Consensus 110 ~~~~~~~~~~~----------~~~~-------~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 170 (474)
|..+..++.-. -... ++. ..+...-++.=+-.+---.+.-.+.-....+++++.+......
T Consensus 82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv 161 (544)
T PF13000_consen 82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV 161 (544)
T ss_pred HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence 33333322222 0000 011 1122222223233333344445555666778888988888888
Q ss_pred HHHHHHHHHHHHhccc
Q 011956 171 MICIGVSMTYLIGAFL 186 (474)
Q Consensus 171 ~~~~g~~~~~~l~~~l 186 (474)
+.++|..++..+--.+
T Consensus 162 G~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 162 GQTAGYFLSFTVFLAL 177 (544)
T ss_pred HhhhhHHHHHHHHHhh
Confidence 8888888876654433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00023 Score=65.10 Aligned_cols=272 Identities=13% Similarity=0.041 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHhHHHHH
Q 011956 126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCL 200 (474)
Q Consensus 126 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l-----~wr~~f~~~~~~~~ 200 (474)
.++..++.-.+.+++.|......+...++ +|++.-+-.++=.+.+..+-.++.-...... +=..-|.+..++.+
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~l 194 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILL 194 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHH
Confidence 45666777788888888877777776555 4555433333222222222222222211222 11223444555555
Q ss_pred HHHHHhhccCCChh--HHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHH
Q 011956 201 VQLIGLCFIPESPR--WLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (474)
Q Consensus 201 ~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (474)
++++....+|+.|- +..+++..++.+ .++...+ .+...+....+.++++++-.. .....+
T Consensus 195 lC~i~y~~l~~lpf~~yy~~~~~~~~~~-----l~~~~~~-----------~~~~~~~~~~~~~~i~~k~~~--~~~~i~ 256 (406)
T KOG1479|consen 195 LCFVLYLVLPKLPFVRYYREKAGSIGSK-----LAAEGIE-----------SDSSLSNEDDSLWDIFKKIKD--LAFNIF 256 (406)
T ss_pred HHHHHHHHhhcchHHHHHhhhccccccc-----ccccccc-----------cccccccccchHHHHHHHHHH--Hhhchh
Confidence 56666666777763 332222221111 0000000 000000011134455543221 122222
Q ss_pred HHHHHhhccchhhHhcHHHHHHHcCCcch---hHHHH-HHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHH
Q 011956 279 LMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIA-MVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354 (474)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (474)
+.++ ......|.+..........+.. +.... +.+...+|.....++-+ ..+|.+.+....=.+..-++.+.
T Consensus 257 lvy~---VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~--~~~r~l~i~v~lR~lfiPlF~~c 331 (406)
T KOG1479|consen 257 LVYF---VTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTW--PDPRKLTIPVLLRLLFIPLFLLC 331 (406)
T ss_pred eeee---eeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccC--CCCceehHHHHHHHHHHHHHHHh
Confidence 2222 2233444444333322221111 33333 66777777665554433 33333333322222222222211
Q ss_pred hhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011956 355 FLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFT 424 (474)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i 424 (474)
-+.. .... ..+.++........+...+-..+..+.+..+.+|++++-.+-.+...+-..|-+.|..+
T Consensus 332 n~~~-~~v~--~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 332 NYPP-LPVV--FESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred ccCC-CCce--ecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1100 0000 12223333444445555555567778888898888777776666666665665555544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.2e-05 Score=72.68 Aligned_cols=144 Identities=11% Similarity=0.032 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCC-cceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 308 IGMIAMVVIQIPMTLLGVLLMDKSGR-RPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
+......++..+..+..|+...|.+. |+.++.+.++++++.++.....+.. ....+.++..-++ .+.+.+.
T Consensus 75 ~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-------~~~~y~mL~~R~l-~Gvg~~n 146 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-------NGVKYLMLVARIL-TGVGVGN 146 (488)
T ss_pred HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHH-cCcCccc
Confidence 67777888999999999999999886 8888999999999999885443221 1122233333333 2333344
Q ss_pred cchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hccchhHHHHHHHHHHHHhhh
Q 011956 387 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW--------------SSTGTFFAFSAICSLTVLFVA 452 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 452 (474)
....-.|+++..-.++|.++.+..+....+|.++||.+...+... -+..+.|+...+.++..++..
T Consensus 147 ~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~ 226 (488)
T KOG2325|consen 147 FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL 226 (488)
T ss_pred HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence 455568888876678899999988888888888888877655431 123456666777777766666
Q ss_pred eeCcCCC
Q 011956 453 KLVPETK 459 (474)
Q Consensus 453 ~~~~~~~ 459 (474)
++.+|..
T Consensus 227 ~~f~E~~ 233 (488)
T KOG2325|consen 227 FFFKEVY 233 (488)
T ss_pred hheeecc
Confidence 6666643
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0063 Score=57.00 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=87.4
Q ss_pred ccccccCC---ChhhHHHHHHHHHH-HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh---------h----
Q 011956 64 GITNDLGL---SVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK---------A---- 126 (474)
Q Consensus 64 ~i~~~~~~---s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---------~---- 126 (474)
.+.+.+.+ +++.+.++-+..-+ +..+..++.+++.+++.+++++-.-+..+....+++++.- +
T Consensus 48 ~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~ 127 (509)
T COG3202 48 SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFS 127 (509)
T ss_pred HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHH
Confidence 35666544 46678888888888 7788999999999999999999888888877777777631 1
Q ss_pred -------------------HHHHHHHHHHHHhhhhhhhh-hhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 127 -------------------AWWLDLGRLLVGYGMGLLSY-VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 127 -------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
.|..-+.-...-+=...... .-.....|.++.+|-.|..++++.+.+++..++..+..++
T Consensus 128 ~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 128 RDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 02222222222222222222 3455667888888889999999999999999998888777
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.6e-05 Score=63.85 Aligned_cols=237 Identities=13% Similarity=0.088 Sum_probs=121.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHH--HHhc-----cc--hhhHHHHHhHHHHHHHHHHhhccCCC--hhHHHhcCChhHHHH
Q 011956 159 NLRGGFTTVHQLMICIGVSMTY--LIGA-----FL--NWRILALIGTIPCLVQLIGLCFIPES--PRWLAKTGKGIESEA 227 (474)
Q Consensus 159 ~~r~~~~~~~~~~~~~g~~~~~--~l~~-----~l--~wr~~f~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~ 227 (474)
|+|+..+.+...+.++|.++.- .+-. .+ +|++++.+.+++.++-+++...+-++ +. +.+ +
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~----~~~-~---- 72 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIY----SPK-E---- 72 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----Ccc-c----
Confidence 5677778888888889987653 3322 11 89999999888877765555444221 11 000 0
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCc--
Q 011956 228 ALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFS-- 305 (474)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 305 (474)
++.+.+....++.+..+.+|++..|...+.+........ ....+.+...+....+.+
T Consensus 73 -------------------k~~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V--~p~t~~~~~~~~~~s~~ni~ 131 (267)
T PF07672_consen 73 -------------------KQEKENSTLSKKPSYKSILKEKETWKWILIYGIWLVVVV--FPFTPSWFNILIWISPANIK 131 (267)
T ss_pred -------------------ccccccccccccchHHHHHccchHHHHHHHHHHHheeEE--EeccchhHhHhhhcCccccc
Confidence 000011122244677888888887777666655443221 222233444333333221
Q ss_pred ----ch-------hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhh-hcccccccccchHHHHH
Q 011956 306 ----GS-------IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL-FQDLQQWIKATPFLALV 373 (474)
Q Consensus 306 ----~~-------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 373 (474)
.+ ........+..+|.+..|...+..-+||..+.....+.+.+.++..... ....+ +........
T Consensus 132 ~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~---~~~~~~~f~ 208 (267)
T PF07672_consen 132 SVVSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPG---NAAGFAFFY 208 (267)
T ss_pred ccccccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcc---hHHHHHHHH
Confidence 11 3333334444455566666655433344333333222222222222111 11110 012233455
Q ss_pred HHHHHHHHHhccccchhhhhhccc--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 374 GVLVYTGSFSLGMGGIPWVIMSEV--FPINMKGSAGSLVTLVSWLGSWIISFTFNFL 428 (474)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~ 428 (474)
.+.++.+.+..+..++......|. ..|++.|.-.|+.-.++++.-.+.-.+...+
T Consensus 209 I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i 265 (267)
T PF07672_consen 209 IFGFLAGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVI 265 (267)
T ss_pred HHHHHHHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667777777777765555554 2456777777777777777666665555444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.017 Score=55.64 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=78.6
Q ss_pred ChhhHHHHHHHHHH-HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHh--h-----------------------
Q 011956 72 SVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--K----------------------- 125 (474)
Q Consensus 72 s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~----------------------- 125 (474)
+++.+.++-....+ ...+...+..+++++++|++++-+....+.....+.++. |
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55667777665444 445667888999999999999987777776666666552 1
Q ss_pred ------hHHHHHHHHHHHHhhhhhhhh-hhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 126 ------AAWWLDLGRLLVGYGMGLLSY-VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 126 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
+.|.+.+.-+..-+-.....+ .-..+..|.++.+|-.|..++++.+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222232233333 3577788999999999999999999999999988776555
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00048 Score=68.79 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 308 IGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
.....+....-+...++|+++|+ +|+++.+..+.++..++..++.+.......+ .......+..+.+...+..++
T Consensus 27 ~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~----~~~~~~~l~gLaLia~G~Ggi 102 (654)
T TIGR00926 27 VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH----PLHDLLDLLGLALIALGTGGI 102 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc----chHHHHHHHHHHHHHhhcccc
Confidence 33444444555666788899996 7999999998888888887776532111000 011122223333344444556
Q ss_pred cchhhhhhcccCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 387 GGIPWVIMSEVFPIN---MKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
-|...+...|.++++ .+-....+.....++|+.+++.+.+++.+
T Consensus 103 Kp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 103 KPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred ccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677678888887643 46778888888999999999999998875
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0089 Score=53.99 Aligned_cols=149 Identities=20% Similarity=0.184 Sum_probs=78.7
Q ss_pred HHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHH
Q 011956 297 SIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALV 373 (474)
Q Consensus 297 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (474)
.+++..+.... ..+........+.+.+.|.+.||+|||+..+...++..++++... .++...++
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-------------~~~~~~L~ 125 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-------------SSNYPVLL 125 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-------------ccccHHHH
Confidence 34455566533 555555566777778889999999999988777777777665433 23334444
Q ss_pred HHHHHHHHHhccccchhhhh-hc----ccCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhh---hccchhHHHHHHH
Q 011956 374 GVLVYTGSFSLGMGGIPWVI-MS----EVFPINMKGSAGSLVTLV-SWLGSWIISFTFNFLMKW---SSTGTFFAFSAIC 444 (474)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~-~~----~~~p~~~~~~~~g~~~~~-~~~g~~i~~~i~g~~~~~---~~~~~~~~~~~~~ 444 (474)
..=++.+.......+..-++ +. +-+|++..+...+..... +.+-++.+..+...+.+. +...++..-..++
T Consensus 126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l 205 (354)
T PF05631_consen 126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL 205 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 43344444333333322222 22 234555556666555533 334444455555555552 2233444444444
Q ss_pred HHHHHhhheeCcCC
Q 011956 445 SLTVLFVAKLVPET 458 (474)
Q Consensus 445 ~~~~~~~~~~~~~~ 458 (474)
.+..+++....+|.
T Consensus 206 ~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 206 AVAAVLILKTWPEN 219 (354)
T ss_pred HHHHHHHHhccccc
Confidence 44444444444443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=61.18 Aligned_cols=157 Identities=16% Similarity=0.126 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHHh---hccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhH
Q 011956 268 KYAHSLIVGVGLMVLQQ---FGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGT 344 (474)
Q Consensus 268 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 344 (474)
+.+|..++...+..+.. ...+..+..|...+++ ......+...++.+..++-.+.+-|+.||+|-|....++....
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 44555555555554433 2223344444445554 2222337888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccchH-HHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011956 345 CLGCLLAALSFLFQDLQQWIKATPF-LALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISF 423 (474)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 423 (474)
+++..+=......... ...+ ........+.......+.....-...--+|+++|+++..+..+...+|.+++-.
T Consensus 120 ~iGa~Ir~iss~p~v~-----~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFVP-----PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHhhhccCcccc-----ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 9988877665432111 1111 112222222222222222222233444578999999999999998899888877
Q ss_pred HHHHHHh
Q 011956 424 TFNFLMK 430 (474)
Q Consensus 424 i~g~~~~ 430 (474)
+-+.+..
T Consensus 195 lppilV~ 201 (480)
T KOG2563|consen 195 LPPILVP 201 (480)
T ss_pred ccceecC
Confidence 7666654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0017 Score=60.11 Aligned_cols=114 Identities=16% Similarity=0.081 Sum_probs=84.1
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 011956 69 LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC-----IIGWVIIVFSKAAWWLDLGRLLVGYGMGL 143 (474)
Q Consensus 69 ~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~-----~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 143 (474)
+.-..++..+...+|.+|..++.--.- +. |+ |++.+.+.+-. .+.....-+.++.|..++.-+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~-~~-ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLP-FF-RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhccee-ee-eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 433467888888888888777644321 11 33 44433333222 22222334467899999999999999999
Q ss_pred hhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
.+......+.|-.++++|-.+++..+.+-++|..++..++-.+
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888665
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.018 Score=56.26 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=72.0
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH--HH-HHHHHH----HHhhhH-HHHHHHHHH
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV--CI-IGWVII----VFSKAA-WWLDLGRLL 136 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~--~~-~~~~~~----~~~~~~-~~l~~~r~l 136 (474)
+.--+|-+..+.+.+.+++.+|.++|+.++|++.++.-++.. .+-+.+ .+ ++..+. ++...+ ..++..-++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788899999999999999999999988744333222 111111 11 111111 111111 122334566
Q ss_pred HHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
.++..|+..|....+..+... ++-++..|-......+|.++|.++.+++
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 788888888888777765432 2235566666777777777777776655
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.012 Score=46.96 Aligned_cols=109 Identities=7% Similarity=-0.045 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhcccc
Q 011956 308 IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMG 387 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (474)
....+......++.++.+.+.+++|.|+.+.++.+...+-...... .+...+.....+.+.......
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------------~~~~~l~~~s~l~G~~~a~lW 107 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------------PNSYTLYPASALLGFGAALLW 107 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHhhhhHHhh
Confidence 4445555566777788889999999999998887766544444332 233444444445555555555
Q ss_pred chhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011956 388 GIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 429 (474)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~ 429 (474)
...-.++.+...++.+++..++...+.+.+.++|..+.-.+.
T Consensus 108 ~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 108 TAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555578888888899999999999999988888877665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0095 Score=57.05 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=109.5
Q ss_pred ccccC---CChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH----------hhhHHHHHH
Q 011956 66 TNDLG---LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF----------SKAAWWLDL 132 (474)
Q Consensus 66 ~~~~~---~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~ 132 (474)
.++.+ .++...|.+..+..++..++..+..+..-+..-|+++..+.++.++..+.-.. .++.+-.+.
T Consensus 244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lg 323 (433)
T PF03092_consen 244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALG 323 (433)
T ss_pred eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEE
Confidence 34455 88999999998999999999999988888888899998888877766554221 122233334
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---------h---hhHHHHHhHHHHH
Q 011956 133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---------N---WRILALIGTIPCL 200 (474)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---------~---wr~~f~~~~~~~~ 200 (474)
--++..+.....+-....++++..|+..-|...++..+..++|..++..++..+ + -.+..++..+..+
T Consensus 324 d~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~l 403 (433)
T PF03092_consen 324 DTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQL 403 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHH
Confidence 456677777777788888999999999999999999999999999888888776 1 2234445555555
Q ss_pred HHHHHhhccCCChh
Q 011956 201 VQLIGLCFIPESPR 214 (474)
Q Consensus 201 ~~~~~~~~~~~~p~ 214 (474)
+.+.+..++|++.+
T Consensus 404 l~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 404 LPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHcCCCch
Confidence 55666666777643
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.046 Score=51.81 Aligned_cols=103 Identities=17% Similarity=0.317 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhhh---ccCchhHHHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHHHHhh
Q 011956 82 ILTIGAMIGAIMSGKIAD---YIGRRGTMGFSDIVCIIGWVIIVFS------------------KAAWWLDLGRLLVGYG 140 (474)
Q Consensus 82 ~~~l~~~~~~~~~G~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~ 140 (474)
...+|..++..+.+.+.+ ++||++.+.++..+..++.++.-.. +++...++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 344455555566666665 5899999999999988888776552 1456677888999999
Q ss_pred hhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 011956 141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF 185 (474)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 185 (474)
.+......+.++++.. +++|..+.++...-.+++..++......
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999 5668888888888777777766555444
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00015 Score=65.96 Aligned_cols=118 Identities=10% Similarity=-0.048 Sum_probs=3.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccccc-ccchHHHHHHHHHHHHHHhccc
Q 011956 308 IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWI-KATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
..+..+.++..+|+.+..+..-+..+++.+.+..+.=.+..-++...-........+ .-.+.+..+...++.+...+-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 456678899999999887643221123333322222222221111111110000000 0112233334444455555556
Q ss_pred cchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011956 387 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 425 (474)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 425 (474)
.+..+.+..+..++++|..+..+....-.+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888888888888877776654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.057 Score=51.78 Aligned_cols=110 Identities=11% Similarity=-0.014 Sum_probs=75.3
Q ss_pred HHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccc--cc----------cc-cc------hHHHHHHHHHHHHH
Q 011956 321 TLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQ--QW----------IK-AT------PFLALVGVLVYTGS 381 (474)
Q Consensus 321 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~-~~------~~~~~~~~~~~~~~ 381 (474)
.++-+++++|++|++.............+++.+..++.... +. +. .. ..+....+.+..-.
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 67789999999999988777766666666666554322110 00 00 00 11222233334444
Q ss_pred Hhccccc-hhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 382 FSLGMGG-IPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 382 ~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
++....+ +.|.+++|....++..+-.++.....++|..+++.+..++.+
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 778999999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.05 Score=51.51 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=95.0
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH---h---h----hHHHH
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF---S---K----AAWWL 130 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~---~----~~~~l 130 (474)
.+......-|+++..+|..-+...+....+.....++.+|+|..|.=.++...-..+..++.. . + +...+
T Consensus 280 lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l 359 (432)
T PF06963_consen 280 LMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLL 359 (432)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHH
Confidence 333344455999999999999999999999999999999999988877777765544444332 1 2 33344
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
+.+-.+.-+|.=..-.+..-++.|..|+++||...|......++--++...++-.+
T Consensus 360 ~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 360 LGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445555555556677788999999999999999999998888888777776555
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0095 Score=41.04 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=40.2
Q ss_pred chhhHhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehh
Q 011956 288 VNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSA 341 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 341 (474)
...+..|.+.++++.|.+.. ....+..+..+++.++.|.++||.++++......
T Consensus 16 ~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 34455566666777777765 6666667788899999999999999988765543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.027 Score=55.10 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=43.1
Q ss_pred HHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hhccchhHHHHHHHHHHHHh
Q 011956 380 GSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICSLTVLF 450 (474)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~--~~~~~~~~~~~~~~~~~~~~ 450 (474)
+...+...|...-...+. ..+..+...|-.+....+|+++|+.+.+++.- .+.....++.+.+.++++++
T Consensus 121 ~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred HHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 333334455544444332 22346778888999999999999999998876 44444555555555444443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.034 Score=55.45 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccc-------------cc----------
Q 011956 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDL-------------QQ---------- 362 (474)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~---------- 362 (474)
.+++...+-++..+......+...|..|-+.+-++.++++++.++..+.....+. .+
T Consensus 134 sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~ 213 (735)
T KOG3626|consen 134 SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCN 213 (735)
T ss_pred ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhcc
Confidence 3455566667777777777788888888899999999999999988775322111 00
Q ss_pred -------------c--cccc--hHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011956 363 -------------W--IKAT--PFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 425 (474)
Q Consensus 363 -------------~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 425 (474)
. ...+ .+..+++..++.|.+.....++..+|+-|-+.+++.+...|+.+++..+|-++|-.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllg 293 (735)
T KOG3626|consen 214 KSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLG 293 (735)
T ss_pred CCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHH
Confidence 0 0111 3344555566667777777888889999999999999999999999999999998888
Q ss_pred HHHHh
Q 011956 426 NFLMK 430 (474)
Q Consensus 426 g~~~~ 430 (474)
++...
T Consensus 294 S~~l~ 298 (735)
T KOG3626|consen 294 SFCLK 298 (735)
T ss_pred HHHHH
Confidence 87764
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.00083 Score=65.74 Aligned_cols=133 Identities=12% Similarity=0.030 Sum_probs=1.7
Q ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccccc--------------
Q 011956 297 SIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQ-------------- 362 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 362 (474)
..++....+.+++....-++.++..++..++.+|..|-|.+-.+.++++++.+++.+.....+...
T Consensus 31 rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 31 RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 334444455567888888888888888888888888888888999999999888776543221100
Q ss_pred --cc-------------------cc---chHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHH
Q 011956 363 --WI-------------------KA---TPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS 418 (474)
Q Consensus 363 --~~-------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 418 (474)
.. +. .....++...++.|.+.....++..+|+-|.+++++.+...|+......+|-
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 00 00 1123333444555555556678888999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 011956 419 WIISFTFNFLM 429 (474)
Q Consensus 419 ~i~~~i~g~~~ 429 (474)
++|-.+++...
T Consensus 191 a~Gf~lg~~~L 201 (539)
T PF03137_consen 191 ALGFLLGSFCL 201 (539)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88877777664
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.16 Score=47.37 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=83.4
Q ss_pred hhhHhcHHHHHHH-cCCcch----hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccc
Q 011956 289 NGIAFYASSIFIS-AGFSGS----IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQW 363 (474)
Q Consensus 289 ~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (474)
..-|+..+.+.+. .+.+.. ..+-...=..++..+....+.|.++.|.+++.+.+...+...++.+
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~---------- 90 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF---------- 90 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----------
Confidence 3445555554443 344433 2222222344555566778899999999988888777777766665
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 364 IKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
......+-..-++.+... +.-...++++-...|+++--++.+......-+|..++..++-.+..
T Consensus 91 --~~sv~~mq~~q~~yg~~~-a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 91 --GTSVLAMQLMQFFYGLAT-AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred --HCcHHHHHHHHHHHHHHH-HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433 2244556777777788888889999999988888888888877776
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.065 Score=48.46 Aligned_cols=115 Identities=27% Similarity=0.243 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccc
Q 011956 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386 (474)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (474)
+.......+...++.+..|.+.||.|||+.+..+......+.+...+.. ..............+......
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~ 111 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP----------NVGLALLLILRLLQGLGGGGL 111 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc----------cchHHHHHHHHHHHHhhhHHH
Confidence 4666677777777779999999999998666555544333322222210 111222333333234444455
Q ss_pred cchhhhhhcccCCC-CchhhHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 011956 387 GGIPWVIMSEVFPI-NMKGSAGSLVTL-VSWLGSWIISFTFNFLMKW 431 (474)
Q Consensus 387 ~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~i~~~i~g~~~~~ 431 (474)
.+....+..|..|+ +.++...+.... ....|..++|.+.+.+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777889999886 578888888888 5778888888777766654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.037 Score=52.02 Aligned_cols=118 Identities=15% Similarity=-0.003 Sum_probs=71.7
Q ss_pred eeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCC---chhhHHHHHHH
Q 011956 336 LLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPIN---MKGSAGSLVTL 412 (474)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~ 412 (474)
++..+.++..++.+++.+.......+. ......+...+.+...+.++.-|...+...|.++++ ++......++.
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~---~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~ 79 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPS---GIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYW 79 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC---------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhh---hHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 455677777777777655443322100 112223333333445555677777788888888755 46677788899
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhhheeCc
Q 011956 413 VSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 456 (474)
Q Consensus 413 ~~~~g~~i~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (474)
..++|+.+++.+.+++.+..++...+....++.+.+++.+...+
T Consensus 80 ~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 80 GINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 99999999999999999854455555555555555555544443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.3 Score=42.40 Aligned_cols=107 Identities=9% Similarity=0.147 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCch-hHHHHHHH---HHHHHHHHHHH---------hhhHHHHHHHHHHHHhhhhh
Q 011956 77 SLFGSILTIGAMIGAIMSGKIADYIGRR-GTMGFSDI---VCIIGWVIIVF---------SKAAWWLDLGRLLVGYGMGL 143 (474)
Q Consensus 77 g~~~s~~~l~~~~~~~~~G~l~dr~Grr-~~l~~~~~---~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~~ 143 (474)
-.....|.++=.+|..+..+.. .-++| +.+.+..+ ++.-..++|.. -++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4556666777777666554321 11223 12222222 22323334432 24556677789999999999
Q ss_pred hhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011956 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184 (474)
Q Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 184 (474)
....+..+..+..+++||..+..+...+..+|..+|..++-
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888888888888877643
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.091 Score=46.22 Aligned_cols=129 Identities=10% Similarity=-0.024 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 011956 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEI 155 (474)
Q Consensus 76 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (474)
.|.+.-+-.+...+..+.+....||+---.=..+..++.+.+.++.+++++.++-+++-.+..++.|.....-.++-+.+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence 45555555566666667777788886443334455667778888899999999999999999998887766666554433
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhccc------hhhHHHHHhHHHHHHHHHHhhcc
Q 011956 156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFI 209 (474)
Q Consensus 156 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l------~wr~~f~~~~~~~~~~~~~~~~~ 209 (474)
++ ...+.++.+.+.+..+|..--..+ .-|...++...+-++.+...+++
T Consensus 144 -~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 144 -PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred -CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 22 233444444444444443221111 45666777665555544444443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.5 Score=42.22 Aligned_cols=72 Identities=11% Similarity=0.161 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011956 84 TIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156 (474)
Q Consensus 84 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 156 (474)
.+......++.+.+.+++|-|+++.++...+.. .+..-+-+.+..++-.-...|++.+..+..--+++++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~l-yiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYAL-YIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 344455556666899999999999988887765 333334567888889999999999998888877776554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.70 E-value=3.6 Score=38.41 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hhccchhHHHHHHHHH
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICSL 446 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~--~~~~~~~~~~~~~~~~ 446 (474)
.+....................+...++. |++.....++-.+..+.+.+.. -.+.....+ ......++..+.+..+
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqavm~G~a~aG~l~Sl~-~i~tka~~~~~~~sA~~yF~~s~~~~l 194 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAVMSGQALAGTLTSLL-RILTKAAFSDSRTSALIYFITSTVILL 194 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHHHhcchhHhHHHHHH-HHHHHHhcCCCCceeehhHHHHHHHHH
Confidence 33334444444444444555555666665 6565554444344443333322 223333333 3444556666666666
Q ss_pred HHHhhheeCc
Q 011956 447 TVLFVAKLVP 456 (474)
Q Consensus 447 ~~~~~~~~~~ 456 (474)
.+++++...+
T Consensus 195 lC~i~y~~l~ 204 (406)
T KOG1479|consen 195 LCFVLYLVLP 204 (406)
T ss_pred HHHHHHHHhh
Confidence 6666555433
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.87 E-value=1.5 Score=39.02 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=83.8
Q ss_pred ccccCCCh-hhHHHHHHHHHHHHHHHHHHHHHhhhccCc-hh-----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 011956 66 TNDLGLSV-AEYSLFGSILTIGAMIGAIMSGKIADYIGR-RG-----TMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG 138 (474)
Q Consensus 66 ~~~~~~s~-~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~-----~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (474)
.+.+..+. .|.-|....|.+|..+..- +-|+=+ +. ++..-..++.+...+..+.+++|..++.-+..|
T Consensus 279 ~~g~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EG 353 (409)
T KOG3880|consen 279 SHGFSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEG 353 (409)
T ss_pred ccCCccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34455543 4588988888877654321 111111 11 123333444555566677889998888899999
Q ss_pred hhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 011956 139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (474)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 186 (474)
+-.|..++...--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus 354 LlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 354 LLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred hcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 988989999988888888999999999999999999999998887655
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=88.78 E-value=1.7 Score=30.50 Aligned_cols=61 Identities=25% Similarity=0.067 Sum_probs=47.0
Q ss_pred cHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHH
Q 011956 294 YASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354 (474)
Q Consensus 294 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (474)
.+|...++.+.+.. +..+...++.++|.+...++.++..+++.+..+.+...+..+.+.+.
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666543 78888889999999999999888777788888888777777777663
|
Note that many members are hypothetical proteins. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.15 Score=46.49 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-cCchhHHHHHH--HHHHHHHHHHH----------HhhhHHHHHHHHHHHHhhhhhh
Q 011956 78 LFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSD--IVCIIGWVIIV----------FSKAAWWLDLGRLLVGYGMGLL 144 (474)
Q Consensus 78 ~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~--~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~~~~ 144 (474)
.....|.++-.+|..+.++.--+ -.+|++...+. +++.-..++|. ..+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34667888888888877764211 12444433211 12222222231 2345566778899999999999
Q ss_pred hhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011956 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184 (474)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 184 (474)
......+..+..++++|..+-.+......+|..+|..++-
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp -HHHH-----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888888888888888776653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.17 E-value=10 Score=37.77 Aligned_cols=144 Identities=17% Similarity=0.096 Sum_probs=83.7
Q ss_pred cchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeehhhhHHHHHHHHHHHhhhccccc---
Q 011956 287 GVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVSAAGTCLGCLLAALSFLFQDLQQ--- 362 (474)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 362 (474)
....+..|+...++..+..+.-.............+.+++++|.+ ||-+++.++..+..++..++..........+
T Consensus 56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~ 135 (571)
T KOG1237|consen 56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC 135 (571)
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence 334555666666655553333333444444555567888999964 7878888888888877666655443221110
Q ss_pred ----c----cccch-H-HHHHHHHHHHHHHhccccchhhhhhcccCCC----C--chhhHHHHHHHHHHHHHHHHHHHHH
Q 011956 363 ----W----IKATP-F-LALVGVLVYTGSFSLGMGGIPWVIMSEVFPI----N--MKGSAGSLVTLVSWLGSWIISFTFN 426 (474)
Q Consensus 363 ----~----~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~--~~~~~~g~~~~~~~~g~~i~~~i~g 426 (474)
. ..... . ..+...+.....+.++.-|...+.-.|.+++ + .+..-........+.|..++..+.-
T Consensus 136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v 215 (571)
T KOG1237|consen 136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV 215 (571)
T ss_pred cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence 0 00111 1 1222222222334455567777888888872 2 2235667777778899999988888
Q ss_pred HHHh
Q 011956 427 FLMK 430 (474)
Q Consensus 427 ~~~~ 430 (474)
+..+
T Consensus 216 yiq~ 219 (571)
T KOG1237|consen 216 YIQD 219 (571)
T ss_pred hhhh
Confidence 8877
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=87.93 E-value=5.2 Score=38.93 Aligned_cols=114 Identities=12% Similarity=0.013 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccc--cccc----------cc-------chHHHHHHHHH
Q 011956 317 QIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDL--QQWI----------KA-------TPFLALVGVLV 377 (474)
Q Consensus 317 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----------~~-------~~~~~~~~~~~ 377 (474)
.++...+-.+++++++++++..+..........++++..++... ++.. .. ...|....+.+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 34445567789999999988776666655555555554332111 1100 00 00111222222
Q ss_pred HHHHHhccccc-hhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 378 YTGSFSLGMGG-IPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 378 ~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
..-..+....+ ..|.+++|..+.++..+-+++.....++|..++..+...+.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333 468999999999999999999999999999999888877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.89 E-value=0.033 Score=47.50 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=32.1
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHh---------hhccCchhHH
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKI---------ADYIGRRGTM 107 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l---------~dr~Grr~~l 107 (474)
..++.+.++.....+.-+..+.-++..++.|.. .||+|||+..
T Consensus 43 fltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 43 FLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred HHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 456677787777788778888888888887644 5699998764
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.18 E-value=13 Score=34.48 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=22.6
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011956 392 VIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 425 (474)
Q Consensus 392 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~ 425 (474)
........+++.|-++.......+.|.+++-.+.
T Consensus 156 gwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 156 GWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 4445555667788877777777777777665543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=86.19 E-value=4 Score=39.15 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=38.5
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh----h-------------ccchhHHHHHHHHHHHHhhhee
Q 011956 392 VIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW----S-------------STGTFFAFSAICSLTVLFVAKL 454 (474)
Q Consensus 392 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~ 454 (474)
.++.....+++++-|+.......+.|.+++-.+.=.+.+. . -.....+.+.+.++..+++.++
T Consensus 141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~ 220 (544)
T PF13000_consen 141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFF 220 (544)
T ss_pred hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheE
Confidence 3444455668888888777777777777766555444321 0 0112344555555666666666
Q ss_pred CcCC
Q 011956 455 VPET 458 (474)
Q Consensus 455 ~~~~ 458 (474)
.+|.
T Consensus 221 k~E~ 224 (544)
T PF13000_consen 221 KKEK 224 (544)
T ss_pred eecc
Confidence 6654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.94 E-value=13 Score=33.87 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=57.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHH----HHHHHHHHHHHHHH-HHh----hhHHHHHHHHHHHHhh
Q 011956 70 GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTM----GFSDIVCIIGWVII-VFS----KAAWWLDLGRLLVGYG 140 (474)
Q Consensus 70 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l----~~~~~~~~~~~~~~-~~~----~~~~~l~~~r~l~G~~ 140 (474)
|-+.-|.+.+.+.|.....+|+...-++.|.--.-+.+ +.|++.-.-..++. .|+ ++-+.+++.-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 44567889999999999999999888887753332222 22222211111111 232 4667788899999999
Q ss_pred hhhhhhhhhhhhhh
Q 011956 141 MGLLSYVVPVYIAE 154 (474)
Q Consensus 141 ~~~~~~~~~~~i~~ 154 (474)
.|...|..+.++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999999998876
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.88 E-value=15 Score=32.31 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCch--hHHHHHHHHHHHHHHHHHH----hh---hHHHHHHHHHHHHhhhhhhhh
Q 011956 76 YSLFGSILTIGAMIGAIMSGKIADYIGRR--GTMGFSDIVCIIGWVIIVF----SK---AAWWLDLGRLLVGYGMGLLSY 146 (474)
Q Consensus 76 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----~~---~~~~l~~~r~l~G~~~~~~~~ 146 (474)
-|.+.+.+++...+|+-+..++..|-..| ..+.+..++.++...+... +| +...-+++-.+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 58999999999999999998888775544 4455555555444433322 11 222234555666677788999
Q ss_pred hhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHh----ccchhhHHHHHhHHHHHHHHH
Q 011956 147 VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----AFLNWRILALIGTIPCLVQLI 204 (474)
Q Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~----~~l~wr~~f~~~~~~~~~~~~ 204 (474)
....+=+++.|++.|+..+.++-.-.++=..++-..- .-.+-|..|-++.+...+..+
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence 9999999999999999999887765444333332220 111667888888777666544
|
|
| >PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown | Back alignment and domain information |
|---|
Probab=85.07 E-value=30 Score=31.59 Aligned_cols=125 Identities=14% Similarity=0.048 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011956 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC---IIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYI 152 (474)
Q Consensus 76 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 152 (474)
.|.+.....+...+ .++.+++.+.+|.-+.+..+.++. +--.+....++|......+-.+.|--.|....-...+.
T Consensus 49 ~GI~~laP~la~~l-~~vi~Pl~~~~GaDPamfa~tiLA~DMGGY~LA~~la~~~~~~~fsG~ilgsmlG~TIvFtIPVa 127 (354)
T PF04346_consen 49 AGIMALAPVLAAFL-SPVIGPLFQAIGADPAMFAGTILANDMGGYQLAMELAQDPEAGIFSGLILGSMLGATIVFTIPVA 127 (354)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHhhhcCcCHHHHHHHcCChhhHHHHHHHHHHhhcccEEeehhhh
Confidence 45555555555444 566788999999999998877764 23345556676766666666666665555444333333
Q ss_pred hhcCCCCcc-hhHHHHHH--HHHHHHHHHHHHHhccchhhHHHHHhHHHHHHH
Q 011956 153 AEITPKNLR-GGFTTVHQ--LMICIGVSMTYLIGAFLNWRILALIGTIPCLVQ 202 (474)
Q Consensus 153 ~~~~~~~~r-~~~~~~~~--~~~~~g~~~~~~l~~~l~wr~~f~~~~~~~~~~ 202 (474)
-...++++| -.+.|+.. ....+|..++..+.++ +|...+.=...+.+++
T Consensus 128 Lgii~k~D~~y~a~Gil~GiitIPiG~~vggl~~g~-~~~~il~Nl~Pvii~~ 179 (354)
T PF04346_consen 128 LGIIEKEDHKYLAKGILAGIITIPIGCFVGGLIAGF-DIGMILINLIPVIIFA 179 (354)
T ss_pred hhhcChhhhHHHHHHHHHHHhhhCHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 334444444 23333332 2245666666666543 5554444333333333
|
It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.89 E-value=1 Score=42.41 Aligned_cols=109 Identities=15% Similarity=-0.117 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011956 77 SLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156 (474)
Q Consensus 77 g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 156 (474)
.|-..++.+...+.+...-++.||+|-|+.+..+...+.++.-+.++.++.+....-|-..|+-.+.....-+..++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 45566788888999999999999999888888888878888888888888888888888888666555555555554432
Q ss_pred CCC---------------------c--chhHHHHHHHHHHHHHHHHHHHhcc
Q 011956 157 PKN---------------------L--RGGFTTVHQLMICIGVSMTYLIGAF 185 (474)
Q Consensus 157 ~~~---------------------~--r~~~~~~~~~~~~~g~~~~~~l~~~ 185 (474)
..+ . +|...|+.+....+.+++.....+.
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp 466 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGP 466 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccc
Confidence 211 1 2555666666666666655444433
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.41 E-value=15 Score=34.05 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=29.7
Q ss_pred ccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 011956 386 MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISF 423 (474)
Q Consensus 386 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 423 (474)
+-....-..+|..|+++|..+.|+.|..+..-..+.-.
T Consensus 403 fDlAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~i 440 (503)
T KOG2601|consen 403 FDLAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDI 440 (503)
T ss_pred ccHHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHh
Confidence 34444578899999999999999999998876655433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.16 E-value=13 Score=35.68 Aligned_cols=115 Identities=10% Similarity=-0.024 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccc--ccc----------cc-c-------chHHHHHHH
Q 011956 316 IQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDL--QQW----------IK-A-------TPFLALVGV 375 (474)
Q Consensus 316 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~-~-------~~~~~~~~~ 375 (474)
+.++..++-.++.+++.++++............+++++..++... ++. .+ . .+.|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 455666777888999999888777666666666666665553211 110 00 0 001222233
Q ss_pred HHHHHHHhccccc-hhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 376 LVYTGSFSLGMGG-IPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 376 ~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
.+..=..+....+ ..+..++|....++..+-+++.+...+++..++..+..++.+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333 557889999999999999999999999999999999888876
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.76 E-value=9.3 Score=34.81 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 430 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~ 430 (474)
.+.+.......+...+.=.|..+.+.+... .......+.....-++|+..+....+++.-
T Consensus 105 ~~Vly~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lll 164 (508)
T COG4262 105 RLVLYALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLL 164 (508)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHh
Confidence 334444444445555555677766666522 222333333444478888888887777664
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.04 E-value=14 Score=32.26 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-cCchhHHH----HHHHHHHHHHHHHHH-h----hhHHHHHHHHHHHHhhhhhhhh
Q 011956 77 SLFGSILTIGAMIGAIMSGKIADY-IGRRGTMG----FSDIVCIIGWVIIVF-S----KAAWWLDLGRLLVGYGMGLLSY 146 (474)
Q Consensus 77 g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~~~~~~ 146 (474)
....-++..|..+|....|..... +.||+.+. .+.+++.++.++... . .++..+++.-++.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 444555666666777777777764 45666553 334455554444212 1 1456677777888776433333
Q ss_pred hhhhhhhhcCCCCcchhHHHHHHHHHHHHHH
Q 011956 147 VVPVYIAEITPKNLRGGFTTVHQLMICIGVS 177 (474)
Q Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 177 (474)
....+=-| +++..+.+.--.++..+++|.+
T Consensus 224 ViL~lPhE-yK~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 224 VILNLPHE-YKGYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred HHhcChhh-hcCCCcceehhHHHHHHHHHHH
Confidence 33322222 2222233333334444555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 474 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 6e-35 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 474 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 4e-07 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 3e-04 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 54/439 (12%), Positives = 127/439 (28%), Gaps = 51/439 (11%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
+ L F Y+ + P + G S + S ++I + G
Sbjct: 29 IFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGS 84
Query: 97 IADYIGRRGTMGF----SDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYI 152
++D R + + V + + + + + + L G+ G+ +
Sbjct: 85 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144
Query: 153 AEITPKNLRG---GFTTVHQLM--ICIGVSMTYLIGAFLNWR-ILALIGTIPCLVQLIGL 206
+ RG + + + F +W L + LV L
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204
Query: 207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQ 266
+ ++P+ L + ++ + E E + + +
Sbjct: 205 AMMRDTPQ--------------SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 250
Query: 267 RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF----ISAGFSGSIGMIAMVVIQIPMTL 322
K + + + L ++G ++ Y + + ++ + A IP TL
Sbjct: 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG----IPGTL 306
Query: 323 LGVLLMDK---SGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYT 379
L + DK R + + ++ ++ A + ++
Sbjct: 307 LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP----------AGNPTVDMICMIVI 356
Query: 380 GSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS--FTFNFLMKWSSTGTF 437
G G + + E+ P G+A L +LG + + + + G F
Sbjct: 357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 416
Query: 438 FAFSAICSLTVLFVAKLVP 456
L V+ + ++
Sbjct: 417 MVMIGGSILAVILLIVVMI 435
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 34/398 (8%), Positives = 112/398 (28%), Gaps = 47/398 (11%)
Query: 66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-RRGTMGFSDIVCIIGWVIIVFS 124
+ +S ++ + + +++ +++ + G ++D +G R+ + + ++ +F
Sbjct: 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94
Query: 125 KA---AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS---M 178
+ + +G ++ G +G + K R + + V
Sbjct: 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG 154
Query: 179 TYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADAD 238
++G + ++ + + A A
Sbjct: 155 ASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLA- 213
Query: 239 ISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSI 298
LELF++ L + V + A + +S
Sbjct: 214 -----------------------LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 299 FISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355
F + ++ + L++++ G + LL++ + + ++ +
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA- 309
Query: 356 LFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSW 415
+ ++ ++ + G I + F + + +
Sbjct: 310 ----------TSALEVVILKTLHMFEVPFLLVGCFKYI-TSQFEVRFSATIYLVCFCFFK 358
Query: 416 -LGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVA 452
L +S + + + + +L ++
Sbjct: 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 474 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.53 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.37 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.36 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.31 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.29 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.26 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.22 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=367.01 Aligned_cols=428 Identities=29% Similarity=0.537 Sum_probs=336.7
Q ss_pred chhHHHHHHHHHHHHHHhhccccccccccccccccccCC--------ChhhHHHHHHHHHHHHHHHHHHHHHhhhccCch
Q 011956 33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGL--------SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR 104 (474)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr 104 (474)
..++.+.+.++.+++.+.+++|.++++..+|.+.++++. +.++.|++.+++.+|..++++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345677777788899999999999999999988887743 345689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH------------------HhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHH
Q 011956 105 GTMGFSDIVCIIGWVIIV------------------FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTT 166 (474)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 166 (474)
+++.++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999999 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccc------------hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhC
Q 011956 167 VHQLMICIGVSMTYLIGAFL------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRG 234 (474)
Q Consensus 167 ~~~~~~~~g~~~~~~l~~~l------------~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 234 (474)
+.+.+..+|.++++.++... +||+.+.+..+..++.++..+++||+|+|+..+++.+++.+.+++...
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 99999999999988877543 688888888888888888889999999999999999999988877654
Q ss_pred CCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHH
Q 011956 235 ADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMI 311 (474)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 311 (474)
++...++..+..+... +..+.......+ ..+..........+........+..|.+.+.+..+.... ....
T Consensus 246 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (491)
T 4gc0_A 246 NTLATQAVQEIKHSLD---HGRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTI 319 (491)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH---hhhhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHH
Confidence 3222111111111111 111111111111 223344445555556666777788888888877766544 4556
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhh
Q 011956 312 AMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPW 391 (474)
Q Consensus 312 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (474)
..++..+++.++++++.||+|||+.+..+...+.++++.+....... ......+....++..++..+..++.+
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67788889999999999999999999888888877777666543321 23344445555566666777788889
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhccchhHHHHHHHHHHHHhhheeCcCCCCCCHH
Q 011956 392 VIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-------WSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLE 464 (474)
Q Consensus 392 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (474)
.+.+|.+|++.|+++.|+.+..+++++++++.+.+.+.+ .+....++++++++++..++.++++||+|+|+.|
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 999999999999999999999999999999998877654 2334457788888888888888999999999999
Q ss_pred HHHhhcCCC
Q 011956 465 EIQASMNPF 473 (474)
Q Consensus 465 ~~~~~~~~~ 473 (474)
|+|+.+|++
T Consensus 473 ei~~~f~~~ 481 (491)
T 4gc0_A 473 ELEALWEPE 481 (491)
T ss_dssp HHGGGTC--
T ss_pred HHHHHhCCC
Confidence 999887664
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=323.45 Aligned_cols=390 Identities=15% Similarity=0.111 Sum_probs=283.0
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 011956 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (474)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 113 (474)
++..+......+++.+....+.....+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344566666777777777778778888899999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---
Q 011956 114 CIIGWVIIVF----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--- 186 (474)
Q Consensus 114 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l--- 186 (474)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999998775
Q ss_pred -h-hhHHHHHhHHHHHHHH-HHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHH
Q 011956 187 -N-WRILALIGTIPCLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263 (474)
Q Consensus 187 -~-wr~~f~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (474)
+ ||+.|++.+++.++.. +.++++||+|+....+++.+.. . +.+.+ .++..++....++...++
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~---~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------N-DYPDD---YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------C-C----------------CCTHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------c-ccccc---chhhhhcccccccchHHH
Confidence 7 9999999888877644 4456788887643221111100 0 00000 000000011111112456
Q ss_pred HhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHH-cCCcc---hhHHHHHHHHHHHHHHHHHHHHhhc--CCccee
Q 011956 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLGVLLMDKS--GRRPLL 337 (474)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~ 337 (474)
.++++.++...+..++....... ...+.+.++++ .+.+. +.......++.+++.++.+++.||+ +||+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLLRYG----ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 67777777666666555554333 34445554444 34443 3677778889999999999999999 898877
Q ss_pred eehhhhHH-HHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHH
Q 011956 338 LVSAAGTC-LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL 416 (474)
Q Consensus 338 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 416 (474)
..+..+.. ++.+.+.... ..+........+..+.......+....+..|..|+++|+++.|+.+...++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMNP----------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHHHHHHHHHHHHTTSCC----------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 66655544 3333332210 113333333444444444455566678999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHHhhh
Q 011956 417 -GSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVA 452 (474)
Q Consensus 417 -g~~i~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 452 (474)
|..++|.+.|.+.+. ++...+.+.+++.++..++..
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999994 444444555554444444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=305.51 Aligned_cols=359 Identities=12% Similarity=0.078 Sum_probs=267.0
Q ss_pred HHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 011956 42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 121 (474)
.++++..+..+++.....+.+|.+.+++|++..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34444555566666677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---HHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccch-----------
Q 011956 122 ---VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN----------- 187 (474)
Q Consensus 122 ---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~----------- 187 (474)
++++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+.
T Consensus 109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 889999999999999999999999999999999999999999999999999999999999988762
Q ss_pred -------------------hhHHHHHhHHHHHHHHHHhhc--cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHH
Q 011956 188 -------------------WRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEI 246 (474)
Q Consensus 188 -------------------wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (474)
||+.|++.+...++..+..++ .||+++.. ++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~----------------------- 242 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSDA----------------------- 242 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCCS-----------------------
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cccc-----------------------
Confidence 999998877766654443333 45554310 0000
Q ss_pred HHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhc-HHHHHHHcCCcchhHHHHHHHHHHHHHHHHH
Q 011956 247 REYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY-ASSIFISAGFSGSIGMIAMVVIQIPMTLLGV 325 (474)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 325 (474)
+++..+.+++++++++..+...+..++..........+.+.| ....++......+.......++.+++.++.+
T Consensus 243 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 243 ------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp ------STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 011122345677777877777776666655544444444444 3322221112234677777889999999999
Q ss_pred HHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhh
Q 011956 326 LLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGS 405 (474)
Q Consensus 326 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 405 (474)
++.||++||+.+..+..+..++.+.+... ......... .+.+.+.....+..+++..|.+|++ ++.
T Consensus 317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (438)
T 3o7q_A 317 WLISRFAPHKVLAAYALIAMALCLISAFA------------GGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKY 382 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHc------------CCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 99999999998888777776666655542 222233333 3344445556777888888999865 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHH
Q 011956 406 AGSLVTLVSWLGSWIISFTFNFLMKWSS-TGTFFAFSAICSLT 447 (474)
Q Consensus 406 ~~g~~~~~~~~g~~i~~~i~g~~~~~~~-~~~~~~~~~~~~~~ 447 (474)
+.++.. ...+|+.++|.+.|.+.|..+ +...+.+..++.+.
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 888877 677999999999999999433 33333333333333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=282.59 Aligned_cols=392 Identities=16% Similarity=0.077 Sum_probs=252.6
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhh
Q 011956 67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLS 145 (474)
Q Consensus 67 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 145 (474)
+|+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3499999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCc--chhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhcc-CCCh----h
Q 011956 146 YVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI-PESP----R 214 (474)
Q Consensus 146 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~-~~~p----~ 214 (474)
+...+++.|++|+++ |++++++++.+.++|..++|.+++.+ +||+.|++.++..++..+..++. ++.. +
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999998 67788889999999999999999886 89999999877766655444322 2211 0
Q ss_pred HHHhcCChhHHHHHHHH----------------H-hCCCcchHHHHHHHHH------HHHHHhhccchhHHHHhhHhhHH
Q 011956 215 WLAKTGKGIESEAALQR----------------L-RGADADISEEAAEIRE------YTETLERLSEGGILELFQRKYAH 271 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 271 (474)
....+.+.++.++..+. . ...+.+.......... ......+.+.....+..+.....
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 00011112222221111 1 1111111000000000 00000000000001111111122
Q ss_pred HHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceee-----ehhhhHHH
Q 011956 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLL-----VSAAGTCL 346 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~ 346 (474)
.......+...........++.|.....+......+.......++.+++.++.+++.||++||+... .+..+.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 3333333334443334444444544433333344567777888888889999999999999987765 45555555
Q ss_pred HHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011956 347 GCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFN 426 (474)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g 426 (474)
+.+.+......... ....+........++.+.......+..+.++.|.+|++.|+++.|+.+...++|..++|.+.+
T Consensus 367 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~ 443 (491)
T 4aps_A 367 SFLLMAIPGALYGT---SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT 443 (491)
T ss_dssp HHTTTHHHHHHCCC---CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCC---CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444332211100 001233334444444555555667778899999999999999999999999999999999999
Q ss_pred HHHhhhccchhHHHHHHHHHHHHhhheeCcCCCCC
Q 011956 427 FLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGR 461 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (474)
.+.+.++...+...+.++.+..++.++..++.+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 444 LYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp GGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886666667777777666666666555554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=282.87 Aligned_cols=358 Identities=15% Similarity=0.062 Sum_probs=273.6
Q ss_pred HHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 011956 43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV 122 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 122 (474)
++++..+...++.+...+.+|.+.+++|.++++.+++.+.+.++..++++++|+++||+|||+++..+..+.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34455566666677778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHH
Q 011956 123 FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIP 198 (474)
Q Consensus 123 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~ 198 (474)
+++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999877 899999998888
Q ss_pred HHHHHH-HhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHH
Q 011956 199 CLVQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (474)
Q Consensus 199 ~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (474)
.++..+ ..+++||+++...+ +++.+.++++.+++|..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDAP-----------------------------------RTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTCC-----------------------------------CCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCCcc-----------------------------------cccHHHHHHHHhcCcchHHHHHHH
Confidence 777665 45667887542100 011233456777888888877777
Q ss_pred HHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhh-HHHHHHHHHHHhh
Q 011956 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAG-TCLGCLLAALSFL 356 (474)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 356 (474)
++............+.|....++......+.......++.+++.++.+++.||.+++ ...+... ...+...+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 777776666667778887776665555556777788888899999999999988762 1222221 1111111111100
Q ss_pred hcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 011956 357 FQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGT 436 (474)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~ 436 (474)
. ..+.+......++.+.......+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+.+.+..
T Consensus 287 ~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 357 (375)
T 2gfp_A 287 G--------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 357 (375)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred c--------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 0 1122333333333444444567777899999998 899999999999999999999999999988555555
Q ss_pred hHHHHHHHHH
Q 011956 437 FFAFSAICSL 446 (474)
Q Consensus 437 ~~~~~~~~~~ 446 (474)
.+....+..+
T Consensus 358 ~~~~~~~~~~ 367 (375)
T 2gfp_A 358 GLLMTLMGLL 367 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544443333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=252.42 Aligned_cols=145 Identities=16% Similarity=0.159 Sum_probs=132.5
Q ss_pred ccccccC------CChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHH
Q 011956 64 GITNDLG------LSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRL 135 (474)
Q Consensus 64 ~i~~~~~------~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 135 (474)
.+.+++| .+..+.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++.+++++++ |++.++++|+
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4677888 9999999999999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHH---HHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV---HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
++|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+ +||+.|++.++..++..+..++
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876666 8899999999999998876 8999999988877765555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-32 Score=258.25 Aligned_cols=366 Identities=12% Similarity=0.068 Sum_probs=224.7
Q ss_pred cccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH---HHHHhhhH-HHHHHH
Q 011956 59 SPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV---IIVFSKAA-WWLDLG 133 (474)
Q Consensus 59 ~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~~l~~~ 133 (474)
.+.+|. +++++|.++.+.|++.+.+.++..++++++|+++||+|||+++.++..+++++.. .+.+++.. ..++..
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 5677999999999999999999999999999999999999999998887765322 12233222 123456
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCC--CcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHHHhhc
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPK--NLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
+.+.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555555555543 3456667777777788888888888776 7999999877776555555555
Q ss_pred cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccc
Q 011956 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (474)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (474)
.+|+++. +.+.++.. .... ++.+..+++++++++..+...+..+..........
T Consensus 187 ~~~~~~~---~~~~~~~~------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 187 AKTDAPS---SATVANAV------GANH-----------------SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp SCCCCSC---SSCSSSSS------SSCC-----------------CCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccc---cccccccc------cccc-----------------ccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 4443311 00000000 0000 00111234556666666555444333332222222
Q ss_pred hhhHhcHHHHHHHc---CCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccc
Q 011956 289 NGIAFYASSIFISA---GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIK 365 (474)
Q Consensus 289 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (474)
...+.|.+..++.. ....+.......++.+++.++.++++||++||+.+..+..+.+++.+.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~------------ 308 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------------ 308 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33444444332211 111134555666778888999999999999999877666665555444332
Q ss_pred cchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHH
Q 011956 366 ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLV-TLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAI 443 (474)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~~~~~-~~~~~~~~~~~~ 443 (474)
..+...+.....+.+.......+..+.+..|.+|++.|+++.++. +....+|+.++|.+.|.+.+. ++...+.+.+++
T Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~ 388 (417)
T 2cfq_A 309 ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 112222222222222222223344568999999999999999994 888899999999999999883 444445555555
Q ss_pred HHHHHHhhheeCcCCCCCC
Q 011956 444 CSLTVLFVAKLVPETKGRT 462 (474)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~ 462 (474)
.++..++.++..+|+++.+
T Consensus 389 ~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 389 ALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHhhhcCCCchH
Confidence 5555555555556554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=132.66 Aligned_cols=150 Identities=13% Similarity=0.159 Sum_probs=127.8
Q ss_pred cccccccc-ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhHHHHHHHHHH-HHHHHHHHh--hhHHHHHHH
Q 011956 60 PAQSGITN-DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTMGFSDIVCI-IGWVIIVFS--KAAWWLDLG 133 (474)
Q Consensus 60 ~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~ 133 (474)
...|.+.+ .+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 352 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 34444444 4899999999999999999999999999999999 99999988877776 666666665 367778888
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHH-HHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
.++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+ ||+..|++.++..++..+..++
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988898899999999999999999999999999 999999998876 8999999988887776665554
Q ss_pred c
Q 011956 209 I 209 (474)
Q Consensus 209 ~ 209 (474)
+
T Consensus 433 ~ 433 (451)
T 1pw4_A 433 V 433 (451)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=124.04 Aligned_cols=142 Identities=8% Similarity=0.035 Sum_probs=119.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011956 72 SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVY 151 (474)
Q Consensus 72 s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 151 (474)
+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999999999999999999999999998888887777778888888888888888877777778899
Q ss_pred hhhcCCCCcchhHHHH-HHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh-hccCCCh
Q 011956 152 IAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPESP 213 (474)
Q Consensus 152 i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~-~~~~~~p 213 (474)
+.|.+|++.|+++.++ ++....+|..++|.+++.+ |++..|.+.+++.++..+.. ...||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 4778889999999998876 78888888888777765543 4456554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=122.47 Aligned_cols=142 Identities=12% Similarity=0.012 Sum_probs=118.7
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (474)
+.+.+|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++.. ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 445569999999999999999999999999999999999999999999999999998888887765544 8889999999
Q ss_pred hhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----h-hhHHHHHhHHHHHHHHHHhhcc
Q 011956 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQLIGLCFI 209 (474)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~-wr~~f~~~~~~~~~~~~~~~~~ 209 (474)
.+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ | ++..|++.++..++..+..+..
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999866 888888777 5568999999988877 6 8888887665555444443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-12 Score=121.58 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=118.2
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHH-----HHHHHHHHHHHHHHHhh---------hHHHH
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMG-----FSDIVCIIGWVIIVFSK---------AAWWL 130 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~l 130 (474)
..+.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++.++.. +.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4aps_A 310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL 389 (491)
T ss_dssp HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 34456666677888889999999999999999999999987665 77777777777666643 67778
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHHHhh
Q 011956 131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLC 207 (474)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~~ 207 (474)
.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+ ++.+.|++.+...++..+..+
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999887 667788887777776554443
Q ss_pred -ccCCC
Q 011956 208 -FIPES 212 (474)
Q Consensus 208 -~~~~~ 212 (474)
+.++.
T Consensus 470 ~~~~~~ 475 (491)
T 4aps_A 470 FLSKRI 475 (491)
T ss_dssp HC----
T ss_pred HHHHHH
Confidence 33433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.9e-12 Score=116.51 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=116.2
Q ss_pred HhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccch
Q 011956 292 AFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
....+.+.++.+.+.. .......++..++.+..|+++||+|||+.+..+..+..++.+..... ++
T Consensus 20 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~ 87 (375)
T 2gfp_A 20 IPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT------------SS 87 (375)
T ss_dssp HHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------------cc
Confidence 3344555555555443 67777888899999999999999999999999888888887777663 33
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHH
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLT 447 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~-~~~~~~~~~~~~~~~~ 447 (474)
...+....++.+.......+....++.|..|+++|+++.++.+....+|..++|.+.+.+.+. ++...+.+.+....+.
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 444444555555555566777789999999999999999999999999999999999998884 4444555555555555
Q ss_pred HHhhheeCcCCCC
Q 011956 448 VLFVAKLVPETKG 460 (474)
Q Consensus 448 ~~~~~~~~~~~~~ 460 (474)
.+...+..||+++
T Consensus 168 ~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 168 TFSMARWMPETRP 180 (375)
T ss_dssp HCCCCCSSCCCST
T ss_pred HHHHHHHCcccCC
Confidence 5545555666543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=118.04 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHhhccchhhHhcHHHHHH------HcCCcchhHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeehh
Q 011956 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI------SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVSA 341 (474)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~ 341 (474)
.++......++.....+.....++.|+...++ ......+.......++..++.++.|+++||+ |||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~ 92 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS 92 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34444444444444443334444444443333 2333445778888889999999999999999 9999998888
Q ss_pred hhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHH---HHHHHHHHH
Q 011956 342 AGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL---VTLVSWLGS 418 (474)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~ 418 (474)
++..++.++..+. ..+...+....++.+.......+...+++.|.+|+++|+.+.+. .+...++|.
T Consensus 93 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 93 LIYCVGHAFLAIF-----------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHHHHT-----------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 8877777776652 21344444445555555566678888999999999999876666 889999999
Q ss_pred HHHHHHHHHHHh-hhccchhHHHHHHHHHHHH
Q 011956 419 WIISFTFNFLMK-WSSTGTFFAFSAICSLTVL 449 (474)
Q Consensus 419 ~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~ 449 (474)
.++|.+.+.+.+ .++...+.+.+.+.++..+
T Consensus 162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 999999999988 4444445544444443333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-10 Score=111.66 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=112.1
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh-----hHHHHHH-HH
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-----AAWWLDL-GR 134 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~r 134 (474)
..|.+.++.+.+..+.........+...++.++++++.||+|||+.++.+....+++.+..+... +...+.. .-
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 378 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 34557778888888888888888899999999999999999999999999888888777665431 1222221 12
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----------hhhHHHHHhHHHHHHHHH
Q 011956 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----------~wr~~f~~~~~~~~~~~~ 204 (474)
+..+.+. ...+....+.+|.+|.+.|++++++......+|..+++.+...+ ++.+.|++.++++++..+
T Consensus 379 ~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 379 YVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 2222222 24467788999999999999999999998888888876654332 455678888887777554
Q ss_pred -HhhccCCCh
Q 011956 205 -GLCFIPESP 213 (474)
Q Consensus 205 -~~~~~~~~p 213 (474)
.++++||+.
T Consensus 458 ~~~~~~PETk 467 (491)
T 4gc0_A 458 FMWKFVPETK 467 (491)
T ss_dssp HHHHHCCCCT
T ss_pred HHHheecCCC
Confidence 457799984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 474 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-19 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 8e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 87.8 bits (216), Expect = 2e-19
Identities = 62/443 (13%), Positives = 129/443 (29%), Gaps = 37/443 (8%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
+ L F Y+ + P + G S + S ++I + G
Sbjct: 26 IFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGS 81
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAA----WWLDLGRLLVGYGMGLLSYVVPVYI 152
++D R + I+ + + F A + + L G+ G+ +
Sbjct: 82 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141
Query: 153 AEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------LNWRILALIGTIPCLVQLIGL 206
+ RGG +V +G + L+ L + LV L
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201
Query: 207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQ 266
+ ++P+ L + ++ + E E + + +
Sbjct: 202 AMMRDTPQS--------------CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 247
Query: 267 RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVL 326
K + + + L ++G ++ Y + A S IP TLL
Sbjct: 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307
Query: 327 LMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 386
+ DK R L + + ++ + + ++ G G
Sbjct: 308 MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV-------DMICMIVIGFLIYGP 360
Query: 387 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM--KWSSTGTFFAFSAIC 444
+ + E+ P G+A L +LG + + + G F
Sbjct: 361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 420
Query: 445 SLTVLFVAKLVPETKGRTLEEIQ 467
L V+ + ++ K R + +Q
Sbjct: 421 ILAVILLIVVMIGEKRRHEQLLQ 443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 48.6 bits (114), Expect = 8e-07
Identities = 32/397 (8%), Positives = 94/397 (23%), Gaps = 27/397 (6%)
Query: 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
+ + +S ++ + + +++ +++ + G ++D +G R + + ++ +
Sbjct: 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93
Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184
L L+ G+ GF +
Sbjct: 94 IFGPLLQYNILVGSIVGGIY-----------------LGFCFNAGAPAVEAFIEKVSRRS 136
Query: 185 FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAA 244
+ + G + + + + + L A D A
Sbjct: 137 NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSAT 196
Query: 245 EIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGF 304
S LELF++ L + V + A + +S F +
Sbjct: 197 VANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ 256
Query: 305 SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWI 364
+ + ++ + R + + S + +
Sbjct: 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316
Query: 365 KATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSA-GSLVTLVSWLGSWIISF 423
+ + ++ F + + L +S
Sbjct: 317 ILKTLHMF---------EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367
Query: 424 TFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKG 460
+ + + + +L ++ G
Sbjct: 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 474 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.36 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-40 Score=318.38 Aligned_cols=396 Identities=14% Similarity=0.095 Sum_probs=266.7
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 011956 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (474)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 113 (474)
++.+|.+...++++.+....+...++.+.|.++ |+|+|.+|.|++.+++.+++.++++++|+++||+|||+++.++.++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 98 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 98 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 344555555555555555555555566677665 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh----hHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---
Q 011956 114 CIIGWVIIVFSK----AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--- 186 (474)
Q Consensus 114 ~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l--- 186 (474)
.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 178 (447)
T d1pw4a_ 99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178 (447)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence 999999988764 7889999999999999999999999999999999999999999999999999998877654
Q ss_pred --hhhHHHHHhHHHHHHHHH-HhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHH
Q 011956 187 --NWRILALIGTIPCLVQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263 (474)
Q Consensus 187 --~wr~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (474)
+||+.|++.+++.++..+ .+++++++|+........+.. ++..++..+..+++...++...+.
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 244 (447)
T d1pw4a_ 179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK--------------NDYPDDYNEKAEQELTAKQIFMQY 244 (447)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC--------------CC-------------CCTHHHHHH
T ss_pred hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh--------------hhcccchhhccccccchhhHHHHH
Confidence 899999998887776544 445566665432211111100 000000011111112223334455
Q ss_pred HhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHH-cCCc---chhHHHHHHHHHHHHHHHHHHHHhhcCCcceeee
Q 011956 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLV 339 (474)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 339 (474)
.++++..+......++........ ..+.+.++.+ .+.+ .+.......+..+++.++.|++.||++|++....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (447)
T d1pw4a_ 245 VLPNKLLWYIAIANVFVYLLRYGI----LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 320 (447)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHH----HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCchHHHHHHHhhhhhhhhhcc----hhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence 666666666555555554443333 3333433332 2333 2367777788899999999999999998765544
Q ss_pred hhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHH-H
Q 011956 340 SAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLG-S 418 (474)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~ 418 (474)
......+............ ..+........+..+.......+....+..|.+|++.||++.|+.+...+++ .
T Consensus 321 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~ 393 (447)
T d1pw4a_ 321 GVFFMTLVTIATIVYWMNP-------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 393 (447)
T ss_dssp HHHHHHHHHHHHHHTTSCC-------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 4433333332222221111 2233333333444444445556677789999999999999999999998875 5
Q ss_pred HHHHHHHHHHHh-hhccchhHHHHHHHHHHHHhhheeC
Q 011956 419 WIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLV 455 (474)
Q Consensus 419 ~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (474)
.++|.+.|.+.| .++...+++..++.++..++.+.+.
T Consensus 394 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 394 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999 4444445555554444444444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.6e-30 Score=244.43 Aligned_cols=373 Identities=12% Similarity=0.043 Sum_probs=237.8
Q ss_pred cccccccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHH---
Q 011956 55 IGYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWL--- 130 (474)
Q Consensus 55 ~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l--- 130 (474)
.+...|.+|. +.+++|+|+++.|++.+++.++..++++++|+++||+|||++++++..+..++..+..+..+....
T Consensus 23 ~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (417)
T d1pv7a_ 23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN 102 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3344566664 677899999999999999999999999999999999999999999999999999888887766554
Q ss_pred -HHHHHHHHhhhhhhhhhhhhhhhhcCCCC--cchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHH-HHH
Q 011956 131 -DLGRLLVGYGMGLLSYVVPVYIAEITPKN--LRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCL-VQL 203 (474)
Q Consensus 131 -~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~-~~~ 203 (474)
++.+.+.+.+.+...........+..+++ ++.+..+........+..+++.+++.+ +|+..+........ ...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 182 (417)
T d1pv7a_ 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAV 182 (417)
T ss_dssp CHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHH
Confidence 34455555555554444444444443332 345566777777888888888888776 56666665555444 455
Q ss_pred HHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHH
Q 011956 204 IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQ 283 (474)
Q Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (474)
+..+..+|+|+....+ ++. .+..++.......+.++.+..+............
T Consensus 183 ~~~~~~~~~~~~~~~~---~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T d1pv7a_ 183 LLFFAKTDAPSSATVA---NAV------------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp HHHSSCCCSCSSSCSS---HHH------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchhhh---hhh------------------------hhhcccccccccccccccccccchhhhhHHHHHH
Confidence 5556666665311100 000 0000001111122222233333333222222222
Q ss_pred hhccchhhHhcHHHHHHHc---CCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhccc
Q 011956 284 QFGGVNGIAFYASSIFISA---GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDL 360 (474)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (474)
..........+........ ............++..++..+.+++.||.++|+.+..+..+.+++.+.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~------- 308 (417)
T d1pv7a_ 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------- 308 (417)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc-------
Confidence 1111111111111111100 111125556666788888999999999999999988888877777766665
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHH-HHHHHHHHHHHHHHHHHHh-hhccchhH
Q 011956 361 QQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT-LVSWLGSWIISFTFNFLMK-WSSTGTFF 438 (474)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~i~g~~~~-~~~~~~~~ 438 (474)
..+.+......++.+.......+...+++.|.+|++.|+++.|+.. ....+|..++|.+.|.+.| .+....++
T Consensus 309 -----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 309 -----ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred -----ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 2334444444444455545566777899999999999999999864 5667999999999999999 55556677
Q ss_pred HHHHHHHHHHHhhheeCcCCCCCCHHHH
Q 011956 439 AFSAICSLTVLFVAKLVPETKGRTLEEI 466 (474)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (474)
+.+++.++..++..+..+++++.+..+.
T Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~r~ 411 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFTLSGPGPLSLLRR 411 (417)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCccchhHh
Confidence 7777777777777777777666655443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=5.4e-15 Score=137.29 Aligned_cols=148 Identities=8% Similarity=0.016 Sum_probs=129.1
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (474)
..++.+.+....+...+...++..++..+.+++.||+|+|+.+.++..+.+++.++..+.++.+.+++..++.|++.+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 329 (417)
T d1pv7a_ 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL 329 (417)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH
Confidence 44555667778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCcchhHHHHH-HHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh-hccCCC
Q 011956 145 SYVVPVYIAEITPKNLRGGFTTVH-QLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPES 212 (474)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~-~~~~~~ 212 (474)
.+...+++.|.+|+++|+++.++. +....+|..++|.+++.+ ||+..|++.+++.++..+.. +.++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999975 566789999999888877 89999999888877655444 444433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=4.6e-12 Score=118.68 Aligned_cols=144 Identities=11% Similarity=0.089 Sum_probs=113.3
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHH
Q 011956 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-----SKAAWWLDLGRLLVG 138 (474)
Q Consensus 64 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G 138 (474)
.+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+....... ..+.+...++-++.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 466788999999999999999999999999999999999876554444433333322222 346777788888899
Q ss_pred hhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHH-HHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhh
Q 011956 139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC 207 (474)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 207 (474)
++.+...+....+..|.+|+++|+++.|+.+....+ |.+++|.+.+.+ ||+..|++.+...++..++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 998888899999999999999999999998877666 566778777765 899999887777666554443
|